RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 023494
(281 letters)
>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 230
Score = 275 bits (705), Expect = 3e-94
Identities = 209/230 (90%), Positives = 222/230 (96%)
Query: 48 ARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVV 107
+RVDKFSKSDIIVSPSILSANF+KLGEQVKA+E AGCDWIHVDVMDGRFVPNITIGPLVV
Sbjct: 1 SRVDKFSKSDIIVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVV 60
Query: 108 DALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAK 167
D+LRP+TDLPLDVHLMIVEP+QRVPDFIKAGADIVSVHCEQSSTIHLHRT+NQIK LGAK
Sbjct: 61 DSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAK 120
Query: 168 AGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNP 227
AGVVLNP T L+AIE VLD VDLVLIMSVNPGFGGQSFIESQVKKISDLR++C E+G+NP
Sbjct: 121 AGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNP 180
Query: 228 WIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQ 277
WIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA DYAEAIKGIKTSKRP+
Sbjct: 181 WIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGIKTSKRPE 230
>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase
{Synechocystis sp. PCC 6803 [TaxId: 1148]}
Length = 221
Score = 242 bits (619), Expect = 2e-81
Identities = 151/220 (68%), Positives = 186/220 (84%)
Query: 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDL 116
+I+V+PSILSA+F++LGE++KAV+ AG DWIHVDVMDGRFVPNITIGPL+VDA+RP+T
Sbjct: 2 NIVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKK 61
Query: 117 PLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT 176
LDVHLMIVEPE+ V DF KAGADI+SVH E +++ HLHRTL QI++LG KAG VLNP+T
Sbjct: 62 TLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPST 121
Query: 177 SLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG 236
L +E VL V DL+LIMSVNPGFGGQSFI + KI LR+MC E+G++PWIEVDGG+
Sbjct: 122 PLDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLK 181
Query: 237 PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRP 276
P N ++V+EAGANA+VAGSAVF A +YAEAI G++ SKRP
Sbjct: 182 PNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNSKRP 221
>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase
{Streptococcus pyogenes [TaxId: 1314]}
Length = 217
Score = 227 bits (580), Expect = 2e-75
Identities = 98/216 (45%), Positives = 147/216 (68%), Gaps = 2/216 (0%)
Query: 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP 117
+ ++PSIL+A++A ++ +E +++H+D+MDG+FVPNI+ G VV ++R + L
Sbjct: 2 LKIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSKLV 61
Query: 118 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 177
D HLM+V+PE+ V F +AGADI+++H E T H+H L +IK G KAGVV+NP T
Sbjct: 62 FDCHLMVVDPERYVEAFAQAGADIMTIHTES--TRHIHGALQKIKAAGMKAGVVINPGTP 119
Query: 178 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237
+A+E +LD+VD VLIM+VNPGFGGQ+FI ++K++ + + EKG++ IEVDGGV
Sbjct: 120 ATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDN 179
Query: 238 KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
K EAGAN VAGS +F A D ++ ++T+
Sbjct: 180 KTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTA 215
>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice
(Oryza sativa) [TaxId: 4530]}
Length = 220
Score = 187 bits (475), Expect = 1e-59
Identities = 86/217 (39%), Positives = 123/217 (56%), Gaps = 8/217 (3%)
Query: 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 119
++PS+LS++FA L + + G DW+H+D+MDG FVPN+TIG V+ +LR T LD
Sbjct: 4 IAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTKAYLD 63
Query: 120 VHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLS 179
HLM+ P V KAGA + H E S + + IK G + GV L P T +
Sbjct: 64 CHLMVTNPSDYVEPLAKAGASGFTFHIE-VSRDNWQELIQSIKAKGMRPGVSLRPGTPVE 122
Query: 180 AI---ECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG 236
+ + V+LVL+M+V PGFGGQ F+ ++K+ LR+ + IEVDGG+G
Sbjct: 123 EVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYP----SLDIEVDGGLG 178
Query: 237 PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
P AGAN +VAGS++FGA + E I ++ S
Sbjct: 179 PSTIDVAASAGANCIVAGSSIFGAAEPGEVISALRKS 215
>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium
falciparum [TaxId: 5833]}
Length = 221
Score = 186 bits (472), Expect = 4e-59
Identities = 75/218 (34%), Positives = 122/218 (55%), Gaps = 7/218 (3%)
Query: 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRP-VTDLP 117
I++PS+L++N +KL E+ + +E G +WIH+DVMD FVPN++ GP V++ L+ +
Sbjct: 4 IIAPSVLASNISKLAEETQRMESLGAEWIHLDVMDMHFVPNLSFGPPVINNLKKYTKSIF 63
Query: 118 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 177
DVHLM+ PE+ VP + T + +I+D G+ + P T
Sbjct: 64 FDVHLMVEYPEKYVPLLKTSNQLTFHFEALNEDTERCIQLAKEIRDNNLWCGISIKPKTD 123
Query: 178 LSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV 235
+ + +LD +++ VL+M+V PGFGGQSF+ + K+S LR+ N I+VDGG+
Sbjct: 124 VQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYK----NLNIQVDGGL 179
Query: 236 GPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
+ GAN +VAG+++F A+D I ++ S
Sbjct: 180 NIETTEISASHGANIIVAGTSIFNAEDPKYVIDTMRVS 217
>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase
{Escherichia coli [TaxId: 562]}
Length = 213
Score = 141 bits (355), Expect = 7e-42
Identities = 33/214 (15%), Positives = 73/214 (34%), Gaps = 14/214 (6%)
Query: 64 ILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTD--LPLDVH 121
++ + + + L VD+++ + + G V L+ + + L
Sbjct: 5 QVALDNQTMDSAYETTRLIA---EEVDIIEVGTILCVGEGVRAVRDLKALYPHKIVLADA 61
Query: 122 LMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAI 181
+ + +A AD V+V C + L+ K+ + L +
Sbjct: 62 KIADAGKILSRMCFEANADWVTVICC-ADINTAKGALDVAKEFNGDVQIELTGYWTWEQA 120
Query: 182 ECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKN 239
+ D + +V S + G ++ E+ + I L + + V GG+ ++
Sbjct: 121 QQWRDAGIGQVVYHRSRDAQAAGVAWGEADITAIKRLSD------MGFKVTVTGGLALED 174
Query: 240 AYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
+ +AG ++ A EA + K S
Sbjct: 175 LPLFKGIPIHVFIAGRSIRDAASPVEAARQFKRS 208
>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}
Length = 230
Score = 56.0 bits (134), Expect = 5e-10
Identities = 33/201 (16%), Positives = 67/201 (33%), Gaps = 13/201 (6%)
Query: 74 EQVKAVELAGCDWIHV-DVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVP 132
KA + AG I V D + + IT P++ + I V
Sbjct: 37 LMAKAAQEAGAVGIRANSVRDIKEIQAITDLPIIGIIKKDYPPQEP----FITATMTEVD 92
Query: 133 DFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVL 192
++++ C + + I+ + K L A + E ++ +
Sbjct: 93 QLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMADISTFDEGLVAHQAGID 152
Query: 193 IMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL 251
+ G + + L + G+ + +G + P+ A K+ + G +
Sbjct: 153 FVGTT-LSGYTPYSRQEAGPDVALIEALCKAGI--AVIAEGKIHSPEEAKKINDLGVAGI 209
Query: 252 VAGSAVFG----AKDYAEAIK 268
V G A+ A+ + EA+K
Sbjct: 210 VVGGAITRPKEIAERFIEALK 230
>d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase
(OMP decarboxylase) {Pyrococcus horikoshii [TaxId:
53953]}
Length = 206
Score = 50.3 bits (119), Expect = 3e-08
Identities = 28/174 (16%), Positives = 64/174 (36%), Gaps = 7/174 (4%)
Query: 103 GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIK 162
G ++ L+ T + + L + +P+ + A V +H + +
Sbjct: 39 GVDIIRRLKEETGVEIIADLKL----ADIPNTNRLIARKVFGAGADYVIVHTFVGRDSVM 94
Query: 163 DLGAKAGVVLNPAT-SLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCL 221
+ +++ A+E + + D + ++ G ++ ++I +R
Sbjct: 95 AVKELGEIIMVVEMSHPGALEFINPLTDRFIEVANEIEPFGVIAPGTRPERIGYIRDRLK 154
Query: 222 EKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275
E + G A ++AGA+ ++ G A++ A + EA K I R
Sbjct: 155 EG--IKILAPGIGAQGGKAKDAVKAGADYIIVGRAIYNAPNPREAAKAIYDEIR 206
>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}
Length = 222
Score = 48.7 bits (115), Expect = 2e-07
Identities = 29/211 (13%), Positives = 68/211 (32%), Gaps = 31/211 (14%)
Query: 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL---------DVHLMI 124
+ A G I + + A++ DLP+ + I
Sbjct: 27 KMALAAYEGGAVGIRAN------------TKEDILAIKETVDLPVIGIVKRDYDHSDVFI 74
Query: 125 VEPEQRVPDFIKAGADIVSVHCEQ--SSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIE 182
+ V + I++ +++++ L ++ I+ ++ + AT A
Sbjct: 75 TATSKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIATVEEAKN 134
Query: 183 CVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAY 241
D I + G+ + + + + L+ I +G V P
Sbjct: 135 AARLGFDY--IGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVI-AEGNVITPDMYK 191
Query: 242 KVIEAGANALVAGSAV----FGAKDYAEAIK 268
+V++ G + V G A+ K + + ++
Sbjct: 192 RVMDLGVHCSVVGGAITRPKEITKRFVQVME 222
>d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax
[TaxId: 2271]}
Length = 226
Score = 44.1 bits (103), Expect = 6e-06
Identities = 24/179 (13%), Positives = 49/179 (27%), Gaps = 4/179 (2%)
Query: 96 FVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLH 155
++ +G + PV DV + IK V S
Sbjct: 42 APNHLELGLVSQSVDIPVYAQGADVEAGGAHTAHVSLENIKEA-GGSGVILNHSEAPLKL 100
Query: 156 RTLNQIKDLGAKAG--VVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKI 213
L ++ G VV+ +++ V + G++ + + I
Sbjct: 101 NDLARLVAKAKSLGLDVVVCAPDPRTSLAAAALGPHAVAVEPPELIGTGRAVSRYKPEAI 160
Query: 214 SDLRRMCLEKGVNPWIEVDGGVGPKN-AYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271
+ + + G+ + + G ++ SA AKD I +
Sbjct: 161 VETVGLVSRHFPEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKAKDPYAKIVELA 219
>d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP
decarboxylase) {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 212
Score = 43.4 bits (101), Expect = 9e-06
Identities = 35/220 (15%), Positives = 75/220 (34%), Gaps = 14/220 (6%)
Query: 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 118
+++ IL+ + + ++ V + + G ++ R +
Sbjct: 1 VMNRLILAMDLMNRDDALRVTGEVREYIDTVKIGYPLVLSE---GMDIIAEFRKRFGCRI 57
Query: 119 DVHLMIVE----PEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNP 174
+ + E+ KAGAD + VH R + + + +L
Sbjct: 58 IADFAVADIPETNEKICRATFKAGADAIIVHG--FPGADSVRACLNVAEEMGREVFLLTE 115
Query: 175 ATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG 234
+ A + D + M V+ G ++ +++S LR + + G
Sbjct: 116 MSHPGAEMFIQGAADEIARMGVDLGVKNYVGPSTRPERLSRLREII----GQDSFLISPG 171
Query: 235 VGPKNAYKV-IEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
VG + A+A++ G +++ A + A A GI S
Sbjct: 172 VGAQGGDPGETLRFADAIIVGRSIYLADNPAAAAAGIIES 211
>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon
(Pyrococcus furiosus) [TaxId: 2261]}
Length = 206
Score = 43.3 bits (101), Expect = 1e-05
Identities = 32/208 (15%), Positives = 60/208 (28%), Gaps = 20/208 (9%)
Query: 64 ILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLM 123
I E V+ G I + + + IG + R D V
Sbjct: 11 ITDRRLKPEVESVREALEGGATAIQMRIKNAPTREMYEIGKTLRQLTRE-YDALFFVDDR 69
Query: 124 IVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIEC 183
+ D V + + + A+E
Sbjct: 70 VDVALAVDADG---------VQLGPEDMPIEVAKEI-----APNLIIGASVYSLEEALEA 115
Query: 184 VLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKV 243
D + SV P + ++ + + P + GG+ NA +V
Sbjct: 116 EKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESV----KIPVV-AIGGINKDNAREV 170
Query: 244 IEAGANALVAGSAVFGAKDYAEAIKGIK 271
++ G + + SAV GA+D +A + ++
Sbjct: 171 LKTGVDGIAVISAVMGAEDVRKATEELR 198
>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima
[TaxId: 2336]}
Length = 202
Score = 42.7 bits (100), Expect = 1e-05
Identities = 31/195 (15%), Positives = 64/195 (32%), Gaps = 23/195 (11%)
Query: 95 RFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQ----SS 150
+ V + V+ + + + ++E VPD ++ + + +
Sbjct: 10 KIVAVLRANS--VEEAKEKALAVFEGGVHLIEITFTVPDADTVIKELSFLKEKGAIIGAG 67
Query: 151 TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNP-------GFGGQ 203
T+ + + GA+ V + +S V + +M+ G
Sbjct: 68 TVTSVEQCRKAVESGAEFIVSPHLDEEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTIL 127
Query: 204 SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFG---- 259
+V ++ M ++ GGV N + +AG A+ GSA+
Sbjct: 128 KLFPGEVVGPQFVKAMKGPFPNVKFVPT-GGVNLDNVCEWFKAGVLAVGVGSALVKGTPD 186
Query: 260 -----AKDYAEAIKG 269
AK + E I+G
Sbjct: 187 EVREKAKAFVEKIRG 201
>d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis
[TaxId: 1423]}
Length = 226
Score = 39.9 bits (92), Expect = 2e-04
Identities = 26/132 (19%), Positives = 58/132 (43%)
Query: 140 DIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPG 199
D+ ++ IH+ + K++ A G ++ ++ + E D + + P
Sbjct: 85 DVELALNLKADGIHIGQEDANAKEVRAAIGDMILGVSAHTMSEVKQAEEDGADYVGLGPI 144
Query: 200 FGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFG 259
+ ++ +++ + L +G++ I GG+ NA VI+AGA+ + SA+
Sbjct: 145 YPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGADGVSMISAISQ 204
Query: 260 AKDYAEAIKGIK 271
A+D A + +
Sbjct: 205 AEDPESAARKFR 216
>d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus
woesei [TaxId: 2262]}
Length = 224
Score = 37.3 bits (85), Expect = 0.001
Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 1/86 (1%)
Query: 189 DLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKN-AYKVIEAG 247
D V + G +++ + I++ + + + G+ K IE G
Sbjct: 138 DYVAVEPPELIGTGIPVSKAKPEVITNTVELVKKVNPEVKVLCGAGISTGEDVKKAIELG 197
Query: 248 ANALVAGSAVFGAKDYAEAIKGIKTS 273
++ S V AKD +AI + +
Sbjct: 198 TVGVLLASGVTKAKDPEKAIWDLVSG 223
>d1dbta_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP
decarboxylase) {Bacillus subtilis [TaxId: 1423]}
Length = 237
Score = 33.3 bits (75), Expect = 0.023
Identities = 10/48 (20%), Positives = 20/48 (41%)
Query: 226 NPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
+ V E G++A+V G ++ A+D +A K ++
Sbjct: 186 MSEDAANDQVRVATPAIAREKGSSAIVVGRSITKAEDPVKAYKAVRLE 233
>d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon
Aeropyrum pernix [TaxId: 56636]}
Length = 234
Score = 31.9 bits (72), Expect = 0.053
Identities = 25/129 (19%), Positives = 47/129 (36%), Gaps = 4/129 (3%)
Query: 133 DFIKAGADIVSVHCEQSSTI-HLHRTLNQIKDLGAKAGVVLNP--ATSLSAIECVLDVVD 189
++AGA + V S ++R ++ I L G V+ L + + +VD
Sbjct: 96 TVLEAGATELDVVPHLSLGPEAVYREVSGIVKLAKSYGAVVKVILEAPLWDDKTLSLLVD 155
Query: 190 LVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGA 248
+ ++ R L K + ++ GG+ +A + AGA
Sbjct: 156 SSRRAGADIVKTSTGVYTKGGDPVTVFRLASLAKPLGMGVKASGGIRSGIDAVLAVGAGA 215
Query: 249 NALVAGSAV 257
+ + SAV
Sbjct: 216 DIIGTSSAV 224
>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId:
303]}
Length = 216
Score = 31.8 bits (72), Expect = 0.059
Identities = 27/183 (14%), Positives = 57/183 (31%), Gaps = 14/183 (7%)
Query: 94 GRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQ---SS 150
R +P ITI + + P+ D + +E R +KA + E +
Sbjct: 17 ARILPVITIAR--EEDILPLADALAAGGIRTLEVTLRSQHGLKAIQVLREQRPELCVGAG 74
Query: 151 TIHLHRTLNQIKDLGAKAGV--VLNPATSLSAIE----CVLDVVDLVLIM-SVNPGF-GG 202
T+ ++ GA+ V + + ++ + + IM G+
Sbjct: 75 TVLDRSMFAAVEAAGAQFVVTPGITEDILEAGVDSEIPLLPGISTPSEIMMGYALGYRRF 134
Query: 203 QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKD 262
+ F ++ ++ G + GGV P N + V + + +
Sbjct: 135 KLFPAEISGGVAAIKAFGGPFGDIRFCPT-GGVNPANVRNYMALPNVMCVGTTWMLDSSW 193
Query: 263 YAE 265
Sbjct: 194 IKN 196
>d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP
decarboxylase) {Escherichia coli [TaxId: 562]}
Length = 231
Score = 31.8 bits (71), Expect = 0.059
Identities = 11/49 (22%), Positives = 18/49 (36%)
Query: 225 VNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
E + + AG + +V G V + D A+ +K I S
Sbjct: 181 RPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINAS 229
>d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 254
Score = 31.3 bits (71), Expect = 0.088
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 231 VDGGVG-PKNAYKVIEAGANALVAGSAVFGAKD---YAEAIK 268
GGV P +A ++ GA+ + GS +F +++ YA AI
Sbjct: 194 AAGGVTTPADAALMMHLGADGVFVGSGIFKSENPEKYARAIV 235
>d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis
[TaxId: 1423]}
Length = 229
Score = 31.2 bits (70), Expect = 0.11
Identities = 33/215 (15%), Positives = 66/215 (30%), Gaps = 28/215 (13%)
Query: 74 EQVKAVELAGCDWIHV---DVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQR 130
EQ++ + +G D + + D + V + + V L P + ++ +
Sbjct: 23 EQLEILCESGTDAVIIGGSDGVTEDNV--LRMMSKVRRFLVPCVLEVSAIEAIVPGFDLY 80
Query: 131 VPDFIKAGADIVSVHCEQSSTIHL----------HRTLNQIKDLGAKAGVVLNPATSLSA 180
+ + + + I + KA + L+
Sbjct: 81 FIPSVLNSKNADWIVGMHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNM 140
Query: 181 IECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNA 240
D+V V+ F + D+ + K V + G G K+A
Sbjct: 141 D-------DIVAYARVSELLQLPIFYLEYSGVLGDIEAVKKTKAVLETSTLFYGGGIKDA 193
Query: 241 YKVIE--AGANALVAGSAVF----GAKDYAEAIKG 269
+ A+ +V G+AV+ A A+KG
Sbjct: 194 ETAKQYAEHADVIVVGNAVYEDFDRALKTVAAVKG 228
>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus
influenzae [TaxId: 727]}
Length = 212
Score = 30.3 bits (68), Expect = 0.17
Identities = 8/61 (13%), Positives = 15/61 (24%), Gaps = 1/61 (1%)
Query: 205 FIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYA 264
F + ++ + + GG+G N + GS K
Sbjct: 134 FPAEASGGVKMIKALLGPYAQLQIMPT-GGIGLHNIRDYLAIPNIVACGGSWFVEKKLIQ 192
Query: 265 E 265
Sbjct: 193 S 193
>d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus
subtilis [TaxId: 1423]}
Length = 251
Score = 30.2 bits (68), Expect = 0.23
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 231 VDGGVG-PKNAYKVIEAGANALVAGSAVFGAKD---YAEAIK 268
VD G+G PK+A +E GA+ ++ +AV GA D A A+K
Sbjct: 182 VDAGIGSPKDAAYAMELGADGVLLNTAVSGADDPVKMARAMK 223
>d1vqta1 c.1.2.3 (A:1-198) Orotidine 5'-monophosphate decarboxylase
(OMP decarboxylase) {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 30.1 bits (67), Expect = 0.24
Identities = 19/141 (13%), Positives = 45/141 (31%), Gaps = 1/141 (0%)
Query: 131 VPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDL 190
+P ++ T+H ++ + + L+++E L+
Sbjct: 58 IPSTVERSIKSWDHPAIIGFTVHSCAGYESVERALSATDKHVFVVVKLTSMEGSLEDYMD 117
Query: 191 VLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANA 250
+ G ++ L G+ ++ D + ++ AN
Sbjct: 118 RIEKLNKLGCDFVLPGPWAKALREKIKGKILVPGIRMEVKADDQKDVV-TLEEMKGIANF 176
Query: 251 LVAGSAVFGAKDYAEAIKGIK 271
V G ++ +++ E IK IK
Sbjct: 177 AVLGREIYLSENPREKIKRIK 197
>d1dqwa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP
decarboxylase) {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 267
Score = 29.8 bits (66), Expect = 0.30
Identities = 18/144 (12%), Positives = 38/144 (26%), Gaps = 8/144 (5%)
Query: 134 FIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLS-----AIECVLDVV 188
I ADI + H + L Q + K L LS +
Sbjct: 111 RIAEWADITNAHGV--VGPGIVSGLKQAAEEVTKEPRGLLMLAELSCKGSLSTGEYTKGT 168
Query: 189 DLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGA 248
+ + G + + + + G + V+ G+
Sbjct: 169 VDIAKSDKDFVIGFIAQRDMGGRDEGYDWLIMTPGVGLDDKGDALGQQYRTVDDVVSTGS 228
Query: 249 NALVAGSAVFG-AKDYAEAIKGIK 271
+ ++ G +F +D + +
Sbjct: 229 DIIIVGRGLFAKGRDAKVEGERYR 252
>d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 70
Score = 27.7 bits (62), Expect = 0.32
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 234 GVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK 274
G+ + K+ EAG + V A K+ IKGI +K
Sbjct: 17 GINANDVKKLEEAGFHT-VEAVAYAPKKELIN-IKGISEAK 55
>d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid
phosphoribosyltransferase (Nicotinate-nucleotide
pyrophosphorylase, NadC), C-terminal domain {Thermotoga
maritima [TaxId: 2336]}
Length = 170
Score = 29.2 bits (65), Expect = 0.36
Identities = 8/55 (14%), Positives = 19/55 (34%)
Query: 207 ESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAK 261
+++ D+ R + N +EV GG+ +N + + +
Sbjct: 106 NLSPEEVKDISRRIKDINPNVIVEVSGGITEENVSLYDFETVDVISSSRLTLQEV 160
>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId:
562]}
Length = 213
Score = 29.1 bits (65), Expect = 0.44
Identities = 25/146 (17%), Positives = 52/146 (35%), Gaps = 14/146 (9%)
Query: 133 DFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV--VLNPATSLSAIECVLDVVDL 190
D I+A A V + T+ + L ++ + GA+ + L +A E + ++
Sbjct: 55 DAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPGLTEPLLKAATEGTIPLIPG 114
Query: 191 VLIMS-----VNPGF-GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVI 244
+ +S ++ G + F + L+ + + GG+ P N +
Sbjct: 115 ISTVSELMLGMDYGLKEFKFFPAEANGGVKALQAIAGPFSQVRFCPT-GGISPANYRDYL 173
Query: 245 EAGANALVAGSAVF-----GAKDYAE 265
+ + GS + A DY
Sbjct: 174 ALKSVLCIGGSWLVPADALEAGDYDR 199
>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus
lactis, isozyme B [TaxId: 1358]}
Length = 311
Score = 28.8 bits (63), Expect = 0.68
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 227 PWIEVDGGVGPKNAYKVIEAGANALVAGSAVFG 259
P I + G ++ ++ AGA+A+ G+A F
Sbjct: 243 PIIGMGGVANAQDVLEMYMAGASAVAVGTANFA 275
>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain
4 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 312
Score = 28.8 bits (63), Expect = 0.68
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Query: 199 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVF 258
G G + ++ ++ + R G P + G ++ + + +GA+ L SAV
Sbjct: 232 GVSGTAIRPIALRAVTTIARAL--PGF-PILATGGIDSAESGLQFLHSGASVLQVCSAVQ 288
Query: 259 --GAKDYAEAIKGIK 271
+ G+K
Sbjct: 289 NQDFTVIQDYCTGLK 303
>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate
dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId:
1314]}
Length = 365
Score = 28.9 bits (64), Expect = 0.71
Identities = 28/140 (20%), Positives = 51/140 (36%), Gaps = 8/140 (5%)
Query: 129 QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVV 188
+R +AGAD + + + + R + +I+ ++ + + D
Sbjct: 110 ERAEALFEAGADAIVIDTAHGHSAGVLRKIAEIRAHFPNRTLIAGNIATAEGARALYDAG 169
Query: 189 DLVLIM-----SVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYK 242
V+ + S+ QV I D + E G I DGG+ + K
Sbjct: 170 VDVVKVGIGPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGK--TIIADGGIKYSGDIVK 227
Query: 243 VIEAGANALVAGSAVFGAKD 262
+ AG NA++ GS G +
Sbjct: 228 ALAAGGNAVMLGSMFAGTDE 247
>d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma
brucei [TaxId: 5691]}
Length = 312
Score = 28.8 bits (63), Expect = 0.80
Identities = 14/76 (18%), Positives = 29/76 (38%)
Query: 183 CVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYK 242
V+D + +++ GFGG ++++ G + A+
Sbjct: 200 LVIDPANETVVIKPKQGFGGLGGKYVLPTALANVNAFFRRCPDKLVFGCGGVYSGEEAFL 259
Query: 243 VIEAGANALVAGSAVF 258
I AGA+ + G+A+
Sbjct: 260 HILAGASMVQVGTALH 275
>d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 243
Score = 28.3 bits (63), Expect = 0.97
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 231 VDGGVG-PKNAYKVIEAGANALVAGSAVFGAKD---YAEAIK 268
VD GVG +A +E G A++ +A+ AKD AEA+K
Sbjct: 184 VDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMK 225
>d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase
{Archaeon Thermoproteus tenax [TaxId: 2271]}
Length = 251
Score = 28.1 bits (62), Expect = 1.1
Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 7/77 (9%)
Query: 202 GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKN-------AYKVIEAGANALVAG 254
G ++ + ++ + + GG K V+EAGA + G
Sbjct: 170 GADAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVG 229
Query: 255 SAVFGAKDYAEAIKGIK 271
V+ +D + + +
Sbjct: 230 RNVWQRRDALKFARALA 246
>d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 64
Score = 25.8 bits (57), Expect = 1.3
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 234 GVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK 274
G+ + K+ E+G + A KD E IKGI +K
Sbjct: 10 GITMADVKKLRESGLHT-AEAVAYAPRKDLLE-IKGISEAK 48
>d1u7na_ c.77.1.4 (A:) Fatty acid/phospholipid synthesis protein
PlsX {Enterococcus faecalis [TaxId: 1351]}
Length = 329
Score = 28.0 bits (62), Expect = 1.4
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 87 IHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHC 146
I VD M G P + V+ A + D P D+ + E + +I +I +H
Sbjct: 3 IAVDAMGGDNAPQAIV-EGVMLAKQ---DFP-DIEFQLYGKEAEIKKYITDEKNITIIHT 57
Query: 147 EQS 149
++
Sbjct: 58 DEK 60
>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus
lactis, isozyme A [TaxId: 1358]}
Length = 311
Score = 27.7 bits (60), Expect = 1.7
Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 192 LIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANA 250
+++ GFGG + ++++R I GG+ ++A++ + GA
Sbjct: 208 VVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATM 267
Query: 251 LVAGSAVF 258
L G+A+
Sbjct: 268 LQIGTALH 275
>d3bofa2 c.1.26.1 (A:1-300) Cobalamin-dependent methionine synthase
MetH, N-terminal domain {Thermotoga maritima [TaxId:
2336]}
Length = 300
Score = 27.7 bits (60), Expect = 1.9
Identities = 4/24 (16%), Positives = 15/24 (62%)
Query: 133 DFIKAGADIVSVHCEQSSTIHLHR 156
+I++G+D++ + ++ + L +
Sbjct: 52 SYIESGSDVILTNTFGATRMKLRK 75
>d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle
domain {Thermus thermophilus [TaxId: 274]}
Length = 73
Score = 25.1 bits (55), Expect = 2.9
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 234 GVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI--KTSKR 275
GVGPK A ++ A L+A + + G + G+ + ++R
Sbjct: 17 GVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAER 60
>d1x9la_ b.2.10.1 (A:) Hypothetical protein DR1885 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 149
Score = 26.1 bits (57), Expect = 3.1
Identities = 9/67 (13%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 87 IHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADI-VSVH 145
+ G + L + A +T H+M++ ++ +K G + +++
Sbjct: 74 LMTTTHSGGMAGMKMVPWLTIPARGTLTLQRDGDHVMLMGLKRP----LKVGETVNITLK 129
Query: 146 CEQSSTI 152
T+
Sbjct: 130 ATDGRTL 136
>d1yg2a_ a.4.5.61 (A:) Hypothetical protein AphA {Vibrio cholerae
[TaxId: 666]}
Length = 178
Score = 26.5 bits (58), Expect = 3.2
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 216 LRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANAL 251
L +M + V +E G + Y + +AG +AL
Sbjct: 43 LNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRSAL 78
>d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 361
Score = 26.8 bits (58), Expect = 3.2
Identities = 5/24 (20%), Positives = 13/24 (54%)
Query: 133 DFIKAGADIVSVHCEQSSTIHLHR 156
+F++AG++++ +S L
Sbjct: 52 EFLRAGSNVMQTFTFYASEDKLEN 75
>d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 367
Score = 26.1 bits (56), Expect = 5.1
Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 9/84 (10%)
Query: 183 CVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG-----GVG- 236
+ ++ +S G G E+ LR + + + G GVG
Sbjct: 247 GIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGG 306
Query: 237 ---PKNAYKVIEAGANALVAGSAV 257
++A + I AGA+ + +A+
Sbjct: 307 VSSGQDALEKIRAGASLVQLYTAL 330
>d1k75a_ c.82.1.2 (A:) L-histidinol dehydrogenase HisD
{Escherichia coli [TaxId: 562]}
Length = 431
Score = 26.2 bits (57), Expect = 5.4
Identities = 11/41 (26%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 43 IVKASARVDKFSKSDIIVSPSILSANFAKLGEQVK-AVELA 82
+ + SA+ DK + + + VS ++A +L +++K A+ +A
Sbjct: 48 LREYSAKFDKTTVTALKVSAEEIAAASERLSDELKQAMAVA 88
>d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle
domain {Mycobacterium leprae [TaxId: 1769]}
Length = 71
Score = 24.3 bits (53), Expect = 5.7
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 234 GVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI--KTSKR 275
GVGP+ A + A + + + GI + ++R
Sbjct: 16 GVGPRLAMATLAVHDAAALRQALADSDVASLTRVPGIGRRGAER 59
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.386
Gapped
Lambda K H
0.267 0.0427 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,008,038
Number of extensions: 46395
Number of successful extensions: 212
Number of sequences better than 10.0: 1
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 54
Length of query: 281
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 197
Effective length of database: 1,254,276
Effective search space: 247092372
Effective search space used: 247092372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)