BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023495
(281 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 69/123 (56%), Gaps = 6/123 (4%)
Query: 2 IPESLTARLLNVVVLDVHSNQLKCLPNSI-GCLSKLKVLDVSGNLLESLPKTIEN-CRSL 59
+P + A+ LD+ +N LK LPN + L+ L L + GN L+SLP + N SL
Sbjct: 22 VPTGIPAQ---TTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSL 78
Query: 60 EELNANFNKLRQLPDTIGFELINLKTLSINCNKIVILPQSL-THLTSLRVLDARLNCLKS 118
LN + N+L+ LP+ + +L LK L++N N++ LP + LT L+ L N LKS
Sbjct: 79 TYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS 138
Query: 119 LPE 121
+P+
Sbjct: 139 VPD 141
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 3/111 (2%)
Query: 2 IPESLTARLLNVVVLDVHSNQLKCLPNSI-GCLSKLKVLDVSGNLLESLPKTI-ENCRSL 59
+P + L ++ L + N+L+ LPN + L+ L L++S N L+SLP + + L
Sbjct: 43 LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQL 102
Query: 60 EELNANFNKLRQLPDTIGFELINLKTLSINCNKIVILPQSL-THLTSLRVL 109
+EL N N+L+ LPD + +L LK L + N++ +P + LTSL+ +
Sbjct: 103 KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 153
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 86/180 (47%), Gaps = 7/180 (3%)
Query: 16 LDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLP-KTIENCRSLEELNANFNKLRQLPD 74
+D S +L +P++I + K LD+ N L SLP K L L N NKL+ LP
Sbjct: 21 VDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA 78
Query: 75 TIGFELINLKTLSINCNKIVILPQSL-THLTSLRVLDARLNCLKSLPEDXXXXXXXXXXX 133
I EL NL+TL + NK+ LP + L +L L N LKSLP
Sbjct: 79 GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP-RVFDSLTKLTY 137
Query: 134 XSQNFQYLETLPYSI-GLLMSLVELDVSYNKITTLPD-SIGCLRKLQKLSLEGNPLVSPP 191
S + L++LP + L SL EL + N++ +P+ + L +L+ L L+ N L P
Sbjct: 138 LSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP 197
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 68/120 (56%), Gaps = 6/120 (5%)
Query: 2 IPESLTARLLNVVVLDVHSNQLKCLPNSI-GCLSKLKVLDVSGNLLESLPKTI-ENCRSL 59
+P + +L+N+ L + NQLK LP + L+KL L + N L+SLPK + + SL
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159
Query: 60 EELNANFNKLRQLPDTIGFELINLKTLSINCNKIVILPQ----SLTHLTSLRVLDARLNC 115
+EL N+L+++P+ +L LKTL ++ N++ +P+ SL L L++ + +C
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 57/112 (50%), Gaps = 2/112 (1%)
Query: 12 NVVVLDVHSNQL-KCLPNSIGCLSKLKVLDVSGNLLESLPKTI-ENCRSLEELNANFNKL 69
N +L +H NQ+ K P L LK L + N L +LP + ++ L L+ N+L
Sbjct: 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100
Query: 70 RQLPDTIGFELINLKTLSINCNKIVILPQSLTHLTSLRVLDARLNCLKSLPE 121
LP + L++LK L + CNK+ LP+ + LT L L N LKS+P
Sbjct: 101 TVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH 152
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 2 IPESLTARLLNVVVLDVHSNQLKCLPNSI-GCLSKLKVLDVSGNLLESLPKTIENCRSLE 60
+P + L + VLD+ +NQL LP+++ L LK L + N L LP+ IE L
Sbjct: 79 LPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLT 138
Query: 61 ELNANFNKLRQLP 73
L + N+L+ +P
Sbjct: 139 HLALDQNQLKSIP 151
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 67/120 (55%), Gaps = 6/120 (5%)
Query: 2 IPESLTARLLNVVVLDVHSNQLKCLPNSI-GCLSKLKVLDVSGNLLESLPKTI-ENCRSL 59
+P + +L N+ L + NQL+ LP+ + L+ L L + N L+SLPK + + +L
Sbjct: 100 LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNL 159
Query: 60 EELNANFNKLRQLPDTIGFELINLKTLSINCNKIVILPQS----LTHLTSLRVLDARLNC 115
L+ + N+L+ LP+ + +L LK LS+N N++ +P LT LT + +L+ +C
Sbjct: 160 TRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNPWDC 219
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 27/179 (15%)
Query: 30 IGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSIN 89
I L ++ L + GN L + ++ +L L N+L+ LP+ + +L NLK L +
Sbjct: 59 IQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117
Query: 90 CNKIVILPQSL-THLTSLRVLDARLNCLKSLPEDXXXXXXXXXXXXSQNFQYLETLPYSI 148
N++ LP + LT+L L N L+SLP+
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDK---------------------- 155
Query: 149 GLLMSLVELDVSYNKITTLPDSI-GCLRKLQKLSLEGNPLVSPPMDVVEQGLSAVKGYL 206
L +L LD+ N++ +LP+ + L +L++LSL N L S P V ++ S +L
Sbjct: 156 --LTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWL 212
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 66/111 (59%), Gaps = 3/111 (2%)
Query: 2 IPESLTARLLNVVVLDVHSNQLKCLPNSI-GCLSKLKVLDVSGNLLESLPKTI-ENCRSL 59
+P + +L N+ L + NQL+ LP+ + L+ L L+++ N L+SLPK + + +L
Sbjct: 100 LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL 159
Query: 60 EELNANFNKLRQLPDTIGFELINLKTLSINCNKIVILPQSL-THLTSLRVL 109
EL+ ++N+L+ LP+ + +L LK L + N++ +P + LTSL+ +
Sbjct: 160 TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 210
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 27/170 (15%)
Query: 30 IGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSIN 89
I L ++ L + GN L + ++ +L L N+L+ LP+ + +L NLK L +
Sbjct: 59 IQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117
Query: 90 CNKIVILPQSL-THLTSLRVLDARLNCLKSLPEDXXXXXXXXXXXXSQNFQYLETLPYSI 148
N++ LP + LT+L L+ N L+SLP+
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK---------------------- 155
Query: 149 GLLMSLVELDVSYNKITTLPDSI-GCLRKLQKLSLEGNPLVSPPMDVVEQ 197
L +L ELD+SYN++ +LP+ + L +L+ L L N L S P V ++
Sbjct: 156 --LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 203
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 52/85 (61%), Gaps = 11/85 (12%)
Query: 12 NVVVLDVHSNQL-----KCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANF 66
+++VL++ SN L +CLP K+KVLD+ N + S+PK + + ++L+ELN
Sbjct: 429 SILVLNLSSNMLTGSVFRCLP------PKVKVLDLHNNRIMSIPKDVTHLQALQELNVAS 482
Query: 67 NKLRQLPDTIGFELINLKTLSINCN 91
N+L+ +PD + L +L+ + ++ N
Sbjct: 483 NQLKSVPDGVFDRLTSLQYIWLHDN 507
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 33 LSKLKVLDVSGNLLES--LPKTIENCRSLEELNANFNKL-----RQLPDTIGFELINLKT 85
+S L+ LDVS N L S +T S+ LN + N L R LP + K
Sbjct: 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKV-------KV 454
Query: 86 LSINCNKIVILPQSLTHLTSLRVLDARLNCLKSLPE 121
L ++ N+I+ +P+ +THL +L+ L+ N LKS+P+
Sbjct: 455 LDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPD 490
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 157 LDVSYNKITTLPDSIGCLRKLQKLSLEGNPLVSPPMDVVEQ 197
LD+ N+I ++P + L+ LQ+L++ N L S P V ++
Sbjct: 455 LDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDR 495
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 80/204 (39%), Gaps = 30/204 (14%)
Query: 16 LDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDT 75
L + NQL LP L+ L VS N L SLP L N L LP
Sbjct: 126 LWIFGNQLTSLPV---LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPS- 181
Query: 76 IGFELINLKTLSINCNKIVILPQSLTHLTSLRVLDARLNCLKSLPEDXXXXXXXXXXXXS 135
L+ LS++ N++ LP + L L + RL L +LP S
Sbjct: 182 ------GLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS 235
Query: 136 QNFQYLETLPYSIGLLM--------------SLVELDVSYNKITTLPDSIGCLRKLQKLS 181
L LP + LM L+ L V N++T LP+S+ L ++
Sbjct: 236 -----LPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVN 290
Query: 182 LEGNPLVSPPMDVVEQGLSAVKGY 205
LEGNPL + + + +++ GY
Sbjct: 291 LEGNPLSERTLQALRE-ITSAPGY 313
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 88/218 (40%), Gaps = 41/218 (18%)
Query: 2 IPESLTARLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEE 61
+P+ L A + +V+ D + L LP +L+ L+VSGN L SLP L
Sbjct: 55 LPDCLPAHITTLVIPDNNLTSLPALP------PELRTLEVSGNQLTSLPVLPPGLLELSI 108
Query: 62 LNANFNKLRQLPDTI------GFELIN-------LKTLSINCNKIVILPQSLTHLTSLRV 108
+ L LP + G +L + L+ LS++ N++ LP + L L
Sbjct: 109 FSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWA 168
Query: 109 LDARLNCLKSLPEDXXXXXXXXXXXXSQNFQYLETLPYSI--------------GLLMSL 154
+ +L L LP S L TLP + L L
Sbjct: 169 YNNQLTSLPMLPSGLQELSVSDNQLAS-----LPTLPSELYKLWAYNNRLTSLPALPSGL 223
Query: 155 VELDVSYNKITTLPDSIGCLRKLQKLSLEGNPLVSPPM 192
EL VS N++T+LP +L++L + GN L S PM
Sbjct: 224 KELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM 258
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 83/191 (43%), Gaps = 42/191 (21%)
Query: 13 VVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQL 72
+ VL++ N L LP + L+ LD N L +LP E SL+ L+ + N+L L
Sbjct: 82 ITVLEITQNALISLPE---LPASLEYLDACDNRLSTLP---ELPASLKHLDVDNNQLTXL 135
Query: 73 PDTIGFELINLKTLSINCNKIVILPQSLTHLTSLRVLDARLNCLKSLPEDXXXXXXXXXX 132
P+ L+ ++ + N++ LP+ T L L V + +L L LPE
Sbjct: 136 PELPAL----LEYINADNNQLTXLPELPTSLEVLSVRNNQLTFLPELPES---------- 181
Query: 133 XXSQNFQYLETLPYSIGLLMSL----------VELDVSY----NKITTLPDSIGCLRKLQ 178
LE L S LL SL E ++ + N+IT +P++I L
Sbjct: 182 --------LEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTC 233
Query: 179 KLSLEGNPLVS 189
+ LE NPL S
Sbjct: 234 TIILEDNPLSS 244
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 23 LKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELIN 82
+CLP ++KVLD+ N ++S+PK + +L+ELN N+L+ +PD I L +
Sbjct: 416 FRCLP------PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTS 469
Query: 83 LKTLSINCN 91
L+ + ++ N
Sbjct: 470 LQKIWLHTN 478
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 157 LDVSYNKITTLPDSIGCLRKLQKLSLEGNPLVSPPMDVVEQGLSAVKGYL 206
LD+ NKI ++P + L LQ+L++ N L S P + ++ S K +L
Sbjct: 426 LDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWL 475
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 10/94 (10%)
Query: 33 LSKLKVLDVSGNLLESLPKTIENC---RSLEELNANFNKLRQLPDTIGFELI--NLKTLS 87
+ L+ LD+S N + S + +C +SL LN + N L DTI F + +K L
Sbjct: 373 MKSLQQLDISQNSV-SYDEKKGDCSWTKSLLSLNMSSNIL---TDTI-FRCLPPRIKVLD 427
Query: 88 INCNKIVILPQSLTHLTSLRVLDARLNCLKSLPE 121
++ NKI +P+ + L +L+ L+ N LKS+P+
Sbjct: 428 LHSNKIKSIPKQVVKLEALQELNVASNQLKSVPD 461
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 10/114 (8%)
Query: 10 LLNVVVLDVHSNQLKCLPNSIGCLSKLKVLD---VSGNLLESLPKTI-ENCRSLEELNAN 65
L + L + +NQL LP +G L LD + GN L+SLP + + L+EL N
Sbjct: 82 LTELGTLGLANNQLASLP--LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN 139
Query: 66 FNKLRQLPDTIGFELINLKTLSINCNKIVILPQS----LTHLTSLRVLDARLNC 115
N+L+ +P +L NL+TLS++ N++ +P L L ++ + + +C
Sbjct: 140 TNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 15 VLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLP-KTIENCRSLEELNANFNKLRQLP 73
LD+ NQL+ LP L L VLDVS N L SLP + L+EL N+L+ LP
Sbjct: 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 74 DTIGFELINLKTLSINCNKIVILPQSLTHLTSLRVLDARL---NCLKSLPE 121
+ L+ LS+ N++ LP L L L LD L N L ++P+
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTELPAGL--LNGLENLDTLLLQENSLYTIPK 189
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 5/54 (9%)
Query: 141 LETLPYSIGLLMSLVELDVSYNKITTLPDSIGCLR---KLQKLSLEGNPLVSPP 191
L++LP L +L LDVS+N++T+LP +G LR +LQ+L L+GN L + P
Sbjct: 89 LQSLPLLGQTLPALTVLDVSFNRLTSLP--LGALRGLGELQELYLKGNELKTLP 140
Score = 34.7 bits (78), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 31 GCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINC 90
G L L LD+S N L+SLP + +L L+ +FN+L LP L L+ L +
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 91 NKIVILPQS-LTHLTSLRVLDARLNCLKSLP 120
N++ LP LT L L N L LP
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELP 164
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 15 VLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLP-KTIENCRSLEELNANFNKLRQLP 73
LD+ NQL+ LP L L VLDVS N L SLP + L+EL N+L+ LP
Sbjct: 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 74 DTIGFELINLKTLSINCNKIVILPQSLTHLTSLRVLDARL---NCLKSLPE 121
+ L+ LS+ N++ LP L L L LD L N L ++P+
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTELPAGL--LNGLENLDTLLLQENSLYTIPK 189
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 5/54 (9%)
Query: 141 LETLPYSIGLLMSLVELDVSYNKITTLPDSIGCLR---KLQKLSLEGNPLVSPP 191
L++LP L +L LDVS+N++T+LP +G LR +LQ+L L+GN L + P
Sbjct: 89 LQSLPLLGQTLPALTVLDVSFNRLTSLP--LGALRGLGELQELYLKGNELKTLP 140
Score = 34.7 bits (78), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 31 GCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINC 90
G L L LD+S N L+SLP + +L L+ +FN+L LP L L+ L +
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 91 NKIVILPQS-LTHLTSLRVLDARLNCLKSLP 120
N++ LP LT L L N L LP
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELP 164
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 10/114 (8%)
Query: 10 LLNVVVLDVHSNQLKCLPNSIGCLSKLKVLD---VSGNLLESLPKTI-ENCRSLEELNAN 65
L + L + +NQL LP +G L LD + GN L+SLP + + L+EL N
Sbjct: 82 LTELGTLGLANNQLASLP--LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN 139
Query: 66 FNKLRQLPDTIGFELINLKTLSINCNKIVILPQS----LTHLTSLRVLDARLNC 115
N+L+ +P +L NL+TLS++ N++ +P L L ++ + + +C
Sbjct: 140 TNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 46/110 (41%), Gaps = 25/110 (22%)
Query: 78 FELINLKTLSINCNKIVILPQSLTHLTSLRVLDARLNCLKSLPEDXXXXXXXXXXXXSQN 137
F+ L L +N N + LP + +L++LRVLD N L SLP +
Sbjct: 244 FKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAE--------------- 288
Query: 138 FQYLETLPYSIGLLMSLVELDVSYNKITTLPDSIGCLRKLQKLSLEGNPL 187
+G L N +TTLP G L LQ L +EGNPL
Sbjct: 289 ----------LGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPL 328
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 16 LDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDT 75
L ++ N L LP I LS L+VLD+S N L SLP + +C L+ N + LP
Sbjct: 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWE 311
Query: 76 IGFELINLKTLSINCN 91
G L NL+ L + N
Sbjct: 312 FG-NLCNLQFLGVEGN 326
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
Query: 15 VLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPD 74
LD+ + Q+ + +I L L ++GN L LP I+N +L L+ + N+L LP
Sbjct: 228 ALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPA 287
Query: 75 TIGFELINLKTLSINCNKIVILPQSLTHLTSLRVLDARLNCLK 117
+G LK N + LP +L +L+ L N L+
Sbjct: 288 ELG-SCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE 329
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 10 LLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKL 69
L N+ VLD+ N+L LP +G +LK N++ +LP N +L+ L N L
Sbjct: 269 LSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPL 328
Query: 70 RQ 71
+
Sbjct: 329 EK 330
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 33 LSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINCNK 92
LS L++ ++S N+ + L L N N L +LP I L NL+ L ++ N+
Sbjct: 231 LSNLQIFNISANIFK--------YDFLTRLYLNGNSLTELPAEIK-NLSNLRVLDLSHNR 281
Query: 93 IVILPQSLTHLTSLRVLDARLNCLKSLP 120
+ LP L L+ N + +LP
Sbjct: 282 LTSLPAELGSCFQLKYFYFFDNMVTTLP 309
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 15 VLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLP-KTIENCRSLEELNANFNKLRQLP 73
LD+ NQL+ LP L L VLDVS N L SLP + L+EL N+L+ LP
Sbjct: 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 74 DTIGFELINLKTLSINCNKIVILPQSLTHLTSLRVLDARL---NCLKSLPE 121
+ L+ LS+ N++ LP L L L LD L N L ++P+
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTELPAGL--LNGLENLDTLLLQENSLYTIPK 189
Score = 34.7 bits (78), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 5/54 (9%)
Query: 141 LETLPYSIGLLMSLVELDVSYNKITTLPDSIGCLR---KLQKLSLEGNPLVSPP 191
L++LP L +L LDVS+N++T+LP +G LR +LQ+L L+GN L + P
Sbjct: 89 LQSLPLLGQTLPALTVLDVSFNRLTSLP--LGALRGLGELQELYLKGNELKTLP 140
Score = 34.3 bits (77), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%)
Query: 31 GCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINC 90
G L L LD+S N L+SLP + +L L+ +FN+L LP L L+ L +
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 91 NKIVILPQSL 100
N++ LP L
Sbjct: 134 NELKTLPPGL 143
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 74/172 (43%), Gaps = 18/172 (10%)
Query: 14 VVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLP 73
V L++ S L P+ LS L+ + L LP T + LE L N LR LP
Sbjct: 84 VALELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALP 143
Query: 74 DTIGFELINLKTLSIN-CNKIVILPQSLTHLTSLRVLDARLNCLKSLPEDXXXXXXXXXX 132
+I L L+ LSI C ++ LP+ L + +N L+SL
Sbjct: 144 ASIA-SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN-LQSL------------- 188
Query: 133 XXSQNFQYLETLPYSIGLLMSLVELDVSYNKITTLPDSIGCLRKLQKLSLEG 184
+ + +LP SI L +L L + + ++ L +I L KL++L L G
Sbjct: 189 --RLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG 238
Score = 30.8 bits (68), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 52/130 (40%), Gaps = 11/130 (8%)
Query: 69 LRQLPDTIGFELINLKTLSINCNKIVILPQSLTHLTSLRVLDARLNCLKSLPEDXXXXXX 128
L Q PD F L +L+ +I+ + LP + L L N L++LP
Sbjct: 93 LPQFPDQ-AFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNR 151
Query: 129 XXXXXXSQNFQYLETLPYSIGL---------LMSLVELDVSYNKITTLPDSIGCLRKLQK 179
+ E LP + L++L L + + I +LP SI L+ L+
Sbjct: 152 LRELSIRACPELTE-LPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKS 210
Query: 180 LSLEGNPLVS 189
L + +PL +
Sbjct: 211 LKIRNSPLSA 220
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 15 VLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLP-KTIENCRSLEELNANFNKLRQLP 73
LD+ NQL+ LP L L VLDVS N L SLP + L+EL N+L+ LP
Sbjct: 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 74 DTIGFELINLKTLSINCNKIVILPQSLTHLTSLRVLDARL---NCLKSLPE 121
+ L+ LS+ N + LP L L L LD L N L ++P+
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGL--LNGLENLDTLLLQENSLYTIPK 189
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 5/54 (9%)
Query: 141 LETLPYSIGLLMSLVELDVSYNKITTLPDSIGCLR---KLQKLSLEGNPLVSPP 191
L++LP L +L LDVS+N++T+LP +G LR +LQ+L L+GN L + P
Sbjct: 89 LQSLPLLGQTLPALTVLDVSFNRLTSLP--LGALRGLGELQELYLKGNELKTLP 140
Score = 34.7 bits (78), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 31 GCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINC 90
G L L LD+S N L+SLP + +L L+ +FN+L LP L L+ L +
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 91 NKIVILPQS-LTHLTSLRVLDARLNCLKSLP 120
N++ LP LT L L N L LP
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELP 164
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 15 VLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLP-KTIENCRSLEELNANFNKLRQLP 73
LD+ NQL+ LP L L VLDVS N L SLP + L+EL N+L+ LP
Sbjct: 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 74 DTIGFELINLKTLSINCNKIVILPQSLTHLTSLRVLDARL---NCLKSLPE 121
+ L+ LS+ N++ LP L L L LD L N L ++P+
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTELPAGL--LNGLENLDTLLLQENSLYTIPK 189
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 5/54 (9%)
Query: 141 LETLPYSIGLLMSLVELDVSYNKITTLPDSIGCLR---KLQKLSLEGNPLVSPP 191
L++LP L +L LDVS+N++T+LP +G LR +LQ+L L+GN L + P
Sbjct: 89 LQSLPLLGQTLPALTVLDVSFNRLTSLP--LGALRGLGELQELYLKGNELKTLP 140
Score = 34.3 bits (77), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%)
Query: 31 GCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINC 90
G L L LD+S N L+SLP + +L L+ +FN+L LP L L+ L +
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 91 NKIVILPQSL 100
N++ LP L
Sbjct: 134 NELKTLPPGL 143
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 15 VLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLP-KTIENCRSLEELNANFNKLRQLP 73
LD+ NQL+ LP L L VLDVS N L SLP + L+EL N+L+ LP
Sbjct: 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 74 DTIGFELINLKTLSINCNKIVILPQSLTHLTSLRVLDARL---NCLKSLPE 121
+ L+ LS+ N + LP L L L LD L N L ++P+
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGL--LNGLENLDTLLLQENSLYTIPK 189
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 5/54 (9%)
Query: 141 LETLPYSIGLLMSLVELDVSYNKITTLPDSIGCLR---KLQKLSLEGNPLVSPP 191
L++LP L +L LDVS+N++T+LP +G LR +LQ+L L+GN L + P
Sbjct: 89 LQSLPLLGQTLPALTVLDVSFNRLTSLP--LGALRGLGELQELYLKGNELKTLP 140
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 31 GCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINC 90
G L L LD+S N L+SLP + +L L+ +FN+L LP L L+ L +
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 91 NKIVILPQS-LTHLTSLRVLDARLNCLKSLP 120
N++ LP LT L L N L LP
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELP 164
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 15 VLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLP-KTIENCRSLEELNANFNKLRQLP 73
LD+ NQL+ LP L L VLDVS N L SLP + L+EL N+L+ LP
Sbjct: 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 74 DTIGFELINLKTLSINCNKIVILPQSLTHLTSLRVLDARL---NCLKSLPE 121
+ L+ LS+ N + LP L L L LD L N L ++P+
Sbjct: 141 PGLLTPTPKLEKLSLANNDLTELPAGL--LNGLENLDTLLLQENSLYTIPK 189
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 5/54 (9%)
Query: 141 LETLPYSIGLLMSLVELDVSYNKITTLPDSIGCLR---KLQKLSLEGNPLVSPP 191
L++LP L +L LDVS+N++T+LP +G LR +LQ+L L+GN L + P
Sbjct: 89 LQSLPLLGQTLPALTVLDVSFNRLTSLP--LGALRGLGELQELYLKGNELKTLP 140
Score = 34.3 bits (77), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%)
Query: 31 GCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINC 90
G L L LD+S N L+SLP + +L L+ +FN+L LP L L+ L +
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 91 NKIVILPQSL 100
N++ LP L
Sbjct: 134 NELKTLPPGL 143
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 15 VLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLP-KTIENCRSLEELNANFNKLRQLP 73
LD+ NQL+ LP L L VLDVS N L SLP + L+EL N+L+ LP
Sbjct: 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 74 DTIGFELINLKTLSINCNKIVILPQSLTHLTSLRVLDARL---NCLKSLPE 121
+ L+ LS+ N + LP L L L LD L N L ++P+
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGL--LNGLENLDTLLLQENSLYTIPK 189
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 5/54 (9%)
Query: 141 LETLPYSIGLLMSLVELDVSYNKITTLPDSIGCLR---KLQKLSLEGNPLVSPP 191
L++LP L +L LDVS+N++T+LP +G LR +LQ+L L+GN L + P
Sbjct: 89 LQSLPLLGQTLPALTVLDVSFNRLTSLP--LGALRGLGELQELYLKGNELKTLP 140
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 31 GCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINC 90
G L L LD+S N L+SLP + +L L+ +FN+L LP L L+ L +
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 91 NKIVILPQS-LTHLTSLRVLDARLNCLKSLP 120
N++ LP LT L L N L LP
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELP 164
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 15 VLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLP-KTIENCRSLEELNANFNKLRQLP 73
LD+ NQL+ LP L L VLDVS N L SLP + L+EL N+L+ LP
Sbjct: 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 74 DTIGFELINLKTLSINCNKIVILPQSLTHLTSLRVLDARL---NCLKSLPE 121
+ L+ LS+ N + LP L L L LD L N L ++P+
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGL--LNGLENLDTLLLQENSLYTIPK 189
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 5/54 (9%)
Query: 141 LETLPYSIGLLMSLVELDVSYNKITTLPDSIGCLR---KLQKLSLEGNPLVSPP 191
L++LP L +L LDVS+N++T+LP +G LR +LQ+L L+GN L + P
Sbjct: 89 LQSLPLLGQTLPALTVLDVSFNRLTSLP--LGALRGLGELQELYLKGNELKTLP 140
Score = 34.3 bits (77), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%)
Query: 31 GCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINC 90
G L L LD+S N L+SLP + +L L+ +FN+L LP L L+ L +
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 91 NKIVILPQSL 100
N++ LP L
Sbjct: 134 NELKTLPPGL 143
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 15 VLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLP-KTIENCRSLEELNANFNKLRQLP 73
LD+ NQL+ LP L L VLDVS N L SLP + L+EL N+L+ LP
Sbjct: 82 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 141
Query: 74 DTIGFELINLKTLSINCNKIVILPQSLTHLTSLRVLDARL---NCLKSLPE 121
+ L+ LS+ N + LP L L L LD L N L ++P+
Sbjct: 142 PGLLTPTPKLEKLSLANNNLTELPAGL--LNGLENLDTLLLQENSLYTIPK 190
Score = 34.7 bits (78), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 5/54 (9%)
Query: 141 LETLPYSIGLLMSLVELDVSYNKITTLPDSIGCLR---KLQKLSLEGNPLVSPP 191
L++LP L +L LDVS+N++T+LP +G LR +LQ+L L+GN L + P
Sbjct: 90 LQSLPLLGQTLPALTVLDVSFNRLTSLP--LGALRGLGELQELYLKGNELKTLP 141
Score = 34.3 bits (77), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 31 GCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINC 90
G L L LD+S N L+SLP + +L L+ +FN+L LP L L+ L +
Sbjct: 75 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 134
Query: 91 NKIVILPQS-LTHLTSLRVLDARLNCLKSLP 120
N++ LP LT L L N L LP
Sbjct: 135 NELKTLPPGLLTPTPKLEKLSLANNNLTELP 165
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 2 IPESLTARLLNVVVLDVHSNQLKCLPNSI-GCLSKLKVLDVSGNLLESLPKTI-ENCRSL 59
+P + +L + L + NQ++ LP+ + L+KL +L + N L+SLP + + L
Sbjct: 43 LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQL 102
Query: 60 EELNANFNKLRQLPDTIGFELINLKTLSINCN 91
+EL + N+L+ +PD I L +L+ + ++ N
Sbjct: 103 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 57/95 (60%), Gaps = 3/95 (3%)
Query: 16 LDVHSNQLKCLPNSI-GCLSKLKVLDVSGNLLESLPKTI-ENCRSLEELNANFNKLRQLP 73
L++ SN+L+ LP+ + L++L L +S N ++SLP + + L L + NKL+ LP
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92
Query: 74 DTIGFELINLKTLSINCNKIVILPQSL-THLTSLR 107
+ + +L LK L+++ N++ +P + LTSL+
Sbjct: 93 NGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQ 127
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 62/143 (43%), Gaps = 28/143 (19%)
Query: 46 LESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINCNKIVILPQSL-THLT 104
L S+P I + + EL +N KL+ LP + +L L LS++ N+I LP + LT
Sbjct: 19 LTSVPTGIPSSATRLELESN--KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT 76
Query: 105 SLRVLDARLNCLKSLPEDXXXXXXXXXXXXSQNFQYLETLPYSIGLLMSLVELDVSYNKI 164
L +L N L+SLP L L EL + N++
Sbjct: 77 KLTILYLHENKLQSLPNGV------------------------FDKLTQLKELALDTNQL 112
Query: 165 TTLPDSI-GCLRKLQKLSLEGNP 186
++PD I L LQK+ L NP
Sbjct: 113 KSVPDGIFDRLTSLQKIWLHTNP 135
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 141 LETLPYSI-GLLMSLVELDVSYNKITTLPDSI-GCLRKLQKLSLEGNPLVSPPMDVVEQ 197
L++LP+ + L L +L +S N+I +LPD + L KL L L N L S P V ++
Sbjct: 40 LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDK 98
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 28 NSIGCLSKLKVLDVSGNLLESL-PKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTL 86
N+ L+ L L++S N L S+ + EN LE L+ ++N +R L D L NLK L
Sbjct: 317 NAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKEL 376
Query: 87 SINCNKIVILPQSL-THLTSLR 107
+++ N++ +P + LTSL+
Sbjct: 377 ALDTNQLKSVPDGIFDRLTSLQ 398
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 33 LSKLKVLDVSGNLLESL-PKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINCN 91
L KL+VLD+S N + +L ++ +L+EL + N+L+ +PD I L +L+ + ++ N
Sbjct: 346 LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 78/176 (44%), Gaps = 5/176 (2%)
Query: 15 VLDVHSNQLKCLPN-SIGCLSKLKVLDVSGNLLESLPKTIEN-CRSLEELN-ANFNKLRQ 71
L++ N L +P+ + LSKL+ L + N +ES+P N SL L+ KL
Sbjct: 127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY 186
Query: 72 LPDTIGFELINLKTLSINCNKIVILPQSLTHLTSLRVLDARLNCLKSLPEDXXXXXXXXX 131
+ + L NLK L++ I +P +LT L L L+ N +
Sbjct: 187 ISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLK 245
Query: 132 XXXSQNFQYLETLPYSIGLLMSLVELDVSYNKITTLP-DSIGCLRKLQKLSLEGNP 186
N Q + L SLVEL++++N +++LP D LR L +L L NP
Sbjct: 246 KLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 52 TIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINCNKIVILPQ-SLTHLTSLRVLD 110
T + LE L N +RQ+ L +L TL + N + ++P + +L+ LR L
Sbjct: 94 TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153
Query: 111 ARLNCLKSLP 120
R N ++S+P
Sbjct: 154 LRNNPIESIP 163
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 85/192 (44%), Gaps = 10/192 (5%)
Query: 2 IPESLTARLLNVVVLDVHSNQLK--CLPN-SIGCLSKLKVLDVSGN-LLESLPKTIENCR 57
+PESLT +++ LD+ SN LPN + L+ L + N +P T+ NC
Sbjct: 356 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 415
Query: 58 SLEELNANFNKLR-QLPDTIGFELINLKTLSINCNKIVI-LPQSLTHLTSLRVLDARLNC 115
L L+ +FN L +P ++G L L+ L + N + +PQ L ++ +L L N
Sbjct: 416 ELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 474
Query: 116 LKS-LPEDXXXXXXXXXXXXSQNFQYLETLPYSIGLLMSLVELDVSYNKIT-TLPDSIGC 173
L +P S N + +P IG L +L L +S N + +P +G
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNN-RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 533
Query: 174 LRKLQKLSLEGN 185
R L L L N
Sbjct: 534 CRSLIWLDLNTN 545
Score = 34.3 bits (77), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 74/159 (46%), Gaps = 7/159 (4%)
Query: 31 GCLSKLKVLDVSGN-LLESLPKTIENCRSLEELNANFNKLR-QLPDTIGFELINLKTLSI 88
G L LD+SGN ++P +C LE L + N +LP ++ LK L +
Sbjct: 288 GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 347
Query: 89 NCNKIVI-LPQSLTHLT-SLRVLDARLNCLKS--LPEDXXXXXXXXXXXXSQNFQYLETL 144
+ N+ LP+SLT+L+ SL LD N LP QN + +
Sbjct: 348 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 407
Query: 145 PYSIGLLMSLVELDVSYNKIT-TLPDSIGCLRKLQKLSL 182
P ++ LV L +S+N ++ T+P S+G L KL+ L L
Sbjct: 408 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 446
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 8 ARLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLES-LPKTIENCRSLEELNANF 66
+R +N+ LDV SN +G S L+ LD+SGN L + I C L+ LN +
Sbjct: 194 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 253
Query: 67 NKL 69
N+
Sbjct: 254 NQF 256
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 85/192 (44%), Gaps = 10/192 (5%)
Query: 2 IPESLTARLLNVVVLDVHSNQLK--CLPN-SIGCLSKLKVLDVSGN-LLESLPKTIENCR 57
+PESLT +++ LD+ SN LPN + L+ L + N +P T+ NC
Sbjct: 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418
Query: 58 SLEELNANFNKLR-QLPDTIGFELINLKTLSINCNKIVI-LPQSLTHLTSLRVLDARLNC 115
L L+ +FN L +P ++G L L+ L + N + +PQ L ++ +L L N
Sbjct: 419 ELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477
Query: 116 LKS-LPEDXXXXXXXXXXXXSQNFQYLETLPYSIGLLMSLVELDVSYNKIT-TLPDSIGC 173
L +P S N + +P IG L +L L +S N + +P +G
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNN-RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536
Query: 174 LRKLQKLSLEGN 185
R L L L N
Sbjct: 537 CRSLIWLDLNTN 548
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 74/159 (46%), Gaps = 7/159 (4%)
Query: 31 GCLSKLKVLDVSGN-LLESLPKTIENCRSLEELNANFNKLR-QLPDTIGFELINLKTLSI 88
G L LD+SGN ++P +C LE L + N +LP ++ LK L +
Sbjct: 291 GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350
Query: 89 NCNKIVI-LPQSLTHLT-SLRVLDARLNCLKS--LPEDXXXXXXXXXXXXSQNFQYLETL 144
+ N+ LP+SLT+L+ SL LD N LP QN + +
Sbjct: 351 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 410
Query: 145 PYSIGLLMSLVELDVSYNKIT-TLPDSIGCLRKLQKLSL 182
P ++ LV L +S+N ++ T+P S+G L KL+ L L
Sbjct: 411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 8 ARLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLES-LPKTIENCRSLEELNANF 66
+R +N+ LDV SN +G S L+ LD+SGN L + I C L+ LN +
Sbjct: 197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256
Query: 67 NKL 69
N+
Sbjct: 257 NQF 259
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 87/183 (47%), Gaps = 9/183 (4%)
Query: 10 LLNVVVLDVHSNQLKCLPN-SIGCLSKLKVLDVSGNLLESLPKTIEN-CRSLEELN-ANF 66
L N+ L++ N+L +PN + LSKLK L + N +ES+P N SL L+
Sbjct: 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL 170
Query: 67 NKLRQLPDTIGFELINLKTLSINCNKIVILPQSLTHLTSLRVLDARLNCLKSL-PEDXXX 125
+L + + L NL+ L++ + +P +LT L L LD N L ++ P
Sbjct: 171 KRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQG 229
Query: 126 XXXXXXXXXSQN-FQYLETLPYSIGLLMSLVELDVSYNKITTLP-DSIGCLRKLQKLSLE 183
Q+ Q +E + L SLVE+++++N +T LP D L L+++ L
Sbjct: 230 LMHLQKLWMIQSQIQVIERNAFDN--LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLH 287
Query: 184 GNP 186
NP
Sbjct: 288 HNP 290
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 6/102 (5%)
Query: 15 VLDVHSNQLKCL-PNSIGCLSKLKVLDVSGNLLESL-PKTIENCRSLEELNANFNKLRQL 72
+LD+ N++K L + L+ L+++ N++ ++ P N +L L N+L+ +
Sbjct: 36 LLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI 95
Query: 73 PDTIGFELINLKTLSINCNKIVILP----QSLTHLTSLRVLD 110
P + L NL L I+ NKIVIL Q L +L SL V D
Sbjct: 96 PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD 137
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 2/110 (1%)
Query: 81 INLKTLSI-NCNKIVILPQSLTHLTSLRVLDARLNCLKSLPEDXXXXXXXXXXXXSQNFQ 139
+NL +LSI +CN + ++ HL LR L+ N + ++ Q
Sbjct: 224 LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ 283
Query: 140 YLETLPYSIGLLMSLVELDVSYNKITTLPDSI-GCLRKLQKLSLEGNPLV 188
PY+ L L L+VS N++TTL +S+ + L+ L L+ NPL
Sbjct: 284 LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 79/188 (42%), Gaps = 27/188 (14%)
Query: 27 PNSIGCLSKLKVLDVSGNLLESLP-KTIENCRSLEELNANFNKLRQLPDTIGFELINLKT 85
P + L L+ L + N L+ +P +L +L+ + NK+ L D + +L NLK+
Sbjct: 73 PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKS 132
Query: 86 LSIN-------------------------CNKIVILPQSLTHLTSLRVLDARLNCLKSLP 120
L + CN I ++L+HL L VL R + ++
Sbjct: 133 LEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR 192
Query: 121 EDXXXXXXXXXXXXSQNFQYLETLPYSIGLLMSLVELDVSYNKITTLPD-SIGCLRKLQK 179
+ ++ YL+T+ + ++L L +++ +T +P ++ L L+
Sbjct: 193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRF 252
Query: 180 LSLEGNPL 187
L+L NP+
Sbjct: 253 LNLSYNPI 260
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 34.7 bits (78), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 30 IGCLSKLKVLDVSGNLLESL-PKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSI 88
G L L L++ N L + P E ++EL NK++++ + + L LKTL++
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 89 NCNKI-VILPQSLTHLTSLRVLD 110
N+I ++P S HL SL L+
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLN 132
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 85/195 (43%), Gaps = 11/195 (5%)
Query: 16 LDVHSNQLK---CLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQL 72
LD+ N L C S + LK LD+S N + ++ LE L+ + L+Q+
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM 411
Query: 73 PD-TIGFELINLKTLSI-NCNKIVILPQSLTHLTSLRVLDARLNCLKS--LPEDXXXXXX 128
+ ++ L NL L I + + V L+SL VL N + LP+
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471
Query: 129 XXXXXXSQNFQYLETLPYSIGLLMSLVELDVSYNKITTLPDSI-GCLRKLQKLSLEGNPL 187
SQ Q + P + L SL L+++ N++ ++PD I L LQK+ L NP
Sbjct: 472 LTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530
Query: 188 --VSPPMDVVEQGLS 200
P +D + + L+
Sbjct: 531 DCSCPRIDYLSRWLN 545
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 11 LNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESL-PKTIENCRSLEELNANFNKL 69
L V+ + +S Q LP+ L L LD+S LE L P + SL+ LN N+L
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
Query: 70 RQLPDTIGFELINLKTLSINCN 91
+ +PD I L +L+ + ++ N
Sbjct: 507 KSVPDGIFDRLTSLQKIWLHTN 528
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 8 ARLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLES--LPKTIENCRSLEELNAN 65
+ L +V ++ + L+ P IG L LK L+V+ NL++S LP+ N +LE L+ +
Sbjct: 100 SSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157
Query: 66 FNKLRQL 72
NK++ +
Sbjct: 158 SNKIQSI 164
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 9 RLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNK 68
+LL V LD+ N+L+ LP ++ L L+VL S N LE++ + N L+EL N+
Sbjct: 461 QLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV-DGVANLPRLQELLLCNNR 519
Query: 69 LRQ 71
L+Q
Sbjct: 520 LQQ 522
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 151 LMSLVELDVSYNKITTLPDSIGCLRKLQKLSLEGNPL 187
L+ + LD+S+N++ LP ++ LR L+ L N L
Sbjct: 462 LLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL 498
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 12 NVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLP-KTIENCRSLEELNANFNKLR 70
+V L + NQ +P + L ++D+S N + +L ++ N L L ++N+LR
Sbjct: 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 71 QLPDTIGFELINLKTLSINCNKIVILPQ-------SLTHLT 104
+P L +L+ LS++ N I ++P+ +L+HL
Sbjct: 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA 132
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 14 VVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLP 73
V+ + LK LP I + L + GN +PK + N + L ++ + N++ L
Sbjct: 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLS 70
Query: 74 DTIGFELINLKTLSINCNKI-VILPQSLTHLTSLRVLDARLNCLKSLPE 121
+ + L TL ++ N++ I P++ L SLR+L N + +PE
Sbjct: 71 NQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPE 119
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 9 RLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNK 68
+LL V LD+ N+L+ LP ++ L L+VL S N LE++ + N L+EL N+
Sbjct: 461 QLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV-DGVANLPRLQELLLCNNR 519
Query: 69 LRQ 71
L+Q
Sbjct: 520 LQQ 522
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 151 LMSLVELDVSYNKITTLPDSIGCLRKLQKLSLEGNPL 187
L+ + LD+S+N++ LP ++ LR L+ L N L
Sbjct: 462 LLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL 498
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 8/176 (4%)
Query: 34 SKLKVLDVSGNLLESLPK-TIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINCNK 92
S K +D+S N L+ L + N L+ L+ + ++ + D L +L L + N
Sbjct: 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91
Query: 93 IVIL-PQSLTHLTSLR---VLDARLNCLKSLPEDXXXXXXXXXXXXSQNFQYLETLPYSI 148
I P S + LTSL ++ +L L+S P + NF + LP
Sbjct: 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFP--IGQLITLKKLNVAHNFIHSCKLPAYF 149
Query: 149 GLLMSLVELDVSYNKITTLP-DSIGCLRKLQKLSLEGNPLVSPPMDVVEQGLSAVK 203
L +LV +D+SYN I T+ + + LR+ +++L + ++P + +Q +K
Sbjct: 150 SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK 205
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 75/173 (43%), Gaps = 23/173 (13%)
Query: 33 LSKLKVLDVSGNLLESL-PKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINCN 91
L L L ++GN ++S P + SLE L A KL L +LI LK L++ N
Sbjct: 79 LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 138
Query: 92 KI--VILPQSLTHLTSLRVLDARLNCLKSLPEDXXXXXXXXXXXXSQNFQYLETLPYSIG 149
I LP ++LT+L +D N ++++ + + Q+L P +
Sbjct: 139 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN--------------DLQFLRENP-QVN 183
Query: 150 LLMSLVELDVSYNKITTLPDSIGCLRKLQKLSLEGNPLVSPPMDVVEQGLSAV 202
L LD+S N I + D KL +L+L GN S M Q L+ +
Sbjct: 184 L-----SLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGL 231
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 8/176 (4%)
Query: 34 SKLKVLDVSGNLLESLPK-TIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINCNK 92
S K +D+S N L+ L + N L+ L+ + ++ + D L +L L + N
Sbjct: 27 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 86
Query: 93 IVIL-PQSLTHLTSLR---VLDARLNCLKSLPEDXXXXXXXXXXXXSQNFQYLETLPYSI 148
I P S + LTSL ++ +L L+S P + NF + LP
Sbjct: 87 IQSFSPGSFSGLTSLENLVAVETKLASLESFP--IGQLITLKKLNVAHNFIHSCKLPAYF 144
Query: 149 GLLMSLVELDVSYNKITTLP-DSIGCLRKLQKLSLEGNPLVSPPMDVVEQGLSAVK 203
L +LV +D+SYN I T+ + + LR+ +++L + ++P + +Q +K
Sbjct: 145 SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK 200
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 75/173 (43%), Gaps = 23/173 (13%)
Query: 33 LSKLKVLDVSGNLLESL-PKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINCN 91
L L L ++GN ++S P + SLE L A KL L +LI LK L++ N
Sbjct: 74 LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 133
Query: 92 KI--VILPQSLTHLTSLRVLDARLNCLKSLPEDXXXXXXXXXXXXSQNFQYLETLPYSIG 149
I LP ++LT+L +D N ++++ + + Q+L P +
Sbjct: 134 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN--------------DLQFLRENP-QVN 178
Query: 150 LLMSLVELDVSYNKITTLPDSIGCLRKLQKLSLEGNPLVSPPMDVVEQGLSAV 202
L LD+S N I + D KL +L+L GN S M Q L+ +
Sbjct: 179 L-----SLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGL 226
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 28 NSIGCLSKLK----VLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINL 83
+S GC S+ +++ L S+P I + + L N N++ +L + L+NL
Sbjct: 2 HSAGCPSQCSCDQTLVNCQNIRLASVPAGIPTDK--QRLWLNNNQITKLEPGVFDHLVNL 59
Query: 84 KTLSINCNKIVILPQSL-THLTSLRVLDARLNCLKSLP 120
+ L N NK+ +P + LT L LD N LKS+P
Sbjct: 60 QQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 74/167 (44%), Gaps = 41/167 (24%)
Query: 16 LDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDT 75
L V +NQL+ LP + S LK++DV N L+ LP SLE + A N+L +LP
Sbjct: 136 LGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEELP-- 189
Query: 76 IGFELINLKTLSI------NCNKIVILPQSLTHLTSLRVLDARLNCLKSLPEDXXXXXXX 129
EL NL L+ + K+ LP SL + A N L+ LPE
Sbjct: 190 ---ELQNLPFLTAIYADNNSLKKLPDLPLSLESIV------AGNNILEELPE-------- 232
Query: 130 XXXXXSQNFQYLETLPYSIGLLMSLVE-------LDVSYNKITTLPD 169
QN +L T+ LL +L + L+V N +T LP+
Sbjct: 233 -----LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPE 274
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 16/112 (14%)
Query: 16 LDVHSNQLKCLPNSIGCLS------KLKVLDVSGNLLESLPKTIENCRSLEELNANFNKL 69
LD +++L+ N++G S L+ L S N L LP+ ++ +SL N N L
Sbjct: 69 LDRQAHELEL--NNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKAL 126
Query: 70 RQLPDTIGFELINLKTLSINCNKIVILPQSLTHLTSLRVLDARLNCLKSLPE 121
LP + + L ++ N++ LP+ L + + L+++D N LK LP+
Sbjct: 127 SDLPPLLEY-------LGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPD 170
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 5/176 (2%)
Query: 15 VLDVHSNQLKCLP-NSIGCLSKLKVLDVSGNLLESLPKTIEN-CRSLEELNANFNKLRQL 72
L++ N+L +P + LSKL+ L + N +ES+P N SL L+ K +
Sbjct: 87 TLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEY 146
Query: 73 PDTIGFE-LINLKTLSINCNKIVILPQSLTHLTSLRVLDARLNCLKSLPEDXXXXXXXXX 131
FE L+NL+ L++ + +P +LT L L L+ N L +
Sbjct: 147 ISEAAFEGLVNLRYLNLGMCNLKDIP-NLTALVRLEELELSGNRLDLIRPGSFQGLTSLR 205
Query: 132 XXXSQNFQYLETLPYSIGLLMSLVELDVSYNKITTLP-DSIGCLRKLQKLSLEGNP 186
+ Q + L SL EL++S+N + +LP D L +L+++ L NP
Sbjct: 206 KLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNP 261
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 26/115 (22%)
Query: 2 IPESLTARLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGN----------------- 44
I E+ L+N+ L++ LK +PN + L +L+ L++SGN
Sbjct: 147 ISEAAFEGLVNLRYLNLGMCNLKDIPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLR 205
Query: 45 ---LLESLPKTIE-----NCRSLEELNANFNKLRQLPDTIGFELINLKTLSINCN 91
L+ + TIE + +SLEELN + N L LP + L L+ + +N N
Sbjct: 206 KLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 30/160 (18%)
Query: 34 SKLKVLDVSGNLLESL-PKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINCNK 92
S ++ LD+S + SL + E + L+ LN +NK+ ++ D + L NL+ L+++ N
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325
Query: 93 IVILPQS-LTHLTSLRVLDARLNCLKSLPEDXXXXXXXXXXXXSQNFQYLETLPYSIGLL 151
+ L S L + +D + N + + + Q F++LE L
Sbjct: 326 LGELYSSNFYGLPKVAYIDLQKNHIAIIQD--------------QTFKFLEKLQ------ 365
Query: 152 MSLVELDVSYNKITTLPDSIGCLRKLQKLSLEGNPLVSPP 191
LD+ N +TT I + + + L GN LV+ P
Sbjct: 366 ----TLDLRDNALTT----IHFIPSIPDIFLSGNKLVTLP 397
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 90/217 (41%), Gaps = 47/217 (21%)
Query: 1 MIPESLTARLLNVVVLDVHSNQL--KCLPNSI--GCLSKLKVLDVSGNLLESLPKTIE-- 54
++P S + L ++ LD+ N + + L NS G L+ L +S N L S+ KT E
Sbjct: 350 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL 409
Query: 55 -NCRSLEELNANFNKLRQLPDTIGF----ELINLKTLSINCNKIVILPQSLTHLTSLRVL 109
++L L+ + N +PD+ + +NL + I K I PQ+L VL
Sbjct: 410 LTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI-PQTL------EVL 462
Query: 110 DARLNCLKSLPEDXXXXXXXXXXXXSQNFQYLETLPYSIGLLMSLVELDVSYNKITTLPD 169
D N L S +S+ L L EL +S NK+ TLPD
Sbjct: 463 DVSNNNLDS---------------------------FSL-FLPRLQELYISRNKLKTLPD 494
Query: 170 SIGCLRKLQKLSLEGNPLVSPPMDVVEQGLSAVKGYL 206
+ L + + N L S P + ++ S K +L
Sbjct: 495 A-SLFPVLLVMKIASNQLKSVPDGIFDRLTSLQKIWL 530
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 11/114 (9%)
Query: 10 LLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENC--RSLEELNANFN 67
L N+ LD+ N +P+S K++ L++S + + ++ C ++LE L+ + N
Sbjct: 386 LKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGI----RVVKTCIPQTLEVLDVSNN 441
Query: 68 KLRQLPDTIGFELINLKTLSINCNKIVILPQSLTHLTSLRVLDARLNCLKSLPE 121
L D+ L L+ L I+ NK+ LP + + L V+ N LKS+P+
Sbjct: 442 NL----DSFSLFLPRLQELYISRNKLKTLPDA-SLFPVLLVMKISRNQLKSVPD 490
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 90/217 (41%), Gaps = 47/217 (21%)
Query: 1 MIPESLTARLLNVVVLDVHSNQL--KCLPNSI--GCLSKLKVLDVSGNLLESLPKTIE-- 54
++P S + L ++ LD+ N + + L NS G L+ L +S N L S+ KT E
Sbjct: 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL 383
Query: 55 -NCRSLEELNANFNKLRQLPDTIGF----ELINLKTLSINCNKIVILPQSLTHLTSLRVL 109
++L L+ + N +PD+ + +NL + I K I PQ+L VL
Sbjct: 384 LTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI-PQTL------EVL 436
Query: 110 DARLNCLKSLPEDXXXXXXXXXXXXSQNFQYLETLPYSIGLLMSLVELDVSYNKITTLPD 169
D N L S +S+ L L EL +S NK+ TLPD
Sbjct: 437 DVSNNNLDS---------------------------FSL-FLPRLQELYISRNKLKTLPD 468
Query: 170 SIGCLRKLQKLSLEGNPLVSPPMDVVEQGLSAVKGYL 206
+ L + + N L S P + ++ S K +L
Sbjct: 469 A-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWL 504
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 33 LSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINCNK 92
+ L L++ N+ E ++ +LE + NKLRQ+P I ++ LK L++ N+
Sbjct: 146 MRNLSHLELRANIEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQ 205
Query: 93 IVILPQSL-THLTSLR 107
+ +P + LTSL+
Sbjct: 206 LKSVPDGIFDRLTSLQ 221
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 2 IPESLTARLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTI-ENCRSLE 60
IP +L + N+ L++ +N + + L L+ ++ N L +P+ I L+
Sbjct: 138 IPANLLTDMRNLSHLELRANIEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLK 197
Query: 61 ELNANFNKLRQLPDTIGFELINLKTLSINCN 91
+LN N+L+ +PD I L +L+ + ++ N
Sbjct: 198 QLNLASNQLKSVPDGIFDRLTSLQKIWLHTN 228
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 32/130 (24%)
Query: 8 ARLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLES--LPKTIENCRSLEELNAN 65
+ L +V L+ + L+ P IG L LK L+V+ NL++S LP+ N +LE L+ +
Sbjct: 102 SSLQKLVALETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 159
Query: 66 FNK-----------LRQLPDTI----------------GFELINLKTLSINCNKIVILPQ 98
NK L Q+P F+ I LK L+++ N++ +P
Sbjct: 160 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPD 219
Query: 99 SL-THLTSLR 107
+ LTSL+
Sbjct: 220 GIFDRLTSLQ 229
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 5/176 (2%)
Query: 15 VLDVHSNQLKCLPN-SIGCLSKLKVLDVSGNLLESLPKTIEN-CRSLEELNANFNKLRQL 72
L++ N+L +P + LSKL+ L + N +ES+P N SL L+ K +
Sbjct: 87 TLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEY 146
Query: 73 PDTIGFE-LINLKTLSINCNKIVILPQSLTHLTSLRVLDARLNCLKSLPEDXXXXXXXXX 131
FE L+NL+ L++ + +P +LT L L L+ N L +
Sbjct: 147 ISEAAFEGLVNLRYLNLGMCNLKDIP-NLTALVRLEELELSGNRLDLIRPGSFQGLTSLR 205
Query: 132 XXXSQNFQYLETLPYSIGLLMSLVELDVSYNKITTLP-DSIGCLRKLQKLSLEGNP 186
+ Q + L SL EL++S+N + +LP D L +L+++ L NP
Sbjct: 206 KLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNP 261
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 26/115 (22%)
Query: 2 IPESLTARLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGN----------------- 44
I E+ L+N+ L++ LK +PN + L +L+ L++SGN
Sbjct: 147 ISEAAFEGLVNLRYLNLGMCNLKDIPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLR 205
Query: 45 ---LLESLPKTIE-----NCRSLEELNANFNKLRQLPDTIGFELINLKTLSINCN 91
L+ + TIE + +SLEELN + N L LP + L L+ + +N N
Sbjct: 206 KLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 32 CLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSI--N 89
C ++++ LD++ L LP IE SL++L N N QL +L+ L I N
Sbjct: 275 CFTRVQELDLTAAHLNGLPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGN 334
Query: 90 CNKIVILPQSLTHLTSLRVLD 110
K+ + + L L +L+ LD
Sbjct: 335 MRKLDLGTRCLEKLENLQKLD 355
>pdb|4F67|A Chain A, Three Dimensional Structure Of The Double Mutant Of
Upf0176 Protein Lpg2838 From Legionella Pneumophila At
The Resolution 1.8a, Northeast Structural Genomics
Consortium (Nesg) Target Lgr82
Length = 265
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 62 LNANFNKLRQLPDTIGFELINLK--------TLSINCNKIVILPQSLTHLTSLRVLDARL 113
+N + R+ PD + LI+ K T I C K + L ++ D L
Sbjct: 158 INPDIENFREFPDYVQRNLIDKKDKKIAXFCTGGIRCEKTTAYXKELGFEHVYQLHDGIL 217
Query: 114 NCLKSLPE 121
N L+S+PE
Sbjct: 218 NYLESIPE 225
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 32/130 (24%)
Query: 8 ARLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLES--LPKTIENCRSLEELNAN 65
+ L +V ++ + L+ P IG L LK L+V+ NL++S LP+ N +LE L+ +
Sbjct: 102 SSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 159
Query: 66 FNK-----------LRQLPDTI----------------GFELINLKTLSINCNKIVILPQ 98
NK L Q+P F+ I LK L+++ N++ +P
Sbjct: 160 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPD 219
Query: 99 SL-THLTSLR 107
+ LTSL+
Sbjct: 220 GIFDRLTSLQ 229
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 30.4 bits (67), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 32/130 (24%)
Query: 8 ARLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLES--LPKTIENCRSLEELNAN 65
+ L +V ++ + L+ P IG L LK L+V+ NL++S LP+ N +LE L+ +
Sbjct: 101 SSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 158
Query: 66 FNK-----------LRQLPDTI----------------GFELINLKTLSINCNKIVILPQ 98
NK L Q+P F+ I LK L+++ N++ +P
Sbjct: 159 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPD 218
Query: 99 SL-THLTSLR 107
+ LTSL+
Sbjct: 219 GIFDRLTSLQ 228
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 32/130 (24%)
Query: 8 ARLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLES--LPKTIENCRSLEELNAN 65
+ L +V ++ + L+ P IG L LK L+V+ NL++S LP+ N +LE L+ +
Sbjct: 100 SSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157
Query: 66 FNK-----------LRQLPDTI----------------GFELINLKTLSINCNKIVILPQ 98
NK L Q+P F+ I LK L+++ N++ +P
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPD 217
Query: 99 SL-THLTSLR 107
+ LTSL+
Sbjct: 218 GIFDRLTSLQ 227
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 32/130 (24%)
Query: 8 ARLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLES--LPKTIENCRSLEELNAN 65
+ L +V ++ + L+ P IG L LK L+V+ NL++S LP+ N +LE L+ +
Sbjct: 101 SSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 158
Query: 66 FNK-----------LRQLPDTI----------------GFELINLKTLSINCNKIVILPQ 98
NK L Q+P F+ I LK L+++ N++ +P
Sbjct: 159 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPD 218
Query: 99 SL-THLTSLR 107
+ LTSL+
Sbjct: 219 GIFDRLTSLQ 228
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 185 NPLVSPPMDVVEQGLSAVKGYLS 207
NPL SPP ++V+QG AV+ Y
Sbjct: 2 NPLESPPPEIVKQGKEAVRQYFQ 24
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 143 TLPYSIGLLMSLVELDVSYNKIT-TLPDSIGCLRKLQKLSLEGN 185
+P + + +LV LD SYN ++ TLP SI L L ++ +GN
Sbjct: 116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 8 ARLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLES--LPKTIENCRSLEELNAN 65
+ L +V ++ + L+ P IG L LK L+V+ NL++S LP+ N +LE L+ +
Sbjct: 124 SSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 181
Query: 66 FNKLRQL 72
NK++ +
Sbjct: 182 SNKIQSI 188
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 11 LNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESL-PKTIENCRSLEELNANFNKL 69
L V+ + +S Q LP+ L L LD+S LE L P + SL+ LN + N
Sbjct: 471 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
Query: 70 RQLPDTIGFELIN-LKTLSINCNKIVIL-PQSLTHLTS 105
L DT ++ +N L+ L + N I+ Q L H S
Sbjct: 531 FSL-DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 567
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 8 ARLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLES--LPKTIENCRSLEELNAN 65
+ L +V ++ + L+ P IG L LK L+V+ NL++S LP+ N +LE L+ +
Sbjct: 100 SSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157
Query: 66 FNKLRQL 72
NK++ +
Sbjct: 158 SNKIQSI 164
>pdb|1QQ5|A Chain A, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus
pdb|1QQ5|B Chain B, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus
Length = 253
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 142 ETLPYSIGLL------MSLVELDVSYNKITTLPDSIGCLRKLQKL 180
E L Y++G L L ++ +YN++T PD+ CL +L L
Sbjct: 64 EALAYTLGTLGLEPDESFLADMAQAYNRLTPYPDAAQCLAELAPL 108
>pdb|1AQ6|A Chain A, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus
pdb|1AQ6|B Chain B, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus
Length = 253
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 142 ETLPYSIGLL------MSLVELDVSYNKITTLPDSIGCLRKLQKL 180
E L Y++G L L ++ +YN++T PD+ CL +L L
Sbjct: 64 EALAYTLGTLGLEPDESFLADMAQAYNRLTPYPDAAQCLAELAPL 108
>pdb|1QQ7|A Chain A, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus With Chloropropionic Acid Covalently Bound
pdb|1QQ7|B Chain B, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus With Chloropropionic Acid Covalently Bound
pdb|1QQ6|A Chain A, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus With Chloroacetic Acid Covalently Bound
pdb|1QQ6|B Chain B, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus With Chloroacetic Acid Covalently Bound
Length = 253
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 142 ETLPYSIGLL------MSLVELDVSYNKITTLPDSIGCLRKLQKL 180
E L Y++G L L ++ +YN++T PD+ CL +L L
Sbjct: 64 EALAYTLGTLGLEPDESFLADMAQAYNRLTPYPDAAQCLAELAPL 108
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 9 RLLNVVVLDVHSNQLKCLPNSI-GCLSKLKVLDVSGNLLESLPK-TIENCRSLEEL 62
RL + LD+ +NQL LP + L++L L ++ N L+S+P+ +N RSL +
Sbjct: 52 RLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHI 107
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 28 NSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLS 87
N+ C S L+ LD++ L LP + +L++L + NK L +L LS
Sbjct: 272 NTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331
Query: 88 I--NCNKIVILPQSLTHLTSLRVLD 110
I N ++ + L +L +LR LD
Sbjct: 332 IKGNTKRLELGTGCLENLENLRELD 356
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 68/160 (42%), Gaps = 32/160 (20%)
Query: 33 LSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINCNK 92
+ LK L +S N + L +++ LEEL+ N N+L+ L G L L ++ N+
Sbjct: 62 FTNLKELHLSHNQISDL-SPLKDLTKLEELSVNRNRLKNLN---GIPSACLSRLFLDNNE 117
Query: 93 IVILPQSLTHLTSLRVLDARLNCLKSLPEDXXXXXXXXXXXXSQNFQYLETLPYSIGLLM 152
+ SL HL +L +L R N LKS+ +G L
Sbjct: 118 LRD-TDSLIHLKNLEILSIRNNKLKSI--------------------------VMLGFLS 150
Query: 153 SLVELDVSYNKITTLPDSIGCLRKLQKLSLEGNPLVSPPM 192
L LD+ N+IT + L+K+ + L G V+ P+
Sbjct: 151 KLEVLDLHGNEITN-TGGLTRLKKVNWIDLTGQKCVNEPV 189
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 9 RLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGN 44
L N+ +L + +N+LK + +G LSKL+VLD+ GN
Sbjct: 126 HLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGN 160
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 70/177 (39%), Gaps = 27/177 (15%)
Query: 16 LDVHSN-QLKCL-PNSIGCLSKLKVLDVSGNLLESL-PKTIENCRSLEELNANFNKLRQL 72
LD+ N QL+ + P + L L L + L+ L P +L+ L N L+ L
Sbjct: 84 LDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQAL 143
Query: 73 PDTIGFELINLKTLSINCNKIVILPQSLTHLTSLRVLDARLNCLKSLPEDXXXXXXXXXX 132
PD +L NL L ++ N+I +P+ L LD L
Sbjct: 144 PDNTFRDLGNLTHLFLHGNRIPSVPEHA--FRGLHSLDRLL------------------- 182
Query: 133 XXSQNFQYLETLPYSIGLLMSLVELDVSYNKITTLPDSIGC-LRKLQKLSLEGNPLV 188
QN P++ L L+ L + N ++ LP + LR LQ L L NP V
Sbjct: 183 -LHQN-HVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDNPWV 237
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 29 SIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFE-LINLKTLS 87
S+ + L++L + NL++ + +LEEL ++N++ L G E L+NL+ L
Sbjct: 66 SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS---GIEKLVNLRVLY 122
Query: 88 INCNKI 93
++ NKI
Sbjct: 123 MSNNKI 128
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 29 SIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFE-LINLKTLS 87
S+ + L++L + NL++ + +LEEL ++N++ L G E L+NL+ L
Sbjct: 65 SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS---GIEKLVNLRVLY 121
Query: 88 INCNKI 93
++ NKI
Sbjct: 122 MSNNKI 127
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 13/118 (11%)
Query: 2 IPESLTARLLNVVVLDVHSNQLKCLP-NSIGCLSKLKVLDVSGNLLESL-PKTIENCRSL 59
+PE++T + + N +K +P + KL+ +D+S N + L P + RSL
Sbjct: 30 LPETITE-------IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82
Query: 60 EELNANFNKLRQLPDTIGFELINLKTLSINCNKIVILP----QSLTHLTSLRVLDARL 113
L NK+ +LP ++ L +L+ L +N NKI L Q L +L L + D +L
Sbjct: 83 NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKL 140
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 145 PYSIGLLMSLVELDVSYNKITTL-PDSIGCLRKLQKLSLEGNPLVSPPMDVVE 196
P + L +D+S N+I+ L PD+ LR L L L GN + P + E
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFE 101
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 13/118 (11%)
Query: 2 IPESLTARLLNVVVLDVHSNQLKCLP-NSIGCLSKLKVLDVSGNLLESL-PKTIENCRSL 59
+PE++T + + N +K +P + KL+ +D+S N + L P + RSL
Sbjct: 30 LPETITE-------IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82
Query: 60 EELNANFNKLRQLPDTIGFELINLKTLSINCNKIVILP----QSLTHLTSLRVLDARL 113
L NK+ +LP ++ L +L+ L +N NKI L Q L +L L + D +L
Sbjct: 83 NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL 140
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 145 PYSIGLLMSLVELDVSYNKITTL-PDSIGCLRKLQKLSLEGNPLVSPPMDVVE 196
P + L +D+S N+I+ L PD+ LR L L L GN + P + E
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFE 101
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 138 FQYLETLPYSIGLLMSLVELDVSYNKITTLPDSI-GCLRKLQKLSLEGNPL--VSPPMDV 194
FQ ++ L GLL EL+ S N++ ++PD I L LQK+ L NP P +D
Sbjct: 267 FQVMKLLNQISGLL----ELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 322
Query: 195 VEQGL 199
+ + L
Sbjct: 323 LSRWL 327
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 83/197 (42%), Gaps = 11/197 (5%)
Query: 2 IPESLTARLLNVVVLDVHSNQLK---CLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRS 58
+P + +L + L + SN L C S + LK LD+S N + ++
Sbjct: 43 LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 102
Query: 59 LEELNANFNKLRQLPD-TIGFELINLKTLSI-NCNKIVILPQSLTHLTSLRVLDARLNCL 116
LE L+ + L+Q+ + ++ L NL L I + + V L+SL VL N
Sbjct: 103 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162
Query: 117 KS--LPEDXXXXXXXXXXXXSQNFQYLETLPYSIGLLMSLVELDVSYNKITTLPDSI--G 172
+ LP+ SQ Q + P + L SL L++S+N +L D+
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQ-CQLEQLSPTAFNSLSSLQVLNMSHNNFFSL-DTFPYK 220
Query: 173 CLRKLQKLSLEGNPLVS 189
CL LQ L N +++
Sbjct: 221 CLNSLQVLDYSLNHIMT 237
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 9 RLLNVVVLDVHSNQLKCLPNSI-GCLSKLKVLDVSGNLLESLPK-TIENCRSLEEL 62
RL + LD+ +NQL LP + L++L L ++ N L+S+P+ +N +SL +
Sbjct: 60 RLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHI 115
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 9 RLLNVVVLDVHSNQLKCLPNSI-GCLSKLKVLDVSGNLLESLPK-TIENCRSLEEL 62
RL + LD+ +NQL LP + L++L L ++ N L+S+P+ +N +SL +
Sbjct: 52 RLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHI 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,524,414
Number of Sequences: 62578
Number of extensions: 278046
Number of successful extensions: 887
Number of sequences better than 100.0: 95
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 579
Number of HSP's gapped (non-prelim): 247
length of query: 281
length of database: 14,973,337
effective HSP length: 98
effective length of query: 183
effective length of database: 8,840,693
effective search space: 1617846819
effective search space used: 1617846819
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)