Query 023495
Match_columns 281
No_of_seqs 237 out of 3279
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 04:28:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023495.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023495hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 8.6E-22 1.9E-26 192.0 13.9 187 3-193 110-302 (968)
2 KOG4194 Membrane glycoprotein 99.9 5.1E-23 1.1E-27 179.0 3.9 248 11-260 173-428 (873)
3 KOG4194 Membrane glycoprotein 99.9 1.5E-22 3.2E-27 176.2 4.9 231 6-238 144-379 (873)
4 PLN00113 leucine-rich repeat r 99.9 2E-21 4.4E-26 189.5 13.2 180 8-189 161-346 (968)
5 KOG0444 Cytoskeletal regulator 99.8 4.3E-22 9.4E-27 174.8 3.7 180 8-187 75-257 (1255)
6 KOG0472 Leucine-rich repeat pr 99.8 3E-23 6.6E-28 173.2 -3.3 202 2-209 129-331 (565)
7 KOG0444 Cytoskeletal regulator 99.8 2.2E-22 4.7E-27 176.7 1.2 225 2-234 95-323 (1255)
8 KOG0617 Ras suppressor protein 99.8 8.8E-23 1.9E-27 152.4 -3.7 163 30-195 29-193 (264)
9 KOG0617 Ras suppressor protein 99.8 3.5E-22 7.6E-27 149.2 -3.2 196 9-207 31-231 (264)
10 KOG0472 Leucine-rich repeat pr 99.8 4.1E-22 9E-27 166.5 -4.6 188 2-194 106-294 (565)
11 KOG4237 Extracellular matrix p 99.8 2.8E-21 6E-26 161.1 -2.5 245 1-250 81-394 (498)
12 PRK15370 E3 ubiquitin-protein 99.7 6.8E-17 1.5E-21 150.7 14.3 170 11-195 199-387 (754)
13 KOG4237 Extracellular matrix p 99.7 2.5E-19 5.4E-24 149.6 -4.1 235 2-240 61-362 (498)
14 KOG0532 Leucine-rich repeat (L 99.7 8.6E-19 1.9E-23 152.4 -3.7 196 9-209 73-268 (722)
15 PRK15370 E3 ubiquitin-protein 99.7 4.1E-16 8.8E-21 145.5 12.6 169 11-194 178-365 (754)
16 KOG0618 Serine/threonine phosp 99.6 3.5E-17 7.7E-22 149.4 1.6 190 2-196 256-497 (1081)
17 PRK15387 E3 ubiquitin-protein 99.6 3.3E-15 7.2E-20 139.0 10.9 166 12-195 283-465 (788)
18 PRK15387 E3 ubiquitin-protein 99.6 1.6E-14 3.6E-19 134.4 14.0 171 2-192 216-419 (788)
19 KOG0618 Serine/threonine phosp 99.6 1.1E-16 2.4E-21 146.3 -1.0 189 12-205 220-435 (1081)
20 cd00116 LRR_RI Leucine-rich re 99.6 4.4E-15 9.4E-20 127.3 7.5 186 8-195 78-298 (319)
21 PLN03210 Resistant to P. syrin 99.5 8.2E-14 1.8E-18 137.6 14.7 122 12-137 590-714 (1153)
22 COG4886 Leucine-rich repeat (L 99.5 1.2E-14 2.7E-19 128.3 7.8 185 8-196 113-298 (394)
23 cd00116 LRR_RI Leucine-rich re 99.5 1.8E-14 4E-19 123.4 7.7 185 6-191 18-237 (319)
24 PF14580 LRR_9: Leucine-rich r 99.5 6.7E-14 1.4E-18 108.1 5.9 126 9-136 17-149 (175)
25 PLN03210 Resistant to P. syrin 99.5 6.8E-13 1.5E-17 131.2 14.4 184 2-193 549-743 (1153)
26 KOG1259 Nischarin, modulator o 99.4 3.6E-14 7.9E-19 115.4 1.2 179 9-192 212-416 (490)
27 KOG0532 Leucine-rich repeat (L 99.4 1E-14 2.2E-19 127.4 -3.3 179 1-185 89-270 (722)
28 PF14580 LRR_9: Leucine-rich r 99.4 1.2E-12 2.6E-17 101.2 5.8 100 81-183 42-148 (175)
29 COG4886 Leucine-rich repeat (L 99.3 1.1E-12 2.4E-17 115.8 5.9 175 15-192 97-272 (394)
30 KOG3207 Beta-tubulin folding c 99.3 7.3E-13 1.6E-17 112.5 1.9 184 8-191 118-317 (505)
31 KOG1259 Nischarin, modulator o 99.2 1.4E-12 3E-17 106.3 0.6 133 33-168 283-415 (490)
32 KOG3207 Beta-tubulin folding c 99.2 7E-12 1.5E-16 106.7 2.4 185 6-191 141-342 (505)
33 KOG1909 Ran GTPase-activating 99.0 6E-11 1.3E-15 98.4 1.5 191 7-198 54-293 (382)
34 KOG1909 Ran GTPase-activating 99.0 1.1E-10 2.4E-15 96.8 2.7 192 8-199 27-265 (382)
35 KOG4658 Apoptotic ATPase [Sign 99.0 4.4E-10 9.6E-15 107.1 7.0 111 2-112 562-676 (889)
36 KOG0531 Protein phosphatase 1, 99.0 1.1E-10 2.4E-15 103.7 -0.0 176 10-190 71-270 (414)
37 KOG1859 Leucine-rich repeat pr 98.9 7.1E-12 1.5E-16 112.8 -8.2 129 58-191 165-295 (1096)
38 PF13855 LRR_8: Leucine rich r 98.9 7.9E-10 1.7E-14 70.5 3.2 59 11-69 1-61 (61)
39 KOG0531 Protein phosphatase 1, 98.9 1.1E-10 2.5E-15 103.6 -1.3 173 12-190 50-223 (414)
40 KOG4658 Apoptotic ATPase [Sign 98.9 2.1E-09 4.5E-14 102.6 6.6 180 9-192 543-734 (889)
41 PF13855 LRR_8: Leucine rich r 98.9 1E-09 2.2E-14 70.0 2.8 58 35-92 2-60 (61)
42 PLN03150 hypothetical protein; 98.8 1.1E-08 2.3E-13 95.3 8.5 103 83-186 420-526 (623)
43 KOG2120 SCF ubiquitin ligase, 98.8 1.4E-09 3.1E-14 88.8 -0.0 174 12-185 186-373 (419)
44 KOG2982 Uncharacterized conser 98.7 4.3E-09 9.4E-14 86.0 2.6 205 13-239 47-291 (418)
45 PLN03150 hypothetical protein; 98.7 4.2E-08 9.1E-13 91.4 8.9 102 35-137 419-525 (623)
46 KOG2120 SCF ubiquitin ligase, 98.7 6.8E-10 1.5E-14 90.6 -3.8 81 36-117 187-273 (419)
47 KOG4579 Leucine-rich repeat (L 98.7 2.3E-09 5E-14 77.9 -0.7 111 12-123 28-142 (177)
48 KOG4579 Leucine-rich repeat (L 98.6 6E-09 1.3E-13 75.7 0.5 120 83-204 29-152 (177)
49 KOG1644 U2-associated snRNP A' 98.6 6E-08 1.3E-12 75.1 5.7 125 12-137 20-150 (233)
50 KOG1859 Leucine-rich repeat pr 98.5 1.7E-08 3.7E-13 91.5 0.4 157 27-192 102-271 (1096)
51 PF12799 LRR_4: Leucine Rich r 98.5 1.8E-07 3.8E-12 55.1 4.3 39 11-49 1-39 (44)
52 PF12799 LRR_4: Leucine Rich r 98.4 4.2E-07 9.1E-12 53.4 3.8 41 34-74 1-41 (44)
53 PRK15386 type III secretion pr 98.3 3.1E-06 6.8E-11 73.6 8.4 131 8-162 49-187 (426)
54 KOG3665 ZYG-1-like serine/thre 98.3 7.1E-07 1.5E-11 83.5 4.3 132 57-190 122-265 (699)
55 COG5238 RNA1 Ran GTPase-activa 98.2 3.1E-06 6.7E-11 68.8 6.3 185 9-195 28-262 (388)
56 KOG2982 Uncharacterized conser 98.2 3.3E-07 7.2E-12 75.2 -0.0 157 36-193 47-217 (418)
57 PF13306 LRR_5: Leucine rich r 98.2 5.4E-06 1.2E-10 61.1 6.3 122 2-129 3-128 (129)
58 KOG1644 U2-associated snRNP A' 98.1 5.1E-06 1.1E-10 64.6 4.9 101 83-186 44-151 (233)
59 KOG3665 ZYG-1-like serine/thre 98.0 4.4E-06 9.4E-11 78.3 4.5 58 32-91 171-230 (699)
60 PRK15386 type III secretion pr 98.0 2.7E-05 5.9E-10 67.9 8.9 135 30-186 48-188 (426)
61 PF13306 LRR_5: Leucine rich r 97.7 0.0001 2.3E-09 54.1 6.4 103 29-136 7-112 (129)
62 COG5238 RNA1 Ran GTPase-activa 97.7 2.6E-05 5.7E-10 63.5 2.9 181 8-189 55-286 (388)
63 KOG2123 Uncharacterized conser 97.5 1.3E-05 2.7E-10 65.5 -1.9 101 8-110 16-123 (388)
64 KOG2739 Leucine-rich acidic nu 97.2 0.00015 3.3E-09 58.6 1.9 83 33-117 42-129 (260)
65 KOG2123 Uncharacterized conser 97.2 2.8E-05 6.1E-10 63.5 -2.8 99 32-133 17-123 (388)
66 KOG2739 Leucine-rich acidic nu 97.2 0.00025 5.4E-09 57.5 2.4 32 150-181 114-149 (260)
67 PF00560 LRR_1: Leucine Rich R 96.8 0.00061 1.3E-08 33.4 0.9 21 12-32 1-21 (22)
68 KOG4308 LRR-containing protein 96.7 1.4E-05 3E-10 71.9 -9.1 181 13-196 89-311 (478)
69 KOG1947 Leucine rich repeat pr 96.3 0.00096 2.1E-08 60.3 0.1 108 9-116 186-307 (482)
70 PF00560 LRR_1: Leucine Rich R 96.2 0.0016 3.4E-08 31.9 0.4 18 36-53 2-19 (22)
71 KOG4341 F-box protein containi 95.8 0.003 6.4E-08 54.7 0.5 180 6-186 211-437 (483)
72 PF13504 LRR_7: Leucine rich r 95.7 0.0075 1.6E-07 27.4 1.5 15 12-26 2-16 (17)
73 KOG4341 F-box protein containi 95.6 0.0035 7.5E-08 54.3 0.1 175 9-183 266-460 (483)
74 KOG1947 Leucine rich repeat pr 95.4 0.009 1.9E-07 54.0 2.3 106 6-111 209-328 (482)
75 PF13504 LRR_7: Leucine rich r 95.3 0.013 2.8E-07 26.6 1.5 15 35-49 2-16 (17)
76 KOG4308 LRR-containing protein 94.6 0.001 2.3E-08 59.9 -6.2 182 7-189 111-332 (478)
77 KOG0473 Leucine-rich repeat pr 94.5 0.0012 2.7E-08 52.8 -5.2 84 8-92 39-122 (326)
78 smart00369 LRR_TYP Leucine-ric 94.4 0.038 8.2E-07 28.0 2.1 21 57-77 2-22 (26)
79 smart00370 LRR Leucine-rich re 94.4 0.038 8.2E-07 28.0 2.1 21 57-77 2-22 (26)
80 KOG0473 Leucine-rich repeat pr 94.3 0.0011 2.3E-08 53.1 -5.8 84 79-164 40-123 (326)
81 smart00370 LRR Leucine-rich re 94.1 0.055 1.2E-06 27.4 2.2 21 175-195 2-22 (26)
82 smart00369 LRR_TYP Leucine-ric 94.1 0.055 1.2E-06 27.4 2.2 21 175-195 2-22 (26)
83 PF13516 LRR_6: Leucine Rich r 88.9 0.11 2.5E-06 25.6 -0.1 19 174-192 1-19 (24)
84 KOG3864 Uncharacterized conser 88.5 0.12 2.6E-06 40.7 -0.3 81 104-185 101-186 (221)
85 smart00368 LRR_RI Leucine rich 85.9 0.67 1.4E-05 23.9 1.8 23 175-197 2-24 (28)
86 smart00364 LRR_BAC Leucine-ric 83.1 0.82 1.8E-05 23.2 1.3 17 12-28 3-19 (26)
87 smart00365 LRR_SD22 Leucine-ri 81.9 1.3 2.8E-05 22.5 1.7 14 12-25 3-16 (26)
88 KOG3763 mRNA export factor TAP 70.7 2.5 5.4E-05 38.6 1.6 78 9-87 216-307 (585)
89 KOG3864 Uncharacterized conser 70.6 0.63 1.4E-05 36.8 -1.9 77 83-161 103-185 (221)
90 KOG3763 mRNA export factor TAP 64.7 4 8.7E-05 37.3 1.7 63 55-117 216-283 (585)
91 TIGR00864 PCC polycystin catio 58.8 12 0.00027 41.0 4.2 32 158-189 1-33 (2740)
92 smart00367 LRR_CC Leucine-rich 53.0 9.6 0.00021 18.9 1.3 11 11-21 2-12 (26)
93 TIGR00864 PCC polycystin catio 36.9 28 0.0006 38.5 2.7 31 40-70 1-32 (2740)
94 smart00446 LRRcap occurring C- 25.2 46 0.001 16.9 1.0 14 6-19 8-21 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=8.6e-22 Score=192.03 Aligned_cols=187 Identities=28% Similarity=0.467 Sum_probs=99.5
Q ss_pred ChhHHhccCCCcEEEccCCCCCc-cchhccCCCCCcEEEccCCCCC-CcchhhhcCccCceeeccCCcCc-ccChhHhhc
Q 023495 3 PESLTARLLNVVVLDVHSNQLKC-LPNSIGCLSKLKVLDVSGNLLE-SLPKTIENCRSLEELNANFNKLR-QLPDTIGFE 79 (281)
Q Consensus 3 p~~~~~~~~~L~~L~l~~~~l~~-l~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~ 79 (281)
|..++.++.+|++|++++|+++. +|. +.+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+. +
T Consensus 110 p~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~ 186 (968)
T PLN00113 110 PDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT-N 186 (968)
T ss_pred ChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhh-h
Confidence 44443344444444444444431 121 23444455555555444 33555556666666666666554 3333333 5
Q ss_pred CCCCcEEEccCCcCc-ccCccccCCCCCcEEEccCCcCC-CChhhhhCCCCCCeeecccccccccCCCccccCCCcccEE
Q 023495 80 LINLKTLSINCNKIV-ILPQSLTHLTSLRVLDARLNCLK-SLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVEL 157 (281)
Q Consensus 80 l~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 157 (281)
+++|++|++++|.+. .+|..+..+++|+.|++++|.+. .+|..++++++|++|++++| ...+.+|..+..+++|+.|
T Consensus 187 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L 265 (968)
T PLN00113 187 LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN-NLTGPIPSSLGNLKNLQYL 265 (968)
T ss_pred CcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCc-eeccccChhHhCCCCCCEE
Confidence 666666666665554 44555556666666666666555 45555666666666666665 3444555555566666666
Q ss_pred EcCCCCCC-CCChhhhcCCCCCEEEccCCCCCCCCHH
Q 023495 158 DVSYNKIT-TLPDSIGCLRKLQKLSLEGNPLVSPPMD 193 (281)
Q Consensus 158 ~l~~n~i~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 193 (281)
++++|.+. .+|..+..+++|+.|++++|.+.+..+.
T Consensus 266 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 302 (968)
T PLN00113 266 FLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE 302 (968)
T ss_pred ECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh
Confidence 66666554 4455555556666666666655544333
No 2
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=5.1e-23 Score=179.03 Aligned_cols=248 Identities=24% Similarity=0.259 Sum_probs=137.8
Q ss_pred CCCcEEEccCCCCCcc-chhccCCCCCcEEEccCCCCCCcc-hhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEc
Q 023495 11 LNVVVLDVHSNQLKCL-PNSIGCLSKLKVLDVSGNLLESLP-KTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSI 88 (281)
Q Consensus 11 ~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 88 (281)
.++++|+|++|.|+.+ .+.|..+.+|.+|.|+.|+++.+| ..|.++++|+.|+|..|.+..+....|+++++|+.|.+
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL 252 (873)
T ss_pred CCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence 3455555555555544 233445555555555555555553 33444555555555555555444444445555555555
Q ss_pred cCCcCcccCc-cccCCCCCcEEEccCCcCCCChh-hhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCCCC
Q 023495 89 NCNKIVILPQ-SLTHLTSLRVLDARLNCLKSLPE-DLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKITT 166 (281)
Q Consensus 89 ~~~~l~~l~~-~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 166 (281)
.+|.+..+.. .|+.|.++++|++..|++.++.. ++.+++.|+.|+++.| .....-+..+..+.+|+.|+|+.|+|+.
T Consensus 253 qrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N-aI~rih~d~WsftqkL~~LdLs~N~i~~ 331 (873)
T KOG4194|consen 253 QRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN-AIQRIHIDSWSFTQKLKELDLSSNRITR 331 (873)
T ss_pred hhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchh-hhheeecchhhhcccceeEecccccccc
Confidence 5555554433 35566666666666666665543 3566666666666666 3333334455556666666666666666
Q ss_pred CC-hhhhcCCCCCEEEccCCCCCCCCHHHHHhHHHHHHH-HHHhhhcC-C-CCCCCCcchhhchhhccccccccccCChh
Q 023495 167 LP-DSIGCLRKLQKLSLEGNPLVSPPMDVVEQGLSAVKG-YLSEKMNN-D-HKSPKKKSWVGKLVKYGTFNGALRNHRSE 242 (281)
Q Consensus 167 ~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~-~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 242 (281)
++ +.|..+..|++|+|++|.+..+....+. ++..+.. .++.|-.. + ........++..+.++....+++..+.+.
T Consensus 332 l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~-~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~kr 410 (873)
T KOG4194|consen 332 LDEGSFRVLSQLEELNLSHNSIDHLAEGAFV-GLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKR 410 (873)
T ss_pred CChhHHHHHHHhhhhcccccchHHHHhhHHH-HhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchh
Confidence 53 4566666666666666666666555554 3333332 22221111 1 11223445577788888888888888777
Q ss_pred hhcccccCCcccccccCC
Q 023495 243 ERERFIMSDFRAIDGLAS 260 (281)
Q Consensus 243 ~~~~~~~~~~~~l~~~~~ 260 (281)
...++...+..++.+-++
T Consensus 411 Afsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 411 AFSGLEALEHLDLGDNAI 428 (873)
T ss_pred hhccCcccceecCCCCcc
Confidence 888877777766666443
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=1.5e-22 Score=176.18 Aligned_cols=231 Identities=25% Similarity=0.261 Sum_probs=173.0
Q ss_pred HHhccCCCcEEEccCCCCCccch-hccCCCCCcEEEccCCCCCCc-chhhhcCccCceeeccCCcCcccChhHhhcCCCC
Q 023495 6 LTARLLNVVVLDVHSNQLKCLPN-SIGCLSKLKVLDVSGNLLESL-PKTIENCRSLEELNANFNKLRQLPDTIGFELINL 83 (281)
Q Consensus 6 ~~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 83 (281)
-.+-++.|+.|||+.|.|+.++. .|..-.++++|+|++|.|+.+ ...|..+.+|.+|.|+.|.++.+|.-.|.++++|
T Consensus 144 ~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L 223 (873)
T KOG4194|consen 144 ELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKL 223 (873)
T ss_pred HHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchh
Confidence 34556667777777777776653 355556777888888887766 4567777788888888888888888888668888
Q ss_pred cEEEccCCcCccc-CccccCCCCCcEEEccCCcCCCChhh-hhCCCCCCeeecccccccccCCCccccCCCcccEEEcCC
Q 023495 84 KTLSINCNKIVIL-PQSLTHLTSLRVLDARLNCLKSLPED-LENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSY 161 (281)
Q Consensus 84 ~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~ 161 (281)
+.|++.+|++..+ -..|.++++|+.|.+..|.+..+.++ |..|.++++|+|..| .....-..++.+++.|+.|+++.
T Consensus 224 ~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~ 302 (873)
T KOG4194|consen 224 ESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSY 302 (873)
T ss_pred hhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc-hhhhhhcccccccchhhhhccch
Confidence 8888888888755 34678888888888888888877654 788899999999998 44444556788999999999999
Q ss_pred CCCCCC-ChhhhcCCCCCEEEccCCCCCCCCHHHHHhHHHHHHHHHHhhhcCCCCCCCCcchhhchhhcccccccccc
Q 023495 162 NKITTL-PDSIGCLRKLQKLSLEGNPLVSPPMDVVEQGLSAVKGYLSEKMNNDHKSPKKKSWVGKLVKYGTFNGALRN 238 (281)
Q Consensus 162 n~i~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 238 (281)
|.|..+ ++....+++|+.|+|+.|.|+..+++.+. .+..+..+.......+.........++.++.++.-.+.+..
T Consensus 303 NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~-~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~ 379 (873)
T KOG4194|consen 303 NAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFR-VLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSW 379 (873)
T ss_pred hhhheeecchhhhcccceeEeccccccccCChhHHH-HHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEE
Confidence 999976 57788999999999999999999999886 55555554433333333344456667777777766665433
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=2e-21 Score=189.46 Aligned_cols=180 Identities=29% Similarity=0.419 Sum_probs=86.7
Q ss_pred hccCCCcEEEccCCCCC-ccchhccCCCCCcEEEccCCCCC-CcchhhhcCccCceeeccCCcCc-ccChhHhhcCCCCc
Q 023495 8 ARLLNVVVLDVHSNQLK-CLPNSIGCLSKLKVLDVSGNLLE-SLPKTIENCRSLEELNANFNKLR-QLPDTIGFELINLK 84 (281)
Q Consensus 8 ~~~~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 84 (281)
+++++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..+..+.+|++|++++|.+. .+|..+. .+++|+
T Consensus 161 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~ 239 (968)
T PLN00113 161 GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG-GLTSLN 239 (968)
T ss_pred hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHh-cCCCCC
Confidence 44455555555555443 33444445555555555555444 23444444555555555555444 2333332 455555
Q ss_pred EEEccCCcCc-ccCccccCCCCCcEEEccCCcCC-CChhhhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCC
Q 023495 85 TLSINCNKIV-ILPQSLTHLTSLRVLDARLNCLK-SLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYN 162 (281)
Q Consensus 85 ~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n 162 (281)
+|++++|.+. .+|..+..+++|++|++++|.+. .+|..+.++++|+.|++++| ...+.+|..+..+++|+.|++++|
T Consensus 240 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~l~~n 318 (968)
T PLN00113 240 HLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN-SLSGEIPELVIQLQNLEILHLFSN 318 (968)
T ss_pred EEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCC-eeccCCChhHcCCCCCcEEECCCC
Confidence 5555555443 34444455555555555555443 34444455555555555544 333344444445555555555555
Q ss_pred CCC-CCChhhhcCCCCCEEEccCCCCCC
Q 023495 163 KIT-TLPDSIGCLRKLQKLSLEGNPLVS 189 (281)
Q Consensus 163 ~i~-~~~~~~~~l~~L~~L~L~~n~l~~ 189 (281)
.+. .+|..+..+++|+.|++++|.+.+
T Consensus 319 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 346 (968)
T PLN00113 319 NFTGKIPVALTSLPRLQVLQLWSNKFSG 346 (968)
T ss_pred ccCCcCChhHhcCCCCCEEECcCCCCcC
Confidence 444 334445555555555555555543
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=4.3e-22 Score=174.82 Aligned_cols=180 Identities=29% Similarity=0.488 Sum_probs=90.9
Q ss_pred hccCCCcEEEccCCCCC--ccchhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcE
Q 023495 8 ARLLNVVVLDVHSNQLK--CLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKT 85 (281)
Q Consensus 8 ~~~~~L~~L~l~~~~l~--~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 85 (281)
+.++.||.+.+.+|++. .||+.+..+..|++|||++|++.++|..+.+..++.+|+|++|+|..+|..++.+++.|-.
T Consensus 75 s~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 75 SDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLF 154 (1255)
T ss_pred ccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhh
Confidence 34555556666666554 4555555566666666666666666666655566666666666666666655555556666
Q ss_pred EEccCCcCcccCccccCCCCCcEEEccCCcCCCCh-hhhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCC
Q 023495 86 LSINCNKIVILPQSLTHLTSLRVLDARLNCLKSLP-EDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKI 164 (281)
Q Consensus 86 L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i 164 (281)
||+++|++..+|..+.++..|++|++++|.+...- ..+..|++|++|.+++.......+|.++..+.+|+.+|++.|.+
T Consensus 155 LDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L 234 (1255)
T KOG0444|consen 155 LDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL 234 (1255)
T ss_pred hccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC
Confidence 66666666655555555555555555555443110 11223334444444433223333344444444444444444444
Q ss_pred CCCChhhhcCCCCCEEEccCCCC
Q 023495 165 TTLPDSIGCLRKLQKLSLEGNPL 187 (281)
Q Consensus 165 ~~~~~~~~~l~~L~~L~L~~n~l 187 (281)
..+|+.+..+++|+.|+|++|.|
T Consensus 235 p~vPecly~l~~LrrLNLS~N~i 257 (1255)
T KOG0444|consen 235 PIVPECLYKLRNLRRLNLSGNKI 257 (1255)
T ss_pred CcchHHHhhhhhhheeccCcCce
Confidence 44444444444444444443333
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.85 E-value=3e-23 Score=173.21 Aligned_cols=202 Identities=39% Similarity=0.572 Sum_probs=151.4
Q ss_pred CChhHHhccCCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCC
Q 023495 2 IPESLTARLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELI 81 (281)
Q Consensus 2 ip~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 81 (281)
+|+++ +.+..+..++..+|+++++|+.+..+.+|..+++.+|.+.++|+...++..|++||...|.++.+|+.+. .+.
T Consensus 129 l~~~i-~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg-~l~ 206 (565)
T KOG0472|consen 129 LPDSI-GRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELG-GLE 206 (565)
T ss_pred cCchH-HHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhc-chh
Confidence 34443 4555555555555555555555555555566666666666555444446666666666666677777766 677
Q ss_pred CCcEEEccCCcCcccCccccCCCCCcEEEccCCcCCCChhhhh-CCCCCCeeecccccccccCCCccccCCCcccEEEcC
Q 023495 82 NLKTLSINCNKIVILPQSLTHLTSLRVLDARLNCLKSLPEDLE-NLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVS 160 (281)
Q Consensus 82 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~ 160 (281)
+|.-|++.+|.+..+| .|.+|+.|.+++++.|+++.+|.... ++.++.+|++.+| ....+|+.++.+.+|..||++
T Consensus 207 ~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN--klke~Pde~clLrsL~rLDlS 283 (565)
T KOG0472|consen 207 SLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN--KLKEVPDEICLLRSLERLDLS 283 (565)
T ss_pred hhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc--ccccCchHHHHhhhhhhhccc
Confidence 7777777777777777 56777777888888888888877654 8899999999999 788899999999999999999
Q ss_pred CCCCCCCChhhhcCCCCCEEEccCCCCCCCCHHHHHhHHHHHHHHHHhh
Q 023495 161 YNKITTLPDSIGCLRKLQKLSLEGNPLVSPPMDVVEQGLSAVKGYLSEK 209 (281)
Q Consensus 161 ~n~i~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~ 209 (281)
+|.|+.+|..++++ +|+.|-+.||++..+.-+++..+...+..|+...
T Consensus 284 NN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~ 331 (565)
T KOG0472|consen 284 NNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSK 331 (565)
T ss_pred CCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHh
Confidence 99999999999999 9999999999999998888887777777777663
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=2.2e-22 Score=176.71 Aligned_cols=225 Identities=30% Similarity=0.390 Sum_probs=165.0
Q ss_pred CChhHHhccCCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcchh-hhcCccCceeeccCCcCcccChhHhhcC
Q 023495 2 IPESLTARLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKT-IENCRSLEELNANFNKLRQLPDTIGFEL 80 (281)
Q Consensus 2 ip~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l 80 (281)
||..+| ++..|+.|||++|++.++|..+....++-.|+|++|+|..+|.. |.++..|-+|||++|++..+|+++. .+
T Consensus 95 iP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~R-RL 172 (1255)
T KOG0444|consen 95 IPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIR-RL 172 (1255)
T ss_pred CCchhc-ccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHH-HH
Confidence 677764 67888888888888888888887778888888888888888644 4577788888888888888888887 78
Q ss_pred CCCcEEEccCCcCccc-CccccCCCCCcEEEccCCcCC--CChhhhhCCCCCCeeecccccccccCCCccccCCCcccEE
Q 023495 81 INLKTLSINCNKIVIL-PQSLTHLTSLRVLDARLNCLK--SLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVEL 157 (281)
Q Consensus 81 ~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~l~--~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 157 (281)
.+|++|.+++|.+... -..+..+++|+.|.+++.+.+ .+|.++..+.+|..++++.| ....+|+.+..+.+|+.|
T Consensus 173 ~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N--~Lp~vPecly~l~~LrrL 250 (1255)
T KOG0444|consen 173 SMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN--NLPIVPECLYKLRNLRRL 250 (1255)
T ss_pred hhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc--CCCcchHHHhhhhhhhee
Confidence 8888888888877633 123455677888888887766 67888888888888888888 667778888888888888
Q ss_pred EcCCCCCCCCChhhhcCCCCCEEEccCCCCCCCCHHHHHhHHHHHHHHHHhhhcCCCCCCCCcchhhchhhcccccc
Q 023495 158 DVSYNKITTLPDSIGCLRKLQKLSLEGNPLVSPPMDVVEQGLSAVKGYLSEKMNNDHKSPKKKSWVGKLVKYGTFNG 234 (281)
Q Consensus 158 ~l~~n~i~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 234 (281)
+|++|.|+++......-.+|++|+|+.|+++.+|..+.. .....+.|..+|-. .....+++++++..+..+..
T Consensus 251 NLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcK-L~kL~kLy~n~NkL---~FeGiPSGIGKL~~Levf~a 323 (1255)
T KOG0444|consen 251 NLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCK-LTKLTKLYANNNKL---TFEGIPSGIGKLIQLEVFHA 323 (1255)
T ss_pred ccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhh-hHHHHHHHhccCcc---cccCCccchhhhhhhHHHHh
Confidence 888888887765556666788888888888888766552 33333334333322 22335666776666665554
No 8
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.83 E-value=8.8e-23 Score=152.42 Aligned_cols=163 Identities=33% Similarity=0.529 Sum_probs=130.1
Q ss_pred ccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEccCCcCcccCccccCCCCCcEE
Q 023495 30 IGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINCNKIVILPQSLTHLTSLRVL 109 (281)
Q Consensus 30 ~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L 109 (281)
+.++.+.+.|.+++|.++.+|+.+..+.+|+.|++.+|+++.+|..+. .+++|+.|+++.|++..+|.+|+.++.|+.|
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~is-sl~klr~lnvgmnrl~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSIS-SLPKLRILNVGMNRLNILPRGFGSFPALEVL 107 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhh-hchhhhheecchhhhhcCccccCCCchhhhh
Confidence 336677777888888888888788888888888888888888888776 7888888888888888888888888888888
Q ss_pred EccCCcCC--CChhhhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCCCCCChhhhcCCCCCEEEccCCCC
Q 023495 110 DARLNCLK--SLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKITTLPDSIGCLRKLQKLSLEGNPL 187 (281)
Q Consensus 110 ~l~~n~l~--~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~l~~L~~L~L~~n~l 187 (281)
|+++|++. .+|..|..++-|+.|.+++| ....+|..++++++|+.|.+..|.+-++|..++.+..|++|.+.+|.+
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dn--dfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDN--DFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCC--CcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccccee
Confidence 88888776 67777777788888888887 567777788888888888888888888888888888888888888888
Q ss_pred CCCCHHHH
Q 023495 188 VSPPMDVV 195 (281)
Q Consensus 188 ~~~~~~~~ 195 (281)
+.+|++.-
T Consensus 186 ~vlppel~ 193 (264)
T KOG0617|consen 186 TVLPPELA 193 (264)
T ss_pred eecChhhh
Confidence 88777654
No 9
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.82 E-value=3.5e-22 Score=149.23 Aligned_cols=196 Identities=34% Similarity=0.521 Sum_probs=174.1
Q ss_pred ccCCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEc
Q 023495 9 RLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSI 88 (281)
Q Consensus 9 ~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 88 (281)
++.+++.|.+++|.++.+|+.+..+.+|+.|++.+|+++++|..+..++.|+.|+++.|++..+|.+.. .++.|+.||+
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfg-s~p~levldl 109 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFG-SFPALEVLDL 109 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccC-CCchhhhhhc
Confidence 567888999999999999999999999999999999999999999999999999999999999999987 8999999999
Q ss_pred cCCcCc--ccCccccCCCCCcEEEccCCcCCCChhhhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCCCC
Q 023495 89 NCNKIV--ILPQSLTHLTSLRVLDARLNCLKSLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKITT 166 (281)
Q Consensus 89 ~~~~l~--~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 166 (281)
..|.+. .+|..|-.+..|+.|.+++|.+..+|..++++++|+.|.+.+| ..-.+|..++.++.|++|++.+|+++.
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn--dll~lpkeig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN--DLLSLPKEIGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC--chhhCcHHHHHHHHHHHHhcccceeee
Confidence 999987 7899999999999999999999999999999999999999999 566789999999999999999999999
Q ss_pred CChhhhcCCCC---CEEEccCCCCCCCCHHHHHhHHHHHHHHHH
Q 023495 167 LPDSIGCLRKL---QKLSLEGNPLVSPPMDVVEQGLSAVKGYLS 207 (281)
Q Consensus 167 ~~~~~~~l~~L---~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~ 207 (281)
+|+.++.+.-+ ..+.+..|+......+.+.-+......++.
T Consensus 188 lppel~~l~l~~~k~v~r~E~NPwv~pIaeQf~lG~shV~~yir 231 (264)
T KOG0617|consen 188 LPPELANLDLVGNKQVMRMEENPWVNPIAEQFLLGISHVIDYIR 231 (264)
T ss_pred cChhhhhhhhhhhHHHHhhhhCCCCChHHHHHHhhHHHHHHHHh
Confidence 99877765432 456778888777666665556666666554
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.81 E-value=4.1e-22 Score=166.49 Aligned_cols=188 Identities=38% Similarity=0.535 Sum_probs=135.9
Q ss_pred CChhHHhccCCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCC
Q 023495 2 IPESLTARLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELI 81 (281)
Q Consensus 2 ip~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 81 (281)
+|+.+ ....+++.++++.|.+.++++.++.+..|..++..+|++.++|.++..+.+|..+++.+|.+..+|+... .+.
T Consensus 106 lp~~i-~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~ 183 (565)
T KOG0472|consen 106 LPEQI-GSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMK 183 (565)
T ss_pred ccHHH-hhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHH-HHH
Confidence 45554 5566666666666666666666666666667777777777777666667777777777777777776666 477
Q ss_pred CCcEEEccCCcCcccCccccCCCCCcEEEccCCcCCCChhhhhCCCCCCeeecccccccccCCCcccc-CCCcccEEEcC
Q 023495 82 NLKTLSINCNKIVILPQSLTHLTSLRVLDARLNCLKSLPEDLENLINLEVLNISQNFQYLETLPYSIG-LLMSLVELDVS 160 (281)
Q Consensus 82 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~~~~L~~L~l~ 160 (281)
.|++||...|.+..+|+.++.+.+|.-|++..|.+..+| .|..|..|..++++.| .+..+|.... ++.++..||+.
T Consensus 184 ~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N--~i~~lpae~~~~L~~l~vLDLR 260 (565)
T KOG0472|consen 184 RLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGEN--QIEMLPAEHLKHLNSLLVLDLR 260 (565)
T ss_pred HHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhccc--HHHhhHHHHhcccccceeeecc
Confidence 777777777777777777777777777777777777776 6777777777777777 6666776654 67778888888
Q ss_pred CCCCCCCChhhhcCCCCCEEEccCCCCCCCCHHH
Q 023495 161 YNKITTLPDSIGCLRKLQKLSLEGNPLVSPPMDV 194 (281)
Q Consensus 161 ~n~i~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 194 (281)
+|+++++|+.+.-+.+|..||+++|.|++.|+..
T Consensus 261 dNklke~Pde~clLrsL~rLDlSNN~is~Lp~sL 294 (565)
T KOG0472|consen 261 DNKLKEVPDEICLLRSLERLDLSNNDISSLPYSL 294 (565)
T ss_pred ccccccCchHHHHhhhhhhhcccCCccccCCccc
Confidence 8888888887777788888888888887777653
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.79 E-value=2.8e-21 Score=161.14 Aligned_cols=245 Identities=23% Similarity=0.250 Sum_probs=176.0
Q ss_pred CCChhHHhccCCCcEEEccCCCCCcc-chhccCCCCCcEEEccC-CCCCCcc-hhhhcCccCceeeccCCcCcccChhHh
Q 023495 1 MIPESLTARLLNVVVLDVHSNQLKCL-PNSIGCLSKLKVLDVSG-NLLESLP-KTIENCRSLEELNANFNKLRQLPDTIG 77 (281)
Q Consensus 1 ~ip~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~L~~-n~l~~l~-~~~~~l~~L~~L~L~~n~l~~~~~~~~ 77 (281)
.||..+|+.+++||+|||++|+|+.| |++|.+++.|..|.+.+ |+|+.+| +.|.++..|+-|.+.-|.+..+....+
T Consensus 81 ~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al 160 (498)
T KOG4237|consen 81 SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDAL 160 (498)
T ss_pred cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHH
Confidence 47888889999999999999999888 77888888888777666 7888886 457788888888888888888887777
Q ss_pred hcCCCCcEEEccCCcCcccCc-cccCCCCCcEEEccCCcC----------------------------------------
Q 023495 78 FELINLKTLSINCNKIVILPQ-SLTHLTSLRVLDARLNCL---------------------------------------- 116 (281)
Q Consensus 78 ~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~l---------------------------------------- 116 (281)
..++++..|.+..|.+..++. .+..+..++++.+..|..
T Consensus 161 ~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~ 240 (498)
T KOG4237|consen 161 RDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQED 240 (498)
T ss_pred HHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccc
Confidence 788888888888887777766 466666666665544431
Q ss_pred ---------------------C-CChh-hhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCCCCCC-hhhh
Q 023495 117 ---------------------K-SLPE-DLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKITTLP-DSIG 172 (281)
Q Consensus 117 ---------------------~-~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~-~~~~ 172 (281)
. ..|. -|..+++|++|++++| .....-+.+|.....+++|.|..|++..+. ..|.
T Consensus 241 a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~ 319 (498)
T KOG4237|consen 241 ARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN-KITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQ 319 (498)
T ss_pred hhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC-ccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhh
Confidence 0 1111 2677889999999998 455555667888889999999999888764 6788
Q ss_pred cCCCCCEEEccCCCCCCCCHHHHHhHHHHHHHHH-HhhhcCCCCCCCCcchhhchhhccccccccccCChhhhcccccC
Q 023495 173 CLRKLQKLSLEGNPLVSPPMDVVEQGLSAVKGYL-SEKMNNDHKSPKKKSWVGKLVKYGTFNGALRNHRSEERERFIMS 250 (281)
Q Consensus 173 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 250 (281)
++..|+.|+|.+|+|+.+.+..+......-...+ .+.+..++...+...|+.+-. ..+...|+++.....+++.
T Consensus 320 ~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~----~~~~~~Cq~p~~~~~~~~~ 394 (498)
T KOG4237|consen 320 GLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS----VVGNPRCQSPGFVRQIPIS 394 (498)
T ss_pred ccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCC----CCCCCCCCCCchhccccch
Confidence 9999999999999999998888876655444433 333444444444444544333 4444566655444444433
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.72 E-value=6.8e-17 Score=150.67 Aligned_cols=170 Identities=31% Similarity=0.507 Sum_probs=119.3
Q ss_pred CCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEccC
Q 023495 11 LNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINC 90 (281)
Q Consensus 11 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 90 (281)
+.++.|++++|+++.+|..+. .+|++|++++|.++.+|..+. .+|+.|++++|.+..+|..+. .+|+.|++++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~---s~L~~L~Ls~ 271 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP---SALQSLDLFH 271 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh---CCCCEEECcC
Confidence 467888888888888876553 478888888888887776553 367777777777777776543 3677777777
Q ss_pred CcCcccCccccCCCCCcEEEccCCcCCCChhhhh-------------------CCCCCCeeecccccccccCCCccccCC
Q 023495 91 NKIVILPQSLTHLTSLRVLDARLNCLKSLPEDLE-------------------NLINLEVLNISQNFQYLETLPYSIGLL 151 (281)
Q Consensus 91 ~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~-------------------~l~~L~~L~l~~n~~~~~~~~~~~~~~ 151 (281)
|.+..+|..+. ++|+.|++++|+++.+|..+. -.++|+.|++++| ....+|..+.
T Consensus 272 N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N--~Lt~LP~~l~-- 345 (754)
T PRK15370 272 NKISCLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGEN--ALTSLPASLP-- 345 (754)
T ss_pred CccCccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCC--ccccCChhhc--
Confidence 77776665442 467777777776665543221 1245677777776 3444555443
Q ss_pred CcccEEEcCCCCCCCCChhhhcCCCCCEEEccCCCCCCCCHHHH
Q 023495 152 MSLVELDVSYNKITTLPDSIGCLRKLQKLSLEGNPLVSPPMDVV 195 (281)
Q Consensus 152 ~~L~~L~l~~n~i~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 195 (281)
++|+.|++++|+++.+|..+. ++|+.|++++|.++.+|....
T Consensus 346 ~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~Lt~LP~~l~ 387 (754)
T PRK15370 346 PELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNLPENLP 387 (754)
T ss_pred CcccEEECCCCCCCcCChhhc--CCcCEEECCCCcCCCCCHhHH
Confidence 689999999999988887553 689999999999998887654
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.70 E-value=2.5e-19 Score=149.56 Aligned_cols=235 Identities=25% Similarity=0.280 Sum_probs=167.1
Q ss_pred CChhHHhccCCCcEEEccCCCCCccch-hccCCCCCcEEEccCCCCCCc-chhhhcCccCceeeccC-CcCcccChhHhh
Q 023495 2 IPESLTARLLNVVVLDVHSNQLKCLPN-SIGCLSKLKVLDVSGNLLESL-PKTIENCRSLEELNANF-NKLRQLPDTIGF 78 (281)
Q Consensus 2 ip~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~ 78 (281)
||.++ -+..+.++|.-|+|++||+ +|+.+++|++|||++|.|+.| |++|.++.+|..|.+.+ |+|+.+|...|.
T Consensus 61 VP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~ 137 (498)
T KOG4237|consen 61 VPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFG 137 (498)
T ss_pred CcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence 55554 3456789999999999964 699999999999999999988 89999999988887666 999999999999
Q ss_pred cCCCCcEEEccCCcCccc-CccccCCCCCcEEEccCCcCCCChh-hhhCCCCCCeeeccccc------------------
Q 023495 79 ELINLKTLSINCNKIVIL-PQSLTHLTSLRVLDARLNCLKSLPE-DLENLINLEVLNISQNF------------------ 138 (281)
Q Consensus 79 ~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~------------------ 138 (281)
++..++.|.+.-|.+.-+ ...+..++++..|.+.+|.+..++. .+..+..++++.+..|.
T Consensus 138 gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ 217 (498)
T KOG4237|consen 138 GLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNP 217 (498)
T ss_pred hHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhch
Confidence 999999999999998854 4568999999999999999998877 57888888888887762
Q ss_pred ------------------------------------------ccccCCC-ccccCCCcccEEEcCCCCCCCC-ChhhhcC
Q 023495 139 ------------------------------------------QYLETLP-YSIGLLMSLVELDVSYNKITTL-PDSIGCL 174 (281)
Q Consensus 139 ------------------------------------------~~~~~~~-~~~~~~~~L~~L~l~~n~i~~~-~~~~~~l 174 (281)
.....-| ..|..+++|+.|++++|.|+.+ +.+|.+.
T Consensus 218 ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~ 297 (498)
T KOG4237|consen 218 IETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGA 297 (498)
T ss_pred hhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcch
Confidence 0000111 1245566777777777777766 4566777
Q ss_pred CCCCEEEccCCCCCCCCHHHHHhHHHHHHHHHHhhhcCCCCCCCCcchhhchhhccccccccccCC
Q 023495 175 RKLQKLSLEGNPLVSPPMDVVEQGLSAVKGYLSEKMNNDHKSPKKKSWVGKLVKYGTFNGALRNHR 240 (281)
Q Consensus 175 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 240 (281)
.++++|.|..|+|..+...++. ++..++.+-..........+..+.-...+..+..+.+.+.|..
T Consensus 298 a~l~eL~L~~N~l~~v~~~~f~-~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC 362 (498)
T KOG4237|consen 298 AELQELYLTRNKLEFVSSGMFQ-GLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNC 362 (498)
T ss_pred hhhhhhhcCcchHHHHHHHhhh-ccccceeeeecCCeeEEEecccccccceeeeeehccCcccCcc
Confidence 7777777777777666655554 3333333221122222233333334445556666666665553
No 14
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.68 E-value=8.6e-19 Score=152.43 Aligned_cols=196 Identities=37% Similarity=0.534 Sum_probs=177.9
Q ss_pred ccCCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEc
Q 023495 9 RLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSI 88 (281)
Q Consensus 9 ~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 88 (281)
.+..-...|++.|.+..+|..+..+..|+.+.++.|.+..+|..+..+..|.+++++.|+++.+|..++ .++ |+.|-+
T Consensus 73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC-~lp-Lkvli~ 150 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLC-DLP-LKVLIV 150 (722)
T ss_pred cccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhh-cCc-ceeEEE
Confidence 445556789999999999999988899999999999999999999999999999999999999999997 454 999999
Q ss_pred cCCcCcccCccccCCCCCcEEEccCCcCCCChhhhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCCCCCC
Q 023495 89 NCNKIVILPQSLTHLTSLRVLDARLNCLKSLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKITTLP 168 (281)
Q Consensus 89 ~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~ 168 (281)
++|.++.+|..++.+..|..||.+.|.+..+|..++.+.+|+.|.+..| ....+|+.++.+ .|..||+++|++..+|
T Consensus 151 sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn--~l~~lp~El~~L-pLi~lDfScNkis~iP 227 (722)
T KOG0532|consen 151 SNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN--HLEDLPEELCSL-PLIRLDFSCNKISYLP 227 (722)
T ss_pred ecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh--hhhhCCHHHhCC-ceeeeecccCceeecc
Confidence 9999999999999889999999999999999999999999999999999 677788888855 6999999999999999
Q ss_pred hhhhcCCCCCEEEccCCCCCCCCHHHHHhHHHHHHHHHHhh
Q 023495 169 DSIGCLRKLQKLSLEGNPLVSPPMDVVEQGLSAVKGYLSEK 209 (281)
Q Consensus 169 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~ 209 (281)
-.|..|..|++|-|++|++++.|.++..++.-....|+.-.
T Consensus 228 v~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~q 268 (722)
T KOG0532|consen 228 VDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQ 268 (722)
T ss_pred hhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecch
Confidence 99999999999999999999999999887776666665533
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.67 E-value=4.1e-16 Score=145.53 Aligned_cols=169 Identities=30% Similarity=0.445 Sum_probs=132.4
Q ss_pred CCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEccC
Q 023495 11 LNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINC 90 (281)
Q Consensus 11 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 90 (281)
.+...|++++++++.+|..+. +.|+.|++++|.++.+|..+. .+|++|++++|.++.+|..+. .+|+.|++++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~---~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP---DTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh---ccccEEECcC
Confidence 467899999999999987664 579999999999999987664 589999999999999987654 4799999999
Q ss_pred CcCcccCccccCCCCCcEEEccCCcCCCChhhhhCCCCCCeeecccccccccCCCcccc-------------------CC
Q 023495 91 NKIVILPQSLTHLTSLRVLDARLNCLKSLPEDLENLINLEVLNISQNFQYLETLPYSIG-------------------LL 151 (281)
Q Consensus 91 ~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-------------------~~ 151 (281)
|.+..+|..+. .+|+.|++++|+++.+|..+. ++|+.|++++| .+..+|..+. -.
T Consensus 251 N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N--~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~ 324 (754)
T PRK15370 251 NRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN--SIRTLPAHLPSGITHLNVQSNSLTALPETLP 324 (754)
T ss_pred CccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC--ccccCcccchhhHHHHHhcCCccccCCcccc
Confidence 99998887654 589999999999999887654 58999999998 3334443221 12
Q ss_pred CcccEEEcCCCCCCCCChhhhcCCCCCEEEccCCCCCCCCHHH
Q 023495 152 MSLVELDVSYNKITTLPDSIGCLRKLQKLSLEGNPLVSPPMDV 194 (281)
Q Consensus 152 ~~L~~L~l~~n~i~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 194 (281)
++|+.|++++|.++.+|..+. ++|+.|++++|.++.+|...
T Consensus 325 ~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~l 365 (754)
T PRK15370 325 PGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETL 365 (754)
T ss_pred ccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhh
Confidence 456677777777776665443 57888888888887766533
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.64 E-value=3.5e-17 Score=149.44 Aligned_cols=190 Identities=31% Similarity=0.445 Sum_probs=125.9
Q ss_pred CChhHHhccCCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhH-----
Q 023495 2 IPESLTARLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTI----- 76 (281)
Q Consensus 2 ip~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~----- 76 (281)
+| +..+.|.+|+.++..+|+++.+|..+....+|+.|....|.+..+|+....+..|++|+|..|++..+|+..
T Consensus 256 lp-~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~ 334 (1081)
T KOG0618|consen 256 LP-EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLN 334 (1081)
T ss_pred ch-HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhh
Confidence 45 344666666666666666665555544444444444444444444444444555555555555444333211
Q ss_pred --------------------------------------------hhcCCCCcEEEccCCcCcccCcc-ccCCCCCcEEEc
Q 023495 77 --------------------------------------------GFELINLKTLSINCNKIVILPQS-LTHLTSLRVLDA 111 (281)
Q Consensus 77 --------------------------------------------~~~l~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l 111 (281)
..++.+|+.|++++|++..+|.. +.++..|+.|++
T Consensus 335 ~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~L 414 (1081)
T KOG0618|consen 335 ASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNL 414 (1081)
T ss_pred HHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhc
Confidence 12677788888888888877764 677888888888
Q ss_pred cCCcCCCChhhhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCCC--CCChhhhcCCCCCEEEccCCCCCC
Q 023495 112 RLNCLKSLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKIT--TLPDSIGCLRKLQKLSLEGNPLVS 189 (281)
Q Consensus 112 ~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~--~~~~~~~~l~~L~~L~L~~n~l~~ 189 (281)
++|.++.+|..+..++.|++|....| .+..+| .+..++.|+.+|++.|+++ .+|..... ++|++||++||.-..
T Consensus 415 SGNkL~~Lp~tva~~~~L~tL~ahsN--~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 415 SGNKLTTLPDTVANLGRLHTLRAHSN--QLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLV 490 (1081)
T ss_pred ccchhhhhhHHHHhhhhhHHHhhcCC--ceeech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccc
Confidence 88888888888888888888888877 566677 7888888999999999888 34444333 789999999987545
Q ss_pred CCHHHHH
Q 023495 190 PPMDVVE 196 (281)
Q Consensus 190 ~~~~~~~ 196 (281)
.+...+.
T Consensus 491 ~d~~~l~ 497 (1081)
T KOG0618|consen 491 FDHKTLK 497 (1081)
T ss_pred cchhhhH
Confidence 5544443
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.61 E-value=3.3e-15 Score=139.02 Aligned_cols=166 Identities=34% Similarity=0.392 Sum_probs=108.4
Q ss_pred CCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcchhhhc----------------C-ccCceeeccCCcCcccCh
Q 023495 12 NVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIEN----------------C-RSLEELNANFNKLRQLPD 74 (281)
Q Consensus 12 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~----------------l-~~L~~L~L~~n~l~~~~~ 74 (281)
.|+.|++++|+++.+|. ..++|+.|++++|.++.+|..... + .+|++|++++|.++.+|.
T Consensus 283 ~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~ 359 (788)
T PRK15387 283 GLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPT 359 (788)
T ss_pred hcCEEECcCCccccccc---cccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCCCCC
Confidence 34555555555555543 235677777777777665431110 0 245555555555555443
Q ss_pred hHhhcCCCCcEEEccCCcCcccCccccCCCCCcEEEccCCcCCCChhhhhCCCCCCeeecccccccccCCCccccCCCcc
Q 023495 75 TIGFELINLKTLSINCNKIVILPQSLTHLTSLRVLDARLNCLKSLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSL 154 (281)
Q Consensus 75 ~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L 154 (281)
. ..+|+.|++++|.+..+|.. ..+|+.|++++|.++.+|.. .++|+.|++++| .+..+|.. +.+|
T Consensus 360 l----p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N--~LssIP~l---~~~L 424 (788)
T PRK15387 360 L----PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVL---PSELKELMVSGN--RLTSLPML---PSGL 424 (788)
T ss_pred C----CcccceehhhccccccCccc---ccccceEEecCCcccCCCCc---ccCCCEEEccCC--cCCCCCcc---hhhh
Confidence 2 23455555555555555432 24678888888888877653 357888888888 45556643 3467
Q ss_pred cEEEcCCCCCCCCChhhhcCCCCCEEEccCCCCCCCCHHHH
Q 023495 155 VELDVSYNKITTLPDSIGCLRKLQKLSLEGNPLVSPPMDVV 195 (281)
Q Consensus 155 ~~L~l~~n~i~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 195 (281)
+.|++++|+++.+|..+..+++|+.|+|++|++++..+..+
T Consensus 425 ~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 425 LSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hhhhhccCcccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 88999999999999999999999999999999987665554
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.59 E-value=1.6e-14 Score=134.43 Aligned_cols=171 Identities=35% Similarity=0.406 Sum_probs=91.3
Q ss_pred CChhHHhccCCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHh----
Q 023495 2 IPESLTARLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIG---- 77 (281)
Q Consensus 2 ip~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~---- 77 (281)
||..+. .+|+.|++.+|+++.+|. ..++|++|++++|.++.+|.. .++|++|++++|.+..+|....
T Consensus 216 LP~~l~---~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~lp~~L~~ 286 (788)
T PRK15387 216 LPDCLP---AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPALPSGLCK 286 (788)
T ss_pred CCcchh---cCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhchhhcCE
Confidence 566553 357777777777777764 246677777777777766532 2344444444444443332110
Q ss_pred ------------hcCCCCcEEEccCCcCcccCccccC-----------------CCCCcEEEccCCcCCCChhhhhCCCC
Q 023495 78 ------------FELINLKTLSINCNKIVILPQSLTH-----------------LTSLRVLDARLNCLKSLPEDLENLIN 128 (281)
Q Consensus 78 ------------~~l~~L~~L~l~~~~l~~l~~~~~~-----------------l~~L~~L~l~~n~l~~l~~~~~~l~~ 128 (281)
...++|+.|++++|.+..+|..... ..+|+.|++++|+++.+|.. ..+
T Consensus 287 L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~l---p~~ 363 (788)
T PRK15387 287 LWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTL---PSE 363 (788)
T ss_pred EECcCCccccccccccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCCCCCC---Ccc
Confidence 0124556666666555544321100 01344444444444444321 123
Q ss_pred CCeeecccccccccCCCccccCCCcccEEEcCCCCCCCCChhhhcCCCCCEEEccCCCCCCCCH
Q 023495 129 LEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKITTLPDSIGCLRKLQKLSLEGNPLVSPPM 192 (281)
Q Consensus 129 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 192 (281)
|+.|++++| .+..+|.. ..+|+.|++++|.++.+|.. .++|+.|++++|.++.+|.
T Consensus 364 L~~L~Ls~N--~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~ 419 (788)
T PRK15387 364 LYKLWAYNN--RLTSLPAL---PSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPM 419 (788)
T ss_pred cceehhhcc--ccccCccc---ccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCc
Confidence 444444444 22233322 24577788888877777653 3568888888888888764
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.59 E-value=1.1e-16 Score=146.30 Aligned_cols=189 Identities=33% Similarity=0.464 Sum_probs=127.5
Q ss_pred CCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEccCC
Q 023495 12 NVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINCN 91 (281)
Q Consensus 12 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~ 91 (281)
+++.|+.++|.++.+...+ --.+|+++++++|.++.+|..+..+.+|+.+++.+|.+..+|..++ ..++|+.|....|
T Consensus 220 ~l~~L~a~~n~l~~~~~~p-~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~-~~~~L~~l~~~~n 297 (1081)
T KOG0618|consen 220 SLTALYADHNPLTTLDVHP-VPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRIS-RITSLVSLSAAYN 297 (1081)
T ss_pred chheeeeccCcceeecccc-ccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHh-hhhhHHHHHhhhh
Confidence 4445555555444321111 2245777777777777777777777777777777777777777766 6777777777777
Q ss_pred cCcccCccccCCCCCcEEEccCCcCCCChhhh--------------------------hCCCCCCeeecccccccccCCC
Q 023495 92 KIVILPQSLTHLTSLRVLDARLNCLKSLPEDL--------------------------ENLINLEVLNISQNFQYLETLP 145 (281)
Q Consensus 92 ~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~--------------------------~~l~~L~~L~l~~n~~~~~~~~ 145 (281)
.+..+|......++|++|++..|.+..+|..+ ..++.|+.|.+.+| ......-
T Consensus 298 el~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN-~Ltd~c~ 376 (1081)
T KOG0618|consen 298 ELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANN-HLTDSCF 376 (1081)
T ss_pred hhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcC-cccccch
Confidence 77777777777777777777777776555321 12335666777777 4444444
Q ss_pred ccccCCCcccEEEcCCCCCCCCCh-hhhcCCCCCEEEccCCCCCCCCHHHHHhHHHHHHHH
Q 023495 146 YSIGLLMSLVELDVSYNKITTLPD-SIGCLRKLQKLSLEGNPLVSPPMDVVEQGLSAVKGY 205 (281)
Q Consensus 146 ~~~~~~~~L~~L~l~~n~i~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~ 205 (281)
..+.+..+|+.|+|+.|++..+|+ .+.++..|+.|+|+||+++.++..+. .+..+..+
T Consensus 377 p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva--~~~~L~tL 435 (1081)
T KOG0618|consen 377 PVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVA--NLGRLHTL 435 (1081)
T ss_pred hhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHH--hhhhhHHH
Confidence 457778889999999999988884 46888889999999999998885554 34444443
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.57 E-value=4.4e-15 Score=127.28 Aligned_cols=186 Identities=28% Similarity=0.322 Sum_probs=79.4
Q ss_pred hccCCCcEEEccCCCCCc-cchhccCCC---CCcEEEccCCCCCC-----cchhhhcC-ccCceeeccCCcCcc-----c
Q 023495 8 ARLLNVVVLDVHSNQLKC-LPNSIGCLS---KLKVLDVSGNLLES-----LPKTIENC-RSLEELNANFNKLRQ-----L 72 (281)
Q Consensus 8 ~~~~~L~~L~l~~~~l~~-l~~~~~~l~---~L~~L~L~~n~l~~-----l~~~~~~l-~~L~~L~L~~n~l~~-----~ 72 (281)
.++++|+.|++++|.+.. .+..+..+. +|++|++++|.++. +...+..+ ++|+.|++++|.++. +
T Consensus 78 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 78 TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred HhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 344555555555555442 122222222 25555555555441 12233334 455555555555441 1
Q ss_pred ChhHhhcCCCCcEEEccCCcCc-----ccCccccCCCCCcEEEccCCcCCC-----ChhhhhCCCCCCeeeccccccccc
Q 023495 73 PDTIGFELINLKTLSINCNKIV-----ILPQSLTHLTSLRVLDARLNCLKS-----LPEDLENLINLEVLNISQNFQYLE 142 (281)
Q Consensus 73 ~~~~~~~l~~L~~L~l~~~~l~-----~l~~~~~~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~L~l~~n~~~~~ 142 (281)
... +..+.+|++|++++|.+. .++..+..+++|+.|++++|.++. +...+..+++|++|++++| ....
T Consensus 158 ~~~-~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~ 235 (319)
T cd00116 158 AKA-LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN-NLTD 235 (319)
T ss_pred HHH-HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC-cCch
Confidence 111 113445555555555444 122223334455555555555441 1222444455555555555 1111
Q ss_pred CCCcccc-----CCCcccEEEcCCCCCC-----CCChhhhcCCCCCEEEccCCCCCCCCHHHH
Q 023495 143 TLPYSIG-----LLMSLVELDVSYNKIT-----TLPDSIGCLRKLQKLSLEGNPLVSPPMDVV 195 (281)
Q Consensus 143 ~~~~~~~-----~~~~L~~L~l~~n~i~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 195 (281)
.....+. ..+.|+.|++++|.++ .+...+..+++|+.+++++|.+...+...+
T Consensus 236 ~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~ 298 (319)
T cd00116 236 AGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLL 298 (319)
T ss_pred HHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHH
Confidence 0111111 1245555555555553 122333444555555555555554443333
No 21
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.54 E-value=8.2e-14 Score=137.60 Aligned_cols=122 Identities=30% Similarity=0.432 Sum_probs=61.1
Q ss_pred CCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCc-CcccChhHhhcCCCCcEEEccC
Q 023495 12 NVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNK-LRQLPDTIGFELINLKTLSINC 90 (281)
Q Consensus 12 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~ 90 (281)
+|+.|.+.++.+..+|..| ...+|+.|++.++.+..++.++..+++|+.|+++++. +..+|. +. .+++|++|++++
T Consensus 590 ~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls-~l~~Le~L~L~~ 666 (1153)
T PLN03210 590 KLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LS-MATNLETLKLSD 666 (1153)
T ss_pred ccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cc-cCCcccEEEecC
Confidence 3444444444444444444 3455566666666555555555555666666665542 334443 22 455566666655
Q ss_pred Cc-CcccCccccCCCCCcEEEccCC-cCCCChhhhhCCCCCCeeecccc
Q 023495 91 NK-IVILPQSLTHLTSLRVLDARLN-CLKSLPEDLENLINLEVLNISQN 137 (281)
Q Consensus 91 ~~-l~~l~~~~~~l~~L~~L~l~~n-~l~~l~~~~~~l~~L~~L~l~~n 137 (281)
|. +..+|..+..+++|+.|++++| .++.+|..+ ++++|+.|++++|
T Consensus 667 c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc 714 (1153)
T PLN03210 667 CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGC 714 (1153)
T ss_pred CCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCC
Confidence 43 3355555555556666666554 233444332 3444444444443
No 22
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.54 E-value=1.2e-14 Score=128.26 Aligned_cols=185 Identities=39% Similarity=0.562 Sum_probs=162.8
Q ss_pred hccCCCcEEEccCCCCCccchhccCCC-CCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEE
Q 023495 8 ARLLNVVVLDVHSNQLKCLPNSIGCLS-KLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTL 86 (281)
Q Consensus 8 ~~~~~L~~L~l~~~~l~~l~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 86 (281)
...+.++.|++.+|+++.++....... +|+.|++++|.+..+|..+..+++|+.|+++.|++..++.... ..++|+.|
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~-~~~~L~~L 191 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLS-NLSNLNNL 191 (394)
T ss_pred hcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhh-hhhhhhhe
Confidence 345679999999999999988777774 9999999999999998888999999999999999999998875 68999999
Q ss_pred EccCCcCcccCccccCCCCCcEEEccCCcCCCChhhhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCCCC
Q 023495 87 SINCNKIVILPQSLTHLTSLRVLDARLNCLKSLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKITT 166 (281)
Q Consensus 87 ~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 166 (281)
++++|.+..+|.....+..|+++.+++|.+...+..+..+.++..+.+.+| .....+..+..+++++.|++++|.++.
T Consensus 192 ~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n--~~~~~~~~~~~l~~l~~L~~s~n~i~~ 269 (394)
T COG4886 192 DLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN--KLEDLPESIGNLSNLETLDLSNNQISS 269 (394)
T ss_pred eccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCc--eeeeccchhccccccceeccccccccc
Confidence 999999999988777777899999999987777778889999999998888 555557778889999999999999999
Q ss_pred CChhhhcCCCCCEEEccCCCCCCCCHHHHH
Q 023495 167 LPDSIGCLRKLQKLSLEGNPLVSPPMDVVE 196 (281)
Q Consensus 167 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 196 (281)
++. +....+++.|++++|.+...++....
T Consensus 270 i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~ 298 (394)
T COG4886 270 ISS-LGSLTNLRELDLSGNSLSNALPLIAL 298 (394)
T ss_pred ccc-ccccCccCEEeccCccccccchhhhc
Confidence 877 88999999999999999887666554
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.53 E-value=1.8e-14 Score=123.39 Aligned_cols=185 Identities=27% Similarity=0.306 Sum_probs=129.6
Q ss_pred HHhccCCCcEEEccCCCCC-----ccchhccCCCCCcEEEccCCCCCC-------cchhhhcCccCceeeccCCcCcccC
Q 023495 6 LTARLLNVVVLDVHSNQLK-----CLPNSIGCLSKLKVLDVSGNLLES-------LPKTIENCRSLEELNANFNKLRQLP 73 (281)
Q Consensus 6 ~~~~~~~L~~L~l~~~~l~-----~l~~~~~~l~~L~~L~L~~n~l~~-------l~~~~~~l~~L~~L~L~~n~l~~~~ 73 (281)
++..+..|++|+++++.++ .++..+...+.+++++++++.+.. ++..+..+++|+.|++++|.+....
T Consensus 18 ~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 97 (319)
T cd00116 18 LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG 97 (319)
T ss_pred HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence 4466777899999998875 345556677788899998887662 2355667888999999988886433
Q ss_pred hhHhhcCCC---CcEEEccCCcCc-----ccCccccCC-CCCcEEEccCCcCC-----CChhhhhCCCCCCeeecccccc
Q 023495 74 DTIGFELIN---LKTLSINCNKIV-----ILPQSLTHL-TSLRVLDARLNCLK-----SLPEDLENLINLEVLNISQNFQ 139 (281)
Q Consensus 74 ~~~~~~l~~---L~~L~l~~~~l~-----~l~~~~~~l-~~L~~L~l~~n~l~-----~l~~~~~~l~~L~~L~l~~n~~ 139 (281)
...+..+.. |++|++++|.+. .+...+..+ ++|+.|++++|.++ .+...+..+++|++|++++| .
T Consensus 98 ~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n-~ 176 (319)
T cd00116 98 CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN-G 176 (319)
T ss_pred HHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC-C
Confidence 333223444 999999888776 223345566 78899999998887 33445677788999999888 2
Q ss_pred ccc----CCCccccCCCcccEEEcCCCCCC-----CCChhhhcCCCCCEEEccCCCCCCCC
Q 023495 140 YLE----TLPYSIGLLMSLVELDVSYNKIT-----TLPDSIGCLRKLQKLSLEGNPLVSPP 191 (281)
Q Consensus 140 ~~~----~~~~~~~~~~~L~~L~l~~n~i~-----~~~~~~~~l~~L~~L~L~~n~l~~~~ 191 (281)
..+ .++..+...++|+.|++++|.+. .+...+..+++|+.|++++|.+.+..
T Consensus 177 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~ 237 (319)
T cd00116 177 IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAG 237 (319)
T ss_pred CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHH
Confidence 221 22333455678899999988876 23355667788999999998887643
No 24
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.47 E-value=6.7e-14 Score=108.11 Aligned_cols=126 Identities=28% Similarity=0.384 Sum_probs=51.1
Q ss_pred ccCCCcEEEccCCCCCccchhcc-CCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEE
Q 023495 9 RLLNVVVLDVHSNQLKCLPNSIG-CLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLS 87 (281)
Q Consensus 9 ~~~~L~~L~l~~~~l~~l~~~~~-~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 87 (281)
++.+++.|+|++|+|+.+. .++ .+.+|+.|++++|.|+.+. ++..++.|++|++++|.++.+...+...+++|++|+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 5567888999999888774 344 5788899999999988873 577888999999999999888766544688899999
Q ss_pred ccCCcCcccC--ccccCCCCCcEEEccCCcCCCChh----hhhCCCCCCeeeccc
Q 023495 88 INCNKIVILP--QSLTHLTSLRVLDARLNCLKSLPE----DLENLINLEVLNISQ 136 (281)
Q Consensus 88 l~~~~l~~l~--~~~~~l~~L~~L~l~~n~l~~l~~----~~~~l~~L~~L~l~~ 136 (281)
+++|.+..+. ..+..+++|+.|++.+|.+..-+. .+..+++|+.||-..
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 9998887543 346678888888888888774332 266777787777543
No 25
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.47 E-value=6.8e-13 Score=131.16 Aligned_cols=184 Identities=27% Similarity=0.371 Sum_probs=149.6
Q ss_pred CChhHHhccCCCcEEEccCCCCC-------ccchhccCCC-CCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccC
Q 023495 2 IPESLTARLLNVVVLDVHSNQLK-------CLPNSIGCLS-KLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLP 73 (281)
Q Consensus 2 ip~~~~~~~~~L~~L~l~~~~l~-------~l~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~ 73 (281)
+....|.+|++|+.|.+..+... .+|..+..++ +|+.|.+.++.++.+|..+ ...+|++|++.++.+..++
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~ 627 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLW 627 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccc
Confidence 45667899999999999766422 4566676664 5999999999999999887 5789999999999999998
Q ss_pred hhHhhcCCCCcEEEccCCc-CcccCccccCCCCCcEEEccCCc-CCCChhhhhCCCCCCeeecccccccccCCCccccCC
Q 023495 74 DTIGFELINLKTLSINCNK-IVILPQSLTHLTSLRVLDARLNC-LKSLPEDLENLINLEVLNISQNFQYLETLPYSIGLL 151 (281)
Q Consensus 74 ~~~~~~l~~L~~L~l~~~~-l~~l~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 151 (281)
.++. .+++|+.|+++++. +..+| .+..+++|+.|++++|. +..+|..+.++++|+.|++++| .....+|..+ ++
T Consensus 628 ~~~~-~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c-~~L~~Lp~~i-~l 703 (1153)
T PLN03210 628 DGVH-SLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC-ENLEILPTGI-NL 703 (1153)
T ss_pred cccc-cCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCC-CCcCccCCcC-CC
Confidence 8875 89999999998765 55666 47789999999999975 5689999999999999999998 5677777655 68
Q ss_pred CcccEEEcCCCCC-CCCChhhhcCCCCCEEEccCCCCCCCCHH
Q 023495 152 MSLVELDVSYNKI-TTLPDSIGCLRKLQKLSLEGNPLVSPPMD 193 (281)
Q Consensus 152 ~~L~~L~l~~n~i-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 193 (281)
++|+.|++++|.. ..+|.. ..+|+.|++++|.+..+|..
T Consensus 704 ~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~ 743 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSN 743 (1153)
T ss_pred CCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccccccc
Confidence 8999999999843 355543 45788899999988776643
No 26
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.42 E-value=3.6e-14 Score=115.37 Aligned_cols=179 Identities=27% Similarity=0.351 Sum_probs=137.0
Q ss_pred ccCCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCc----ch--------------------hhhcCccCceeec
Q 023495 9 RLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESL----PK--------------------TIENCRSLEELNA 64 (281)
Q Consensus 9 ~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l----~~--------------------~~~~l~~L~~L~L 64 (281)
-+++|+.+.++++.-.+|-+....-+.|+++......+... |. .+...+.|+++||
T Consensus 212 ~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDL 291 (490)
T KOG1259|consen 212 AFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDL 291 (490)
T ss_pred HhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhccc
Confidence 34566666677665544433333345677776665543311 21 1122356899999
Q ss_pred cCCcCcccChhHhhcCCCCcEEEccCCcCcccCccccCCCCCcEEEccCCcCCCChhhhhCCCCCCeeecccccccccCC
Q 023495 65 NFNKLRQLPDTIGFELINLKTLSINCNKIVILPQSLTHLTSLRVLDARLNCLKSLPEDLENLINLEVLNISQNFQYLETL 144 (281)
Q Consensus 65 ~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~ 144 (281)
++|.++.+..... -.|.++.|++++|++..+.. +..+++|+.||+++|.++++..+-..+.++++|.|++| .+..+
T Consensus 292 S~N~I~~iDESvK-L~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N--~iE~L 367 (490)
T KOG1259|consen 292 SGNLITQIDESVK-LAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN--KIETL 367 (490)
T ss_pred cccchhhhhhhhh-hccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh--hHhhh
Confidence 9999999988886 78999999999999987744 88899999999999999988888788889999999999 45444
Q ss_pred CccccCCCcccEEEcCCCCCCCCC--hhhhcCCCCCEEEccCCCCCCCCH
Q 023495 145 PYSIGLLMSLVELDVSYNKITTLP--DSIGCLRKLQKLSLEGNPLVSPPM 192 (281)
Q Consensus 145 ~~~~~~~~~L~~L~l~~n~i~~~~--~~~~~l~~L~~L~L~~n~l~~~~~ 192 (281)
. .++++-+|..||+++|+|..+. ..++++|.|+.+.|.+|++..++.
T Consensus 368 S-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 368 S-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred h-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 3 5777888999999999998653 678999999999999999988754
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.40 E-value=1e-14 Score=127.36 Aligned_cols=179 Identities=32% Similarity=0.437 Sum_probs=149.0
Q ss_pred CCChhHHhccCCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcC
Q 023495 1 MIPESLTARLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFEL 80 (281)
Q Consensus 1 ~ip~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 80 (281)
++|..+ +.|..|+.+.+..|.+..+|..++++..|++++|+.|+++.+|..+..+ -|+.|.+++|+++.+|..+. ..
T Consensus 89 elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sNNkl~~lp~~ig-~~ 165 (722)
T KOG0532|consen 89 ELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSNNKLTSLPEEIG-LL 165 (722)
T ss_pred cCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcC-cceeEEEecCccccCCcccc-cc
Confidence 467765 6778888899999999999999999999999999999999998888666 58999999999999999988 88
Q ss_pred CCCcEEEccCCcCcccCccccCCCCCcEEEccCCcCCCChhhhhCCCCCCeeecccccccccCCCccccCCCcccEEEcC
Q 023495 81 INLKTLSINCNKIVILPQSLTHLTSLRVLDARLNCLKSLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVS 160 (281)
Q Consensus 81 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~ 160 (281)
..|..|+.+.|.+..+|..++.+.+|+.|.+..|++..+|..+.. -.|.+|+++.| .+..+|..|.+++.|++|-|.
T Consensus 166 ~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~-LpLi~lDfScN--kis~iPv~fr~m~~Lq~l~Le 242 (722)
T KOG0532|consen 166 PTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCS-LPLIRLDFSCN--KISYLPVDFRKMRHLQVLQLE 242 (722)
T ss_pred hhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhC-CceeeeecccC--ceeecchhhhhhhhheeeeec
Confidence 899999999999999999999999999999999999999988884 45888999998 788899999999999999999
Q ss_pred CCCCCCCChhhh---cCCCCCEEEccCC
Q 023495 161 YNKITTLPDSIG---CLRKLQKLSLEGN 185 (281)
Q Consensus 161 ~n~i~~~~~~~~---~l~~L~~L~L~~n 185 (281)
+|.+..=|..++ ...-.+.|+..-|
T Consensus 243 nNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 243 NNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred cCCCCCChHHHHhccceeeeeeecchhc
Confidence 998876554332 2222345555555
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.35 E-value=1.2e-12 Score=101.18 Aligned_cols=100 Identities=30% Similarity=0.302 Sum_probs=30.3
Q ss_pred CCCcEEEccCCcCcccCccccCCCCCcEEEccCCcCCCChhhh-hCCCCCCeeecccccccccCC--CccccCCCcccEE
Q 023495 81 INLKTLSINCNKIVILPQSLTHLTSLRVLDARLNCLKSLPEDL-ENLINLEVLNISQNFQYLETL--PYSIGLLMSLVEL 157 (281)
Q Consensus 81 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~-~~l~~L~~L~l~~n~~~~~~~--~~~~~~~~~L~~L 157 (281)
.+|+.|++++|.+..++ ++..++.|++|++++|.++.+...+ ..+++|+.|++++| .+..+ -..+..+++|+.|
T Consensus 42 ~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N--~I~~l~~l~~L~~l~~L~~L 118 (175)
T PF14580_consen 42 DKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN--KISDLNELEPLSSLPKLRVL 118 (175)
T ss_dssp TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS-----SCCCCGGGGG-TT--EE
T ss_pred cCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC--cCCChHHhHHHHcCCCccee
Confidence 34444444444444332 2333444444444444444443322 23444444444444 11111 1234455566666
Q ss_pred EcCCCCCCCCC----hhhhcCCCCCEEEcc
Q 023495 158 DVSYNKITTLP----DSIGCLRKLQKLSLE 183 (281)
Q Consensus 158 ~l~~n~i~~~~----~~~~~l~~L~~L~L~ 183 (281)
++.+|.+...+ ..+..+|+|+.||-.
T Consensus 119 ~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 119 SLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp E-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred eccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 66666555333 345666777666543
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.34 E-value=1.1e-12 Score=115.83 Aligned_cols=175 Identities=34% Similarity=0.483 Sum_probs=151.3
Q ss_pred EEEccCCCCCccchhccCCCCCcEEEccCCCCCCcchhhhcCc-cCceeeccCCcCcccChhHhhcCCCCcEEEccCCcC
Q 023495 15 VLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCR-SLEELNANFNKLRQLPDTIGFELINLKTLSINCNKI 93 (281)
Q Consensus 15 ~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l 93 (281)
.+++..+.+..-...+..++.++.|++.+|.++.+++...... +|+.|++++|.+..++..+. .+++|+.|+++.|.+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~-~l~~L~~L~l~~N~l 175 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLR-NLPNLKNLDLSFNDL 175 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhh-ccccccccccCCchh
Confidence 4777777764434445566889999999999999987777774 99999999999999976665 899999999999999
Q ss_pred cccCccccCCCCCcEEEccCCcCCCChhhhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCCCCCChhhhc
Q 023495 94 VILPQSLTHLTSLRVLDARLNCLKSLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKITTLPDSIGC 173 (281)
Q Consensus 94 ~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~ 173 (281)
..+|...+.++.|+.|++++|++..+|.......+|+++.+++| .....+..+..+.++..+.+.+|++..++..+..
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N--~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~ 253 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNN--SIIELLSSLSNLKNLSGLELSNNKLEDLPESIGN 253 (394)
T ss_pred hhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCC--cceecchhhhhcccccccccCCceeeeccchhcc
Confidence 99988777889999999999999999988778888999999999 3555666788888999999999999988888999
Q ss_pred CCCCCEEEccCCCCCCCCH
Q 023495 174 LRKLQKLSLEGNPLVSPPM 192 (281)
Q Consensus 174 l~~L~~L~L~~n~l~~~~~ 192 (281)
+++++.|++++|.++.++.
T Consensus 254 l~~l~~L~~s~n~i~~i~~ 272 (394)
T COG4886 254 LSNLETLDLSNNQISSISS 272 (394)
T ss_pred ccccceecccccccccccc
Confidence 9999999999999999876
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=7.3e-13 Score=112.55 Aligned_cols=184 Identities=24% Similarity=0.250 Sum_probs=121.4
Q ss_pred hccCCCcEEEccCCCCCccc--hhccCCCCCcEEEccCCCCCCc---chhhhcCccCceeeccCCcCcccC-hhHhhcCC
Q 023495 8 ARLLNVVVLDVHSNQLKCLP--NSIGCLSKLKVLDVSGNLLESL---PKTIENCRSLEELNANFNKLRQLP-DTIGFELI 81 (281)
Q Consensus 8 ~~~~~L~~L~l~~~~l~~l~--~~~~~l~~L~~L~L~~n~l~~l---~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~ 81 (281)
+++.+|+.+.|.++.+...+ .....|++++.|||++|-+... -.....+++|+.|+|+.|.+.... ......++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 46778888888888777655 3566788888888888866643 344567888888888888776322 22222567
Q ss_pred CCcEEEccCCcCc--ccCccccCCCCCcEEEccCCc-CCCChhhhhCCCCCCeeecccccccccCCCccccCCCcccEEE
Q 023495 82 NLKTLSINCNKIV--ILPQSLTHLTSLRVLDARLNC-LKSLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELD 158 (281)
Q Consensus 82 ~L~~L~l~~~~l~--~l~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 158 (281)
.|+.|.++.|+++ .+-.....+++|+.|++..|. +..-......++.|+.|+|++|+...-......+.++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 7888888888877 333345567788888888874 2211122344567888888888322222223466778888888
Q ss_pred cCCCCCCC--CChh-----hhcCCCCCEEEccCCCCCCCC
Q 023495 159 VSYNKITT--LPDS-----IGCLRKLQKLSLEGNPLVSPP 191 (281)
Q Consensus 159 l~~n~i~~--~~~~-----~~~l~~L~~L~L~~n~l~~~~ 191 (281)
++.|++.. +|+. ...+++|+.|++..|++...+
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~ 317 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWR 317 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCcccccc
Confidence 88888873 3443 456678888888888885543
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.24 E-value=1.4e-12 Score=106.28 Aligned_cols=133 Identities=24% Similarity=0.272 Sum_probs=87.1
Q ss_pred CCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEccCCcCcccCccccCCCCCcEEEcc
Q 023495 33 LSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINCNKIVILPQSLTHLTSLRVLDAR 112 (281)
Q Consensus 33 l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~ 112 (281)
+..|+.+||++|.|+.+..++.-.+.++.|+++.|.+..+.... .+++|+.||+++|.++.+..+-..+.++++|.++
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa--~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLA--ELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhh--hcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 44567777777777766666666677777777777776665522 5777777777777776665544566677777777
Q ss_pred CCcCCCChhhhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCCCCCC
Q 023495 113 LNCLKSLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKITTLP 168 (281)
Q Consensus 113 ~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~ 168 (281)
+|.+..+ ..++.+-+|..|++++|+...-.--..+++++.|+++.|.+|.+..++
T Consensus 361 ~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 361 QNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 7766665 345666677777777772211112235677777888888888777665
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=7e-12 Score=106.67 Aligned_cols=185 Identities=24% Similarity=0.197 Sum_probs=137.3
Q ss_pred HHhccCCCcEEEccCCCCCcc---chhccCCCCCcEEEccCCCCCCcchh--hhcCccCceeeccCCcCc--ccChhHhh
Q 023495 6 LTARLLNVVVLDVHSNQLKCL---PNSIGCLSKLKVLDVSGNLLESLPKT--IENCRSLEELNANFNKLR--QLPDTIGF 78 (281)
Q Consensus 6 ~~~~~~~L~~L~l~~~~l~~l---~~~~~~l~~L~~L~L~~n~l~~l~~~--~~~l~~L~~L~L~~n~l~--~~~~~~~~ 78 (281)
....|++++.|||++|=+... ......+++|+.|+++.|.+....++ -..+++|+.|.|+.|.++ .+...+.
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~- 219 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILL- 219 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHH-
Confidence 347899999999999976633 33457899999999999988643211 136789999999999988 3333333
Q ss_pred cCCCCcEEEccCCc-CcccCccccCCCCCcEEEccCCcCCCCh--hhhhCCCCCCeeecccccccccCCCcc-----ccC
Q 023495 79 ELINLKTLSINCNK-IVILPQSLTHLTSLRVLDARLNCLKSLP--EDLENLINLEVLNISQNFQYLETLPYS-----IGL 150 (281)
Q Consensus 79 ~l~~L~~L~l~~~~-l~~l~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~l~~L~~L~l~~n~~~~~~~~~~-----~~~ 150 (281)
.+|+|+.|++..|. +..-......+..|+.||+++|++...+ ...+.++.|..|+++.+....-..|.. ...
T Consensus 220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~ 299 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHT 299 (505)
T ss_pred hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcc
Confidence 79999999999885 3222233455678999999999998776 458889999999999882222222322 345
Q ss_pred CCcccEEEcCCCCCCCCC--hhhhcCCCCCEEEccCCCCCCCC
Q 023495 151 LMSLVELDVSYNKITTLP--DSIGCLRKLQKLSLEGNPLVSPP 191 (281)
Q Consensus 151 ~~~L~~L~l~~n~i~~~~--~~~~~l~~L~~L~L~~n~l~~~~ 191 (281)
+++|+.|++..|+|..++ ..+..+++|+.|.+..|.+....
T Consensus 300 f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~ 342 (505)
T KOG3207|consen 300 FPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKET 342 (505)
T ss_pred cccceeeecccCccccccccchhhccchhhhhhcccccccccc
Confidence 789999999999998776 45677788888888888886653
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.04 E-value=6e-11 Score=98.44 Aligned_cols=191 Identities=20% Similarity=0.257 Sum_probs=124.9
Q ss_pred HhccCCCcEEEccCCCCC----ccc-------hhccCCCCCcEEEccCCCCC-C-c---chhhhcCccCceeeccCCcCc
Q 023495 7 TARLLNVVVLDVHSNQLK----CLP-------NSIGCLSKLKVLDVSGNLLE-S-L---PKTIENCRSLEELNANFNKLR 70 (281)
Q Consensus 7 ~~~~~~L~~L~l~~~~l~----~l~-------~~~~~l~~L~~L~L~~n~l~-~-l---~~~~~~l~~L~~L~L~~n~l~ 70 (281)
+.+-+.|+..+++.--.. .+| .++-.+++|++|+|++|-+. . + -.-+..+..|++|.|.+|.+.
T Consensus 54 L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 54 LASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred HhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 355667777777764222 344 33456678888888888776 1 1 233456788888888888776
Q ss_pred ccChhH-------------hhcCCCCcEEEccCCcCc-----ccCccccCCCCCcEEEccCCcCC--C---ChhhhhCCC
Q 023495 71 QLPDTI-------------GFELINLKTLSINCNKIV-----ILPQSLTHLTSLRVLDARLNCLK--S---LPEDLENLI 127 (281)
Q Consensus 71 ~~~~~~-------------~~~l~~L~~L~l~~~~l~-----~l~~~~~~l~~L~~L~l~~n~l~--~---l~~~~~~l~ 127 (281)
...... ...-+.|+++...+|++. .+...+...+.|+.+.++.|.+. . +...+.+++
T Consensus 134 ~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~ 213 (382)
T KOG1909|consen 134 PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCP 213 (382)
T ss_pred hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCC
Confidence 322211 113467888888888876 23445677788888888888776 2 233578888
Q ss_pred CCCeeecccccccccC----CCccccCCCcccEEEcCCCCCC-----CCChhh-hcCCCCCEEEccCCCCCCCCHHHHHh
Q 023495 128 NLEVLNISQNFQYLET----LPYSIGLLMSLVELDVSYNKIT-----TLPDSI-GCLRKLQKLSLEGNPLVSPPMDVVEQ 197 (281)
Q Consensus 128 ~L~~L~l~~n~~~~~~----~~~~~~~~~~L~~L~l~~n~i~-----~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~ 197 (281)
+|+.|+|.+| .+... +...+..+++|+.|++++|.++ .+...+ ...++|..|.+.+|.|+.....++..
T Consensus 214 ~LevLdl~DN-tft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~ 292 (382)
T KOG1909|consen 214 HLEVLDLRDN-TFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAA 292 (382)
T ss_pred cceeeecccc-hhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHH
Confidence 8888888888 33222 2334566778888888888877 222333 34678888888888887766655543
Q ss_pred H
Q 023495 198 G 198 (281)
Q Consensus 198 ~ 198 (281)
.
T Consensus 293 ~ 293 (382)
T KOG1909|consen 293 C 293 (382)
T ss_pred H
Confidence 3
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.03 E-value=1.1e-10 Score=96.84 Aligned_cols=192 Identities=20% Similarity=0.230 Sum_probs=142.4
Q ss_pred hccCCCcEEEccCCCCC-----ccchhccCCCCCcEEEccCCCCC----Ccc-------hhhhcCccCceeeccCCcCcc
Q 023495 8 ARLLNVVVLDVHSNQLK-----CLPNSIGCLSKLKVLDVSGNLLE----SLP-------KTIENCRSLEELNANFNKLRQ 71 (281)
Q Consensus 8 ~~~~~L~~L~l~~~~l~-----~l~~~~~~l~~L~~L~L~~n~l~----~l~-------~~~~~l~~L~~L~L~~n~l~~ 71 (281)
-.+..++.++|+||.+. .+...+.+.+.|+..++++-.-. .+| +++..+++|++|+||+|.+..
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 35678999999999887 34455677889999999874222 344 345678899999999998761
Q ss_pred --cC--hhHhhcCCCCcEEEccCCcCccc--------------CccccCCCCCcEEEccCCcCCCC-----hhhhhCCCC
Q 023495 72 --LP--DTIGFELINLKTLSINCNKIVIL--------------PQSLTHLTSLRVLDARLNCLKSL-----PEDLENLIN 128 (281)
Q Consensus 72 --~~--~~~~~~l~~L~~L~l~~~~l~~l--------------~~~~~~l~~L~~L~l~~n~l~~l-----~~~~~~l~~ 128 (281)
++ ..+..++..|++|.+.+|++... ......-+.|+++..+.|++..- ...+...+.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT 186 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence 11 12234789999999999998721 11234567899999999998733 334778899
Q ss_pred CCeeeccccccccc---CCCccccCCCcccEEEcCCCCCC-----CCChhhhcCCCCCEEEccCCCCCCCCHHHHHhHH
Q 023495 129 LEVLNISQNFQYLE---TLPYSIGLLMSLVELDVSYNKIT-----TLPDSIGCLRKLQKLSLEGNPLVSPPMDVVEQGL 199 (281)
Q Consensus 129 L~~L~l~~n~~~~~---~~~~~~~~~~~L~~L~l~~n~i~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 199 (281)
|+.+.+..|..... .+...+..+++|+.|||.+|-++ .+...++..++|+.|++++|.++.-....+...+
T Consensus 187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 99999999822211 12345778999999999999887 3446778889999999999999998877665544
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.03 E-value=4.4e-10 Score=107.12 Aligned_cols=111 Identities=30% Similarity=0.360 Sum_probs=82.1
Q ss_pred CChhHHhccCCCcEEEccCC-CCCccchhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcC
Q 023495 2 IPESLTARLLNVVVLDVHSN-QLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFEL 80 (281)
Q Consensus 2 ip~~~~~~~~~L~~L~l~~~-~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 80 (281)
++..+|..++.|++|||++| .+.++|..++++-+|++|+++++.++.+|.++.++..|.+|++..+.-...++.+...+
T Consensus 562 is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L 641 (889)
T KOG4658|consen 562 ISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLEL 641 (889)
T ss_pred cCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhc
Confidence 56677888999999999977 47788999999999999999999999999999999999999998876544445555468
Q ss_pred CCCcEEEccCCcCc---ccCccccCCCCCcEEEcc
Q 023495 81 INLKTLSINCNKIV---ILPQSLTHLTSLRVLDAR 112 (281)
Q Consensus 81 ~~L~~L~l~~~~l~---~l~~~~~~l~~L~~L~l~ 112 (281)
.+|++|.+...... ..-..+..+.+|+.+...
T Consensus 642 ~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 642 QSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred ccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 89999988554322 111223445555555443
No 36
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.96 E-value=1.1e-10 Score=103.71 Aligned_cols=176 Identities=28% Similarity=0.413 Sum_probs=103.5
Q ss_pred cCCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEcc
Q 023495 10 LLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSIN 89 (281)
Q Consensus 10 ~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 89 (281)
+..++.+.++.|.+..+-..+..+.+|..|++.+|.|..+...+..+++|++|++++|.|+.+.... .++.|+.|++.
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~--~l~~L~~L~l~ 148 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLS--TLTLLKELNLS 148 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchh--hccchhhheec
Confidence 4455555566666665444455666667777777766666443556667777777777666665443 45556777777
Q ss_pred CCcCcccCccccCCCCCcEEEccCCcCCCChhh-hhCCCCCCeeecccccccccCCC---------------------cc
Q 023495 90 CNKIVILPQSLTHLTSLRVLDARLNCLKSLPED-LENLINLEVLNISQNFQYLETLP---------------------YS 147 (281)
Q Consensus 90 ~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~n~~~~~~~~---------------------~~ 147 (281)
+|.++.+. .+..++.|+.+++++|.+..+... ...+.+++.+.+.+| .+..+. ..
T Consensus 149 ~N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n--~i~~i~~~~~~~~l~~~~l~~n~i~~~~~ 225 (414)
T KOG0531|consen 149 GNLISDIS-GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGN--SIREIEGLDLLKKLVLLSLLDNKISKLEG 225 (414)
T ss_pred cCcchhcc-CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCC--chhcccchHHHHHHHHhhcccccceeccC
Confidence 77666553 234466666777777666655442 355566666666665 111110 00
Q ss_pred ccCCCc--ccEEEcCCCCCCCCChhhhcCCCCCEEEccCCCCCCC
Q 023495 148 IGLLMS--LVELDVSYNKITTLPDSIGCLRKLQKLSLEGNPLVSP 190 (281)
Q Consensus 148 ~~~~~~--L~~L~l~~n~i~~~~~~~~~l~~L~~L~L~~n~l~~~ 190 (281)
+..+.. |+.+.+++|++..++..+..+..+..+++..|.+...
T Consensus 226 l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~ 270 (414)
T KOG0531|consen 226 LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNL 270 (414)
T ss_pred cccchhHHHHHHhcccCccccccccccccccccccchhhcccccc
Confidence 111122 6677777777776655566667777777777766554
No 37
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.94 E-value=7.1e-12 Score=112.75 Aligned_cols=129 Identities=33% Similarity=0.484 Sum_probs=85.2
Q ss_pred cCceeeccCCcCcccChhHhhcCCCCcEEEccCCcCcccCccccCCCCCcEEEccCCcCCCChhhhhCCCCCCeeecccc
Q 023495 58 SLEELNANFNKLRQLPDTIGFELINLKTLSINCNKIVILPQSLTHLTSLRVLDARLNCLKSLPEDLENLINLEVLNISQN 137 (281)
Q Consensus 58 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n 137 (281)
.|.+.+.+.|.+..+...+. -++.++.|++++|.++... .+..++.|++||+++|.+..+|..-..-.+|+.|.+++|
T Consensus 165 ~L~~a~fsyN~L~~mD~SLq-ll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN 242 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQ-LLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNN 242 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHH-HHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeeccc
Confidence 45666666777766666665 6677778888887777554 667777788888888877777653222223777777777
Q ss_pred cccccCCCccccCCCcccEEEcCCCCCCCCC--hhhhcCCCCCEEEccCCCCCCCC
Q 023495 138 FQYLETLPYSIGLLMSLVELDVSYNKITTLP--DSIGCLRKLQKLSLEGNPLVSPP 191 (281)
Q Consensus 138 ~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~--~~~~~l~~L~~L~L~~n~l~~~~ 191 (281)
....+ ..+.++.+|+.||++.|-+.... ..+..+..|+.|.|.||++..-+
T Consensus 243 --~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 243 --ALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred --HHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 22222 24567777778888877666332 33566677777888888776544
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.93 E-value=7.9e-10 Score=70.52 Aligned_cols=59 Identities=36% Similarity=0.514 Sum_probs=40.2
Q ss_pred CCCcEEEccCCCCCccc-hhccCCCCCcEEEccCCCCCCc-chhhhcCccCceeeccCCcC
Q 023495 11 LNVVVLDVHSNQLKCLP-NSIGCLSKLKVLDVSGNLLESL-PKTIENCRSLEELNANFNKL 69 (281)
Q Consensus 11 ~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~l 69 (281)
++|++|++++|+++.+| ..|.++++|++|++++|.++.+ +..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 35677777777777775 3566677777777777777766 34567777777777777653
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.92 E-value=1.1e-10 Score=103.59 Aligned_cols=173 Identities=29% Similarity=0.406 Sum_probs=122.7
Q ss_pred CCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEccCC
Q 023495 12 NVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINCN 91 (281)
Q Consensus 12 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~ 91 (281)
.++.++...+.+.........+..++.+.+..|.+..+-..+..+.+|..|++.+|.+..+...+. .+++|++|++++|
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~-~~~~L~~L~ls~N 128 (414)
T KOG0531|consen 50 DLEEIDLIFNLDGSDEDLVESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLS-SLVNLQVLDLSFN 128 (414)
T ss_pred hhhhhcchhccccchhhhHHHhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchh-hhhcchheecccc
Confidence 344444444433322111135567777888888888754557888999999999999998887443 7999999999999
Q ss_pred cCcccCccccCCCCCcEEEccCCcCCCChhhhhCCCCCCeeecccccccccCCCcc-ccCCCcccEEEcCCCCCCCCChh
Q 023495 92 KIVILPQSLTHLTSLRVLDARLNCLKSLPEDLENLINLEVLNISQNFQYLETLPYS-IGLLMSLVELDVSYNKITTLPDS 170 (281)
Q Consensus 92 ~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~~~L~~L~l~~n~i~~~~~~ 170 (281)
.|..+ ..+..++.|+.|++.+|.+..+. .+..++.|+.+++++| .+..+... ...+.+++.+++.+|.+..+. .
T Consensus 129 ~I~~i-~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~~n--~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~ 203 (414)
T KOG0531|consen 129 KITKL-EGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLSYN--RIVDIENDELSELISLEELDLGGNSIREIE-G 203 (414)
T ss_pred ccccc-cchhhccchhhheeccCcchhcc-CCccchhhhcccCCcc--hhhhhhhhhhhhccchHHHhccCCchhccc-c
Confidence 99977 35667778999999999999874 4555899999999999 34444332 577889999999999887553 2
Q ss_pred hhcCCCCCEEEccCCCCCCC
Q 023495 171 IGCLRKLQKLSLEGNPLVSP 190 (281)
Q Consensus 171 ~~~l~~L~~L~L~~n~l~~~ 190 (281)
+..+..+..+++..|.++.+
T Consensus 204 ~~~~~~l~~~~l~~n~i~~~ 223 (414)
T KOG0531|consen 204 LDLLKKLVLLSLLDNKISKL 223 (414)
T ss_pred hHHHHHHHHhhcccccceec
Confidence 23333344445555555443
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.91 E-value=2.1e-09 Score=102.60 Aligned_cols=180 Identities=29% Similarity=0.343 Sum_probs=114.0
Q ss_pred ccCCCcEEEccCCC--CCccchh-ccCCCCCcEEEccCC-CCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCc
Q 023495 9 RLLNVVVLDVHSNQ--LKCLPNS-IGCLSKLKVLDVSGN-LLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLK 84 (281)
Q Consensus 9 ~~~~L~~L~l~~~~--l~~l~~~-~~~l~~L~~L~L~~n-~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 84 (281)
++++|+.|-+.+|. +..++.. |..++.|++|||++| .+.++|..++.+.+|++|+++++.+..+|.++. ++..|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~-~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLG-NLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHH-HHHhhh
Confidence 45577777777775 5555443 566888888888876 566778888888888888888888888888876 777888
Q ss_pred EEEccCCcCc-ccCccccCCCCCcEEEccCCcCC---CChhhhhCCCCCCeeecccccccccCCCccccCCCccc----E
Q 023495 85 TLSINCNKIV-ILPQSLTHLTSLRVLDARLNCLK---SLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLV----E 156 (281)
Q Consensus 85 ~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~n~l~---~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~----~ 156 (281)
+|++..+.-. .+|.....+.+|++|.+...... ..-..+..+.+|+.+..... .. .+...+..+..|. .
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~--s~-~~~e~l~~~~~L~~~~~~ 698 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS--SV-LLLEDLLGMTRLRSLLQS 698 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc--hh-HhHhhhhhhHHHHHHhHh
Confidence 8888766543 34444555788888877654322 11122444455555444322 11 1112222333333 3
Q ss_pred EEcCCCCCCCCChhhhcCCCCCEEEccCCCCCCCCH
Q 023495 157 LDVSYNKITTLPDSIGCLRKLQKLSLEGNPLVSPPM 192 (281)
Q Consensus 157 L~l~~n~i~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 192 (281)
+.+.++.....+..+..+.+|+.|.+.++.+.....
T Consensus 699 l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~ 734 (889)
T KOG4658|consen 699 LSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVI 734 (889)
T ss_pred hhhcccccceeecccccccCcceEEEEcCCCchhhc
Confidence 333344444566778899999999999999876544
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.89 E-value=1e-09 Score=70.00 Aligned_cols=58 Identities=33% Similarity=0.469 Sum_probs=33.2
Q ss_pred CCcEEEccCCCCCCcc-hhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEccCCc
Q 023495 35 KLKVLDVSGNLLESLP-KTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINCNK 92 (281)
Q Consensus 35 ~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~ 92 (281)
+|++|++++|+++.+| ..|..+++|++|++++|.++.+++..+..+++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4556666666665553 345555666666666666655555555555555555555554
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.83 E-value=1.1e-08 Score=95.32 Aligned_cols=103 Identities=23% Similarity=0.474 Sum_probs=65.9
Q ss_pred CcEEEccCCcCc-ccCccccCCCCCcEEEccCCcCC-CChhhhhCCCCCCeeecccccccccCCCccccCCCcccEEEcC
Q 023495 83 LKTLSINCNKIV-ILPQSLTHLTSLRVLDARLNCLK-SLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVS 160 (281)
Q Consensus 83 L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~ 160 (281)
++.|++++|.+. .+|..+..+++|+.|++++|.+. .+|..++.+++|+.|++++| ...+.+|..++.+++|+.|+|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N-~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN-SFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCC-CCCCCCchHHhcCCCCCEEECc
Confidence 556666666665 55666666667777777776665 56666666777777777766 4555666666666677777777
Q ss_pred CCCCC-CCChhhhcC-CCCCEEEccCCC
Q 023495 161 YNKIT-TLPDSIGCL-RKLQKLSLEGNP 186 (281)
Q Consensus 161 ~n~i~-~~~~~~~~l-~~L~~L~L~~n~ 186 (281)
+|.++ .+|..+... .++..+++.+|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 77666 556555442 345566666654
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1.4e-09 Score=88.77 Aligned_cols=174 Identities=18% Similarity=0.124 Sum_probs=120.4
Q ss_pred CCcEEEccCCCCC--ccchhccCCCCCcEEEccCCCCC-CcchhhhcCccCceeeccCCc-CcccC-hhHhhcCCCCcEE
Q 023495 12 NVVVLDVHSNQLK--CLPNSIGCLSKLKVLDVSGNLLE-SLPKTIENCRSLEELNANFNK-LRQLP-DTIGFELINLKTL 86 (281)
Q Consensus 12 ~L~~L~l~~~~l~--~l~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L 86 (281)
+|++|||+...|+ .+..-++.|.+|+.|.+.++++. .+...+..-.+|+.|+++.+. ++... ..++..+..|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 5888889888877 44555778888899999988887 345567777888999988763 33221 2234478888888
Q ss_pred EccCCcCc--ccCccccC-CCCCcEEEccCCcCC----CChhhhhCCCCCCeeecccccccccCCCccccCCCcccEEEc
Q 023495 87 SINCNKIV--ILPQSLTH-LTSLRVLDARLNCLK----SLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDV 159 (281)
Q Consensus 87 ~l~~~~l~--~l~~~~~~-l~~L~~L~l~~n~l~----~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l 159 (281)
+++.+.+. .+...+.+ -++|..|+++++... ++..-...+++|..|+|++|.......-..+.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 88888765 11122222 257888888887533 343345778999999999885444444556778889999999
Q ss_pred CCCCC-C-CCChhhhcCCCCCEEEccCC
Q 023495 160 SYNKI-T-TLPDSIGCLRKLQKLSLEGN 185 (281)
Q Consensus 160 ~~n~i-~-~~~~~~~~l~~L~~L~L~~n 185 (281)
+.|-. . +.--.+...++|.+|++.++
T Consensus 346 sRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcCCChHHeeeeccCcceEEEEeccc
Confidence 88832 1 11124678889999998876
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=4.3e-09 Score=85.98 Aligned_cols=205 Identities=21% Similarity=0.296 Sum_probs=114.8
Q ss_pred CcEEEccCCCCCccch--hc-cCCCCCcEEEccCCCCCC---cchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEE
Q 023495 13 VVVLDVHSNQLKCLPN--SI-GCLSKLKVLDVSGNLLES---LPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTL 86 (281)
Q Consensus 13 L~~L~l~~~~l~~l~~--~~-~~l~~L~~L~L~~n~l~~---l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 86 (281)
+..+.+.++.|....+ .| ..+..++.+||.+|.|+. +...+.++|.|++|+++.|.+.......-....+|++|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 3356666766665432 22 345667788888887773 34455678888888888887663222221256678888
Q ss_pred EccCCcCc--ccCccccCCCCCcEEEccCCcCCCCh--hh-h---------------------------hCCCCCCeeec
Q 023495 87 SINCNKIV--ILPQSLTHLTSLRVLDARLNCLKSLP--ED-L---------------------------ENLINLEVLNI 134 (281)
Q Consensus 87 ~l~~~~l~--~l~~~~~~l~~L~~L~l~~n~l~~l~--~~-~---------------------------~~l~~L~~L~l 134 (281)
.+.+..+. .....+..++.++.|+++.|++..+- +. . ..++++..+.+
T Consensus 127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v 206 (418)
T KOG2982|consen 127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFV 206 (418)
T ss_pred EEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheee
Confidence 88777665 33444566777777777777443110 00 0 11234444444
Q ss_pred ccccccccCCCccccCCCcccEEEcCCCCCCCCC--hhhhcCCCCCEEEccCCCCCCCCHHHHHhHHHHHHHHHHhhhcC
Q 023495 135 SQNFQYLETLPYSIGLLMSLVELDVSYNKITTLP--DSIGCLRKLQKLSLEGNPLVSPPMDVVEQGLSAVKGYLSEKMNN 212 (281)
Q Consensus 135 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (281)
..|+.........+...+.+..|+|+.++|..+. +.+.+++.|..|.++++++...-
T Consensus 207 ~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l--------------------- 265 (418)
T KOG2982|consen 207 CEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL--------------------- 265 (418)
T ss_pred ecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc---------------------
Confidence 4442112222223334445556666666666442 45566666666666666664321
Q ss_pred CCCCCCCcchhhchhhccccccccccC
Q 023495 213 DHKSPKKKSWVGKLVKYGTFNGALRNH 239 (281)
Q Consensus 213 ~~~~~~~~~~~~~l~~~~~~~~~~~~~ 239 (281)
.......-.++++++++.++|+....
T Consensus 266 -~~~err~llIaRL~~v~vLNGskIss 291 (418)
T KOG2982|consen 266 -RGGERRFLLIARLTKVQVLNGSKISS 291 (418)
T ss_pred -cCCcceEEEEeeccceEEecCcccch
Confidence 11223455678999999999975443
No 45
>PLN03150 hypothetical protein; Provisional
Probab=98.73 E-value=4.2e-08 Score=91.39 Aligned_cols=102 Identities=28% Similarity=0.489 Sum_probs=88.2
Q ss_pred CCcEEEccCCCCC-CcchhhhcCccCceeeccCCcCc-ccChhHhhcCCCCcEEEccCCcCc-ccCccccCCCCCcEEEc
Q 023495 35 KLKVLDVSGNLLE-SLPKTIENCRSLEELNANFNKLR-QLPDTIGFELINLKTLSINCNKIV-ILPQSLTHLTSLRVLDA 111 (281)
Q Consensus 35 ~L~~L~L~~n~l~-~l~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l 111 (281)
.++.|+|++|.+. .+|..+..+++|+.|+|++|.+. .+|..+. .+++|+.|++++|.+. .+|..+..+++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~-~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHh-CCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 3788999999998 56888999999999999999997 6666665 8999999999999988 78889999999999999
Q ss_pred cCCcCC-CChhhhhCC-CCCCeeecccc
Q 023495 112 RLNCLK-SLPEDLENL-INLEVLNISQN 137 (281)
Q Consensus 112 ~~n~l~-~l~~~~~~l-~~L~~L~l~~n 137 (281)
++|.++ .+|..+... .++..+++.+|
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCC
Confidence 999988 788877653 46778888888
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=6.8e-10 Score=90.60 Aligned_cols=81 Identities=22% Similarity=0.272 Sum_probs=35.0
Q ss_pred CcEEEccCCCCC--CcchhhhcCccCceeeccCCcCcc-cChhHhhcCCCCcEEEccCCc-Cccc--CccccCCCCCcEE
Q 023495 36 LKVLDVSGNLLE--SLPKTIENCRSLEELNANFNKLRQ-LPDTIGFELINLKTLSINCNK-IVIL--PQSLTHLTSLRVL 109 (281)
Q Consensus 36 L~~L~L~~n~l~--~l~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~~~-l~~l--~~~~~~l~~L~~L 109 (281)
||++||+...|+ .+...+..|.+|+.|.+.++++.. +-..+ ++-.+|+.|+++.+. ++.. .-.+.+++.|..|
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i-AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTI-AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHH-hccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 455555555444 223334445555555555554441 11112 134445555554332 3211 1124445555555
Q ss_pred EccCCcCC
Q 023495 110 DARLNCLK 117 (281)
Q Consensus 110 ~l~~n~l~ 117 (281)
++++|.+.
T Consensus 266 NlsWc~l~ 273 (419)
T KOG2120|consen 266 NLSWCFLF 273 (419)
T ss_pred CchHhhcc
Confidence 55555443
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.69 E-value=2.3e-09 Score=77.86 Aligned_cols=111 Identities=23% Similarity=0.368 Sum_probs=83.5
Q ss_pred CCcEEEccCCCCCccchh---ccCCCCCcEEEccCCCCCCcchhhh-cCccCceeeccCCcCcccChhHhhcCCCCcEEE
Q 023495 12 NVVVLDVHSNQLKCLPNS---IGCLSKLKVLDVSGNLLESLPKTIE-NCRSLEELNANFNKLRQLPDTIGFELINLKTLS 87 (281)
Q Consensus 12 ~L~~L~l~~~~l~~l~~~---~~~l~~L~~L~L~~n~l~~l~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 87 (281)
.+..++|+.|++-.+++. +.....|+..+|++|.+..+|..|. .++.++.+++++|.+..+|.++. .++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~A-am~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELA-AMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHh-hhHHhhhcc
Confidence 455678888877766554 3445667777888888888877664 34578888888888888888854 788888888
Q ss_pred ccCCcCcccCccccCCCCCcEEEccCCcCCCChhhh
Q 023495 88 INCNKIVILPQSLTHLTSLRVLDARLNCLKSLPEDL 123 (281)
Q Consensus 88 l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~ 123 (281)
++.|.+...|..+..+.++-.|+..+|.+.+++-++
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl 142 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDL 142 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCCccccCcHHH
Confidence 888888877777777788888888888877777663
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.64 E-value=6e-09 Score=75.71 Aligned_cols=120 Identities=20% Similarity=0.305 Sum_probs=86.4
Q ss_pred CcEEEccCCcCcccCcc---ccCCCCCcEEEccCCcCCCChhhhhC-CCCCCeeecccccccccCCCccccCCCcccEEE
Q 023495 83 LKTLSINCNKIVILPQS---LTHLTSLRVLDARLNCLKSLPEDLEN-LINLEVLNISQNFQYLETLPYSIGLLMSLVELD 158 (281)
Q Consensus 83 L~~L~l~~~~l~~l~~~---~~~l~~L~~L~l~~n~l~~l~~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 158 (281)
+..++++.+.+-.++.. +.....|...++++|.++.+|..+.. .+-++++++++| .+.++|+.+..++.|+.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n--eisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN--EISDVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh--hhhhchHHHhhhHHhhhcc
Confidence 34445555554444333 33345566677888888877776544 347788888888 6777888888888888888
Q ss_pred cCCCCCCCCChhhhcCCCCCEEEccCCCCCCCCHHHHHhHHHHHHH
Q 023495 159 VSYNKITTLPDSIGCLRKLQKLSLEGNPLVSPPMDVVEQGLSAVKG 204 (281)
Q Consensus 159 l~~n~i~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 204 (281)
++.|.+...|..+..+.++-.|+..+|.+..++.+.+....+.+..
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al~~ 152 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPALIK 152 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCCccccCcHHHhccccHHHHH
Confidence 8888888888888778889999999999988888866655554443
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.63 E-value=6e-08 Score=75.07 Aligned_cols=125 Identities=23% Similarity=0.248 Sum_probs=90.8
Q ss_pred CCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEccCC
Q 023495 12 NVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINCN 91 (281)
Q Consensus 12 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~ 91 (281)
+=+.+++.+.++..+..--.-+.+...+||++|.+..+ +.|..++.|.+|.+++|+|+.+.+.+..-+++|++|.+.+|
T Consensus 20 ~e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 20 RERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred cccccccccccccchhhccccccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 45678888887765533111234567889999988766 45677888999999999999888888777888999999888
Q ss_pred cCcccCc--cccCCCCCcEEEccCCcCCCChhh----hhCCCCCCeeecccc
Q 023495 92 KIVILPQ--SLTHLTSLRVLDARLNCLKSLPED----LENLINLEVLNISQN 137 (281)
Q Consensus 92 ~l~~l~~--~~~~l~~L~~L~l~~n~l~~l~~~----~~~l~~L~~L~l~~n 137 (281)
.+..+.. .+..++.|++|.+-+|.+++-... +..+++|++|+.++-
T Consensus 99 si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 99 SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred chhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 8886533 366778888888888887744322 556677777776654
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.54 E-value=1.7e-08 Score=91.52 Aligned_cols=157 Identities=29% Similarity=0.355 Sum_probs=112.1
Q ss_pred chhccCCCCCcEEEccCCCCCCcchhhhcC-ccCceeeccCCcCc-----------ccChhHhhcCCCCcEEEccCCcCc
Q 023495 27 PNSIGCLSKLKVLDVSGNLLESLPKTIENC-RSLEELNANFNKLR-----------QLPDTIGFELINLKTLSINCNKIV 94 (281)
Q Consensus 27 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l-~~L~~L~L~~n~l~-----------~~~~~~~~~l~~L~~L~l~~~~l~ 94 (281)
|-.+..+..|+.|.+.++.+... .++..+ .+|++|.-. |.++ .+.... .+..|.+.+.+.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~-~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA-KGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNSP--VWNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhhh-hhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccch--hhhhHhhhhcchhhHH
Confidence 34455667788888888877643 222221 123333221 1111 111111 2446778888999998
Q ss_pred ccCccccCCCCCcEEEccCCcCCCChhhhhCCCCCCeeecccccccccCCCcc-ccCCCcccEEEcCCCCCCCCChhhhc
Q 023495 95 ILPQSLTHLTSLRVLDARLNCLKSLPEDLENLINLEVLNISQNFQYLETLPYS-IGLLMSLVELDVSYNKITTLPDSIGC 173 (281)
Q Consensus 95 ~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~~ 173 (281)
.+...+.-++.++.|+++.|+++.+. .+..+++|++|+++.| ....+|.- ...|. |..|.+++|.++++. .+.+
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN--~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~-gie~ 252 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN--CLRHVPQLSMVGCK-LQLLNLRNNALTTLR-GIEN 252 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc--hhccccccchhhhh-heeeeecccHHHhhh-hHHh
Confidence 88888888999999999999999885 8899999999999999 55556642 33454 999999999999875 4789
Q ss_pred CCCCCEEEccCCCCCCCCH
Q 023495 174 LRKLQKLSLEGNPLVSPPM 192 (281)
Q Consensus 174 l~~L~~L~L~~n~l~~~~~ 192 (281)
+.+|..||+++|-|.+-..
T Consensus 253 LksL~~LDlsyNll~~hse 271 (1096)
T KOG1859|consen 253 LKSLYGLDLSYNLLSEHSE 271 (1096)
T ss_pred hhhhhccchhHhhhhcchh
Confidence 9999999999999877543
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.52 E-value=1.8e-07 Score=55.06 Aligned_cols=39 Identities=31% Similarity=0.498 Sum_probs=26.0
Q ss_pred CCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCc
Q 023495 11 LNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESL 49 (281)
Q Consensus 11 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l 49 (281)
++|++|++++|+|+.+|+.++++++|++|++++|+++.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 356777777777777766677777777777777777655
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.40 E-value=4.2e-07 Score=53.43 Aligned_cols=41 Identities=32% Similarity=0.489 Sum_probs=30.2
Q ss_pred CCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccCh
Q 023495 34 SKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPD 74 (281)
Q Consensus 34 ~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~ 74 (281)
++|++|++++|+|+.+|+.+.++++|++|++++|.++.+++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 46788888888888887778888888888888888776543
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.30 E-value=3.1e-06 Score=73.65 Aligned_cols=131 Identities=18% Similarity=0.251 Sum_probs=75.9
Q ss_pred hccCCCcEEEccCCCCCccchhccCCCCCcEEEccCC-CCCCcchhhhcCccCceeeccCC-cCcccChhHhhcCCCCcE
Q 023495 8 ARLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGN-LLESLPKTIENCRSLEELNANFN-KLRQLPDTIGFELINLKT 85 (281)
Q Consensus 8 ~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 85 (281)
..|++++.|++++|.++.+|. + -++|+.|.++++ .++.+|..+. .+|++|++++| .+..+|. +|+.
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~-------sLe~ 116 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE-------SVRS 116 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc-------ccce
Confidence 347888889999888888872 2 245888888774 5666666553 57888888887 5655553 4666
Q ss_pred EEccCCcCc---ccCccccCCCCCcEEEccCCcCC---CChhhhhCCCCCCeeecccccccccCCCccccCCCcccEEEc
Q 023495 86 LSINCNKIV---ILPQSLTHLTSLRVLDARLNCLK---SLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDV 159 (281)
Q Consensus 86 L~l~~~~l~---~l~~~~~~l~~L~~L~l~~n~l~---~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l 159 (281)
|++..+... .+|. +|+.|.+.+++-. .++.. -.++|++|.+++| . ...+|..+. .+|+.|++
T Consensus 117 L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c-~-~i~LP~~LP--~SLk~L~l 184 (426)
T PRK15386 117 LEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGC-S-NIILPEKLP--ESLQSITL 184 (426)
T ss_pred EEeCCCCCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCC-C-cccCccccc--ccCcEEEe
Confidence 777655543 3333 3455555332211 11110 0146777777766 2 222333222 46677776
Q ss_pred CCC
Q 023495 160 SYN 162 (281)
Q Consensus 160 ~~n 162 (281)
+.+
T Consensus 185 s~n 187 (426)
T PRK15386 185 HIE 187 (426)
T ss_pred ccc
Confidence 654
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.27 E-value=7.1e-07 Score=83.46 Aligned_cols=132 Identities=23% Similarity=0.257 Sum_probs=92.7
Q ss_pred ccCceeeccCCcCc--ccChhHhhcCCCCcEEEccCCcCc--ccCccccCCCCCcEEEccCCcCCCChhhhhCCCCCCee
Q 023495 57 RSLEELNANFNKLR--QLPDTIGFELINLKTLSINCNKIV--ILPQSLTHLTSLRVLDARLNCLKSLPEDLENLINLEVL 132 (281)
Q Consensus 57 ~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l~~~~l~--~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L 132 (281)
.+|++|++++...- .=+..++..+|+|++|.+.+-.+. .+.....++++|..||+++++++.+ .+++++++|++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 57999999875432 222345557899999999876654 3334456788999999999998887 678899999999
Q ss_pred eccccccccc-CCCccccCCCcccEEEcCCCCCCCCC-------hhhhcCCCCCEEEccCCCCCCC
Q 023495 133 NISQNFQYLE-TLPYSIGLLMSLVELDVSYNKITTLP-------DSIGCLRKLQKLSLEGNPLVSP 190 (281)
Q Consensus 133 ~l~~n~~~~~-~~~~~~~~~~~L~~L~l~~n~i~~~~-------~~~~~l~~L~~L~L~~n~l~~~ 190 (281)
.+.+- .... ..-..+.++++|+.||+|...-...+ +.-..+|.|+.||.+++.+...
T Consensus 201 ~mrnL-e~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 201 SMRNL-EFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred hccCC-CCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 88765 2211 22234677899999999987554333 2224578999999997766543
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.22 E-value=3.1e-06 Score=68.78 Aligned_cols=185 Identities=23% Similarity=0.256 Sum_probs=104.0
Q ss_pred ccCCCcEEEccCCCCCc-----cchhccCCCCCcEEEccCCCCC----Ccc-------hhhhcCccCceeeccCCcCc-c
Q 023495 9 RLLNVVVLDVHSNQLKC-----LPNSIGCLSKLKVLDVSGNLLE----SLP-------KTIENCRSLEELNANFNKLR-Q 71 (281)
Q Consensus 9 ~~~~L~~L~l~~~~l~~-----l~~~~~~l~~L~~L~L~~n~l~----~l~-------~~~~~l~~L~~L~L~~n~l~-~ 71 (281)
.+..++.++|+||-|.+ +...+.+-.+|+..+++.-... .++ +.+-+|++|+.++|++|.+. .
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 46788889999998772 2333455566777777653222 222 34456778888888877665 2
Q ss_pred cChh---HhhcCCCCcEEEccCCcCcccCc--------------cccCCCCCcEEEccCCcCCCChhh-----hhCCCCC
Q 023495 72 LPDT---IGFELINLKTLSINCNKIVILPQ--------------SLTHLTSLRVLDARLNCLKSLPED-----LENLINL 129 (281)
Q Consensus 72 ~~~~---~~~~l~~L~~L~l~~~~l~~l~~--------------~~~~l~~L~~L~l~~n~l~~l~~~-----~~~l~~L 129 (281)
.|+. ...+-+.|.+|.+++|++..+.. ....-+.|+++....|++...+.. +....+|
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL 187 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence 2221 22356677777777777652211 112345677777777776633321 3333567
Q ss_pred CeeecccccccccCC------CccccCCCcccEEEcCCCCCCCC-----ChhhhcCCCCCEEEccCCCCCCCCHHHH
Q 023495 130 EVLNISQNFQYLETL------PYSIGLLMSLVELDVSYNKITTL-----PDSIGCLRKLQKLSLEGNPLVSPPMDVV 195 (281)
Q Consensus 130 ~~L~l~~n~~~~~~~------~~~~~~~~~L~~L~l~~n~i~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 195 (281)
+++.+..| .+..- -..+..+.+|+.||+.+|-++.. ...++.-+.|+.|.+..|-++......+
T Consensus 188 k~vki~qN--gIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v 262 (388)
T COG5238 188 KEVKIQQN--GIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSV 262 (388)
T ss_pred eeEEeeec--CcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHH
Confidence 77777666 22211 01123456677777777766521 1233333456666777666666554433
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=3.3e-07 Score=75.16 Aligned_cols=157 Identities=20% Similarity=0.203 Sum_probs=101.6
Q ss_pred CcEEEccCCCCCCcc--hhh-hcCccCceeeccCCcCcc---cChhHhhcCCCCcEEEccCCcCcccCccc-cCCCCCcE
Q 023495 36 LKVLDVSGNLLESLP--KTI-ENCRSLEELNANFNKLRQ---LPDTIGFELINLKTLSINCNKIVILPQSL-THLTSLRV 108 (281)
Q Consensus 36 L~~L~L~~n~l~~l~--~~~-~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~l~~~~l~~l~~~~-~~l~~L~~ 108 (281)
+.-+.+-++.|.... ..| ..++.++.+||.+|.++. +.. +..++|.|++|++++|.+..--... ....+|+.
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~-ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGA-ILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHH-HHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 445666676666442 223 356789999999998873 333 3348999999999999987221222 35678999
Q ss_pred EEccCCcCC--CChhhhhCCCCCCeeecccccccccCCC-ccccCC-CcccEEEcCCCCCC---CCChhhhcCCCCCEEE
Q 023495 109 LDARLNCLK--SLPEDLENLINLEVLNISQNFQYLETLP-YSIGLL-MSLVELDVSYNKIT---TLPDSIGCLRKLQKLS 181 (281)
Q Consensus 109 L~l~~n~l~--~l~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~-~~L~~L~l~~n~i~---~~~~~~~~l~~L~~L~ 181 (281)
|-+.+..+. .....+..++.++.|.++.|....-.+. ...... +.+++|+..+|... .+.....-++++..+.
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~ 205 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVF 205 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhee
Confidence 999988776 5555678888999999998821111111 112222 35677777777543 2223334567788888
Q ss_pred ccCCCCCCCCHH
Q 023495 182 LEGNPLVSPPMD 193 (281)
Q Consensus 182 L~~n~l~~~~~~ 193 (281)
+..|++++....
T Consensus 206 v~e~PlK~~s~e 217 (418)
T KOG2982|consen 206 VCEGPLKTESSE 217 (418)
T ss_pred eecCcccchhhc
Confidence 888888776443
No 57
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.17 E-value=5.4e-06 Score=61.07 Aligned_cols=122 Identities=22% Similarity=0.324 Sum_probs=66.0
Q ss_pred CChhHHhccCCCcEEEccCCCCCccc-hhccCCCCCcEEEccCCCCCCcc-hhhhcCccCceeeccCCcCcccChhHhhc
Q 023495 2 IPESLTARLLNVVVLDVHSNQLKCLP-NSIGCLSKLKVLDVSGNLLESLP-KTIENCRSLEELNANFNKLRQLPDTIGFE 79 (281)
Q Consensus 2 ip~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 79 (281)
||...|.++.+|+.+.+.. .+..++ ..|.++.+|+.+.+.++ +..++ ..|..+.+|+.+.+.. .+..++...+..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 6788888998999999875 577774 45788888999988774 77664 4566777888888865 666677777756
Q ss_pred CCCCcEEEccCCcCcccCc-cccCCCCCcEEEccCCcCCCChh-hhhCCCCC
Q 023495 80 LINLKTLSINCNKIVILPQ-SLTHLTSLRVLDARLNCLKSLPE-DLENLINL 129 (281)
Q Consensus 80 l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L 129 (281)
+++|+.+.+..+ +..++. .+.++ +|+.+.+.. .+..++. .|.++++|
T Consensus 80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp -TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 888888888654 554433 46665 777777665 4444433 35555554
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.10 E-value=5.1e-06 Score=64.61 Aligned_cols=101 Identities=22% Similarity=0.254 Sum_probs=46.9
Q ss_pred CcEEEccCCcCcccCccccCCCCCcEEEccCCcCCCChhhhhC-CCCCCeeecccccccccCCC--ccccCCCcccEEEc
Q 023495 83 LKTLSINCNKIVILPQSLTHLTSLRVLDARLNCLKSLPEDLEN-LINLEVLNISQNFQYLETLP--YSIGLLMSLVELDV 159 (281)
Q Consensus 83 L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~-l~~L~~L~l~~n~~~~~~~~--~~~~~~~~L~~L~l 159 (281)
...+|++.|.+..+ ..+.+++.|++|.++.|+|+.+...+.. +++|++|.+.+| .+..+. ..+..|+.|+.|.+
T Consensus 44 ~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN--si~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN--SIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc--chhhhhhcchhccCCccceeee
Confidence 33344444443333 1233444444444444444444333322 233444444444 222211 12445556666666
Q ss_pred CCCCCCCCC----hhhhcCCCCCEEEccCCC
Q 023495 160 SYNKITTLP----DSIGCLRKLQKLSLEGNP 186 (281)
Q Consensus 160 ~~n~i~~~~----~~~~~l~~L~~L~L~~n~ 186 (281)
-+|.+..-. -.+..+++|+.||.++-.
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 666665322 345667777777766543
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.05 E-value=4.4e-06 Score=78.29 Aligned_cols=58 Identities=22% Similarity=0.334 Sum_probs=24.4
Q ss_pred CCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCccc--ChhHhhcCCCCcEEEccCC
Q 023495 32 CLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQL--PDTIGFELINLKTLSINCN 91 (281)
Q Consensus 32 ~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~~ 91 (281)
++++|..||+++++++.+ .++.++++|++|.+.+=.+..- -..+| .+.+|+.||+++.
T Consensus 171 sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRD 230 (699)
T ss_pred ccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHh-cccCCCeeecccc
Confidence 344444444444444444 3344444444444443333311 11233 4444555554443
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.04 E-value=2.7e-05 Score=67.91 Aligned_cols=135 Identities=24% Similarity=0.273 Sum_probs=89.3
Q ss_pred ccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCC-cCcccChhHhhcCCCCcEEEccCC-cCcccCccccCCCCCc
Q 023495 30 IGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFN-KLRQLPDTIGFELINLKTLSINCN-KIVILPQSLTHLTSLR 107 (281)
Q Consensus 30 ~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~~-~l~~l~~~~~~l~~L~ 107 (281)
+..+.+++.|++++|.++.+|. + -.+|++|.++++ .++.+|..+ .++|+.|++++| .+..+|. .|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccccccc------ccc
Confidence 3457889999999999998872 2 236999999874 556666544 257999999887 5655654 467
Q ss_pred EEEccCCcCC---CChhhhhCCCCCCeeecccccc-cccCCCccccCCCcccEEEcCCCCCCCCChhhhcCCCCCEEEcc
Q 023495 108 VLDARLNCLK---SLPEDLENLINLEVLNISQNFQ-YLETLPYSIGLLMSLVELDVSYNKITTLPDSIGCLRKLQKLSLE 183 (281)
Q Consensus 108 ~L~l~~n~l~---~l~~~~~~l~~L~~L~l~~n~~-~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~l~~L~~L~L~ 183 (281)
.|++..+... .+|. +|+.|.+.+++. ....++. .-.++|+.|++++|....+|+.+. .+|+.|+++
T Consensus 116 ~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 116 SLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNIILPEKLP--ESLQSITLH 185 (426)
T ss_pred eEEeCCCCCcccccCcc------hHhheecccccccccccccc--ccCCcccEEEecCCCcccCccccc--ccCcEEEec
Confidence 7777766543 4554 455666644311 1111121 123689999999998776665444 588888887
Q ss_pred CCC
Q 023495 184 GNP 186 (281)
Q Consensus 184 ~n~ 186 (281)
.+.
T Consensus 186 ~n~ 188 (426)
T PRK15386 186 IEQ 188 (426)
T ss_pred ccc
Confidence 763
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.73 E-value=0.0001 Score=54.11 Aligned_cols=103 Identities=19% Similarity=0.322 Sum_probs=50.0
Q ss_pred hccCCCCCcEEEccCCCCCCc-chhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEccCCcCcccCc-cccCCCCC
Q 023495 29 SIGCLSKLKVLDVSGNLLESL-PKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINCNKIVILPQ-SLTHLTSL 106 (281)
Q Consensus 29 ~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L 106 (281)
.|.++.+|+.+.+.. .+..+ ...|..+.+|+.+.+..+ +..++...+..+++++.+.+.. .+..++. .+..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 466667777777764 45555 344666667777777664 6666666666666677777754 3333332 35556677
Q ss_pred cEEEccCCcCCCChhh-hhCCCCCCeeeccc
Q 023495 107 RVLDARLNCLKSLPED-LENLINLEVLNISQ 136 (281)
Q Consensus 107 ~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~ 136 (281)
+.+++..+ +..++.. +.++ +++.+.+..
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 77766553 4444332 4444 555555543
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.70 E-value=2.6e-05 Score=63.52 Aligned_cols=181 Identities=18% Similarity=0.159 Sum_probs=116.9
Q ss_pred hccCCCcEEEccCCCCC----ccc-------hhccCCCCCcEEEccCCCCC-Ccc----hhhhcCccCceeeccCCcCcc
Q 023495 8 ARLLNVVVLDVHSNQLK----CLP-------NSIGCLSKLKVLDVSGNLLE-SLP----KTIENCRSLEELNANFNKLRQ 71 (281)
Q Consensus 8 ~~~~~L~~L~l~~~~l~----~l~-------~~~~~l~~L~~L~L~~n~l~-~l~----~~~~~l~~L~~L~L~~n~l~~ 71 (281)
.+-.+|++.+++.--.. .++ .++-+|++|+..+|++|.+. ..| +.+.....|.+|.+++|.+..
T Consensus 55 a~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp 134 (388)
T COG5238 55 ANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGP 134 (388)
T ss_pred hhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCc
Confidence 44567777777764322 222 34567888888888888776 333 345566788888888887764
Q ss_pred cChh-----Hh--------hcCCCCcEEEccCCcCcccCc-----cccCCCCCcEEEccCCcCCC--Ch----hhhhCCC
Q 023495 72 LPDT-----IG--------FELINLKTLSINCNKIVILPQ-----SLTHLTSLRVLDARLNCLKS--LP----EDLENLI 127 (281)
Q Consensus 72 ~~~~-----~~--------~~l~~L~~L~l~~~~l~~l~~-----~~~~l~~L~~L~l~~n~l~~--l~----~~~~~l~ 127 (281)
+..+ ++ ..-|.|++....+|++...+. .+..-..|+++-+..|.|.. +. ..+..+.
T Consensus 135 ~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~ 214 (388)
T COG5238 135 IAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSH 214 (388)
T ss_pred cchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhC
Confidence 3321 11 245778888888888764432 24444678888888888762 11 1356778
Q ss_pred CCCeeeccccccccc----CCCccccCCCcccEEEcCCCCCCCC-----Chhh--hcCCCCCEEEccCCCCCC
Q 023495 128 NLEVLNISQNFQYLE----TLPYSIGLLMSLVELDVSYNKITTL-----PDSI--GCLRKLQKLSLEGNPLVS 189 (281)
Q Consensus 128 ~L~~L~l~~n~~~~~----~~~~~~~~~~~L~~L~l~~n~i~~~-----~~~~--~~l~~L~~L~L~~n~l~~ 189 (281)
+|+.|++++| .++. .+...++.++.|+.|.+.+|-++.- -..| ...++|..|...+|.+..
T Consensus 215 ~LevLDlqDN-tft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 215 SLEVLDLQDN-TFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred cceeeecccc-chhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 8999999888 2222 2234456777889999988877621 1222 245678888888876644
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=1.3e-05 Score=65.51 Aligned_cols=101 Identities=28% Similarity=0.288 Sum_probs=76.0
Q ss_pred hccCCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhH-hhcCCCCcEE
Q 023495 8 ARLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTI-GFELINLKTL 86 (281)
Q Consensus 8 ~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L 86 (281)
+.+.+.+.|++.||+++.|. ....++.|+.|.|+-|.|+.+ ..+..|++|++|+|..|.|..+.... ..++++|++|
T Consensus 16 sdl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred hHHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34667889999999998763 245789999999999999988 56788999999999999988776532 2378899999
Q ss_pred EccCCcCc-ccC-----ccccCCCCCcEEE
Q 023495 87 SINCNKIV-ILP-----QSLTHLTSLRVLD 110 (281)
Q Consensus 87 ~l~~~~l~-~l~-----~~~~~l~~L~~L~ 110 (281)
.+..|.-. .-+ ..+.-+++|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 88777543 111 1355677777775
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.24 E-value=0.00015 Score=58.64 Aligned_cols=83 Identities=28% Similarity=0.278 Sum_probs=44.4
Q ss_pred CCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCc---ccChhHhhcCCCCcEEEccCCcCcccC--ccccCCCCCc
Q 023495 33 LSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLR---QLPDTIGFELINLKTLSINCNKIVILP--QSLTHLTSLR 107 (281)
Q Consensus 33 l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~l~~~~l~~l~--~~~~~l~~L~ 107 (281)
+..|+.+.+.+..++.+ ..+..+++|+.|.++.|... .++..+. .+++|+++++++|.+..+. ..+..+.+|.
T Consensus 42 ~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e-~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAE-KAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhh-hCCceeEEeecCCccccccccchhhhhcchh
Confidence 34455555555555443 23445667777777777332 3333333 4467777777776665321 1234455566
Q ss_pred EEEccCCcCC
Q 023495 108 VLDARLNCLK 117 (281)
Q Consensus 108 ~L~l~~n~l~ 117 (281)
.|++..|..+
T Consensus 120 ~Ldl~n~~~~ 129 (260)
T KOG2739|consen 120 SLDLFNCSVT 129 (260)
T ss_pred hhhcccCCcc
Confidence 6666666544
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=2.8e-05 Score=63.53 Aligned_cols=99 Identities=30% Similarity=0.254 Sum_probs=74.6
Q ss_pred CCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEccCCcCcccCc--cccCCCCCcEE
Q 023495 32 CLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINCNKIVILPQ--SLTHLTSLRVL 109 (281)
Q Consensus 32 ~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~l~~--~~~~l~~L~~L 109 (281)
.+.+.+.|+..|+.++.+ ....+++.|++|.|+-|.|+.+.+.. .|++|++|++..|.|..+.+ .+.++++|+.|
T Consensus 17 dl~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~pl~--rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLAPLQ--RCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccchhHH--HHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 456778889999998877 34568899999999999998887654 68999999999998887654 36788889988
Q ss_pred EccCCcCC-CChh-----hhhCCCCCCeee
Q 023495 110 DARLNCLK-SLPE-----DLENLINLEVLN 133 (281)
Q Consensus 110 ~l~~n~l~-~l~~-----~~~~l~~L~~L~ 133 (281)
-+..|... +-+. .+.-+++|+.|+
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 88887654 1111 255566776665
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.17 E-value=0.00025 Score=57.47 Aligned_cols=32 Identities=28% Similarity=0.234 Sum_probs=14.6
Q ss_pred CCCcccEEEcCCCCCCCCC----hhhhcCCCCCEEE
Q 023495 150 LLMSLVELDVSYNKITTLP----DSIGCLRKLQKLS 181 (281)
Q Consensus 150 ~~~~L~~L~l~~n~i~~~~----~~~~~l~~L~~L~ 181 (281)
.+.+|..|++.+|..+.+- ..|.-+++|+.|+
T Consensus 114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 3444555555555444321 2344445555444
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.77 E-value=0.00061 Score=33.39 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=12.9
Q ss_pred CCcEEEccCCCCCccchhccC
Q 023495 12 NVVVLDVHSNQLKCLPNSIGC 32 (281)
Q Consensus 12 ~L~~L~l~~~~l~~l~~~~~~ 32 (281)
+|++|++++|+++.+|..|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666766666666655543
No 68
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.74 E-value=1.4e-05 Score=71.89 Aligned_cols=181 Identities=28% Similarity=0.340 Sum_probs=120.7
Q ss_pred CcEEEccCCCCCc-----cchhccCCCCCcEEEccCCCCCCc-----chhhhcC-ccCceeeccCCcCc-----ccChhH
Q 023495 13 VVVLDVHSNQLKC-----LPNSIGCLSKLKVLDVSGNLLESL-----PKTIENC-RSLEELNANFNKLR-----QLPDTI 76 (281)
Q Consensus 13 L~~L~l~~~~l~~-----l~~~~~~l~~L~~L~L~~n~l~~l-----~~~~~~l-~~L~~L~L~~n~l~-----~~~~~~ 76 (281)
+..+.|.+|.+.. +...+...+.|+.|++++|.+... ...+... ..+++|++..|.++ .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 6778888888773 334567788899999999988721 2233333 56778888888776 233444
Q ss_pred hhcCCCCcEEEccCCcCc-----ccCcccc----CCCCCcEEEccCCcCCC-----ChhhhhCCCC-CCeeecccccccc
Q 023495 77 GFELINLKTLSINCNKIV-----ILPQSLT----HLTSLRVLDARLNCLKS-----LPEDLENLIN-LEVLNISQNFQYL 141 (281)
Q Consensus 77 ~~~l~~L~~L~l~~~~l~-----~l~~~~~----~l~~L~~L~l~~n~l~~-----l~~~~~~l~~-L~~L~l~~n~~~~ 141 (281)
. ....++.++++.|.+. .++..+. ...++++|.++.|.++. +...+...+. +..+++..| ..
T Consensus 169 ~-~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n--~l 245 (478)
T KOG4308|consen 169 E-KNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASN--KL 245 (478)
T ss_pred h-cccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhc--Cc
Confidence 4 4777888888888774 2233333 46788999999888772 2223555555 677888888 33
Q ss_pred cCC-----CccccCC-CcccEEEcCCCCCC-----CCChhhhcCCCCCEEEccCCCCCCCCHHHHH
Q 023495 142 ETL-----PYSIGLL-MSLVELDVSYNKIT-----TLPDSIGCLRKLQKLSLEGNPLVSPPMDVVE 196 (281)
Q Consensus 142 ~~~-----~~~~~~~-~~L~~L~l~~n~i~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 196 (281)
++. ...+..+ ..++++++..|.|. .+...+..++.++.+.++.|++.........
T Consensus 246 ~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~ 311 (478)
T KOG4308|consen 246 GDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLL 311 (478)
T ss_pred chHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHH
Confidence 322 2233444 56789999999887 2345667778899999999988776544433
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.35 E-value=0.00096 Score=60.34 Aligned_cols=108 Identities=21% Similarity=0.135 Sum_probs=54.3
Q ss_pred ccCCCcEEEccCC-CCCc--cchhccCCCCCcEEEccCC--CCCCc----chhhhcCccCceeeccCCc-CcccCh-hHh
Q 023495 9 RLLNVVVLDVHSN-QLKC--LPNSIGCLSKLKVLDVSGN--LLESL----PKTIENCRSLEELNANFNK-LRQLPD-TIG 77 (281)
Q Consensus 9 ~~~~L~~L~l~~~-~l~~--l~~~~~~l~~L~~L~L~~n--~l~~l----~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~ 77 (281)
.++.|+.+.+.++ .++. +......++.|+.|+++++ .+... ......+.+|+.|+++++. ++...- .+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 3566666666665 3333 3333455666777777652 11111 1222345666677766665 432211 122
Q ss_pred hcCCCCcEEEccCCc-Cc--ccCccccCCCCCcEEEccCCcC
Q 023495 78 FELINLKTLSINCNK-IV--ILPQSLTHLTSLRVLDARLNCL 116 (281)
Q Consensus 78 ~~l~~L~~L~l~~~~-l~--~l~~~~~~l~~L~~L~l~~n~l 116 (281)
..+++|+.|.+.++. ++ .+......++.|++|+++++..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 235667776655554 33 2222334556677777666543
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.22 E-value=0.0016 Score=31.90 Aligned_cols=18 Identities=50% Similarity=0.802 Sum_probs=10.0
Q ss_pred CcEEEccCCCCCCcchhh
Q 023495 36 LKVLDVSGNLLESLPKTI 53 (281)
Q Consensus 36 L~~L~L~~n~l~~l~~~~ 53 (281)
|++|++++|+++.+|..|
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 555666666555555444
No 71
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.80 E-value=0.003 Score=54.74 Aligned_cols=180 Identities=19% Similarity=0.150 Sum_probs=83.8
Q ss_pred HHhccCCCcEEEccCCC-CCc--cchhccCCCCCcEEEccCCC-CC--Ccchh--------------------------h
Q 023495 6 LTARLLNVVVLDVHSNQ-LKC--LPNSIGCLSKLKVLDVSGNL-LE--SLPKT--------------------------I 53 (281)
Q Consensus 6 ~~~~~~~L~~L~l~~~~-l~~--l~~~~~~l~~L~~L~L~~n~-l~--~l~~~--------------------------~ 53 (281)
+...|++|++|+++.+. ++. +...+.++..++.+.+.||. .. .+-.. -
T Consensus 211 la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~ 290 (483)
T KOG4341|consen 211 LAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIA 290 (483)
T ss_pred HHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHh
Confidence 34678899999999884 432 22234445555555444431 11 11011 1
Q ss_pred hcCccCceeeccCCcC-c-ccChhHhhcCCCCcEEEccCCcC-ccc--CccccCCCCCcEEEccCCcCC---CChhhhhC
Q 023495 54 ENCRSLEELNANFNKL-R-QLPDTIGFELINLKTLSINCNKI-VIL--PQSLTHLTSLRVLDARLNCLK---SLPEDLEN 125 (281)
Q Consensus 54 ~~l~~L~~L~L~~n~l-~-~~~~~~~~~l~~L~~L~l~~~~l-~~l--~~~~~~l~~L~~L~l~~n~l~---~l~~~~~~ 125 (281)
..+..|++|+.+++.- + .+-..+.++.++|+.+.+.+++- +.. ...-.++..|+.+++.++... ++...-.+
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~ 370 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN 370 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence 1233444444443321 1 11122333455555555554431 110 011123445555555555433 12222345
Q ss_pred CCCCCeeecccccccccCC-----CccccCCCcccEEEcCCCCCC--CCChhhhcCCCCCEEEccCCC
Q 023495 126 LINLEVLNISQNFQYLETL-----PYSIGLLMSLVELDVSYNKIT--TLPDSIGCLRKLQKLSLEGNP 186 (281)
Q Consensus 126 l~~L~~L~l~~n~~~~~~~-----~~~~~~~~~L~~L~l~~n~i~--~~~~~~~~l~~L~~L~L~~n~ 186 (281)
++.|+.+.++++ ..+.+. ...-.....++.+.++++... ..-..+..+++|+.+++-+++
T Consensus 371 C~~lr~lslshc-e~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 371 CPRLRVLSLSHC-ELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred CchhccCChhhh-hhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 666666666665 222221 122234455666666666443 222455666777777666663
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.75 E-value=0.0075 Score=27.38 Aligned_cols=15 Identities=40% Similarity=0.629 Sum_probs=6.5
Q ss_pred CCcEEEccCCCCCcc
Q 023495 12 NVVVLDVHSNQLKCL 26 (281)
Q Consensus 12 ~L~~L~l~~~~l~~l 26 (281)
+|+.|++++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 455555555555544
No 73
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.57 E-value=0.0035 Score=54.34 Aligned_cols=175 Identities=16% Similarity=0.089 Sum_probs=111.2
Q ss_pred ccCCCcEEEccCCC-CCcc--chhccCCCCCcEEEccCC-CCCCc--chhhhcCccCceeeccCCcC-cccC-hhHhhcC
Q 023495 9 RLLNVVVLDVHSNQ-LKCL--PNSIGCLSKLKVLDVSGN-LLESL--PKTIENCRSLEELNANFNKL-RQLP-DTIGFEL 80 (281)
Q Consensus 9 ~~~~L~~L~l~~~~-l~~l--~~~~~~l~~L~~L~L~~n-~l~~l--~~~~~~l~~L~~L~L~~n~l-~~~~-~~~~~~l 80 (281)
.+..+..+++..|+ ++.. ...-..+..||.|+.+++ .++.. ..--.++.+|+.+-+..++. +..- ..+..++
T Consensus 266 ~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~ 345 (483)
T KOG4341|consen 266 YCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNC 345 (483)
T ss_pred cChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCC
Confidence 45566777776763 4322 222345778999998886 34322 12224678999999988852 2111 1233478
Q ss_pred CCCcEEEccCCcCc---ccCccccCCCCCcEEEccCCcCC------CChhhhhCCCCCCeeecccccccccCCCccccCC
Q 023495 81 INLKTLSINCNKIV---ILPQSLTHLTSLRVLDARLNCLK------SLPEDLENLINLEVLNISQNFQYLETLPYSIGLL 151 (281)
Q Consensus 81 ~~L~~L~l~~~~l~---~l~~~~~~l~~L~~L~l~~n~l~------~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 151 (281)
+.|+.+++..+... .+...-.+++.|+.+.++.+... .+...-..+..|..+.++++........+.+..+
T Consensus 346 ~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c 425 (483)
T KOG4341|consen 346 PHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSIC 425 (483)
T ss_pred hhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhC
Confidence 88999999877654 23333457888999999876533 1122234567888999988854555555667888
Q ss_pred CcccEEEcCCCCC-C--CCChhhhcCCCCCEEEcc
Q 023495 152 MSLVELDVSYNKI-T--TLPDSIGCLRKLQKLSLE 183 (281)
Q Consensus 152 ~~L~~L~l~~n~i-~--~~~~~~~~l~~L~~L~L~ 183 (281)
++|+.+++.+++- + .+.....++++++...+.
T Consensus 426 ~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 426 RNLERIELIDCQDVTKEAISRFATHLPNIKVHAYF 460 (483)
T ss_pred cccceeeeechhhhhhhhhHHHHhhCccceehhhc
Confidence 9999999988843 3 333445677776665443
No 74
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.43 E-value=0.009 Score=54.01 Aligned_cols=106 Identities=24% Similarity=0.237 Sum_probs=66.6
Q ss_pred HHhccCCCcEEEccCC-C-CCccc----hhccCCCCCcEEEccCCC-CCCc--chhhhcCccCceeeccCCc-Cccc-Ch
Q 023495 6 LTARLLNVVVLDVHSN-Q-LKCLP----NSIGCLSKLKVLDVSGNL-LESL--PKTIENCRSLEELNANFNK-LRQL-PD 74 (281)
Q Consensus 6 ~~~~~~~L~~L~l~~~-~-l~~l~----~~~~~l~~L~~L~L~~n~-l~~l--~~~~~~l~~L~~L~L~~n~-l~~~-~~ 74 (281)
+...++.|+.|+++++ . +...+ .....+.+|+.|+++++. ++.. ..-...+++|++|.+..+. ++.- -.
T Consensus 209 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~ 288 (482)
T KOG1947|consen 209 LALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLV 288 (482)
T ss_pred HHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHH
Confidence 4467899999999983 2 22111 233556889999999987 6643 2222348899999988776 4421 12
Q ss_pred hHhhcCCCCcEEEccCCcCc---ccCccccCCCCCcEEEc
Q 023495 75 TIGFELINLKTLSINCNKIV---ILPQSLTHLTSLRVLDA 111 (281)
Q Consensus 75 ~~~~~l~~L~~L~l~~~~l~---~l~~~~~~l~~L~~L~l 111 (281)
.+...++.|++|+++.+... .+.....++++++.+.+
T Consensus 289 ~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 289 SIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred HHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 23347889999999877643 12222344666665543
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.31 E-value=0.013 Score=26.60 Aligned_cols=15 Identities=53% Similarity=0.718 Sum_probs=6.4
Q ss_pred CCcEEEccCCCCCCc
Q 023495 35 KLKVLDVSGNLLESL 49 (281)
Q Consensus 35 ~L~~L~L~~n~l~~l 49 (281)
+|+.|++++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 455555555555544
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.55 E-value=0.001 Score=59.95 Aligned_cols=182 Identities=28% Similarity=0.286 Sum_probs=121.4
Q ss_pred HhccCCCcEEEccCCCCCc-----cchhccCC-CCCcEEEccCCCCCC-----cchhhhcCccCceeeccCCcCc-----
Q 023495 7 TARLLNVVVLDVHSNQLKC-----LPNSIGCL-SKLKVLDVSGNLLES-----LPKTIENCRSLEELNANFNKLR----- 70 (281)
Q Consensus 7 ~~~~~~L~~L~l~~~~l~~-----l~~~~~~l-~~L~~L~L~~n~l~~-----l~~~~~~l~~L~~L~L~~n~l~----- 70 (281)
......|..|++++|++.. +...+... ..+++|++..|.++. +...+.....++.++++.|.+.
T Consensus 111 l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~ 190 (478)
T KOG4308|consen 111 LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLL 190 (478)
T ss_pred hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhH
Confidence 4567789999999999882 12223332 567889999988873 3556667888999999999774
Q ss_pred ccChhHh---hcCCCCcEEEccCCcCc-----ccCccccCCCC-CcEEEccCCcCCCC-----hhhhhCC-CCCCeeecc
Q 023495 71 QLPDTIG---FELINLKTLSINCNKIV-----ILPQSLTHLTS-LRVLDARLNCLKSL-----PEDLENL-INLEVLNIS 135 (281)
Q Consensus 71 ~~~~~~~---~~l~~L~~L~l~~~~l~-----~l~~~~~~l~~-L~~L~l~~n~l~~l-----~~~~~~l-~~L~~L~l~ 135 (281)
.++..+. ....++++|.+.++.++ .+...+...+. +..+++..|.+... ...+..+ ..+++++++
T Consensus 191 ~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~ 270 (478)
T KOG4308|consen 191 VLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLS 270 (478)
T ss_pred HHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhh
Confidence 1222222 14678999999998876 22334555555 77799999988733 2335555 678999999
Q ss_pred cccccccC----CCccccCCCcccEEEcCCCCCCC-----CChhhhcCCCCCEEEccCCCCCC
Q 023495 136 QNFQYLET----LPYSIGLLMSLVELDVSYNKITT-----LPDSIGCLRKLQKLSLEGNPLVS 189 (281)
Q Consensus 136 ~n~~~~~~----~~~~~~~~~~L~~L~l~~n~i~~-----~~~~~~~l~~L~~L~L~~n~l~~ 189 (281)
.| ..... +...+..+..++.+.+..|.+.. +-..+.....+..+.+.++....
T Consensus 271 ~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 332 (478)
T KOG4308|consen 271 RN-SITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGKGT 332 (478)
T ss_pred cC-CccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCccc
Confidence 99 33222 33445677899999999998872 12334455566667777555444
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.47 E-value=0.0012 Score=52.81 Aligned_cols=84 Identities=27% Similarity=0.288 Sum_probs=38.6
Q ss_pred hccCCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEE
Q 023495 8 ARLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLS 87 (281)
Q Consensus 8 ~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 87 (281)
..+.+.++||++.|++-.+...|+-+..+.+|+++.|.+..+|..+.....++.+++..|.++..|.... ..+.++.++
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~-k~~~~k~~e 117 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQK-KEPHPKKNE 117 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCcccc-ccCCcchhh
Confidence 3444444455554444433333444444444455544444444444444444444444444444444433 444444444
Q ss_pred ccCCc
Q 023495 88 INCNK 92 (281)
Q Consensus 88 l~~~~ 92 (281)
.-++.
T Consensus 118 ~k~~~ 122 (326)
T KOG0473|consen 118 QKKTE 122 (326)
T ss_pred hccCc
Confidence 44443
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.43 E-value=0.038 Score=28.00 Aligned_cols=21 Identities=33% Similarity=0.381 Sum_probs=11.8
Q ss_pred ccCceeeccCCcCcccChhHh
Q 023495 57 RSLEELNANFNKLRQLPDTIG 77 (281)
Q Consensus 57 ~~L~~L~L~~n~l~~~~~~~~ 77 (281)
++|++|+|++|.++.+|..++
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 355556666666655555543
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.43 E-value=0.038 Score=28.00 Aligned_cols=21 Identities=33% Similarity=0.381 Sum_probs=11.8
Q ss_pred ccCceeeccCCcCcccChhHh
Q 023495 57 RSLEELNANFNKLRQLPDTIG 77 (281)
Q Consensus 57 ~~L~~L~L~~n~l~~~~~~~~ 77 (281)
++|++|+|++|.++.+|..++
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 355556666666655555543
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.33 E-value=0.0011 Score=53.13 Aligned_cols=84 Identities=20% Similarity=0.172 Sum_probs=41.9
Q ss_pred cCCCCcEEEccCCcCcccCccccCCCCCcEEEccCCcCCCChhhhhCCCCCCeeecccccccccCCCccccCCCcccEEE
Q 023495 79 ELINLKTLSINCNKIVILPQSLTHLTSLRVLDARLNCLKSLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELD 158 (281)
Q Consensus 79 ~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 158 (281)
.....+.||++.|++..+-..+.-++.+..++++.|.+..+|.+++....++.+++..| .....|.++...+.++.++
T Consensus 40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n--~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN--NHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc--chhhCCccccccCCcchhh
Confidence 34445555555555444444444445555555555555555555555555555555444 2334444555555555555
Q ss_pred cCCCCC
Q 023495 159 VSYNKI 164 (281)
Q Consensus 159 l~~n~i 164 (281)
+.++.+
T Consensus 118 ~k~~~~ 123 (326)
T KOG0473|consen 118 QKKTEF 123 (326)
T ss_pred hccCcc
Confidence 555443
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.06 E-value=0.055 Score=27.39 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=12.4
Q ss_pred CCCCEEEccCCCCCCCCHHHH
Q 023495 175 RKLQKLSLEGNPLVSPPMDVV 195 (281)
Q Consensus 175 ~~L~~L~L~~n~l~~~~~~~~ 195 (281)
++|+.|+|++|.|+.++..++
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 455666666666666655544
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.06 E-value=0.055 Score=27.39 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=12.4
Q ss_pred CCCCEEEccCCCCCCCCHHHH
Q 023495 175 RKLQKLSLEGNPLVSPPMDVV 195 (281)
Q Consensus 175 ~~L~~L~L~~n~l~~~~~~~~ 195 (281)
++|+.|+|++|.|+.++..++
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 455666666666666655544
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.87 E-value=0.11 Score=25.62 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=9.7
Q ss_pred CCCCCEEEccCCCCCCCCH
Q 023495 174 LRKLQKLSLEGNPLVSPPM 192 (281)
Q Consensus 174 l~~L~~L~L~~n~l~~~~~ 192 (281)
+++|++|+|++|.|.....
T Consensus 1 ~~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGA 19 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHH
T ss_pred CCCCCEEEccCCcCCHHHH
Confidence 3566777777776654433
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.46 E-value=0.12 Score=40.75 Aligned_cols=81 Identities=25% Similarity=0.292 Sum_probs=52.2
Q ss_pred CCCcEEEccCCcCCCC-hhhhhCCCCCCeeecccccccccCC-Ccccc-CCCcccEEEcCCC-CCCCC-ChhhhcCCCCC
Q 023495 104 TSLRVLDARLNCLKSL-PEDLENLINLEVLNISQNFQYLETL-PYSIG-LLMSLVELDVSYN-KITTL-PDSIGCLRKLQ 178 (281)
Q Consensus 104 ~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~-~~~~L~~L~l~~n-~i~~~-~~~~~~l~~L~ 178 (281)
..++.+|.++..|... -..+.+++.++.|.+.++. ..++- .+.++ ..++|+.|++++| +|++- -.++..+++|+
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck-~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK-YFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheecccc-chhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 4577888888777632 2346777788888887772 22211 11122 3578999999977 67643 25677788888
Q ss_pred EEEccCC
Q 023495 179 KLSLEGN 185 (281)
Q Consensus 179 ~L~L~~n 185 (281)
.|.+.+=
T Consensus 180 ~L~l~~l 186 (221)
T KOG3864|consen 180 RLHLYDL 186 (221)
T ss_pred HHHhcCc
Confidence 8877654
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=85.94 E-value=0.67 Score=23.90 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=15.6
Q ss_pred CCCCEEEccCCCCCCCCHHHHHh
Q 023495 175 RKLQKLSLEGNPLVSPPMDVVEQ 197 (281)
Q Consensus 175 ~~L~~L~L~~n~l~~~~~~~~~~ 197 (281)
++|+.|+|++|.+.......+.+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHH
Confidence 46788888888887655555443
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=83.12 E-value=0.82 Score=23.18 Aligned_cols=17 Identities=41% Similarity=0.640 Sum_probs=9.8
Q ss_pred CCcEEEccCCCCCccch
Q 023495 12 NVVVLDVHSNQLKCLPN 28 (281)
Q Consensus 12 ~L~~L~l~~~~l~~l~~ 28 (281)
+|++|+.++|+++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45566666666665553
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=81.92 E-value=1.3 Score=22.49 Aligned_cols=14 Identities=36% Similarity=0.496 Sum_probs=6.9
Q ss_pred CCcEEEccCCCCCc
Q 023495 12 NVVVLDVHSNQLKC 25 (281)
Q Consensus 12 ~L~~L~l~~~~l~~ 25 (281)
+|+.|++++|.|+.
T Consensus 3 ~L~~L~L~~NkI~~ 16 (26)
T smart00365 3 NLEELDLSQNKIKK 16 (26)
T ss_pred ccCEEECCCCccce
Confidence 44555555554443
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=70.71 E-value=2.5 Score=38.56 Aligned_cols=78 Identities=27% Similarity=0.249 Sum_probs=41.6
Q ss_pred ccCCCcEEEccCCCCCccc---hhccCCCCCcEEEccCC--CCCCcchhhh--cCccCceeeccCCcCcc-------cCh
Q 023495 9 RLLNVVVLDVHSNQLKCLP---NSIGCLSKLKVLDVSGN--LLESLPKTIE--NCRSLEELNANFNKLRQ-------LPD 74 (281)
Q Consensus 9 ~~~~L~~L~l~~~~l~~l~---~~~~~l~~L~~L~L~~n--~l~~l~~~~~--~l~~L~~L~L~~n~l~~-------~~~ 74 (281)
+.+.+..++|++|++.++. .-....++|+.|+|++| .+... ..+. +...|++|.+.+|.+.. .-.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~-~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE-SELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch-hhhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 4556667777777666542 11234567777777777 23221 1222 23356777777776651 111
Q ss_pred hHhhcCCCCcEEE
Q 023495 75 TIGFELINLKTLS 87 (281)
Q Consensus 75 ~~~~~l~~L~~L~ 87 (281)
.+...+|+|..||
T Consensus 295 ~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 295 AIRELFPKLLRLD 307 (585)
T ss_pred HHHHhcchheeec
Confidence 2233566666655
No 89
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.57 E-value=0.63 Score=36.82 Aligned_cols=77 Identities=16% Similarity=0.069 Sum_probs=37.6
Q ss_pred CcEEEccCCcCccc-CccccCCCCCcEEEccCCcCCCChhh----hh-CCCCCCeeecccccccccCCCccccCCCcccE
Q 023495 83 LKTLSINCNKIVIL-PQSLTHLTSLRVLDARLNCLKSLPED----LE-NLINLEVLNISQNFQYLETLPYSIGLLMSLVE 156 (281)
Q Consensus 83 L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~l~~l~~~----~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 156 (281)
++.++-++..+... -..+.++..++.|.+.+|.- +.++ ++ -.++|+.|++++|...+..-...+..+++|+.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~--~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKY--FDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccc--hhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 44455444444321 12234445555555544431 1111 11 23577777777774433333444566677777
Q ss_pred EEcCC
Q 023495 157 LDVSY 161 (281)
Q Consensus 157 L~l~~ 161 (281)
|++.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 76654
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=64.68 E-value=4 Score=37.28 Aligned_cols=63 Identities=24% Similarity=0.134 Sum_probs=31.3
Q ss_pred cCccCceeeccCCcCcccCh--hHhhcCCCCcEEEccCCc--CcccCcc-ccCCCCCcEEEccCCcCC
Q 023495 55 NCRSLEELNANFNKLRQLPD--TIGFELINLKTLSINCNK--IVILPQS-LTHLTSLRVLDARLNCLK 117 (281)
Q Consensus 55 ~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~l~~~~--l~~l~~~-~~~l~~L~~L~l~~n~l~ 117 (281)
+.+.+..++|++|++..+.. .+....|+|.+|+|++|. +...++. -.....|++|-+.+|.+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 44556666666666553322 222356666666666662 2211110 012234666666666654
No 91
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=58.81 E-value=12 Score=40.96 Aligned_cols=32 Identities=38% Similarity=0.579 Sum_probs=28.0
Q ss_pred EcCCCCCCCCC-hhhhcCCCCCEEEccCCCCCC
Q 023495 158 DVSYNKITTLP-DSIGCLRKLQKLSLEGNPLVS 189 (281)
Q Consensus 158 ~l~~n~i~~~~-~~~~~l~~L~~L~L~~n~l~~ 189 (281)
||++|+|+.+| ..|..+++|+.|+|++|++..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 68899999887 577889999999999999865
No 92
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=52.96 E-value=9.6 Score=18.92 Aligned_cols=11 Identities=27% Similarity=0.253 Sum_probs=5.4
Q ss_pred CCCcEEEccCC
Q 023495 11 LNVVVLDVHSN 21 (281)
Q Consensus 11 ~~L~~L~l~~~ 21 (281)
++|++|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 44455555544
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=36.87 E-value=28 Score=38.50 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=25.1
Q ss_pred EccCCCCCCcc-hhhhcCccCceeeccCCcCc
Q 023495 40 DVSGNLLESLP-KTIENCRSLEELNANFNKLR 70 (281)
Q Consensus 40 ~L~~n~l~~l~-~~~~~l~~L~~L~L~~n~l~ 70 (281)
||++|+|+.++ ..|..+.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57888998885 55777889999999988776
No 94
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=25.19 E-value=46 Score=16.86 Aligned_cols=14 Identities=21% Similarity=0.169 Sum_probs=8.3
Q ss_pred HHhccCCCcEEEcc
Q 023495 6 LTARLLNVVVLDVH 19 (281)
Q Consensus 6 ~~~~~~~L~~L~l~ 19 (281)
++..+++|+.||..
T Consensus 8 Vi~~LPqL~~LD~~ 21 (26)
T smart00446 8 VIRLLPQLRKLDXX 21 (26)
T ss_pred HHHHCCccceeccc
Confidence 44566666666654
Done!