Query 023495
Match_columns 281
No_of_seqs 237 out of 3279
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 07:47:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023495.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023495hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 1.4E-26 4.9E-31 198.1 15.9 176 11-189 81-267 (328)
2 4fcg_A Uncharacterized protein 99.9 4.6E-26 1.6E-30 195.0 11.4 188 1-190 95-292 (328)
3 2z66_A Variable lymphocyte rec 99.9 6.4E-27 2.2E-31 198.2 5.0 182 11-194 28-218 (306)
4 1ozn_A Reticulon 4 receptor; N 99.9 4.7E-25 1.6E-29 184.9 12.2 185 10-196 31-222 (285)
5 1ozn_A Reticulon 4 receptor; N 99.9 3.5E-24 1.2E-28 179.6 16.4 188 2-190 47-240 (285)
6 3o6n_A APL1; leucine-rich repe 99.9 5.8E-24 2E-28 186.0 16.4 231 2-238 60-353 (390)
7 1xku_A Decorin; proteoglycan, 99.9 2.3E-23 7.8E-28 178.2 18.0 185 2-191 67-256 (330)
8 1ogq_A PGIP-2, polygalacturona 99.9 4.3E-25 1.5E-29 187.7 7.0 178 8-188 73-257 (313)
9 1ogq_A PGIP-2, polygalacturona 99.9 4.3E-24 1.5E-28 181.5 13.2 183 2-189 93-282 (313)
10 2o6q_A Variable lymphocyte rec 99.9 3E-23 1E-27 172.6 18.0 179 11-190 37-220 (270)
11 3oja_B Anopheles plasmodium-re 99.9 1.1E-23 3.7E-28 194.1 16.4 231 2-238 66-359 (597)
12 2ft3_A Biglycan; proteoglycan, 99.9 1.9E-23 6.6E-28 178.9 15.7 185 6-193 73-282 (332)
13 1p9a_G Platelet glycoprotein I 99.9 2.4E-23 8.1E-28 175.0 15.8 183 7-194 6-191 (290)
14 3zyj_A Leucine-rich repeat-con 99.9 1.9E-23 6.4E-28 185.7 15.9 191 3-195 80-275 (440)
15 2z66_A Variable lymphocyte rec 99.9 1.6E-24 5.5E-29 183.4 8.5 194 1-195 42-243 (306)
16 1p9a_G Platelet glycoprotein I 99.9 5E-23 1.7E-27 173.1 16.8 182 2-190 25-210 (290)
17 3zyi_A Leucine-rich repeat-con 99.9 2.3E-23 7.9E-28 185.7 15.3 188 5-194 93-285 (452)
18 3zyj_A Leucine-rich repeat-con 99.9 5.2E-24 1.8E-28 189.2 10.5 231 2-240 58-295 (440)
19 1h6u_A Internalin H; cell adhe 99.9 1.2E-22 4E-27 172.3 17.7 174 8-191 38-211 (308)
20 2z62_A TOLL-like receptor 4, v 99.9 2.2E-23 7.5E-28 173.9 13.0 182 11-193 28-218 (276)
21 3zyi_A Leucine-rich repeat-con 99.9 1E-23 3.4E-28 188.1 10.6 231 2-240 69-306 (452)
22 3rgz_A Protein brassinosteroid 99.9 2E-22 7E-27 190.6 20.2 192 2-196 410-677 (768)
23 2z62_A TOLL-like receptor 4, v 99.9 5.4E-23 1.8E-27 171.6 14.3 188 2-191 43-240 (276)
24 3rfs_A Internalin B, repeat mo 99.9 2.8E-22 9.5E-27 167.0 18.5 182 8-192 38-222 (272)
25 4eco_A Uncharacterized protein 99.9 1.1E-24 3.7E-29 202.1 4.3 189 2-195 198-453 (636)
26 3o6n_A APL1; leucine-rich repe 99.9 1.1E-22 3.9E-27 177.8 16.6 188 3-192 85-335 (390)
27 1h6u_A Internalin H; cell adhe 99.9 2.4E-22 8.3E-27 170.3 18.2 177 7-193 59-235 (308)
28 2id5_A Lingo-1, leucine rich r 99.9 2.3E-23 7.8E-28 186.9 12.3 157 5-162 50-210 (477)
29 3rgz_A Protein brassinosteroid 99.9 1.1E-22 3.7E-27 192.5 17.5 191 2-195 434-700 (768)
30 4ecn_A Leucine-rich repeat pro 99.9 2.5E-23 8.6E-28 197.5 13.1 166 2-171 440-638 (876)
31 4eco_A Uncharacterized protein 99.9 1.3E-23 4.3E-28 194.9 10.5 191 2-196 239-478 (636)
32 2id5_A Lingo-1, leucine rich r 99.9 1.1E-23 3.7E-28 189.0 8.7 188 5-193 74-290 (477)
33 2xwt_C Thyrotropin receptor; s 99.9 5.8E-23 2E-27 167.8 12.2 180 11-193 31-223 (239)
34 3m19_A Variable lymphocyte rec 99.9 4.8E-22 1.7E-26 163.6 17.5 180 9-192 11-196 (251)
35 1wwl_A Monocyte differentiatio 99.9 4.3E-23 1.5E-27 175.3 11.3 181 9-192 93-291 (312)
36 2o6q_A Variable lymphocyte rec 99.9 4.6E-22 1.6E-26 165.5 17.3 181 12-196 17-202 (270)
37 3vq2_A TLR4, TOLL-like recepto 99.9 2E-22 6.7E-27 185.8 15.4 184 8-192 347-538 (606)
38 3t6q_A CD180 antigen; protein- 99.9 6.3E-23 2.1E-27 189.1 12.0 191 4-195 50-321 (606)
39 3oja_B Anopheles plasmodium-re 99.9 3.2E-22 1.1E-26 184.2 16.7 188 3-192 91-341 (597)
40 3v47_A TOLL-like receptor 5B a 99.9 3.1E-23 1.1E-27 184.7 9.5 88 7-94 75-167 (455)
41 2z80_A TOLL-like receptor 2, v 99.9 6.9E-23 2.3E-27 176.9 11.1 188 2-191 67-317 (353)
42 1h6t_A Internalin B; cell adhe 99.9 5.4E-22 1.8E-26 166.9 16.2 176 8-193 43-218 (291)
43 2z80_A TOLL-like receptor 2, v 99.9 1E-22 3.5E-27 175.8 11.9 188 2-193 46-240 (353)
44 3t6q_A CD180 antigen; protein- 99.9 1.2E-22 4.2E-27 187.2 12.5 187 2-189 269-463 (606)
45 1wwl_A Monocyte differentiatio 99.9 3.2E-22 1.1E-26 169.9 14.0 185 2-192 57-270 (312)
46 1xku_A Decorin; proteoglycan, 99.9 3.9E-22 1.3E-26 170.5 13.9 179 11-196 52-237 (330)
47 3o53_A Protein LRIM1, AGAP0063 99.9 2.9E-22 1E-26 170.5 11.7 180 5-188 28-250 (317)
48 2ft3_A Biglycan; proteoglycan, 99.9 3.2E-22 1.1E-26 171.2 11.5 177 11-195 54-237 (332)
49 3v47_A TOLL-like receptor 5B a 99.9 3.8E-22 1.3E-26 177.7 12.2 111 7-117 50-167 (455)
50 2xwt_C Thyrotropin receptor; s 99.9 5.1E-22 1.7E-26 162.2 11.6 179 2-185 46-236 (239)
51 4fmz_A Internalin; leucine ric 99.9 3.8E-20 1.3E-24 159.2 23.0 175 7-190 84-258 (347)
52 4fmz_A Internalin; leucine ric 99.9 2.4E-20 8.3E-25 160.3 20.6 177 7-192 62-238 (347)
53 3vq2_A TLR4, TOLL-like recepto 99.9 5.8E-22 2E-26 182.7 11.0 183 9-194 326-516 (606)
54 4ecn_A Leucine-rich repeat pro 99.9 6.3E-21 2.2E-25 181.1 18.1 182 8-191 592-822 (876)
55 1ziw_A TOLL-like receptor 3; i 99.9 1.4E-21 4.8E-26 182.5 13.1 186 8-196 402-605 (680)
56 3rfs_A Internalin B, repeat mo 99.9 1.9E-21 6.5E-26 161.9 12.2 175 7-189 59-236 (272)
57 2z7x_B TOLL-like receptor 1, v 99.9 2.3E-21 7.9E-26 175.6 13.1 42 149-190 321-363 (520)
58 3oja_A Leucine-rich immune mol 99.9 1.3E-21 4.5E-26 175.8 11.4 173 12-188 35-250 (487)
59 2z81_A CD282 antigen, TOLL-lik 99.9 1.9E-21 6.4E-26 177.2 12.3 186 1-190 19-211 (549)
60 3m19_A Variable lymphocyte rec 99.9 1.2E-20 4E-25 155.3 15.5 162 2-167 29-194 (251)
61 3cvr_A Invasion plasmid antige 99.9 8.5E-21 2.9E-25 172.7 16.0 165 11-196 80-251 (571)
62 4glp_A Monocyte differentiatio 99.9 9.4E-22 3.2E-26 166.8 9.1 181 9-192 89-289 (310)
63 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.8E-21 9.7E-26 176.7 12.7 104 11-117 52-159 (562)
64 3bz5_A Internalin-J, INLJ; leu 99.9 2E-20 7E-25 166.7 17.7 172 7-191 38-228 (457)
65 1ziw_A TOLL-like receptor 3; i 99.9 2.4E-20 8.1E-25 174.2 18.6 155 11-166 25-185 (680)
66 2z81_A CD282 antigen, TOLL-lik 99.9 2E-20 6.9E-25 170.4 17.6 180 2-190 325-512 (549)
67 3o53_A Protein LRIM1, AGAP0063 99.8 2.3E-21 8E-26 164.9 10.6 178 12-193 11-209 (317)
68 1m9s_A Internalin B; cell inva 99.8 1.3E-20 4.6E-25 172.9 15.7 176 8-193 40-215 (605)
69 1o6v_A Internalin A; bacterial 99.8 4.1E-20 1.4E-24 165.3 18.5 176 7-191 64-259 (466)
70 4glp_A Monocyte differentiatio 99.8 6.5E-21 2.2E-25 161.6 12.5 180 12-193 65-269 (310)
71 1xeu_A Internalin C; cellular 99.8 2.4E-21 8.3E-26 160.5 9.2 174 9-193 17-190 (263)
72 3oja_A Leucine-rich immune mol 99.8 7.1E-21 2.4E-25 171.1 11.6 165 25-193 21-209 (487)
73 4g8a_A TOLL-like receptor 4; l 99.8 2.1E-20 7.4E-25 172.6 14.4 174 12-186 53-235 (635)
74 3bz5_A Internalin-J, INLJ; leu 99.8 1.5E-19 5.2E-24 161.1 18.5 173 7-194 60-252 (457)
75 2z63_A TOLL-like receptor 4, v 99.8 3.9E-21 1.3E-25 175.7 7.8 181 7-190 278-485 (570)
76 2z63_A TOLL-like receptor 4, v 99.8 1.7E-20 5.9E-25 171.4 12.0 184 9-194 323-513 (570)
77 2z7x_B TOLL-like receptor 1, v 99.8 1.4E-19 4.8E-24 163.9 17.5 175 11-190 302-483 (520)
78 1o6v_A Internalin A; bacterial 99.8 4.1E-19 1.4E-23 158.8 19.8 174 7-190 173-346 (466)
79 3j0a_A TOLL-like receptor 5; m 99.8 1.2E-20 4.1E-25 180.2 10.2 113 6-118 43-162 (844)
80 2ca6_A RAN GTPase-activating p 99.8 2E-20 6.7E-25 163.4 9.9 63 8-70 57-135 (386)
81 4ezg_A Putative uncharacterize 99.8 1.1E-19 3.8E-24 144.0 12.6 153 31-189 41-195 (197)
82 4ezg_A Putative uncharacterize 99.8 1.9E-19 6.6E-24 142.6 13.3 151 8-165 41-194 (197)
83 3j0a_A TOLL-like receptor 5; m 99.8 2.8E-20 9.5E-25 177.7 10.1 182 10-192 23-221 (844)
84 2xot_A Amphoterin-induced prot 99.8 1.6E-19 5.4E-24 156.3 13.3 174 13-190 20-204 (361)
85 3e6j_A Variable lymphocyte rec 99.8 5.5E-19 1.9E-23 143.3 15.2 151 37-191 22-175 (229)
86 3g06_A SSPH2 (leucine-rich rep 99.8 7.6E-19 2.6E-23 161.6 17.8 85 104-196 221-305 (622)
87 3cvr_A Invasion plasmid antige 99.8 3.3E-19 1.1E-23 162.2 15.1 162 11-195 59-227 (571)
88 1xeu_A Internalin C; cellular 99.8 2.6E-19 8.8E-24 148.3 12.7 153 7-169 37-189 (263)
89 4g8a_A TOLL-like receptor 4; l 99.8 2.3E-19 7.8E-24 165.7 13.7 179 14-194 34-220 (635)
90 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 9.7E-19 3.3E-23 159.9 17.5 175 11-190 331-512 (562)
91 2o6s_A Variable lymphocyte rec 99.8 1.3E-19 4.5E-24 144.7 10.2 172 13-193 9-183 (208)
92 1h6t_A Internalin B; cell adhe 99.8 7.1E-19 2.4E-23 147.8 15.1 153 7-168 64-216 (291)
93 2o6s_A Variable lymphocyte rec 99.8 3.8E-19 1.3E-23 142.0 12.1 153 36-191 9-164 (208)
94 2v9t_B SLIT homolog 2 protein 99.8 9.6E-19 3.3E-23 141.0 13.8 150 38-190 15-167 (220)
95 2v70_A SLIT-2, SLIT homolog 2 99.8 1.3E-18 4.5E-23 140.2 13.6 150 38-190 15-168 (220)
96 2ca6_A RAN GTPase-activating p 99.8 1.8E-19 6.1E-24 157.3 9.2 189 2-194 24-263 (386)
97 3g06_A SSPH2 (leucine-rich rep 99.8 2.6E-18 8.8E-23 158.1 17.0 95 11-118 61-155 (622)
98 2ast_B S-phase kinase-associat 99.8 3E-19 1E-23 152.8 9.8 176 9-185 91-282 (336)
99 2v70_A SLIT-2, SLIT homolog 2 99.8 2E-18 6.9E-23 139.1 14.1 151 13-166 13-167 (220)
100 2v9t_B SLIT homolog 2 protein 99.8 2E-18 7E-23 139.1 13.8 151 13-166 13-166 (220)
101 3e6j_A Variable lymphocyte rec 99.8 3.3E-18 1.1E-22 138.7 15.1 150 13-166 21-173 (229)
102 3goz_A Leucine-rich repeat-con 99.8 5.5E-19 1.9E-23 153.0 10.7 191 5-196 16-246 (362)
103 4ay9_X Follicle-stimulating ho 99.8 8.8E-19 3E-23 151.0 11.8 190 1-195 23-222 (350)
104 1dce_A Protein (RAB geranylger 99.8 4E-21 1.4E-25 175.3 -3.2 181 8-192 346-550 (567)
105 2ast_B S-phase kinase-associat 99.8 4.3E-19 1.5E-23 151.8 8.5 182 5-186 62-258 (336)
106 1jl5_A Outer protein YOPM; leu 99.8 8.1E-18 2.8E-22 149.8 17.0 78 35-118 132-209 (454)
107 1jl5_A Outer protein YOPM; leu 99.8 5.4E-18 1.8E-22 151.0 15.3 161 11-189 131-291 (454)
108 2xot_A Amphoterin-induced prot 99.8 1E-17 3.4E-22 145.0 14.5 159 36-197 20-185 (361)
109 1m9s_A Internalin B; cell inva 99.8 1.3E-17 4.5E-22 153.1 15.6 153 7-168 61-213 (605)
110 2ell_A Acidic leucine-rich nuc 99.7 9.7E-18 3.3E-22 129.3 10.8 126 11-137 24-157 (168)
111 3goz_A Leucine-rich repeat-con 99.7 5.8E-18 2E-22 146.5 10.1 189 5-195 44-273 (362)
112 4ay9_X Follicle-stimulating ho 99.7 8.4E-18 2.9E-22 144.9 11.0 187 2-191 45-240 (350)
113 1a9n_A U2A', U2A'; complex (nu 99.7 1.3E-17 4.5E-22 129.6 9.1 129 8-137 16-150 (176)
114 1dce_A Protein (RAB geranylger 99.7 2.9E-19 9.8E-24 163.1 -0.7 176 2-182 364-567 (567)
115 4b8c_D Glucose-repressible alc 99.7 4.7E-17 1.6E-21 152.7 13.4 121 74-196 217-337 (727)
116 2je0_A Acidic leucine-rich nuc 99.7 3.6E-17 1.2E-21 123.5 10.4 126 9-135 15-148 (149)
117 1z7x_W Ribonuclease inhibitor; 99.7 2.5E-18 8.6E-23 153.2 3.8 182 7-189 166-412 (461)
118 2ell_A Acidic leucine-rich nuc 99.7 3.5E-17 1.2E-21 126.1 9.6 132 33-168 23-163 (168)
119 4b8c_D Glucose-repressible alc 99.7 3.2E-18 1.1E-22 160.6 3.9 153 11-166 173-330 (727)
120 1z7x_W Ribonuclease inhibitor; 99.7 2.3E-17 7.8E-22 147.0 7.9 187 7-194 52-303 (461)
121 2wfh_A SLIT homolog 2 protein 99.7 5.9E-16 2E-20 122.0 12.7 123 13-137 12-136 (193)
122 2je0_A Acidic leucine-rich nuc 99.7 5.2E-16 1.8E-20 117.1 9.7 123 57-183 17-148 (149)
123 1w8a_A SLIT protein; signaling 99.6 1E-15 3.5E-20 120.6 11.6 122 14-137 11-136 (192)
124 1w8a_A SLIT protein; signaling 99.6 2.7E-15 9.1E-20 118.2 13.8 128 60-191 11-142 (192)
125 1a9n_A U2A', U2A'; complex (nu 99.6 4.8E-16 1.6E-20 120.7 9.0 104 82-188 43-153 (176)
126 2wfh_A SLIT homolog 2 protein 99.6 3.4E-15 1.2E-19 117.7 12.0 127 60-190 13-141 (193)
127 3sb4_A Hypothetical leucine ri 99.6 2E-15 6.9E-20 128.8 10.4 64 2-66 84-157 (329)
128 1ds9_A Outer arm dynein; leuci 99.6 2.1E-17 7.2E-22 130.9 -2.0 137 46-189 37-186 (198)
129 2o6r_A Variable lymphocyte rec 99.6 1.1E-14 3.9E-19 112.9 12.6 123 13-137 9-134 (177)
130 3sb4_A Hypothetical leucine ri 99.6 8.1E-16 2.8E-20 131.3 6.4 183 10-196 48-318 (329)
131 1ds9_A Outer arm dynein; leuci 99.6 6.5E-17 2.2E-21 128.0 -1.2 151 9-165 16-185 (198)
132 2o6r_A Variable lymphocyte rec 99.6 4E-14 1.4E-18 109.8 12.6 130 59-192 9-141 (177)
133 2r9u_A Variable lymphocyte rec 99.5 4.6E-14 1.6E-18 109.3 10.5 107 13-121 14-122 (174)
134 3g39_A Variable lymphocyte rec 99.5 8.3E-14 2.9E-18 107.4 10.6 106 12-119 10-117 (170)
135 3ogk_B Coronatine-insensitive 99.5 2.5E-14 8.5E-19 131.2 7.9 179 9-187 110-305 (592)
136 4fdw_A Leucine rich hypothetic 99.5 5E-13 1.7E-17 116.9 13.5 179 5-191 174-361 (401)
137 3ogk_B Coronatine-insensitive 99.5 4.2E-14 1.4E-18 129.7 6.5 152 7-160 160-350 (592)
138 3un9_A NLR family member X1; l 99.4 1.9E-14 6.6E-19 124.7 1.6 154 10-165 71-252 (372)
139 2r9u_A Variable lymphocyte rec 99.4 1.2E-12 3.9E-17 101.3 10.5 99 37-137 15-115 (174)
140 3g39_A Variable lymphocyte rec 99.4 2.2E-12 7.5E-17 99.4 11.2 106 83-192 11-119 (170)
141 4fdw_A Leucine rich hypothetic 99.4 1.4E-12 4.9E-17 114.0 11.3 172 2-183 127-308 (401)
142 2p1m_B Transport inhibitor res 99.4 1E-13 3.5E-18 127.1 3.0 180 6-185 100-324 (594)
143 2p1m_B Transport inhibitor res 99.4 1.8E-13 6.3E-18 125.4 3.7 186 2-189 57-303 (594)
144 2ifg_A High affinity nerve gro 99.3 1.5E-11 5.3E-16 105.3 10.2 108 9-118 7-117 (347)
145 2ifg_A High affinity nerve gro 99.2 1.2E-10 4.1E-15 99.8 10.1 104 85-190 12-118 (347)
146 3un9_A NLR family member X1; l 99.1 4E-11 1.4E-15 103.8 3.3 127 10-137 100-249 (372)
147 2ra8_A Uncharacterized protein 98.9 6.8E-10 2.3E-14 95.5 5.9 176 11-190 107-322 (362)
148 1io0_A Tropomodulin; LRR prote 98.9 1.4E-09 4.8E-14 84.7 6.8 109 28-137 30-161 (185)
149 2ra8_A Uncharacterized protein 98.9 4.3E-09 1.5E-13 90.6 7.3 174 8-186 136-341 (362)
150 1io0_A Tropomodulin; LRR prote 98.8 6.3E-09 2.2E-13 81.0 6.5 62 9-70 34-106 (185)
151 4gt6_A Cell surface protein; l 98.7 1.9E-07 6.5E-12 81.2 14.2 82 100-185 284-367 (394)
152 4fs7_A Uncharacterized protein 98.7 5.2E-08 1.8E-12 84.9 9.7 181 3-191 154-358 (394)
153 4fs7_A Uncharacterized protein 98.7 1E-07 3.5E-12 82.9 10.9 132 2-137 62-218 (394)
154 4gt6_A Cell surface protein; l 98.6 2.8E-07 9.7E-12 80.2 11.3 58 123-183 261-319 (394)
155 3rw6_A Nuclear RNA export fact 98.4 5.1E-07 1.8E-11 74.0 6.1 101 8-110 138-257 (267)
156 4h09_A Hypothetical leucine ri 98.2 8.6E-06 2.9E-10 70.2 11.4 186 3-195 150-352 (379)
157 4h09_A Hypothetical leucine ri 98.2 9.3E-06 3.2E-10 70.0 10.6 160 10-175 193-356 (379)
158 3rw6_A Nuclear RNA export fact 98.2 8.2E-07 2.8E-11 72.8 3.3 78 101-181 167-257 (267)
159 1pgv_A TMD-1, tropomodulin TMD 98.0 1.2E-05 4.2E-10 62.5 7.0 106 31-137 38-167 (197)
160 3e4g_A ATP synthase subunit S, 97.9 1.3E-05 4.4E-10 61.2 5.4 82 34-115 61-150 (176)
161 3e4g_A ATP synthase subunit S, 97.9 3.7E-06 1.3E-10 64.2 2.4 86 104-189 61-154 (176)
162 1pgv_A TMD-1, tropomodulin TMD 97.8 4.2E-05 1.4E-09 59.5 6.5 108 54-162 38-167 (197)
163 3rfe_A Platelet glycoprotein I 97.4 0.00037 1.3E-08 50.4 6.1 55 14-70 11-68 (130)
164 3rfe_A Platelet glycoprotein I 97.2 0.0005 1.7E-08 49.8 5.5 56 37-94 11-68 (130)
165 2lz0_A Uncharacterized protein 82.3 0.9 3.1E-05 30.7 2.7 46 21-67 6-53 (100)
166 2lz0_A Uncharacterized protein 79.2 3.5 0.00012 27.7 4.8 41 2-43 11-52 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.4e-26 Score=198.10 Aligned_cols=176 Identities=31% Similarity=0.379 Sum_probs=95.8
Q ss_pred CCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEccC
Q 023495 11 LNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINC 90 (281)
Q Consensus 11 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 90 (281)
.++++|++++|+++.+|..++++++|++|++++|.++.+|..+..+++|++|++++|.++.+|..+. .+++|++|++++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~-~l~~L~~L~L~~ 159 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIA-SLNRLRELSIRA 159 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGG-GCTTCCEEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHh-cCcCCCEEECCC
Confidence 4555555555555555555555555555555555555555555555555555555555555555443 555555555555
Q ss_pred CcC-cccCcccc---------CCCCCcEEEccCCcCCCChhhhhCCCCCCeeecccccccccCCCccccCCCcccEEEcC
Q 023495 91 NKI-VILPQSLT---------HLTSLRVLDARLNCLKSLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVS 160 (281)
Q Consensus 91 ~~l-~~l~~~~~---------~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~ 160 (281)
|.. ..+|..+. .+++|++|++++|.++.+|..++.+++|+.|++++| .+..+|..+..+++|+.|+++
T Consensus 160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N--~l~~l~~~l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS--PLSALGPAIHHLPKLEELDLR 237 (328)
T ss_dssp ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESS--CCCCCCGGGGGCTTCCEEECT
T ss_pred CCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCC--CCCcCchhhccCCCCCEEECc
Confidence 332 24444332 255555555555555555555555555555555555 333444455555555555555
Q ss_pred CCCCC-CCChhhhcCCCCCEEEccCCCCCC
Q 023495 161 YNKIT-TLPDSIGCLRKLQKLSLEGNPLVS 189 (281)
Q Consensus 161 ~n~i~-~~~~~~~~l~~L~~L~L~~n~l~~ 189 (281)
+|.+. .+|..+..+++|+.|++++|.+.+
T Consensus 238 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 267 (328)
T 4fcg_A 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLL 267 (328)
T ss_dssp TCTTCCBCCCCTTCCCCCCEEECTTCTTCC
T ss_pred CCcchhhhHHHhcCCCCCCEEECCCCCchh
Confidence 55444 445555555555555555554444
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=4.6e-26 Score=194.96 Aligned_cols=188 Identities=28% Similarity=0.375 Sum_probs=170.4
Q ss_pred CCChhHHhccCCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcC-cccChhHh--
Q 023495 1 MIPESLTARLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKL-RQLPDTIG-- 77 (281)
Q Consensus 1 ~ip~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l-~~~~~~~~-- 77 (281)
.||..+ .++++|++|++++|.++.+|..++++++|++|++++|.++.+|..+..+++|++|++++|.+ ..+|..+.
T Consensus 95 ~lp~~l-~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~ 173 (328)
T 4fcg_A 95 QFPDQA-FRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLAST 173 (328)
T ss_dssp SCCSCG-GGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE
T ss_pred hcChhh-hhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhc
Confidence 367775 56999999999999999999999999999999999999999999999999999999999654 46666543
Q ss_pred ------hcCCCCcEEEccCCcCcccCccccCCCCCcEEEccCCcCCCChhhhhCCCCCCeeecccccccccCCCccccCC
Q 023495 78 ------FELINLKTLSINCNKIVILPQSLTHLTSLRVLDARLNCLKSLPEDLENLINLEVLNISQNFQYLETLPYSIGLL 151 (281)
Q Consensus 78 ------~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 151 (281)
..+++|++|++++|.+..+|..+..+++|++|++++|.++.+|..+..+++|+.|++++| ...+.+|..+..+
T Consensus 174 ~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n-~~~~~~p~~~~~l 252 (328)
T 4fcg_A 174 DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC-TALRNYPPIFGGR 252 (328)
T ss_dssp C-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTC-TTCCBCCCCTTCC
T ss_pred cchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCC-cchhhhHHHhcCC
Confidence 249999999999999999999999999999999999999999999999999999999998 6788889999999
Q ss_pred CcccEEEcCCCCCC-CCChhhhcCCCCCEEEccCCCCCCC
Q 023495 152 MSLVELDVSYNKIT-TLPDSIGCLRKLQKLSLEGNPLVSP 190 (281)
Q Consensus 152 ~~L~~L~l~~n~i~-~~~~~~~~l~~L~~L~L~~n~l~~~ 190 (281)
++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+.
T Consensus 253 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~ 292 (328)
T 4fcg_A 253 APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292 (328)
T ss_dssp CCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred CCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence 99999999998776 7898999999999999999987664
No 3
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=6.4e-27 Score=198.22 Aligned_cols=182 Identities=25% Similarity=0.309 Sum_probs=118.2
Q ss_pred CCCcEEEccCCCCCccchh-ccCCCCCcEEEccCCCCCCc---chhhhcCccCceeeccCCcCcccChhHhhcCCCCcEE
Q 023495 11 LNVVVLDVHSNQLKCLPNS-IGCLSKLKVLDVSGNLLESL---PKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTL 86 (281)
Q Consensus 11 ~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~L~~n~l~~l---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 86 (281)
+++++|++++|+++.+|.. |.++++|++|++++|.++.+ +..+..+++|++|++++|.+..++..+. .+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~-~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL-GLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEE-TCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcC-CCCCCCEE
Confidence 4677777777777766543 56777777777777776644 4556667777777777777766665544 66777777
Q ss_pred EccCCcCcccCc--cccCCCCCcEEEccCCcCCC-ChhhhhCCCCCCeeeccccccccc-CCCccccCCCcccEEEcCCC
Q 023495 87 SINCNKIVILPQ--SLTHLTSLRVLDARLNCLKS-LPEDLENLINLEVLNISQNFQYLE-TLPYSIGLLMSLVELDVSYN 162 (281)
Q Consensus 87 ~l~~~~l~~l~~--~~~~l~~L~~L~l~~n~l~~-l~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~~L~~L~l~~n 162 (281)
++++|.+..++. .+..+++|++|++++|.+.. .+..+..+++|++|++++| ...+ ..|..+..+++|+.|++++|
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQC 185 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC-ccccccchhHHhhCcCCCEEECCCC
Confidence 777776665543 46666777777777776663 3344666677777777766 2222 35556666667777777777
Q ss_pred CCCCC-ChhhhcCCCCCEEEccCCCCCCCCHHH
Q 023495 163 KITTL-PDSIGCLRKLQKLSLEGNPLVSPPMDV 194 (281)
Q Consensus 163 ~i~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~ 194 (281)
.++.+ |..+..+++|+.|++++|.+++++...
T Consensus 186 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 218 (306)
T 2z66_A 186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 218 (306)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGG
T ss_pred CcCCcCHHHhcCCCCCCEEECCCCccCccChhh
Confidence 66654 456666677777777777766655443
No 4
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=4.7e-25 Score=184.90 Aligned_cols=185 Identities=25% Similarity=0.328 Sum_probs=147.6
Q ss_pred cCCCcEEEccCCCCCccc-hhccCCCCCcEEEccCCCCCCc-chhhhcCccCceeeccCCc-CcccChhHhhcCCCCcEE
Q 023495 10 LLNVVVLDVHSNQLKCLP-NSIGCLSKLKVLDVSGNLLESL-PKTIENCRSLEELNANFNK-LRQLPDTIGFELINLKTL 86 (281)
Q Consensus 10 ~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 86 (281)
.++|++|++++|+++.++ ..|..+++|++|++++|.++.+ +..+..+++|++|++++|. +..+++..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 467888888888888875 4578888888899888888877 6778888888888888886 777766655578888888
Q ss_pred EccCCcCccc-CccccCCCCCcEEEccCCcCCCChhh-hhCCCCCCeeecccccccccCCC-ccccCCCcccEEEcCCCC
Q 023495 87 SINCNKIVIL-PQSLTHLTSLRVLDARLNCLKSLPED-LENLINLEVLNISQNFQYLETLP-YSIGLLMSLVELDVSYNK 163 (281)
Q Consensus 87 ~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~L~l~~n~ 163 (281)
++++|.+..+ +..+..+++|++|++++|.++.++.. +..+++|+.|++++| .+..++ ..+..+++|+.|++++|.
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~ 188 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN--RISSVPERAFRGLHSLDRLLLHQNR 188 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC--cccccCHHHhcCccccCEEECCCCc
Confidence 8888888865 45678888888888888888877654 788888888888888 344444 357788888888888888
Q ss_pred CCCC-ChhhhcCCCCCEEEccCCCCCCCCHHHHH
Q 023495 164 ITTL-PDSIGCLRKLQKLSLEGNPLVSPPMDVVE 196 (281)
Q Consensus 164 i~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 196 (281)
++.+ |..+..+++|+.|++++|.++++++..+.
T Consensus 189 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 222 (285)
T 1ozn_A 189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 222 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHT
T ss_pred ccccCHhHccCcccccEeeCCCCcCCcCCHHHcc
Confidence 8855 67788888888888888888888776554
No 5
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=3.5e-24 Score=179.62 Aligned_cols=188 Identities=29% Similarity=0.363 Sum_probs=167.6
Q ss_pred CChhHHhccCCCcEEEccCCCCCcc-chhccCCCCCcEEEccCCC-CCCc-chhhhcCccCceeeccCCcCcccChhHhh
Q 023495 2 IPESLTARLLNVVVLDVHSNQLKCL-PNSIGCLSKLKVLDVSGNL-LESL-PKTIENCRSLEELNANFNKLRQLPDTIGF 78 (281)
Q Consensus 2 ip~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~L~~n~-l~~l-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 78 (281)
+|...|.++++|++|++++|.++.+ +..+.++++|++|++++|. ++.+ +..+..+++|++|++++|.++.+++..+.
T Consensus 47 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 126 (285)
T 1ozn_A 47 VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR 126 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred cCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhh
Confidence 4555678999999999999999988 6789999999999999997 8887 67889999999999999999988777666
Q ss_pred cCCCCcEEEccCCcCcccCc-cccCCCCCcEEEccCCcCCCChh-hhhCCCCCCeeecccccccccCCCccccCCCcccE
Q 023495 79 ELINLKTLSINCNKIVILPQ-SLTHLTSLRVLDARLNCLKSLPE-DLENLINLEVLNISQNFQYLETLPYSIGLLMSLVE 156 (281)
Q Consensus 79 ~l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 156 (281)
.+++|++|++++|.+..++. .+..+++|++|++++|.++.++. .+..+++|+.|++++| ...+..|..+..+++|+.
T Consensus 127 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~ 205 (285)
T 1ozn_A 127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMT 205 (285)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCE
T ss_pred CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCC-cccccCHhHccCcccccE
Confidence 89999999999999997765 48899999999999999998776 4889999999999999 455555888999999999
Q ss_pred EEcCCCCCCCCC-hhhhcCCCCCEEEccCCCCCCC
Q 023495 157 LDVSYNKITTLP-DSIGCLRKLQKLSLEGNPLVSP 190 (281)
Q Consensus 157 L~l~~n~i~~~~-~~~~~l~~L~~L~L~~n~l~~~ 190 (281)
|++++|.++.++ ..+..+++|+.|++++|++...
T Consensus 206 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 206 LYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp EECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred eeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 999999999887 5689999999999999999764
No 6
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=5.8e-24 Score=186.00 Aligned_cols=231 Identities=20% Similarity=0.185 Sum_probs=163.0
Q ss_pred CChhHHhccCCCcEEEccCCCCCccc-hhccCCCCCcEEEccCCCCCCc-chhhhcCccCceeeccCCcCcccChhHhhc
Q 023495 2 IPESLTARLLNVVVLDVHSNQLKCLP-NSIGCLSKLKVLDVSGNLLESL-PKTIENCRSLEELNANFNKLRQLPDTIGFE 79 (281)
Q Consensus 2 ip~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 79 (281)
+|..++.++++|++|++++|.++.++ ..|..+++|++|++++|.++.+ |..+..+++|++|++++|.++.+|..++..
T Consensus 60 l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 139 (390)
T 3o6n_A 60 LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 139 (390)
T ss_dssp ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcC
Confidence 67788888999999999999988875 4788899999999999988877 455788889999999999998888887667
Q ss_pred CCCCcEEEccCCcCcccC-ccccCCCCCcEEEccCCcCCCCh--------------------------------------
Q 023495 80 LINLKTLSINCNKIVILP-QSLTHLTSLRVLDARLNCLKSLP-------------------------------------- 120 (281)
Q Consensus 80 l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~l~~l~-------------------------------------- 120 (281)
+++|++|++++|.+..++ ..+..+++|++|++++|.++.++
T Consensus 140 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~ 219 (390)
T 3o6n_A 140 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINV 219 (390)
T ss_dssp CTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCE
T ss_pred CCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeee
Confidence 888999999888887654 45777888888888887765332
Q ss_pred ----------------------hhhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCCCCCChhhhcCCCCC
Q 023495 121 ----------------------EDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKITTLPDSIGCLRKLQ 178 (281)
Q Consensus 121 ----------------------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~l~~L~ 178 (281)
..+..+++|+.|++++| ...+..|..+..+++|+.|++++|.++.+|..+..+++|+
T Consensus 220 ~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~ 298 (390)
T 3o6n_A 220 VRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLK 298 (390)
T ss_dssp EECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCC
T ss_pred ccccccccccEEECCCCCCcccHHHcCCCCccEEECCCC-cCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCC
Confidence 12445566777777777 3344446667777888888888888877776667778888
Q ss_pred EEEccCCCCCCCCHHHHHhHHHHHHHHHHhhhcCCCCCCCCcchhhchhhcccccccccc
Q 023495 179 KLSLEGNPLVSPPMDVVEQGLSAVKGYLSEKMNNDHKSPKKKSWVGKLVKYGTFNGALRN 238 (281)
Q Consensus 179 ~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 238 (281)
.|++++|.+..++.... .++.++.+ ..............+..++.+....+.+.+
T Consensus 299 ~L~L~~n~l~~~~~~~~--~l~~L~~L---~L~~N~i~~~~~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 299 VLDLSHNHLLHVERNQP--QFDRLENL---YLDHNSIVTLKLSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp EEECCSSCCCCCGGGHH--HHTTCSEE---ECCSSCCCCCCCCTTCCCSEEECCSSCEEH
T ss_pred EEECCCCcceecCcccc--ccCcCCEE---ECCCCccceeCchhhccCCEEEcCCCCccc
Confidence 88888888887765432 12211111 111111122224445566666666665554
No 7
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.91 E-value=2.3e-23 Score=178.24 Aligned_cols=185 Identities=23% Similarity=0.337 Sum_probs=111.0
Q ss_pred CChhHHhccCCCcEEEccCCCCCcc-chhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcC
Q 023495 2 IPESLTARLLNVVVLDVHSNQLKCL-PNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFEL 80 (281)
Q Consensus 2 ip~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 80 (281)
+|...|.++++|++|++++|+++.+ |..+.++++|++|++++|.++.+|..+. ++|++|++++|.++.++...+..+
T Consensus 67 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l 144 (330)
T 1xku_A 67 IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGL 144 (330)
T ss_dssp BCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTC
T ss_pred eChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCC
Confidence 3444456777777777777777766 5667777777777777777776655442 566666666666666666655567
Q ss_pred CCCcEEEccCCcCc---ccCccccCCCCCcEEEccCCcCCCChhhhhCCCCCCeeecccccccccCCCccccCCCcccEE
Q 023495 81 INLKTLSINCNKIV---ILPQSLTHLTSLRVLDARLNCLKSLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVEL 157 (281)
Q Consensus 81 ~~L~~L~l~~~~l~---~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 157 (281)
++|++|++++|.+. ..+..+..+++|+.|++++|.++.+|..+. ++|+.|++++| ...+..+..+..+++|+.|
T Consensus 145 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L 221 (330)
T 1xku_A 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGN-KITKVDAASLKGLNNLAKL 221 (330)
T ss_dssp TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTS-CCCEECTGGGTTCTTCCEE
T ss_pred ccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCC-cCCccCHHHhcCCCCCCEE
Confidence 77777777777765 234456666666666666666665544332 45555555555 2222233445555555555
Q ss_pred EcCCCCCCCCC-hhhhcCCCCCEEEccCCCCCCCC
Q 023495 158 DVSYNKITTLP-DSIGCLRKLQKLSLEGNPLVSPP 191 (281)
Q Consensus 158 ~l~~n~i~~~~-~~~~~l~~L~~L~L~~n~l~~~~ 191 (281)
++++|.++.++ ..+..+++|+.|++++|.++.++
T Consensus 222 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp 256 (330)
T 1xku_A 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP 256 (330)
T ss_dssp ECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCC
T ss_pred ECCCCcCceeChhhccCCCCCCEEECCCCcCccCC
Confidence 55555555433 34555555555555555555444
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=4.3e-25 Score=187.73 Aligned_cols=178 Identities=22% Similarity=0.349 Sum_probs=79.8
Q ss_pred hccCCCcEEEccC-CCCC-ccchhccCCCCCcEEEccCCCCC-CcchhhhcCccCceeeccCCcCc-ccChhHhhcCCCC
Q 023495 8 ARLLNVVVLDVHS-NQLK-CLPNSIGCLSKLKVLDVSGNLLE-SLPKTIENCRSLEELNANFNKLR-QLPDTIGFELINL 83 (281)
Q Consensus 8 ~~~~~L~~L~l~~-~~l~-~l~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L 83 (281)
.++++|++|++++ |++. .+|..++++++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+. .+++|
T Consensus 73 ~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L 151 (313)
T 1ogq_A 73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS-SLPNL 151 (313)
T ss_dssp GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG-GCTTC
T ss_pred hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh-cCCCC
Confidence 4444444444442 4433 33444444444444444444444 33444444444444444444444 2232222 44444
Q ss_pred cEEEccCCcCc-ccCccccCCC-CCcEEEccCCcCC-CChhhhhCCCCCCeeecccccccccCCCccccCCCcccEEEcC
Q 023495 84 KTLSINCNKIV-ILPQSLTHLT-SLRVLDARLNCLK-SLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVS 160 (281)
Q Consensus 84 ~~L~l~~~~l~-~l~~~~~~l~-~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~ 160 (281)
++|++++|.+. .+|..+..++ +|+.|++++|.++ .+|..+..++ |+.|++++| ...+..|..+..+++|+.|+++
T Consensus 152 ~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~ 229 (313)
T 1ogq_A 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN-MLEGDASVLFGSDKNTQKIHLA 229 (313)
T ss_dssp CEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS-EEEECCGGGCCTTSCCSEEECC
T ss_pred CeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC-cccCcCCHHHhcCCCCCEEECC
Confidence 44444444444 4444444444 4444444444444 3344444443 444444444 2233334444444444444444
Q ss_pred CCCCCCCChhhhcCCCCCEEEccCCCCC
Q 023495 161 YNKITTLPDSIGCLRKLQKLSLEGNPLV 188 (281)
Q Consensus 161 ~n~i~~~~~~~~~l~~L~~L~L~~n~l~ 188 (281)
+|.++..+..+..+++|+.|++++|.++
T Consensus 230 ~N~l~~~~~~~~~l~~L~~L~Ls~N~l~ 257 (313)
T 1ogq_A 230 KNSLAFDLGKVGLSKNLNGLDLRNNRIY 257 (313)
T ss_dssp SSEECCBGGGCCCCTTCCEEECCSSCCE
T ss_pred CCceeeecCcccccCCCCEEECcCCccc
Confidence 4444433333444444444444444444
No 9
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=4.3e-24 Score=181.53 Aligned_cols=183 Identities=25% Similarity=0.406 Sum_probs=163.7
Q ss_pred CChhHHhccCCCcEEEccCCCCC-ccchhccCCCCCcEEEccCCCCC-CcchhhhcCccCceeeccCCcCc-ccChhHhh
Q 023495 2 IPESLTARLLNVVVLDVHSNQLK-CLPNSIGCLSKLKVLDVSGNLLE-SLPKTIENCRSLEELNANFNKLR-QLPDTIGF 78 (281)
Q Consensus 2 ip~~~~~~~~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~ 78 (281)
+|..+ .++++|++|++++|+++ .+|..+.++++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+.
T Consensus 93 ~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~- 170 (313)
T 1ogq_A 93 IPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG- 170 (313)
T ss_dssp CCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-
T ss_pred CChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh-
Confidence 67764 89999999999999998 67888999999999999999998 67899999999999999999998 7777776
Q ss_pred cCC-CCcEEEccCCcCc-ccCccccCCCCCcEEEccCCcCC-CChhhhhCCCCCCeeecccccccccCCCccccCCCccc
Q 023495 79 ELI-NLKTLSINCNKIV-ILPQSLTHLTSLRVLDARLNCLK-SLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLV 155 (281)
Q Consensus 79 ~l~-~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 155 (281)
.++ +|++|++++|.+. .+|..+..+. |+.|++++|.++ ..+..+..+++|+.|++++| ...+..+ .+..+++|+
T Consensus 171 ~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~l~~L~ 247 (313)
T 1ogq_A 171 SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN-SLAFDLG-KVGLSKNLN 247 (313)
T ss_dssp CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSS-EECCBGG-GCCCCTTCC
T ss_pred hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCC-ceeeecC-cccccCCCC
Confidence 777 9999999999998 7788888887 999999999998 66778999999999999999 3444444 478899999
Q ss_pred EEEcCCCCCC-CCChhhhcCCCCCEEEccCCCCCC
Q 023495 156 ELDVSYNKIT-TLPDSIGCLRKLQKLSLEGNPLVS 189 (281)
Q Consensus 156 ~L~l~~n~i~-~~~~~~~~l~~L~~L~L~~n~l~~ 189 (281)
+|++++|.++ .+|..+..+++|+.|++++|.+++
T Consensus 248 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 282 (313)
T 1ogq_A 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282 (313)
T ss_dssp EEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred EEECcCCcccCcCChHHhcCcCCCEEECcCCcccc
Confidence 9999999999 789999999999999999999974
No 10
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=3e-23 Score=172.64 Aligned_cols=179 Identities=31% Similarity=0.459 Sum_probs=139.7
Q ss_pred CCCcEEEccCCCCCccch-hccCCCCCcEEEccCCCCCCcchh-hhcCccCceeeccCCcCcccChhHhhcCCCCcEEEc
Q 023495 11 LNVVVLDVHSNQLKCLPN-SIGCLSKLKVLDVSGNLLESLPKT-IENCRSLEELNANFNKLRQLPDTIGFELINLKTLSI 88 (281)
Q Consensus 11 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 88 (281)
..+++|++++|+++.++. .|.++++|++|++++|.++.++.. |..+++|++|++++|.++.++...+..+++|++|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 468888888888887754 678888888888888888877544 567888888888888888888777667888888888
Q ss_pred cCCcCcccCc-cccCCCCCcEEEccCCcCCCChhh-hhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCCCC
Q 023495 89 NCNKIVILPQ-SLTHLTSLRVLDARLNCLKSLPED-LENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKITT 166 (281)
Q Consensus 89 ~~~~l~~l~~-~~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 166 (281)
++|.+..++. .+..+++|++|++++|.++.++.. +..+++|+.|++++| ......+..+..+++|+.|++++|.++.
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQLKR 195 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCCcCCc
Confidence 8888886654 467888888888888888877664 778888888888888 3333333457778888888888888887
Q ss_pred CCh-hhhcCCCCCEEEccCCCCCCC
Q 023495 167 LPD-SIGCLRKLQKLSLEGNPLVSP 190 (281)
Q Consensus 167 ~~~-~~~~l~~L~~L~L~~n~l~~~ 190 (281)
+|. .+..+++|+.|++++|++...
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 196 VPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CCHHHhccccCCCEEEecCCCeeCC
Confidence 764 477788888888888887554
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=1.1e-23 Score=194.10 Aligned_cols=231 Identities=20% Similarity=0.185 Sum_probs=168.3
Q ss_pred CChhHHhccCCCcEEEccCCCCCccc-hhccCCCCCcEEEccCCCCCCcc-hhhhcCccCceeeccCCcCcccChhHhhc
Q 023495 2 IPESLTARLLNVVVLDVHSNQLKCLP-NSIGCLSKLKVLDVSGNLLESLP-KTIENCRSLEELNANFNKLRQLPDTIGFE 79 (281)
Q Consensus 2 ip~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 79 (281)
+|..++.++++|++|++++|.++.++ ..|+.+++|++|++++|.++.++ ..|..+++|++|++++|.++.+|+.++..
T Consensus 66 lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 145 (597)
T 3oja_B 66 LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 145 (597)
T ss_dssp ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhcc
Confidence 67888889999999999999999875 47889999999999999998774 45788999999999999999888887668
Q ss_pred CCCCcEEEccCCcCcccC-ccccCCCCCcEEEccCCcCCCCh--------------------------------------
Q 023495 80 LINLKTLSINCNKIVILP-QSLTHLTSLRVLDARLNCLKSLP-------------------------------------- 120 (281)
Q Consensus 80 l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~l~~l~-------------------------------------- 120 (281)
+++|++|++++|.+..++ ..+..+++|++|++++|.++.++
T Consensus 146 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~ 225 (597)
T 3oja_B 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINV 225 (597)
T ss_dssp CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCE
T ss_pred CCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccc
Confidence 899999999999888654 45788888888888888766432
Q ss_pred ----------------------hhhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCCCCCChhhhcCCCCC
Q 023495 121 ----------------------EDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKITTLPDSIGCLRKLQ 178 (281)
Q Consensus 121 ----------------------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~l~~L~ 178 (281)
..+..+++|+.|++++| ...+..|..+..+++|+.|++++|.++.+|..+..+++|+
T Consensus 226 ~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~ 304 (597)
T 3oja_B 226 VRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLK 304 (597)
T ss_dssp EECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCC
T ss_pred cccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCC-ccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCc
Confidence 22455677777777777 4445556777888888888888888887777777788888
Q ss_pred EEEccCCCCCCCCHHHHHhHHHHHHHHHHhhhcCCCCCCCCcchhhchhhcccccccccc
Q 023495 179 KLSLEGNPLVSPPMDVVEQGLSAVKGYLSEKMNNDHKSPKKKSWVGKLVKYGTFNGALRN 238 (281)
Q Consensus 179 ~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 238 (281)
.|+|++|.+..++..+. .++.+..+ ..............+..++.+....+.+.+
T Consensus 305 ~L~Ls~N~l~~i~~~~~--~l~~L~~L---~L~~N~l~~~~~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 305 VLDLSHNHLLHVERNQP--QFDRLENL---YLDHNSIVTLKLSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp EEECCSSCCCCCGGGHH--HHTTCSEE---ECCSSCCCCCCCCTTCCCSEEECCSSCEEH
T ss_pred EEECCCCCCCccCcccc--cCCCCCEE---ECCCCCCCCcChhhcCCCCEEEeeCCCCCC
Confidence 88888888887765432 22222111 111112222234455566666666665544
No 12
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.91 E-value=1.9e-23 Score=178.88 Aligned_cols=185 Identities=25% Similarity=0.311 Sum_probs=106.5
Q ss_pred HHhccCCCcEEEccCCCCCcc-chhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCc
Q 023495 6 LTARLLNVVVLDVHSNQLKCL-PNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLK 84 (281)
Q Consensus 6 ~~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 84 (281)
.|.++++|++|++++|+++.+ |..++++++|++|++++|.++.+|..+. ++|++|++++|.+..++...+..+++|+
T Consensus 73 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 150 (332)
T 2ft3_A 73 DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMN 150 (332)
T ss_dssp TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCC
T ss_pred HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCC
Confidence 346666666666666666655 4556666666666666666666654443 5666666666666666665555677777
Q ss_pred EEEccCCcCcc---cCccccCC--------------------CCCcEEEccCCcCCCCh-hhhhCCCCCCeeeccccccc
Q 023495 85 TLSINCNKIVI---LPQSLTHL--------------------TSLRVLDARLNCLKSLP-EDLENLINLEVLNISQNFQY 140 (281)
Q Consensus 85 ~L~l~~~~l~~---l~~~~~~l--------------------~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~n~~~ 140 (281)
+|++++|.+.. .+..+..+ ++|++|++++|.++.++ ..+..+++|+.|++++| ..
T Consensus 151 ~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N-~l 229 (332)
T 2ft3_A 151 CIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN-QI 229 (332)
T ss_dssp EEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS-CC
T ss_pred EEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cC
Confidence 77777776642 22333333 23444444444444333 23555556666666655 22
Q ss_pred ccCCCccccCCCcccEEEcCCCCCCCCChhhhcCCCCCEEEccCCCCCCCCHH
Q 023495 141 LETLPYSIGLLMSLVELDVSYNKITTLPDSIGCLRKLQKLSLEGNPLVSPPMD 193 (281)
Q Consensus 141 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 193 (281)
.+..+..+..+++|+.|++++|.++.+|..+..+++|+.|++++|.++.++..
T Consensus 230 ~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~ 282 (332)
T 2ft3_A 230 RMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVN 282 (332)
T ss_dssp CCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTT
T ss_pred CcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChh
Confidence 23333345556666666666666666665566666666666666666655443
No 13
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=2.4e-23 Score=175.04 Aligned_cols=183 Identities=27% Similarity=0.345 Sum_probs=109.3
Q ss_pred HhccCCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCc-chhhhcCccCceeeccCCcCcccChhHhhcCCCCcE
Q 023495 7 TARLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESL-PKTIENCRSLEELNANFNKLRQLPDTIGFELINLKT 85 (281)
Q Consensus 7 ~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 85 (281)
+.++++++.+++++++++.+|..+. +.++.|++++|.++.+ +..+..+++|++|++++|.++.++.. ..+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCE
Confidence 3556666666666666666665443 4566666666666655 44566666666666666666655543 25666666
Q ss_pred EEccCCcCcccCccccCCCCCcEEEccCCcCCCChh-hhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCC
Q 023495 86 LSINCNKIVILPQSLTHLTSLRVLDARLNCLKSLPE-DLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKI 164 (281)
Q Consensus 86 L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i 164 (281)
|++++|.+..+|..+..+++|+.|++++|+++.++. .+..+++|+.|++++| ......+..+..+++|+.|++++|++
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCcC
Confidence 666666666666656666666666666666665543 3566666666666666 22222223345566666666666666
Q ss_pred CCCCh-hhhcCCCCCEEEccCCCCCCCCHHH
Q 023495 165 TTLPD-SIGCLRKLQKLSLEGNPLVSPPMDV 194 (281)
Q Consensus 165 ~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~ 194 (281)
+.+|. .+..+++|+.|+|++|.++.++..+
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~ 191 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENSLYTIPKGF 191 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CccCHHHhcCcCCCCEEECCCCcCCccChhh
Confidence 65553 3455666666666666666555443
No 14
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.90 E-value=1.9e-23 Score=185.69 Aligned_cols=191 Identities=23% Similarity=0.355 Sum_probs=135.4
Q ss_pred ChhHHhccCCCcEEEccCCCCCccc-hhccCCCCCcEEEccCCCCCCcch-hhhcCccCceeeccCCcCcccChhHhhcC
Q 023495 3 PESLTARLLNVVVLDVHSNQLKCLP-NSIGCLSKLKVLDVSGNLLESLPK-TIENCRSLEELNANFNKLRQLPDTIGFEL 80 (281)
Q Consensus 3 p~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 80 (281)
+...|.++++|++|++++|+++.++ ..|.++++|++|++++|.++.++. .|..+++|++|++++|.++.++...+..+
T Consensus 80 ~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l 159 (440)
T 3zyj_A 80 KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI 159 (440)
T ss_dssp CTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTC
T ss_pred CHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhC
Confidence 3344577777888888887777764 567777788888888887777753 56777778888888887777777666677
Q ss_pred CCCcEEEccC-CcCcccCc-cccCCCCCcEEEccCCcCCCChhhhhCCCCCCeeecccccccccCCCccccCCCcccEEE
Q 023495 81 INLKTLSINC-NKIVILPQ-SLTHLTSLRVLDARLNCLKSLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELD 158 (281)
Q Consensus 81 ~~L~~L~l~~-~~l~~l~~-~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 158 (281)
++|++|++++ +.+..++. .+..+++|++|++++|.++.+| .+..+++|+.|++++| ...+..+..+..+++|+.|+
T Consensus 160 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 237 (440)
T 3zyj_A 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLW 237 (440)
T ss_dssp TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEE
T ss_pred cccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCC-ccCccChhhhccCccCCEEE
Confidence 7777777766 34445544 4677777888888887777775 3667777777888777 34444466677777777777
Q ss_pred cCCCCCCCC-ChhhhcCCCCCEEEccCCCCCCCCHHHH
Q 023495 159 VSYNKITTL-PDSIGCLRKLQKLSLEGNPLVSPPMDVV 195 (281)
Q Consensus 159 l~~n~i~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 195 (281)
+++|.++.+ +..+..+++|+.|+|++|.++.++...+
T Consensus 238 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 275 (440)
T 3zyj_A 238 MIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF 275 (440)
T ss_dssp CTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred CCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHh
Confidence 777777755 4566777777777777777777766554
No 15
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.90 E-value=1.6e-24 Score=183.44 Aligned_cols=194 Identities=27% Similarity=0.316 Sum_probs=169.1
Q ss_pred CCChhHHhccCCCcEEEccCCCCCcc---chhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccCh-hH
Q 023495 1 MIPESLTARLLNVVVLDVHSNQLKCL---PNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPD-TI 76 (281)
Q Consensus 1 ~ip~~~~~~~~~L~~L~l~~~~l~~l---~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~-~~ 76 (281)
.+|..+|.++++|++|++++|+++.+ +..+..+++|++|++++|.++.+|..+..+++|++|++++|.++.++. ..
T Consensus 42 ~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 121 (306)
T 2z66_A 42 SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 121 (306)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTT
T ss_pred ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchh
Confidence 36778789999999999999999865 567778999999999999999998889999999999999999998876 44
Q ss_pred hhcCCCCcEEEccCCcCccc-CccccCCCCCcEEEccCCcCCC--ChhhhhCCCCCCeeecccccccccCCCccccCCCc
Q 023495 77 GFELINLKTLSINCNKIVIL-PQSLTHLTSLRVLDARLNCLKS--LPEDLENLINLEVLNISQNFQYLETLPYSIGLLMS 153 (281)
Q Consensus 77 ~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~l~~--l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 153 (281)
+..+++|++|++++|.+... +..+..+++|++|++++|.++. +|..+..+++|+.|++++| ...+..|..+..+++
T Consensus 122 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~ 200 (306)
T 2z66_A 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSS 200 (306)
T ss_dssp TTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTT
T ss_pred hhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC-CcCCcCHHHhcCCCC
Confidence 55899999999999998844 5668899999999999999985 6778999999999999999 445555778899999
Q ss_pred ccEEEcCCCCCCCCC-hhhhcCCCCCEEEccCCCCCCCCHHHH
Q 023495 154 LVELDVSYNKITTLP-DSIGCLRKLQKLSLEGNPLVSPPMDVV 195 (281)
Q Consensus 154 L~~L~l~~n~i~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~ 195 (281)
|+.|++++|.++.++ ..+..+++|+.|++++|.+.+.++..+
T Consensus 201 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 201 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp CCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred CCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence 999999999999876 478899999999999999988765443
No 16
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=5e-23 Score=173.09 Aligned_cols=182 Identities=27% Similarity=0.323 Sum_probs=160.7
Q ss_pred CChhHHhccCCCcEEEccCCCCCcc-chhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcC
Q 023495 2 IPESLTARLLNVVVLDVHSNQLKCL-PNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFEL 80 (281)
Q Consensus 2 ip~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 80 (281)
||..+ .+++++|++++|.++.+ +..|..+++|++|++++|.++.++.. ..+++|++|++++|.++.+|..+. .+
T Consensus 25 ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~-~l 99 (290)
T 1p9a_G 25 LPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQ-TL 99 (290)
T ss_dssp CCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCSSCCCCTT-TC
T ss_pred CCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCCcCchhhc-cC
Confidence 56655 36899999999999988 56799999999999999999988654 789999999999999999988665 89
Q ss_pred CCCcEEEccCCcCcccC-ccccCCCCCcEEEccCCcCCCChhh-hhCCCCCCeeecccccccccCCCc-cccCCCcccEE
Q 023495 81 INLKTLSINCNKIVILP-QSLTHLTSLRVLDARLNCLKSLPED-LENLINLEVLNISQNFQYLETLPY-SIGLLMSLVEL 157 (281)
Q Consensus 81 ~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~~~L~~L 157 (281)
++|++|++++|.++.++ ..+..+++|++|++++|+++.++.. +..+++|+.|++++| .+..+|. .+..+++|+.|
T Consensus 100 ~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N--~l~~l~~~~~~~l~~L~~L 177 (290)
T 1p9a_G 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN--NLTELPAGLLNGLENLDTL 177 (290)
T ss_dssp TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS--CCSCCCTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC--cCCccCHHHhcCcCCCCEE
Confidence 99999999999999876 4689999999999999999988765 788999999999999 4555654 46789999999
Q ss_pred EcCCCCCCCCChhhhcCCCCCEEEccCCCCCCC
Q 023495 158 DVSYNKITTLPDSIGCLRKLQKLSLEGNPLVSP 190 (281)
Q Consensus 158 ~l~~n~i~~~~~~~~~l~~L~~L~L~~n~l~~~ 190 (281)
++++|.++.+|..+..+++|+.|+|++|++...
T Consensus 178 ~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 178 LLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp ECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred ECCCCcCCccChhhcccccCCeEEeCCCCccCc
Confidence 999999999999998999999999999998653
No 17
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.90 E-value=2.3e-23 Score=185.69 Aligned_cols=188 Identities=26% Similarity=0.354 Sum_probs=115.2
Q ss_pred hHHhccCCCcEEEccCCCCCccc-hhccCCCCCcEEEccCCCCCCcch-hhhcCccCceeeccCCcCcccChhHhhcCCC
Q 023495 5 SLTARLLNVVVLDVHSNQLKCLP-NSIGCLSKLKVLDVSGNLLESLPK-TIENCRSLEELNANFNKLRQLPDTIGFELIN 82 (281)
Q Consensus 5 ~~~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 82 (281)
..|.++++|++|++++|+++.++ ..|.++++|++|+|++|.++.++. .+..+++|++|++++|.++.++...+..+++
T Consensus 93 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 172 (452)
T 3zyi_A 93 DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPS 172 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTT
T ss_pred HHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCc
Confidence 34567777777777777777663 456677777777777777776643 3666777777777777777666655556666
Q ss_pred CcEEEccC-CcCcccCc-cccCCCCCcEEEccCCcCCCChhhhhCCCCCCeeecccccccccCCCccccCCCcccEEEcC
Q 023495 83 LKTLSINC-NKIVILPQ-SLTHLTSLRVLDARLNCLKSLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVS 160 (281)
Q Consensus 83 L~~L~l~~-~~l~~l~~-~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~ 160 (281)
|+.|++++ +.+..++. .+..+++|+.|++++|.++.+| .+..+++|+.|++++| ...+..|..+..+++|+.|+++
T Consensus 173 L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~ 250 (452)
T 3zyi_A 173 LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGN-HFPEIRPGSFHGLSSLKKLWVM 250 (452)
T ss_dssp CCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTS-CCSEECGGGGTTCTTCCEEECT
T ss_pred ccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCC-cCcccCcccccCccCCCEEEeC
Confidence 66666655 33444433 3556666666666666666554 3555666666666666 3333334555666666666666
Q ss_pred CCCCCCC-ChhhhcCCCCCEEEccCCCCCCCCHHH
Q 023495 161 YNKITTL-PDSIGCLRKLQKLSLEGNPLVSPPMDV 194 (281)
Q Consensus 161 ~n~i~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~ 194 (281)
+|.++.+ +..+..+++|+.|+|++|.++.++...
T Consensus 251 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 285 (452)
T 3zyi_A 251 NSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL 285 (452)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTS
T ss_pred CCcCceECHHHhcCCCCCCEEECCCCcCCccChHH
Confidence 6666543 345556666666666666666555443
No 18
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.90 E-value=5.2e-24 Score=189.24 Aligned_cols=231 Identities=25% Similarity=0.326 Sum_probs=182.5
Q ss_pred CChhHHhccCCCcEEEccCCCCCccc-hhccCCCCCcEEEccCCCCCCc-chhhhcCccCceeeccCCcCcccChhHhhc
Q 023495 2 IPESLTARLLNVVVLDVHSNQLKCLP-NSIGCLSKLKVLDVSGNLLESL-PKTIENCRSLEELNANFNKLRQLPDTIGFE 79 (281)
Q Consensus 2 ip~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 79 (281)
||..+ .+++++|++++|+++.++ ..|.++++|++|+|++|.++.+ +..|..+++|++|+|++|.++.++...+..
T Consensus 58 iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 134 (440)
T 3zyj_A 58 VPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVY 134 (440)
T ss_dssp CCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCS
T ss_pred CCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhc
Confidence 56655 267899999999999885 6799999999999999999987 477899999999999999999999877778
Q ss_pred CCCCcEEEccCCcCcccCc-cccCCCCCcEEEccC-CcCCCChh-hhhCCCCCCeeecccccccccCCCccccCCCcccE
Q 023495 80 LINLKTLSINCNKIVILPQ-SLTHLTSLRVLDARL-NCLKSLPE-DLENLINLEVLNISQNFQYLETLPYSIGLLMSLVE 156 (281)
Q Consensus 80 l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~-n~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 156 (281)
+++|++|++++|.+..++. .+..+++|+.|++++ +.+..++. .+.++++|+.|++++| .+..+| .+..+++|+.
T Consensus 135 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n--~l~~~~-~~~~l~~L~~ 211 (440)
T 3zyj_A 135 LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC--NLREIP-NLTPLIKLDE 211 (440)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS--CCSSCC-CCTTCSSCCE
T ss_pred cccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC--cCcccc-ccCCCcccCE
Confidence 9999999999999997765 688999999999999 45566655 5889999999999999 556666 5888999999
Q ss_pred EEcCCCCCCCC-ChhhhcCCCCCEEEccCCCCCCCCHHHHHhHHHHHHH-HHHhhhcCCCCCCCCcchhhchhhcccccc
Q 023495 157 LDVSYNKITTL-PDSIGCLRKLQKLSLEGNPLVSPPMDVVEQGLSAVKG-YLSEKMNNDHKSPKKKSWVGKLVKYGTFNG 234 (281)
Q Consensus 157 L~l~~n~i~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 234 (281)
|++++|.++.+ |..+..+++|+.|++++|.++.+++..+... +.++. .+..+ ......+.....+..++.+....+
T Consensus 212 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL-QSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTC-TTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSS
T ss_pred EECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCC-CCCCEEECCCC-CCCccChhHhccccCCCEEEcCCC
Confidence 99999999976 6889999999999999999998877655422 22221 12222 111222233344556666777777
Q ss_pred ccccCC
Q 023495 235 ALRNHR 240 (281)
Q Consensus 235 ~~~~~~ 240 (281)
.+.|..
T Consensus 290 p~~CdC 295 (440)
T 3zyj_A 290 PWNCNC 295 (440)
T ss_dssp CEECSS
T ss_pred CccCCC
Confidence 666653
No 19
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=1.2e-22 Score=172.27 Aligned_cols=174 Identities=25% Similarity=0.367 Sum_probs=120.8
Q ss_pred hccCCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEE
Q 023495 8 ARLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLS 87 (281)
Q Consensus 8 ~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 87 (281)
.++++|++|++++|++..++ .+..+++|++|++++|.++.++. +..+++|++|++++|.++.++ .+ ..+++|++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~-~~l~~L~~L~ 113 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AI-AGLQSIKTLD 113 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GG-TTCTTCCEEE
T ss_pred HHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hh-cCCCCCCEEE
Confidence 35667777777777777665 46677777777777777777655 677777777777777777664 23 2677777777
Q ss_pred ccCCcCcccCccccCCCCCcEEEccCCcCCCChhhhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCCCCC
Q 023495 88 INCNKIVILPQSLTHLTSLRVLDARLNCLKSLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKITTL 167 (281)
Q Consensus 88 l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~ 167 (281)
+++|.+..++. +..+++|+.|++++|.++.++. +..+++|+.|++++| .+..++. +..+++|+.|++++|.++.+
T Consensus 114 l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n--~l~~~~~-l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 114 LTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA--QVSDLTP-LANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp CTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS--CCCCCGG-GTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCC--cCCCChh-hcCCCCCCEEECCCCccCcC
Confidence 77777776643 6677777777777777776654 667777777777777 3344443 66677777777777777766
Q ss_pred ChhhhcCCCCCEEEccCCCCCCCC
Q 023495 168 PDSIGCLRKLQKLSLEGNPLVSPP 191 (281)
Q Consensus 168 ~~~~~~l~~L~~L~L~~n~l~~~~ 191 (281)
+. +..+++|+.|++++|.+++.+
T Consensus 189 ~~-l~~l~~L~~L~L~~N~l~~~~ 211 (308)
T 1h6u_A 189 SP-LASLPNLIEVHLKNNQISDVS 211 (308)
T ss_dssp GG-GGGCTTCCEEECTTSCCCBCG
T ss_pred hh-hcCCCCCCEEEccCCccCccc
Confidence 54 667777777777777777665
No 20
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=2.2e-23 Score=173.92 Aligned_cols=182 Identities=26% Similarity=0.311 Sum_probs=129.3
Q ss_pred CCCcEEEccCCCCCccch-hccCCCCCcEEEccCCCCCCcc-hhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEc
Q 023495 11 LNVVVLDVHSNQLKCLPN-SIGCLSKLKVLDVSGNLLESLP-KTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSI 88 (281)
Q Consensus 11 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 88 (281)
++|++|++++|+++.++. .|.++++|++|++++|.++.++ ..+..+++|++|++++|.++.++...+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 468888888888887754 6778888888888888888764 46777888888888888888777665557888888888
Q ss_pred cCCcCcccCc-cccCCCCCcEEEccCCcCCC--ChhhhhCCCCCCeeecccccccccCCCccccCCCccc----EEEcCC
Q 023495 89 NCNKIVILPQ-SLTHLTSLRVLDARLNCLKS--LPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLV----ELDVSY 161 (281)
Q Consensus 89 ~~~~l~~l~~-~~~~l~~L~~L~l~~n~l~~--l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~----~L~l~~ 161 (281)
++|.+..++. .+..+++|++|++++|.++. +|..+..+++|+.|++++| ...+..+..+..+.+|+ .|++++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhhhhccccceeeecCC
Confidence 8888776644 57778888888888888875 5677888888888888887 33333333444444444 666666
Q ss_pred CCCCCCChhhhcCCCCCEEEccCCCCCCCCHH
Q 023495 162 NKITTLPDSIGCLRKLQKLSLEGNPLVSPPMD 193 (281)
Q Consensus 162 n~i~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 193 (281)
|.++.++.......+|+.|++++|.+++++..
T Consensus 187 n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 218 (276)
T 2z62_A 187 NPMNFIQPGAFKEIRLKELALDTNQLKSVPDG 218 (276)
T ss_dssp SCCCEECTTSSCSCCEEEEECCSSCCSCCCTT
T ss_pred CcccccCccccCCCcccEEECCCCceeecCHh
Confidence 66665554444444666666666666665543
No 21
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.90 E-value=1e-23 Score=188.05 Aligned_cols=231 Identities=22% Similarity=0.283 Sum_probs=182.0
Q ss_pred CChhHHhccCCCcEEEccCCCCCcc-chhccCCCCCcEEEccCCCCCCc-chhhhcCccCceeeccCCcCcccChhHhhc
Q 023495 2 IPESLTARLLNVVVLDVHSNQLKCL-PNSIGCLSKLKVLDVSGNLLESL-PKTIENCRSLEELNANFNKLRQLPDTIGFE 79 (281)
Q Consensus 2 ip~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 79 (281)
||..+ .+++++|++++|+++.+ +..|.++++|++|++++|.++.+ +..|..+++|++|+|++|.++.++...+..
T Consensus 69 iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 145 (452)
T 3zyi_A 69 VPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEY 145 (452)
T ss_dssp CCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSS
T ss_pred cCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcc
Confidence 55554 36899999999999988 56799999999999999999987 477899999999999999999999887778
Q ss_pred CCCCcEEEccCCcCcccCc-cccCCCCCcEEEccC-CcCCCChh-hhhCCCCCCeeecccccccccCCCccccCCCcccE
Q 023495 80 LINLKTLSINCNKIVILPQ-SLTHLTSLRVLDARL-NCLKSLPE-DLENLINLEVLNISQNFQYLETLPYSIGLLMSLVE 156 (281)
Q Consensus 80 l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~-n~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 156 (281)
+++|++|++++|.+..++. .+..+++|+.|++++ +.++.++. .+..+++|+.|++++| .+..+| .+..+++|+.
T Consensus 146 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n--~l~~~~-~~~~l~~L~~ 222 (452)
T 3zyi_A 146 LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC--NIKDMP-NLTPLVGLEE 222 (452)
T ss_dssp CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS--CCSSCC-CCTTCTTCCE
T ss_pred cCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC--cccccc-cccccccccE
Confidence 9999999999999997765 688999999999998 55666665 4889999999999999 455565 5888999999
Q ss_pred EEcCCCCCCCC-ChhhhcCCCCCEEEccCCCCCCCCHHHHHhHHHHHHH-HHHhhhcCCCCCCCCcchhhchhhcccccc
Q 023495 157 LDVSYNKITTL-PDSIGCLRKLQKLSLEGNPLVSPPMDVVEQGLSAVKG-YLSEKMNNDHKSPKKKSWVGKLVKYGTFNG 234 (281)
Q Consensus 157 L~l~~n~i~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 234 (281)
|++++|.++.+ |..+.++++|+.|++++|.+..+++..+.. ++.++. .+..+ ......+.....+..++.+....+
T Consensus 223 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 223 LEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG-LASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp EECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSS
T ss_pred EECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcC-CCCCCEEECCCC-cCCccChHHhccccCCCEEEccCC
Confidence 99999999976 678999999999999999999887765542 222221 11111 111222233344556666766666
Q ss_pred ccccCC
Q 023495 235 ALRNHR 240 (281)
Q Consensus 235 ~~~~~~ 240 (281)
.+.|..
T Consensus 301 p~~CdC 306 (452)
T 3zyi_A 301 PWNCDC 306 (452)
T ss_dssp CEECST
T ss_pred CcCCCC
Confidence 666553
No 22
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=2e-22 Score=190.63 Aligned_cols=192 Identities=29% Similarity=0.453 Sum_probs=146.1
Q ss_pred CChhHHhccCCCcEEEccCCCCC-ccchhccCCCCCcEEEccCCCCC-CcchhhhcCccCceeeccCCcCcc-cChhHhh
Q 023495 2 IPESLTARLLNVVVLDVHSNQLK-CLPNSIGCLSKLKVLDVSGNLLE-SLPKTIENCRSLEELNANFNKLRQ-LPDTIGF 78 (281)
Q Consensus 2 ip~~~~~~~~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~ 78 (281)
+|.. ++++++|++|++++|+++ .+|..++.+++|++|++++|.+. .+|..+..+++|++|++++|.+.. +|..+ .
T Consensus 410 ~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-~ 487 (768)
T 3rgz_A 410 IPPT-LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL-S 487 (768)
T ss_dssp CCGG-GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG-G
T ss_pred cCHH-HhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHH-h
Confidence 4555 478888888888888887 45777888888888888888887 557788888888888888888874 44444 4
Q ss_pred cCCCCcEEEccCCcCc-ccCccccCCCCCcEEEccCCcCC-CChhhhhCCCCCCeeecccccccccCCCcc---------
Q 023495 79 ELINLKTLSINCNKIV-ILPQSLTHLTSLRVLDARLNCLK-SLPEDLENLINLEVLNISQNFQYLETLPYS--------- 147 (281)
Q Consensus 79 ~l~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~--------- 147 (281)
.+++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..+..+++|+.|++++| ...+.+|..
T Consensus 488 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~g~ip~~~~~~~~~~~ 566 (768)
T 3rgz_A 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN-LFNGTIPAAMFKQSGKIA 566 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS-EEESBCCGGGGTTTTCBC
T ss_pred cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC-ccCCcCChHHhcccchhh
Confidence 7888888888888887 67777888888888888888887 67777888888888888877 344344432
Q ss_pred -------------------------------------------------------------ccCCCcccEEEcCCCCCC-
Q 023495 148 -------------------------------------------------------------IGLLMSLVELDVSYNKIT- 165 (281)
Q Consensus 148 -------------------------------------------------------------~~~~~~L~~L~l~~n~i~- 165 (281)
+..+++|+.||+++|+++
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g 646 (768)
T 3rgz_A 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 646 (768)
T ss_dssp CSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBS
T ss_pred hhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccc
Confidence 333566788888888887
Q ss_pred CCChhhhcCCCCCEEEccCCCCCCCCHHHHH
Q 023495 166 TLPDSIGCLRKLQKLSLEGNPLVSPPMDVVE 196 (281)
Q Consensus 166 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 196 (281)
.+|..++.+++|+.|+|++|.+++..+..+.
T Consensus 647 ~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~ 677 (768)
T 3rgz_A 647 YIPKEIGSMPYLFILNLGHNDISGSIPDEVG 677 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred cCCHHHhccccCCEEeCcCCccCCCCChHHh
Confidence 6788888888888888888888865555443
No 23
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=5.4e-23 Score=171.57 Aligned_cols=188 Identities=27% Similarity=0.306 Sum_probs=160.0
Q ss_pred CChhHHhccCCCcEEEccCCCCCccch-hccCCCCCcEEEccCCCCCCcc-hhhhcCccCceeeccCCcCcccChhHhhc
Q 023495 2 IPESLTARLLNVVVLDVHSNQLKCLPN-SIGCLSKLKVLDVSGNLLESLP-KTIENCRSLEELNANFNKLRQLPDTIGFE 79 (281)
Q Consensus 2 ip~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 79 (281)
+|...|.++++|++|++++|+++.++. .+.++++|++|++++|.++.++ ..+..+++|++|++++|.+..++...+..
T Consensus 43 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 122 (276)
T 2z62_A 43 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122 (276)
T ss_dssp ECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTT
T ss_pred cCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhccc
Confidence 345457899999999999999998854 6899999999999999999774 67899999999999999999888755568
Q ss_pred CCCCcEEEccCCcCcc--cCccccCCCCCcEEEccCCcCCCChh-hhhCCCCCC----eeecccccccccCCCccccCCC
Q 023495 80 LINLKTLSINCNKIVI--LPQSLTHLTSLRVLDARLNCLKSLPE-DLENLINLE----VLNISQNFQYLETLPYSIGLLM 152 (281)
Q Consensus 80 l~~L~~L~l~~~~l~~--l~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~----~L~l~~n~~~~~~~~~~~~~~~ 152 (281)
+++|++|++++|.+.. +|..+..+++|++|++++|.++.++. .+..+++|+ .|++++| .+..++.......
T Consensus 123 l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n--~l~~~~~~~~~~~ 200 (276)
T 2z62_A 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN--PMNFIQPGAFKEI 200 (276)
T ss_dssp CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS--CCCEECTTSSCSC
T ss_pred CCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC--cccccCccccCCC
Confidence 9999999999999985 68889999999999999999997653 566666666 8999999 4555555555556
Q ss_pred cccEEEcCCCCCCCCCh-hhhcCCCCCEEEccCCCCCCCC
Q 023495 153 SLVELDVSYNKITTLPD-SIGCLRKLQKLSLEGNPLVSPP 191 (281)
Q Consensus 153 ~L~~L~l~~n~i~~~~~-~~~~l~~L~~L~L~~n~l~~~~ 191 (281)
+|+.|++++|.++.+|. .+..+++|+.|++++|++....
T Consensus 201 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 201 RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred cccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 89999999999998875 4689999999999999998643
No 24
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=2.8e-22 Score=166.99 Aligned_cols=182 Identities=27% Similarity=0.358 Sum_probs=159.5
Q ss_pred hccCCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEE
Q 023495 8 ARLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLS 87 (281)
Q Consensus 8 ~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 87 (281)
..+++|+.|++++|.++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++.+++..+..+++|++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 56889999999999998875 4888999999999999999874 788999999999999999999988776899999999
Q ss_pred ccCCcCcccCc-cccCCCCCcEEEccCCcCCCChhh-hhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCCC
Q 023495 88 INCNKIVILPQ-SLTHLTSLRVLDARLNCLKSLPED-LENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKIT 165 (281)
Q Consensus 88 l~~~~l~~l~~-~~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~ 165 (281)
+++|.+..++. .+..+++|++|++++|.++.++.. +..+++|+.|++++| ...+..+..+..+++|+.|++++|.++
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCcCC
Confidence 99999997765 478999999999999999987664 789999999999999 444444455789999999999999999
Q ss_pred CCC-hhhhcCCCCCEEEccCCCCCCCCH
Q 023495 166 TLP-DSIGCLRKLQKLSLEGNPLVSPPM 192 (281)
Q Consensus 166 ~~~-~~~~~l~~L~~L~L~~n~l~~~~~ 192 (281)
.++ ..+..+++|+.|++++|++....+
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 776 457999999999999999876543
No 25
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=1.1e-24 Score=202.06 Aligned_cols=189 Identities=19% Similarity=0.309 Sum_probs=106.8
Q ss_pred CChhHHhccCCCcEEEccCCCCCc------------------cchhcc--CCCCCcEEEccCCCCC-CcchhhhcCccCc
Q 023495 2 IPESLTARLLNVVVLDVHSNQLKC------------------LPNSIG--CLSKLKVLDVSGNLLE-SLPKTIENCRSLE 60 (281)
Q Consensus 2 ip~~~~~~~~~L~~L~l~~~~l~~------------------l~~~~~--~l~~L~~L~L~~n~l~-~l~~~~~~l~~L~ 60 (281)
||.. ++++++|++|++++|.++. +|..++ ++++|++|++++|.+. .+|..+.++++|+
T Consensus 198 ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCHH-HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 4554 3666666666666666665 666665 6666666666666554 4466666666666
Q ss_pred eeeccCCc-Ccc--cChhHhhcC------CCCcEEEccCCcCcccCc--cccCCCCCcEEEccCCcCC-CChhhhhCCCC
Q 023495 61 ELNANFNK-LRQ--LPDTIGFEL------INLKTLSINCNKIVILPQ--SLTHLTSLRVLDARLNCLK-SLPEDLENLIN 128 (281)
Q Consensus 61 ~L~L~~n~-l~~--~~~~~~~~l------~~L~~L~l~~~~l~~l~~--~~~~l~~L~~L~l~~n~l~-~l~~~~~~l~~ 128 (281)
+|++++|. ++. +|..+. .+ ++|++|++++|.+..+|. .+..+++|++|++++|.++ .+| .+..+++
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~-~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~ 354 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQ-ALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIK 354 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHH-HHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEE
T ss_pred EEECcCCCCCccccchHHHH-hhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCC
Confidence 66666665 552 454443 32 556666666666555555 5555556666666555555 554 4444555
Q ss_pred CCeeecccccccccCCCccccCCCc-ccEEEcCCCCCCCCC--------------------------hhhh-------cC
Q 023495 129 LEVLNISQNFQYLETLPYSIGLLMS-LVELDVSYNKITTLP--------------------------DSIG-------CL 174 (281)
Q Consensus 129 L~~L~l~~n~~~~~~~~~~~~~~~~-L~~L~l~~n~i~~~~--------------------------~~~~-------~l 174 (281)
|+.|++++| .+..+|..+..+++ |+.|++++|.++.+| ..+. .+
T Consensus 355 L~~L~L~~N--~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~ 432 (636)
T 4eco_A 355 LASLNLAYN--QITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432 (636)
T ss_dssp ESEEECCSS--EEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC
T ss_pred CCEEECCCC--ccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccC
Confidence 555555554 22244444444444 444444444444444 3344 45
Q ss_pred CCCCEEEccCCCCCCCCHHHH
Q 023495 175 RKLQKLSLEGNPLVSPPMDVV 195 (281)
Q Consensus 175 ~~L~~L~L~~n~l~~~~~~~~ 195 (281)
++|+.|++++|.++.++...+
T Consensus 433 ~~L~~L~Ls~N~l~~lp~~~~ 453 (636)
T 4eco_A 433 INVSSINLSNNQISKFPKELF 453 (636)
T ss_dssp CCEEEEECCSSCCCSCCTHHH
T ss_pred CCCCEEECcCCccCcCCHHHH
Confidence 566677777777766665544
No 26
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=1.1e-22 Score=177.82 Aligned_cols=188 Identities=24% Similarity=0.267 Sum_probs=144.3
Q ss_pred ChhHHhccCCCcEEEccCCCCCccc-hhccCCCCCcEEEccCCCCCCcchh-hhcCccCceeeccCCcCcccChhHhhcC
Q 023495 3 PESLTARLLNVVVLDVHSNQLKCLP-NSIGCLSKLKVLDVSGNLLESLPKT-IENCRSLEELNANFNKLRQLPDTIGFEL 80 (281)
Q Consensus 3 p~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l 80 (281)
|...|.++++|++|++++|.++.++ ..++++++|++|++++|.++.+|.. +..+++|++|++++|.++.+++..+..+
T Consensus 85 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 164 (390)
T 3o6n_A 85 DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 164 (390)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSC
T ss_pred ChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCC
Confidence 4444577777777777777777664 4467777777777777777777654 4667777777777777776666555466
Q ss_pred CCCcEEEccCCcCcccC------------------------------------------------------------ccc
Q 023495 81 INLKTLSINCNKIVILP------------------------------------------------------------QSL 100 (281)
Q Consensus 81 ~~L~~L~l~~~~l~~l~------------------------------------------------------------~~~ 100 (281)
++|++|++++|.+..++ ..+
T Consensus 165 ~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l 244 (390)
T 3o6n_A 165 TSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWL 244 (390)
T ss_dssp TTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGG
T ss_pred CCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHH
Confidence 77777777666554221 124
Q ss_pred cCCCCCcEEEccCCcCCCC-hhhhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCCCCCChhhhcCCCCCE
Q 023495 101 THLTSLRVLDARLNCLKSL-PEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKITTLPDSIGCLRKLQK 179 (281)
Q Consensus 101 ~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~l~~L~~ 179 (281)
..+++|++|++++|.++.+ |..+..+++|+.|++++| ....++..+..+++|+.|++++|.++.+|..+..+++|+.
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~ 322 (390)
T 3o6n_A 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN--RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLEN 322 (390)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS--CCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSE
T ss_pred cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC--cCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCE
Confidence 5678899999999999865 667999999999999999 5556677777899999999999999999988999999999
Q ss_pred EEccCCCCCCCCH
Q 023495 180 LSLEGNPLVSPPM 192 (281)
Q Consensus 180 L~L~~n~l~~~~~ 192 (281)
|++++|.++.++.
T Consensus 323 L~L~~N~i~~~~~ 335 (390)
T 3o6n_A 323 LYLDHNSIVTLKL 335 (390)
T ss_dssp EECCSSCCCCCCC
T ss_pred EECCCCccceeCc
Confidence 9999999988863
No 27
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=2.4e-22 Score=170.31 Aligned_cols=177 Identities=24% Similarity=0.371 Sum_probs=158.9
Q ss_pred HhccCCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEE
Q 023495 7 TARLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTL 86 (281)
Q Consensus 7 ~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 86 (281)
+..+++|++|++++|+++.++. +..+++|++|++++|.++.++ .+..+++|++|++++|.++.++. + ..+++|++|
T Consensus 59 ~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~-l-~~l~~L~~L 134 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTP-L-AGLSNLQVL 134 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGG-G-TTCTTCCEE
T ss_pred hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCchh-h-cCCCCCCEE
Confidence 5789999999999999999877 999999999999999999885 68899999999999999998875 3 489999999
Q ss_pred EccCCcCcccCccccCCCCCcEEEccCCcCCCChhhhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCCCC
Q 023495 87 SINCNKIVILPQSLTHLTSLRVLDARLNCLKSLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKITT 166 (281)
Q Consensus 87 ~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 166 (281)
++++|.+..++. +..+++|+.|++++|.++.++. +..+++|+.|++++| .+..++. +..+++|+.|++++|.++.
T Consensus 135 ~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n--~l~~~~~-l~~l~~L~~L~L~~N~l~~ 209 (308)
T 1h6u_A 135 YLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDN--KISDISP-LASLPNLIEVHLKNNQISD 209 (308)
T ss_dssp ECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS--CCCCCGG-GGGCTTCCEEECTTSCCCB
T ss_pred ECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCC--ccCcChh-hcCCCCCCEEEccCCccCc
Confidence 999999997765 8899999999999999998876 899999999999999 4555553 8889999999999999998
Q ss_pred CChhhhcCCCCCEEEccCCCCCCCCHH
Q 023495 167 LPDSIGCLRKLQKLSLEGNPLVSPPMD 193 (281)
Q Consensus 167 ~~~~~~~l~~L~~L~L~~n~l~~~~~~ 193 (281)
++. +..+++|+.|++++|+++..+..
T Consensus 210 ~~~-l~~l~~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 210 VSP-LANTSNLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp CGG-GTTCTTCCEEEEEEEEEECCCEE
T ss_pred ccc-ccCCCCCCEEEccCCeeecCCee
Confidence 874 89999999999999999886643
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=2.3e-23 Score=186.85 Aligned_cols=157 Identities=26% Similarity=0.328 Sum_probs=96.6
Q ss_pred hHHhccCCCcEEEccCCCCCcc-chhccCCCCCcEEEccCCCCCCcch-hhhcCccCceeeccCCcCcccChhHhhcCCC
Q 023495 5 SLTARLLNVVVLDVHSNQLKCL-PNSIGCLSKLKVLDVSGNLLESLPK-TIENCRSLEELNANFNKLRQLPDTIGFELIN 82 (281)
Q Consensus 5 ~~~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 82 (281)
..|.++++|++|++++|.++.+ |..|.++++|++|++++|.++.+|. .|..+++|++|++++|.+..+++..+..+++
T Consensus 50 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 129 (477)
T 2id5_A 50 DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129 (477)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHcccccc
Confidence 3456667777777777766665 4566667777777777777666643 3566677777777777766665555556677
Q ss_pred CcEEEccCCcCccc-CccccCCCCCcEEEccCCcCCCChh-hhhCCCCCCeeecccccccccCCCccccCCCcccEEEcC
Q 023495 83 LKTLSINCNKIVIL-PQSLTHLTSLRVLDARLNCLKSLPE-DLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVS 160 (281)
Q Consensus 83 L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~ 160 (281)
|++|++++|.+..+ +..+..+++|+.|++++|.++.++. .+.++++|+.|++++| ...+..+..+..+++|+.|+++
T Consensus 130 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~ 208 (477)
T 2id5_A 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL-NINAIRDYSFKRLYRLKVLEIS 208 (477)
T ss_dssp CCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC-CCCEECTTCSCSCTTCCEEEEE
T ss_pred CCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCC-cCcEeChhhcccCcccceeeCC
Confidence 77777777766644 3456667777777777777766554 3666666766666666 2222223334444444444444
Q ss_pred CC
Q 023495 161 YN 162 (281)
Q Consensus 161 ~n 162 (281)
+|
T Consensus 209 ~~ 210 (477)
T 2id5_A 209 HW 210 (477)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 29
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=1.1e-22 Score=192.51 Aligned_cols=191 Identities=29% Similarity=0.417 Sum_probs=123.4
Q ss_pred CChhHHhccCCCcEEEccCCCCC-ccchhccCCCCCcEEEccCCCCC-CcchhhhcCccCceeeccCCcCc-ccChhHhh
Q 023495 2 IPESLTARLLNVVVLDVHSNQLK-CLPNSIGCLSKLKVLDVSGNLLE-SLPKTIENCRSLEELNANFNKLR-QLPDTIGF 78 (281)
Q Consensus 2 ip~~~~~~~~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~ 78 (281)
+|.. +.++++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+.
T Consensus 434 ~p~~-l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~- 511 (768)
T 3rgz_A 434 IPSS-LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG- 511 (768)
T ss_dssp CCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-
T ss_pred ccHH-HhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh-
Confidence 3444 367777777777777776 45666777777777777777776 44666777777777777777776 3444443
Q ss_pred cCCCCcEEEccCCcCc-ccCccccCCCCCcEEEccCCcCC-CChhhh---------------------------------
Q 023495 79 ELINLKTLSINCNKIV-ILPQSLTHLTSLRVLDARLNCLK-SLPEDL--------------------------------- 123 (281)
Q Consensus 79 ~l~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~n~l~-~l~~~~--------------------------------- 123 (281)
.+++|+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+
T Consensus 512 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (768)
T 3rgz_A 512 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAG 591 (768)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSE
T ss_pred cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccc
Confidence 6777777777777766 56666666777777777666554 333322
Q ss_pred -------------------------------------hCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCCC-
Q 023495 124 -------------------------------------ENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKIT- 165 (281)
Q Consensus 124 -------------------------------------~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~- 165 (281)
..+++|+.|++++| ...+.+|..++.+++|+.|+|++|.++
T Consensus 592 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N-~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 670 (768)
T 3rgz_A 592 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN-MLSGYIPKEIGSMPYLFILNLGHNDISG 670 (768)
T ss_dssp EEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS-CCBSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred cccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCC-cccccCCHHHhccccCCEEeCcCCccCC
Confidence 22345666666666 455666666666666666666666666
Q ss_pred CCChhhhcCCCCCEEEccCCCCCCCCHHHH
Q 023495 166 TLPDSIGCLRKLQKLSLEGNPLVSPPMDVV 195 (281)
Q Consensus 166 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 195 (281)
.+|..++.+++|+.|+|++|++++..+..+
T Consensus 671 ~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l 700 (768)
T 3rgz_A 671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCEECCCGGG
T ss_pred CCChHHhCCCCCCEEECCCCcccCcCChHH
Confidence 566666666666666666666665444433
No 30
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=2.5e-23 Score=197.51 Aligned_cols=166 Identities=19% Similarity=0.276 Sum_probs=104.1
Q ss_pred CChhHHhccCCCcEEEccCCCCCc------------------cchhcc--CCCCCcEEEccCCCCC-CcchhhhcCccCc
Q 023495 2 IPESLTARLLNVVVLDVHSNQLKC------------------LPNSIG--CLSKLKVLDVSGNLLE-SLPKTIENCRSLE 60 (281)
Q Consensus 2 ip~~~~~~~~~L~~L~l~~~~l~~------------------l~~~~~--~l~~L~~L~L~~n~l~-~l~~~~~~l~~L~ 60 (281)
||.. ++++++|++|+|++|+++. +|..++ ++++|++|++++|.+. .+|..+..+++|+
T Consensus 440 IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred hhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 5655 3677777777777777776 666655 7777777777777644 5566677777777
Q ss_pred eeeccCCc-Ccc--cChhHh------hcCCCCcEEEccCCcCcccCc--cccCCCCCcEEEccCCcCCCChhhhhCCCCC
Q 023495 61 ELNANFNK-LRQ--LPDTIG------FELINLKTLSINCNKIVILPQ--SLTHLTSLRVLDARLNCLKSLPEDLENLINL 129 (281)
Q Consensus 61 ~L~L~~n~-l~~--~~~~~~------~~l~~L~~L~l~~~~l~~l~~--~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L 129 (281)
+|++++|. ++. +|..+. ..+++|+.|++++|.+..+|. .+..+++|+.|++++|.++.+| .++.+++|
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L 597 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKL 597 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEE
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcc
Confidence 77777776 553 554433 122366666666666666666 5666666666666666666665 56666666
Q ss_pred CeeecccccccccCCCccccCCCc-ccEEEcCCCCCCCCChhh
Q 023495 130 EVLNISQNFQYLETLPYSIGLLMS-LVELDVSYNKITTLPDSI 171 (281)
Q Consensus 130 ~~L~l~~n~~~~~~~~~~~~~~~~-L~~L~l~~n~i~~~~~~~ 171 (281)
+.|++++| .+..+|..+..+++ |+.|++++|.++.+|..+
T Consensus 598 ~~L~Ls~N--~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~ 638 (876)
T 4ecn_A 598 TDLKLDYN--QIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIF 638 (876)
T ss_dssp SEEECCSS--CCSCCCTTSCEECTTCCEEECCSSCCCSCCSCC
T ss_pred eEEECcCC--ccccchHHHhhccccCCEEECcCCCCCcCchhh
Confidence 66666666 23355555666655 666666666655555443
No 31
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=1.3e-23 Score=194.92 Aligned_cols=191 Identities=18% Similarity=0.300 Sum_probs=134.9
Q ss_pred CChhHHh--ccCCCcEEEccCCCCC-ccchhccCCCCCcEEEccCCC-CCC--cchhhhcC------ccCceeeccCCcC
Q 023495 2 IPESLTA--RLLNVVVLDVHSNQLK-CLPNSIGCLSKLKVLDVSGNL-LES--LPKTIENC------RSLEELNANFNKL 69 (281)
Q Consensus 2 ip~~~~~--~~~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~L~~n~-l~~--l~~~~~~l------~~L~~L~L~~n~l 69 (281)
+|+.+ + ++++|++|++++|++. .+|..++++++|++|++++|. ++. +|..+..+ ++|++|++++|.+
T Consensus 239 ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 239 KTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp TTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred Cchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence 56664 4 7888888888888765 567778888888888888887 774 67777665 7888888888888
Q ss_pred cccCh--hHhhcCCCCcEEEccCCcCc-ccCccccCCCCCcEEEccCCcCCCChhhhhCCC-------------------
Q 023495 70 RQLPD--TIGFELINLKTLSINCNKIV-ILPQSLTHLTSLRVLDARLNCLKSLPEDLENLI------------------- 127 (281)
Q Consensus 70 ~~~~~--~~~~~l~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~------------------- 127 (281)
+.+|. .+. .+++|++|++++|.+. .+| .+..+++|+.|++++|.++.+|..+..++
T Consensus 318 ~~ip~~~~l~-~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~ 395 (636)
T 4eco_A 318 KTFPVETSLQ-KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNI 395 (636)
T ss_dssp SSCCCHHHHT-TCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSC
T ss_pred CccCchhhhc-cCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchh
Confidence 87776 444 7777777777777776 555 45555555555555554444444444444
Q ss_pred -------CCCeeecccccccccCCCcccc-------CCCcccEEEcCCCCCCCCChh-hhcCCCCCEEEccCCCCCCCCH
Q 023495 128 -------NLEVLNISQNFQYLETLPYSIG-------LLMSLVELDVSYNKITTLPDS-IGCLRKLQKLSLEGNPLVSPPM 192 (281)
Q Consensus 128 -------~L~~L~l~~n~~~~~~~~~~~~-------~~~~L~~L~l~~n~i~~~~~~-~~~l~~L~~L~L~~n~l~~~~~ 192 (281)
+|+.|++++| ...+..|..+. .+++|+.|++++|.++.+|.. +..+++|+.|++++|.++.++.
T Consensus 396 ~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~ 474 (636)
T 4eco_A 396 FDAKSVSVMSAIDFSYN-EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPK 474 (636)
T ss_dssp CCTTCSSCEEEEECCSS-CTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCS
T ss_pred hhhcccCccCEEECcCC-cCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCH
Confidence 4555555555 33444444555 566899999999999988865 4569999999999999998876
Q ss_pred HHHH
Q 023495 193 DVVE 196 (281)
Q Consensus 193 ~~~~ 196 (281)
..+.
T Consensus 475 ~~~~ 478 (636)
T 4eco_A 475 NSLK 478 (636)
T ss_dssp SSSE
T ss_pred HHhc
Confidence 6543
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=1.1e-23 Score=188.96 Aligned_cols=188 Identities=29% Similarity=0.375 Sum_probs=131.6
Q ss_pred hHHhccCCCcEEEccCCCCCccch-hccCCCCCcEEEccCCCCCCc-chhhhcCccCceeeccCCcCcccChhHhhcCCC
Q 023495 5 SLTARLLNVVVLDVHSNQLKCLPN-SIGCLSKLKVLDVSGNLLESL-PKTIENCRSLEELNANFNKLRQLPDTIGFELIN 82 (281)
Q Consensus 5 ~~~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 82 (281)
..|.++++|++|++++|+++.++. .|.++++|++|++++|.+..+ +..+..+++|++|++++|.+..+++..+..+++
T Consensus 74 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 153 (477)
T 2id5_A 74 GAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS 153 (477)
T ss_dssp TTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTT
T ss_pred hhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCC
Confidence 346888999999999999988865 478889999999999988866 567788888888888888888777666667888
Q ss_pred CcEEEccCCcCcccCc-cccCCCCCcEEEccCCcCCCChh-hhhCCCCCCeeecccccccccCCCc--------------
Q 023495 83 LKTLSINCNKIVILPQ-SLTHLTSLRVLDARLNCLKSLPE-DLENLINLEVLNISQNFQYLETLPY-------------- 146 (281)
Q Consensus 83 L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~-------------- 146 (281)
|++|++++|.+..++. .+..+++|+.|++++|.+..++. .+..+++|+.|++++| ...+.++.
T Consensus 154 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~ 232 (477)
T 2id5_A 154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW-PYLDTMTPNCLYGLNLTSLSIT 232 (477)
T ss_dssp CCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECC-TTCCEECTTTTTTCCCSEEEEE
T ss_pred CCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCC-ccccccCcccccCccccEEECc
Confidence 8888888888876654 47778888888888887775543 4666666666666665 23333333
Q ss_pred ----------cccCCCcccEEEcCCCCCCCCC-hhhhcCCCCCEEEccCCCCCCCCHH
Q 023495 147 ----------SIGLLMSLVELDVSYNKITTLP-DSIGCLRKLQKLSLEGNPLVSPPMD 193 (281)
Q Consensus 147 ----------~~~~~~~L~~L~l~~n~i~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~ 193 (281)
.+..+++|+.|++++|.++.++ ..+..+++|+.|+|++|.+.++++.
T Consensus 233 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 290 (477)
T 2id5_A 233 HCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY 290 (477)
T ss_dssp SSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTT
T ss_pred CCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHH
Confidence 3445555666666666555443 3455556666666666665554443
No 33
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=5.8e-23 Score=167.80 Aligned_cols=180 Identities=20% Similarity=0.249 Sum_probs=157.3
Q ss_pred CCCcEEEccCCCCCccch-hccCCCCCcEEEccCCC-CCCcch-hhhcCccCceeeccC-CcCcccChhHhhcCCCCcEE
Q 023495 11 LNVVVLDVHSNQLKCLPN-SIGCLSKLKVLDVSGNL-LESLPK-TIENCRSLEELNANF-NKLRQLPDTIGFELINLKTL 86 (281)
Q Consensus 11 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~L~~n~-l~~l~~-~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L 86 (281)
.++++|++++|+++.++. .|.++++|++|++++|. ++.++. .|..+++|++|++++ |.++.+++..+..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 489999999999999965 68999999999999997 998854 788999999999998 99999998777789999999
Q ss_pred EccCCcCcccCccccCCCCCc---EEEccCC-cCCCChhh-hhCCCCCC-eeecccccccccCCCccccCCCcccEEEcC
Q 023495 87 SINCNKIVILPQSLTHLTSLR---VLDARLN-CLKSLPED-LENLINLE-VLNISQNFQYLETLPYSIGLLMSLVELDVS 160 (281)
Q Consensus 87 ~l~~~~l~~l~~~~~~l~~L~---~L~l~~n-~l~~l~~~-~~~l~~L~-~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~ 160 (281)
++++|.+..+|. +..+++|+ .|++++| .++.++.. +..+++|+ .|++++| .+..+|......++|+.|+++
T Consensus 111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n--~l~~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN--GFTSVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC--CCCEECTTTTTTCEEEEEECT
T ss_pred eCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC--CCcccCHhhcCCCCCCEEEcC
Confidence 999999998887 78888888 9999999 99988764 88999999 9999999 445666554444899999999
Q ss_pred CCC-CCCCC-hhhhcC-CCCCEEEccCCCCCCCCHH
Q 023495 161 YNK-ITTLP-DSIGCL-RKLQKLSLEGNPLVSPPMD 193 (281)
Q Consensus 161 ~n~-i~~~~-~~~~~l-~~L~~L~L~~n~l~~~~~~ 193 (281)
+|. ++.++ ..+..+ ++|+.|++++|.++.++..
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~ 223 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK 223 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccCChh
Confidence 995 99885 568888 9999999999999987654
No 34
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=4.8e-22 Score=163.58 Aligned_cols=180 Identities=29% Similarity=0.407 Sum_probs=158.0
Q ss_pred cc-CCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCc-chhhhcCccCceeeccCCcCcccChhHhhcCCCCcEE
Q 023495 9 RL-LNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESL-PKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTL 86 (281)
Q Consensus 9 ~~-~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 86 (281)
.| ...++++++++.++.+|..+. +.++.|++++|.++.+ +..+..+++|++|++++|.++.+++..+..+++|++|
T Consensus 11 ~C~~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 88 (251)
T 3m19_A 11 TCNEGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTL 88 (251)
T ss_dssp EEEGGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred EcCCCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEE
Confidence 44 467899999999999997765 6899999999999987 4578999999999999999999988877789999999
Q ss_pred EccCCcCcccCc-cccCCCCCcEEEccCCcCCCChhh-hhCCCCCCeeecccccccccCCCc-cccCCCcccEEEcCCCC
Q 023495 87 SINCNKIVILPQ-SLTHLTSLRVLDARLNCLKSLPED-LENLINLEVLNISQNFQYLETLPY-SIGLLMSLVELDVSYNK 163 (281)
Q Consensus 87 ~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~~~L~~L~l~~n~ 163 (281)
++++|.+..++. .+..+++|++|++++|.++.++.. +..+++|+.|++++| .+..++. .+..+++|+.|++++|.
T Consensus 89 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 89 GLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN--QLQSIPAGAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC--cCCccCHHHcCcCcCCCEEECCCCc
Confidence 999999997764 578999999999999999988765 788999999999999 4445554 68899999999999999
Q ss_pred CCCCC-hhhhcCCCCCEEEccCCCCCCCCH
Q 023495 164 ITTLP-DSIGCLRKLQKLSLEGNPLVSPPM 192 (281)
Q Consensus 164 i~~~~-~~~~~l~~L~~L~L~~n~l~~~~~ 192 (281)
++.++ ..+..+++|+.|++++|++.....
T Consensus 167 l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 196 (251)
T 3m19_A 167 LQSVPHGAFDRLGKLQTITLFGNQFDCSRC 196 (251)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSCCBCTTST
T ss_pred CCccCHHHHhCCCCCCEEEeeCCceeCCcc
Confidence 99876 478999999999999999987643
No 35
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=4.3e-23 Score=175.29 Aligned_cols=181 Identities=18% Similarity=0.188 Sum_probs=146.9
Q ss_pred ccCCCcEEEccCCCCC-ccchhc--cCCCCCcEEEccCCCCCCcchhhhcC-----ccCceeeccCCcCcccChhHhhcC
Q 023495 9 RLLNVVVLDVHSNQLK-CLPNSI--GCLSKLKVLDVSGNLLESLPKTIENC-----RSLEELNANFNKLRQLPDTIGFEL 80 (281)
Q Consensus 9 ~~~~L~~L~l~~~~l~-~l~~~~--~~l~~L~~L~L~~n~l~~l~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l 80 (281)
++++|++|++++|+++ .+|..+ ..+++|++|++++|.++.+|..+..+ ++|++|++++|.+..+++..+..+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 6899999999999998 467765 88999999999999999877777776 899999999999998886666689
Q ss_pred CCCcEEEccCCcCcc---cCccc--cCCCCCcEEEccCCcCCCChh---h-hhCCCCCCeeecccccccccCCC-ccccC
Q 023495 81 INLKTLSINCNKIVI---LPQSL--THLTSLRVLDARLNCLKSLPE---D-LENLINLEVLNISQNFQYLETLP-YSIGL 150 (281)
Q Consensus 81 ~~L~~L~l~~~~l~~---l~~~~--~~l~~L~~L~l~~n~l~~l~~---~-~~~l~~L~~L~l~~n~~~~~~~~-~~~~~ 150 (281)
++|++|++++|.+.. ++..+ ..+++|++|++++|.++.++. . +..+++|+.|++++| ...+..| ..+..
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAGAPSCDW 251 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCCCSCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC-cCCcccchhhhhh
Confidence 999999999998652 33333 788999999999999985542 2 467889999999999 3444343 34566
Q ss_pred CCcccEEEcCCCCCCCCChhhhcCCCCCEEEccCCCCCCCCH
Q 023495 151 LMSLVELDVSYNKITTLPDSIGCLRKLQKLSLEGNPLVSPPM 192 (281)
Q Consensus 151 ~~~L~~L~l~~n~i~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 192 (281)
+++|+.|++++|.++.+|..+. ++|+.|++++|++++.+.
T Consensus 252 l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~ 291 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS 291 (312)
T ss_dssp CTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC
T ss_pred cCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh
Confidence 7899999999999998887766 889999999999988753
No 36
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=4.6e-22 Score=165.47 Aligned_cols=181 Identities=35% Similarity=0.463 Sum_probs=159.2
Q ss_pred CCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcc-hhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEccC
Q 023495 12 NVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLP-KTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINC 90 (281)
Q Consensus 12 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 90 (281)
..+.+++++++++.+|..+. +++++|++++|.++.++ ..|..+++|++|++++|.++.++..++..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 57899999999999987664 68999999999999885 4788999999999999999999998877899999999999
Q ss_pred CcCcccCc-cccCCCCCcEEEccCCcCCCChh-hhhCCCCCCeeecccccccccCCCc-cccCCCcccEEEcCCCCCCCC
Q 023495 91 NKIVILPQ-SLTHLTSLRVLDARLNCLKSLPE-DLENLINLEVLNISQNFQYLETLPY-SIGLLMSLVELDVSYNKITTL 167 (281)
Q Consensus 91 ~~l~~l~~-~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~ 167 (281)
|.+..++. .+..+++|++|++++|.++.++. .+..+++|++|++++| .+..++. .+..+++|+.|++++|.++.+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN--ELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC--cCCccCHhHccCCcccceeEecCCcCcEe
Confidence 99997765 57889999999999999998765 4789999999999999 4445554 478999999999999999988
Q ss_pred Ch-hhhcCCCCCEEEccCCCCCCCCHHHHH
Q 023495 168 PD-SIGCLRKLQKLSLEGNPLVSPPMDVVE 196 (281)
Q Consensus 168 ~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~ 196 (281)
+. .+..+++|+.|++++|.++.++...+.
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 202 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFD 202 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhc
Confidence 64 588999999999999999988765543
No 37
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.88 E-value=2e-22 Score=185.83 Aligned_cols=184 Identities=23% Similarity=0.194 Sum_probs=101.1
Q ss_pred hccCCCcEEEccCCCCCcc---chhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccCh-hHhhcCCCC
Q 023495 8 ARLLNVVVLDVHSNQLKCL---PNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPD-TIGFELINL 83 (281)
Q Consensus 8 ~~~~~L~~L~l~~~~l~~l---~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L 83 (281)
..+++|++|++++|.++.+ +..+..+++|++|++++|.++.+|..+..+++|++|++++|.+..+++ ..+..+++|
T Consensus 347 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 426 (606)
T 3vq2_A 347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426 (606)
T ss_dssp CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC
T ss_pred ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccC
Confidence 3455666666666655543 445555566666666666555555555555566666666665554433 233355556
Q ss_pred cEEEccCCcCcc-cCccccCCCCCcEEEccCCcCCC--ChhhhhCCCCCCeeecccccccccCCCccccCCCcccEEEcC
Q 023495 84 KTLSINCNKIVI-LPQSLTHLTSLRVLDARLNCLKS--LPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVS 160 (281)
Q Consensus 84 ~~L~l~~~~l~~-l~~~~~~l~~L~~L~l~~n~l~~--l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~ 160 (281)
++|++++|.+.. .|..+..+++|++|++++|.++. +|..+..+++|+.|++++| ...+..|..+..+++|+.|+++
T Consensus 427 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls 505 (606)
T 3vq2_A 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMS 505 (606)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECC
T ss_pred CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccChhhhcccccCCEEECC
Confidence 666665555552 34445555556666666555553 3444555556666666555 3333344445555556666666
Q ss_pred CCCCCCC-ChhhhcCCCCCEEEccCCCCCCCCH
Q 023495 161 YNKITTL-PDSIGCLRKLQKLSLEGNPLVSPPM 192 (281)
Q Consensus 161 ~n~i~~~-~~~~~~l~~L~~L~L~~n~l~~~~~ 192 (281)
+|.++.+ |..+..+++|+.|++++|.++.++.
T Consensus 506 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~ 538 (606)
T 3vq2_A 506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG 538 (606)
T ss_dssp SSCCSCEEGGGTTTCTTCCEEECTTSCCCCEES
T ss_pred CCcCCCcCHHHccCCCcCCEEECCCCcCcccCH
Confidence 6655543 4555555556666666665555443
No 38
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=6.3e-23 Score=189.14 Aligned_cols=191 Identities=21% Similarity=0.239 Sum_probs=136.6
Q ss_pred hhHHhccCCCcEEEccCCCCCcc-chhccCCCCCcEEEccCCCCCCc-chhhhcCccCceeeccCCcCcccChhHhhcCC
Q 023495 4 ESLTARLLNVVVLDVHSNQLKCL-PNSIGCLSKLKVLDVSGNLLESL-PKTIENCRSLEELNANFNKLRQLPDTIGFELI 81 (281)
Q Consensus 4 ~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 81 (281)
...|.++++|++|++++|++..+ |..|+++++|++|++++|.++.+ |..+..+++|++|++++|.++.+++..+..++
T Consensus 50 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~ 129 (606)
T 3t6q_A 50 NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK 129 (606)
T ss_dssp TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCT
T ss_pred hhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCC
Confidence 33457788888888888887766 56678888888888888887765 56777788888888888888776554455778
Q ss_pred CCcEEEccCCcCcccC-ccccCCCCCcEEEccCCcCCCC-hhhhhCCCCCC--eeeccccccccc---------------
Q 023495 82 NLKTLSINCNKIVILP-QSLTHLTSLRVLDARLNCLKSL-PEDLENLINLE--VLNISQNFQYLE--------------- 142 (281)
Q Consensus 82 ~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~--~L~l~~n~~~~~--------------- 142 (281)
+|++|++++|.+..++ ..+..+++|++|++++|.++.+ +..++.+++|+ .|++++|. ..+
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~-l~~~~~~~~~~~~L~~L~ 208 (606)
T 3t6q_A 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND-IAGIEPGAFDSAVFQSLN 208 (606)
T ss_dssp TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCC-CCEECTTTTTTCEEEEEE
T ss_pred cccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCc-cCccChhHhhhccccccc
Confidence 8888888888877542 2334477888888888877755 44577777776 56666651 111
Q ss_pred ------------------------------------------------------------CCCccccCCCcccEEEcCCC
Q 023495 143 ------------------------------------------------------------TLPYSIGLLMSLVELDVSYN 162 (281)
Q Consensus 143 ------------------------------------------------------------~~~~~~~~~~~L~~L~l~~n 162 (281)
..+..+..+++|+.|++++|
T Consensus 209 l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 288 (606)
T 3t6q_A 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT 288 (606)
T ss_dssp CTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS
T ss_pred cCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCC
Confidence 11222566778888888888
Q ss_pred CCCCCChhhhcCCCCCEEEccCCCCCCCCHHHH
Q 023495 163 KITTLPDSIGCLRKLQKLSLEGNPLVSPPMDVV 195 (281)
Q Consensus 163 ~i~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 195 (281)
.++.+|..+..+++|+.|++++|.+...++..+
T Consensus 289 ~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~ 321 (606)
T 3t6q_A 289 HLSELPSGLVGLSTLKKLVLSANKFENLCQISA 321 (606)
T ss_dssp CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCG
T ss_pred ccCCCChhhcccccCCEEECccCCcCcCchhhh
Confidence 888888888888888888888888887655443
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=3.2e-22 Score=184.22 Aligned_cols=188 Identities=24% Similarity=0.263 Sum_probs=144.7
Q ss_pred ChhHHhccCCCcEEEccCCCCCccch-hccCCCCCcEEEccCCCCCCcchh-hhcCccCceeeccCCcCcccChhHhhcC
Q 023495 3 PESLTARLLNVVVLDVHSNQLKCLPN-SIGCLSKLKVLDVSGNLLESLPKT-IENCRSLEELNANFNKLRQLPDTIGFEL 80 (281)
Q Consensus 3 p~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l 80 (281)
|...|+++++|++|++++|.++.+++ .|+++++|++|++++|.++.+|.. |..+++|++|++++|.+..+++..+..+
T Consensus 91 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 170 (597)
T 3oja_B 91 DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 170 (597)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTC
T ss_pred ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcC
Confidence 34345777778888888777777643 467777778888877777777554 4677777777777777777666555567
Q ss_pred CCCcEEEccCCcCcccC------------------------------------------------------------ccc
Q 023495 81 INLKTLSINCNKIVILP------------------------------------------------------------QSL 100 (281)
Q Consensus 81 ~~L~~L~l~~~~l~~l~------------------------------------------------------------~~~ 100 (281)
++|++|++++|.+..++ ..+
T Consensus 171 ~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l 250 (597)
T 3oja_B 171 TSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWL 250 (597)
T ss_dssp TTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGG
T ss_pred CcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhh
Confidence 77777777766654221 225
Q ss_pred cCCCCCcEEEccCCcCCCC-hhhhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCCCCCChhhhcCCCCCE
Q 023495 101 THLTSLRVLDARLNCLKSL-PEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKITTLPDSIGCLRKLQK 179 (281)
Q Consensus 101 ~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~l~~L~~ 179 (281)
..+++|+.|++++|.++.+ |..++.+++|+.|++++| .+..+|..+..+++|+.|+|++|.++.+|..+..+++|+.
T Consensus 251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~ 328 (597)
T 3oja_B 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN--RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLEN 328 (597)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS--CCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSE
T ss_pred ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC--CCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCE
Confidence 6678899999999999855 667999999999999999 4555677777889999999999999999988999999999
Q ss_pred EEccCCCCCCCCH
Q 023495 180 LSLEGNPLVSPPM 192 (281)
Q Consensus 180 L~L~~n~l~~~~~ 192 (281)
|+|++|.+..++.
T Consensus 329 L~L~~N~l~~~~~ 341 (597)
T 3oja_B 329 LYLDHNSIVTLKL 341 (597)
T ss_dssp EECCSSCCCCCCC
T ss_pred EECCCCCCCCcCh
Confidence 9999999988763
No 40
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=3.1e-23 Score=184.72 Aligned_cols=88 Identities=20% Similarity=0.288 Sum_probs=40.0
Q ss_pred HhccCCCcEEEccCCCCCcc-chhccCCCCCcEEEccCCCCCCc-chh--hhcCccCceeeccCCcCcccCh-hHhhcCC
Q 023495 7 TARLLNVVVLDVHSNQLKCL-PNSIGCLSKLKVLDVSGNLLESL-PKT--IENCRSLEELNANFNKLRQLPD-TIGFELI 81 (281)
Q Consensus 7 ~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~L~~n~l~~l-~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~ 81 (281)
|.++++|++|++++|+++.+ |..|+++++|++|++++|.++.. +.. +..+++|++|++++|.+..+.+ ..+..++
T Consensus 75 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 154 (455)
T 3v47_A 75 FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR 154 (455)
T ss_dssp TTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT
T ss_pred ccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC
Confidence 34444455555555444433 33444445555555555444431 222 4444555555555555444422 2223455
Q ss_pred CCcEEEccCCcCc
Q 023495 82 NLKTLSINCNKIV 94 (281)
Q Consensus 82 ~L~~L~l~~~~l~ 94 (281)
+|++|++++|.+.
T Consensus 155 ~L~~L~L~~n~l~ 167 (455)
T 3v47_A 155 RFHVLDLTFNKVK 167 (455)
T ss_dssp TCCEEECTTCCBS
T ss_pred cccEEeCCCCccc
Confidence 5555555554443
No 41
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.88 E-value=6.9e-23 Score=176.89 Aligned_cols=188 Identities=27% Similarity=0.321 Sum_probs=127.6
Q ss_pred CChhHHhccCCCcEEEccCCCCCcc-chhccCCCCCcEEEccCCCCCCcchh-hhcCccCceeeccCCcCcccCh-hHhh
Q 023495 2 IPESLTARLLNVVVLDVHSNQLKCL-PNSIGCLSKLKVLDVSGNLLESLPKT-IENCRSLEELNANFNKLRQLPD-TIGF 78 (281)
Q Consensus 2 ip~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~~ 78 (281)
+|...+.++++|++|++++|+++.+ +..|.++++|++|++++|.++.++.. +..+++|++|++++|.++.++. ..+.
T Consensus 67 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 146 (353)
T 2z80_A 67 ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFS 146 (353)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCT
T ss_pred cCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhc
Confidence 3555568888888899888888877 45688888888888888888888654 7788888888888888888776 4444
Q ss_pred cCCCCcEEEccCC-cCccc-CccccCCCCCcEEEccCCcCCCC-hhhhhCCCCCCeeecccccccccCC-----------
Q 023495 79 ELINLKTLSINCN-KIVIL-PQSLTHLTSLRVLDARLNCLKSL-PEDLENLINLEVLNISQNFQYLETL----------- 144 (281)
Q Consensus 79 ~l~~L~~L~l~~~-~l~~l-~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~~~~~~~----------- 144 (281)
.+++|++|++++| .+..+ +..+..+++|++|++++|.++.+ |..+..+++|++|++++| ....+
T Consensus 147 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n--~l~~~~~~~~~~~~~L 224 (353)
T 2z80_A 147 HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK--QHILLLEIFVDVTSSV 224 (353)
T ss_dssp TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS--CSTTHHHHHHHHTTTE
T ss_pred cCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC--ccccchhhhhhhcccc
Confidence 7888888888877 35544 34566677777777777766643 444555555555555554 11222
Q ss_pred ---------------------------------------------CccccCCCcccEEEcCCCCCCCCChh-hhcCCCCC
Q 023495 145 ---------------------------------------------PYSIGLLMSLVELDVSYNKITTLPDS-IGCLRKLQ 178 (281)
Q Consensus 145 ---------------------------------------------~~~~~~~~~L~~L~l~~n~i~~~~~~-~~~l~~L~ 178 (281)
|..+..+++|+.|++++|.++.+|.. +..+++|+
T Consensus 225 ~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~ 304 (353)
T 2z80_A 225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQ 304 (353)
T ss_dssp EEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCC
Confidence 22344556666666666666666654 36666666
Q ss_pred EEEccCCCCCCCC
Q 023495 179 KLSLEGNPLVSPP 191 (281)
Q Consensus 179 ~L~L~~n~l~~~~ 191 (281)
.|++++|++....
T Consensus 305 ~L~L~~N~~~~~~ 317 (353)
T 2z80_A 305 KIWLHTNPWDCSC 317 (353)
T ss_dssp EEECCSSCBCCCH
T ss_pred EEEeeCCCccCcC
Confidence 6666666666543
No 42
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.88 E-value=5.4e-22 Score=166.86 Aligned_cols=176 Identities=25% Similarity=0.349 Sum_probs=156.6
Q ss_pred hccCCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEE
Q 023495 8 ARLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLS 87 (281)
Q Consensus 8 ~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 87 (281)
..+++|++|++++|.+..++. +..+++|++|++++|.++.++. +..+++|++|++++|.++.++. + ..+++|++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l-~~l~~L~~L~ 118 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-L-KDLKKLKSLS 118 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-G-TTCTTCCEEE
T ss_pred hhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-h-ccCCCCCEEE
Confidence 578899999999999998854 8889999999999999999876 8999999999999999998765 3 3899999999
Q ss_pred ccCCcCcccCccccCCCCCcEEEccCCcCCCChhhhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCCCCC
Q 023495 88 INCNKIVILPQSLTHLTSLRVLDARLNCLKSLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKITTL 167 (281)
Q Consensus 88 l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~ 167 (281)
+++|.+..+ ..+..+++|+.|++++|.++.+ ..+..+++|+.|++++| .+..++. +..+++|+.|++++|.++.+
T Consensus 119 L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N--~l~~~~~-l~~l~~L~~L~L~~N~i~~l 193 (291)
T 1h6t_A 119 LEHNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN--QISDIVP-LAGLTKLQNLYLSKNHISDL 193 (291)
T ss_dssp CTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSS--CCCCCGG-GTTCTTCCEEECCSSCCCBC
T ss_pred CCCCcCCCC-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCC--ccccchh-hcCCCccCEEECCCCcCCCC
Confidence 999999977 4678899999999999999988 57899999999999999 4455554 88999999999999999988
Q ss_pred ChhhhcCCCCCEEEccCCCCCCCCHH
Q 023495 168 PDSIGCLRKLQKLSLEGNPLVSPPMD 193 (281)
Q Consensus 168 ~~~~~~l~~L~~L~L~~n~l~~~~~~ 193 (281)
+. +..+++|+.|++++|++...+..
T Consensus 194 ~~-l~~l~~L~~L~l~~n~i~~~~~~ 218 (291)
T 1h6t_A 194 RA-LAGLKNLDVLELFSQECLNKPIN 218 (291)
T ss_dssp GG-GTTCTTCSEEEEEEEEEECCCEE
T ss_pred hh-hccCCCCCEEECcCCcccCCccc
Confidence 64 89999999999999999876543
No 43
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.88 E-value=1e-22 Score=175.81 Aligned_cols=188 Identities=22% Similarity=0.290 Sum_probs=162.5
Q ss_pred CChhHHhccCCCcEEEccCCCCCccch-hccCCCCCcEEEccCCCCCCc-chhhhcCccCceeeccCCcCcccChhHhhc
Q 023495 2 IPESLTARLLNVVVLDVHSNQLKCLPN-SIGCLSKLKVLDVSGNLLESL-PKTIENCRSLEELNANFNKLRQLPDTIGFE 79 (281)
Q Consensus 2 ip~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 79 (281)
||..++ ++|++|++++|+++.++. .+.++++|++|++++|.++.+ +..+..+++|++|++++|.++.++...+..
T Consensus 46 iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 122 (353)
T 2z80_A 46 IPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKP 122 (353)
T ss_dssp CCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTT
T ss_pred cccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCC
Confidence 666553 589999999999998865 789999999999999999987 567899999999999999999999987768
Q ss_pred CCCCcEEEccCCcCcccCc--cccCCCCCcEEEccCC-cCCCCh-hhhhCCCCCCeeecccccccccCCCccccCCCccc
Q 023495 80 LINLKTLSINCNKIVILPQ--SLTHLTSLRVLDARLN-CLKSLP-EDLENLINLEVLNISQNFQYLETLPYSIGLLMSLV 155 (281)
Q Consensus 80 l~~L~~L~l~~~~l~~l~~--~~~~l~~L~~L~l~~n-~l~~l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 155 (281)
+++|++|++++|.+..+|. .+..+++|++|++++| .++.++ ..+..+++|+.|++++| ...+..|..+..+++|+
T Consensus 123 l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~ 201 (353)
T 2z80_A 123 LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVS 201 (353)
T ss_dssp CTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEEE
T ss_pred CccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC-CcCccCHHHHhccccCC
Confidence 9999999999999998876 6889999999999998 467664 56899999999999999 45555678899999999
Q ss_pred EEEcCCCCCCCCChh-hhcCCCCCEEEccCCCCCCCCHH
Q 023495 156 ELDVSYNKITTLPDS-IGCLRKLQKLSLEGNPLVSPPMD 193 (281)
Q Consensus 156 ~L~l~~n~i~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~ 193 (281)
+|++++|.+..+|.. +..+++|+.|++++|.+++.+..
T Consensus 202 ~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 240 (353)
T 2z80_A 202 HLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS 240 (353)
T ss_dssp EEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC
T ss_pred eecCCCCccccchhhhhhhcccccEEECCCCcccccccc
Confidence 999999999888754 45689999999999999886543
No 44
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=1.2e-22 Score=187.17 Aligned_cols=187 Identities=26% Similarity=0.263 Sum_probs=132.6
Q ss_pred CChhHHhccCCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCc-chhhhcCccCceeeccCCcCc-ccChhHhhc
Q 023495 2 IPESLTARLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESL-PKTIENCRSLEELNANFNKLR-QLPDTIGFE 79 (281)
Q Consensus 2 ip~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~ 79 (281)
+|...|+++++|++|++++|+++.+|..+.++++|++|++++|.++.+ |..+..+++|++|++++|.+. .++...+..
T Consensus 269 ~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 348 (606)
T 3t6q_A 269 ISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348 (606)
T ss_dssp CCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTT
T ss_pred cCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhc
Confidence 455556778888888888888888887788888888888888888866 556777888888888888766 565554457
Q ss_pred CCCCcEEEccCCcCccc---CccccCCCCCcEEEccCCcCCCC-hhhhhCCCCCCeeecccccccccCCC-ccccCCCcc
Q 023495 80 LINLKTLSINCNKIVIL---PQSLTHLTSLRVLDARLNCLKSL-PEDLENLINLEVLNISQNFQYLETLP-YSIGLLMSL 154 (281)
Q Consensus 80 l~~L~~L~l~~~~l~~l---~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~L 154 (281)
+++|++|++++|.+..+ +..+..+++|++|++++|.+..+ +..+..+++|+.|++++| ...+..+ ..+..+++|
T Consensus 349 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L 427 (606)
T 3t6q_A 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT-RLKVKDAQSPFQNLHLL 427 (606)
T ss_dssp CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC-CEECCTTCCTTTTCTTC
T ss_pred cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC-cCCCcccchhhhCcccC
Confidence 77788888877777644 45567777777777777777643 445677777777777777 3333333 236667777
Q ss_pred cEEEcCCCCCCCC-ChhhhcCCCCCEEEccCCCCCC
Q 023495 155 VELDVSYNKITTL-PDSIGCLRKLQKLSLEGNPLVS 189 (281)
Q Consensus 155 ~~L~l~~n~i~~~-~~~~~~l~~L~~L~L~~n~l~~ 189 (281)
+.|++++|.+... |..+..+++|+.|++++|.+.+
T Consensus 428 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 463 (606)
T 3t6q_A 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK 463 (606)
T ss_dssp CEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGG
T ss_pred CEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCc
Confidence 7777777777643 4566677777777777776654
No 45
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.88 E-value=3.2e-22 Score=169.89 Aligned_cols=185 Identities=22% Similarity=0.184 Sum_probs=103.5
Q ss_pred CChhHHhccCCCcEEEccCCCCCc--cchhcc-------CCCCCcEEEccCCCCC-Ccchhh--hcCccCceeeccCCcC
Q 023495 2 IPESLTARLLNVVVLDVHSNQLKC--LPNSIG-------CLSKLKVLDVSGNLLE-SLPKTI--ENCRSLEELNANFNKL 69 (281)
Q Consensus 2 ip~~~~~~~~~L~~L~l~~~~l~~--l~~~~~-------~l~~L~~L~L~~n~l~-~l~~~~--~~l~~L~~L~L~~n~l 69 (281)
+|..+... |++|++++|+++. ++..+. ++++|++|++++|.++ .+|..+ ..+++|++|++++|.+
T Consensus 57 ~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 133 (312)
T 1wwl_A 57 DLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW 133 (312)
T ss_dssp CCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC
T ss_pred cHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC
Confidence 45554333 5566666666542 343333 5666666666666665 345544 5666666666666666
Q ss_pred cccChhHhhcC-----CCCcEEEccCCcCcccC-ccccCCCCCcEEEccCCcCCC---Chhhh--hCCCCCCeeeccccc
Q 023495 70 RQLPDTIGFEL-----INLKTLSINCNKIVILP-QSLTHLTSLRVLDARLNCLKS---LPEDL--ENLINLEVLNISQNF 138 (281)
Q Consensus 70 ~~~~~~~~~~l-----~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~l~~---l~~~~--~~l~~L~~L~l~~n~ 138 (281)
+.+|..+. .+ ++|++|++++|.+..++ ..+..+++|++|++++|.+.. ++..+ ..+++|++|++++|
T Consensus 134 ~~~~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N- 211 (312)
T 1wwl_A 134 ATRDAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA- 211 (312)
T ss_dssp SSSSSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-
T ss_pred cchhHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-
Confidence 65543332 33 66666666666666444 456666666666666666542 23333 56666666666666
Q ss_pred ccccCC---C-ccccCCCcccEEEcCCCCCCCCC--hhhhcCCCCCEEEccCCCCCCCCH
Q 023495 139 QYLETL---P-YSIGLLMSLVELDVSYNKITTLP--DSIGCLRKLQKLSLEGNPLVSPPM 192 (281)
Q Consensus 139 ~~~~~~---~-~~~~~~~~L~~L~l~~n~i~~~~--~~~~~l~~L~~L~L~~n~l~~~~~ 192 (281)
.+..+ + ..+..+++|+.|++++|.++..+ ..+..+++|+.|++++|.++.++.
T Consensus 212 -~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~ 270 (312)
T 1wwl_A 212 -GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK 270 (312)
T ss_dssp -CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCS
T ss_pred -cCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhh
Confidence 22211 1 12234566666666666666433 334455666666666666665544
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=3.9e-22 Score=170.55 Aligned_cols=179 Identities=24% Similarity=0.351 Sum_probs=149.8
Q ss_pred CCCcEEEccCCCCCccch-hccCCCCCcEEEccCCCCCCc-chhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEc
Q 023495 11 LNVVVLDVHSNQLKCLPN-SIGCLSKLKVLDVSGNLLESL-PKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSI 88 (281)
Q Consensus 11 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 88 (281)
+.+++|++++|+++.++. .|.++++|++|++++|.++.+ |..+..+++|++|++++|.++.+|..++ ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~---~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP---KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC---TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc---ccccEEEC
Confidence 578899999999988865 688899999999999999877 7788889999999999999988887653 78999999
Q ss_pred cCCcCcccCc-cccCCCCCcEEEccCCcCC---CChhhhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCC
Q 023495 89 NCNKIVILPQ-SLTHLTSLRVLDARLNCLK---SLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKI 164 (281)
Q Consensus 89 ~~~~l~~l~~-~~~~l~~L~~L~l~~n~l~---~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i 164 (281)
++|.+..++. .+..+++|+.|++++|.++ ..+..+..+++|+.|++++| ....+|..+. ++|+.|++++|.+
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n--~l~~l~~~~~--~~L~~L~l~~n~l 204 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT--NITTIPQGLP--PSLTELHLDGNKI 204 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS--CCCSCCSSCC--TTCSEEECTTSCC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC--ccccCCcccc--ccCCEEECCCCcC
Confidence 9998886654 5788999999999999887 34556888999999999998 4556665544 7899999999999
Q ss_pred CCC-ChhhhcCCCCCEEEccCCCCCCCCHHHHH
Q 023495 165 TTL-PDSIGCLRKLQKLSLEGNPLVSPPMDVVE 196 (281)
Q Consensus 165 ~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 196 (281)
+.+ +..+..+++|+.|++++|.+++.++..+.
T Consensus 205 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 237 (330)
T 1xku_A 205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237 (330)
T ss_dssp CEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred CccCHHHhcCCCCCCEEECCCCcCceeChhhcc
Confidence 966 67889999999999999999887765443
No 47
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.87 E-value=2.9e-22 Score=170.49 Aligned_cols=180 Identities=22% Similarity=0.271 Sum_probs=102.7
Q ss_pred hHHhccCCCcEEEccCCCCCccc-hhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCc-------------
Q 023495 5 SLTARLLNVVVLDVHSNQLKCLP-NSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLR------------- 70 (281)
Q Consensus 5 ~~~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~------------- 70 (281)
.++..+++|++|++++|+++.++ ..+.++++|++|++++|.++.+++ +..+++|++|++++|.++
T Consensus 28 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l 106 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHA 106 (317)
T ss_dssp HHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEECTTCCEEEC
T ss_pred HHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccCCCCcCEEEC
Confidence 34444555666666666665553 345556666666666665554432 444555555555554433
Q ss_pred ---------------------------ccChhHhhcCCCCcEEEccCCcCccc-Cccc-cCCCCCcEEEccCCcCCCChh
Q 023495 71 ---------------------------QLPDTIGFELINLKTLSINCNKIVIL-PQSL-THLTSLRVLDARLNCLKSLPE 121 (281)
Q Consensus 71 ---------------------------~~~~~~~~~l~~L~~L~l~~~~l~~l-~~~~-~~l~~L~~L~l~~n~l~~l~~ 121 (281)
.+++..+..+++|++|++++|.+..+ +..+ ..+++|++|++++|.++.++.
T Consensus 107 ~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 186 (317)
T 3o53_A 107 ANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186 (317)
T ss_dssp CSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC
T ss_pred CCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc
Confidence 33332233455555555555555533 2222 245556666666665554432
Q ss_pred hhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCCCCCChhhhcCCCCCEEEccCCCCC
Q 023495 122 DLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKITTLPDSIGCLRKLQKLSLEGNPLV 188 (281)
Q Consensus 122 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~l~~L~~L~L~~n~l~ 188 (281)
. ..+++|+.|++++| .+..+|..+..+++|+.|++++|.++.+|..+..+++|+.|++++|++.
T Consensus 187 ~-~~l~~L~~L~Ls~N--~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 187 Q-VVFAKLKTLDLSSN--KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp C-CCCTTCCEEECCSS--CCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred c-cccccCCEEECCCC--cCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence 2 23566666666666 3445555566777777777777777777777777777777777777776
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=3.2e-22 Score=171.24 Aligned_cols=177 Identities=24% Similarity=0.347 Sum_probs=113.5
Q ss_pred CCCcEEEccCCCCCccc-hhccCCCCCcEEEccCCCCCCc-chhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEc
Q 023495 11 LNVVVLDVHSNQLKCLP-NSIGCLSKLKVLDVSGNLLESL-PKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSI 88 (281)
Q Consensus 11 ~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 88 (281)
+++++|++++|+++.++ ..|.++++|++|++++|.++.+ |..+..+++|++|++++|.++.+|..++ ++|++|++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l 130 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRI 130 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC---TTCCEEEC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc---ccCCEEEC
Confidence 46677777777777663 3567777777777777777765 5666777777777777777776666543 56777777
Q ss_pred cCCcCcccCc-cccCCCCCcEEEccCCcCC---CChhhhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCC
Q 023495 89 NCNKIVILPQ-SLTHLTSLRVLDARLNCLK---SLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKI 164 (281)
Q Consensus 89 ~~~~l~~l~~-~~~~l~~L~~L~l~~n~l~---~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i 164 (281)
++|.+..++. .+..+++|+.|++++|.++ ..+..+..+ +|+.|++++| ....+|..+. ++|+.|++++|.+
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n--~l~~l~~~~~--~~L~~L~l~~n~i 205 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA--KLTGIPKDLP--ETLNELHLDHNKI 205 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS--BCSSCCSSSC--SSCSCCBCCSSCC
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC--CCCccCcccc--CCCCEEECCCCcC
Confidence 7777776554 3667777777777777765 223344444 5666666665 3333443332 4666677777766
Q ss_pred CCCC-hhhhcCCCCCEEEccCCCCCCCCHHHH
Q 023495 165 TTLP-DSIGCLRKLQKLSLEGNPLVSPPMDVV 195 (281)
Q Consensus 165 ~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~ 195 (281)
+.++ ..+..+++|+.|++++|.+++.++..+
T Consensus 206 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~ 237 (332)
T 2ft3_A 206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSL 237 (332)
T ss_dssp CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCcCChhHh
Confidence 6554 556677777777777777776655443
No 49
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=3.8e-22 Score=177.70 Aligned_cols=111 Identities=24% Similarity=0.279 Sum_probs=61.1
Q ss_pred HhccCCCcEEEccCCCCC-cc-chhccCCCCCcEEEccCCCCCCc-chhhhcCccCceeeccCCcCccc-C-hhHhhcCC
Q 023495 7 TARLLNVVVLDVHSNQLK-CL-PNSIGCLSKLKVLDVSGNLLESL-PKTIENCRSLEELNANFNKLRQL-P-DTIGFELI 81 (281)
Q Consensus 7 ~~~~~~L~~L~l~~~~l~-~l-~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~~~l~ 81 (281)
++++++|++|++++|.+. .+ +..|.++++|++|++++|.++.+ |..+..+++|++|++++|.++.. + ...+..++
T Consensus 50 ~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 129 (455)
T 3v47_A 50 FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLT 129 (455)
T ss_dssp TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCT
T ss_pred hccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcc
Confidence 355566666666666554 33 33455566666666666665544 45555566666666666655531 1 11133556
Q ss_pred CCcEEEccCCcCccc-Ccc-ccCCCCCcEEEccCCcCC
Q 023495 82 NLKTLSINCNKIVIL-PQS-LTHLTSLRVLDARLNCLK 117 (281)
Q Consensus 82 ~L~~L~l~~~~l~~l-~~~-~~~l~~L~~L~l~~n~l~ 117 (281)
+|++|++++|.+..+ |.. +..+++|++|++++|.++
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred cCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 666666666666543 333 556666666666666555
No 50
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=5.1e-22 Score=162.20 Aligned_cols=179 Identities=23% Similarity=0.271 Sum_probs=154.6
Q ss_pred CChhHHhccCCCcEEEccCCC-CCccch-hccCCCCCcEEEccC-CCCCCcc-hhhhcCccCceeeccCCcCcccChhHh
Q 023495 2 IPESLTARLLNVVVLDVHSNQ-LKCLPN-SIGCLSKLKVLDVSG-NLLESLP-KTIENCRSLEELNANFNKLRQLPDTIG 77 (281)
Q Consensus 2 ip~~~~~~~~~L~~L~l~~~~-l~~l~~-~~~~l~~L~~L~L~~-n~l~~l~-~~~~~l~~L~~L~L~~n~l~~~~~~~~ 77 (281)
+|...|.++++|++|++++|+ ++.++. .|.++++|++|++++ |.++.++ ..|..+++|++|++++|.++.+|. +
T Consensus 46 i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~--~ 123 (239)
T 2xwt_C 46 IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD--L 123 (239)
T ss_dssp ECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC--C
T ss_pred ECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc--c
Confidence 566667899999999999997 998865 789999999999998 9999885 568899999999999999999887 3
Q ss_pred hcCCCCc---EEEccCC-cCcccCc-cccCCCCCc-EEEccCCcCCCChhhhhCCCCCCeeecccccccccCC-CccccC
Q 023495 78 FELINLK---TLSINCN-KIVILPQ-SLTHLTSLR-VLDARLNCLKSLPEDLENLINLEVLNISQNFQYLETL-PYSIGL 150 (281)
Q Consensus 78 ~~l~~L~---~L~l~~~-~l~~l~~-~~~~l~~L~-~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~ 150 (281)
..+++|+ +|++++| .+..++. .+..+++|+ .|++++|.++.+|......++|+.|++++| .....+ +..+..
T Consensus 124 ~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n-~~l~~i~~~~~~~ 202 (239)
T 2xwt_C 124 TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKN-KYLTVIDKDAFGG 202 (239)
T ss_dssp TTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTC-TTCCEECTTTTTT
T ss_pred ccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCC-CCcccCCHHHhhc
Confidence 4788888 9999999 8988765 488999999 999999999988876555589999999999 324444 456888
Q ss_pred C-CcccEEEcCCCCCCCCChhhhcCCCCCEEEccCC
Q 023495 151 L-MSLVELDVSYNKITTLPDSIGCLRKLQKLSLEGN 185 (281)
Q Consensus 151 ~-~~L~~L~l~~n~i~~~~~~~~~l~~L~~L~L~~n 185 (281)
+ ++|+.|++++|.++.+|.. .+++|+.|+++++
T Consensus 203 l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 203 VYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred cccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 8 9999999999999999865 7889999999876
No 51
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=3.8e-20 Score=159.16 Aligned_cols=175 Identities=19% Similarity=0.281 Sum_probs=132.5
Q ss_pred HhccCCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEE
Q 023495 7 TARLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTL 86 (281)
Q Consensus 7 ~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 86 (281)
+.++++|++|++++|.++.++ .+..+++|++|++++|.++.++. +..+++|++|++++|......+.+. .+++|++|
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~-~l~~L~~L 160 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLS-NMTGLNYL 160 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGT-TCTTCCEE
T ss_pred hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccchh-hCCCCcEE
Confidence 578899999999999988875 58889999999999999888865 7788889999998885443333443 78888888
Q ss_pred EccCCcCcccCccccCCCCCcEEEccCCcCCCChhhhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCCCC
Q 023495 87 SINCNKIVILPQSLTHLTSLRVLDARLNCLKSLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKITT 166 (281)
Q Consensus 87 ~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 166 (281)
++++|.+..++. +..+++|+.|++++|.+..++. +..+++|+.+++++| .....+. +..+++|+.|++++|.++.
T Consensus 161 ~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n--~l~~~~~-~~~~~~L~~L~l~~n~l~~ 235 (347)
T 4fmz_A 161 TVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVN--QITDITP-VANMTRLNSLKIGNNKITD 235 (347)
T ss_dssp ECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSS--CCCCCGG-GGGCTTCCEEECCSSCCCC
T ss_pred EecCCCcCCchh-hccCCCCCEEEccCCccccccc-ccCCCccceeecccC--CCCCCch-hhcCCcCCEEEccCCccCC
Confidence 888888776654 6777888888888888877765 677777777777777 3333332 6667777777777777776
Q ss_pred CChhhhcCCCCCEEEccCCCCCCC
Q 023495 167 LPDSIGCLRKLQKLSLEGNPLVSP 190 (281)
Q Consensus 167 ~~~~~~~l~~L~~L~L~~n~l~~~ 190 (281)
++. +..+++|+.|++++|.++.+
T Consensus 236 ~~~-~~~l~~L~~L~l~~n~l~~~ 258 (347)
T 4fmz_A 236 LSP-LANLSQLTWLEIGTNQISDI 258 (347)
T ss_dssp CGG-GTTCTTCCEEECCSSCCCCC
T ss_pred Ccc-hhcCCCCCEEECCCCccCCC
Confidence 655 67777777777777777765
No 52
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=2.4e-20 Score=160.34 Aligned_cols=177 Identities=21% Similarity=0.309 Sum_probs=124.9
Q ss_pred HhccCCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEE
Q 023495 7 TARLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTL 86 (281)
Q Consensus 7 ~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 86 (281)
+..+++|++|++++|+++.++. +..+++|++|++++|.++.++ .+..+++|++|++++|.+..++. ...+++|++|
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L 137 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP--LANLTKMYSL 137 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEE
T ss_pred hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh--hccCCceeEE
Confidence 3566777777777777776655 667777777777777776664 46677777777777777776655 2367777777
Q ss_pred EccCCcCcccCccccCCCCCcEEEccCCcCCCChhhhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCCCC
Q 023495 87 SINCNKIVILPQSLTHLTSLRVLDARLNCLKSLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKITT 166 (281)
Q Consensus 87 ~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 166 (281)
++++|........+..+++|++|++++|.+..++. +..+++|+.|++++| ....++. +..+++|+.|++++|.+..
T Consensus 138 ~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n--~l~~~~~-~~~l~~L~~L~l~~n~l~~ 213 (347)
T 4fmz_A 138 NLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYN--QIEDISP-LASLTSLHYFTAYVNQITD 213 (347)
T ss_dssp ECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTS--CCCCCGG-GGGCTTCCEEECCSSCCCC
T ss_pred ECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCC--ccccccc-ccCCCccceeecccCCCCC
Confidence 77777544333446777777777777777776654 677778888888877 3444443 6777788888888888776
Q ss_pred CChhhhcCCCCCEEEccCCCCCCCCH
Q 023495 167 LPDSIGCLRKLQKLSLEGNPLVSPPM 192 (281)
Q Consensus 167 ~~~~~~~l~~L~~L~L~~n~l~~~~~ 192 (281)
++. +..+++|+.|++++|.++..+.
T Consensus 214 ~~~-~~~~~~L~~L~l~~n~l~~~~~ 238 (347)
T 4fmz_A 214 ITP-VANMTRLNSLKIGNNKITDLSP 238 (347)
T ss_dssp CGG-GGGCTTCCEEECCSSCCCCCGG
T ss_pred Cch-hhcCCcCCEEEccCCccCCCcc
Confidence 654 7788888999999988888765
No 53
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.86 E-value=5.8e-22 Score=182.68 Aligned_cols=183 Identities=21% Similarity=0.195 Sum_probs=93.8
Q ss_pred ccCCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCc---chhhhcCccCceeeccCCcCcccChhHhhcCCCCcE
Q 023495 9 RLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESL---PKTIENCRSLEELNANFNKLRQLPDTIGFELINLKT 85 (281)
Q Consensus 9 ~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 85 (281)
.+++|++|++++|..... ..+..+++|++|++++|.++.+ +..+..+++|++|++++|.+..++..+. .+++|+.
T Consensus 326 ~l~~L~~L~l~~n~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~l~~L~~ 403 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSIS-FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFM-GLEELQH 403 (606)
T ss_dssp CCSSCCEEEEESCSSCEE-CCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCT-TCTTCCE
T ss_pred CCCccceeeccCCcCccc-hhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhcc-CCCCCCe
Confidence 455555555555532211 1344555555555555555433 4455555555555555555555553332 4555555
Q ss_pred EEccCCcCcccC--ccccCCCCCcEEEccCCcCC-CChhhhhCCCCCCeeeccccccccc-CCCccccCCCcccEEEcCC
Q 023495 86 LSINCNKIVILP--QSLTHLTSLRVLDARLNCLK-SLPEDLENLINLEVLNISQNFQYLE-TLPYSIGLLMSLVELDVSY 161 (281)
Q Consensus 86 L~l~~~~l~~l~--~~~~~l~~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~~L~~L~l~~ 161 (281)
|++++|.+...+ ..+..+++|++|++++|.+. ..|..+..+++|++|++++| ...+ ..|..+..+++|+.|++++
T Consensus 404 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~ 482 (606)
T 3vq2_A 404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSK 482 (606)
T ss_dssp EECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTT
T ss_pred eECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCC
Confidence 555555555332 24455555555555555555 23444555555555555555 2222 2444555555555555555
Q ss_pred CCCCCC-ChhhhcCCCCCEEEccCCCCCCCCHHH
Q 023495 162 NKITTL-PDSIGCLRKLQKLSLEGNPLVSPPMDV 194 (281)
Q Consensus 162 n~i~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~ 194 (281)
|.++.+ |..+..+++|+.|++++|.+++.++..
T Consensus 483 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 516 (606)
T 3vq2_A 483 CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSH 516 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGG
T ss_pred CcCCccChhhhcccccCCEEECCCCcCCCcCHHH
Confidence 555533 344555555555555555555554433
No 54
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.86 E-value=6.3e-21 Score=181.09 Aligned_cols=182 Identities=19% Similarity=0.295 Sum_probs=112.0
Q ss_pred hccCCCcEEEccCCCCCccchhccCCCC-CcEEEccCCCCCCcchhhh-------------------------------c
Q 023495 8 ARLLNVVVLDVHSNQLKCLPNSIGCLSK-LKVLDVSGNLLESLPKTIE-------------------------------N 55 (281)
Q Consensus 8 ~~~~~L~~L~l~~~~l~~l~~~~~~l~~-L~~L~L~~n~l~~l~~~~~-------------------------------~ 55 (281)
+++++|++|++++|+++.+|..+..+++ |+.|++++|.++.+|..+. .
T Consensus 592 ~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~ 671 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671 (876)
T ss_dssp CTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCC
T ss_pred cCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhcccc
Confidence 4455555555555555544444444444 5555555554444443322 2
Q ss_pred CccCceeeccCCcCcccChhHhhcCCCCcEEEccCCcCcccCccccC--------CCCCcEEEccCCcCCCChhhhh--C
Q 023495 56 CRSLEELNANFNKLRQLPDTIGFELINLKTLSINCNKIVILPQSLTH--------LTSLRVLDARLNCLKSLPEDLE--N 125 (281)
Q Consensus 56 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~--------l~~L~~L~l~~n~l~~l~~~~~--~ 125 (281)
+++|++|++++|.+..+|..++..+++|+.|++++|.+..+|..+.. +++|+.|++++|.++.+|..+. .
T Consensus 672 ~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~ 751 (876)
T 4ecn_A 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATT 751 (876)
T ss_dssp CCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTT
T ss_pred CCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhcc
Confidence 23566666666666666666665677777777777777766654322 2267777777777777776665 7
Q ss_pred CCCCCeeecccccccccCCCccccCCCcccEEEcCC------CCCC-CCChhhhcCCCCCEEEccCCCCCCCC
Q 023495 126 LINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSY------NKIT-TLPDSIGCLRKLQKLSLEGNPLVSPP 191 (281)
Q Consensus 126 l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~------n~i~-~~~~~~~~l~~L~~L~L~~n~l~~~~ 191 (281)
+++|+.|++++| .+..+|..+..+++|+.|+|++ |.+. .+|..+..+++|+.|+|++|.+..+|
T Consensus 752 l~~L~~L~Ls~N--~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip 822 (876)
T 4ecn_A 752 LPYLSNMDVSYN--CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVD 822 (876)
T ss_dssp CTTCCEEECCSS--CCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCC
T ss_pred CCCcCEEEeCCC--CCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccC
Confidence 777777777777 3334666677777777777765 4444 56667777777777777777775554
No 55
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.86 E-value=1.4e-21 Score=182.51 Aligned_cols=186 Identities=26% Similarity=0.302 Sum_probs=108.4
Q ss_pred hccCCCcEEEccCCCCC-ccc-hhccCCCCCcEEEccCCCCCCc-chhhhcCccCceeeccCCcCc---ccChhHhhcCC
Q 023495 8 ARLLNVVVLDVHSNQLK-CLP-NSIGCLSKLKVLDVSGNLLESL-PKTIENCRSLEELNANFNKLR---QLPDTIGFELI 81 (281)
Q Consensus 8 ~~~~~L~~L~l~~~~l~-~l~-~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~ 81 (281)
..+++|++|++++|.+. .++ ..+.++++|++|++++|.+..+ +..+..+++|++|++++|.+. .+|..+ ..++
T Consensus 402 ~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~-~~l~ 480 (680)
T 1ziw_A 402 SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF-QPLR 480 (680)
T ss_dssp TTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT-TTCT
T ss_pred hCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccc-ccCC
Confidence 34444444444444443 122 2344444444444444444433 233444444555555444443 222222 2566
Q ss_pred CCcEEEccCCcCcccCc-cccCCCCCcEEEccCCcCCCChh---------hhhCCCCCCeeecccccccccCCCc-cccC
Q 023495 82 NLKTLSINCNKIVILPQ-SLTHLTSLRVLDARLNCLKSLPE---------DLENLINLEVLNISQNFQYLETLPY-SIGL 150 (281)
Q Consensus 82 ~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~l~~l~~---------~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~ 150 (281)
+|+.|++++|.+..++. .+..+++|+.|++++|.++.++. .+.++++|+.|++++| .+..+|. .|..
T Consensus 481 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N--~l~~i~~~~~~~ 558 (680)
T 1ziw_A 481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN--GFDEIPVEVFKD 558 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS--CCCCCCTTTTTT
T ss_pred CCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC--CCCCCCHHHccc
Confidence 66777776666665543 36666777777777776664321 2566677777777777 3345554 4677
Q ss_pred CCcccEEEcCCCCCCCCCh-hhhcCCCCCEEEccCCCCCCCCHHHHH
Q 023495 151 LMSLVELDVSYNKITTLPD-SIGCLRKLQKLSLEGNPLVSPPMDVVE 196 (281)
Q Consensus 151 ~~~L~~L~l~~n~i~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~ 196 (281)
+++|+.|++++|+++.+|. .+..+++|+.|++++|.++++++..+.
T Consensus 559 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 605 (680)
T 1ziw_A 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG 605 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHH
T ss_pred ccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhc
Confidence 7888888888888887764 457788888888888888888776654
No 56
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=1.9e-21 Score=161.93 Aligned_cols=175 Identities=31% Similarity=0.334 Sum_probs=149.0
Q ss_pred HhccCCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcch-hhhcCccCceeeccCCcCcccChhHhhcCCCCcE
Q 023495 7 TARLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPK-TIENCRSLEELNANFNKLRQLPDTIGFELINLKT 85 (281)
Q Consensus 7 ~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 85 (281)
+..+++|++|++++|.++.++ .+..+++|++|++++|.++.++. .+..+++|++|++++|.++.+++..+..+++|++
T Consensus 59 l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 137 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCE
Confidence 478999999999999999874 68899999999999999998854 5789999999999999999999887768999999
Q ss_pred EEccCCcCcccCcc-ccCCCCCcEEEccCCcCCCChhh-hhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCC
Q 023495 86 LSINCNKIVILPQS-LTHLTSLRVLDARLNCLKSLPED-LENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNK 163 (281)
Q Consensus 86 L~l~~~~l~~l~~~-~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~ 163 (281)
|++++|.+..++.. +..+++|+.|++++|.++.++.. +..+++|+.|++++| ...+..+..+..+++|+.|++++|.
T Consensus 138 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCCC
Confidence 99999999977654 68999999999999999987664 789999999999999 4455555568899999999999997
Q ss_pred CCCCChhhhcCCCCCEEEccCCCCCC
Q 023495 164 ITTLPDSIGCLRKLQKLSLEGNPLVS 189 (281)
Q Consensus 164 i~~~~~~~~~l~~L~~L~L~~n~l~~ 189 (281)
+. +.+++|+.++++.|.+.+
T Consensus 217 ~~------~~~~~l~~l~~~~n~~~g 236 (272)
T 3rfs_A 217 WD------CTCPGIRYLSEWINKHSG 236 (272)
T ss_dssp BC------CCTTTTHHHHHHHHHTGG
T ss_pred cc------ccCcHHHHHHHHHHhCCC
Confidence 65 335566666666665543
No 57
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=2.3e-21 Score=175.57 Aligned_cols=42 Identities=29% Similarity=0.364 Sum_probs=31.9
Q ss_pred cCCCcccEEEcCCCCCCC-CChhhhcCCCCCEEEccCCCCCCC
Q 023495 149 GLLMSLVELDVSYNKITT-LPDSIGCLRKLQKLSLEGNPLVSP 190 (281)
Q Consensus 149 ~~~~~L~~L~l~~n~i~~-~~~~~~~l~~L~~L~L~~n~l~~~ 190 (281)
..+++|+.|++++|.++. +|..+..+++|+.|++++|.++++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 363 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL 363 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBH
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcc
Confidence 456777888888888774 577777888888888888888764
No 58
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=1.3e-21 Score=175.81 Aligned_cols=173 Identities=21% Similarity=0.260 Sum_probs=91.3
Q ss_pred CCcEEEccCCCCCcc-chhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCc--------------------
Q 023495 12 NVVVLDVHSNQLKCL-PNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLR-------------------- 70 (281)
Q Consensus 12 ~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~-------------------- 70 (281)
+|++|++++|.++.+ |..|+.+++|++|+|++|.++..++ +..+++|++|++++|.++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~ 113 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISR 113 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCC
Confidence 555666666555554 2345555555555555555554322 444445544444444333
Q ss_pred --------------------ccChhHhhcCCCCcEEEccCCcCcc-cCcccc-CCCCCcEEEccCCcCCCChhhhhCCCC
Q 023495 71 --------------------QLPDTIGFELINLKTLSINCNKIVI-LPQSLT-HLTSLRVLDARLNCLKSLPEDLENLIN 128 (281)
Q Consensus 71 --------------------~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~-~l~~L~~L~l~~n~l~~l~~~~~~l~~ 128 (281)
.+++..+..+++|++|++++|.+.. .|..+. .+++|+.|++++|.++.++. ...+++
T Consensus 114 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~ 192 (487)
T 3oja_A 114 VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAK 192 (487)
T ss_dssp EEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTT
T ss_pred CCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-cccCCC
Confidence 2222222234444455554444442 222332 34455555555555544422 223555
Q ss_pred CCeeecccccccccCCCccccCCCcccEEEcCCCCCCCCChhhhcCCCCCEEEccCCCCC
Q 023495 129 LEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKITTLPDSIGCLRKLQKLSLEGNPLV 188 (281)
Q Consensus 129 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~l~~L~~L~L~~n~l~ 188 (281)
|+.|++++| .+..+|..+..+++|+.|++++|.++.+|..+..+++|+.|++++|++.
T Consensus 193 L~~L~Ls~N--~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 193 LKTLDLSSN--KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCEEECCSS--CCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred CCEEECCCC--CCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 666666665 3334455566666677777777777666666666677777777777665
No 59
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=1.9e-21 Score=177.22 Aligned_cols=186 Identities=20% Similarity=0.228 Sum_probs=159.9
Q ss_pred CCChhHHhccCCCcEEEccCCCCCcc-chhccCCCCCcEEEccCCCCCCc-chhhhcCccCceeeccCCcCcccChhHhh
Q 023495 1 MIPESLTARLLNVVVLDVHSNQLKCL-PNSIGCLSKLKVLDVSGNLLESL-PKTIENCRSLEELNANFNKLRQLPDTIGF 78 (281)
Q Consensus 1 ~ip~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 78 (281)
+||..++ ++|++|++++|+++.+ +..|.++++|++|++++|.++.+ |..|..+++|++|++++|.++.+++..+.
T Consensus 19 ~ip~~~~---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 95 (549)
T 2z81_A 19 SIPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG 95 (549)
T ss_dssp SCCSCCC---TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHT
T ss_pred cccccCC---CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhc
Confidence 3676653 6899999999999987 56799999999999999999977 46789999999999999999999988666
Q ss_pred cCCCCcEEEccCCcCcc--cCccccCCCCCcEEEccCCc-CCCCh-hhhhCCCCCCeeecccccccccCCCccccCCCcc
Q 023495 79 ELINLKTLSINCNKIVI--LPQSLTHLTSLRVLDARLNC-LKSLP-EDLENLINLEVLNISQNFQYLETLPYSIGLLMSL 154 (281)
Q Consensus 79 ~l~~L~~L~l~~~~l~~--l~~~~~~l~~L~~L~l~~n~-l~~l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L 154 (281)
.+++|++|++++|.+.. .|..+..+++|++|++++|. ++.++ ..+.++++|+.|++++| ...+..|..+..+++|
T Consensus 96 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L 174 (549)
T 2z81_A 96 PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL-SLRNYQSQSLKSIRDI 174 (549)
T ss_dssp TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEE
T ss_pred cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC-cccccChhhhhccccC
Confidence 99999999999999984 46678999999999999998 56676 46899999999999999 5566678888889999
Q ss_pred cEEEcCCCCCCCCChhh-hcCCCCCEEEccCCCCCCC
Q 023495 155 VELDVSYNKITTLPDSI-GCLRKLQKLSLEGNPLVSP 190 (281)
Q Consensus 155 ~~L~l~~n~i~~~~~~~-~~l~~L~~L~L~~n~l~~~ 190 (281)
+.|++++|.+..+|..+ ..+++|+.|++++|.+++.
T Consensus 175 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 175 HHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp EEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred ceEecccCcccccchhhHhhcccccEEEccCCccccc
Confidence 99999999888777654 5688999999999988774
No 60
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=1.2e-20 Score=155.31 Aligned_cols=162 Identities=27% Similarity=0.345 Sum_probs=141.3
Q ss_pred CChhHHhccCCCcEEEccCCCCCccc-hhccCCCCCcEEEccCCCCCCc-chhhhcCccCceeeccCCcCcccChhHhhc
Q 023495 2 IPESLTARLLNVVVLDVHSNQLKCLP-NSIGCLSKLKVLDVSGNLLESL-PKTIENCRSLEELNANFNKLRQLPDTIGFE 79 (281)
Q Consensus 2 ip~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 79 (281)
+|..+ .+.+++|++++|+++.++ ..|.++++|++|++++|.++.+ +..+..+++|++|++++|.++.+++..+..
T Consensus 29 ~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 105 (251)
T 3m19_A 29 VPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDH 105 (251)
T ss_dssp CCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred cCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcc
Confidence 56554 258999999999999885 4689999999999999999987 456889999999999999999999888778
Q ss_pred CCCCcEEEccCCcCcccCcc-ccCCCCCcEEEccCCcCCCChh-hhhCCCCCCeeecccccccccCCCccccCCCcccEE
Q 023495 80 LINLKTLSINCNKIVILPQS-LTHLTSLRVLDARLNCLKSLPE-DLENLINLEVLNISQNFQYLETLPYSIGLLMSLVEL 157 (281)
Q Consensus 80 l~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 157 (281)
+++|++|++++|.+..++.. +..+++|++|++++|.++.++. .+..+++|+.|++++| ...+..+..+..+++|+.|
T Consensus 106 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 184 (251)
T 3m19_A 106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTI 184 (251)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEE
Confidence 99999999999999987664 6889999999999999998877 5899999999999999 4444444578899999999
Q ss_pred EcCCCCCCCC
Q 023495 158 DVSYNKITTL 167 (281)
Q Consensus 158 ~l~~n~i~~~ 167 (281)
++++|.+...
T Consensus 185 ~l~~N~~~c~ 194 (251)
T 3m19_A 185 TLFGNQFDCS 194 (251)
T ss_dssp ECCSCCBCTT
T ss_pred EeeCCceeCC
Confidence 9999998743
No 61
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=8.5e-21 Score=172.71 Aligned_cols=165 Identities=35% Similarity=0.494 Sum_probs=119.6
Q ss_pred CCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEccC
Q 023495 11 LNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINC 90 (281)
Q Consensus 11 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 90 (281)
++|++|++++|+++.+| ..+++|++|++++|.++.+|. +.. +|++|++++|.++.+|. .+++|+.|++++
T Consensus 80 ~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~ 149 (571)
T 3cvr_A 80 PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPE----LPALLEYINADN 149 (571)
T ss_dssp TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCC----CCTTCCEEECCS
T ss_pred CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCC----cCccccEEeCCC
Confidence 45666666666666555 345666666666666666655 433 67777777777766665 467777777777
Q ss_pred CcCcccCccccCCCCCcEEEccCCcCCCChhhhhCCCCCCeeecccccccccCCCccccCCCcc-------cEEEcCCCC
Q 023495 91 NKIVILPQSLTHLTSLRVLDARLNCLKSLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSL-------VELDVSYNK 163 (281)
Q Consensus 91 ~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L-------~~L~l~~n~ 163 (281)
|.+..+|. .+++|+.|++++|.++.+|. +. ++|+.|++++| .+..+|. +.. +| +.|++++|.
T Consensus 150 N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N--~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~ 218 (571)
T 3cvr_A 150 NQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTN--LLESLPA-VPV--RNHHSEETEIFFRCRENR 218 (571)
T ss_dssp SCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSS--CCSSCCC-CC----------CCEEEECCSSC
T ss_pred CccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCC--CCCchhh-HHH--hhhcccccceEEecCCCc
Confidence 77777665 46788888888888888777 55 78899999888 4557776 544 67 999999999
Q ss_pred CCCCChhhhcCCCCCEEEccCCCCCCCCHHHHH
Q 023495 164 ITTLPDSIGCLRKLQKLSLEGNPLVSPPMDVVE 196 (281)
Q Consensus 164 i~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 196 (281)
|+.+|..+..+++|+.|+|++|++++..+..+.
T Consensus 219 l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 219 ITHIPENILSLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp CCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred ceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence 999998888899999999999999886655554
No 62
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=9.4e-22 Score=166.81 Aligned_cols=181 Identities=15% Similarity=0.091 Sum_probs=145.8
Q ss_pred ccCCCcEEEccCCCCCcc-chhc--cCCCCCcEEEccCCCCCCc-c----hhhhcCccCceeeccCCcCcccChhHhhcC
Q 023495 9 RLLNVVVLDVHSNQLKCL-PNSI--GCLSKLKVLDVSGNLLESL-P----KTIENCRSLEELNANFNKLRQLPDTIGFEL 80 (281)
Q Consensus 9 ~~~~L~~L~l~~~~l~~l-~~~~--~~l~~L~~L~L~~n~l~~l-~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 80 (281)
.+++|++|++++|++... |..+ ..+++|++|++++|.++.. + ..+..+++|++|++++|.+..+++..+..+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 456799999999998854 5666 8899999999999998852 2 344578899999999999998887766689
Q ss_pred CCCcEEEccCCcCcc---cC--ccccCCCCCcEEEccCCcCCCChhh----hhCCCCCCeeecccccccccCCCccccCC
Q 023495 81 INLKTLSINCNKIVI---LP--QSLTHLTSLRVLDARLNCLKSLPED----LENLINLEVLNISQNFQYLETLPYSIGLL 151 (281)
Q Consensus 81 ~~L~~L~l~~~~l~~---l~--~~~~~l~~L~~L~l~~n~l~~l~~~----~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 151 (281)
++|++|++++|.+.. ++ ..+..+++|++|++++|.++.++.. +..+++|++|++++| ...+..|..+..+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~ 247 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN-SLRATVNPSAPRC 247 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS-CCCCCCCSCCSSC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC-CCCccchhhHHhc
Confidence 999999999998652 32 2346888999999999999877653 578899999999999 4444447666665
Q ss_pred ---CcccEEEcCCCCCCCCChhhhcCCCCCEEEccCCCCCCCCH
Q 023495 152 ---MSLVELDVSYNKITTLPDSIGCLRKLQKLSLEGNPLVSPPM 192 (281)
Q Consensus 152 ---~~L~~L~l~~n~i~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 192 (281)
++|++|++++|+++.+|..+. ++|+.|+|++|.+++++.
T Consensus 248 ~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~ 289 (310)
T 4glp_A 248 MWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ 289 (310)
T ss_dssp CCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC
T ss_pred cCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch
Confidence 699999999999998887664 799999999999988643
No 63
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=2.8e-21 Score=176.72 Aligned_cols=104 Identities=26% Similarity=0.369 Sum_probs=60.2
Q ss_pred CCCcEEEccCCCCCccc-hhccCCCCCcEEEccCCCCCCc-chhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEc
Q 023495 11 LNVVVLDVHSNQLKCLP-NSIGCLSKLKVLDVSGNLLESL-PKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSI 88 (281)
Q Consensus 11 ~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 88 (281)
+++++|++++|.++.++ ..|.++++|++|++++|.++.+ |..|..+++|++|++++|.++.+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC---PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC---CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc---ccccCCEEEC
Confidence 45666666666666553 3556666666666666666655 44555666666666666666655554 4556666666
Q ss_pred cCCcCcccC--ccccCCCCCcEEEccCCcCC
Q 023495 89 NCNKIVILP--QSLTHLTSLRVLDARLNCLK 117 (281)
Q Consensus 89 ~~~~l~~l~--~~~~~l~~L~~L~l~~n~l~ 117 (281)
++|.+..++ ..+.++++|++|++++|.++
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccc
Confidence 666655432 45555555555555555543
No 64
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.85 E-value=2e-20 Score=166.75 Aligned_cols=172 Identities=25% Similarity=0.307 Sum_probs=112.3
Q ss_pred HhccCCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEE
Q 023495 7 TARLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTL 86 (281)
Q Consensus 7 ~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 86 (281)
++++++|++|++++|+++.+| .++.+++|++|++++|.++.+| +..+++|++|++++|.++.++ + ..+++|++|
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~-~~l~~L~~L 111 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--V-TPLTKLTYL 111 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--C-TTCTTCCEE
T ss_pred hhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--c-CCCCcCCEE
Confidence 356778888888888887775 5777788888888888877764 677778888888888777764 2 367778888
Q ss_pred EccCCcCcccCccccCCCCCcEEEccCCcCCCChhhhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCCCC
Q 023495 87 SINCNKIVILPQSLTHLTSLRVLDARLNCLKSLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKITT 166 (281)
Q Consensus 87 ~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 166 (281)
++++|.+..++ +..+++|++|++++|.++.++ ++.+++|+.|++++| ...+.+ .+..+++|+.|++++|.++.
T Consensus 112 ~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n-~~~~~~--~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 112 NCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLN-KKITKL--DVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp ECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTC-SCCCCC--CCTTCTTCCEEECCSSCCCC
T ss_pred ECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCC-Cccccc--ccccCCcCCEEECCCCccce
Confidence 88777777664 667777777777777777653 555666666666655 223322 24444455555555554444
Q ss_pred CCh-------------------hhhcCCCCCEEEccCCCCCCCC
Q 023495 167 LPD-------------------SIGCLRKLQKLSLEGNPLVSPP 191 (281)
Q Consensus 167 ~~~-------------------~~~~l~~L~~L~L~~n~l~~~~ 191 (281)
+|- .+..+++|+.|++++|.+++++
T Consensus 185 l~l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip 228 (457)
T 3bz5_A 185 LDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID 228 (457)
T ss_dssp CCCTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC
T ss_pred eccccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccC
Confidence 430 1445555666666666665544
No 65
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.85 E-value=2.4e-20 Score=174.19 Aligned_cols=155 Identities=30% Similarity=0.307 Sum_probs=84.8
Q ss_pred CCCcEEEccCCCCCccch-hccCCCCCcEEEccCCCCCCc-chhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEc
Q 023495 11 LNVVVLDVHSNQLKCLPN-SIGCLSKLKVLDVSGNLLESL-PKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSI 88 (281)
Q Consensus 11 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 88 (281)
+++++|++++|+++.++. .|.++++|++|++++|.++.+ |..+..+++|++|++++|.++.+++..+..+++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 456666666666665543 355666666666666666544 445556666666666666666665544445666666666
Q ss_pred cCCcCcccC-ccccCCCCCcEEEccCCcCCCC-hhhhhCCCCCCeeecccccccccCCCccc--cCCCcccEEEcCCCCC
Q 023495 89 NCNKIVILP-QSLTHLTSLRVLDARLNCLKSL-PEDLENLINLEVLNISQNFQYLETLPYSI--GLLMSLVELDVSYNKI 164 (281)
Q Consensus 89 ~~~~l~~l~-~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~~~~~L~~L~l~~n~i 164 (281)
++|.+..++ ..+..+++|++|++++|.++.+ +..+.++++|++|++++| ...+..+..+ ..+++|+.|++++|.+
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS-CCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC-cccccCHHHhhccccccccEEECCCCcc
Confidence 666655443 3455566666666666655533 333555566666666655 2222222222 2335555555555555
Q ss_pred CC
Q 023495 165 TT 166 (281)
Q Consensus 165 ~~ 166 (281)
+.
T Consensus 184 ~~ 185 (680)
T 1ziw_A 184 KE 185 (680)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 66
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.85 E-value=2e-20 Score=170.39 Aligned_cols=180 Identities=27% Similarity=0.366 Sum_probs=96.6
Q ss_pred CChhHHhccCCCcEEEccCCCCCcc-c---hhccCCCCCcEEEccCCCCCCcc---hhhhcCccCceeeccCCcCcccCh
Q 023495 2 IPESLTARLLNVVVLDVHSNQLKCL-P---NSIGCLSKLKVLDVSGNLLESLP---KTIENCRSLEELNANFNKLRQLPD 74 (281)
Q Consensus 2 ip~~~~~~~~~L~~L~l~~~~l~~l-~---~~~~~l~~L~~L~L~~n~l~~l~---~~~~~l~~L~~L~L~~n~l~~~~~ 74 (281)
+|..++.++++|++|++++|+++.. | ..++.+++|++|++++|.++.++ ..+..+++|++|++++|.++.+|.
T Consensus 325 ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~ 404 (549)
T 2z81_A 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD 404 (549)
T ss_dssp CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCS
T ss_pred CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCCh
Confidence 3444444555555555555555432 1 11344555555555555555443 234455555555555555555554
Q ss_pred hHhhcCCCCcEEEccCCcCcccCccccCCCCCcEEEccCCcCCCChhhhhCCCCCCeeecccccccccCCCccccCCCcc
Q 023495 75 TIGFELINLKTLSINCNKIVILPQSLTHLTSLRVLDARLNCLKSLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSL 154 (281)
Q Consensus 75 ~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L 154 (281)
.+. .+++|++|++++|.+..+|..+ .++|++|++++|+++.++ ..+++|++|++++| .+..+|. ...+++|
T Consensus 405 ~~~-~~~~L~~L~Ls~N~l~~l~~~~--~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N--~l~~ip~-~~~l~~L 475 (549)
T 2z81_A 405 SCQ-WPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRN--KLKTLPD-ASLFPVL 475 (549)
T ss_dssp CCC-CCTTCCEEECTTSCCSCCCTTS--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSS--CCSSCCC-GGGCTTC
T ss_pred hhc-ccccccEEECCCCCcccccchh--cCCceEEECCCCChhhhc---ccCChhcEEECCCC--ccCcCCC-cccCccC
Confidence 433 4455555555555555444322 135555555555555432 35666667777766 3345554 3456667
Q ss_pred cEEEcCCCCCCCCC-hhhhcCCCCCEEEccCCCCCCC
Q 023495 155 VELDVSYNKITTLP-DSIGCLRKLQKLSLEGNPLVSP 190 (281)
Q Consensus 155 ~~L~l~~n~i~~~~-~~~~~l~~L~~L~L~~n~l~~~ 190 (281)
+.|++++|+++.++ ..+..+++|+.|++++|++...
T Consensus 476 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 476 LVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp CEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred CEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCC
Confidence 77777777666553 4466667777777777766543
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.85 E-value=2.3e-21 Score=164.90 Aligned_cols=178 Identities=23% Similarity=0.175 Sum_probs=125.0
Q ss_pred CCcEEEccCCCCCccch-hccCCCCCcEEEccCCCCCCc-chhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEcc
Q 023495 12 NVVVLDVHSNQLKCLPN-SIGCLSKLKVLDVSGNLLESL-PKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSIN 89 (281)
Q Consensus 12 ~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 89 (281)
+++..+++++.+...+. .+..+++|++|++++|.++.+ |..+..+++|++|++++|.++.+++ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 45666777776665543 356678999999999999987 5789999999999999999987665 3478889999998
Q ss_pred CCcCcccCc-----------------cccCCCCCcEEEccCCcCCCChh-hhhCCCCCCeeecccccccccCCCccc-cC
Q 023495 90 CNKIVILPQ-----------------SLTHLTSLRVLDARLNCLKSLPE-DLENLINLEVLNISQNFQYLETLPYSI-GL 150 (281)
Q Consensus 90 ~~~l~~l~~-----------------~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~ 150 (281)
+|.+..++. ....+++|++|++++|.++.++. .+..+++|+.|++++| ...+..+..+ ..
T Consensus 89 ~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~ 167 (317)
T 3o53_A 89 NNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAAS 167 (317)
T ss_dssp SSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGG
T ss_pred CCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC-CCCcccHHHHhhc
Confidence 887764321 01235667788888888776644 5677777888888777 3333333444 35
Q ss_pred CCcccEEEcCCCCCCCCChhhhcCCCCCEEEccCCCCCCCCHH
Q 023495 151 LMSLVELDVSYNKITTLPDSIGCLRKLQKLSLEGNPLVSPPMD 193 (281)
Q Consensus 151 ~~~L~~L~l~~n~i~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 193 (281)
+++|+.|++++|.++.++.. ..+++|+.|++++|.++++++.
T Consensus 168 l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~ 209 (317)
T 3o53_A 168 SDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPE 209 (317)
T ss_dssp TTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGG
T ss_pred cCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcchhh
Confidence 66777777777777655432 2466777777777777766554
No 68
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.85 E-value=1.3e-20 Score=172.93 Aligned_cols=176 Identities=25% Similarity=0.352 Sum_probs=155.9
Q ss_pred hccCCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEE
Q 023495 8 ARLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLS 87 (281)
Q Consensus 8 ~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 87 (281)
..+++|+.|++++|.+..++ .+..+++|+.|+|++|.++.++. +..+++|++|+|++|.+..++ .+ ..+++|+.|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l-~~l~~L~~L~ 115 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SL-KDLKKLKSLS 115 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TS-TTCTTCCEEE
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hh-ccCCCCCEEE
Confidence 57889999999999999886 58899999999999999998866 889999999999999999876 33 3899999999
Q ss_pred ccCCcCcccCccccCCCCCcEEEccCCcCCCChhhhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCCCCC
Q 023495 88 INCNKIVILPQSLTHLTSLRVLDARLNCLKSLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKITTL 167 (281)
Q Consensus 88 l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~ 167 (281)
+++|.+..++ .+..+++|+.|++++|.++.+ ..+..+++|+.|+|++| .+..++. +..+++|+.|+|++|.++.+
T Consensus 116 Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N--~l~~~~~-l~~l~~L~~L~Ls~N~i~~l 190 (605)
T 1m9s_A 116 LEHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN--QISDIVP-LAGLTKLQNLYLSKNHISDL 190 (605)
T ss_dssp CTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSS--CCCCCGG-GTTCTTCCEEECCSSCCCBC
T ss_pred ecCCCCCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCC--cCCCchh-hccCCCCCEEECcCCCCCCC
Confidence 9999999774 588999999999999999988 67899999999999999 3444443 88999999999999999988
Q ss_pred ChhhhcCCCCCEEEccCCCCCCCCHH
Q 023495 168 PDSIGCLRKLQKLSLEGNPLVSPPMD 193 (281)
Q Consensus 168 ~~~~~~l~~L~~L~L~~n~l~~~~~~ 193 (281)
+ .+..+++|+.|+|++|++...+..
T Consensus 191 ~-~l~~l~~L~~L~L~~N~l~~~p~~ 215 (605)
T 1m9s_A 191 R-ALAGLKNLDVLELFSQECLNKPIN 215 (605)
T ss_dssp G-GGTTCTTCSEEECCSEEEECCCCC
T ss_pred h-HHccCCCCCEEEccCCcCcCCccc
Confidence 5 689999999999999998876543
No 69
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.85 E-value=4.1e-20 Score=165.28 Aligned_cols=176 Identities=25% Similarity=0.350 Sum_probs=114.8
Q ss_pred HhccCCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEE
Q 023495 7 TARLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTL 86 (281)
Q Consensus 7 ~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 86 (281)
+..+++|++|++++|.++.++. +.++++|++|++++|.+..++. +..+++|++|++++|.++.+++ +..+++|++|
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 139 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRL 139 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEE
Confidence 4678888888888888887766 7788888888888888887765 7788888888888888877765 3367778888
Q ss_pred EccCCcCcccCc--------------------cccCCCCCcEEEccCCcCCCChhhhhCCCCCCeeecccccccccCCCc
Q 023495 87 SINCNKIVILPQ--------------------SLTHLTSLRVLDARLNCLKSLPEDLENLINLEVLNISQNFQYLETLPY 146 (281)
Q Consensus 87 ~l~~~~l~~l~~--------------------~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~ 146 (281)
++++|.+..++. .+..+++|+.|++++|.++.++ .+..+++|+.|++++| .....+.
T Consensus 140 ~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n--~l~~~~~ 216 (466)
T 1o6v_A 140 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNN--QISDITP 216 (466)
T ss_dssp EEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSS--CCCCCGG
T ss_pred ECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCC--ccccccc
Confidence 877776654331 1445566666777776666553 3566666666666666 2222221
Q ss_pred cccCCCcccEEEcCCCCCCCCChhhhcCCCCCEEEccCCCCCCCC
Q 023495 147 SIGLLMSLVELDVSYNKITTLPDSIGCLRKLQKLSLEGNPLVSPP 191 (281)
Q Consensus 147 ~~~~~~~L~~L~l~~n~i~~~~~~~~~l~~L~~L~L~~n~l~~~~ 191 (281)
+..+++|+.|++++|.++.++ .+..+++|+.|++++|.+.+.+
T Consensus 217 -~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~ 259 (466)
T 1o6v_A 217 -LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLA 259 (466)
T ss_dssp -GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCG
T ss_pred -ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccch
Confidence 444555555555555555442 3455555555555555555443
No 70
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=6.5e-21 Score=161.65 Aligned_cols=180 Identities=19% Similarity=0.105 Sum_probs=109.3
Q ss_pred CCcEEEccCCCCCc--cch--hccCCCCCcEEEccCCCCCCc-chhh--hcCccCceeeccCCcCcccCh----hHhhcC
Q 023495 12 NVVVLDVHSNQLKC--LPN--SIGCLSKLKVLDVSGNLLESL-PKTI--ENCRSLEELNANFNKLRQLPD----TIGFEL 80 (281)
Q Consensus 12 ~L~~L~l~~~~l~~--l~~--~~~~l~~L~~L~L~~n~l~~l-~~~~--~~l~~L~~L~L~~n~l~~~~~----~~~~~l 80 (281)
.++.+.+.++.++. +.. .+..+++|++|++++|.+... |..+ ..+++|++|++++|.++.... .....+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 45667777766652 111 122345577777777777633 5554 667777777777777664211 111256
Q ss_pred CCCcEEEccCCcCcccC-ccccCCCCCcEEEccCCcCCC---Chhh--hhCCCCCCeeecccccccccCCCc----cccC
Q 023495 81 INLKTLSINCNKIVILP-QSLTHLTSLRVLDARLNCLKS---LPED--LENLINLEVLNISQNFQYLETLPY----SIGL 150 (281)
Q Consensus 81 ~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~l~~---l~~~--~~~l~~L~~L~l~~n~~~~~~~~~----~~~~ 150 (281)
++|++|++++|.+..++ ..+..+++|++|++++|++.. ++.. +..+++|++|++++| .+..++. .+..
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N--~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT--GMETPTGVCAALAAA 222 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS--CCCCHHHHHHHHHHH
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC--CCCchHHHHHHHHhc
Confidence 77777777777776443 456677777777777776552 2222 356677777777777 3333332 1355
Q ss_pred CCcccEEEcCCCCCCCC-ChhhhcC---CCCCEEEccCCCCCCCCHH
Q 023495 151 LMSLVELDVSYNKITTL-PDSIGCL---RKLQKLSLEGNPLVSPPMD 193 (281)
Q Consensus 151 ~~~L~~L~l~~n~i~~~-~~~~~~l---~~L~~L~L~~n~l~~~~~~ 193 (281)
+++|++|++++|.+..+ |..+..+ ++|+.|++++|.++.++..
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~ 269 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKG 269 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhh
Confidence 67777777777777754 5555554 5777777777777766543
No 71
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.85 E-value=2.4e-21 Score=160.48 Aligned_cols=174 Identities=28% Similarity=0.351 Sum_probs=150.6
Q ss_pred ccCCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEc
Q 023495 9 RLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSI 88 (281)
Q Consensus 9 ~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 88 (281)
++.+++.++++++.++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++.+++ + ..+++|++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l-~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-L-KDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-G-TTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-h-ccCCCCCEEEC
Confidence 4556778889999999887 5778899999999999999887 78899999999999999998887 4 48999999999
Q ss_pred cCCcCcccCccccCCCCCcEEEccCCcCCCChhhhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCCCCCC
Q 023495 89 NCNKIVILPQSLTHLTSLRVLDARLNCLKSLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKITTLP 168 (281)
Q Consensus 89 ~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~ 168 (281)
++|.+..++.... ++|+.|++++|.++.++ .+..+++|+.|++++| .+..++ .+..+++|+.|++++|.++.+
T Consensus 93 ~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N--~i~~~~-~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 93 NRNRLKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNN--KLKSIV-MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp CSSCCSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTS--CCCBCG-GGGGCTTCCEEECTTSCCCBC-
T ss_pred CCCccCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCC--cCCCCh-HHccCCCCCEEECCCCcCcch-
Confidence 9999998765433 89999999999999885 5889999999999999 455555 688899999999999999987
Q ss_pred hhhhcCCCCCEEEccCCCCCCCCHH
Q 023495 169 DSIGCLRKLQKLSLEGNPLVSPPMD 193 (281)
Q Consensus 169 ~~~~~l~~L~~L~L~~n~l~~~~~~ 193 (281)
..+..+++|+.|++++|++...+..
T Consensus 166 ~~l~~l~~L~~L~l~~N~~~~~~~~ 190 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQKCVNEPVK 190 (263)
T ss_dssp TTSTTCCCCCEEEEEEEEEECCCEE
T ss_pred HHhccCCCCCEEeCCCCcccCCccc
Confidence 6788999999999999999877643
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=7.1e-21 Score=171.06 Aligned_cols=165 Identities=24% Similarity=0.207 Sum_probs=115.0
Q ss_pred ccchhccCCC----CCcEEEccCCCCCCc-chhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEccCCcCcccCcc
Q 023495 25 CLPNSIGCLS----KLKVLDVSGNLLESL-PKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINCNKIVILPQS 99 (281)
Q Consensus 25 ~l~~~~~~l~----~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~ 99 (281)
.+|..+..+. +|++|++++|.++.+ |..|..+++|++|+|++|.++..++ +..+++|++|++++|.+..++..
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~ 98 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG 98 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC
Confidence 4555554443 899999999999987 5789999999999999999986665 34788888888888877643311
Q ss_pred -----------------ccCCCCCcEEEccCCcCCCC-hhhhhCCCCCCeeecccccccccCCCcccc-CCCcccEEEcC
Q 023495 100 -----------------LTHLTSLRVLDARLNCLKSL-PEDLENLINLEVLNISQNFQYLETLPYSIG-LLMSLVELDVS 160 (281)
Q Consensus 100 -----------------~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~~~~L~~L~l~ 160 (281)
...+++|+.|++++|.++.+ |..++.+++|+.|++++| ...+..|..+. .+++|+.|+++
T Consensus 99 ~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls 177 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQ 177 (487)
T ss_dssp TTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECT
T ss_pred CCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecC
Confidence 12346677777777777765 335677777777777777 34444455554 56677777777
Q ss_pred CCCCCCCChhhhcCCCCCEEEccCCCCCCCCHH
Q 023495 161 YNKITTLPDSIGCLRKLQKLSLEGNPLVSPPMD 193 (281)
Q Consensus 161 ~n~i~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 193 (281)
+|.++.++. ...+++|+.|+|++|.++++++.
T Consensus 178 ~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~ 209 (487)
T 3oja_A 178 YNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPE 209 (487)
T ss_dssp TSCCCEEEC-CCCCTTCCEEECCSSCCCEECGG
T ss_pred CCccccccc-cccCCCCCEEECCCCCCCCCCHh
Confidence 777665543 23466677777777776666554
No 73
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=2.1e-20 Score=172.55 Aligned_cols=174 Identities=26% Similarity=0.290 Sum_probs=101.4
Q ss_pred CCcEEEccCCCCCccc-hhccCCCCCcEEEccCCCCCCcc-hhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEcc
Q 023495 12 NVVVLDVHSNQLKCLP-NSIGCLSKLKVLDVSGNLLESLP-KTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSIN 89 (281)
Q Consensus 12 ~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 89 (281)
.+++|+|++|+|+.++ .+|.++++|++|+|++|.|+.++ .+|..+++|++|+|++|+++.+++..+.++++|++|+++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 5666666666666664 34666666666666666666663 346666666666666666666666655566666666666
Q ss_pred CCcCcccCc-cccCCCCCcEEEccCCcCC--CChhhhhCCCCCCeeecccccccccCCCccccCCCc----ccEEEcCCC
Q 023495 90 CNKIVILPQ-SLTHLTSLRVLDARLNCLK--SLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMS----LVELDVSYN 162 (281)
Q Consensus 90 ~~~l~~l~~-~~~~l~~L~~L~l~~n~l~--~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~----L~~L~l~~n 162 (281)
+|.++.++. .++++++|++|++++|.++ .+|..+..+++|++|++++| ...+..+..+..+.+ ...++++.|
T Consensus 133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc-cccccccccccchhhhhhhhhhhhcccC
Confidence 666665543 3566666666666666665 23455666666666666666 233333333333222 235666666
Q ss_pred CCCCCChhhhcCCCCCEEEccCCC
Q 023495 163 KITTLPDSIGCLRKLQKLSLEGNP 186 (281)
Q Consensus 163 ~i~~~~~~~~~l~~L~~L~L~~n~ 186 (281)
.+..++........+..+++.+|.
T Consensus 212 ~l~~i~~~~~~~~~~~~l~l~~n~ 235 (635)
T 4g8a_A 212 PMNFIQPGAFKEIRLHKLTLRNNF 235 (635)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCC
T ss_pred cccccCcccccchhhhhhhhhccc
Confidence 666554444444445556665553
No 74
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.83 E-value=1.5e-19 Score=161.12 Aligned_cols=173 Identities=25% Similarity=0.285 Sum_probs=134.7
Q ss_pred HhccCCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEE
Q 023495 7 TARLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTL 86 (281)
Q Consensus 7 ~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 86 (281)
+..+++|++|++++|+++.++ ++.+++|++|++++|.++.++ +..+++|++|++++|.++.++ + ..+++|++|
T Consensus 60 l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~-~~l~~L~~L 132 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--V-SQNPLLTYL 132 (457)
T ss_dssp GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--C-TTCTTCCEE
T ss_pred hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--C-CCCCcCCEE
Confidence 478888888888888888875 778888888888888888774 677888888888888887765 2 367777777
Q ss_pred EccCCcCcccCc--------------------cccCCCCCcEEEccCCcCCCChhhhhCCCCCCeeecccccccccCCCc
Q 023495 87 SINCNKIVILPQ--------------------SLTHLTSLRVLDARLNCLKSLPEDLENLINLEVLNISQNFQYLETLPY 146 (281)
Q Consensus 87 ~l~~~~l~~l~~--------------------~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~ 146 (281)
++++|.+..++- .+..+++|+.|++++|.++.+| +..+++|+.|++++| ....+
T Consensus 133 ~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N--~l~~~-- 206 (457)
T 3bz5_A 133 NCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTN--NITKL-- 206 (457)
T ss_dssp ECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSS--CCSCC--
T ss_pred ECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec--cccCCCCCEEECcCC--cCCee--
Confidence 777777664421 2445666777777777777765 677788888888888 33333
Q ss_pred cccCCCcccEEEcCCCCCCCCChhhhcCCCCCEEEccCCCCCCCCHHH
Q 023495 147 SIGLLMSLVELDVSYNKITTLPDSIGCLRKLQKLSLEGNPLVSPPMDV 194 (281)
Q Consensus 147 ~~~~~~~L~~L~l~~n~i~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 194 (281)
.+..+++|+.|++++|+++.+| +..+++|+.|++++|.+++.+...
T Consensus 207 ~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~~ 252 (457)
T 3bz5_A 207 DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVST 252 (457)
T ss_dssp CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTT
T ss_pred ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcCHHH
Confidence 3778899999999999999987 889999999999999999987543
No 75
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.83 E-value=3.9e-21 Score=175.72 Aligned_cols=181 Identities=24% Similarity=0.219 Sum_probs=88.0
Q ss_pred HhccCCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcchhh--------------------hcCccCceeeccC
Q 023495 7 TARLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTI--------------------ENCRSLEELNANF 66 (281)
Q Consensus 7 ~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~~--------------------~~l~~L~~L~L~~ 66 (281)
+..+++|++|++++|.++.+|..+..+ +|++|++++|.+..+|... ..+++|++|++++
T Consensus 278 ~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~ 356 (570)
T 2z63_A 278 FNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSR 356 (570)
T ss_dssp TGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCS
T ss_pred hcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcC
Confidence 466777888888877777776665555 5555555555554433210 2344555555555
Q ss_pred CcCccc---ChhHhhcCCCCcEEEccCCcCcccCccccCCCCCcEEEccCCcCCCChh--hhhCCCCCCeeecccccccc
Q 023495 67 NKLRQL---PDTIGFELINLKTLSINCNKIVILPQSLTHLTSLRVLDARLNCLKSLPE--DLENLINLEVLNISQNFQYL 141 (281)
Q Consensus 67 n~l~~~---~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~--~~~~l~~L~~L~l~~n~~~~ 141 (281)
|.++.. +..+ ..+++|++|++++|.+..++..+..+++|+.|++++|.+..++. .+..+++|+.|++++| ...
T Consensus 357 n~l~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~ 434 (570)
T 2z63_A 357 NGLSFKGCCSQSD-FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTR 434 (570)
T ss_dssp SCCBEEEEEEHHH-HTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTS-CCE
T ss_pred CccCccccccccc-cccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCC-ccc
Confidence 555433 2222 24555555555555554444334445555555555544443221 2444444444444444 222
Q ss_pred cCCCccccCCCcccEEEcCCCCCC--CCChhhhcCCCCCEEEccCCCCCCC
Q 023495 142 ETLPYSIGLLMSLVELDVSYNKIT--TLPDSIGCLRKLQKLSLEGNPLVSP 190 (281)
Q Consensus 142 ~~~~~~~~~~~~L~~L~l~~n~i~--~~~~~~~~l~~L~~L~L~~n~l~~~ 190 (281)
+..+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+++.
T Consensus 435 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~ 485 (570)
T 2z63_A 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485 (570)
T ss_dssp ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccC
Confidence 333333444444444444444443 2344444444444444444444443
No 76
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.83 E-value=1.7e-20 Score=171.44 Aligned_cols=184 Identities=25% Similarity=0.257 Sum_probs=96.5
Q ss_pred ccCCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCc---chhhhcCccCceeeccCCcCcccChhHhhcCCCCcE
Q 023495 9 RLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESL---PKTIENCRSLEELNANFNKLRQLPDTIGFELINLKT 85 (281)
Q Consensus 9 ~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 85 (281)
.+++|++|++++|.+...... ..+++|++|++++|.++.. +..+..+++|++|++++|.+..++.. +..+++|++
T Consensus 323 ~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~ 400 (570)
T 2z63_A 323 KLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEH 400 (570)
T ss_dssp BCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCE
T ss_pred cccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCE
Confidence 455566666666554433221 4455566666666555533 44555555566666665555555444 225555555
Q ss_pred EEccCCcCcccC--ccccCCCCCcEEEccCCcCC-CChhhhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCC
Q 023495 86 LSINCNKIVILP--QSLTHLTSLRVLDARLNCLK-SLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYN 162 (281)
Q Consensus 86 L~l~~~~l~~l~--~~~~~l~~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n 162 (281)
|++++|.+...+ ..+..+++|++|++++|.+. ..+..+..+++|+.|++++|....+.+|..+..+++|+.|++++|
T Consensus 401 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n 480 (570)
T 2z63_A 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480 (570)
T ss_dssp EECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred EEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC
Confidence 555555555332 23455555555555555554 233345555555555555552111234555555555555555555
Q ss_pred CCCCC-ChhhhcCCCCCEEEccCCCCCCCCHHH
Q 023495 163 KITTL-PDSIGCLRKLQKLSLEGNPLVSPPMDV 194 (281)
Q Consensus 163 ~i~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~ 194 (281)
.++.+ |..+..+++|+.|++++|.++++++..
T Consensus 481 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 513 (570)
T 2z63_A 481 QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI 513 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred ccccCChhhhhcccCCCEEeCCCCcCCCCCHHH
Confidence 55543 445555555555555555555554443
No 77
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.83 E-value=1.4e-19 Score=163.85 Aligned_cols=175 Identities=25% Similarity=0.350 Sum_probs=142.2
Q ss_pred CCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCC-cchhhhcCccCceeeccCCcCcccCh--hHhhcCCCCcEEE
Q 023495 11 LNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLES-LPKTIENCRSLEELNANFNKLRQLPD--TIGFELINLKTLS 87 (281)
Q Consensus 11 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~ 87 (281)
.+|+.|++++|++..++. +..+++|++|++++|.++. +|..+..+++|++|++++|.++.++. ..+..+++|++|+
T Consensus 302 ~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~ 380 (520)
T 2z7x_B 302 MNIKNFTVSGTRMVHMLC-PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380 (520)
T ss_dssp CCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEE
T ss_pred CceeEEEcCCCccccccc-hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEE
Confidence 456677777766654431 2678899999999999986 57888899999999999999986543 3344899999999
Q ss_pred ccCCcCcc-cCcc-ccCCCCCcEEEccCCcCC-CChhhhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCC
Q 023495 88 INCNKIVI-LPQS-LTHLTSLRVLDARLNCLK-SLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKI 164 (281)
Q Consensus 88 l~~~~l~~-l~~~-~~~l~~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i 164 (281)
+++|.+.. +|.. +..+++|++|++++|.++ .++..+. ++|+.|++++| .+..+|..+..+++|+.|++++|.+
T Consensus 381 Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N--~l~~ip~~~~~l~~L~~L~L~~N~l 456 (520)
T 2z7x_B 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN--KIKSIPKQVVKLEALQELNVASNQL 456 (520)
T ss_dssp CCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS--CCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC--cccccchhhhcCCCCCEEECCCCcC
Confidence 99999986 7764 778899999999999986 4444443 78999999999 5568888888999999999999999
Q ss_pred CCCChh-hhcCCCCCEEEccCCCCCCC
Q 023495 165 TTLPDS-IGCLRKLQKLSLEGNPLVSP 190 (281)
Q Consensus 165 ~~~~~~-~~~l~~L~~L~L~~n~l~~~ 190 (281)
+.+|.. +..+++|+.|++++|++...
T Consensus 457 ~~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 457 KSVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CccCHHHhccCCcccEEECcCCCCccc
Confidence 998875 88899999999999999764
No 78
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.83 E-value=4.1e-19 Score=158.80 Aligned_cols=174 Identities=28% Similarity=0.380 Sum_probs=125.6
Q ss_pred HhccCCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEE
Q 023495 7 TARLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTL 86 (281)
Q Consensus 7 ~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 86 (281)
+.++++|++|++++|.++.++ .+..+++|++|++++|.+..+++ +..+++|++|++++|.++.++. + ..+++|+.|
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-l-~~l~~L~~L 248 (466)
T 1o6v_A 173 LANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGT-L-ASLTNLTDL 248 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-G-GGCTTCSEE
T ss_pred hccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccchh-h-hcCCCCCEE
Confidence 577888888888888887764 37778888888888888877643 6677888888888887776643 2 367788888
Q ss_pred EccCCcCcccCccccCCCCCcEEEccCCcCCCChhhhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCCCC
Q 023495 87 SINCNKIVILPQSLTHLTSLRVLDARLNCLKSLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKITT 166 (281)
Q Consensus 87 ~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 166 (281)
++++|.+..++. +..+++|+.|++++|.++.++. +..+++|+.|++++| ....++. +..+++|+.|++++|.++.
T Consensus 249 ~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n--~l~~~~~-~~~l~~L~~L~L~~n~l~~ 323 (466)
T 1o6v_A 249 DLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNEN--QLEDISP-ISNLKNLTYLTLYFNNISD 323 (466)
T ss_dssp ECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSS--CCSCCGG-GGGCTTCSEEECCSSCCSC
T ss_pred ECCCCccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCC--cccCchh-hcCCCCCCEEECcCCcCCC
Confidence 888877775544 6677777778877777776655 677777777777777 3333332 6667777777777777776
Q ss_pred CChhhhcCCCCCEEEccCCCCCCC
Q 023495 167 LPDSIGCLRKLQKLSLEGNPLVSP 190 (281)
Q Consensus 167 ~~~~~~~l~~L~~L~L~~n~l~~~ 190 (281)
++. +..+++|+.|++++|.+++.
T Consensus 324 ~~~-~~~l~~L~~L~l~~n~l~~~ 346 (466)
T 1o6v_A 324 ISP-VSSLTKLQRLFFYNNKVSDV 346 (466)
T ss_dssp CGG-GGGCTTCCEEECCSSCCCCC
T ss_pred chh-hccCccCCEeECCCCccCCc
Confidence 544 56777777777777777665
No 79
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.83 E-value=1.2e-20 Score=180.22 Aligned_cols=113 Identities=23% Similarity=0.231 Sum_probs=78.9
Q ss_pred HHhccCCCcEEEccCCC-CCcc-chhccCCCCCcEEEccCCCCCCc-chhhhcCccCceeeccCCcCcc-cCh-hHhhcC
Q 023495 6 LTARLLNVVVLDVHSNQ-LKCL-PNSIGCLSKLKVLDVSGNLLESL-PKTIENCRSLEELNANFNKLRQ-LPD-TIGFEL 80 (281)
Q Consensus 6 ~~~~~~~L~~L~l~~~~-l~~l-~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~l~~-~~~-~~~~~l 80 (281)
.|.++++|++|++++|. +..+ |..|.++++|++|+|++|.+..+ |..|..+++|++|++++|.+.. ++. ..+..+
T Consensus 43 ~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L 122 (844)
T 3j0a_A 43 SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122 (844)
T ss_dssp SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccccc
Confidence 35777788888887774 4455 55677778888888888877765 6677777788888888777764 232 223467
Q ss_pred CCCcEEEccCCcCccc--CccccCCCCCcEEEccCCcCCC
Q 023495 81 INLKTLSINCNKIVIL--PQSLTHLTSLRVLDARLNCLKS 118 (281)
Q Consensus 81 ~~L~~L~l~~~~l~~l--~~~~~~l~~L~~L~l~~n~l~~ 118 (281)
++|++|++++|.+..+ +..+.++++|++|++++|.++.
T Consensus 123 ~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 7777888777777644 2457777777777777777653
No 80
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.82 E-value=2e-20 Score=163.40 Aligned_cols=63 Identities=19% Similarity=0.188 Sum_probs=32.0
Q ss_pred hccCCCcEEEccCCCCCc----cchh-------ccCCCCCcEEEccCCCCCC-----cchhhhcCccCceeeccCCcCc
Q 023495 8 ARLLNVVVLDVHSNQLKC----LPNS-------IGCLSKLKVLDVSGNLLES-----LPKTIENCRSLEELNANFNKLR 70 (281)
Q Consensus 8 ~~~~~L~~L~l~~~~l~~----l~~~-------~~~l~~L~~L~L~~n~l~~-----l~~~~~~l~~L~~L~L~~n~l~ 70 (281)
.++++|++|++++|.+.. +|.. +..+++|++|++++|.++. ++..+..+++|++|++++|.++
T Consensus 57 ~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 57 ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp TTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred HhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 455555556555553331 1222 2455555555555555553 3445555555555555555554
No 81
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.82 E-value=1.1e-19 Score=143.98 Aligned_cols=153 Identities=19% Similarity=0.264 Sum_probs=126.1
Q ss_pred cCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEccCCcCcc-cCccccCCCCCcEE
Q 023495 31 GCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINCNKIVI-LPQSLTHLTSLRVL 109 (281)
Q Consensus 31 ~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~l~~L~~L 109 (281)
..+++|++|++++|.++.+| .+..+++|++|++++|.++.++ .+. .+++|++|++++|.+.. .+..+..+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGT-TCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhh-cCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 56678889999998888887 6888889999999988777664 333 78899999999998884 57778889999999
Q ss_pred EccCCcCCC-ChhhhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCCCCCChhhhcCCCCCEEEccCCCCC
Q 023495 110 DARLNCLKS-LPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKITTLPDSIGCLRKLQKLSLEGNPLV 188 (281)
Q Consensus 110 ~l~~n~l~~-l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~l~~L~~L~L~~n~l~ 188 (281)
++++|.++. .+..+..+++|+.|++++| ..++.++ .+..+++|+.|++++|.++.++ .+..+++|+.|++++|++.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n-~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYN-GAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSC-TBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCC-CCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence 999999884 6677899999999999999 3366666 6888999999999999999887 7889999999999999885
Q ss_pred C
Q 023495 189 S 189 (281)
Q Consensus 189 ~ 189 (281)
+
T Consensus 195 ~ 195 (197)
T 4ezg_A 195 G 195 (197)
T ss_dssp -
T ss_pred C
Confidence 4
No 82
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.81 E-value=1.9e-19 Score=142.58 Aligned_cols=151 Identities=17% Similarity=0.167 Sum_probs=130.3
Q ss_pred hccCCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcc-cChhHhhcCCCCcEE
Q 023495 8 ARLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQ-LPDTIGFELINLKTL 86 (281)
Q Consensus 8 ~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L 86 (281)
..+++|++|++++|+++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++. .+..+ ..+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNL-SGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCC-TTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhh-cCCCCCCEE
Confidence 57889999999999999888 6889999999999999887764 78889999999999999986 34444 489999999
Q ss_pred EccCCcCcc-cCccccCCCCCcEEEccCCc-CCCChhhhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCC
Q 023495 87 SINCNKIVI-LPQSLTHLTSLRVLDARLNC-LKSLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKI 164 (281)
Q Consensus 87 ~l~~~~l~~-l~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i 164 (281)
++++|.+.. .+..+..+++|++|++++|. ++.++ .+..+++|+.|++++| .+..++ .+..+++|+.|++++|+|
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n--~i~~~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD--GVHDYR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB--CCCCCT-TGGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC--CCcChH-HhccCCCCCEEEeeCccc
Confidence 999999984 66778999999999999998 88887 7899999999999999 455555 788999999999999987
Q ss_pred C
Q 023495 165 T 165 (281)
Q Consensus 165 ~ 165 (281)
.
T Consensus 194 ~ 194 (197)
T 4ezg_A 194 G 194 (197)
T ss_dssp -
T ss_pred C
Confidence 5
No 83
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.81 E-value=2.8e-20 Score=177.74 Aligned_cols=182 Identities=19% Similarity=0.203 Sum_probs=148.7
Q ss_pred cCCCcEEEccCCCCCcc-chhccCCCCCcEEEccCCC-CCCc-chhhhcCccCceeeccCCcCcccChhHhhcCCCCcEE
Q 023495 10 LLNVVVLDVHSNQLKCL-PNSIGCLSKLKVLDVSGNL-LESL-PKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTL 86 (281)
Q Consensus 10 ~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~L~~n~-l~~l-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 86 (281)
.+++++|++++|.++.+ +..|.++++|++|++++|. +..+ |..|.++++|++|+|++|.+..+++..+..+++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 57899999999999987 6789999999999999994 4466 7789999999999999999998877666699999999
Q ss_pred EccCCcCcc-cCcc--ccCCCCCcEEEccCCcCCCC--hhhhhCCCCCCeeecccccccccCCCccccCC--CcccEEEc
Q 023495 87 SINCNKIVI-LPQS--LTHLTSLRVLDARLNCLKSL--PEDLENLINLEVLNISQNFQYLETLPYSIGLL--MSLVELDV 159 (281)
Q Consensus 87 ~l~~~~l~~-l~~~--~~~l~~L~~L~l~~n~l~~l--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~~L~~L~l 159 (281)
++++|.+.. ++.. +..+++|++|++++|.++.+ +..++++++|++|++++| ...+..+..+..+ ++|+.|++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N-~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN-QIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS-CCCCCCSGGGHHHHHCSSCCCEE
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC-cCCeeCHHHcccccCCccceEEC
Confidence 999999884 4544 88999999999999999865 356999999999999999 4555566667665 77888888
Q ss_pred CCCCCC-CCChhhhcCCC------CCEEEccCCCCCCCCH
Q 023495 160 SYNKIT-TLPDSIGCLRK------LQKLSLEGNPLVSPPM 192 (281)
Q Consensus 160 ~~n~i~-~~~~~~~~l~~------L~~L~L~~n~l~~~~~ 192 (281)
++|.+. ..|..+..+++ |+.|++++|.+....+
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 221 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDIT 221 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTT
T ss_pred CCCccccccccchhhcCCccccCceeEEecCCCcCchhHH
Confidence 888777 34544554444 7888888887665433
No 84
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=1.6e-19 Score=156.35 Aligned_cols=174 Identities=28% Similarity=0.345 Sum_probs=148.9
Q ss_pred CcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcch-hhh-cCccCceeeccCCcCcccChhHhhcCCCCcEEEccC
Q 023495 13 VVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPK-TIE-NCRSLEELNANFNKLRQLPDTIGFELINLKTLSINC 90 (281)
Q Consensus 13 L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~-~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 90 (281)
-+.+++++++++.+|..+. ..++.|+|++|.++.++. .+. .+++|++|+|++|.++.+++..+..+++|++|++++
T Consensus 20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 3689999999999987664 468999999999998854 455 899999999999999999987777999999999999
Q ss_pred CcCcccCc-cccCCCCCcEEEccCCcCCCC-hhhhhCCCCCCeeecccccccccCCCccc----cCCCcccEEEcCCCCC
Q 023495 91 NKIVILPQ-SLTHLTSLRVLDARLNCLKSL-PEDLENLINLEVLNISQNFQYLETLPYSI----GLLMSLVELDVSYNKI 164 (281)
Q Consensus 91 ~~l~~l~~-~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~----~~~~~L~~L~l~~n~i 164 (281)
|.+..++. .+..+++|+.|++++|.++.+ +..+..+++|+.|++++| .+..+|..+ ..+++|+.|+|++|.+
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N--~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN--QISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS--CCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC--cCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 99997765 588999999999999999976 457999999999999999 556666554 5689999999999999
Q ss_pred CCCC-hhhhcCCC--CCEEEccCCCCCCC
Q 023495 165 TTLP-DSIGCLRK--LQKLSLEGNPLVSP 190 (281)
Q Consensus 165 ~~~~-~~~~~l~~--L~~L~L~~n~l~~~ 190 (281)
+.+| ..+..++. ++.|+|++|++...
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred CccCHHHhhhccHhhcceEEecCCCccCC
Confidence 9987 56788887 48899999999764
No 85
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=5.5e-19 Score=143.32 Aligned_cols=151 Identities=30% Similarity=0.389 Sum_probs=98.5
Q ss_pred cEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEccCCcCcccCc-cccCCCCCcEEEccCCc
Q 023495 37 KVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINCNKIVILPQ-SLTHLTSLRVLDARLNC 115 (281)
Q Consensus 37 ~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~ 115 (281)
+.++.+++.++.+|..+. ++|++|++++|.++.+++..+..+++|++|++++|.+..++. .+..+++|+.|++++|.
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 445555555555554332 455555555555555544444455566666666666555543 34566666666666666
Q ss_pred CCCChhh-hhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCCCCCC-hhhhcCCCCCEEEccCCCCCCCC
Q 023495 116 LKSLPED-LENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKITTLP-DSIGCLRKLQKLSLEGNPLVSPP 191 (281)
Q Consensus 116 l~~l~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~l~~L~~L~L~~n~l~~~~ 191 (281)
++.++.. +..+++|+.|++++| .+..+|..+..+++|+.|++++|.++.++ ..+..+++|+.|++++|++....
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N--~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCN--KLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS--CCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CCccChhHhCcchhhCeEeccCC--cccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 6665543 566677777777777 44466767777888888888888888776 46788899999999999987654
No 86
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=7.6e-19 Score=161.63 Aligned_cols=85 Identities=35% Similarity=0.451 Sum_probs=64.4
Q ss_pred CCCcEEEccCCcCCCChhhhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCCCCCChhhhcCCCCCEEEcc
Q 023495 104 TSLRVLDARLNCLKSLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKITTLPDSIGCLRKLQKLSLE 183 (281)
Q Consensus 104 ~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~l~~L~~L~L~ 183 (281)
++|+.|++++|.++.+| ..+++|+.|++++| .+..+|. .+++|+.|++++|.++.+|..+..+++|+.|+|+
T Consensus 221 ~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N--~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLP---VLPSELKELMVSGN--RLTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLE 292 (622)
T ss_dssp TTCCEEECCSSCCSCCC---CCCTTCCEEECCSS--CCSCCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECC
T ss_pred CCCCEEEccCCccCcCC---CCCCcCcEEECCCC--CCCcCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEec
Confidence 45666666666666655 34567777777777 4455665 5678999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHH
Q 023495 184 GNPLVSPPMDVVE 196 (281)
Q Consensus 184 ~n~l~~~~~~~~~ 196 (281)
+|++++..+..+.
T Consensus 293 ~N~l~~~~~~~l~ 305 (622)
T 3g06_A 293 GNPLSERTLQALR 305 (622)
T ss_dssp SCCCCHHHHHHHH
T ss_pred CCCCCCcCHHHHH
Confidence 9999876555443
No 87
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=3.3e-19 Score=162.25 Aligned_cols=162 Identities=33% Similarity=0.456 Sum_probs=140.7
Q ss_pred CCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEccC
Q 023495 11 LNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINC 90 (281)
Q Consensus 11 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 90 (281)
.++++|++++|+++.+|..+. ++|++|++++|.++.+| ..+++|++|++++|.++.+|. +. . +|++|++++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~-~--~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LP-A--SLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CC-T--TCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hh-c--CCCEEECCC
Confidence 399999999999999987663 78999999999999998 457999999999999999888 43 3 999999999
Q ss_pred CcCcccCccccCCCCCcEEEccCCcCCCChhhhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCCCCCChh
Q 023495 91 NKIVILPQSLTHLTSLRVLDARLNCLKSLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKITTLPDS 170 (281)
Q Consensus 91 ~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~ 170 (281)
|.+..+|. .+++|+.|++++|.++.+|. .+++|+.|++++| .+..+|. +. ++|+.|++++|.|+.+|.
T Consensus 130 N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N--~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~- 197 (571)
T 3cvr_A 130 NQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNN--QLTFLPE-LP--ESLEALDVSTNLLESLPA- 197 (571)
T ss_dssp SCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS--CCSCCCC-CC--TTCCEEECCSSCCSSCCC-
T ss_pred CcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCC--CCCCcch-hh--CCCCEEECcCCCCCchhh-
Confidence 99998887 68999999999999999886 6789999999999 4555777 65 899999999999999988
Q ss_pred hhcCCCC-------CEEEccCCCCCCCCHHHH
Q 023495 171 IGCLRKL-------QKLSLEGNPLVSPPMDVV 195 (281)
Q Consensus 171 ~~~l~~L-------~~L~L~~n~l~~~~~~~~ 195 (281)
+.. +| +.|+|++|.|+.+|..+.
T Consensus 198 ~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~ 227 (571)
T 3cvr_A 198 VPV--RNHHSEETEIFFRCRENRITHIPENIL 227 (571)
T ss_dssp CC----------CCEEEECCSSCCCCCCGGGG
T ss_pred HHH--hhhcccccceEEecCCCcceecCHHHh
Confidence 554 77 999999999999886543
No 88
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.80 E-value=2.6e-19 Score=148.28 Aligned_cols=153 Identities=27% Similarity=0.332 Sum_probs=136.6
Q ss_pred HhccCCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEE
Q 023495 7 TARLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTL 86 (281)
Q Consensus 7 ~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 86 (281)
+..+++|++|++++|+++.++ .+..+++|++|++++|.++.++. +..+++|++|++++|.++.++... . ++|++|
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~--~-~~L~~L 111 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIP--S-ACLSRL 111 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCC--C-SSCCEE
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCccc--c-CcccEE
Confidence 478999999999999999987 68899999999999999999976 899999999999999999887643 3 899999
Q ss_pred EccCCcCcccCccccCCCCCcEEEccCCcCCCChhhhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCCCC
Q 023495 87 SINCNKIVILPQSLTHLTSLRVLDARLNCLKSLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKITT 166 (281)
Q Consensus 87 ~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 166 (281)
++++|.+..++ .+..+++|+.|++++|.++.++ .+..+++|+.|++++| .+..+ ..+..+++|+.|++++|.+..
T Consensus 112 ~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N--~i~~~-~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 112 FLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGN--EITNT-GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp ECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTS--CCCBC-TTSTTCCCCCEEEEEEEEEEC
T ss_pred EccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCC--cCcch-HHhccCCCCCEEeCCCCcccC
Confidence 99999999875 5889999999999999999886 7899999999999999 44444 578899999999999999886
Q ss_pred CCh
Q 023495 167 LPD 169 (281)
Q Consensus 167 ~~~ 169 (281)
.|.
T Consensus 187 ~~~ 189 (263)
T 1xeu_A 187 EPV 189 (263)
T ss_dssp CCE
T ss_pred Ccc
Confidence 653
No 89
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.80 E-value=2.3e-19 Score=165.69 Aligned_cols=179 Identities=26% Similarity=0.258 Sum_probs=151.9
Q ss_pred cEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcc-hhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEccCCc
Q 023495 14 VVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLP-KTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINCNK 92 (281)
Q Consensus 14 ~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~ 92 (281)
+..+.++-+++++|..+. +.+++|+|++|.|+.++ ..|.++++|++|+|++|.++.+++..+..+++|++|++++|.
T Consensus 34 ~~~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp TEEECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CEEECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence 467888888999997653 47999999999999995 579999999999999999999999888799999999999999
Q ss_pred CcccCc-cccCCCCCcEEEccCCcCCCChh-hhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCCCCCC-h
Q 023495 93 IVILPQ-SLTHLTSLRVLDARLNCLKSLPE-DLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKITTLP-D 169 (281)
Q Consensus 93 l~~l~~-~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~-~ 169 (281)
++.+|. .|.++++|++|++++|+++.++. .++++++|++|++++|.......|..+..+++|++|++++|.++.++ .
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence 998875 58999999999999999998876 48999999999999993223356778899999999999999999664 5
Q ss_pred hhhcCCC----CCEEEccCCCCCCCCHHH
Q 023495 170 SIGCLRK----LQKLSLEGNPLVSPPMDV 194 (281)
Q Consensus 170 ~~~~l~~----L~~L~L~~n~l~~~~~~~ 194 (281)
.+..+.+ ...++++.|.+..+++..
T Consensus 192 ~l~~L~~l~~~~~~~~ls~n~l~~i~~~~ 220 (635)
T 4g8a_A 192 DLRVLHQMPLLNLSLDLSLNPMNFIQPGA 220 (635)
T ss_dssp GGHHHHTCTTCCCEEECTTCCCCEECTTT
T ss_pred cccchhhhhhhhhhhhcccCcccccCccc
Confidence 5555443 347899999988765443
No 90
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.80 E-value=9.7e-19 Score=159.91 Aligned_cols=175 Identities=22% Similarity=0.300 Sum_probs=148.9
Q ss_pred CCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCC-cchhhhcCccCceeeccCCcCcccCh--hHhhcCCCCcEEE
Q 023495 11 LNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLES-LPKTIENCRSLEELNANFNKLRQLPD--TIGFELINLKTLS 87 (281)
Q Consensus 11 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~ 87 (281)
.+|++|++++|.+..++. ...+++|++|++++|.++. +|..+..+++|++|++++|.++.++. ..+..+++|++|+
T Consensus 331 ~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ 409 (562)
T 3a79_B 331 MNIKMLSISDTPFIHMVC-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLD 409 (562)
T ss_dssp CCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEE
T ss_pred CcceEEEccCCCcccccC-ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEE
Confidence 568888888888765431 2678999999999999996 58889999999999999999998764 3345899999999
Q ss_pred ccCCcCcc-cCcc-ccCCCCCcEEEccCCcCC-CChhhhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCC
Q 023495 88 INCNKIVI-LPQS-LTHLTSLRVLDARLNCLK-SLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKI 164 (281)
Q Consensus 88 l~~~~l~~-l~~~-~~~l~~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i 164 (281)
+++|.+.. +|.. +..+++|+.|++++|.++ .++..+. ++|+.|++++| .+..+|..+..+++|+.|++++|++
T Consensus 410 l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N--~l~~ip~~~~~l~~L~~L~L~~N~l 485 (562)
T 3a79_B 410 VSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN--RIMSIPKDVTHLQALQELNVASNQL 485 (562)
T ss_dssp CTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS--CCCCCCTTTTSSCCCSEEECCSSCC
T ss_pred CCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCC--cCcccChhhcCCCCCCEEECCCCCC
Confidence 99999986 7764 788999999999999987 3343333 69999999999 5668888888999999999999999
Q ss_pred CCCChh-hhcCCCCCEEEccCCCCCCC
Q 023495 165 TTLPDS-IGCLRKLQKLSLEGNPLVSP 190 (281)
Q Consensus 165 ~~~~~~-~~~l~~L~~L~L~~n~l~~~ 190 (281)
+.+|.. +..+++|+.|++++|++...
T Consensus 486 ~~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 486 KSVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp CCCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred CCCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 999876 89999999999999999864
No 91
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=1.3e-19 Score=144.68 Aligned_cols=172 Identities=27% Similarity=0.291 Sum_probs=130.0
Q ss_pred CcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcch-hhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEccCC
Q 023495 13 VVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPK-TIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINCN 91 (281)
Q Consensus 13 L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~ 91 (281)
-+.+++++++++.+|..+ .++|++|++++|.++.++. .+..+++|++|++++|.++.++...+..+++|++|++++|
T Consensus 9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 357788888888887544 3578888888888887754 4678888888888888888888776667888888888888
Q ss_pred cCcccCcc-ccCCCCCcEEEccCCcCCCChhh-hhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCCCCCCh
Q 023495 92 KIVILPQS-LTHLTSLRVLDARLNCLKSLPED-LENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKITTLPD 169 (281)
Q Consensus 92 ~l~~l~~~-~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~ 169 (281)
.+..++.. +..+++|++|++++|.++.++.. +..+++|++|++++| ...+..+..+..+++|+.|++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~---- 161 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWD---- 161 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCee----
Confidence 88866554 67888888888888888877654 678888888888888 333333334777888888888888554
Q ss_pred hhhcCCCCCEEEccCCCCCCCCHH
Q 023495 170 SIGCLRKLQKLSLEGNPLVSPPMD 193 (281)
Q Consensus 170 ~~~~l~~L~~L~L~~n~l~~~~~~ 193 (281)
+.+++|+.|+++.|.+++..+.
T Consensus 162 --~~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 162 --CTCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp --CCTTTTHHHHHHHHHCTTTBBC
T ss_pred --cCCCCHHHHHHHHHhCCceeec
Confidence 3456777788888877765443
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=7.1e-19 Score=147.76 Aligned_cols=153 Identities=24% Similarity=0.307 Sum_probs=137.0
Q ss_pred HhccCCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEE
Q 023495 7 TARLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTL 86 (281)
Q Consensus 7 ~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 86 (281)
+..+++|++|++++|+++.++. +..+++|++|++++|.++.++. +..+++|++|++++|.++.++ .+. .+++|+.|
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~~-~l~-~l~~L~~L 139 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDIN-GLV-HLPQLESL 139 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCCG-GGG-GCTTCCEE
T ss_pred HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCCh-hhc-CCCCCCEE
Confidence 5789999999999999999876 9999999999999999998754 889999999999999999874 343 89999999
Q ss_pred EccCCcCcccCccccCCCCCcEEEccCCcCCCChhhhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCCCC
Q 023495 87 SINCNKIVILPQSLTHLTSLRVLDARLNCLKSLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKITT 166 (281)
Q Consensus 87 ~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 166 (281)
++++|.+..+ ..+..+++|+.|++++|.++.++. +..+++|+.|++++| .+..++ .+..+++|+.|++++|.+..
T Consensus 140 ~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N--~i~~l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 140 YLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKN--HISDLR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp ECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSS--CCCBCG-GGTTCTTCSEEEEEEEEEEC
T ss_pred EccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCC--cCCCCh-hhccCCCCCEEECcCCcccC
Confidence 9999999987 578899999999999999998876 899999999999999 555565 48899999999999999886
Q ss_pred CC
Q 023495 167 LP 168 (281)
Q Consensus 167 ~~ 168 (281)
.|
T Consensus 215 ~~ 216 (291)
T 1h6t_A 215 KP 216 (291)
T ss_dssp CC
T ss_pred Cc
Confidence 55
No 93
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=3.8e-19 Score=141.99 Aligned_cols=153 Identities=28% Similarity=0.348 Sum_probs=124.3
Q ss_pred CcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEccCCcCcccCcc-ccCCCCCcEEEccCC
Q 023495 36 LKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINCNKIVILPQS-LTHLTSLRVLDARLN 114 (281)
Q Consensus 36 L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~n 114 (281)
-+.++.+++.++.+|..+ .++|++|++++|.++.++...+..+++|++|++++|.+..++.. +..+++|++|++++|
T Consensus 9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 357788888888887654 45899999999999988887766889999999999998877654 678899999999999
Q ss_pred cCCCChhh-hhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCCCCCCh-hhhcCCCCCEEEccCCCCCCCC
Q 023495 115 CLKSLPED-LENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKITTLPD-SIGCLRKLQKLSLEGNPLVSPP 191 (281)
Q Consensus 115 ~l~~l~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~l~~L~~L~L~~n~l~~~~ 191 (281)
.++.++.. +..+++|+.|++++| ...+..+..+..+++|+.|++++|.++.++. .+..+++|+.|++++|++....
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 164 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 164 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT
T ss_pred cCCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC
Confidence 99877664 688999999999998 3333334457888999999999999987765 4788999999999999887644
No 94
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=9.6e-19 Score=141.00 Aligned_cols=150 Identities=24% Similarity=0.362 Sum_probs=98.6
Q ss_pred EEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEccCCcCccc-CccccCCCCCcEEEccCCcC
Q 023495 38 VLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINCNKIVIL-PQSLTHLTSLRVLDARLNCL 116 (281)
Q Consensus 38 ~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~l 116 (281)
.++.+++.++.+|..+. .+|++|++++|.++.+++..+..+++|+.|++++|.+..+ |..+..+++|++|++++|.+
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 44555555555544332 3455555555555555554444555666666666665544 45566667777777777777
Q ss_pred CCChhh-hhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCCCCCC-hhhhcCCCCCEEEccCCCCCCC
Q 023495 117 KSLPED-LENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKITTLP-DSIGCLRKLQKLSLEGNPLVSP 190 (281)
Q Consensus 117 ~~l~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~l~~L~~L~L~~n~l~~~ 190 (281)
+.+|.. +..+++|+.|++++| ...+..+..+..+++|+.|++++|.++.++ ..+..+++|+.|++++|++...
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 766654 566777777777777 334444566778888999999999998776 4688899999999999998653
No 95
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=1.3e-18 Score=140.22 Aligned_cols=150 Identities=25% Similarity=0.275 Sum_probs=94.4
Q ss_pred EEEccCCCCCCcchhhhcCccCceeeccCCcCcccC-hhHhhcCCCCcEEEccCCcCcccCc-cccCCCCCcEEEccCCc
Q 023495 38 VLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLP-DTIGFELINLKTLSINCNKIVILPQ-SLTHLTSLRVLDARLNC 115 (281)
Q Consensus 38 ~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~ 115 (281)
.+++++|.++.+|..+. ..+++|++++|.++.++ ...+..+++|++|++++|.+..++. .+..+++|++|++++|.
T Consensus 15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 44444444444443321 22344555555544442 2223345555555555555554433 45666666677777776
Q ss_pred CCCChh-hhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCCCCC-ChhhhcCCCCCEEEccCCCCCCC
Q 023495 116 LKSLPE-DLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKITTL-PDSIGCLRKLQKLSLEGNPLVSP 190 (281)
Q Consensus 116 l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~l~~L~~L~L~~n~l~~~ 190 (281)
++.++. .+..+++|++|++++| ...+..|..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|++...
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred cCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 665544 3666777777777777 33444466677888899999999999877 67889999999999999998764
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.79 E-value=1.8e-19 Score=157.30 Aligned_cols=189 Identities=19% Similarity=0.231 Sum_probs=141.0
Q ss_pred CChhHHhccCCCcEEEccCCCCCc-----cchhccCCCCCcEEEccCCCCCC----cchhh-------hcCccCceeecc
Q 023495 2 IPESLTARLLNVVVLDVHSNQLKC-----LPNSIGCLSKLKVLDVSGNLLES----LPKTI-------ENCRSLEELNAN 65 (281)
Q Consensus 2 ip~~~~~~~~~L~~L~l~~~~l~~-----l~~~~~~l~~L~~L~L~~n~l~~----l~~~~-------~~l~~L~~L~L~ 65 (281)
++.. +..+++|++|++++|+++. ++..+..+++|++|++++|.+.. +|..+ ..+++|++|+++
T Consensus 24 l~~~-l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 24 VFAV-LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TSHH-HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHH-HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 3444 4789999999999999884 33457789999999999986653 34444 688999999999
Q ss_pred CCcCcc-----cChhHhhcCCCCcEEEccCCcCc-----ccCccccCC---------CCCcEEEccCCcCC--CCh---h
Q 023495 66 FNKLRQ-----LPDTIGFELINLKTLSINCNKIV-----ILPQSLTHL---------TSLRVLDARLNCLK--SLP---E 121 (281)
Q Consensus 66 ~n~l~~-----~~~~~~~~l~~L~~L~l~~~~l~-----~l~~~~~~l---------~~L~~L~l~~n~l~--~l~---~ 121 (281)
+|.+.. ++..+. .+++|++|++++|.+. .++..+..+ ++|++|++++|.++ .++ .
T Consensus 103 ~n~l~~~~~~~l~~~l~-~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLS-KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp SCCCCTTTHHHHHHHHH-HCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCcCCHHHHHHHHHHHH-hCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 999986 444554 7899999999999886 233334444 78899999998886 444 3
Q ss_pred hhhCCCCCCeeeccccccccc------CCCccccCCCcccEEEcCCCCC-----CCCChhhhcCCCCCEEEccCCCCCCC
Q 023495 122 DLENLINLEVLNISQNFQYLE------TLPYSIGLLMSLVELDVSYNKI-----TTLPDSIGCLRKLQKLSLEGNPLVSP 190 (281)
Q Consensus 122 ~~~~l~~L~~L~l~~n~~~~~------~~~~~~~~~~~L~~L~l~~n~i-----~~~~~~~~~l~~L~~L~L~~n~l~~~ 190 (281)
.+..+++|++|++++| .+. ..+..+..+++|+.|+|++|.+ ..+|..+..+++|+.|+|++|.++..
T Consensus 182 ~l~~~~~L~~L~L~~n--~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~ 259 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQN--GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259 (386)
T ss_dssp HHHHCTTCCEEECCSS--CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred HHHhCCCcCEEECcCC--CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchh
Confidence 5677888888888888 232 2333667788888888888887 35667778888888888888887665
Q ss_pred CHHH
Q 023495 191 PMDV 194 (281)
Q Consensus 191 ~~~~ 194 (281)
....
T Consensus 260 ~~~~ 263 (386)
T 2ca6_A 260 GAAA 263 (386)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 4333
No 97
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.79 E-value=2.6e-18 Score=158.11 Aligned_cols=95 Identities=35% Similarity=0.360 Sum_probs=49.8
Q ss_pred CCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEccC
Q 023495 11 LNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINC 90 (281)
Q Consensus 11 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 90 (281)
++|++|++++|+++.+|. .+++|++|++++|.++.+|. .+++|++|++++|.++.+|. .+++|+.|++++
T Consensus 61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~ 130 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFG 130 (622)
T ss_dssp TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCS
T ss_pred CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCC
Confidence 456666666666666654 34566666666666665554 44556666666655555544 234444444444
Q ss_pred CcCcccCccccCCCCCcEEEccCCcCCC
Q 023495 91 NKIVILPQSLTHLTSLRVLDARLNCLKS 118 (281)
Q Consensus 91 ~~l~~l~~~~~~l~~L~~L~l~~n~l~~ 118 (281)
|.+..+|.. +++|++|++++|.++.
T Consensus 131 N~l~~lp~~---l~~L~~L~Ls~N~l~~ 155 (622)
T 3g06_A 131 NQLTSLPVL---PPGLQELSVSDNQLAS 155 (622)
T ss_dssp SCCSCCCCC---CTTCCEEECCSSCCSC
T ss_pred CCCCcCCCC---CCCCCEEECcCCcCCC
Confidence 444443332 1344444444444443
No 98
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=3e-19 Score=152.75 Aligned_cols=176 Identities=19% Similarity=0.185 Sum_probs=86.3
Q ss_pred ccCCCcEEEccCCCCCc--cchhccCCCCCcEEEccCCCCC-CcchhhhcCccCceeeccCC-cCcc--cChhHhhcCCC
Q 023495 9 RLLNVVVLDVHSNQLKC--LPNSIGCLSKLKVLDVSGNLLE-SLPKTIENCRSLEELNANFN-KLRQ--LPDTIGFELIN 82 (281)
Q Consensus 9 ~~~~L~~L~l~~~~l~~--l~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~l~~L~~L~L~~n-~l~~--~~~~~~~~l~~ 82 (281)
++++|++|++++|.++. ++..+..+++|++|++++|.++ ..+..+..+++|++|++++| .++. ++..+ ..+++
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~-~~~~~ 169 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL-SSCSR 169 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH-HHCTT
T ss_pred cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHH-hcCCC
Confidence 34555555555555442 3444555555555555555554 23444555555555555555 3442 22222 24555
Q ss_pred CcEEEccCC-cCcc--cCccccCCC-CCcEEEccCCc--CC--CChhhhhCCCCCCeeecccccccccCCCccccCCCcc
Q 023495 83 LKTLSINCN-KIVI--LPQSLTHLT-SLRVLDARLNC--LK--SLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSL 154 (281)
Q Consensus 83 L~~L~l~~~-~l~~--l~~~~~~l~-~L~~L~l~~n~--l~--~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L 154 (281)
|++|++++| .+.. ++..+..++ +|++|++++|. ++ .++..+..+++|+.|++++|.......+..+..+++|
T Consensus 170 L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L 249 (336)
T 2ast_B 170 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 249 (336)
T ss_dssp CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred CCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCC
Confidence 555555555 4442 344445555 55555555552 22 3444455555555555555521223334445555555
Q ss_pred cEEEcCCCC-CC-CCChhhhcCCCCCEEEccCC
Q 023495 155 VELDVSYNK-IT-TLPDSIGCLRKLQKLSLEGN 185 (281)
Q Consensus 155 ~~L~l~~n~-i~-~~~~~~~~l~~L~~L~L~~n 185 (281)
+.|++++|. +. .....+..+++|+.|++++|
T Consensus 250 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 250 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 555555553 21 11123455555555555555
No 99
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=2e-18 Score=139.12 Aligned_cols=151 Identities=19% Similarity=0.245 Sum_probs=132.6
Q ss_pred CcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcc--hhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEccC
Q 023495 13 VVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLP--KTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINC 90 (281)
Q Consensus 13 L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 90 (281)
-+.++++++.++.+|..+. ..+++|++++|.++.++ ..|..+++|++|++++|.++.+++..+..+++|++|++++
T Consensus 13 ~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 4689999999999987664 45799999999999873 3488999999999999999999987777999999999999
Q ss_pred CcCcccCc-cccCCCCCcEEEccCCcCCCC-hhhhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCCCC
Q 023495 91 NKIVILPQ-SLTHLTSLRVLDARLNCLKSL-PEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKITT 166 (281)
Q Consensus 91 ~~l~~l~~-~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 166 (281)
|.+..++. .+..+++|++|++++|.++.+ |..+..+++|+.|++++| ...+..|..+..+++|+.|++++|.+..
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 99997765 588999999999999999977 567999999999999999 4555557889999999999999998873
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=2e-18 Score=139.08 Aligned_cols=151 Identities=20% Similarity=0.314 Sum_probs=130.8
Q ss_pred CcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcc-hhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEccCC
Q 023495 13 VVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLP-KTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINCN 91 (281)
Q Consensus 13 L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~ 91 (281)
-+.+++++++++.+|..+. +.++.|++++|.++.++ ..|..+++|++|++++|.++.+.+..+..+++|++|++++|
T Consensus 13 ~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TTEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CCEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 3689999999999987664 78999999999999885 47889999999999999999887776669999999999999
Q ss_pred cCcccCcc-ccCCCCCcEEEccCCcCCCC-hhhhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCCCC
Q 023495 92 KIVILPQS-LTHLTSLRVLDARLNCLKSL-PEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKITT 166 (281)
Q Consensus 92 ~l~~l~~~-~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 166 (281)
.+..+|.. +..+++|++|++++|.++.+ +..+..+++|+.|++++| ...+..+..+..+++|+.|++++|.+..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 99988765 68899999999999999977 456899999999999999 3444444568889999999999998763
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=3.3e-18 Score=138.68 Aligned_cols=150 Identities=27% Similarity=0.364 Sum_probs=134.5
Q ss_pred CcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCc-chhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEccCC
Q 023495 13 VVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESL-PKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINCN 91 (281)
Q Consensus 13 L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~ 91 (281)
-+.++.++++++.+|..+. ++|++|++++|.++.+ |..+..+++|++|++++|.++.++...+..+++|++|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 5689999999999987664 8899999999999987 677899999999999999999999888778999999999999
Q ss_pred cCcccCcc-ccCCCCCcEEEccCCcCCCChhhhhCCCCCCeeecccccccccCCC-ccccCCCcccEEEcCCCCCCC
Q 023495 92 KIVILPQS-LTHLTSLRVLDARLNCLKSLPEDLENLINLEVLNISQNFQYLETLP-YSIGLLMSLVELDVSYNKITT 166 (281)
Q Consensus 92 ~l~~l~~~-~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~L~l~~n~i~~ 166 (281)
.+..++.. +..+++|+.|++++|.++.+|..+..+++|+.|++++| .+..++ ..+..+++|+.|++++|.+..
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN--QLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS--CCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC--cCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 99987654 78999999999999999999999999999999999999 444454 568889999999999998874
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.78 E-value=5.5e-19 Score=152.97 Aligned_cols=191 Identities=20% Similarity=0.212 Sum_probs=143.1
Q ss_pred hHHhccCCCcEEEccCCCCCccc-----hhccCCC-CCcEEEccCCCCCCc-chhhhcC-----ccCceeeccCCcCccc
Q 023495 5 SLTARLLNVVVLDVHSNQLKCLP-----NSIGCLS-KLKVLDVSGNLLESL-PKTIENC-----RSLEELNANFNKLRQL 72 (281)
Q Consensus 5 ~~~~~~~~L~~L~l~~~~l~~l~-----~~~~~l~-~L~~L~L~~n~l~~l-~~~~~~l-----~~L~~L~L~~n~l~~~ 72 (281)
.++...++|++|++++|.++.++ ..+..++ +|++|++++|.++.. +..+..+ ++|++|++++|.++..
T Consensus 16 ~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 95 (362)
T 3goz_A 16 EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYK 95 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChH
Confidence 34455666999999999998775 5678888 899999999999865 5555554 8999999999999866
Q ss_pred ChhHh----hcC-CCCcEEEccCCcCcccCc-----cccC-CCCCcEEEccCCcCC-----CChhhhhCCC-CCCeeecc
Q 023495 73 PDTIG----FEL-INLKTLSINCNKIVILPQ-----SLTH-LTSLRVLDARLNCLK-----SLPEDLENLI-NLEVLNIS 135 (281)
Q Consensus 73 ~~~~~----~~l-~~L~~L~l~~~~l~~l~~-----~~~~-l~~L~~L~l~~n~l~-----~l~~~~~~l~-~L~~L~l~ 135 (281)
..... ..+ ++|++|++++|.+...+. .+.. .++|++|++++|.++ .++..+..++ +|++|+++
T Consensus 96 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls 175 (362)
T 3goz_A 96 SSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLR 175 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred HHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeec
Confidence 65422 234 799999999999885432 2344 368999999999988 3344556665 99999999
Q ss_pred cccccccCCCcc----ccCC-CcccEEEcCCCCCCC-----CChhhhc-CCCCCEEEccCCCCCCCCHHHHH
Q 023495 136 QNFQYLETLPYS----IGLL-MSLVELDVSYNKITT-----LPDSIGC-LRKLQKLSLEGNPLVSPPMDVVE 196 (281)
Q Consensus 136 ~n~~~~~~~~~~----~~~~-~~L~~L~l~~n~i~~-----~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~ 196 (281)
+| ......+.. +..+ ++|+.|++++|.+.. ++..+.. .++|+.|+|++|.+...+...+.
T Consensus 176 ~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 246 (362)
T 3goz_A 176 GN-NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK 246 (362)
T ss_dssp TS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHH
T ss_pred CC-CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHH
Confidence 99 333333333 3444 589999999999886 5566666 45899999999999988776554
No 103
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=8.8e-19 Score=151.00 Aligned_cols=190 Identities=21% Similarity=0.209 Sum_probs=135.3
Q ss_pred CCChhHHhccCCCcEEEccCCCCCccch-hccCCCCCcEEEccCCCCCC-cc-hhhhcCccCce-eeccCCcCcccChhH
Q 023495 1 MIPESLTARLLNVVVLDVHSNQLKCLPN-SIGCLSKLKVLDVSGNLLES-LP-KTIENCRSLEE-LNANFNKLRQLPDTI 76 (281)
Q Consensus 1 ~ip~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~L~~n~l~~-l~-~~~~~l~~L~~-L~L~~n~l~~~~~~~ 76 (281)
+||.++ ..++++|+|++|+|+.+|. +|.++++|++|+|++|.+.+ ++ ..|.+++++++ +.++.|++..+++..
T Consensus 23 ~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~ 99 (350)
T 4ay9_X 23 EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA 99 (350)
T ss_dssp SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTS
T ss_pred ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchh
Confidence 367765 3578999999999999975 68899999999999998754 54 45677888765 566778899888887
Q ss_pred hhcCCCCcEEEccCCcCcccCc-cccCCCCCcEEEccC-CcCCCChhh-hhCC-CCCCeeecccccccccCCCccccCCC
Q 023495 77 GFELINLKTLSINCNKIVILPQ-SLTHLTSLRVLDARL-NCLKSLPED-LENL-INLEVLNISQNFQYLETLPYSIGLLM 152 (281)
Q Consensus 77 ~~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~-n~l~~l~~~-~~~l-~~L~~L~l~~n~~~~~~~~~~~~~~~ 152 (281)
+..+++|++|++++|.+..++. .+....++..+++.+ +.+..++.. +..+ ..++.|++++| .+..++.......
T Consensus 100 f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N--~i~~i~~~~f~~~ 177 (350)
T 4ay9_X 100 FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN--GIQEIHNSAFNGT 177 (350)
T ss_dssp BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS--CCCEECTTSSTTE
T ss_pred hhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc--cccCCChhhcccc
Confidence 7788999999999988886654 344555666777654 455555442 4443 35677777777 4555655555556
Q ss_pred cccEEEcCC-CCCCCCC-hhhhcCCCCCEEEccCCCCCCCCHHHH
Q 023495 153 SLVELDVSY-NKITTLP-DSIGCLRKLQKLSLEGNPLVSPPMDVV 195 (281)
Q Consensus 153 ~L~~L~l~~-n~i~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~ 195 (281)
+|+.+++.+ |.++.+| +.|..+++|+.|++++|+|+.++...+
T Consensus 178 ~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~ 222 (350)
T 4ay9_X 178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL 222 (350)
T ss_dssp EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC
T ss_pred chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh
Confidence 777777763 5666776 356777777777777777777766543
No 104
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.78 E-value=4e-21 Score=175.31 Aligned_cols=181 Identities=22% Similarity=0.272 Sum_probs=152.5
Q ss_pred hccCCCcEEEccCCCCCccchhccCCCCCcEEEccCCC-------------CC-CcchhhhcCccCceee-ccCCcCccc
Q 023495 8 ARLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNL-------------LE-SLPKTIENCRSLEELN-ANFNKLRQL 72 (281)
Q Consensus 8 ~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~-------------l~-~l~~~~~~l~~L~~L~-L~~n~l~~~ 72 (281)
..+++|+.|++++|+++.+|..++++++|+.|++++|. +. ..|..+..+++|+.|+ ++.|.+..+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 46788999999999999999999999999999987763 22 3467778888999998 666654433
Q ss_pred Chh------Hh-hcCCCCcEEEccCCcCcccCccccCCCCCcEEEccCCcCCCChhhhhCCCCCCeeecccccccccCCC
Q 023495 73 PDT------IG-FELINLKTLSINCNKIVILPQSLTHLTSLRVLDARLNCLKSLPEDLENLINLEVLNISQNFQYLETLP 145 (281)
Q Consensus 73 ~~~------~~-~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~ 145 (281)
+.. +. .....|+.|++++|.++.+|. +..+++|+.|++++|.++.+|..++.+++|+.|++++| .+..+|
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N--~l~~lp 502 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN--ALENVD 502 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS--CCCCCG
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC--CCCCCc
Confidence 321 00 012369999999999999987 99999999999999999999999999999999999999 455577
Q ss_pred ccccCCCcccEEEcCCCCCCCC--ChhhhcCCCCCEEEccCCCCCCCCH
Q 023495 146 YSIGLLMSLVELDVSYNKITTL--PDSIGCLRKLQKLSLEGNPLVSPPM 192 (281)
Q Consensus 146 ~~~~~~~~L~~L~l~~n~i~~~--~~~~~~l~~L~~L~L~~n~l~~~~~ 192 (281)
.++.+++|+.|+|++|.++.+ |..+..+++|+.|+|++|++++.++
T Consensus 503 -~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 503 -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp -GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred -ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 899999999999999999977 8999999999999999999988765
No 105
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.77 E-value=4.3e-19 Score=151.81 Aligned_cols=182 Identities=19% Similarity=0.157 Sum_probs=150.5
Q ss_pred hHHhcc--CCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCC--cchhhhcCccCceeeccCCcCcccChhHhhcC
Q 023495 5 SLTARL--LNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLES--LPKTIENCRSLEELNANFNKLRQLPDTIGFEL 80 (281)
Q Consensus 5 ~~~~~~--~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 80 (281)
..+..+ ++++.|++++|.+...+..+..+++|++|++++|.++. ++..+..+++|++|++++|.++.........+
T Consensus 62 ~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~ 141 (336)
T 2ast_B 62 DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKN 141 (336)
T ss_dssp HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTC
T ss_pred HHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcC
Confidence 344556 88999999999998776667789999999999999873 67788999999999999998874333333479
Q ss_pred CCCcEEEccCC-cCc--ccCccccCCCCCcEEEccCC-cCCC--ChhhhhCCC-CCCeeecccccc-cc-cCCCccccCC
Q 023495 81 INLKTLSINCN-KIV--ILPQSLTHLTSLRVLDARLN-CLKS--LPEDLENLI-NLEVLNISQNFQ-YL-ETLPYSIGLL 151 (281)
Q Consensus 81 ~~L~~L~l~~~-~l~--~l~~~~~~l~~L~~L~l~~n-~l~~--l~~~~~~l~-~L~~L~l~~n~~-~~-~~~~~~~~~~ 151 (281)
++|++|++++| .+. .++..+..+++|++|++++| .++. ++..+..++ +|++|++++|.. .. ..++..+..+
T Consensus 142 ~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~ 221 (336)
T 2ast_B 142 SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC 221 (336)
T ss_dssp TTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHC
T ss_pred CCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhC
Confidence 99999999999 576 36667888999999999999 8883 677789999 999999999831 11 4456667889
Q ss_pred CcccEEEcCCCC-CC-CCChhhhcCCCCCEEEccCCC
Q 023495 152 MSLVELDVSYNK-IT-TLPDSIGCLRKLQKLSLEGNP 186 (281)
Q Consensus 152 ~~L~~L~l~~n~-i~-~~~~~~~~l~~L~~L~L~~n~ 186 (281)
++|+.|++++|. ++ ..+..+..+++|+.|++++|.
T Consensus 222 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 222 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 999999999998 66 556788999999999999996
No 106
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.77 E-value=8.1e-18 Score=149.83 Aligned_cols=78 Identities=35% Similarity=0.468 Sum_probs=32.9
Q ss_pred CCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEccCCcCcccCccccCCCCCcEEEccCC
Q 023495 35 KLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINCNKIVILPQSLTHLTSLRVLDARLN 114 (281)
Q Consensus 35 ~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n 114 (281)
+|++|++++|.++.+| .+..+++|++|++++|.++.+|.. ..+|++|++++|.+..+| .+..+++|+.|++++|
T Consensus 132 ~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 132 LLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNN 205 (454)
T ss_dssp TCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS
T ss_pred CCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCcCc-cccCCCCCCEEECCCC
Confidence 3444444444444443 244444444444444444443321 124444444444444433 2344444444444444
Q ss_pred cCCC
Q 023495 115 CLKS 118 (281)
Q Consensus 115 ~l~~ 118 (281)
.++.
T Consensus 206 ~l~~ 209 (454)
T 1jl5_A 206 SLKK 209 (454)
T ss_dssp CCSS
T ss_pred cCCc
Confidence 4443
No 107
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.77 E-value=5.4e-18 Score=150.98 Aligned_cols=161 Identities=35% Similarity=0.400 Sum_probs=101.2
Q ss_pred CCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEccC
Q 023495 11 LNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINC 90 (281)
Q Consensus 11 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 90 (281)
++|++|++++|+++.+| .++++++|++|++++|.++.+|..+ .+|++|++++|.++.+| .+ ..+++|++|++++
T Consensus 131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~-~~l~~L~~L~l~~ 204 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-EL-QNLPFLTAIYADN 204 (454)
T ss_dssp TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CC-TTCTTCCEEECCS
T ss_pred CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cc-cCCCCCCEEECCC
Confidence 46777888877777776 4777888888888888777766432 47777777777777766 33 3677777777777
Q ss_pred CcCcccCccccCCCCCcEEEccCCcCCCChhhhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCCCCCChh
Q 023495 91 NKIVILPQSLTHLTSLRVLDARLNCLKSLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKITTLPDS 170 (281)
Q Consensus 91 ~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~ 170 (281)
|.+..+|... ++|++|++++|.++.+| .++.+++|+.|++++| ....+|.. +++|+.|++++|.++.+|..
T Consensus 205 N~l~~l~~~~---~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N--~l~~l~~~---~~~L~~L~l~~N~l~~l~~~ 275 (454)
T 1jl5_A 205 NSLKKLPDLP---LSLESIVAGNNILEELP-ELQNLPFLTTIYADNN--LLKTLPDL---PPSLEALNVRDNYLTDLPEL 275 (454)
T ss_dssp SCCSSCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS--CCSSCCSC---CTTCCEEECCSSCCSCCCCC
T ss_pred CcCCcCCCCc---CcccEEECcCCcCCccc-ccCCCCCCCEEECCCC--cCCccccc---ccccCEEECCCCcccccCcc
Confidence 7776655432 46677777777766666 3666677777777666 23334432 24555555555555554432
Q ss_pred hhcCCCCCEEEccCCCCCC
Q 023495 171 IGCLRKLQKLSLEGNPLVS 189 (281)
Q Consensus 171 ~~~l~~L~~L~L~~n~l~~ 189 (281)
+++|+.|++++|.+++
T Consensus 276 ---~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 276 ---PQSLTFLDVSENIFSG 291 (454)
T ss_dssp ---CTTCCEEECCSSCCSE
T ss_pred ---cCcCCEEECcCCccCc
Confidence 1344444444444443
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=1e-17 Score=145.00 Aligned_cols=159 Identities=26% Similarity=0.344 Sum_probs=137.7
Q ss_pred CcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhh-cCCCCcEEEccCCcCcccC-ccccCCCCCcEEEccC
Q 023495 36 LKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGF-ELINLKTLSINCNKIVILP-QSLTHLTSLRVLDARL 113 (281)
Q Consensus 36 L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~ 113 (281)
-+.++++++.++.+|..+. ..+++|+|++|.++.++...+. .+++|++|++++|.+..++ ..+..+++|++|++++
T Consensus 20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 4689999999999987653 4689999999999999988776 8999999999999999776 4689999999999999
Q ss_pred CcCCCChh-hhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCCCCCChhh----hcCCCCCEEEccCCCCC
Q 023495 114 NCLKSLPE-DLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKITTLPDSI----GCLRKLQKLSLEGNPLV 188 (281)
Q Consensus 114 n~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~----~~l~~L~~L~L~~n~l~ 188 (281)
|.++.++. .+..+++|+.|++++| ......+..|..+++|+.|+|++|.++.+|..+ ..+++|+.|+|++|.|+
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 99998765 5899999999999999 444445678999999999999999999998654 67999999999999999
Q ss_pred CCCHHHHHh
Q 023495 189 SPPMDVVEQ 197 (281)
Q Consensus 189 ~~~~~~~~~ 197 (281)
.++...+..
T Consensus 177 ~l~~~~~~~ 185 (361)
T 2xot_A 177 KLPLTDLQK 185 (361)
T ss_dssp CCCHHHHHH
T ss_pred ccCHHHhhh
Confidence 999876653
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=1.3e-17 Score=153.08 Aligned_cols=153 Identities=24% Similarity=0.311 Sum_probs=136.4
Q ss_pred HhccCCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEE
Q 023495 7 TARLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTL 86 (281)
Q Consensus 7 ~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 86 (281)
+..+++|+.|+|++|++..++. +..+++|+.|+|++|.+..++ .+..+++|++|+|++|.+..++. +. .+++|+.|
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~~-l~-~l~~L~~L 136 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDING-LV-HLPQLESL 136 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCGG-GG-GCTTCSEE
T ss_pred HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCcc-cc-CCCccCEE
Confidence 5789999999999999999876 889999999999999999876 68899999999999999998754 33 89999999
Q ss_pred EccCCcCcccCccccCCCCCcEEEccCCcCCCChhhhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCCCC
Q 023495 87 SINCNKIVILPQSLTHLTSLRVLDARLNCLKSLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKITT 166 (281)
Q Consensus 87 ~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 166 (281)
++++|.+..+ ..+..+++|+.|++++|.+..++. +..+++|+.|+|++| .+..++ .+..+++|+.|+|++|.+..
T Consensus 137 ~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N--~i~~l~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 137 YLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKN--HISDLR-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp ECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSS--CCCBCG-GGTTCTTCSEEECCSEEEEC
T ss_pred ECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCC--CCCCCh-HHccCCCCCEEEccCCcCcC
Confidence 9999999977 578899999999999999998866 899999999999999 445554 68899999999999998875
Q ss_pred CC
Q 023495 167 LP 168 (281)
Q Consensus 167 ~~ 168 (281)
.|
T Consensus 212 ~p 213 (605)
T 1m9s_A 212 KP 213 (605)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 110
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.74 E-value=9.7e-18 Score=129.25 Aligned_cols=126 Identities=20% Similarity=0.175 Sum_probs=66.3
Q ss_pred CCCcEEEccCCCCC--ccchhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEc
Q 023495 11 LNVVVLDVHSNQLK--CLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSI 88 (281)
Q Consensus 11 ~~L~~L~l~~~~l~--~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 88 (281)
++|++|++++|+++ .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.++...+..+..+++|++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 45566666666555 5555555555566666666555554 44555555555555555555422233324555555555
Q ss_pred cCCcCcccC--ccccCCCCCcEEEccCCcCCCChh----hhhCCCCCCeeecccc
Q 023495 89 NCNKIVILP--QSLTHLTSLRVLDARLNCLKSLPE----DLENLINLEVLNISQN 137 (281)
Q Consensus 89 ~~~~l~~l~--~~~~~l~~L~~L~l~~n~l~~l~~----~~~~l~~L~~L~l~~n 137 (281)
++|.+..++ ..+..+++|+.|++++|.++.++. .+..+++|+.|++++|
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 555555443 344555555555555555554443 3444445555554444
No 111
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.74 E-value=5.8e-18 Score=146.52 Aligned_cols=189 Identities=19% Similarity=0.219 Sum_probs=141.4
Q ss_pred hHHhccC-CCcEEEccCCCCCcc-chhccCC-----CCCcEEEccCCCCCCc-chh----hhcC-ccCceeeccCCcCcc
Q 023495 5 SLTARLL-NVVVLDVHSNQLKCL-PNSIGCL-----SKLKVLDVSGNLLESL-PKT----IENC-RSLEELNANFNKLRQ 71 (281)
Q Consensus 5 ~~~~~~~-~L~~L~l~~~~l~~l-~~~~~~l-----~~L~~L~L~~n~l~~l-~~~----~~~l-~~L~~L~L~~n~l~~ 71 (281)
..+.+++ +|++|++++|.++.. +..+..+ ++|++|++++|.++.. +.. +..+ ++|++|++++|.++.
T Consensus 44 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 123 (362)
T 3goz_A 44 QAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS 123 (362)
T ss_dssp HHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred HHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc
Confidence 4567788 899999999999865 4445443 8999999999999855 333 4455 899999999999987
Q ss_pred cChhHhh----c-CCCCcEEEccCCcCc-----ccCccccCCC-CCcEEEccCCcCCCCh-h----hhhCC-CCCCeeec
Q 023495 72 LPDTIGF----E-LINLKTLSINCNKIV-----ILPQSLTHLT-SLRVLDARLNCLKSLP-E----DLENL-INLEVLNI 134 (281)
Q Consensus 72 ~~~~~~~----~-l~~L~~L~l~~~~l~-----~l~~~~~~l~-~L~~L~l~~n~l~~l~-~----~~~~l-~~L~~L~l 134 (281)
.+..... . ..+|++|++++|.+. .++..+..++ +|++|++++|.++... . .+..+ ++|+.|++
T Consensus 124 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L 203 (362)
T 3goz_A 124 KSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDL 203 (362)
T ss_dssp SCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred HHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEEC
Confidence 7664332 2 369999999999988 3445556665 8999999999987433 2 34555 59999999
Q ss_pred ccccccccC-----CCccccC-CCcccEEEcCCCCCCCCC-----hhhhcCCCCCEEEccCCCCCCCCHHHH
Q 023495 135 SQNFQYLET-----LPYSIGL-LMSLVELDVSYNKITTLP-----DSIGCLRKLQKLSLEGNPLVSPPMDVV 195 (281)
Q Consensus 135 ~~n~~~~~~-----~~~~~~~-~~~L~~L~l~~n~i~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~ 195 (281)
++| .++. ++..+.. .++|+.|++++|.+...+ ..+..+++|+.|++++|.+..+....+
T Consensus 204 s~N--~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~ 273 (362)
T 3goz_A 204 SAN--LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQC 273 (362)
T ss_dssp TTS--CGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHH
T ss_pred CCC--CCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHH
Confidence 999 3443 4445555 458999999999998654 334677889999999998777766544
No 112
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.74 E-value=8.4e-18 Score=144.87 Aligned_cols=187 Identities=24% Similarity=0.276 Sum_probs=149.3
Q ss_pred CChhHHhccCCCcEEEccCCCCC-ccc-hhccCCCCCcE-EEccCCCCCCc-chhhhcCccCceeeccCCcCcccChhHh
Q 023495 2 IPESLTARLLNVVVLDVHSNQLK-CLP-NSIGCLSKLKV-LDVSGNLLESL-PKTIENCRSLEELNANFNKLRQLPDTIG 77 (281)
Q Consensus 2 ip~~~~~~~~~L~~L~l~~~~l~-~l~-~~~~~l~~L~~-L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 77 (281)
||...|.++++|++|+|++|++. .++ ..|.++++++. +.+.+|+++.+ |..|..+++|++|++++|.+..+++..+
T Consensus 45 i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~ 124 (350)
T 4ay9_X 45 IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK 124 (350)
T ss_dssp ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTT
T ss_pred cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhh
Confidence 68888899999999999999985 455 46888988775 66678999988 5678899999999999999998888766
Q ss_pred hcCCCCcEEEccC-CcCcccCc-cccCCC-CCcEEEccCCcCCCChhhhhCCCCCCeeecccccccccCCCc-cccCCCc
Q 023495 78 FELINLKTLSINC-NKIVILPQ-SLTHLT-SLRVLDARLNCLKSLPEDLENLINLEVLNISQNFQYLETLPY-SIGLLMS 153 (281)
Q Consensus 78 ~~l~~L~~L~l~~-~~l~~l~~-~~~~l~-~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~~~ 153 (281)
....++..+++.+ +.+..++. .+..+. .++.|++++|.++.++.......+|+.+++.++ ..++.+|. .|..+++
T Consensus 125 ~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~-n~l~~i~~~~f~~l~~ 203 (350)
T 4ay9_X 125 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDN-NNLEELPNDVFHGASG 203 (350)
T ss_dssp CCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTC-TTCCCCCTTTTTTEEC
T ss_pred cccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccC-CcccCCCHHHhccCcc
Confidence 5677888888855 56777765 455554 689999999999999888777789999999875 36667765 5789999
Q ss_pred ccEEEcCCCCCCCCChhhhcCCCCCEEEccCC-CCCCCC
Q 023495 154 LVELDVSYNKITTLPDSIGCLRKLQKLSLEGN-PLVSPP 191 (281)
Q Consensus 154 L~~L~l~~n~i~~~~~~~~~l~~L~~L~L~~n-~l~~~~ 191 (281)
|+.|++++|+++.+|.. .+.+|+.|.+.++ .++.+|
T Consensus 204 L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 204 PVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp CSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCC
T ss_pred cchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCC
Confidence 99999999999999853 3556666665544 455555
No 113
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.72 E-value=1.3e-17 Score=129.59 Aligned_cols=129 Identities=21% Similarity=0.251 Sum_probs=89.1
Q ss_pred hccCCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEE
Q 023495 8 ARLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLS 87 (281)
Q Consensus 8 ~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 87 (281)
.++.+|++|++++|+++.++......++|++|++++|.++.+ ..+..+++|++|++++|.++.+++.++..+++|++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 456677777777777777654232233777777777777766 5666777777777777777777766644677777777
Q ss_pred ccCCcCcccCc--cccCCCCCcEEEccCCcCCCChhh----hhCCCCCCeeecccc
Q 023495 88 INCNKIVILPQ--SLTHLTSLRVLDARLNCLKSLPED----LENLINLEVLNISQN 137 (281)
Q Consensus 88 l~~~~l~~l~~--~~~~l~~L~~L~l~~n~l~~l~~~----~~~l~~L~~L~l~~n 137 (281)
+++|.+..+|. .+..+++|+.|++++|.+..+|.. +..+++|+.|++++|
T Consensus 95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 95 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 77777776665 566677777777777777666553 666677777776666
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=2.9e-19 Score=163.11 Aligned_cols=176 Identities=19% Similarity=0.244 Sum_probs=142.5
Q ss_pred CChhHHhccCCCcEEEccCCC-------------CC-ccchhccCCCCCcEEE-ccCCCCCCcch------hhhc--Ccc
Q 023495 2 IPESLTARLLNVVVLDVHSNQ-------------LK-CLPNSIGCLSKLKVLD-VSGNLLESLPK------TIEN--CRS 58 (281)
Q Consensus 2 ip~~~~~~~~~L~~L~l~~~~-------------l~-~l~~~~~~l~~L~~L~-L~~n~l~~l~~------~~~~--l~~ 58 (281)
||..+ ++|++|+.|++++|. .. .+|..++.+++|+.|+ ++.|.+..++. .+.. ...
T Consensus 364 Lp~~i-~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~ 442 (567)
T 1dce_A 364 LQSEL-ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYAD 442 (567)
T ss_dssp HHHHH-HHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHH-HHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccC
Confidence 56765 889999999987663 22 3456778888899888 66665443321 1211 136
Q ss_pred CceeeccCCcCcccChhHhhcCCCCcEEEccCCcCcccCccccCCCCCcEEEccCCcCCCChhhhhCCCCCCeeeccccc
Q 023495 59 LEELNANFNKLRQLPDTIGFELINLKTLSINCNKIVILPQSLTHLTSLRVLDARLNCLKSLPEDLENLINLEVLNISQNF 138 (281)
Q Consensus 59 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~ 138 (281)
|++|++++|.++.+|. + ..+++|+.|++++|.+..+|..+..+++|+.|++++|.++.+| .++.+++|+.|++++|
T Consensus 443 L~~L~Ls~n~l~~lp~-~-~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N- 518 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCH-L-EQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN- 518 (567)
T ss_dssp CSEEECTTSCCSSCCC-G-GGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS-
T ss_pred ceEEEecCCCCCCCcC-c-cccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC-
Confidence 9999999999999987 4 4899999999999999999999999999999999999999998 8999999999999999
Q ss_pred ccccCC-CccccCCCcccEEEcCCCCCCCCCh----hhhcCCCCCEEEc
Q 023495 139 QYLETL-PYSIGLLMSLVELDVSYNKITTLPD----SIGCLRKLQKLSL 182 (281)
Q Consensus 139 ~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~----~~~~l~~L~~L~L 182 (281)
...+.. |..+..+++|+.|++++|.++.+|+ .+..+++|+.|++
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 344443 8899999999999999999997654 3455899999874
No 115
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.71 E-value=4.7e-17 Score=152.71 Aligned_cols=121 Identities=30% Similarity=0.389 Sum_probs=82.9
Q ss_pred hhHhhcCCCCcEEEccCCcCcccCccccCCCCCcEEEccCCcCCCChhhhhCCCCCCeeecccccccccCCCccccCCCc
Q 023495 74 DTIGFELINLKTLSINCNKIVILPQSLTHLTSLRVLDARLNCLKSLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMS 153 (281)
Q Consensus 74 ~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 153 (281)
+..+..+++|+.|++++|.+..+|..+..+++|++|++++|.++.+|..++++++|+.|+|++| .+..+|..+..+++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N--~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN--RLTSLPAELGSCFQ 294 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS--CCSSCCSSGGGGTT
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC--cCCccChhhcCCCC
Confidence 3333466677777777777766666666677777777777777777766777777777777777 34466777777777
Q ss_pred ccEEEcCCCCCCCCChhhhcCCCCCEEEccCCCCCCCCHHHHH
Q 023495 154 LVELDVSYNKITTLPDSIGCLRKLQKLSLEGNPLVSPPMDVVE 196 (281)
Q Consensus 154 L~~L~l~~n~i~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 196 (281)
|+.|+|++|.++.+|..+..+++|+.|+|++|.+.+.++..+.
T Consensus 295 L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 337 (727)
T 4b8c_D 295 LKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILT 337 (727)
T ss_dssp CSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred CCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHh
Confidence 7777777777777777777777777777777777776666554
No 116
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.71 E-value=3.6e-17 Score=123.46 Aligned_cols=126 Identities=21% Similarity=0.184 Sum_probs=101.4
Q ss_pred ccCCCcEEEccCCCCC--ccchhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEE
Q 023495 9 RLLNVVVLDVHSNQLK--CLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTL 86 (281)
Q Consensus 9 ~~~~L~~L~l~~~~l~--~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 86 (281)
..++++.|++++|+++ .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.++...+..+..+++|++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 4577899999999988 7788788889999999999988877 677888899999999998887444444468888888
Q ss_pred EccCCcCcccC--ccccCCCCCcEEEccCCcCCCChh----hhhCCCCCCeeecc
Q 023495 87 SINCNKIVILP--QSLTHLTSLRVLDARLNCLKSLPE----DLENLINLEVLNIS 135 (281)
Q Consensus 87 ~l~~~~l~~l~--~~~~~l~~L~~L~l~~n~l~~l~~----~~~~l~~L~~L~l~ 135 (281)
++++|.+..++ ..+..+++|++|++++|.++.++. .+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 88888888654 667888888888888888886654 57777888887765
No 117
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.71 E-value=2.5e-18 Score=153.20 Aligned_cols=182 Identities=22% Similarity=0.122 Sum_probs=93.9
Q ss_pred HhccCCCcEEEccCCCCCcc-chhcc-----CCCCCcEEEccCCCCCC-----cchhhhcCccCceeeccCCcCccc---
Q 023495 7 TARLLNVVVLDVHSNQLKCL-PNSIG-----CLSKLKVLDVSGNLLES-----LPKTIENCRSLEELNANFNKLRQL--- 72 (281)
Q Consensus 7 ~~~~~~L~~L~l~~~~l~~l-~~~~~-----~l~~L~~L~L~~n~l~~-----l~~~~~~l~~L~~L~L~~n~l~~~--- 72 (281)
+..+++|++|++++|.++.. +..+. ..++|++|++++|.++. ++..+..+++|++|++++|.++..
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 35566777777777766532 11121 24466666666666654 345555566666666666655421
Q ss_pred --ChhHhhcCCCCcEEEccCCcCcc-----cCccccCCCCCcEEEccCCcC-----------------------------
Q 023495 73 --PDTIGFELINLKTLSINCNKIVI-----LPQSLTHLTSLRVLDARLNCL----------------------------- 116 (281)
Q Consensus 73 --~~~~~~~l~~L~~L~l~~~~l~~-----l~~~~~~l~~L~~L~l~~n~l----------------------------- 116 (281)
.+.+...+++|++|++++|.+.. ++..+..+++|++|++++|.+
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 325 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence 12222234555556555555552 344444455555555555544
Q ss_pred CC-----ChhhhhCCCCCCeeecccccccccCCCccccC-----CCcccEEEcCCCCCC-----CCChhhhcCCCCCEEE
Q 023495 117 KS-----LPEDLENLINLEVLNISQNFQYLETLPYSIGL-----LMSLVELDVSYNKIT-----TLPDSIGCLRKLQKLS 181 (281)
Q Consensus 117 ~~-----l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-----~~~L~~L~l~~n~i~-----~~~~~~~~l~~L~~L~ 181 (281)
+. ++..+..+++|+.|++++| ......+..+.. .++|+.|++++|.++ .+|..+..+++|+.|+
T Consensus 326 ~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~ 404 (461)
T 1z7x_W 326 TAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELD 404 (461)
T ss_dssp BGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEE
T ss_pred chHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEE
Confidence 31 2333444555566666555 221111112211 445666666666665 4455556666666666
Q ss_pred ccCCCCCC
Q 023495 182 LEGNPLVS 189 (281)
Q Consensus 182 L~~n~l~~ 189 (281)
+++|++..
T Consensus 405 l~~N~i~~ 412 (461)
T 1z7x_W 405 LSNNCLGD 412 (461)
T ss_dssp CCSSSCCH
T ss_pred CCCCCCCH
Confidence 66666554
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.71 E-value=3.5e-17 Score=126.12 Aligned_cols=132 Identities=23% Similarity=0.175 Sum_probs=70.1
Q ss_pred CCCCcEEEccCCCCC--CcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEccCCcCcc-cCccccCCCCCcEE
Q 023495 33 LSKLKVLDVSGNLLE--SLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINCNKIVI-LPQSLTHLTSLRVL 109 (281)
Q Consensus 33 l~~L~~L~L~~n~l~--~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~l~~L~~L 109 (281)
.++|++|++++|.++ .+|..+..+++|++|++++|.++.+ ..+ ..+++|++|++++|.+.. +|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNL-PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSC-CCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhh-ccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 356677777777666 5665566666666666666666655 222 255566666666665554 44444445555666
Q ss_pred EccCCcCCCCh--hhhhCCCCCCeeecccccccccCCCc----cccCCCcccEEEcCCCCCCCCC
Q 023495 110 DARLNCLKSLP--EDLENLINLEVLNISQNFQYLETLPY----SIGLLMSLVELDVSYNKITTLP 168 (281)
Q Consensus 110 ~l~~n~l~~l~--~~~~~l~~L~~L~l~~n~~~~~~~~~----~~~~~~~L~~L~l~~n~i~~~~ 168 (281)
++++|.++.++ ..+..+++|+.|++++| .+...+. .+..+++|+.|++++|.+.++|
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N--~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNC--EVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSS--GGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCC--cCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 66555555543 33444444555554444 2222222 3344444444444444444433
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.70 E-value=3.2e-18 Score=160.60 Aligned_cols=153 Identities=24% Similarity=0.249 Sum_probs=82.6
Q ss_pred CCCcEEEccCCCCCccchhccCCCCCcEE-----EccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcE
Q 023495 11 LNVVVLDVHSNQLKCLPNSIGCLSKLKVL-----DVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKT 85 (281)
Q Consensus 11 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L-----~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 85 (281)
++++.|++.++.+..++..+.....|..+ ++..|.+...+..+..+..|+.|+|++|.+..++..++ .+++|++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~ 251 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIF-KYDFLTR 251 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCCSCCCGGGG-GCCSCSC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhc-CCCCCCE
Confidence 45667777777776654433222222222 23333333335566677777777777777777777776 7777777
Q ss_pred EEccCCcCcccCccccCCCCCcEEEccCCcCCCChhhhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCCC
Q 023495 86 LSINCNKIVILPQSLTHLTSLRVLDARLNCLKSLPEDLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKIT 165 (281)
Q Consensus 86 L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~ 165 (281)
|++++|.+..+|..+..+++|++|++++|.++.+|..++.+++|+.|+|++| .++.+|..++.+++|+.|+|++|.++
T Consensus 252 L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N--~l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDN--MVTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSS--CCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred EEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCC--CCCccChhhhcCCCccEEeCCCCccC
Confidence 7777777777777777777777777777777777777777777777777777 45567777777777777777777777
Q ss_pred C
Q 023495 166 T 166 (281)
Q Consensus 166 ~ 166 (281)
.
T Consensus 330 ~ 330 (727)
T 4b8c_D 330 K 330 (727)
T ss_dssp S
T ss_pred C
Confidence 3
No 120
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.69 E-value=2.3e-17 Score=146.96 Aligned_cols=187 Identities=22% Similarity=0.188 Sum_probs=100.3
Q ss_pred HhccCCCcEEEccCCCCCcc-chh-ccCCC----CCcEEEccCCCCC-----CcchhhhcCccCceeeccCCcCc-----
Q 023495 7 TARLLNVVVLDVHSNQLKCL-PNS-IGCLS----KLKVLDVSGNLLE-----SLPKTIENCRSLEELNANFNKLR----- 70 (281)
Q Consensus 7 ~~~~~~L~~L~l~~~~l~~l-~~~-~~~l~----~L~~L~L~~n~l~-----~l~~~~~~l~~L~~L~L~~n~l~----- 70 (281)
+..+++|++|++++|.++.. +.. +..+. +|++|++++|.++ .++..+..+++|++|++++|.++
T Consensus 52 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 131 (461)
T 1z7x_W 52 LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQ 131 (461)
T ss_dssp HHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHH
T ss_pred HHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHH
Confidence 34556666666666655532 111 12233 4666666666555 23445555555666666555543
Q ss_pred ------------------------ccC----hhHhhcCCCCcEEEccCCcCccc-----Cccc-cCCCCCcEEEccCCcC
Q 023495 71 ------------------------QLP----DTIGFELINLKTLSINCNKIVIL-----PQSL-THLTSLRVLDARLNCL 116 (281)
Q Consensus 71 ------------------------~~~----~~~~~~l~~L~~L~l~~~~l~~l-----~~~~-~~l~~L~~L~l~~n~l 116 (281)
... ......+++|++|++++|.+... ...+ ...++|+.|++++|.+
T Consensus 132 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 211 (461)
T 1z7x_W 132 LLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV 211 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCC
Confidence 211 11112345555555555554411 1111 1234666666666666
Q ss_pred CC-----ChhhhhCCCCCCeeecccccccccC----C-CccccCCCcccEEEcCCCCCCC-----CChhhhcCCCCCEEE
Q 023495 117 KS-----LPEDLENLINLEVLNISQNFQYLET----L-PYSIGLLMSLVELDVSYNKITT-----LPDSIGCLRKLQKLS 181 (281)
Q Consensus 117 ~~-----l~~~~~~l~~L~~L~l~~n~~~~~~----~-~~~~~~~~~L~~L~l~~n~i~~-----~~~~~~~l~~L~~L~ 181 (281)
+. ++..+..+++|++|++++| ..... + +..+..+++|+.|++++|.++. ++..+..+++|+.|+
T Consensus 212 ~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 290 (461)
T 1z7x_W 212 TSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELS 290 (461)
T ss_dssp BTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEE
T ss_pred cHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEE
Confidence 54 3455666777777777777 22111 1 1112246777888888887774 566677778888888
Q ss_pred ccCCCCCCCCHHH
Q 023495 182 LEGNPLVSPPMDV 194 (281)
Q Consensus 182 L~~n~l~~~~~~~ 194 (281)
+++|.+.......
T Consensus 291 Ls~n~i~~~~~~~ 303 (461)
T 1z7x_W 291 LAGNELGDEGARL 303 (461)
T ss_dssp CTTCCCHHHHHHH
T ss_pred CCCCCCchHHHHH
Confidence 8888775443333
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.67 E-value=5.9e-16 Score=122.03 Aligned_cols=123 Identities=27% Similarity=0.413 Sum_probs=94.6
Q ss_pred CcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEccCCc
Q 023495 13 VVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINCNK 92 (281)
Q Consensus 13 L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~ 92 (281)
-+++++++++++.+|..+. ++|++|++++|.++.+|..+..+++|++|++++|.++.+++..+..+++|++|++++|.
T Consensus 12 ~~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 3678888888888886553 57888888888888888888888888888888888888877766678888888888888
Q ss_pred CcccCc-cccCCCCCcEEEccCCcCCCChhh-hhCCCCCCeeecccc
Q 023495 93 IVILPQ-SLTHLTSLRVLDARLNCLKSLPED-LENLINLEVLNISQN 137 (281)
Q Consensus 93 l~~l~~-~~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~n 137 (281)
+..++. .+..+++|+.|++++|.++.++.. +..+++|+.|++++|
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 876644 577777888888888777766553 556666666666666
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.65 E-value=5.2e-16 Score=117.07 Aligned_cols=123 Identities=25% Similarity=0.240 Sum_probs=68.9
Q ss_pred ccCceeeccCCcCc--ccChhHhhcCCCCcEEEccCCcCcccCccccCCCCCcEEEccCCcCCC-ChhhhhCCCCCCeee
Q 023495 57 RSLEELNANFNKLR--QLPDTIGFELINLKTLSINCNKIVILPQSLTHLTSLRVLDARLNCLKS-LPEDLENLINLEVLN 133 (281)
Q Consensus 57 ~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~-l~~~~~~l~~L~~L~ 133 (281)
++|++|++++|.++ .+|..+. .+++|++|++++|.+..+ ..+..+++|++|++++|.++. +|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTD-EFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCT-TCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHh-hcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34444444444444 3333222 445555555555554444 344555666666666666664 555555566666666
Q ss_pred cccccccccCCC--ccccCCCcccEEEcCCCCCCCCCh----hhhcCCCCCEEEcc
Q 023495 134 ISQNFQYLETLP--YSIGLLMSLVELDVSYNKITTLPD----SIGCLRKLQKLSLE 183 (281)
Q Consensus 134 l~~n~~~~~~~~--~~~~~~~~L~~L~l~~n~i~~~~~----~~~~l~~L~~L~L~ 183 (281)
+++| .+..++ ..+..+++|+.|++++|.++.++. .+..+++|+.|+++
T Consensus 95 ls~N--~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGN--KIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTS--CCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCC--cCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 6666 233322 456666677777777777766654 56777777777665
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.65 E-value=1e-15 Score=120.55 Aligned_cols=122 Identities=22% Similarity=0.264 Sum_probs=75.1
Q ss_pred cEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcch--hhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEccCC
Q 023495 14 VVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPK--TIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINCN 91 (281)
Q Consensus 14 ~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~ 91 (281)
+++++++++++++|..+. .++++|++++|.++.++. .+..+++|++|++++|.++.+++..+..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 677777777777776553 267777777777776653 2667777777777777777665544446666666666666
Q ss_pred cCcccCc-cccCCCCCcEEEccCCcCCCC-hhhhhCCCCCCeeecccc
Q 023495 92 KIVILPQ-SLTHLTSLRVLDARLNCLKSL-PEDLENLINLEVLNISQN 137 (281)
Q Consensus 92 ~l~~l~~-~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n 137 (281)
.+..++. .+..+++|++|++++|.++.+ |..+..+++|+.|++++|
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 6664433 355566666666666655533 333444444444444444
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.65 E-value=2.7e-15 Score=118.16 Aligned_cols=128 Identities=23% Similarity=0.318 Sum_probs=89.6
Q ss_pred ceeeccCCcCcccChhHhhcCCCCcEEEccCCcCcccCc--cccCCCCCcEEEccCCcCCCC-hhhhhCCCCCCeeeccc
Q 023495 60 EELNANFNKLRQLPDTIGFELINLKTLSINCNKIVILPQ--SLTHLTSLRVLDARLNCLKSL-PEDLENLINLEVLNISQ 136 (281)
Q Consensus 60 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~l~~--~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~ 136 (281)
++++++++.++.+|..+. .++++|++++|.+..++. .+..+++|++|++++|.++.+ |..+..+++|+.|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 455566666655555432 256666666666665543 266677777777777777755 45677777777777777
Q ss_pred ccccccCCCccccCCCcccEEEcCCCCCCCC-ChhhhcCCCCCEEEccCCCCCCCC
Q 023495 137 NFQYLETLPYSIGLLMSLVELDVSYNKITTL-PDSIGCLRKLQKLSLEGNPLVSPP 191 (281)
Q Consensus 137 n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~l~~L~~L~L~~n~l~~~~ 191 (281)
| ...+..+..+..+++|+.|++++|+++.+ |..+..+++|+.|++++|++....
T Consensus 88 N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 88 N-KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp C-CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred C-cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 7 33444445577888899999999999855 678889999999999999998653
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.64 E-value=4.8e-16 Score=120.69 Aligned_cols=104 Identities=22% Similarity=0.205 Sum_probs=60.9
Q ss_pred CCcEEEccCCcCcccCccccCCCCCcEEEccCCcCCCChhh-hhCCCCCCeeecccccccccCCCc--cccCCCcccEEE
Q 023495 82 NLKTLSINCNKIVILPQSLTHLTSLRVLDARLNCLKSLPED-LENLINLEVLNISQNFQYLETLPY--SIGLLMSLVELD 158 (281)
Q Consensus 82 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~n~~~~~~~~~--~~~~~~~L~~L~ 158 (281)
+|++|++++|.+..+ ..+..+++|++|++++|.++.+|.. +..+++|+.|++++| .++.+|. .+..+++|+.|+
T Consensus 43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N--~i~~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN--SLVELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC--CCCCGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC--cCCcchhhHhhhcCCCCCEEE
Confidence 444444444444433 3344555555555555555544433 255555555555555 3344443 456667777777
Q ss_pred cCCCCCCCCChh----hhcCCCCCEEEccCCCCC
Q 023495 159 VSYNKITTLPDS----IGCLRKLQKLSLEGNPLV 188 (281)
Q Consensus 159 l~~n~i~~~~~~----~~~l~~L~~L~L~~n~l~ 188 (281)
+++|.+..+|.. +..+++|+.|++++|.+.
T Consensus 120 l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 120 ILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 777777766653 778888888888877653
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=3.4e-15 Score=117.67 Aligned_cols=127 Identities=24% Similarity=0.375 Sum_probs=91.9
Q ss_pred ceeeccCCcCcccChhHhhcCCCCcEEEccCCcCcccCccccCCCCCcEEEccCCcCCCChh-hhhCCCCCCeeeccccc
Q 023495 60 EELNANFNKLRQLPDTIGFELINLKTLSINCNKIVILPQSLTHLTSLRVLDARLNCLKSLPE-DLENLINLEVLNISQNF 138 (281)
Q Consensus 60 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~ 138 (281)
++++++++.++.+|..+ .+++++|++++|.+..+|..+..+++|+.|++++|.++.++. .+..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N- 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN- 88 (193)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred CEEEcCCCCCCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-
Confidence 45566666666666543 245667777777766666667777777777777777776654 4777777777777777
Q ss_pred ccccCCCccccCCCcccEEEcCCCCCCCCCh-hhhcCCCCCEEEccCCCCCCC
Q 023495 139 QYLETLPYSIGLLMSLVELDVSYNKITTLPD-SIGCLRKLQKLSLEGNPLVSP 190 (281)
Q Consensus 139 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~l~~L~~L~L~~n~l~~~ 190 (281)
......+..|..+++|+.|+|++|.++.+|. .+..+++|+.|++++|++...
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 3333344567888899999999999998875 588899999999999998653
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.61 E-value=2e-15 Score=128.81 Aligned_cols=64 Identities=9% Similarity=0.142 Sum_probs=52.0
Q ss_pred CChhHHhc--------cCCCcEEEccCCCCCccc-hhccCCCCCcEEEccCCCCCCc-chhhhcCccCceeeccC
Q 023495 2 IPESLTAR--------LLNVVVLDVHSNQLKCLP-NSIGCLSKLKVLDVSGNLLESL-PKTIENCRSLEELNANF 66 (281)
Q Consensus 2 ip~~~~~~--------~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~ 66 (281)
||+.+|.+ |.+|+.+++.+ +++.|+ .+|.+|++|+.+++.+|.+..+ +.+|..+.++..+....
T Consensus 84 I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 84 VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred cCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 67788888 99999999999 899885 4689999999999999988877 45677777777777655
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.61 E-value=2.1e-17 Score=130.87 Aligned_cols=137 Identities=24% Similarity=0.316 Sum_probs=81.7
Q ss_pred CCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEccCCcCcccCccccCCCCCcEEEccCCcCCCChhhhhC
Q 023495 46 LESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINCNKIVILPQSLTHLTSLRVLDARLNCLKSLPEDLEN 125 (281)
Q Consensus 46 l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~ 125 (281)
++.+|..+..+++|++|++++|.++.+| .+. .+++|++|++++|.+..+|..+..+++|+.|++++|.++.+| .+..
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~-~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~ 113 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNIEKIS-SLS-GMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEK 113 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEESCCC-CHH-HHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHH
T ss_pred HhhhhHHHhcCCCCCEEECCCCCCcccc-ccc-cCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cccc
Confidence 3344445666666666666666666555 332 566666666666666655555555566666666666666655 4566
Q ss_pred CCCCCeeecccccccccCCC--ccccCCCcccEEEcCCCCCCCC-C----------hhhhcCCCCCEEEccCCCCCC
Q 023495 126 LINLEVLNISQNFQYLETLP--YSIGLLMSLVELDVSYNKITTL-P----------DSIGCLRKLQKLSLEGNPLVS 189 (281)
Q Consensus 126 l~~L~~L~l~~n~~~~~~~~--~~~~~~~~L~~L~l~~n~i~~~-~----------~~~~~l~~L~~L~L~~n~l~~ 189 (281)
+++|+.|++++| .+..++ ..+..+++|+.|++++|.+... | ..+..+++|+.|+ ++.++.
T Consensus 114 l~~L~~L~l~~N--~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 114 LVNLRVLYMSNN--KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHSSEEEESEE--ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CCCCCEEECCCC--cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 666666666666 333333 2456666677777777766532 2 2367788888776 666654
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.60 E-value=1.1e-14 Score=112.93 Aligned_cols=123 Identities=29% Similarity=0.446 Sum_probs=74.9
Q ss_pred CcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCcch-hhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEccCC
Q 023495 13 VVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESLPK-TIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINCN 91 (281)
Q Consensus 13 L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~ 91 (281)
.+.+++++++++.+|..+. ++|++|++++|.++.++. .+..+++|++|++++|.++.+++..+..+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 4667777777777765432 567777777777776643 3566677777777777776666655445666666666666
Q ss_pred cCcccCcc-ccCCCCCcEEEccCCcCCCChhh-hhCCCCCCeeecccc
Q 023495 92 KIVILPQS-LTHLTSLRVLDARLNCLKSLPED-LENLINLEVLNISQN 137 (281)
Q Consensus 92 ~l~~l~~~-~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~n 137 (281)
.+..++.. +..+++|++|++++|.++.++.. +..+++|+.|++++|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence 66655432 45556666666666665555443 344445555555444
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.59 E-value=8.1e-16 Score=131.28 Aligned_cols=183 Identities=11% Similarity=0.140 Sum_probs=142.1
Q ss_pred cCCCcEEEccCCCCC--------------------ccc-hhccC--------CCCCcEEEccCCCCCCcc-hhhhcCccC
Q 023495 10 LLNVVVLDVHSNQLK--------------------CLP-NSIGC--------LSKLKVLDVSGNLLESLP-KTIENCRSL 59 (281)
Q Consensus 10 ~~~L~~L~l~~~~l~--------------------~l~-~~~~~--------l~~L~~L~L~~n~l~~l~-~~~~~l~~L 59 (281)
+++|++|||++|++. .+| .+|.+ +++|+.+++.+ .++.++ .+|.+|++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 788999999999988 443 34677 89999999998 888884 568899999
Q ss_pred ceeeccCCcCcccChhHhhcCCCCcEEEccCCcC----ccc-----------------------Cc--------------
Q 023495 60 EELNANFNKLRQLPDTIGFELINLKTLSINCNKI----VIL-----------------------PQ-------------- 98 (281)
Q Consensus 60 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l----~~l-----------------------~~-------------- 98 (281)
+.|++++|.+..+++..+..+.++..+....... ..+ +.
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF 206 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence 9999999998888888877776676666544111 000 00
Q ss_pred -------------c-ccCCCCCcEEEccCCcCCCChhh-hhCCCCCCeeecccccccccCCCccccCCCccc-EEEcCCC
Q 023495 99 -------------S-LTHLTSLRVLDARLNCLKSLPED-LENLINLEVLNISQNFQYLETLPYSIGLLMSLV-ELDVSYN 162 (281)
Q Consensus 99 -------------~-~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~-~L~l~~n 162 (281)
. ...+++|+.+++++|+++.++.. |.+|.+|+.+.+.+| ....-+..|.++.+|+ .+++..
T Consensus 207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~- 283 (329)
T 3sb4_A 207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA- 283 (329)
T ss_dssp EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-
T ss_pred EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-
Confidence 0 01278999999999999988774 899999999999988 3333345689999999 999988
Q ss_pred CCCCCC-hhhhcCCCCCEEEccCCCCCCCCHHHHH
Q 023495 163 KITTLP-DSIGCLRKLQKLSLEGNPLVSPPMDVVE 196 (281)
Q Consensus 163 ~i~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 196 (281)
.++.++ ..|.+|++|+.+++++|.++.++..++.
T Consensus 284 ~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~ 318 (329)
T 3sb4_A 284 SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFG 318 (329)
T ss_dssp TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTC
T ss_pred cceEEchhhhhCCccCCEEEeCCCccCccchhhhc
Confidence 788775 7899999999999999999888766653
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.59 E-value=6.5e-17 Score=128.04 Aligned_cols=151 Identities=23% Similarity=0.254 Sum_probs=118.3
Q ss_pred ccCCCcEEEccCCC-------CCccchhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCC
Q 023495 9 RLLNVVVLDVHSNQ-------LKCLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELI 81 (281)
Q Consensus 9 ~~~~L~~L~l~~~~-------l~~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 81 (281)
....++.++++++. ++.+|..+..+++|++|++++|.++.+| .+..+++|++|++++|.++.+|.... .++
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~-~~~ 93 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDA-VAD 93 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHH-HHH
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhh-cCC
Confidence 33444444444443 4455558889999999999999999888 88889999999999999998887654 678
Q ss_pred CCcEEEccCCcCcccCccccCCCCCcEEEccCCcCCCChh--hhhCCCCCCeeecccccccccCCCc----------ccc
Q 023495 82 NLKTLSINCNKIVILPQSLTHLTSLRVLDARLNCLKSLPE--DLENLINLEVLNISQNFQYLETLPY----------SIG 149 (281)
Q Consensus 82 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~--~~~~l~~L~~L~l~~n~~~~~~~~~----------~~~ 149 (281)
+|++|++++|.+..+| .+..+++|+.|++++|.++.++. .+..+++|+.|++++| ...+..|. .+.
T Consensus 94 ~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~ 171 (198)
T 1ds9_A 94 TLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN-PLYNDYKENNATSEYRIEVVK 171 (198)
T ss_dssp HCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC-HHHHHHHTTTTHHHHHHHHHH
T ss_pred cCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC-ccccccccccchHHHHHHHHH
Confidence 9999999999998876 67888999999999999998765 6889999999999999 33333332 267
Q ss_pred CCCcccEEEcCCCCCC
Q 023495 150 LLMSLVELDVSYNKIT 165 (281)
Q Consensus 150 ~~~~L~~L~l~~n~i~ 165 (281)
.+++|+.|| ++.++
T Consensus 172 ~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 172 RLPNLKKLD--GMPVD 185 (198)
T ss_dssp HCSSCSEEC--CGGGT
T ss_pred hCCCcEEEC--CcccC
Confidence 788999887 55555
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=4e-14 Score=109.82 Aligned_cols=130 Identities=28% Similarity=0.385 Sum_probs=85.2
Q ss_pred CceeeccCCcCcccChhHhhcCCCCcEEEccCCcCcccCc-cccCCCCCcEEEccCCcCCCChhh-hhCCCCCCeeeccc
Q 023495 59 LEELNANFNKLRQLPDTIGFELINLKTLSINCNKIVILPQ-SLTHLTSLRVLDARLNCLKSLPED-LENLINLEVLNISQ 136 (281)
Q Consensus 59 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~ 136 (281)
.+.++++++.++.+|..+ .++|++|++++|.+..++. .+..+++|++|++++|.++.++.. +..+++|+.|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 344555555555555332 2455566666655554443 345666666777766666665543 56677777777777
Q ss_pred ccccccCCCccccCCCcccEEEcCCCCCCCCChh-hhcCCCCCEEEccCCCCCCCCH
Q 023495 137 NFQYLETLPYSIGLLMSLVELDVSYNKITTLPDS-IGCLRKLQKLSLEGNPLVSPPM 192 (281)
Q Consensus 137 n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~-~~~l~~L~~L~L~~n~l~~~~~ 192 (281)
| ...+..+..+..+++|+.|++++|.++.+|.. +..+++|+.|++++|++....+
T Consensus 86 N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 N-KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred C-CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 7 23333333467788899999999999888754 5889999999999999987654
No 133
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.53 E-value=4.6e-14 Score=109.27 Aligned_cols=107 Identities=22% Similarity=0.299 Sum_probs=92.3
Q ss_pred CcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCc-chhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEccCC
Q 023495 13 VVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESL-PKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINCN 91 (281)
Q Consensus 13 L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~ 91 (281)
-+.+++++++++.+|..+. ++|++|++++|.++.+ |..|..+++|++|+|++|.++.++...+..+++|++|++++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 4789999999999987664 7899999999999988 667889999999999999999999887668899999999999
Q ss_pred cCcccCcc-ccCCCCCcEEEccCCcCCCChh
Q 023495 92 KIVILPQS-LTHLTSLRVLDARLNCLKSLPE 121 (281)
Q Consensus 92 ~l~~l~~~-~~~l~~L~~L~l~~n~l~~l~~ 121 (281)
.+..+|.. +..+++|+.|++++|.+...+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 99988765 8889999999999998885544
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.51 E-value=8.3e-14 Score=107.39 Aligned_cols=106 Identities=25% Similarity=0.329 Sum_probs=93.2
Q ss_pred CCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCc-chhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEccC
Q 023495 12 NVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESL-PKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINC 90 (281)
Q Consensus 12 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 90 (281)
..+.+++++++++.+|..+. ++|++|++++|.++.+ |..|..+++|++|+|++|.++.+++..+..+++|++|++++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 46789999999999987663 8899999999999988 66788999999999999999999998877899999999999
Q ss_pred CcCcccCc-cccCCCCCcEEEccCCcCCCC
Q 023495 91 NKIVILPQ-SLTHLTSLRVLDARLNCLKSL 119 (281)
Q Consensus 91 ~~l~~l~~-~~~~l~~L~~L~l~~n~l~~l 119 (281)
|.+..++. .+..+++|+.|++++|.+...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 99998766 488899999999999988743
No 135
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.50 E-value=2.5e-14 Score=131.24 Aligned_cols=179 Identities=15% Similarity=0.111 Sum_probs=92.0
Q ss_pred ccCCCcEEEccCCCCCcc-chhccC-CCC-CcEEEccCCC-CC--CcchhhhcCccCceeeccCCcCcccC----hhHhh
Q 023495 9 RLLNVVVLDVHSNQLKCL-PNSIGC-LSK-LKVLDVSGNL-LE--SLPKTIENCRSLEELNANFNKLRQLP----DTIGF 78 (281)
Q Consensus 9 ~~~~L~~L~l~~~~l~~l-~~~~~~-l~~-L~~L~L~~n~-l~--~l~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~ 78 (281)
++++|++|++++|.++.. +..+.. ++. |++|++++|. ++ .++.....+++|++|++++|.+.... ..+..
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 455555555555544421 222222 222 5555555553 11 11222235566666666666554321 11223
Q ss_pred cCCCCcEEEccCCcCc-----ccCccccCCCCCcEEEccCCcCCCChhhhhCCCCCCeeeccccccc--ccCCCccccCC
Q 023495 79 ELINLKTLSINCNKIV-----ILPQSLTHLTSLRVLDARLNCLKSLPEDLENLINLEVLNISQNFQY--LETLPYSIGLL 151 (281)
Q Consensus 79 ~l~~L~~L~l~~~~l~-----~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~~~--~~~~~~~~~~~ 151 (281)
.+++|++|++++|.+. .++..+.++++|+.|++++|.+..++..+..+++|+.|.++..... ....+..+..+
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~ 269 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP 269 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence 5666777776666654 2333445667777777777766666666666667776666533111 01222334444
Q ss_pred CcccEEEcCCCCCCCCChhhhcCCCCCEEEccCCCC
Q 023495 152 MSLVELDVSYNKITTLPDSIGCLRKLQKLSLEGNPL 187 (281)
Q Consensus 152 ~~L~~L~l~~n~i~~~~~~~~~l~~L~~L~L~~n~l 187 (281)
++|+.|+++++....+|..+..+++|+.|++++|.+
T Consensus 270 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l 305 (592)
T 3ogk_B 270 RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALL 305 (592)
T ss_dssp TTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCC
T ss_pred ccccccCccccchhHHHHHHhhcCCCcEEecCCCcC
Confidence 555555555544444555555566666666666654
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.47 E-value=5e-13 Score=116.92 Aligned_cols=179 Identities=12% Similarity=0.121 Sum_probs=91.6
Q ss_pred hHHhccCCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCc-chhhhcCccCceeeccCCcCcccChhHhhcCCCC
Q 023495 5 SLTARLLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESL-PKTIENCRSLEELNANFNKLRQLPDTIGFELINL 83 (281)
Q Consensus 5 ~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 83 (281)
..|.+|.+|+.+++.+|+++.++.....+.+|+.+.+.. .++.+ ..+|.++.+|+.+++..+ ++.++...|.. .+|
T Consensus 174 ~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L 250 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGI 250 (401)
T ss_dssp STTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCC
T ss_pred HHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCc
Confidence 344444455555554444444433222234444444442 24434 234445555555555442 44444444433 455
Q ss_pred cEEEccCCcCccc-CccccCCCCCcEEEccCCcCC-----CChh-hhhCCCCCCeeecccccccccCCCccccCCCcccE
Q 023495 84 KTLSINCNKIVIL-PQSLTHLTSLRVLDARLNCLK-----SLPE-DLENLINLEVLNISQNFQYLETLPYSIGLLMSLVE 156 (281)
Q Consensus 84 ~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~l~-----~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 156 (281)
+.+.+. +.+..+ ...|.++++|+.+++.++.+. .++. .|.+|++|+.+.+..+ ....-...|.+|.+|+.
T Consensus 251 ~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~aF~~c~~L~~ 327 (401)
T 4fdw_A 251 TTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQGLLGGNRKVTQ 327 (401)
T ss_dssp SEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCCSCCE
T ss_pred cEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhhhhhcCCCCccE
Confidence 555552 233333 234666666777666665543 2332 3666667777666643 22222335666677777
Q ss_pred EEcCCCCCCCCC-hhhhcCCCCCEEEccCCCCCCCC
Q 023495 157 LDVSYNKITTLP-DSIGCLRKLQKLSLEGNPLVSPP 191 (281)
Q Consensus 157 L~l~~n~i~~~~-~~~~~l~~L~~L~L~~n~l~~~~ 191 (281)
+++..+ ++.+. ..|.+| +|+.+++.+|.+..++
T Consensus 328 l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~ 361 (401)
T 4fdw_A 328 LTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVF 361 (401)
T ss_dssp EEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCC
T ss_pred EEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccc
Confidence 777443 55553 456666 7777777776665544
No 137
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.46 E-value=4.2e-14 Score=129.73 Aligned_cols=152 Identities=18% Similarity=0.124 Sum_probs=94.1
Q ss_pred HhccCCCcEEEccCCCCCc-----cchhccCCCCCcEEEccCCCCCC-----cchhhhcCccCceeeccCCcCcccChhH
Q 023495 7 TARLLNVVVLDVHSNQLKC-----LPNSIGCLSKLKVLDVSGNLLES-----LPKTIENCRSLEELNANFNKLRQLPDTI 76 (281)
Q Consensus 7 ~~~~~~L~~L~l~~~~l~~-----l~~~~~~l~~L~~L~L~~n~l~~-----l~~~~~~l~~L~~L~L~~n~l~~~~~~~ 76 (281)
..+|++|++|++++|.++. ++..+..+++|++|++++|.++. ++..+..+++|++|++++|.+..++..+
T Consensus 160 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~ 239 (592)
T 3ogk_B 160 VTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFF 239 (592)
T ss_dssp HHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHH
T ss_pred HhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHH
Confidence 3578899999999987653 22334567888888888888762 3445567888888888888877766444
Q ss_pred hhcCCCCcEEEccCC---------------------------cCcccCccccCCCCCcEEEccCCcCC--CChhhhhCCC
Q 023495 77 GFELINLKTLSINCN---------------------------KIVILPQSLTHLTSLRVLDARLNCLK--SLPEDLENLI 127 (281)
Q Consensus 77 ~~~l~~L~~L~l~~~---------------------------~l~~l~~~~~~l~~L~~L~l~~n~l~--~l~~~~~~l~ 127 (281)
. .+++|++|+++.. ....+|..+..+++|++|++++|.++ .+...+..++
T Consensus 240 ~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~ 318 (592)
T 3ogk_B 240 K-AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP 318 (592)
T ss_dssp H-HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCT
T ss_pred h-hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCc
Confidence 3 6677777776532 12233444556667777777777654 2222355666
Q ss_pred CCCeeecccccccccCCCccccCCCcccEEEcC
Q 023495 128 NLEVLNISQNFQYLETLPYSIGLLMSLVELDVS 160 (281)
Q Consensus 128 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~ 160 (281)
+|+.|+++++ .....++.....+++|++|+++
T Consensus 319 ~L~~L~L~~~-~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 319 NLEVLETRNV-IGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp TCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEE
T ss_pred CCCEEeccCc-cCHHHHHHHHHhCCCCCEEEee
Confidence 6666666633 1112222223345556666665
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.43 E-value=1.9e-14 Score=124.67 Aligned_cols=154 Identities=18% Similarity=0.190 Sum_probs=106.0
Q ss_pred cCCCcEEEccCCCCCcc-----chhcc-CCCCCcEEEccCCCCCCc--chhhhcCccCceeeccCCcCcccChh-----H
Q 023495 10 LLNVVVLDVHSNQLKCL-----PNSIG-CLSKLKVLDVSGNLLESL--PKTIENCRSLEELNANFNKLRQLPDT-----I 76 (281)
Q Consensus 10 ~~~L~~L~l~~~~l~~l-----~~~~~-~l~~L~~L~L~~n~l~~l--~~~~~~l~~L~~L~L~~n~l~~~~~~-----~ 76 (281)
++.|+.|++++|.++.. ...+. ...+|+.|+|++|.++.. ..-...+.+|++|+|++|.++..... +
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 46788999999988743 22222 236899999999988732 22233456889999999988643222 2
Q ss_pred hhcCCCCcEEEccCCcCcc-----cCccccCCCCCcEEEccCCcCCC-----ChhhhhCCCCCCeeecccccccccC---
Q 023495 77 GFELINLKTLSINCNKIVI-----LPQSLTHLTSLRVLDARLNCLKS-----LPEDLENLINLEVLNISQNFQYLET--- 143 (281)
Q Consensus 77 ~~~l~~L~~L~l~~~~l~~-----l~~~~~~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~L~l~~n~~~~~~--- 143 (281)
....++|++|++++|.+.. ++..+..+++|++|++++|.++. +...+...++|++|++++| .++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N--~i~~~g~ 228 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN--GAGDTAA 228 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS--CCCHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC--CCCHHHH
Confidence 1246789999998888862 44556778889999999888772 3445677778888888888 2322
Q ss_pred --CCccccCCCcccEEEcCCCCCC
Q 023495 144 --LPYSIGLLMSLVELDVSYNKIT 165 (281)
Q Consensus 144 --~~~~~~~~~~L~~L~l~~n~i~ 165 (281)
+...+...++|++|+|++|.|+
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHHhCCCCCEEeccCCCCC
Confidence 2333445678888888888887
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=1.2e-12 Score=101.34 Aligned_cols=99 Identities=30% Similarity=0.424 Sum_probs=54.7
Q ss_pred cEEEccCCCCCCcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEccCCcCcccCcc-ccCCCCCcEEEccCCc
Q 023495 37 KVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINCNKIVILPQS-LTHLTSLRVLDARLNC 115 (281)
Q Consensus 37 ~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~n~ 115 (281)
+.+++++|.++.+|..+. .+|++|++++|.++.+++..+..+++|++|++++|.+..+|.. +..+++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 556666666666655442 5566666666666665554444555566666655555555443 3455555555555555
Q ss_pred CCCChhh-hhCCCCCCeeecccc
Q 023495 116 LKSLPED-LENLINLEVLNISQN 137 (281)
Q Consensus 116 l~~l~~~-~~~l~~L~~L~l~~n 137 (281)
++.++.. +..+++|+.|++++|
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSS
T ss_pred cceeCHHHhccccCCCEEEeCCC
Confidence 5554443 444444444444444
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.40 E-value=2.2e-12 Score=99.35 Aligned_cols=106 Identities=24% Similarity=0.347 Sum_probs=77.1
Q ss_pred CcEEEccCCcCcccCccccCCCCCcEEEccCCcCCCC-hhhhhCCCCCCeeecccccccccCCC-ccccCCCcccEEEcC
Q 023495 83 LKTLSINCNKIVILPQSLTHLTSLRVLDARLNCLKSL-PEDLENLINLEVLNISQNFQYLETLP-YSIGLLMSLVELDVS 160 (281)
Q Consensus 83 L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~L~l~ 160 (281)
.+.++++++.+..+|..+. ++|+.|++++|.++.+ +..+..+++|++|++++| .+..++ ..|..+++|+.|+|+
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N--~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN--QLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS--CCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC--CcCccChhhccCCCCCCEEECC
Confidence 4556666666666665442 5677777777777766 345777777777777777 333443 346788899999999
Q ss_pred CCCCCCCCh-hhhcCCCCCEEEccCCCCCCCCH
Q 023495 161 YNKITTLPD-SIGCLRKLQKLSLEGNPLVSPPM 192 (281)
Q Consensus 161 ~n~i~~~~~-~~~~l~~L~~L~L~~n~l~~~~~ 192 (281)
+|+++.+|. .+..+++|+.|+|++|++.....
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 999998865 58899999999999999987653
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.40 E-value=1.4e-12 Score=114.02 Aligned_cols=172 Identities=12% Similarity=0.206 Sum_probs=92.3
Q ss_pred CChhHHhccCCCcEEEccCCCCCccch-hccCCCCCcEEEccCCCCCCc-chhhhcCccCceeeccCCcCcccChhHhhc
Q 023495 2 IPESLTARLLNVVVLDVHSNQLKCLPN-SIGCLSKLKVLDVSGNLLESL-PKTIENCRSLEELNANFNKLRQLPDTIGFE 79 (281)
Q Consensus 2 ip~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 79 (281)
|+...|.++ +|+.+.+..+ ++.|+. +|.+ .+|+.+.+.. .++.+ ..+|.+|.+|+.+++..|.++.++...+ .
T Consensus 127 I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF-~ 201 (401)
T 4fdw_A 127 IPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTF-V 201 (401)
T ss_dssp ECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTT-T
T ss_pred ehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhE-e
Confidence 455666665 5777777664 666643 4555 3577777765 55555 3556677777777777777777776666 3
Q ss_pred CCCCcEEEccCCcCcccC-ccccCCCCCcEEEccCCcCCCChhh-hhCCCCCCeeecccccccccCCCccccCCCcccEE
Q 023495 80 LINLKTLSINCNKIVILP-QSLTHLTSLRVLDARLNCLKSLPED-LENLINLEVLNISQNFQYLETLPYSIGLLMSLVEL 157 (281)
Q Consensus 80 l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 157 (281)
..+|+.+.+..+ +..++ ..|.++++|+.+++..+ ++.++.. |.+ .+|+.+.+..+ ....-...|..|++|+.+
T Consensus 202 ~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~--i~~I~~~aF~~c~~L~~l 276 (401)
T 4fdw_A 202 YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNG--VTNIASRAFYYCPELAEV 276 (401)
T ss_dssp TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETT--CCEECTTTTTTCTTCCEE
T ss_pred ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCC--ccEEChhHhhCCCCCCEE
Confidence 566777776533 44443 34666666666666553 3333222 222 44444444332 111112334444445555
Q ss_pred EcCCCCCC-----CCC-hhhhcCCCCCEEEcc
Q 023495 158 DVSYNKIT-----TLP-DSIGCLRKLQKLSLE 183 (281)
Q Consensus 158 ~l~~n~i~-----~~~-~~~~~l~~L~~L~L~ 183 (281)
++.++.+. .++ ..|.+|++|+.+.+.
T Consensus 277 ~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 277 TTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP 308 (401)
T ss_dssp EEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred EeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence 44444332 222 334444444444444
No 142
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.38 E-value=1e-13 Score=127.13 Aligned_cols=180 Identities=20% Similarity=0.231 Sum_probs=109.2
Q ss_pred HHhccCCCcEEEccCCCCCcc-chhcc-CCCCCcEEEccCC-CCCC--cchhhhcCccCceeeccCCcCcccChh----H
Q 023495 6 LTARLLNVVVLDVHSNQLKCL-PNSIG-CLSKLKVLDVSGN-LLES--LPKTIENCRSLEELNANFNKLRQLPDT----I 76 (281)
Q Consensus 6 ~~~~~~~L~~L~l~~~~l~~l-~~~~~-~l~~L~~L~L~~n-~l~~--l~~~~~~l~~L~~L~L~~n~l~~~~~~----~ 76 (281)
+...+++|++|++++|.++.. +..+. .+++|++|++++| .++. ++..+..+++|++|++++|.++..... +
T Consensus 100 l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 179 (594)
T 2p1m_B 100 MSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF 179 (594)
T ss_dssp HHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred HHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence 456788899999998887743 33443 5788899999888 5553 445555788888888888876543222 1
Q ss_pred hhcCCCCcEEEccCCc--Cc--ccCccccCCCCCcEEEccCC-cCCCChhhhhCCCCCCeeeccccc-------------
Q 023495 77 GFELINLKTLSINCNK--IV--ILPQSLTHLTSLRVLDARLN-CLKSLPEDLENLINLEVLNISQNF------------- 138 (281)
Q Consensus 77 ~~~l~~L~~L~l~~~~--l~--~l~~~~~~l~~L~~L~l~~n-~l~~l~~~~~~l~~L~~L~l~~n~------------- 138 (281)
...+++|++|+++++. +. .++.....+++|+.|++++| .++.++..+..+++|+.|.+..+.
T Consensus 180 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 259 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV 259 (594)
T ss_dssp CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHH
Confidence 1256688888887775 22 22223345678888888776 233444455555666666543220
Q ss_pred ----------------ccccCCCccccCCCcccEEEcCCCCCCC--CChhhhcCCCCCEEEccCC
Q 023495 139 ----------------QYLETLPYSIGLLMSLVELDVSYNKITT--LPDSIGCLRKLQKLSLEGN 185 (281)
Q Consensus 139 ----------------~~~~~~~~~~~~~~~L~~L~l~~n~i~~--~~~~~~~l~~L~~L~L~~n 185 (281)
.....++..+..+++|++|++++|.++. +...+..+++|+.|++++|
T Consensus 260 ~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 260 ALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred HHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 0111223333356777777777777552 2233456666666666665
No 143
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.37 E-value=1.8e-13 Score=125.44 Aligned_cols=186 Identities=18% Similarity=0.175 Sum_probs=133.6
Q ss_pred CChhHHhccCCCcEEEccCCC-CCcc---c------------hhccCCCCCcEEEccCCCCCCc-chhhh-cCccCceee
Q 023495 2 IPESLTARLLNVVVLDVHSNQ-LKCL---P------------NSIGCLSKLKVLDVSGNLLESL-PKTIE-NCRSLEELN 63 (281)
Q Consensus 2 ip~~~~~~~~~L~~L~l~~~~-l~~l---~------------~~~~~l~~L~~L~L~~n~l~~l-~~~~~-~l~~L~~L~ 63 (281)
.|..++.++++|++|+++++. +..+ | .....+++|++|++++|.++.. +..+. .+++|++|+
T Consensus 57 ~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~ 136 (594)
T 2p1m_B 57 SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLV 136 (594)
T ss_dssp CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEE
T ss_pred CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEe
Confidence 356678899999999999985 2211 1 1234678999999999988743 44454 689999999
Q ss_pred ccCC-cCcc--cChhHhhcCCCCcEEEccCCcCcc-----cCccccCCCCCcEEEccCCc--CC--CChhhhhCCCCCCe
Q 023495 64 ANFN-KLRQ--LPDTIGFELINLKTLSINCNKIVI-----LPQSLTHLTSLRVLDARLNC--LK--SLPEDLENLINLEV 131 (281)
Q Consensus 64 L~~n-~l~~--~~~~~~~~l~~L~~L~l~~~~l~~-----l~~~~~~l~~L~~L~l~~n~--l~--~l~~~~~~l~~L~~ 131 (281)
+++| .++. ++. +...+++|++|++++|.+.. ++.....+++|+.|++++|. +. .+.....++++|++
T Consensus 137 L~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~ 215 (594)
T 2p1m_B 137 LSSCEGFSTDGLAA-IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKS 215 (594)
T ss_dssp EESCEEEEHHHHHH-HHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCE
T ss_pred CCCcCCCCHHHHHH-HHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcE
Confidence 9998 5543 333 33379999999999998663 33334577899999999987 22 22233466899999
Q ss_pred eecccccccccCCCccccCCCcccEEEcCCCC--------------------------CC-----CCChhhhcCCCCCEE
Q 023495 132 LNISQNFQYLETLPYSIGLLMSLVELDVSYNK--------------------------IT-----TLPDSIGCLRKLQKL 180 (281)
Q Consensus 132 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~--------------------------i~-----~~~~~~~~l~~L~~L 180 (281)
|++++| ...+.++..+..+++|+.|+++.+. +. .++..+..+++|+.|
T Consensus 216 L~L~~~-~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L 294 (594)
T 2p1m_B 216 LKLNRA-VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTL 294 (594)
T ss_dssp EECCTT-SCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEE
T ss_pred EecCCC-CcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEE
Confidence 999998 3344466667778888888765442 11 234445578999999
Q ss_pred EccCCCCCC
Q 023495 181 SLEGNPLVS 189 (281)
Q Consensus 181 ~L~~n~l~~ 189 (281)
++++|.+..
T Consensus 295 ~L~~~~l~~ 303 (594)
T 2p1m_B 295 NLSYATVQS 303 (594)
T ss_dssp ECTTCCCCH
T ss_pred EccCCCCCH
Confidence 999998653
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.27 E-value=1.5e-11 Score=105.33 Aligned_cols=108 Identities=19% Similarity=0.110 Sum_probs=91.3
Q ss_pred ccCCCcEEEccCC-CCCccchhccCCCCCcEEEccC-CCCCCcc-hhhhcCccCceeeccCCcCcccChhHhhcCCCCcE
Q 023495 9 RLLNVVVLDVHSN-QLKCLPNSIGCLSKLKVLDVSG-NLLESLP-KTIENCRSLEELNANFNKLRQLPDTIGFELINLKT 85 (281)
Q Consensus 9 ~~~~L~~L~l~~~-~l~~l~~~~~~l~~L~~L~L~~-n~l~~l~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 85 (281)
.|.. ..++++++ +++.+|. +..+.+|++|+|++ |.++.++ ..|..+++|++|+|++|.++.+++..+..+++|+.
T Consensus 7 ~C~~-~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 84 (347)
T 2ifg_A 7 PHGS-SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84 (347)
T ss_dssp CSSS-SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred cccC-CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCE
Confidence 3443 35689988 8999998 99999999999996 9999885 67889999999999999999998888778999999
Q ss_pred EEccCCcCcccCccccCCCCCcEEEccCCcCCC
Q 023495 86 LSINCNKIVILPQSLTHLTSLRVLDARLNCLKS 118 (281)
Q Consensus 86 L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~ 118 (281)
|++++|.+..+|........|+.|++.+|.+..
T Consensus 85 L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 85 LNLSFNALESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp EECCSSCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred EeCCCCccceeCHHHcccCCceEEEeeCCCccC
Confidence 999999999887654333349999999998873
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.16 E-value=1.2e-10 Score=99.77 Aligned_cols=104 Identities=26% Similarity=0.248 Sum_probs=66.8
Q ss_pred EEEccCC-cCcccCccccCCCCCcEEEccC-CcCCCChh-hhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCC
Q 023495 85 TLSINCN-KIVILPQSLTHLTSLRVLDARL-NCLKSLPE-DLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSY 161 (281)
Q Consensus 85 ~L~l~~~-~l~~l~~~~~~l~~L~~L~l~~-n~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~ 161 (281)
.++.+++ .+..+|. +..+++|+.|++++ |.++.++. .|..+++|+.|+|++| ...+..|..|..+++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCC
Confidence 3455555 5666666 66666677777764 66665553 4666777777777776 34444455667777777777777
Q ss_pred CCCCCCChhhhcCCCCCEEEccCCCCCCC
Q 023495 162 NKITTLPDSIGCLRKLQKLSLEGNPLVSP 190 (281)
Q Consensus 162 n~i~~~~~~~~~l~~L~~L~L~~n~l~~~ 190 (281)
|+++.+|........|+.|+|.+|++...
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLHCS 118 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCCCC
T ss_pred CccceeCHHHcccCCceEEEeeCCCccCC
Confidence 77777764433333388888888877654
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.08 E-value=4e-11 Score=103.80 Aligned_cols=127 Identities=17% Similarity=0.158 Sum_probs=98.4
Q ss_pred cCCCcEEEccCCCCCcc--chhccCCCCCcEEEccCCCCCCc-----chhh-hcCccCceeeccCCcCcc-----cChhH
Q 023495 10 LLNVVVLDVHSNQLKCL--PNSIGCLSKLKVLDVSGNLLESL-----PKTI-ENCRSLEELNANFNKLRQ-----LPDTI 76 (281)
Q Consensus 10 ~~~L~~L~l~~~~l~~l--~~~~~~l~~L~~L~L~~n~l~~l-----~~~~-~~l~~L~~L~L~~n~l~~-----~~~~~ 76 (281)
+.+|++|+|++|.++.. ..-...+.+|+.|+|++|.++.. ...+ ...++|++|+|++|.++. +...+
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 47999999999998742 22223456899999999999743 2223 246789999999999874 33333
Q ss_pred hhcCCCCcEEEccCCcCc-----ccCccccCCCCCcEEEccCCcCCC-----ChhhhhCCCCCCeeecccc
Q 023495 77 GFELINLKTLSINCNKIV-----ILPQSLTHLTSLRVLDARLNCLKS-----LPEDLENLINLEVLNISQN 137 (281)
Q Consensus 77 ~~~l~~L~~L~l~~~~l~-----~l~~~~~~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~L~l~~n 137 (281)
. ..++|++|++++|.+. .++..+...++|+.|++++|.++. +...+...++|++|++++|
T Consensus 180 ~-~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 180 A-GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp H-TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred h-cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 3 7889999999999987 335567778899999999999983 3445677899999999999
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.95 E-value=6.8e-10 Score=95.53 Aligned_cols=176 Identities=15% Similarity=0.142 Sum_probs=110.6
Q ss_pred CCCcEEEccCCCCC--c-------cchhccCCCCCcEEEccCCCCC----------CcchhhhcCccCceeeccCCcCcc
Q 023495 11 LNVVVLDVHSNQLK--C-------LPNSIGCLSKLKVLDVSGNLLE----------SLPKTIENCRSLEELNANFNKLRQ 71 (281)
Q Consensus 11 ~~L~~L~l~~~~l~--~-------l~~~~~~l~~L~~L~L~~n~l~----------~l~~~~~~l~~L~~L~L~~n~l~~ 71 (281)
.+++.|.+...... . +..+...+++|+.|.+.+.... .+...+..+++|+.|.++++.-..
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~ 186 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS 186 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence 35667776654433 1 1223445678888888654321 244556778899999998773223
Q ss_pred cChhHhhcCCCCcEEEccCCcCccc-Cccc--cCCCCCcEEEccC--Cc------CCCChhhh--hCCCCCCeeeccccc
Q 023495 72 LPDTIGFELINLKTLSINCNKIVIL-PQSL--THLTSLRVLDARL--NC------LKSLPEDL--ENLINLEVLNISQNF 138 (281)
Q Consensus 72 ~~~~~~~~l~~L~~L~l~~~~l~~l-~~~~--~~l~~L~~L~l~~--n~------l~~l~~~~--~~l~~L~~L~l~~n~ 138 (281)
++. + .+++|+.|++..+.+..- ...+ ..+++|+.|+++. +. +..+...+ ..+++|++|++.+|
T Consensus 187 l~~-~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~- 262 (362)
T 2ra8_A 187 IGK-K--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA- 262 (362)
T ss_dssp CCS-C--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC-
T ss_pred ecc-c--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC-
Confidence 443 2 478899999988776521 1222 3678899998853 21 11222222 35789999999887
Q ss_pred ccccCCCccc---cCCCcccEEEcCCCCCCC-----CChhhhcCCCCCEEEccCCCCCCC
Q 023495 139 QYLETLPYSI---GLLMSLVELDVSYNKITT-----LPDSIGCLRKLQKLSLEGNPLVSP 190 (281)
Q Consensus 139 ~~~~~~~~~~---~~~~~L~~L~l~~n~i~~-----~~~~~~~l~~L~~L~L~~n~l~~~ 190 (281)
......+..+ ..+++|++|+|+.|.+.. ++..+..+++|+.|++++|.+...
T Consensus 263 ~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 263 EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred CCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 2222122222 246789999999998873 344556789999999999987644
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.94 E-value=1.4e-09 Score=84.71 Aligned_cols=109 Identities=16% Similarity=0.127 Sum_probs=68.1
Q ss_pred hhccCCCCCcEEEccCC-CCCC-----cchhhhcCccCceeeccCCcCcc-----cChhHhhcCCCCcEEEccCCcCc--
Q 023495 28 NSIGCLSKLKVLDVSGN-LLES-----LPKTIENCRSLEELNANFNKLRQ-----LPDTIGFELINLKTLSINCNKIV-- 94 (281)
Q Consensus 28 ~~~~~l~~L~~L~L~~n-~l~~-----l~~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~l~~~~l~-- 94 (281)
..+...+.|++|+|++| .+.. +...+...++|++|+|++|.+.. +...+. ..++|++|++++|.+.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~-~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLK-VNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHH-HCSSCCEEECCSSCCCHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHH-hCCCcCEEECcCCcCCHH
Confidence 33455666777777776 6652 33445556667777777776652 222222 4566777777777766
Q ss_pred ---ccCccccCCCCCcEEEc--cCCcCCC-----ChhhhhCCCCCCeeecccc
Q 023495 95 ---ILPQSLTHLTSLRVLDA--RLNCLKS-----LPEDLENLINLEVLNISQN 137 (281)
Q Consensus 95 ---~l~~~~~~l~~L~~L~l--~~n~l~~-----l~~~~~~l~~L~~L~l~~n 137 (281)
.+...+...++|++|++ ++|.++. +...+...+.|+.|++++|
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 24455666677888888 6777762 3344566677888888777
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.85 E-value=4.3e-09 Score=90.56 Aligned_cols=174 Identities=17% Similarity=0.167 Sum_probs=115.5
Q ss_pred hccCCCcEEEccCCCCC----------ccchhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcCcccCh-hH
Q 023495 8 ARLLNVVVLDVHSNQLK----------CLPNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKLRQLPD-TI 76 (281)
Q Consensus 8 ~~~~~L~~L~l~~~~l~----------~l~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l~~~~~-~~ 76 (281)
.++++|+.|.+.+.... .+...+..+++|+.|+++++.-..++. + .+++|++|++..+.+..-.. .+
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHH
Confidence 57889999999765331 244556778999999999873223433 3 48899999999888752211 12
Q ss_pred h-hcCCCCcEEEccCC--c------CcccCccc--cCCCCCcEEEccCCcCCC-Chhhh---hCCCCCCeeecccccccc
Q 023495 77 G-FELINLKTLSINCN--K------IVILPQSL--THLTSLRVLDARLNCLKS-LPEDL---ENLINLEVLNISQNFQYL 141 (281)
Q Consensus 77 ~-~~l~~L~~L~l~~~--~------l~~l~~~~--~~l~~L~~L~l~~n~l~~-l~~~~---~~l~~L~~L~l~~n~~~~ 141 (281)
. ..+++|++|+++.+ . +..+...+ ..+++|+.|++.+|.+.. .+..+ ..+++|++|+++.| ...
T Consensus 214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~ 292 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLT 292 (362)
T ss_dssp HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCB
T ss_pred HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCC
Confidence 1 26899999998531 1 22222222 357899999999998762 22222 35789999999988 322
Q ss_pred c----CCCccccCCCcccEEEcCCCCCCC-CChhhhc-CCCCCEEEccCCC
Q 023495 142 E----TLPYSIGLLMSLVELDVSYNKITT-LPDSIGC-LRKLQKLSLEGNP 186 (281)
Q Consensus 142 ~----~~~~~~~~~~~L~~L~l~~n~i~~-~~~~~~~-l~~L~~L~L~~n~ 186 (281)
. .++..+..+++|+.|++++|.++. .-..+.. + ...++++.+.
T Consensus 293 d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 293 DEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred hHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 2 133444668999999999998872 2233332 2 3568888876
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.81 E-value=6.3e-09 Score=80.98 Aligned_cols=62 Identities=11% Similarity=0.184 Sum_probs=26.7
Q ss_pred ccCCCcEEEccCC-CCCc-----cchhccCCCCCcEEEccCCCCCC-----cchhhhcCccCceeeccCCcCc
Q 023495 9 RLLNVVVLDVHSN-QLKC-----LPNSIGCLSKLKVLDVSGNLLES-----LPKTIENCRSLEELNANFNKLR 70 (281)
Q Consensus 9 ~~~~L~~L~l~~~-~l~~-----l~~~~~~l~~L~~L~L~~n~l~~-----l~~~~~~l~~L~~L~L~~n~l~ 70 (281)
..+.|++|+|++| .++. +...+...++|++|+|++|.++. +...+...++|++|+|++|.+.
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 3444455555544 4441 22333344444555555544441 2233333444555555544444
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.74 E-value=1.9e-07 Score=81.25 Aligned_cols=82 Identities=16% Similarity=0.314 Sum_probs=40.2
Q ss_pred ccCCCCCcEEEccCCcCCCChh-hhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCCCCCC-hhhhcCCCC
Q 023495 100 LTHLTSLRVLDARLNCLKSLPE-DLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKITTLP-DSIGCLRKL 177 (281)
Q Consensus 100 ~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~l~~L 177 (281)
+.++..|+.+.+. +.++.++. .|.+|.+|+.+.+..+ ....-..+|.+|.+|+.+.+..+ ++.+. ..|.+|.+|
T Consensus 284 F~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L 359 (394)
T 4gt6_A 284 FMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTAL 359 (394)
T ss_dssp TTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTC
T ss_pred cccccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCC
Confidence 3444444444443 22333333 2555566666665544 11111234556666666666433 45553 455666666
Q ss_pred CEEEccCC
Q 023495 178 QKLSLEGN 185 (281)
Q Consensus 178 ~~L~L~~n 185 (281)
+.+++.++
T Consensus 360 ~~i~~~~~ 367 (394)
T 4gt6_A 360 NNIEYSGS 367 (394)
T ss_dssp CEEEESSC
T ss_pred CEEEECCc
Confidence 66666554
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.71 E-value=5.2e-08 Score=84.87 Aligned_cols=181 Identities=15% Similarity=0.149 Sum_probs=86.8
Q ss_pred ChhHHhccCCCcEEEccCCCCCccc-hhccCCCCCcEEEccCCCCCCc-chhhhcCccCceeeccCCcC-----------
Q 023495 3 PESLTARLLNVVVLDVHSNQLKCLP-NSIGCLSKLKVLDVSGNLLESL-PKTIENCRSLEELNANFNKL----------- 69 (281)
Q Consensus 3 p~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~l----------- 69 (281)
+...|.+|.+|+.+.+.++ +..++ ..|.++.+|+.+.+..+ ++.+ ...|..+..|+.+.+..+..
T Consensus 154 ~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~ 231 (394)
T 4fs7_A 154 GDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTG 231 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCC
T ss_pred chhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCC
Confidence 4556677777877777653 44453 45677777777777654 4444 34455666666665544321
Q ss_pred ----------cccChhHhhcCCCCcEEEccCCcCcccCccccCCCCCcEEEccCCcCCCChhhhhCCCCCCeeecccccc
Q 023495 70 ----------RQLPDTIGFELINLKTLSINCNKIVILPQSLTHLTSLRVLDARLNCLKSLPEDLENLINLEVLNISQNFQ 139 (281)
Q Consensus 70 ----------~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~~ 139 (281)
+.+....+..+..++.+.+..+....-...+..+..++.+....+.+.. ..+..+.+|+.+.+..+
T Consensus 232 l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~-- 307 (394)
T 4fs7_A 232 VKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS-- 307 (394)
T ss_dssp CCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT--
T ss_pred CceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeecc--ccccccccccccccccc--
Confidence 1122222233344444444332221111223333333333332221111 12445555666555444
Q ss_pred cccCCCccccCCCcccEEEcCCCCCCCCC-hhhhcCCCCCEEEccCCCCCCCC
Q 023495 140 YLETLPYSIGLLMSLVELDVSYNKITTLP-DSIGCLRKLQKLSLEGNPLVSPP 191 (281)
Q Consensus 140 ~~~~~~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~l~~L~~L~L~~n~l~~~~ 191 (281)
....-..+|.+|.+|+.+++..+ ++.+. ..|.+|.+|+.+.+..+ ++.++
T Consensus 308 i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~ 358 (394)
T 4fs7_A 308 VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIG 358 (394)
T ss_dssp CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC
T ss_pred cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEeh
Confidence 11111234556666666666432 55453 45566666666666544 44433
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.69 E-value=1e-07 Score=82.94 Aligned_cols=132 Identities=15% Similarity=0.171 Sum_probs=85.0
Q ss_pred CChhHHhccCCCcEEEccCCCCCccc-hhccCCCCCcEEEccCCCCCCc-chhhhcCccCceeeccCC------------
Q 023495 2 IPESLTARLLNVVVLDVHSNQLKCLP-NSIGCLSKLKVLDVSGNLLESL-PKTIENCRSLEELNANFN------------ 67 (281)
Q Consensus 2 ip~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n------------ 67 (281)
|+..+|.+|.+|+.+.+.. .++.|. .+|.++.+|+.+++..+ ++.+ ..+|..+.+|+.+.+..+
T Consensus 62 Ig~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~ 139 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGC 139 (394)
T ss_dssp ECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTC
T ss_pred hHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecc
Confidence 6777899999999999975 588884 46899999999999764 6666 356777888887776543
Q ss_pred ---------cCcccChhHhhcCCCCcEEEccCCcCccc-CccccCCCCCcEEEccCCcCCCChh-hhhCCCCCCeeeccc
Q 023495 68 ---------KLRQLPDTIGFELINLKTLSINCNKIVIL-PQSLTHLTSLRVLDARLNCLKSLPE-DLENLINLEVLNISQ 136 (281)
Q Consensus 68 ---------~l~~~~~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~ 136 (281)
.+..+....+..+.+|+.+.+..+. ..+ ...|.++.+|+.+++..+ ++.+.. .+.++..|+.+.+..
T Consensus 140 ~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 140 DFKEITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp CCSEEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred cccccccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCC
Confidence 1112333445566677777765433 223 234666677777766554 333322 355566666665544
Q ss_pred c
Q 023495 137 N 137 (281)
Q Consensus 137 n 137 (281)
+
T Consensus 218 ~ 218 (394)
T 4fs7_A 218 S 218 (394)
T ss_dssp T
T ss_pred C
Confidence 4
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.61 E-value=2.8e-07 Score=80.17 Aligned_cols=58 Identities=14% Similarity=0.220 Sum_probs=27.3
Q ss_pred hhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCCCCCC-hhhhcCCCCCEEEcc
Q 023495 123 LENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKITTLP-DSIGCLRKLQKLSLE 183 (281)
Q Consensus 123 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~l~~L~~L~L~ 183 (281)
|.++.+|+.+.+..+ ....-...|..+.+|+.+.+. +.++.++ ..|.+|.+|+.+.+.
T Consensus 261 F~~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp 319 (394)
T 4gt6_A 261 FDSCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIP 319 (394)
T ss_dssp TTTCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECC
T ss_pred eeecccccEEecccc--cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeC
Confidence 455566666666544 111112234455555555553 2344443 344555555555554
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.36 E-value=5.1e-07 Score=73.98 Aligned_cols=101 Identities=22% Similarity=0.307 Sum_probs=62.0
Q ss_pred hccCCCcE--EEccCCCCCccchh----ccCCCCCcEEEccCCCCCCcc---hhhhcCccCceeeccCCcCcccChhHhh
Q 023495 8 ARLLNVVV--LDVHSNQLKCLPNS----IGCLSKLKVLDVSGNLLESLP---KTIENCRSLEELNANFNKLRQLPDTIGF 78 (281)
Q Consensus 8 ~~~~~L~~--L~l~~~~l~~l~~~----~~~l~~L~~L~L~~n~l~~l~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 78 (281)
...+.|+. ++++.|....++.. ..++++|+.|+|++|.++.++ ..+..+++|++|+|++|.+..+.. +.
T Consensus 138 ~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~-l~- 215 (267)
T 3rw6_A 138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE-LD- 215 (267)
T ss_dssp GGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG-GG-
T ss_pred CCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh-hh-
Confidence 33444444 55666654433321 245677888888888777553 455677888888888887776522 21
Q ss_pred cCC--CCcEEEccCCcCc-ccC-------ccccCCCCCcEEE
Q 023495 79 ELI--NLKTLSINCNKIV-ILP-------QSLTHLTSLRVLD 110 (281)
Q Consensus 79 ~l~--~L~~L~l~~~~l~-~l~-------~~~~~l~~L~~L~ 110 (281)
.+. +|++|++++|.+. .+| ..+..+++|+.||
T Consensus 216 ~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 216 KIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 233 7888888887776 233 2356677777776
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.23 E-value=8.6e-06 Score=70.25 Aligned_cols=186 Identities=15% Similarity=0.165 Sum_probs=111.4
Q ss_pred ChhHHhccCCCcEEEccCCCCCcc-------------chhccCCCCCcEEEccCCCCCCcchhhhcCccCceeeccCCcC
Q 023495 3 PESLTARLLNVVVLDVHSNQLKCL-------------PNSIGCLSKLKVLDVSGNLLESLPKTIENCRSLEELNANFNKL 69 (281)
Q Consensus 3 p~~~~~~~~~L~~L~l~~~~l~~l-------------~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~l 69 (281)
....|.++..++...+.......+ ...+.....+..+.+....-......+..+.+|+.+.+..+ +
T Consensus 150 ~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~ 228 (379)
T 4h09_A 150 KDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-V 228 (379)
T ss_dssp CSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-C
T ss_pred ccchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeEEeecccccccccceeeeccc-e
Confidence 445677888888888876543321 12233444555555544321112344556677777777544 5
Q ss_pred cccChhHhhcCCCCcEEEccCCcCcccC-ccccCCCCCcEEEccCCcCCCChh-hhhCCCCCCeeecccccccccCC-Cc
Q 023495 70 RQLPDTIGFELINLKTLSINCNKIVILP-QSLTHLTSLRVLDARLNCLKSLPE-DLENLINLEVLNISQNFQYLETL-PY 146 (281)
Q Consensus 70 ~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~-~~ 146 (281)
..+....+..+..|+.+.+..+ +..+. ..+..+.+|+.+.+..+ +..++. .+.+|.+|+.+.+.++ ....+ ..
T Consensus 229 ~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~--~i~~I~~~ 304 (379)
T 4h09_A 229 TTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNS--AIETLEPR 304 (379)
T ss_dssp CEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCT--TCCEECTT
T ss_pred eEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccccccccc--ccceehhh
Confidence 5566666667777777777554 44443 34667777777777543 444433 4677777887777655 23333 34
Q ss_pred cccCCCcccEEEcCCCCCCCCC-hhhhcCCCCCEEEccCCCCCCCCHHHH
Q 023495 147 SIGLLMSLVELDVSYNKITTLP-DSIGCLRKLQKLSLEGNPLVSPPMDVV 195 (281)
Q Consensus 147 ~~~~~~~L~~L~l~~n~i~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~ 195 (281)
.|.+|.+|+.+++..+ ++.+. .+|.+|.+|+.+.+..+ ++.+...++
T Consensus 305 aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF 352 (379)
T 4h09_A 305 VFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAF 352 (379)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred hhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHh
Confidence 5777778888877653 66664 46777778877777543 555555444
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.19 E-value=9.3e-06 Score=70.04 Aligned_cols=160 Identities=12% Similarity=0.136 Sum_probs=95.7
Q ss_pred cCCCcEEEccCCCCCccchhccCCCCCcEEEccCCCCCCc-chhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEc
Q 023495 10 LLNVVVLDVHSNQLKCLPNSIGCLSKLKVLDVSGNLLESL-PKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSI 88 (281)
Q Consensus 10 ~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 88 (281)
+..+..+.+...........+..+..|+.+.+..+ +..+ ...+..+..|+.+.+..+ ++.+....+..+.+|+.+.+
T Consensus 193 ~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l 270 (379)
T 4h09_A 193 AKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNF 270 (379)
T ss_dssp TCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEE
T ss_pred cccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccc
Confidence 33444444443222112334566677777777553 4444 345666777777777654 66666666667777777777
Q ss_pred cCCcCcccC-ccccCCCCCcEEEccCCcCCCChh-hhhCCCCCCeeecccccccccCCCccccCCCcccEEEcCCCCCCC
Q 023495 89 NCNKIVILP-QSLTHLTSLRVLDARLNCLKSLPE-DLENLINLEVLNISQNFQYLETLPYSIGLLMSLVELDVSYNKITT 166 (281)
Q Consensus 89 ~~~~l~~l~-~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 166 (281)
..+ +..++ ..|..+.+|+.+.+..+.++.++. .|.+|.+|+.+.+..+ ....-..+|.+|.+|+.+.+..+ ++.
T Consensus 271 ~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip~~-v~~ 346 (379)
T 4h09_A 271 YAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYPKS-ITL 346 (379)
T ss_dssp CCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCCTT-CCE
T ss_pred ccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEECCc-cCE
Confidence 543 44443 346777778888777777776644 4777778887777655 22222345777777877777543 555
Q ss_pred CC-hhhhcCC
Q 023495 167 LP-DSIGCLR 175 (281)
Q Consensus 167 ~~-~~~~~l~ 175 (281)
+. .+|.++.
T Consensus 347 I~~~aF~~c~ 356 (379)
T 4h09_A 347 IESGAFEGSS 356 (379)
T ss_dssp ECTTTTTTSS
T ss_pred EchhHhhCCC
Confidence 53 4455543
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.17 E-value=8.2e-07 Score=72.78 Aligned_cols=78 Identities=26% Similarity=0.253 Sum_probs=46.2
Q ss_pred cCCCCCcEEEccCCcCCCCh---hhhhCCCCCCeeecccccccccCCCccccCCC--cccEEEcCCCCCC-CCC------
Q 023495 101 THLTSLRVLDARLNCLKSLP---EDLENLINLEVLNISQNFQYLETLPYSIGLLM--SLVELDVSYNKIT-TLP------ 168 (281)
Q Consensus 101 ~~l~~L~~L~l~~n~l~~l~---~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~--~L~~L~l~~n~i~-~~~------ 168 (281)
..+++|+.|++++|.++.++ ..+..+++|+.|+|++| .+..+ ..+..+. +|++|+|++|.+. .+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N--~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN--ELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS--CCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC--ccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 34566777777777666543 34556677777777776 22222 1233333 7777777777776 344
Q ss_pred -hhhhcCCCCCEEE
Q 023495 169 -DSIGCLRKLQKLS 181 (281)
Q Consensus 169 -~~~~~l~~L~~L~ 181 (281)
..+..+++|+.||
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 2356777777765
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.01 E-value=1.2e-05 Score=62.46 Aligned_cols=106 Identities=19% Similarity=0.163 Sum_probs=55.0
Q ss_pred cCCCCCcEEEccCC-CCC-----CcchhhhcCccCceeeccCCcCc-----ccChhHhhcCCCCcEEEccCCcCc-----
Q 023495 31 GCLSKLKVLDVSGN-LLE-----SLPKTIENCRSLEELNANFNKLR-----QLPDTIGFELINLKTLSINCNKIV----- 94 (281)
Q Consensus 31 ~~l~~L~~L~L~~n-~l~-----~l~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~l~~~~l~----- 94 (281)
.+-+.|+.|+|+++ .|. .+..++..-..|+.|+|++|.+. .+...+. .-..|++|+++.|.+.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~-~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIE-TSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHH-HCSSCCEEECCSSBCCHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHh-cCCccCeEecCCCcCCHHHHH
Confidence 34455666666553 554 12344444555666666666554 2222222 3455666666666655
Q ss_pred ccCccccCCCCCcEEEccCC---cCC-----CChhhhhCCCCCCeeecccc
Q 023495 95 ILPQSLTHLTSLRVLDARLN---CLK-----SLPEDLENLINLEVLNISQN 137 (281)
Q Consensus 95 ~l~~~~~~l~~L~~L~l~~n---~l~-----~l~~~~~~l~~L~~L~l~~n 137 (281)
.+.+.+..-+.|+.|+++++ .+. .+...+..-+.|+.|+++.|
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 23344555556777777644 223 12233455566777766655
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.92 E-value=1.3e-05 Score=61.22 Aligned_cols=82 Identities=12% Similarity=0.030 Sum_probs=44.6
Q ss_pred CCCcEEEccCCCCCCc-chhhhcCccCceeeccCCc-CcccChhHhhc----CCCCcEEEccCCc-Cccc-CccccCCCC
Q 023495 34 SKLKVLDVSGNLLESL-PKTIENCRSLEELNANFNK-LRQLPDTIGFE----LINLKTLSINCNK-IVIL-PQSLTHLTS 105 (281)
Q Consensus 34 ~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~----l~~L~~L~l~~~~-l~~l-~~~~~~l~~ 105 (281)
..|+.||++++.++.. -..+..+++|++|+|++|. ++.-.-..... .++|++|++++|. ++.- -..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 4567777777666532 2345566677777777663 44211111112 2357777776664 5411 123456777
Q ss_pred CcEEEccCCc
Q 023495 106 LRVLDARLNC 115 (281)
Q Consensus 106 L~~L~l~~n~ 115 (281)
|+.|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777764
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.92 E-value=3.7e-06 Score=64.25 Aligned_cols=86 Identities=19% Similarity=0.277 Sum_probs=55.0
Q ss_pred CCCcEEEccCCcCCCC-hhhhhCCCCCCeeecccccccccCCCccccCC----CcccEEEcCCC-CCCCC-ChhhhcCCC
Q 023495 104 TSLRVLDARLNCLKSL-PEDLENLINLEVLNISQNFQYLETLPYSIGLL----MSLVELDVSYN-KITTL-PDSIGCLRK 176 (281)
Q Consensus 104 ~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~----~~L~~L~l~~n-~i~~~-~~~~~~l~~ 176 (281)
..|+.||++++.++.. -..+..+++|++|+|++|......--..+..+ ++|++|+|++| +|+.- -..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 4677777777776622 12356777888888887732222222234442 46889999888 47621 245678899
Q ss_pred CCEEEccCCC-CCC
Q 023495 177 LQKLSLEGNP-LVS 189 (281)
Q Consensus 177 L~~L~L~~n~-l~~ 189 (281)
|+.|++++|+ ++.
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 9999999985 443
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.79 E-value=4.2e-05 Score=59.47 Aligned_cols=108 Identities=21% Similarity=0.218 Sum_probs=58.3
Q ss_pred hcCccCceeeccCC-cCc-----ccChhHhhcCCCCcEEEccCCcCc-----ccCccccCCCCCcEEEccCCcCC-----
Q 023495 54 ENCRSLEELNANFN-KLR-----QLPDTIGFELINLKTLSINCNKIV-----ILPQSLTHLTSLRVLDARLNCLK----- 117 (281)
Q Consensus 54 ~~l~~L~~L~L~~n-~l~-----~~~~~~~~~l~~L~~L~l~~~~l~-----~l~~~~~~l~~L~~L~l~~n~l~----- 117 (281)
..-+.|++|+|+++ .+. .+-..+. .-+.|+.|++++|.+. .+...+..-+.|+.|++++|.++
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~-~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAAC-NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHT-TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHh-hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 34456777777664 554 1222332 4456777777777665 33444555566777777777766
Q ss_pred CChhhhhCCCCCCeeecccccc-cccC-----CCccccCCCcccEEEcCCC
Q 023495 118 SLPEDLENLINLEVLNISQNFQ-YLET-----LPYSIGLLMSLVELDVSYN 162 (281)
Q Consensus 118 ~l~~~~~~l~~L~~L~l~~n~~-~~~~-----~~~~~~~~~~L~~L~l~~n 162 (281)
.+...+..-+.|+.|+|++|.. .++. +...+..-+.|..|+++.+
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 2333345555677777765411 1221 2223444556666766654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.36 E-value=0.00037 Score=50.44 Aligned_cols=55 Identities=24% Similarity=0.350 Sum_probs=31.8
Q ss_pred cEEEccCCCCC--ccchhccCCCCCcEEEccCCCCCCcc-hhhhcCccCceeeccCCcCc
Q 023495 14 VVLDVHSNQLK--CLPNSIGCLSKLKVLDVSGNLLESLP-KTIENCRSLEELNANFNKLR 70 (281)
Q Consensus 14 ~~L~l~~~~l~--~l~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~L~~n~l~ 70 (281)
.+++.++++++ .+|..+. .+|++|+|++|.|+.++ ..|..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 35666666666 6664332 34666666666666663 33455666666666666543
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.22 E-value=0.0005 Score=49.77 Aligned_cols=56 Identities=27% Similarity=0.258 Sum_probs=38.2
Q ss_pred cEEEccCCCCC--CcchhhhcCccCceeeccCCcCcccChhHhhcCCCCcEEEccCCcCc
Q 023495 37 KVLDVSGNLLE--SLPKTIENCRSLEELNANFNKLRQLPDTIGFELINLKTLSINCNKIV 94 (281)
Q Consensus 37 ~~L~L~~n~l~--~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~ 94 (281)
.+++-+++.++ .+|..+. .+|++|+|++|.++.++...+..+++|+.|++++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36677777776 6665432 35777777777777777777666777777777776554
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=82.35 E-value=0.9 Score=30.69 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=26.2
Q ss_pred CCCCccc-hhccCCCCCcEEEccCCCCCCc-chhhhcCccCceeeccCC
Q 023495 21 NQLKCLP-NSIGCLSKLKVLDVSGNLLESL-PKTIENCRSLEELNANFN 67 (281)
Q Consensus 21 ~~l~~l~-~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n 67 (281)
..++.|. .+|.++..|+.+.+.. .++.+ ..+|.+|.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcCC
Confidence 3455553 3466666666666655 34444 345666666666666544
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=79.18 E-value=3.5 Score=27.72 Aligned_cols=41 Identities=20% Similarity=0.183 Sum_probs=21.7
Q ss_pred CChhHHhccCCCcEEEccCCCCCccc-hhccCCCCCcEEEccC
Q 023495 2 IPESLTARLLNVVVLDVHSNQLKCLP-NSIGCLSKLKVLDVSG 43 (281)
Q Consensus 2 ip~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~L~~ 43 (281)
|..+.|.+|..|+.+.+-. .++.|. .+|.+|.+|+.+.+.+
T Consensus 11 I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCSCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECC
T ss_pred ecHHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcC
Confidence 4445555555565555554 244442 3455555555555554
Done!