Query 023496
Match_columns 281
No_of_seqs 252 out of 1795
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 07:49:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023496.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023496hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iuq_A Glycerol-3-phosphate ac 99.9 4.7E-26 1.6E-30 200.7 14.2 220 26-274 98-346 (367)
2 3efd_K KCSA; helix bundle, C-t 39.3 42 0.0014 17.5 3.7 26 252-277 3-28 (30)
3 3twe_A Alpha4H; unknown functi 37.9 40 0.0014 16.9 3.8 20 256-276 5-24 (27)
4 3cwc_A Putative glycerate kina 18.1 5E+02 0.017 22.8 8.3 37 139-177 287-323 (383)
5 1uf5_A N-carbamyl-D-amino acid 17.6 2.2E+02 0.0075 23.4 5.9 45 134-179 33-94 (303)
6 1y0n_A Hypothetical UPF0270 pr 16.6 1.4E+02 0.0049 19.9 3.4 43 105-149 18-60 (78)
7 2kw0_A CCMH protein; oxidoredu 15.3 2.9E+02 0.0099 18.8 5.8 50 214-265 4-53 (90)
8 3ivz_A Nitrilase; alpha-beta s 14.4 2.5E+02 0.0087 22.5 5.3 47 132-179 27-86 (262)
9 3m20_A 4-oxalocrotonate tautom 13.6 2.3E+02 0.0078 17.1 3.7 21 249-269 10-30 (62)
10 2e11_A Hydrolase; dimethylarse 13.1 1.9E+02 0.0065 23.3 4.2 54 126-181 23-84 (266)
No 1
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=99.93 E-value=4.7e-26 Score=200.74 Aligned_cols=220 Identities=15% Similarity=0.203 Sum_probs=150.8
Q ss_pred HHHHHHHHHHhhceeEEEcccchhhHhhcCCCCCcEEEEEcCCCCChHHHHhhhcCCC-ccccccceeEecchhhhhhcc
Q 023496 26 VGAFAKVVANFLNTTSVHNADTLINLVQSRPQGVPLISVSNHMSTLDDPVMWGFRGFP-TMDAELARWVLAAEDICFKNS 104 (281)
Q Consensus 26 ~~~~~~~~~~~~~r~~v~g~e~l~~~~~~~p~~~p~i~v~NH~s~~D~~~l~~~~~~~-~~~~~~~~~~~~~~~~l~~~p 104 (281)
...+.+.++.. .+.++.|.|++.+..++++.++++|+++||+|++|++++..++... -.....+.|+++ +++..+|
T Consensus 98 ~~~~ir~li~~-~~s~V~G~e~~~~~~E~l~~~~~vIfisNHQS~~D~~vi~~~l~~~~~~l~~~~~fVAk--~eL~~~P 174 (367)
T 1iuq_A 98 GQNYIRPLIDF-GNSFVGNLSLFKDIEEKLQQGHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAG--DRVLADP 174 (367)
T ss_dssp HHHHHGGGBCG-GGCEEECHHHHHHHHHHHHTTCEEEEEECCCCTTHHHHHHHHHTTTCHHHHHHCEEEEC--THHHHCT
T ss_pred HHHHHHHHHhh-cCCEeecchhhhhHHhhccCCCcEEEEECCccchhHHHHHHHHhhcccccccceEEEee--hhhhcCc
Confidence 33444444443 2678999998888888888899999999999999998887654210 001236778855 5588788
Q ss_pred hhhhhh--hcCceEEe----e------cCCCc-cHHHHHHHHHHhcC-CCeEEEeeCCccCCC---CCc--ccccchHHH
Q 023496 105 ILSYFF--RVGKCIPI----T------RGGGI-YQEHMNEALERLSD-GAWLHTFPEGKVSQE---DAP--IRQLKWGTA 165 (281)
Q Consensus 105 ~~~~~~--~~~g~ipv----~------r~~~~-~~~~l~~~~~~L~~-G~~v~IfPEG~~~~~---~~~--~~~~k~G~~ 165 (281)
+...+- +.++|++. + |++.+ +.++++++.+.|++ |.+++|||||||++. +|. ..+|+.|.+
T Consensus 175 l~~Pfs~g~~l~cI~~kk~id~~p~l~r~~~r~n~ksl~~~~~~Lk~GG~sI~IFPEGTRsR~~~~~g~l~~~~Fk~gs~ 254 (367)
T 1iuq_A 175 LCKPFSIGRNLICVYSKKHMFDIPELTETKRKANTRSLKEMALLLRGGSQLIWIAPSGGRDRPDPSTGEWYPAPFDASSV 254 (367)
T ss_dssp TTHHHHHTSEEEECCCGGGTTSSGGGHHHHHHHHHHHHHHHHHHHHHCCCEEEECTTCSCCCBCTTTCCBCCCCCCHHHH
T ss_pred cccchhhhhheeeEEecccCCCcchhhhhhhHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCCCCccccccccchhh
Confidence 774431 34556665 3 43333 67889999999999 559999999999985 344 566999999
Q ss_pred ----HHHHhCCCCCe-EEeeEEecccccCCCcc----cCCCCCCCCCCCCeEEEEECCcccCCchHHHHHHHhhcccCCC
Q 023496 166 ----SLIVRAPVTPI-VLPIVHRGFEEVMPENF----LFGRRPPVPLFNKRISIVVGEPIEFDIPKMRQMAISMSRDSLL 236 (281)
Q Consensus 166 ----~lA~~~~~~Pv-IvPv~i~g~~~~~~~~~----~~~~~~~~p~~~~~~~i~~g~Pi~~~~~~~~~~~~~~~~~~~~ 236 (281)
+||.++++ |. |||+++. +.+++|... -.+....+ . ++.+.|.||+||+++ ++...
T Consensus 255 ~~~~~LA~ksg~-P~hIvPvaI~-t~~imppp~~ve~~~g~~r~i-~-~~~V~v~ig~pI~~~--~l~~~---------- 318 (367)
T 1iuq_A 255 DNMRRLIQHSDV-PGHLFPLALL-CHDIMPPPSQVEIEIGEKRVI-A-FNGAGLSVAPEISFE--EIAAT---------- 318 (367)
T ss_dssp HHHHHHHHTSSS-CEEEEEEEEE-CGGGSCCC----------CCC-C-CBCCEEEECCCCCHH--HHHHT----------
T ss_pred hHHHHHHHHcCC-CceEEEEEEE-eccccCCccccccccccccee-e-cccEEEEECCccchh--hcccc----------
Confidence 99999999 73 8999999 567776521 01100011 1 378999999999988 33221
Q ss_pred CCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 023496 237 PGMGWPSTTPCGLDEAAQRCLYSSISDKIRTVLESLRI 274 (281)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~l~~ 274 (281)
.+.++++++++.+.+.+.|.+.+++|+.
T Consensus 319 ----------~e~~~e~~~~l~e~v~~~I~~~y~~l~~ 346 (367)
T 1iuq_A 319 ----------HKNPEEVREAYSKALFDSVAMQYNVLKT 346 (367)
T ss_dssp ----------SSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------ccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333455556777777777777777753
No 2
>3efd_K KCSA; helix bundle, C-terminus, immune system; 2.60A {Escherichia coli}
Probab=39.30 E-value=42 Score=17.54 Aligned_cols=26 Identities=12% Similarity=0.166 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023496 252 AAQRCLYSSISDKIRTVLESLRIFGK 277 (281)
Q Consensus 252 ~~~~~~~~~~~~~i~~~i~~l~~~~~ 277 (281)
++.++.|.+.++.+.+..+.|.+..+
T Consensus 3 ~Aa~eay~~atRALHeRFDRLEr~ld 28 (30)
T 3efd_K 3 KAAEEAYTRTTRALHERFDRLERMLD 28 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556777888899999888876544
No 3
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=37.89 E-value=40 Score=16.89 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 023496 256 CLYSSISDKIRTVLESLRIFG 276 (281)
Q Consensus 256 ~~~~~~~~~i~~~i~~l~~~~ 276 (281)
++|+++. .+++.++.||+..
T Consensus 5 elykele-dlqerlrklrkkl 24 (27)
T 3twe_A 5 ELYKELE-DLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHh
Confidence 4555543 4677777777654
No 4
>3cwc_A Putative glycerate kinase 2; structural genomics, center for structural genomics of infec diseases, csgid, IDP122, transferase; 2.23A {Salmonella typhimurium LT2}
Probab=18.07 E-value=5e+02 Score=22.80 Aligned_cols=37 Identities=22% Similarity=0.291 Sum_probs=26.3
Q ss_pred CCeEEEeeCCccCCCCCcccccchHHHHHHHhCCCCCeE
Q 023496 139 GAWLHTFPEGKVSQEDAPIRQLKWGTASLIVRAPVTPIV 177 (281)
Q Consensus 139 G~~v~IfPEG~~~~~~~~~~~~k~G~~~lA~~~~~~PvI 177 (281)
+--++|+=||..-. .....+.-.|++++|+++++ |||
T Consensus 287 ~ADLVITGEG~~D~-Qtl~GK~p~gVa~~A~~~~v-Pvi 323 (383)
T 3cwc_A 287 DADLVITGEGRIDS-QTIHGKVPIGVANIAKRYNK-PVI 323 (383)
T ss_dssp HCSEEEECCEESCC-----CHHHHHHHHHHHHTTC-CEE
T ss_pred CCCEEEECCCCCcC-cCCCCcHHHHHHHHHHHhCC-CEE
Confidence 34699999998743 22345566899999999999 843
No 5
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A
Probab=17.58 E-value=2.2e+02 Score=23.41 Aligned_cols=45 Identities=16% Similarity=0.013 Sum_probs=27.2
Q ss_pred HHhcCCCeEEEeeCCccCCCCCc-----------------ccccchHHHHHHHhCCCCCeEEe
Q 023496 134 ERLSDGAWLHTFPEGKVSQEDAP-----------------IRQLKWGTASLIVRAPVTPIVLP 179 (281)
Q Consensus 134 ~~L~~G~~v~IfPEG~~~~~~~~-----------------~~~~k~G~~~lA~~~~~~PvIvP 179 (281)
++.++|-.+++|||-..+..... ..+...-+..+|.+.++ .+|+.
T Consensus 33 ~a~~~gadlvv~PE~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~-~iv~G 94 (303)
T 1uf5_A 33 KAASRGANFIVFPELALTTFFPRWHFTDEAELDSFYETEMPGPVVRPLFEKAAELGI-GFNLG 94 (303)
T ss_dssp HHHHTTCSEEECCTTTTSCCGGGSCCCCHHHHHTTSBSSSSCTTTHHHHHHHHHHTC-EEEEE
T ss_pred HHHhcCCCEEEeccccccCCCccccccchhhhHHHHhhcCCCHHHHHHHHHHHHhCe-EEEEe
Confidence 44567878999999765421100 12334456778888888 54444
No 6
>1y0n_A Hypothetical UPF0270 protein PA3463; MCSG, midwest center for structural genomics, protein struct initiative, PSI, structural genomics; 2.00A {Pseudomonas aeruginosa} SCOP: d.291.1.1
Probab=16.56 E-value=1.4e+02 Score=19.85 Aligned_cols=43 Identities=14% Similarity=0.044 Sum_probs=26.9
Q ss_pred hhhhhhhcCceEEeecCCCccHHHHHHHHHHhcCCCeEEEeeCCc
Q 023496 105 ILSYFFRVGKCIPITRGGGIYQEHMNEALERLSDGAWLHTFPEGK 149 (281)
Q Consensus 105 ~~~~~~~~~g~ipv~r~~~~~~~~l~~~~~~L~~G~~v~IfPEG~ 149 (281)
++..|+.+-|.-+-+ .....+.+.++.+.|++|..+++|-|=.
T Consensus 18 LIeefv~RegtDyg~--E~sL~~kv~qv~~qL~~GeavIvfse~~ 60 (78)
T 1y0n_A 18 LLEDFVTREGTDNGD--ETPLDVRVERARHALRRGEAVILFDPES 60 (78)
T ss_dssp HHHHHHHCC---------CCHHHHHHHHHHHHHTTSEEEEECTTT
T ss_pred HHHHHHhcccccccc--cccHHHHHHHHHHHHHcCCEEEEECCCC
Confidence 455566555655422 1224677888999999999999997754
No 7
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=15.27 E-value=2.9e+02 Score=18.84 Aligned_cols=50 Identities=8% Similarity=0.095 Sum_probs=32.3
Q ss_pred CcccCCchHHHHHHHhhcccCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHH
Q 023496 214 EPIEFDIPKMRQMAISMSRDSLLPGMGWPSTTPCGLDEAAQRCLYSSISDKI 265 (281)
Q Consensus 214 ~Pi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 265 (281)
++..++++..++++..++..+-=+.|. +.+-.+.+....++++.++.+.|
T Consensus 4 ~~~~~~~~~~e~r~~~L~~~LRCpvCq--nqsI~dSnA~iA~dlR~~Vre~l 53 (90)
T 2kw0_A 4 DVLQFKDEAQEQQFRQLTEELRCPKCQ--NNSIADSNSMIATDLRQKVYELM 53 (90)
T ss_dssp SSCCCSSHHHHHHHHHHHHSSBCSCTT--SCTTTSCCCHHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHcCcCCCCC--CCchhhcCcHHHHHHHHHHHHHH
Confidence 344455667777777777776555554 55555555566667777777777
No 8
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Probab=14.43 E-value=2.5e+02 Score=22.55 Aligned_cols=47 Identities=19% Similarity=-0.024 Sum_probs=27.2
Q ss_pred HHHHhcCCCeEEEeeCCccCCCCCc-------------ccccchHHHHHHHhCCCCCeEEe
Q 023496 132 ALERLSDGAWLHTFPEGKVSQEDAP-------------IRQLKWGTASLIVRAPVTPIVLP 179 (281)
Q Consensus 132 ~~~~L~~G~~v~IfPEG~~~~~~~~-------------~~~~k~G~~~lA~~~~~~PvIvP 179 (281)
+.++.++|-.+++|||-..+..... ..+...-+..+|.+.++ .+|+.
T Consensus 27 i~~A~~~gadlvvfPE~~~~gy~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~~-~iv~G 86 (262)
T 3ivz_A 27 IKEASKQGAQLVVLPELFDTGYNFETREEVFEIAQKIPEGETTTFLMDVARDTGV-YIVAG 86 (262)
T ss_dssp HHHHHHTTCSEEECCTTTTTCSCCSCHHHHHHHCBCTTTSHHHHHHHHHHHHHCC-EEEEE
T ss_pred HHHHHHCCCCEEEeCCCcccCCCCCCHHHHHHhcCccCCCHHHHHHHHHHHHcCc-EEEEe
Confidence 3344567888999999765421110 01233446667888887 53443
No 9
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=13.57 E-value=2.3e+02 Score=17.14 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=14.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHH
Q 023496 249 LDEAAQRCLYSSISDKIRTVL 269 (281)
Q Consensus 249 ~~~~~~~~~~~~~~~~i~~~i 269 (281)
.+.+..+++++++++.+.+.+
T Consensus 10 rt~eqK~~L~~~it~~~~~~l 30 (62)
T 3m20_A 10 LDVGKKREFVERLTSVAAEIY 30 (62)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHh
Confidence 446667777777777776654
No 10
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV}
Probab=13.15 E-value=1.9e+02 Score=23.34 Aligned_cols=54 Identities=11% Similarity=-0.149 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCeEEEeeCCccCCCCCcc--------cccchHHHHHHHhCCCCCeEEeeE
Q 023496 126 QEHMNEALERLSDGAWLHTFPEGKVSQEDAPI--------RQLKWGTASLIVRAPVTPIVLPIV 181 (281)
Q Consensus 126 ~~~l~~~~~~L~~G~~v~IfPEG~~~~~~~~~--------~~~k~G~~~lA~~~~~~PvIvPv~ 181 (281)
....+.+.++ ++|-.+++|||...+...... .+...-+..+|.+.++ .+|+...
T Consensus 23 ~~~~~~i~~a-~~gadlvv~PE~~~~gy~~~~~~~a~~~~~~~~~~l~~~a~~~~~-~iv~G~~ 84 (266)
T 2e11_A 23 DYYGALLEPL-AGQSDLVILPETFTSGFSNEAIDKAEDMDGPTVAWIRTQAARLGA-AITGSVQ 84 (266)
T ss_dssp HHHHHHHGGG-TTTCSEEECCTTTTTCSCSGGGGGCEETTSHHHHHHHHHHHHHTS-EEEEEEE
T ss_pred HHHHHHHHHh-cCCCCEEECCCCccccCChhHHHhhccCCCHHHHHHHHHHHHhCC-EEEEeee
Done!