BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023497
(281 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CIR|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes
For A D-Hexose-6-Phosphate Mutarotase. Complex With
Glucose-6-Phosphate
pdb|2CIS|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes
For A D-Hexose-6-Phosphate Mutarotase. Complex With
Tagatose-6-Phosphate
Length = 297
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 117/251 (46%), Gaps = 20/251 (7%)
Query: 33 KAIRGGIPVCFPQFG------NLGLLEQHGFARNRFWSLDEDASPLPPANNQSTVDLILK 86
K +RGGIP+ FP FG +L L QHG ARN W PP TV LK
Sbjct: 54 KPVRGGIPLVFPVFGKNSTDEHLSKLPQHGLARNSTWEFLGQTKENPP-----TVQFGLK 108
Query: 87 ---STEEDIKAWPRGFELRLRISISPGKLTLIPRVRNVDN-KAFSFMFALRNYLSVSDIS 142
+ E K WP + L L + + L V N + K F + Y + DI
Sbjct: 109 PEIANPELTKLWPMDYLLILTVELGSDYLKTAIEVENTSSSKELKFNWLFHTYFRIEDIE 168
Query: 143 EVRVEGLETLDYFDYLMNKERFTEQADAITFDGEIDRVY--LSTPTKIAIIDHEKKRTFE 200
V L + +D L+ KE + ++ +TF+ E D +Y +S I I+D + +
Sbjct: 169 GTMVSNLAGMKLYDQLL-KESYVDKHPVVTFNQETDVIYQNVSAERAIQIVD-KGVQIHT 226
Query: 201 LRKDGMPDSVVWNPWDKKAKALPDMG-VDGYKTMLCVDSAAIENPIVLKPFEEWRGRQEL 259
L++ +PD+VVWNPW +K++ + D GY+ M+C++ + + I L P ++W Q L
Sbjct: 227 LKRYNLPDTVVWNPWIEKSQGMADFEPKTGYQQMICIEPGHVHDFISLAPGKKWNAYQLL 286
Query: 260 STVSSSYCSGQ 270
Y + Q
Sbjct: 287 XKEELKYQAIQ 297
>pdb|2CIQ|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes
For A D-Hexose-6-Phosphate Mutarotase
Length = 297
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 117/251 (46%), Gaps = 20/251 (7%)
Query: 33 KAIRGGIPVCFPQFG------NLGLLEQHGFARNRFWSLDEDASPLPPANNQSTVDLILK 86
K +RGGIP+ FP FG +L L QHG ARN W PP TV LK
Sbjct: 54 KPVRGGIPLVFPVFGKNSTDEHLSKLPQHGLARNSTWEFLGQTKENPP-----TVQFGLK 108
Query: 87 ---STEEDIKAWPRGFELRLRISISPGKLTLIPRVRNVDN-KAFSFMFALRNYLSVSDIS 142
+ E K WP + L L + + L V N + K F + Y + DI
Sbjct: 109 PEIANPELTKLWPMDYLLILTVELGSDYLKTAIEVENTSSSKELKFNWLFHTYFRIEDIE 168
Query: 143 EVRVEGLETLDYFDYLMNKERFTEQADAITFDGEIDRVY--LSTPTKIAIIDHEKKRTFE 200
V L + +D L+ KE + ++ +TF+ E D +Y +S I I+D + +
Sbjct: 169 GTMVSNLAGMKLYDQLL-KESYVDKHPVVTFNQETDVIYQNVSAERAIQIVD-KGVQIHT 226
Query: 201 LRKDGMPDSVVWNPWDKKAKALPDMG-VDGYKTMLCVDSAAIENPIVLKPFEEWRGRQEL 259
L++ +PD+VVWNPW +K++ + D GY+ M+C++ + + I L P ++W Q L
Sbjct: 227 LKRYNLPDTVVWNPWIEKSQGMADFEPKTGYQQMICIEPGHVHDFISLAPGKKWNAYQLL 286
Query: 260 STVSSSYCSGQ 270
Y + Q
Sbjct: 287 CKEELKYQAIQ 297
>pdb|2HTA|A Chain A, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Orthorhombic Form
pdb|2HTA|B Chain B, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Orthorhombic Form
pdb|2HTB|A Chain A, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Monoclinic Form
pdb|2HTB|B Chain B, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Monoclinic Form
pdb|2HTB|C Chain C, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Monoclinic Form
pdb|2HTB|D Chain D, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Monoclinic Form
Length = 309
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 104/217 (47%), Gaps = 20/217 (9%)
Query: 34 AIRGGIPVCFPQFGNLGL--LEQHGFARNRFWSL---DEDASPLPPANNQSTVDLILKST 88
A+RGG+P+C+P FG L HGFARN W+L +ED +N + L+S+
Sbjct: 87 ALRGGVPICWPWFGPAAQQGLPSHGFARNLPWALKAHNED-------DNGVMLTFELQSS 139
Query: 89 EEDIKAWPRGFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALRNYLSVSDISEVRVEG 148
E K WP F L R + GK I + + F+ AL +Y +V DI+ V+V G
Sbjct: 140 EATRKYWPHDFTLLARFKV--GKTCEIELEAHGE---FATTSALHSYFNVGDIANVKVSG 194
Query: 149 LETLDYFDYLMNKERFTEQADAI-TFDGEIDRVYLSTPTKIAIIDHEKKRTFELRKDGMP 207
L D F +N + D I TF DRVYL+ I D RT ++
Sbjct: 195 LG--DRFIDKVNDAKEGVLTDGIQTFPDRTDRVYLNPEACSVIHDATLNRTIDVVHHHHL 252
Query: 208 DSVVWNPWDKKAKALPDMGVDGYKTMLCVDSAAIENP 244
+ V WNP + ++ DM DGYKT +CV++ P
Sbjct: 253 NVVGWNPGPALSVSMGDMPDDGYKTFVCVETVYATAP 289
>pdb|1JOV|A Chain A, Crystal Structure Analysis Of Hi1317
Length = 270
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 104/246 (42%), Gaps = 48/246 (19%)
Query: 14 RIILTEPTGSSAESFW-------KPPKAIRGGIPVCFPQFGNLGLLEQHGFARNRFWSLD 66
++I +P + + W K AIRGG+P+C+P FG + HG AR R W L
Sbjct: 41 QLISWKPQNAKQDVLWLSEVEPFKNGNAIRGGVPICYPWFGGVKQ-PAHGTARIRLWQLS 99
Query: 67 EDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISPGKLTLIPRVRNVDNKAF 126
+ + FEL ++I K++++ D
Sbjct: 100 HYYISVHKVRLE--------------------FELFSDLNIIEAKVSMVF----TDKCHL 135
Query: 127 SFMF--------ALRNYLSVSDISEVRVEGL-ETLDYFDYLMNKERFTEQADAITFDGEI 177
+F AL Y ++ DI++V V+GL ET F+ L ++ I+ + +
Sbjct: 136 TFTHYGEESAQAALHTYFNIGDINQVEVQGLPETC--FNSLNQQQENVPSPRHISEN--V 191
Query: 178 DRVYLSTPTKIAIIDHEKKRTFELRKDGMPDSVVWNPWDKKAKALPDMGVDGYKTMLCVD 237
D +Y + + I+D RT L V+WNPW KK + + GY+ MLC++
Sbjct: 192 DCIYSAENMQNQILDKSFNRTIALHHHNASQFVLWNPWHKKTSGMSE---TGYQKMLCLE 248
Query: 238 SAAIEN 243
+A I +
Sbjct: 249 TARIHH 254
>pdb|3K25|A Chain A, Crystal Structure Of Slr1438 Protein From Synechocystis
Sp. Pcc 6803, Northeast Structural Genomics Consortium
Target Sgr112
pdb|3K25|B Chain B, Crystal Structure Of Slr1438 Protein From Synechocystis
Sp. Pcc 6803, Northeast Structural Genomics Consortium
Target Sgr112
Length = 289
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 69/164 (42%), Gaps = 25/164 (15%)
Query: 26 ESFWKPPKAIRGGIPVCFPQFGNLGL-----------LEQHGFARNRFWSLDEDASPLPP 74
E F P ++RGGIP+ FP GNL L+QHGFAR+ W + +
Sbjct: 51 ERFQDPSLSVRGGIPILFPICGNLPQDQFNHAGKSYRLKQHGFARDLPWEVIGQQT---- 106
Query: 75 ANNQSTVDLILKSTEEDIKAWPRGFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALRN 134
+ + +DL L + ++A+P FEL + L + R+ N+ ++ F
Sbjct: 107 -QDNARLDLRLSHNDATLEAFPFAFELVFSYQLQGHSLRIEQRIANLGDQRXPFSLGFHP 165
Query: 135 YLSVSDISEVRVEGLETLDYFDYLMNKERFTEQADAITFDGEID 178
Y + + + + DY D + D +DG+++
Sbjct: 166 YFFCREKLGITL-AIPANDYLD--------QKTGDCHGYDGQLN 200
>pdb|3DCD|A Chain A, X-Ray Structure Of The Galactose Mutarotase Related Enzyme
Q5fkd7 From Lactobacillus Acidophilus At The Resolution
1.9a. Northeast Structural Genomics Consortium Target
Lar33.
pdb|3DCD|B Chain B, X-Ray Structure Of The Galactose Mutarotase Related Enzyme
Q5fkd7 From Lactobacillus Acidophilus At The Resolution
1.9a. Northeast Structural Genomics Consortium Target
Lar33
Length = 307
Score = 34.3 bits (77), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 20/93 (21%)
Query: 23 SSAESFWKPPKAIRG-GIPVCFPQFGNLG-----------LLEQHGFARNRFWSLDEDAS 70
+ E W+ I G PV FP G L L QHGFARN + ++
Sbjct: 29 TDEEFXWQANPEIWGRHAPVLFPIVGRLKNDEYTYKGKTYHLGQHGFARNADFEVEN--- 85
Query: 71 PLPPANNQSTVDLILKSTEEDIKAWPRGFELRL 103
+ + ++ +LK EE K +P FE R+
Sbjct: 86 -----HTKESITFLLKDNEETRKVYPFKFEFRV 113
>pdb|2BV9|A Chain A, How Family 26 Glycoside Hydrolases Orchestrate Catalysis
On Different Polysaccharides. Structure And Activity Of
A Clostridium Thermocellum Lichenase, Ctlic26a
Length = 290
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 19/46 (41%)
Query: 210 VVWNPWDKKAKALPDMGVDGYKTMLCVDSAAIENPIVLKPFEEWRG 255
+ W PW+ + + D Y T + D A I L+P E G
Sbjct: 67 ITWEPWEYNTVDIKNGKADAYITRMAQDMKAYGKEIWLRPLHEANG 112
>pdb|2BVD|A Chain A, How Family 26 Glycoside Hydrolases Orchestrate Catalysis
On Different Polysaccharides. Structure And Activity Of
A Clostridium Thermocellum Lichenase, Ctlic26a
Length = 283
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 19/46 (41%)
Query: 210 VVWNPWDKKAKALPDMGVDGYKTMLCVDSAAIENPIVLKPFEEWRG 255
+ W PW+ + + D Y T + D A I L+P E G
Sbjct: 67 ITWEPWEYNTVDIKNGKADAYITRMAQDMKAYGKEIWLRPLHEANG 112
>pdb|2V3G|A Chain A, Structure Of A Family 26 Lichenase In Complex With
Noeuromycin
Length = 283
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 19/46 (41%)
Query: 210 VVWNPWDKKAKALPDMGVDGYKTMLCVDSAAIENPIVLKPFEEWRG 255
+ W PW+ + + D Y T + D A I L+P E G
Sbjct: 67 ITWEPWEYNTVDIKNGKADAYITRMAQDMKAYGKEIWLRPLHEANG 112
>pdb|2CIP|A Chain A, Structure Of The Michaelis Complex Of A Family 26
Lichenase
Length = 282
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 19/46 (41%)
Query: 210 VVWNPWDKKAKALPDMGVDGYKTMLCVDSAAIENPIVLKPFEEWRG 255
+ W PW+ + + D Y T + D A I L+P E G
Sbjct: 67 ITWEPWEYNTVDIKNGKADAYITRMAQDMKAYGKEIWLRPLHEANG 112
>pdb|2VI0|A Chain A, Lichenase Ctlic26 In Complex With A Thio-Oligosaccharide
Length = 282
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 19/46 (41%)
Query: 210 VVWNPWDKKAKALPDMGVDGYKTMLCVDSAAIENPIVLKPFEEWRG 255
+ W PW+ + + D Y T + D A I L+P E G
Sbjct: 67 ITWEPWEYNTVDIKNGKADAYITRMAQDMKAYGKEIWLRPLHEANG 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,808,845
Number of Sequences: 62578
Number of extensions: 363876
Number of successful extensions: 846
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 820
Number of HSP's gapped (non-prelim): 17
length of query: 281
length of database: 14,973,337
effective HSP length: 98
effective length of query: 183
effective length of database: 8,840,693
effective search space: 1617846819
effective search space used: 1617846819
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)