BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023497
(281 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q40784|AAPC_CENCI Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris PE=2
SV=1
Length = 329
Score = 346 bits (888), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 169/261 (64%), Positives = 201/261 (77%), Gaps = 6/261 (2%)
Query: 24 SAESFWKPPKAIRGGIPVCFPQFGNLGLLEQHGFARNRFWSLDEDASPLP--PANNQSTV 81
S+++ +KPPKAIRGGIP+C PQFG G LEQHGFARNRFWS+D D PLP PA ++ V
Sbjct: 70 SSKAIFKPPKAIRGGIPICLPQFGTHGNLEQHGFARNRFWSIDNDPPPLPVNPAI-KAFV 128
Query: 82 DLILKSTEEDIKAWPRGFELRLRISISP-GKLTLIPRVRNV--DNKAFSFMFALRNYLSV 138
DLIL+ EED+K WP FE RLR+++ P G L+L R+RN D + FS+ FA Y V
Sbjct: 129 DLILRPAEEDLKIWPHSFEFRLRVALGPSGDLSLTSRIRNTNTDGRPFSYTFAYHTYFFV 188
Query: 139 SDISEVRVEGLETLDYFDYLMNKERFTEQADAITFDGEIDRVYLSTPTKIAIIDHEKKRT 198
SDISEVRVEGLET+DY D L KERFTEQ DAI F+ E+D+VYL+ P+KIAIIDHEKK+T
Sbjct: 189 SDISEVRVEGLETMDYLDNLKAKERFTEQGDAIVFESEVDKVYLAAPSKIAIIDHEKKKT 248
Query: 199 FELRKDGMPDSVVWNPWDKKAKALPDMGVDGYKTMLCVDSAAIENPIVLKPFEEWRGRQE 258
F + K+G+PD+VVWNPWDKKAKA+ D G YK MLCV+ AA+E PI LKP EEWRGR
Sbjct: 249 FVVTKEGLPDAVVWNPWDKKAKAMQDFGDAEYKNMLCVEPAAVEKPITLKPGEEWRGRIA 308
Query: 259 LSTVSSSYCSGQLDPRRVLHG 279
LS V SSYCSGQLDP +VLHG
Sbjct: 309 LSAVPSSYCSGQLDPLKVLHG 329
>sp|Q03161|YMY9_YEAST Glucose-6-phosphate 1-epimerase OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YMR099C PE=1 SV=1
Length = 297
Score = 115 bits (289), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 117/251 (46%), Gaps = 20/251 (7%)
Query: 33 KAIRGGIPVCFPQFG------NLGLLEQHGFARNRFWSLDEDASPLPPANNQSTVDLILK 86
K +RGGIP+ FP FG +L L QHG ARN W PP TV LK
Sbjct: 54 KPVRGGIPLVFPVFGKNSTDEHLSKLPQHGLARNSTWEFLGQTKENPP-----TVQFGLK 108
Query: 87 ---STEEDIKAWPRGFELRLRISISPGKLTLIPRVRNVDN-KAFSFMFALRNYLSVSDIS 142
+ E K WP + L L + + L V N + K F + Y + DI
Sbjct: 109 PEIANPELTKLWPMDYLLILTVELGSDYLKTAIEVENTSSSKELKFNWLFHTYFRIEDIE 168
Query: 143 EVRVEGLETLDYFDYLMNKERFTEQADAITFDGEIDRVY--LSTPTKIAIIDHEKKRTFE 200
V L + +D L+ KE + ++ +TF+ E D +Y +S I I+D + +
Sbjct: 169 GTMVSNLAGMKLYDQLL-KESYVDKHPVVTFNQETDVIYQNVSAERAIQIVD-KGVQIHT 226
Query: 201 LRKDGMPDSVVWNPWDKKAKALPDMG-VDGYKTMLCVDSAAIENPIVLKPFEEWRGRQEL 259
L++ +PD+VVWNPW +K++ + D GY+ M+C++ + + I L P ++W Q L
Sbjct: 227 LKRYNLPDTVVWNPWIEKSQGMADFEPKTGYQQMICIEPGHVHDFISLAPGKKWNAYQLL 286
Query: 260 STVSSSYCSGQ 270
Y + Q
Sbjct: 287 CKEELKYQAIQ 297
>sp|P39173|YEAD_ECOLI Putative glucose-6-phosphate 1-epimerase OS=Escherichia coli
(strain K12) GN=yeaD PE=1 SV=2
Length = 294
Score = 92.0 bits (227), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 97/212 (45%), Gaps = 20/212 (9%)
Query: 34 AIRGGIPVCFPQFGNLGL--LEQHGFARNRFWSL---DEDASPLPPANNQSTVDLILKST 88
AIRGG+PVC+P FG L HGFARN W+L EDA + + L +
Sbjct: 72 AIRGGVPVCWPWFGPAAQQGLPAHGFARNLPWTLKSHHEDADGV-------ALTFELTQS 124
Query: 89 EEDIKAWPRGFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALRNYLSVSDISEVRVEG 148
EE K WP F L + GK I + + F AL Y +V DI++V V G
Sbjct: 125 EETKKFWPHDFTLLAHFRV--GKTCEIDLESHGE---FETTSALHTYFNVGDIAKVSVSG 179
Query: 149 LETLDYFDYLMNKERFTEQADAI-TFDGEIDRVYLSTPTKIAIIDHEKKRTFELRKDGMP 207
L D F +N + D I TF DRVYL+ I D R +
Sbjct: 180 LG--DRFIDKVNDAKENVLTDGIQTFPDRTDRVYLNPQDCSVINDEALNRIIAVGHQHHL 237
Query: 208 DSVVWNPWDKKAKALPDMGVDGYKTMLCVDSA 239
+ V WNP + ++ DM DGYKT +CV++A
Sbjct: 238 NVVGWNPGPALSISMGDMPDDGYKTFVCVETA 269
>sp|P44160|Y1317_HAEIN Putative glucose-6-phosphate 1-epimerase OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1317
PE=3 SV=1
Length = 271
Score = 78.2 bits (191), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 98/226 (43%), Gaps = 34/226 (15%)
Query: 23 SSAESFWKPPKAIRGGIPVCFPQFGNLGLLEQHGFARNRFWSLDEDASPLPPANNQSTVD 82
S E F K AIRGG+P+C+P FG + HG AR R W L + +
Sbjct: 59 SEVEPF-KNGNAIRGGVPICYPWFGGVKQ-PAHGTARIRLWQLSHYYISVHKVRLE---- 112
Query: 83 LILKSTEEDIKAWPRGFELRLRISISPGKLTLI----PRVRNVDNKAFSFMFALRNYLSV 138
FEL ++I K++++ + S AL Y ++
Sbjct: 113 ----------------FELFSDLNIIEAKVSMVFTDKCHLTFTHYGEESAQAALHTYFNI 156
Query: 139 SDISEVRVEGL-ETLDYFDYLMNKERFTEQADAITFDGEIDRVYLSTPTKIAIIDHEKKR 197
DI++V V+GL ET F+ L ++ I+ + +D +Y + + I+D R
Sbjct: 157 GDINQVEVQGLPETC--FNSLNQQQENVPSPRHISEN--VDCIYSAENMQNQILDKSFNR 212
Query: 198 TFELRKDGMPDSVVWNPWDKKAKALPDMGVDGYKTMLCVDSAAIEN 243
T L V+WNPW KK + + GY+ MLC+++A I +
Sbjct: 213 TIALHHHNASQFVLWNPWHKKTSGMSE---TGYQKMLCLETARIHH 255
>sp|P23496|LACXP_LACLL Protein LacX, plasmid OS=Lactococcus lactis subsp. lactis GN=lacX
PE=2 SV=1
Length = 299
Score = 36.2 bits (82), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 38/139 (27%)
Query: 3 LNIVHDKDGLPRIILTEPTGSSAESFWKP-PKAIRGGIPVCFPQFGNL------------ 49
L + DKDGL E W+ P+ G P+ FP G+L
Sbjct: 21 LTSIKDKDGL-------------EYLWQADPEYWNGQAPILFPICGSLRNDWAIYRPQER 67
Query: 50 ----GLLEQHGFARNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRI 105
GL+ +HGF R ++L+E N+++V +K E + + FELR+
Sbjct: 68 PFFTGLIRRHGFVRKEEFTLEE--------VNENSVTFSIKPNAEMLDNYLYQFELRVVY 119
Query: 106 SISPGKLTLIPRVRNVDNK 124
+++ + +V N++ +
Sbjct: 120 TLNGKSIRTEFQVTNLETE 138
>sp|P42096|LACXC_LACLL Protein LacX, chromosomal OS=Lactococcus lactis subsp. lactis
GN=lacX PE=4 SV=1
Length = 299
Score = 36.2 bits (82), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 38/139 (27%)
Query: 3 LNIVHDKDGLPRIILTEPTGSSAESFWKP-PKAIRGGIPVCFPQFGNL------------ 49
L + DKDGL E W+ P+ G P+ FP G+L
Sbjct: 21 LTSIKDKDGL-------------EYLWQADPEYWNGQAPILFPICGSLRNDWAIYRPQDR 67
Query: 50 ----GLLEQHGFARNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRI 105
GL+ +HGF R ++L+E N+++V +K E + + FELR+
Sbjct: 68 PFFTGLIRRHGFVRKEEFTLEE--------VNENSVTFSIKPNAEMLDNYLYQFELRVVY 119
Query: 106 SISPGKLTLIPRVRNVDNK 124
+++ + +V N++ +
Sbjct: 120 TLNGKSIRTEFQVTNLETE 138
>sp|P38811|TRA1_YEAST Transcription-associated protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TRA1 PE=1 SV=1
Length = 3744
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 11 GLPRIILTEPTGSSAESFWKPPKAIRGGIPVCFPQ-FGNLGLLEQHGFARNRFWSLDEDA 69
GL RII ++ S E F++ PKAI FPQ + ++ E++GF R+ L +
Sbjct: 2532 GLCRIISSDFIDSLIEIFYQDPKAIHRAWVTLFPQVYKSIPKNEKYGFVRSIITLLSKPY 2591
Query: 70 SPLPPANNQSTVDLILKS 87
++ + ++++L S
Sbjct: 2592 HTRQISSRTNVINMLLDS 2609
>sp|O19111|KPCZ_RABIT Protein kinase C zeta type OS=Oryctolagus cuniculus GN=PRKCZ PE=2
SV=1
Length = 591
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 13/118 (11%)
Query: 12 LPRIILTEPTGSSAESFWKPPKAIRGGIPVCFPQFGNLGLLEQHGFARNRFWSLDEDASP 71
+PR + + + K PK G C PQ G ++ H F R+ W L E
Sbjct: 476 IPRFLSVKASHVLKGFLNKDPKERLG----CRPQTG-FSDIKSHAFFRSIDWDLLEKKQA 530
Query: 72 LPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISPGKLTLIPRVRNVDNKAFSFM 129
LPP Q T D L +++ + P + ++P +I R+ + + F ++
Sbjct: 531 LPPFQPQITDDYGLDNSDTQFTSEP--------VQLTPDDEDVIKRIDQSEFEGFEYI 580
>sp|A1SRV2|MEND_PSYIN 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Psychromonas ingrahamii (strain 37) GN=menD
PE=3 SV=1
Length = 581
Score = 32.0 bits (71), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 112 LTLIPRVRNVDN-KAFSFMFALRNYLSVSDISEVRVEGLETLDYFDYLMNKERFTE---Q 167
L + RV ++ +A + AL NY ++D+ L Y+D L+ ++FTE Q
Sbjct: 239 LVIAGRVTGINQAQAIAEFAALNNYPLLADLQSALTGNANNLHYYDLLLVNKQFTENLQQ 298
Query: 168 ADAIT-FDGEI 177
AD I F G++
Sbjct: 299 ADIIVQFGGKL 309
>sp|Q28115|GFAP_BOVIN Glial fibrillary acidic protein OS=Bos taurus GN=GFAP PE=2 SV=2
Length = 428
Score = 31.2 bits (69), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 126 FSFMFALRNYLSVSDISEVRVEGLETLDYFDYLMNKERFTEQADAITFDGEIDRVYLSTP 185
FS AL + + SE R E +E D F + K RF EQ + E++++ P
Sbjct: 48 FSLAGALNSGFKETRASE-RAEMMELNDRFASYIEKVRFLEQQNK-ALAAELNQLRAKEP 105
Query: 186 TKIAIIDHEKKRTFELRKDGM 206
TK+A + + R LR D +
Sbjct: 106 TKLADVYQAELRELRLRLDQL 126
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,413,487
Number of Sequences: 539616
Number of extensions: 4663143
Number of successful extensions: 9772
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 9757
Number of HSP's gapped (non-prelim): 17
length of query: 281
length of database: 191,569,459
effective HSP length: 116
effective length of query: 165
effective length of database: 128,974,003
effective search space: 21280710495
effective search space used: 21280710495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)