Query 023497
Match_columns 281
No_of_seqs 165 out of 1402
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 04:29:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023497.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023497hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1594 Uncharacterized enzyme 100.0 1.1E-71 2.5E-76 473.7 27.7 269 1-270 12-305 (305)
2 cd09020 D-hex-6-P-epi_like D-h 100.0 1E-59 2.2E-64 420.2 26.9 244 10-260 16-269 (269)
3 COG0676 Uncharacterized enzyme 100.0 4.8E-52 1E-56 359.6 20.3 238 9-263 21-286 (287)
4 cd09025 Aldose_epim_Slr1438 Al 100.0 8.9E-44 1.9E-48 317.9 23.6 208 29-260 44-271 (271)
5 cd09021 Aldose_epim_Ec_YphB al 100.0 8.5E-38 1.8E-42 279.6 22.6 224 9-260 7-273 (273)
6 cd09024 Aldose_epim_lacX Aldos 100.0 1.3E-36 2.8E-41 273.9 25.4 230 9-261 14-288 (288)
7 cd01081 Aldose_epim aldose 1-e 100.0 1.4E-32 3.1E-37 245.7 23.5 225 10-257 8-283 (284)
8 PF01263 Aldose_epim: Aldose 1 100.0 4E-32 8.6E-37 245.3 16.9 213 38-260 70-300 (300)
9 cd09022 Aldose_epim_Ec_YihR Al 100.0 1.2E-30 2.6E-35 234.7 23.4 227 9-259 7-284 (284)
10 PRK15172 putative aldose-1-epi 100.0 3.3E-30 7.2E-35 233.4 21.9 202 37-263 54-299 (300)
11 COG2017 GalM Galactose mutarot 100.0 5.2E-27 1.1E-31 213.1 22.7 206 34-263 56-307 (308)
12 cd09019 galactose_mutarotase_l 100.0 1.9E-26 4E-31 211.3 23.8 236 10-261 17-326 (326)
13 PLN00194 aldose 1-epimerase; P 99.9 5.8E-24 1.3E-28 195.4 24.5 212 40-262 64-336 (337)
14 TIGR02636 galM_Leloir galactos 99.9 1.1E-22 2.4E-27 186.9 20.0 207 40-261 59-334 (335)
15 PRK11055 galM galactose-1-epim 99.9 7.1E-20 1.5E-24 168.5 24.9 208 40-262 65-340 (342)
16 PTZ00485 aldolase 1-epimerase; 99.8 4.9E-18 1.1E-22 157.3 21.8 200 54-263 106-370 (376)
17 cd09023 Aldose_epim_Ec_c4013 A 99.8 2.5E-18 5.5E-23 154.7 13.0 197 43-257 57-283 (284)
18 KOG1604 Predicted mutarotase [ 99.5 5.5E-12 1.2E-16 112.5 18.0 194 54-263 113-351 (353)
19 cd09269 deoxyribose_mutarotase 99.2 3E-10 6.5E-15 102.4 14.7 188 51-259 61-292 (293)
20 PF14486 DUF4432: Domain of un 98.8 4.5E-08 9.7E-13 88.8 12.1 188 52-261 86-302 (302)
21 PF14315 DUF4380: Domain of un 88.6 17 0.00038 32.4 17.1 47 78-130 96-144 (274)
22 PF09095 DUF1926: Domain of un 86.6 12 0.00027 33.5 11.5 154 60-259 123-278 (278)
23 COG0832 UreB Urea amidohydrola 84.4 1.3 2.8E-05 33.2 3.3 33 103-137 11-43 (106)
24 PF00699 Urease_beta: Urease b 82.9 1.5 3.3E-05 32.9 3.2 31 105-137 12-42 (100)
25 TIGR00192 urease_beta urease, 82.8 1.7 3.8E-05 32.6 3.5 31 105-137 13-43 (101)
26 cd00407 Urease_beta Urease bet 82.5 1.8 3.8E-05 32.6 3.4 32 104-137 12-43 (101)
27 PRK13203 ureB urease subunit b 82.4 1.8 3.9E-05 32.6 3.4 31 105-137 13-43 (102)
28 PRK13202 ureB urease subunit b 78.7 3 6.4E-05 31.5 3.5 31 105-137 13-44 (104)
29 PRK13201 ureB urease subunit b 78.1 2.9 6.2E-05 33.0 3.4 31 105-137 13-43 (136)
30 PRK13205 ureB urease subunit b 77.1 3.1 6.8E-05 33.6 3.4 31 105-137 13-43 (162)
31 PRK13198 ureB urease subunit b 76.8 3.2 7E-05 33.5 3.4 32 104-137 40-71 (158)
32 PRK13204 ureB urease subunit b 76.8 3.2 7E-05 33.5 3.4 32 104-137 35-66 (159)
33 PRK13192 bifunctional urease s 66.7 6.6 0.00014 33.4 3.3 43 93-137 109-152 (208)
34 PRK13986 urease subunit alpha; 64.0 7.5 0.00016 33.4 3.1 42 94-137 106-148 (225)
35 PF04744 Monooxygenase_B: Mono 60.3 11 0.00025 35.0 3.8 29 101-129 254-282 (381)
36 PF05506 DUF756: Domain of unk 57.2 25 0.00054 25.5 4.6 39 96-136 6-44 (89)
37 PF14059 DUF4251: Domain of un 53.5 1.1E+02 0.0024 24.2 8.4 79 35-129 48-134 (138)
38 PF12690 BsuPI: Intracellular 52.9 19 0.0004 26.0 3.2 20 111-130 1-20 (82)
39 TIGR03079 CH4_NH3mon_ox_B meth 51.8 19 0.00041 33.5 3.8 28 102-129 274-301 (399)
40 cd03171 SORL_Dfx_classI Supero 48.8 29 0.00063 24.9 3.6 43 225-267 26-71 (78)
41 cd06535 CIDE_N_CAD CIDE_N doma 46.1 6.8 0.00015 28.1 0.0 21 233-255 57-77 (77)
42 COG2835 Uncharacterized conser 38.6 13 0.00028 25.3 0.4 14 33-46 36-49 (60)
43 TIGR03593 yidC_nterm membrane 38.5 1.3E+02 0.0028 27.8 7.3 59 59-127 143-203 (366)
44 PRK01318 membrane protein inse 37.6 1.5E+02 0.0033 29.2 7.9 61 60-128 108-170 (521)
45 PF14100 PmoA: Methane oxygena 37.2 3E+02 0.0065 24.5 17.6 40 232-276 224-264 (271)
46 cd06536 CIDE_N_ICAD CIDE_N dom 36.1 13 0.00029 26.8 0.2 20 233-254 60-79 (80)
47 PF07718 Coatamer_beta_C: Coat 34.4 92 0.002 25.0 4.8 73 169-265 47-127 (140)
48 cd01615 CIDE_N CIDE_N domain, 33.6 16 0.00035 26.2 0.4 20 233-254 58-77 (78)
49 PF14849 YidC_periplas: YidC p 33.3 1.8E+02 0.0038 25.4 7.1 62 59-128 68-131 (270)
50 cd06539 CIDE_N_A CIDE_N domain 31.2 18 0.00039 26.0 0.2 20 233-254 58-77 (78)
51 cd06537 CIDE_N_B CIDE_N domain 30.0 19 0.00042 26.0 0.3 21 233-255 57-77 (81)
52 cd06538 CIDE_N_FSP27 CIDE_N do 28.9 20 0.00043 25.8 0.2 20 233-254 57-76 (79)
53 PF00942 CBM_3: Cellulose bind 28.4 1.3E+02 0.0029 21.5 4.5 33 110-142 13-46 (86)
54 smart00266 CAD Domains present 28.3 21 0.00046 25.3 0.2 19 233-253 56-74 (74)
55 PF14796 AP3B1_C: Clathrin-ada 26.7 2.2E+02 0.0047 23.0 5.8 21 243-263 122-142 (145)
56 PF06030 DUF916: Bacterial pro 26.6 1.7E+02 0.0038 22.6 5.1 28 110-137 27-54 (121)
57 PLN02303 urease 26.3 65 0.0014 33.5 3.3 31 104-136 142-172 (837)
58 PRK11827 hypothetical protein; 26.1 26 0.00056 23.9 0.3 16 33-48 36-51 (60)
59 PF05543 Peptidase_C47: Stapho 23.7 1.1E+02 0.0025 25.5 3.7 39 205-259 134-172 (175)
60 PF02662 FlpD: Methyl-viologen 22.9 31 0.00067 27.0 0.2 21 259-280 29-49 (124)
61 PF10633 NPCBM_assoc: NPCBM-as 22.5 1.1E+02 0.0023 21.3 3.0 31 228-263 32-62 (78)
62 PF13629 T2SS-T3SS_pil_N: Pilu 21.8 2.8E+02 0.006 19.1 5.1 45 170-215 14-60 (72)
63 PF06280 DUF1034: Fn3-like dom 21.6 1.6E+02 0.0034 22.1 4.0 24 110-133 8-31 (112)
64 TIGR01451 B_ant_repeat conserv 21.4 1.3E+02 0.0028 19.5 3.0 18 109-126 11-28 (53)
65 PF14742 GDE_N_bis: N-terminal 21.3 4.9E+02 0.011 21.7 8.2 39 94-133 76-114 (194)
66 PF00345 PapD_N: Pili and flag 21.3 1.8E+02 0.0039 22.0 4.3 28 105-132 9-36 (122)
67 PF07610 DUF1573: Protein of u 20.6 88 0.0019 19.5 2.0 12 116-127 2-13 (45)
68 PF01345 DUF11: Domain of unkn 20.2 1.3E+02 0.0029 20.6 3.1 17 109-125 40-56 (76)
69 PF00207 A2M: Alpha-2-macroglo 20.1 2.2E+02 0.0047 20.5 4.3 35 96-130 55-90 (92)
70 PF14310 Fn3-like: Fibronectin 20.0 1.3E+02 0.0029 20.5 3.1 19 243-261 25-43 (71)
No 1
>KOG1594 consensus Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-71 Score=473.71 Aligned_cols=269 Identities=66% Similarity=1.172 Sum_probs=255.5
Q ss_pred CCeeEecCCCCCcEEEEECCCcceEEE-------------------------EecCCCCCcCCcceEccccCCCCCCccc
Q 023497 1 MPLNIVHDKDGLPRIILTEPTGSSAES-------------------------FWKPPKAIRGGIPVCFPQFGNLGLLEQH 55 (281)
Q Consensus 1 ~~~~~~~~~~~l~~~~l~~~~g~~~~v-------------------------~~~~~~~irgGiPv~fP~~G~~~~~p~H 55 (281)
|++...++.+|+..|+|++|.|++|+| .|++.+|||||||+|||+||..+.+++|
T Consensus 12 ~~~~~~k~~~g~~~ivL~~p~g~taev~L~Gg~V~SWK~~~geElLf~S~kA~f~ppKpIRGGIP~~FPQFG~~g~l~qH 91 (305)
T KOG1594|consen 12 MPVELAKGRNGLDKIVLTDPRGSTAEVYLYGGQVVSWKNENGEELLFVSTKAIFKPPKPIRGGIPICFPQFGNFGSLPQH 91 (305)
T ss_pred ccceeecccCCCceEEEeCCCCCeEEEEEeccEEEEeecCCCceeEEechhhhcCCCCcccCCcceEeeccCCCCccccc
Confidence 678889999999999999999999998 6799999999999999999999999999
Q ss_pred eeeeccCeEEeecCCCCCCCCCccEEEEEecCChhhhccCCcceEEEEEEEEeCCeeEEEEEEEeCCCCceeeeecCcce
Q 023497 56 GFARNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALRNY 135 (281)
Q Consensus 56 GfaR~~~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~~~L~~~~L~~~l~v~N~g~~~~~f~~g~HpY 135 (281)
||||++.|+++....+++ ......|.|.|.+++++++.|||+|++++++.|.++.|+++..|+|++++||.|++++|+|
T Consensus 92 GFaRn~~W~v~~~p~~lp-~~~~a~Vdl~Lk~~~~~~kiWp~~Fe~~lrv~l~~g~Lt~~~rV~Ntd~KpFsF~~alHtY 170 (305)
T KOG1594|consen 92 GFARNRFWEVENNPPPLP-SLGKATVDLILKSSEDDLKIWPHSFELRLRVSLGDGELTLTSRVRNTDSKPFSFSFALHTY 170 (305)
T ss_pred ccccceeeEeccCCCCCC-cCCceeEEEEecCChhhhhhCCcceEEEEEEEEcCCceEEEEEeecCCCCceEEEeEeeee
Confidence 999999999997754333 2245789999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCeeEEEcCCCCccccccCccccccccCceEEeccCcceEEcCCCCeEEEEeCCCCcEEEEEecCCCcEEEeCCc
Q 023497 136 LSVSDISEVRVEGLETLDYFDYLMNKERFTEQADAITFDGEIDRVYLSTPTKIAIIDHEKKRTFELRKDGMPDSVVWNPW 215 (281)
Q Consensus 136 F~v~~~~~~~v~gl~~~~~~d~l~~~~~~~~~~~~l~~~~~~D~vy~~~~~~~~l~~~~~~~~i~i~~~~~~~~vvwnP~ 215 (281)
|+++|++.++|+||+++.|+|++...+.++++.++++|.+++||||+++|.++.|.|..++|+|.|.+.|+|++||||||
T Consensus 171 f~vsdisevrveGL~tldylD~~~~~~~~tE~~davTF~~e~DrvYl~tp~e~aI~dh~~krti~l~k~g~pDaVVWNPW 250 (305)
T KOG1594|consen 171 FRVSDISEVRVEGLETLDYLDNLKNRERFTEQRDAVTFNSEVDRVYLNTPTELAIFDHEKKRTIVLKKEGLPDAVVWNPW 250 (305)
T ss_pred EeecccceEEEeccccccccccccchhhccccCceEeeccceeeEEecCCceEEEEEeccccEEEEeccCCCceEEeChh
Confidence 99999999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCCcceEEecccccCCCeEeCCCCEEEEEEEEEEEecccccCC
Q 023497 216 DKKAKALPDMGVDGYKTMLCVDSAAIENPIVLKPFEEWRGRQELSTVSSSYCSGQ 270 (281)
Q Consensus 216 ~~~~~~~~d~~~~~~~~~vCvEp~~~~~~~~L~pge~~~~~~~i~~~~~~~~~~~ 270 (281)
.++++.|+||++++|++|+|||++.+..+++|+||++|++++.+++.+.+|||||
T Consensus 251 ~kksk~maD~gde~Y~~mlCVe~a~v~~pI~L~PG~eW~g~q~Lsiv~s~~~s~q 305 (305)
T KOG1594|consen 251 DKKSKTMADFGDEDYKHMLCVESAAVESPITLKPGEEWKGRQLLSIVPSSYCSGQ 305 (305)
T ss_pred HhhhhhhhhccccccceeEEecccccCCceeecCCccceeEEEEEEeecccccCC
Confidence 9999999999999999999999999999999999999999999999999999997
No 2
>cd09020 D-hex-6-P-epi_like D-hexose-6-phosphate epimerase-like. D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P.
Probab=100.00 E-value=1e-59 Score=420.16 Aligned_cols=244 Identities=43% Similarity=0.739 Sum_probs=216.0
Q ss_pred CCCcEEEEECCCcceEEE-------EecCCCCCcCCcceEccccCCCC---CCccceeeeccCeEEeecCCCCCCCCCcc
Q 023497 10 DGLPRIILTEPTGSSAES-------FWKPPKAIRGGIPVCFPQFGNLG---LLEQHGFARNRFWSLDEDASPLPPANNQS 79 (281)
Q Consensus 10 ~~l~~~~l~~~~g~~~~v-------~~~~~~~irgGiPv~fP~~G~~~---~~p~HGfaR~~~W~v~~~~~~~~~~~~~~ 79 (281)
.|..++.++.+.|. ++ .|+++++||||+||||||||++. .+|+|||||++.|+|.+... +++..
T Consensus 16 ~Ga~l~s~~~~~~~--~~L~~s~~~~~~~~~~irgGiPvlfP~~g~~~~~~~~~~HGfaR~~~W~l~~~~~----~~~~~ 89 (269)
T cd09020 16 QGAQVLSWKPKGGQ--DLLWLSPQAPFDGGKAIRGGIPVCWPWFGPHGPNADLPAHGFARTRLWELLEVSE----DEDGV 89 (269)
T ss_pred CCcEEEEEeCCCCc--eeEEECCccccCCCCcccCCCeEeeeccCCCCCCCCCCcceeeecCceEEeeeec----CCCce
Confidence 46666666665432 44 45888999999999999999975 78999999999999987642 23457
Q ss_pred EEEEEecCChhhhccCCcceEEEEEEEEeCCeeEEEEEEEeCCCCceeeeecCcceeecCCCCeeEEEcCCCCccccccC
Q 023497 80 TVDLILKSTEEDIKAWPRGFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALRNYLSVSDISEVRVEGLETLDYFDYLM 159 (281)
Q Consensus 80 ~v~l~l~~~~~~~~~~P~~f~l~~~~~L~~~~L~~~l~v~N~g~~~~~f~~g~HpYF~v~~~~~~~v~gl~~~~~~d~l~ 159 (281)
.++|.+.+++.+++.|||+|+++++|+|.+++|+++++|+|+|+++|||++|+||||+++++++++|.|+.+..|+|++.
T Consensus 90 ~l~l~l~~~~~~~~~~P~~f~l~~~~~L~~~~L~~~l~v~N~g~~~~p~~~g~HpYf~v~d~~~~~v~gl~~~~y~d~~~ 169 (269)
T cd09020 90 TVSLELDDTDETRAIWPHAFELRLTVTLGFDTLELELTVTNTGDKPFSFTAALHTYFRVSDIEQVRVEGLEGATYLDKLT 169 (269)
T ss_pred EEEEEeCCChhhhhcCCCceEEEEEEEEcCCcEEEEEEEECCCCCCeEehhccCeeEecCCccccEEeCCCCCceEEcCC
Confidence 88999988888999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred ccccccccCceEEeccCcceEEcCCCCeEEEEeCCCCcEEEEEecCCCcEEEeCCcccccccCCCCCCCCCcceEEeccc
Q 023497 160 NKERFTEQADAITFDGEIDRVYLSTPTKIAIIDHEKKRTFELRKDGMPDSVVWNPWDKKAKALPDMGVDGYKTMLCVDSA 239 (281)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~D~vy~~~~~~~~l~~~~~~~~i~i~~~~~~~~vvwnP~~~~~~~~~d~~~~~~~~~vCvEp~ 239 (281)
..... .+.+.+.|++++||||.+.++.++|.|...+++|+|++++++++||||||.+++++|+||++++|++||||||+
T Consensus 170 ~~~~~-~~~~~~~~~~~~Drvy~~~~~~~~i~d~~~~~~i~i~~~~~~~~VVWNP~~~~~~~~~d~~~~~~~~fvCvEp~ 248 (269)
T cd09020 170 DQREK-VQGGAVTFDGEVDRVYLNTPAPLTIDDPAWGRRIRIEKSGSPSAVVWNPWIEKAARMADFPDDGYRRMVCVEAA 248 (269)
T ss_pred Ccccc-ccCCceEECCccceEEeCCCCCEEEEcCCCCcEEEEEecCCCCEEEeCcchhhccccccCCccccceEEEECee
Confidence 43322 23467899999999999988889999998899999999999999999999999999999999999999999999
Q ss_pred ccCCCeEeCCCCEEEEEEEEE
Q 023497 240 AIENPIVLKPFEEWRGRQELS 260 (281)
Q Consensus 240 ~~~~~~~L~pge~~~~~~~i~ 260 (281)
++.+.+.|+|||+|+++++|+
T Consensus 249 ~~~~~~~L~pG~~~~~~~~i~ 269 (269)
T cd09020 249 NVADPVTLAPGESHTLSQTIS 269 (269)
T ss_pred ecCCCEEECCCCCEEEEEEEC
Confidence 988999999999999999984
No 3
>COG0676 Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.8e-52 Score=359.61 Aligned_cols=238 Identities=38% Similarity=0.588 Sum_probs=201.4
Q ss_pred CCCCcEEEEECCCcceEEE-------------------------EecCCCCCcCCcceEccccCCCCC--Cccceeeecc
Q 023497 9 KDGLPRIILTEPTGSSAES-------------------------FWKPPKAIRGGIPVCFPQFGNLGL--LEQHGFARNR 61 (281)
Q Consensus 9 ~~~l~~~~l~~~~g~~~~v-------------------------~~~~~~~irgGiPv~fP~~G~~~~--~p~HGfaR~~ 61 (281)
.+.++.+.++|+.| +|.| .|++++||||||||||||||++.. +|+|||||++
T Consensus 21 ~~~~~~~~~~h~~~-~a~islqGAqLLs~qP~ge~evLWLS~~~p~~~g~aIRGGIPICwPWFG~~~~~~~PaHG~AR~~ 99 (287)
T COG0676 21 LDQLPLIVVDHPLG-SAAISLQGAQLLSWQPKGEEEVLWLSSNAPFKGGAAIRGGIPICWPWFGPLAQQGLPAHGFARNR 99 (287)
T ss_pred eeccCceEeecccc-eeEEecCCceEEEecCCCCCceEEecccCccCCCCcccCCCcEEEeccCccCCCCCCccchhhcC
Confidence 56678888999965 4666 458889999999999999999854 7999999999
Q ss_pred CeEEeecCCCCCCCCCccEEEEEecCChhhhccCCcceEEEEEEEEeCCeeEEEEEEEeCCCCceeeeecCcceeecCCC
Q 023497 62 FWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALRNYLSVSDI 141 (281)
Q Consensus 62 ~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~~~L~~~~L~~~l~v~N~g~~~~~f~~g~HpYF~v~~~ 141 (281)
+|++.+..+ +++...++|.|..+++ |+.|.++++++++ ++|+++++..|+.+ |+.||||||+|+|+
T Consensus 100 ~W~l~~~~~----~~~~v~v~f~L~~~~~-----p~~~~lr~~~~~g-~~le~~l~~~~~~s----~~~AlHtYF~VgDi 165 (287)
T COG0676 100 PWKLLEHDE----DEDGVRVTFGLDLEDE-----PHDFTLRLTFRFG-ETLELELESYGEES----FQAALHTYFRVGDI 165 (287)
T ss_pred ceeeeehhc----ccCceEEEEEeCCCcc-----ccceEEEEEeecc-ceEEEEEEecChhH----HHHhhcceEEecch
Confidence 999998753 4456678888876543 9999999999997 67999999988776 99999999999999
Q ss_pred CeeEEEcCCCCccccccCccccccccCceEEeccCcceEEcCCCCeEEEEeCCCCcEEEEEecCCCcEEEeCCccccccc
Q 023497 142 SEVRVEGLETLDYFDYLMNKERFTEQADAITFDGEIDRVYLSTPTKIAIIDHEKKRTFELRKDGMPDSVVWNPWDKKAKA 221 (281)
Q Consensus 142 ~~~~v~gl~~~~~~d~l~~~~~~~~~~~~l~~~~~~D~vy~~~~~~~~l~~~~~~~~i~i~~~~~~~~vvwnP~~~~~~~ 221 (281)
+++.|.||.+..+.+.+.. +....+.+...|.+++||||++.....+|.|+..+|+|+|+..+..++||||||.+++.+
T Consensus 166 ~qv~V~GL~~~~~~~~~~~-~~~v~~~g~~~~~~~~DriY~~~~~~~~I~D~~~~R~I~l~~~~~~~~VvWNP~~~~s~~ 244 (287)
T COG0676 166 EQVEVSGLGGVCIDKVLNA-EEEVTQHGIVTFPGETDRIYLNPEPCSVIVDPALNRIITLEHQGHSSTVVWNPGHAKSSS 244 (287)
T ss_pred hheEeccCCceehhhhhhc-eeeccCCCceeeCCCccEEEEcCCCceEEecCcceEEEEEEecCCCCeEEECCCcccccc
Confidence 9999999988755544433 222223456889999999999988889999998899999999999999999999999999
Q ss_pred CCCCCCCCCcceEEeccccc-CCCeEeCCCCEEEEEEEEEEEe
Q 023497 222 LPDMGVDGYKTMLCVDSAAI-ENPIVLKPFEEWRGRQELSTVS 263 (281)
Q Consensus 222 ~~d~~~~~~~~~vCvEp~~~-~~~~~L~pge~~~~~~~i~~~~ 263 (281)
|.||++++|+.||||||+.+ .....++|+ +++..++|++.+
T Consensus 245 M~d~~d~gyq~mlCvEta~~~~~l~~~~~~-~~~l~~~i~~~~ 286 (287)
T COG0676 245 MADMPDDGYQTMLCVETARVGPDLKVGEPG-PVRLALKISVAK 286 (287)
T ss_pred ccccccccceEEEEEeecccCcchhhcCCc-ceeeeeeeeccc
Confidence 99999999999999999987 466677777 888888887654
No 4
>cd09025 Aldose_epim_Slr1438 Aldose 1-epimerase, similar to Synechocystis Slr1438. Proteins similar to Synechocystis Slr1438 are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=8.9e-44 Score=317.91 Aligned_cols=208 Identities=26% Similarity=0.454 Sum_probs=174.9
Q ss_pred ecCCCCCcCCcceEccccCCC-----------CCCccceeeeccCeEEeecCCCCCCCCCccEEEEEecCChhhhccCCc
Q 023497 29 WKPPKAIRGGIPVCFPQFGNL-----------GLLEQHGFARNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPR 97 (281)
Q Consensus 29 ~~~~~~irgGiPv~fP~~G~~-----------~~~p~HGfaR~~~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~ 97 (281)
|++++++|||+|+||||+||+ +.+|+|||+|++.|++++.. ++..|+|++.+.++++++|||
T Consensus 44 ~~~~~~~~gG~p~l~P~~gri~~g~~~~~g~~~~lp~HGf~r~~~W~v~~~~-------~~~~v~l~l~~~~~~~~~~P~ 116 (271)
T cd09025 44 ADPAKSVRGGIPILFPICGNLPDDGYPLAGQEYTLKQHGFARDLPWEVELLG-------DGAGLTLTLRDNEATRAVYPF 116 (271)
T ss_pred hccccccCCCCcEEECccCCCCCCeEEECCEEEeccCcccccCCCEEEEecC-------CCcEEEEEEeCCHHHHhhCCc
Confidence 355678999999999999996 26899999999999998752 256799999888878899999
Q ss_pred ceEEEEEEEEeCCeeEEEEEEEeCCCCceeeeecCcceeecCCCCeeEEEcCCCCccccccCccccccccCceEEeccCc
Q 023497 98 GFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALRNYLSVSDISEVRVEGLETLDYFDYLMNKERFTEQADAITFDGEI 177 (281)
Q Consensus 98 ~f~l~~~~~L~~~~L~~~l~v~N~g~~~~~f~~g~HpYF~v~~~~~~~v~gl~~~~~~d~l~~~~~~~~~~~~l~~~~~~ 177 (281)
+|+++++|+|.+++|+++++|+|+++++|||++|+||||++++.++++|.++. ..|+|+..+..... ..+...+.+++
T Consensus 117 ~~~~~~~y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpYF~~~~~~~~~l~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~ 194 (271)
T cd09025 117 DFELELTYRLAGNTLEIAQRVHNLGDQPMPFSFGFHPYFAVPDKAKLSLDLPP-TRCFDQKTDEEANT-PGQFDETEEGV 194 (271)
T ss_pred eEEEEEEEEEeCCEEEEEEEEEECCCCcEEEEEecCceeeCCchhccEEEcCH-HHHhhhccCCccCC-ccccccccccc
Confidence 99999999999999999999999999999999999999999998889998773 66777654332111 12334457789
Q ss_pred ceEEcCCCCeEEEEeCCCCcEEEEEecC-CCcEEEeCCcccccccCCCCCCCCCcceEEeccccc--------CCCeEeC
Q 023497 178 DRVYLSTPTKIAIIDHEKKRTFELRKDG-MPDSVVWNPWDKKAKALPDMGVDGYKTMLCVDSAAI--------ENPIVLK 248 (281)
Q Consensus 178 D~vy~~~~~~~~l~~~~~~~~i~i~~~~-~~~~vvwnP~~~~~~~~~d~~~~~~~~~vCvEp~~~--------~~~~~L~ 248 (281)
|++|...+ .++|.+.+.+++|+|.+++ ++++|||||+ ++.||||||++. .++++|+
T Consensus 195 D~~y~~~~-~~~l~~~~~~~~i~l~~~~~~~~~vvw~p~--------------~~~~vCvEp~t~~~nA~n~~~~~~~L~ 259 (271)
T cd09025 195 DLLFRPLG-PASLTDGARGLKITLDHDEPFSNLVVWTDK--------------GKDFVCLEPWTGPRNALNTGERLLLLP 259 (271)
T ss_pred chhhccCC-ceEEEecCCCEEEEEecCCCcceEEEecCC--------------CCcEEEEecCCCCccccCcCCccEEEC
Confidence 99999876 7889988778999999774 7999999994 578999999852 5889999
Q ss_pred CCCEEEEEEEEE
Q 023497 249 PFEEWRGRQELS 260 (281)
Q Consensus 249 pge~~~~~~~i~ 260 (281)
|||+++++++|.
T Consensus 260 PGe~~~~~~~i~ 271 (271)
T cd09025 260 PGETEEASVRIQ 271 (271)
T ss_pred CCCEEEEEEEEC
Confidence 999999999873
No 5
>cd09021 Aldose_epim_Ec_YphB aldose 1-epimerase, similar to Escherichia coli YphB. Proteins similar to Escherichia coli YphB are uncharacterized members of the aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=8.5e-38 Score=279.56 Aligned_cols=224 Identities=16% Similarity=0.187 Sum_probs=173.5
Q ss_pred CCCCcEEEEECCCcceEEEEecCCCC----CcCCcceEccccCCC-----------CCC---------ccceeeeccCeE
Q 023497 9 KDGLPRIILTEPTGSSAESFWKPPKA----IRGGIPVCFPQFGNL-----------GLL---------EQHGFARNRFWS 64 (281)
Q Consensus 9 ~~~l~~~~l~~~~g~~~~v~~~~~~~----irgGiPv~fP~~G~~-----------~~~---------p~HGfaR~~~W~ 64 (281)
..|..++.|....+ -.+++|+++.. -++|+|+||||.||+ |.+ ++|||||++.|+
T Consensus 7 ~~Ga~l~sl~~~~~-~~~~l~~~~~~~~~~~~~~~p~LfP~~gRi~~~~~~~~g~~y~l~~n~~~~~~~~HG~ar~~~w~ 85 (273)
T cd09021 7 ELGGSIAALTSRGD-PTPLLRPADPDAADALAMACFPLVPFSNRIRGGRFLFAGREVALPPNTADEPHPLHGDGWRRPWQ 85 (273)
T ss_pred CCCceEEEEEeCCC-cceeeecCCccccCcccccCceEeccCCcccCCcEeECCEEEecCCCCCCCccCcccchhcCceE
Confidence 56778888887652 24888877533 378999999999997 233 799999999999
Q ss_pred EeecCCCCCCCCCccEEEEEecCChhhhccCCcceEEEEEEEEeCCeeEEEEEEEeCCCCceeeeecCcceeecCCCCee
Q 023497 65 LDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALRNYLSVSDISEV 144 (281)
Q Consensus 65 v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~~~L~~~~L~~~l~v~N~g~~~~~f~~g~HpYF~v~~~~~~ 144 (281)
|++.. +++|+|++...+.+ |||+|+++++|+|.+++|+++++++|+++++|||++|+||||++++...+
T Consensus 86 v~~~~--------~~~v~l~l~~~~~~---~P~~~~~~~~y~L~~~~L~i~~~~~N~~~~~~~~~~g~H~YF~~~~~~~l 154 (273)
T cd09021 86 VVAAS--------ADSAELQLDHEADD---PPWAYRAEQRFHLAGDGLSITLSVTNRGDRPMPAGLGFHPYFPRTPDTRL 154 (273)
T ss_pred EEecc--------CCeEEEEEecCCCC---CCEeEEEEEEEEEcCCCEEEEEEEEECCCCCceeeeecCccEecCCCCEE
Confidence 98763 35688888765543 49999999999999899999999999999999999999999999987777
Q ss_pred EEEcCCCCccc---cccCcccccccc----CceEE-eccCcceEEcCCCCeEEEEeCCCCcEEEEEecC-CCcEEEeCCc
Q 023497 145 RVEGLETLDYF---DYLMNKERFTEQ----ADAIT-FDGEIDRVYLSTPTKIAIIDHEKKRTFELRKDG-MPDSVVWNPW 215 (281)
Q Consensus 145 ~v~gl~~~~~~---d~l~~~~~~~~~----~~~l~-~~~~~D~vy~~~~~~~~l~~~~~~~~i~i~~~~-~~~~vvwnP~ 215 (281)
+|.+.. .+. |+++.+...... ..... ....+|++|......+.+.++.++++|+|.+++ ++++|||||+
T Consensus 155 ~v~~~~--~~~~d~~~lp~~~~~~~~~~df~~~~~l~~~~~D~~f~~~~~~~~l~~~~~~~~i~v~~~~~~~~~vvwtp~ 232 (273)
T cd09021 155 QADADG--VWLEDEDHLPTGLRPHPPDWDFSQPRPLPDRWIDNCFTGWDGAALIWPPERGLALTIEADAPFSHLVVYRPP 232 (273)
T ss_pred EEecce--EEecCCCcCCCcccCCCcchhhcCCCcCCcccccccccCCCcceEEecCCCCcEEEEecCCCCCEEEEEcCC
Confidence 887642 122 344432211100 01111 234899999876666788888888999999998 9999999996
Q ss_pred ccccccCCCCCCCCCcceEEeccccc----------CCCeEeCCCCEEEEEEEEE
Q 023497 216 DKKAKALPDMGVDGYKTMLCVDSAAI----------ENPIVLKPFEEWRGRQELS 260 (281)
Q Consensus 216 ~~~~~~~~d~~~~~~~~~vCvEp~~~----------~~~~~L~pge~~~~~~~i~ 260 (281)
+++|||||||++ .+.++|+|||+++.+++|+
T Consensus 233 --------------~~~~vCvEP~~~~~da~~~~~~~~~~~L~pge~~~~~~~i~ 273 (273)
T cd09021 233 --------------GEDFFCLEPVSHAPDAHHGPGDPGLRVLAPGESLSLSMRIT 273 (273)
T ss_pred --------------CCCeEEEccccCCCCccCCcCCCCcEEeCCCCcEEEEEEEC
Confidence 378999999963 3568999999999999874
No 6
>cd09024 Aldose_epim_lacX Aldose 1-epimerase, similar to Lactococcus lactis lacX. Proteins similar to Lactococcus lactis lacX are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=1.3e-36 Score=273.91 Aligned_cols=230 Identities=20% Similarity=0.351 Sum_probs=172.3
Q ss_pred CCCCcEEEEECC-CcceEEEEecCCCC-CcCCcceEccccCCC-----------CCCccceeeeccCeEEeecCCCCCCC
Q 023497 9 KDGLPRIILTEP-TGSSAESFWKPPKA-IRGGIPVCFPQFGNL-----------GLLEQHGFARNRFWSLDEDASPLPPA 75 (281)
Q Consensus 9 ~~~l~~~~l~~~-~g~~~~v~~~~~~~-irgGiPv~fP~~G~~-----------~~~p~HGfaR~~~W~v~~~~~~~~~~ 75 (281)
..|..+..+... .| .+++|..+.+ +.|++|+||||+||+ +++++|||+|++.|++.+..
T Consensus 14 ~~Ga~l~s~~~~~~g--~e~l~~~~~~~~~~~~p~l~P~~gri~~g~~~~~g~~~~l~~HGf~r~~~w~v~~~~------ 85 (288)
T cd09024 14 EHGAELTSIKDKKTG--REYLWQGDPAYWGRHAPILFPIVGRLKDDTYTIDGKTYPMPQHGFARDMEFEVVEQS------ 85 (288)
T ss_pred ccCcEEEEEEeCCCC--CEEEeCCChHHcCCCCCEEEeeccCCCCCeEEECCEEeeccCCCCcccCceEEEEcc------
Confidence 456677777766 35 3788877654 677899999999997 36899999999999998763
Q ss_pred CCccEEEEEecCChhhhccCCcceEEEEEEEEeCCeeEEEEEEEeCCCCceeeeecCcceeecCCCC-----eeEE--Ec
Q 023497 76 NNQSTVDLILKSTEEDIKAWPRGFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALRNYLSVSDIS-----EVRV--EG 148 (281)
Q Consensus 76 ~~~~~v~l~l~~~~~~~~~~P~~f~l~~~~~L~~~~L~~~l~v~N~g~~~~~f~~g~HpYF~v~~~~-----~~~v--~g 148 (281)
+.+|+|++.++++++++|||+|+++++|+|.+++|+++++++|+++++|||++|+||||++++.+ ++++ ..
T Consensus 86 --~~~v~l~l~~~~~~~~~~P~~~~~~~~y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpYF~~~~~~~~~~~~~~l~~~~ 163 (288)
T cd09024 86 --DDSVTFELTDNEETLKVYPFDFELRVTYTLEGNTLKVTYEVKNPDDKTMPFSIGGHPAFNCPLDEGEKFEDYYLEFEP 163 (288)
T ss_pred --CCEEEEEEccCcchhhcCCeEEEEEEEEEEeCCEEEEEEEEEcCCCCceEEEEeCCceEECCCCCCCcccceEEEECC
Confidence 46799999888877899999999999999999999999999999999999999999999998643 4433 32
Q ss_pred CCCCccc--c--c-cCccc-cccccCceEEeccC-c-ceE--EcCCC-CeEEEEeCCCCcEEEEEecCCCcEEEeCCccc
Q 023497 149 LETLDYF--D--Y-LMNKE-RFTEQADAITFDGE-I-DRV--YLSTP-TKIAIIDHEKKRTFELRKDGMPDSVVWNPWDK 217 (281)
Q Consensus 149 l~~~~~~--d--~-l~~~~-~~~~~~~~l~~~~~-~-D~v--y~~~~-~~~~l~~~~~~~~i~i~~~~~~~~vvwnP~~~ 217 (281)
.....+. | . ++... ......+.+.+... . |.+ |.... +.++|.+++.++.|+|..+++++++||+|..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~l~~~~~~~l~vwt~~~- 242 (288)
T cd09024 164 KEELERIPLVGPLGLLGEKKPLLLNEGTLPLTHDLFDDDALIFDNLKSREVTLKSKKTGHGVTVDFDDFPYLGIWSKPN- 242 (288)
T ss_pred cccceEEecCCccccccccccccCCCCeecCCHHHhcCCEEEEcCCCccEEEEEcCCCCCEEEEEeCCCCEEEEeCCCC-
Confidence 1111111 2 1 22111 11111223444332 2 333 44433 5788888777889999988899999999852
Q ss_pred ccccCCCCCCCCCcceEEeccccc--------------CCCeEeCCCCEEEEEEEEEE
Q 023497 218 KAKALPDMGVDGYKTMLCVDSAAI--------------ENPIVLKPFEEWRGRQELST 261 (281)
Q Consensus 218 ~~~~~~d~~~~~~~~~vCvEp~~~--------------~~~~~L~pge~~~~~~~i~~ 261 (281)
.++|||||||+. .|++.|+|||+++.+++|++
T Consensus 243 ------------~~~~iciEP~t~~~da~~~~~~~~~~~gl~~L~PGe~~~~~~~i~~ 288 (288)
T cd09024 243 ------------GAPFVCIEPWYGLADSVGFDGDLEDKEGINKLEPGESFEASYSITI 288 (288)
T ss_pred ------------CCCEEEEcCCCCCCCcCCCCccccccCCCEEeCCCCEEEEEEEEEC
Confidence 167999999984 38899999999999999874
No 7
>cd01081 Aldose_epim aldose 1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism; they catalyze the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=1.4e-32 Score=245.74 Aligned_cols=225 Identities=19% Similarity=0.278 Sum_probs=170.0
Q ss_pred CCCcEEEEECCCcceEEEEecCC-------CCCcCCcceEccccCCCC------------------CCccceeeeccCeE
Q 023497 10 DGLPRIILTEPTGSSAESFWKPP-------KAIRGGIPVCFPQFGNLG------------------LLEQHGFARNRFWS 64 (281)
Q Consensus 10 ~~l~~~~l~~~~g~~~~v~~~~~-------~~irgGiPv~fP~~G~~~------------------~~p~HGfaR~~~W~ 64 (281)
-|..+..+..+.+ .+|+|..+ .++++|.|+||||+||+. .+++|||+|++.|+
T Consensus 8 ~Ga~i~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~l~P~~gri~~g~~~~~g~~~~~~~~~~~~~lHG~~~~~~w~ 85 (284)
T cd01081 8 RGANIISLKVKGD--VDLLWGYPDAEEYPLAPTGGGGAILFPFANRISDGRYTFDGKQYPLNEDEGGNAIHGFVRNLPWR 85 (284)
T ss_pred cCcEEEEEEcCCC--ceEEecCCChhhhcccCCCCcceEecCcCCcccCCEEeECCEEecCCCCCCCccccCCeecCcEE
Confidence 3777788877652 47766443 258999999999999861 47899999999999
Q ss_pred EeecCCCCCCCCCccEEEEEecCChhhhccCCcceEEEEEEEEeCCeeEEEEEEEeCCCCceeeeecCcceeecCCC--C
Q 023497 65 LDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALRNYLSVSDI--S 142 (281)
Q Consensus 65 v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~~~L~~~~L~~~l~v~N~g~~~~~f~~g~HpYF~v~~~--~ 142 (281)
++... .++.+|+|.+...+++. +|||+|+++++|+|.+++|+++++|+|+++++|||++|+||||+++.. .
T Consensus 86 v~~~~------~~~~~v~l~~~~~~~~~-~~P~~~~l~~ty~L~~~~L~i~~~v~N~~~~~~p~~~g~HpyF~~~~~~~~ 158 (284)
T cd01081 86 VVATD------EEEASVTLSYDLNDGPG-GYPFPLELTVTYTLDADTLTITFTVTNLGDEPMPFGLGWHPYFGLPGVAIE 158 (284)
T ss_pred EEEec------cCCcEEEEEEEeCCCCC-CCCEEEEEEEEEEEeCCeEEEEEEEEeCCCCCcceeeecCceEecCCCccc
Confidence 98763 13567888888776655 899999999999999999999999999999999999999999999974 6
Q ss_pred eeEEEcCCCCccc--c--ccCccccccc----cCceEEe-ccCcceEEcCCC-----CeEEEEeCCCCcEEEEEecCCCc
Q 023497 143 EVRVEGLETLDYF--D--YLMNKERFTE----QADAITF-DGEIDRVYLSTP-----TKIAIIDHEKKRTFELRKDGMPD 208 (281)
Q Consensus 143 ~~~v~gl~~~~~~--d--~l~~~~~~~~----~~~~l~~-~~~~D~vy~~~~-----~~~~l~~~~~~~~i~i~~~~~~~ 208 (281)
++++.... ..+. | .++.+..... ......+ ...+|++|.... ..++|.++.++++|++.... +.
T Consensus 159 ~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~ 236 (284)
T cd01081 159 DLRLRVPA-SKVLPLDDLLPPTGELEVPGEEDFRLGRPLGGGELDDCFLLLGNDAGTAEARLEDPDSRISVEFETGW-PF 236 (284)
T ss_pred ceEEEecC-CEEEecCCccCCCCccCCcccccccCCcCcCCcccccccccCcCCCCeeEEEEECCCCeEEEEEeCCC-CE
Confidence 67666433 2333 2 1221111000 0111222 357899997543 26889998888999998876 99
Q ss_pred EEEeCCcccccccCCCCCCCCCcceEEeccccc---------CCCeEeC-CCCEEEEEE
Q 023497 209 SVVWNPWDKKAKALPDMGVDGYKTMLCVDSAAI---------ENPIVLK-PFEEWRGRQ 257 (281)
Q Consensus 209 ~vvwnP~~~~~~~~~d~~~~~~~~~vCvEp~~~---------~~~~~L~-pge~~~~~~ 257 (281)
+|||+|+. +.+.|+||||++. .+.++|+ |||+++.++
T Consensus 237 ~~v~t~~~------------~~~~~~ciEP~t~~~da~~~~~~~~~~L~~pge~~~~~~ 283 (284)
T cd01081 237 WQVYTGDG------------GRRGSVAIEPMTSAPDAFFNNNGGLITLKPPGETRTFSI 283 (284)
T ss_pred EEEECCCC------------CcCCEEEEccccCCCCCCCCCCCceEEeCCCCceEEEEe
Confidence 99999962 1368999999986 2789999 999887764
No 8
>PF01263 Aldose_epim: Aldose 1-epimerase; InterPro: IPR008183 Aldose 1-epimerase (5.1.3.3 from EC) (mutarotase) is the enzyme responsible for the anomeric interconversion of D-glucose and other aldoses between their alpha- and beta-forms. The sequence of mutarotase from two bacteria, Acinetobacter calcoaceticus and Streptococcus thermophilus is available []. It has also been shown that, on the basis of extensive sequence similarities, a mutarotase domain seems to be present in the C-terminal half of the fungal GAL10 protein which encodes, in the N-terminal part, UDP-glucose 4-epimerase.; GO: 0016853 isomerase activity, 0005975 carbohydrate metabolic process; PDB: 1YGA_A 3DCD_A 2CIQ_A 2CIS_A 2CIR_A 2HTB_C 2HTA_B 3Q1N_A 1NSZ_B 1NSR_B ....
Probab=100.00 E-value=4e-32 Score=245.29 Aligned_cols=213 Identities=24% Similarity=0.336 Sum_probs=147.4
Q ss_pred CcceEccccCCCCCCccceeeeccCeEEeecCCCCCCCCCccEEEEEecCChhhhccCCcceEEEEEEEEeCCe-eEEEE
Q 023497 38 GIPVCFPQFGNLGLLEQHGFARNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISPGK-LTLIP 116 (281)
Q Consensus 38 GiPv~fP~~G~~~~~p~HGfaR~~~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~~~L~~~~-L~~~l 116 (281)
|.+.|||+++. +++++|||+|++.|+|++.. . +++++|++..+.+..++|||+|+++++|+|.+++ |++++
T Consensus 70 g~~~~l~~~~~-~~~~~HG~~~~~~w~v~~~~------~-~~~~~~~~~~~~~~~~~yP~~~~l~~~y~L~~~~~L~i~~ 141 (300)
T PF01263_consen 70 GKPYCLPWNGP-YPNPIHGFARNKPWEVEEQS------E-DDSVSFTLVSDPDGEEGYPFDFRLRITYTLDENGKLTITY 141 (300)
T ss_dssp TEEEEBSSSBT-TTBEETBSGGGSB-EEEEEE------E-TTEEEEEEEEEETTHHHSSSEEEEEEEEEEETTEEEEEEE
T ss_pred CEEEEeeeccC-CCcCCCCCcccccEEEEEec------c-cceEEEEEEecCccceeeccceeeEEEEEECCCCeEEEEE
Confidence 44445554443 57899999999999999883 1 2567777766343346799999999999999999 99999
Q ss_pred EEEeCCCCceeeeecCcceeecC----CCCeeEEEcCCCCcccc-ccCcc-------ccccc-cCceEEecc-CcceEEc
Q 023497 117 RVRNVDNKAFSFMFALRNYLSVS----DISEVRVEGLETLDYFD-YLMNK-------ERFTE-QADAITFDG-EIDRVYL 182 (281)
Q Consensus 117 ~v~N~g~~~~~f~~g~HpYF~v~----~~~~~~v~gl~~~~~~d-~l~~~-------~~~~~-~~~~l~~~~-~~D~vy~ 182 (281)
+|+|.+ ++|||++|+||||+++ +...+++.+.....+.+ .++.+ ..+.. ....+.... .+|++|.
T Consensus 142 ~v~n~~-~~~p~~~g~HpyF~l~~~~~~~~~~~~~~~~~~~~~~~~lptg~~~~~~~~~~d~~~~~~i~~~~~~~D~~f~ 220 (300)
T PF01263_consen 142 EVTNDG-KPMPFNLGFHPYFNLPGEDIDDHQLQVPADEYLELDERLLPTGELAPVKGTPFDFRQGRPIGDDIPGLDHCFV 220 (300)
T ss_dssp EEEESS-SEEEEBEEEEEEEETTCTSGTTGEEEEEEEEEEEEETTSSEEEEEEETTTCETCGSSSEEECSSCTCEEEEEE
T ss_pred EEEecC-ccEEeeccccceEEcCCcceeeeEEEeccceeeecccccCCceeeecccCCccccccCeeecccccccceEEE
Confidence 999999 9999999999999999 55667776533222222 12211 11111 111222222 6899998
Q ss_pred CCC-CeEEEEeCCCCcEEEEEe-cCCCcEEEeCCcccccccCCCCCCCCCcceEEecccccC-CCeEeCCCCEEEEEEEE
Q 023497 183 STP-TKIAIIDHEKKRTFELRK-DGMPDSVVWNPWDKKAKALPDMGVDGYKTMLCVDSAAIE-NPIVLKPFEEWRGRQEL 259 (281)
Q Consensus 183 ~~~-~~~~l~~~~~~~~i~i~~-~~~~~~vvwnP~~~~~~~~~d~~~~~~~~~vCvEp~~~~-~~~~L~pge~~~~~~~i 259 (281)
..+ ...++.....++++.|+. .++|.+|||||+.+. +.+...+-..+..++|+|+.... +.+.|+|||+++.+++|
T Consensus 221 ~~~~~~~~~~~~~~~~~i~l~~~~~~p~~~v~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGe~~~~~~~~ 299 (300)
T PF01263_consen 221 LDPPGRPVIRLRSPGSGISLEFSTSFPWLVVWTPGFDP-KYICIEPIAIEPDFVPDEANNPGKGLIVLAPGESYSFSTRY 299 (300)
T ss_dssp ESSSSEEEEEEETTTEEEEEEEEESSSEEEEEEETTSS-TEETTCEEECEEESECECCCECCHEGEEEETTSEEEEEEEE
T ss_pred cCCCccEEEEeecccceEEEEecCCCCcEEEECCCCcc-cccCCcccccCCCeeecccccCCCCCEEECCCCEEEEEEEE
Confidence 776 566666666777777774 468899999997542 12222222334556666666543 57999999999999998
Q ss_pred E
Q 023497 260 S 260 (281)
Q Consensus 260 ~ 260 (281)
+
T Consensus 300 ~ 300 (300)
T PF01263_consen 300 T 300 (300)
T ss_dssp E
T ss_pred C
Confidence 5
No 9
>cd09022 Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to Escherichia coli YihR. Proteins similar to Escherichia coli YihR are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=99.98 E-value=1.2e-30 Score=234.66 Aligned_cols=227 Identities=20% Similarity=0.227 Sum_probs=161.9
Q ss_pred CCCCcEEEEECCCcceEEEEecCCCC---CcCCcceEccccCCC-----------CCCc---------cceeeeccCeEE
Q 023497 9 KDGLPRIILTEPTGSSAESFWKPPKA---IRGGIPVCFPQFGNL-----------GLLE---------QHGFARNRFWSL 65 (281)
Q Consensus 9 ~~~l~~~~l~~~~g~~~~v~~~~~~~---irgGiPv~fP~~G~~-----------~~~p---------~HGfaR~~~W~v 65 (281)
.-|..++.+.. .| .+|+|..+.+ +....|+|||+.||+ +.++ +|||+|.+.|++
T Consensus 7 ~~Ga~l~~~~~-~g--~~il~~~~~~~~~~~~~g~~l~p~~nRi~~g~~~~~G~~y~l~~N~~~~~~~~HG~~~~~~w~v 83 (284)
T cd09022 7 EVGAGLRSLTV-GG--RDLVEPYPADEVPPGAAGQVLAPWPNRIADGRYTFDGVEHQLPITEPERGNAIHGLVRWADWQL 83 (284)
T ss_pred ecCcEEEEEEE-CC--EEEEecCCCccCCccccccEEeeeCCcccCCEEEECCEEEEccCcCCCCCCCCcCCeecceEEE
Confidence 35666666665 44 4777765543 233447999999997 2455 999999999999
Q ss_pred eecCCCCCCCCCccEEEEEecCChhhhccCCcceEEEEEEEEeCCeeEEEEEEEeCCCCceeeeecCcceeecCCC--Ce
Q 023497 66 DEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALRNYLSVSDI--SE 143 (281)
Q Consensus 66 ~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~~~L~~~~L~~~l~v~N~g~~~~~f~~g~HpYF~v~~~--~~ 143 (281)
++.. +++|+|++... ..++|||+|+++++|+|.+++|+++++|+|+++++|||++|+||||++++. .+
T Consensus 84 ~~~~--------~~~v~l~l~~~--~~~~yP~~~~~~~~y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpyF~l~~~~~~~ 153 (284)
T cd09022 84 VEHT--------DSSVTLRTRIP--PQPGYPFTLELTVTYELDDDGLTVTLTATNVGDEPAPFGVGFHPYLSAGGAPLDE 153 (284)
T ss_pred eecc--------CCeEEEEEEeC--CccCCCceEEEEEEEEEcCCcEEEEEEEEeCCCCCeEeeeEecceEecCCCCccc
Confidence 8763 35688888764 347899999999999999999999999999999999999999999999853 55
Q ss_pred eEEEcCCCCccc--c--ccCccccccccCceEEe-------ccCcceEEcCCC------CeEEEEeCCCCcEEEEEe-cC
Q 023497 144 VRVEGLETLDYF--D--YLMNKERFTEQADAITF-------DGEIDRVYLSTP------TKIAIIDHEKKRTFELRK-DG 205 (281)
Q Consensus 144 ~~v~gl~~~~~~--d--~l~~~~~~~~~~~~l~~-------~~~~D~vy~~~~------~~~~l~~~~~~~~i~i~~-~~ 205 (281)
.++.-. ...++ | .++.+... .....+.| ...+|++|.... ..++|.++.+ ++|+|.. .+
T Consensus 154 ~~L~~~-a~~~~~~d~~~lptg~~~-~~~~~~df~~~~~l~~~~~D~~f~~~~~~~~~~~~~~l~~~~~-~~l~l~~~~~ 230 (284)
T cd09022 154 CTLTLP-ADTWLPVDERLLPTGTEP-VAGTPYDFRTGRRLGGTALDTAFTDLTRDADGRARARLTGPDG-RGVELWADES 230 (284)
T ss_pred EEEEEE-CceEEecCCccCCCcCcC-CCCCCccCcCCccccCccccccccccccCCCCcEEEEEECCCC-CEEEEEECCC
Confidence 555421 12222 2 23322111 11111222 126899987532 2678888766 8999997 56
Q ss_pred CCcEEEeCCcccccccCCCCCCCCCcceEEeccccc--------CCCeEeCCCCEEEEEEEE
Q 023497 206 MPDSVVWNPWDKKAKALPDMGVDGYKTMLCVDSAAI--------ENPIVLKPFEEWRGRQEL 259 (281)
Q Consensus 206 ~~~~vvwnP~~~~~~~~~d~~~~~~~~~vCvEp~~~--------~~~~~L~pge~~~~~~~i 259 (281)
+|.++||+|... +...-+.+||||||+. .+.++|+|||+++.+++|
T Consensus 231 ~~~~~vyt~~~~--------~~~~~~~~iclEP~~~~~da~n~~~~~~~L~pge~~~~~~~i 284 (284)
T cd09022 231 FPWVQVFTADTL--------PPPGRRRGLAVEPMTCPPNAFNSGTDLIVLAPGETHTASWGI 284 (284)
T ss_pred CCEEEEECCCCC--------CCCCCCCEEEEccCCCCCCcCcCCCCcEEECCCCEEEEEEeC
Confidence 899999998421 0011267999999985 378899999999988875
No 10
>PRK15172 putative aldose-1-epimerase; Provisional
Probab=99.97 E-value=3.3e-30 Score=233.42 Aligned_cols=202 Identities=15% Similarity=0.166 Sum_probs=152.3
Q ss_pred CCcceEccccCCC-----------CCCc---------cceeeeccCeEEeecCCCCCCCCCccEEEEEecCChhhhccCC
Q 023497 37 GGIPVCFPQFGNL-----------GLLE---------QHGFARNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWP 96 (281)
Q Consensus 37 gGiPv~fP~~G~~-----------~~~p---------~HGfaR~~~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P 96 (281)
.+.++||||.||+ |.++ +||+++.+.|+|.+.. +++++|.+...+ ..+||
T Consensus 54 ~~g~~L~P~anRI~~g~f~~~G~~y~L~~N~~~~~~~lHG~~~~~~W~v~~~~--------~~~v~l~~~~~~--~~gyP 123 (300)
T PRK15172 54 HLGKVLIPWPNRIANGCYRYQGQEYQLPINEHVSKAAIHGLLAWRDWQISELT--------ATSVTLTAFLPP--SYGYP 123 (300)
T ss_pred ccccEecccCCeecCCEEEECCEEEECCCCCCCCCcccCCCccCceEEEEEec--------CCEEEEEEEcCC--CCCCC
Confidence 3448999999997 2343 9999999999997653 346888887644 26899
Q ss_pred cceEEEEEEEEeC-CeeEEEEEEEeCCCCceeeeecCcceeecC--CCCeeEEEcCCCCccc--c--ccCccccccccCc
Q 023497 97 RGFELRLRISISP-GKLTLIPRVRNVDNKAFSFMFALRNYLSVS--DISEVRVEGLETLDYF--D--YLMNKERFTEQAD 169 (281)
Q Consensus 97 ~~f~l~~~~~L~~-~~L~~~l~v~N~g~~~~~f~~g~HpYF~v~--~~~~~~v~gl~~~~~~--d--~l~~~~~~~~~~~ 169 (281)
|+|+++++|+|.+ ++|+++++++|.++++|||++|+||||+++ ++.+.++.- ....++ | .++.+.. ...+.
T Consensus 124 ~~~~~~v~y~L~~~~~L~i~~~~~n~~~~~~P~~~g~HpYFnl~~~~~~~~~L~~-~a~~~~~~d~~~iPtg~~-~~~~~ 201 (300)
T PRK15172 124 FMLASQVIYSLDAATGLSVEIASQNIGDVPAPYGVGIHPYLTCNLTSVDEYLLQL-PANQVLAVDEHANPTTLH-HVDEL 201 (300)
T ss_pred EEEEEEEEEEEccCCeEEEEEEEEECCCCceeeEEecCceEecCCCChhceEEEE-eCCeEEecCCCcCCCccc-cCCCC
Confidence 9999999999985 799999999999999999999999999997 345555542 222333 2 2333211 00111
Q ss_pred eEEe------c-cCcceEEcCCCC--eEEEEeCCCCcEEEEEecCCCcEEEeCCcccccccCCCCCCCCCcceEEecccc
Q 023497 170 AITF------D-GEIDRVYLSTPT--KIAIIDHEKKRTFELRKDGMPDSVVWNPWDKKAKALPDMGVDGYKTMLCVDSAA 240 (281)
Q Consensus 170 ~l~~------~-~~~D~vy~~~~~--~~~l~~~~~~~~i~i~~~~~~~~vvwnP~~~~~~~~~d~~~~~~~~~vCvEp~~ 240 (281)
.+.| . ..+|++|....+ .++|.++.++++|++.++ .+.+|||+|... .+.+|||||++
T Consensus 202 ~~df~~~~~l~~~~~D~~f~~~~~~~~~~l~~~~~g~~l~~~~~-~~~~~vyt~~~~------------~~~~~ciEp~t 268 (300)
T PRK15172 202 DLDFSQAKKIAATKIDHTFKTANDLWEVRITHPQQALSVSLCSD-QPWLQIYSGEKL------------QRQGLAVEPMS 268 (300)
T ss_pred CcCCCCCeECCCCCccCEEEcCCCceEEEEEeCCCCeEEEEEcC-CCEEEEECCCCC------------CCCEEEEeCCC
Confidence 1222 2 369999987754 689999999999999876 689999998421 15799999998
Q ss_pred cC--------CCeEeCCCCEEEEEEEEEEEe
Q 023497 241 IE--------NPIVLKPFEEWRGRQELSTVS 263 (281)
Q Consensus 241 ~~--------~~~~L~pge~~~~~~~i~~~~ 263 (281)
.. +.++|+|||+++.+++|+...
T Consensus 269 ~p~dA~n~~~g~~~L~pge~~~~~~~i~~~~ 299 (300)
T PRK15172 269 CPPNAFNSGIDLLLLEPGKTHRLFFNIGGQR 299 (300)
T ss_pred CCCCCCCCCCCCEEECCCCEEEEEEEEEEEc
Confidence 63 899999999999999998753
No 11
>COG2017 GalM Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism]
Probab=99.96 E-value=5.2e-27 Score=213.07 Aligned_cols=206 Identities=20% Similarity=0.282 Sum_probs=145.2
Q ss_pred CCcC-CcceEccccCCC-----------CCCc-------cceeeeccCeEEeecCCCCCCCCCccEEEEEecCChhhhcc
Q 023497 34 AIRG-GIPVCFPQFGNL-----------GLLE-------QHGFARNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKA 94 (281)
Q Consensus 34 ~irg-GiPv~fP~~G~~-----------~~~p-------~HGfaR~~~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~ 94 (281)
..++ +.++|+|+.||+ |.++ +||+++..+|++.+... .+...++|.+.+.+ .+
T Consensus 56 ~~~~~~ga~l~p~anRI~~g~f~~~G~~y~L~~N~~~~~lHG~~~~~~~~v~~~~~-----~~~~~~~l~~~~~~---~g 127 (308)
T COG2017 56 ATRGYGGAILGPYANRISNGRFTLDGKTYQLPPNEGGNALHGGARDFDWQVWEAEE-----DDNAEFSLVLRDGE---DG 127 (308)
T ss_pred cccccccceecCccCcccCCEEEECCEEEEeCCCCCCccccCCccCCCeeEEEEEe-----ccCCEEEEEecccC---CC
Confidence 3566 789999999997 3454 99999999999998753 12225666665544 45
Q ss_pred CCcceEEEEEEEEeCCeeEEEEEEEeCCCCceeeeecCcceeecCCCCe---eEEEcCCCCccc---c--ccCccc----
Q 023497 95 WPRGFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALRNYLSVSDISE---VRVEGLETLDYF---D--YLMNKE---- 162 (281)
Q Consensus 95 ~P~~f~l~~~~~L~~~~L~~~l~v~N~g~~~~~f~~g~HpYF~v~~~~~---~~v~gl~~~~~~---d--~l~~~~---- 162 (281)
|||+|+++++|+|.+++|+|+++++|.++++|||++|+||||+++...+ .... ....|+ + .++.+.
T Consensus 128 yP~~l~~~vtY~L~~~~L~v~~~~~n~~~~~~p~~~g~HpYFnl~~~~~~~~~~~~--~~~~~l~~~~~~~ip~~~~~~~ 205 (308)
T COG2017 128 YPGNLEATVTYTLNEDGLTVTYEVTNDGDEPTPFNLGNHPYFNLPGDGRLEHILAI--ASDYYLPVDDEEPIPTGDIKRE 205 (308)
T ss_pred CCceEEEEEEEEEcCCCEEEEEEEEeCCCCcceecccccceEecCCCCCcccEEEe--cCCceEEcccCCCCCccccccc
Confidence 9999999999999998899999999999999999999999999996542 2221 112222 1 122111
Q ss_pred cccccCceEEeccCcceEEcCC-----CCeEEEEeCCCCcEEEEEec-CCCcEEEeCCcccccccCCCCCCCCCcceEEe
Q 023497 163 RFTEQADAITFDGEIDRVYLST-----PTKIAIIDHEKKRTFELRKD-GMPDSVVWNPWDKKAKALPDMGVDGYKTMLCV 236 (281)
Q Consensus 163 ~~~~~~~~l~~~~~~D~vy~~~-----~~~~~l~~~~~~~~i~i~~~-~~~~~vvwnP~~~~~~~~~d~~~~~~~~~vCv 236 (281)
.... ...+.....+|+.|... ...+.|.++.++++|+|+++ .+..++.||+.. -..++||
T Consensus 206 ~~~~-~~~~~~~~~~d~~f~~~~~~~~~~~a~l~~~~~~~~l~v~t~~p~~~~yt~~~~~-------------~~~~~cl 271 (308)
T COG2017 206 PKPL-EDDFAADDPYDHAFLLNGARGLKPAARLYDPDSGLSLEVETDEPFVQLYTGNFLA-------------GRDGLCL 271 (308)
T ss_pred cccc-ccccccccccccceeeccccCCcceEEEEcCCCCeEEEEEeCCCeEEEEeCCCCC-------------cCCeEEe
Confidence 1100 01111111247776433 34788999999999999976 444555555421 2679999
Q ss_pred cccc-c--------CCCeEeCCCCEEEEEEEEEEEe
Q 023497 237 DSAA-I--------ENPIVLKPFEEWRGRQELSTVS 263 (281)
Q Consensus 237 Ep~~-~--------~~~~~L~pge~~~~~~~i~~~~ 263 (281)
|||+ . .+...|+|||+++..++|++..
T Consensus 272 Ep~~~~pdA~n~~~~~~~~L~pGe~~~~~~~~~~~~ 307 (308)
T COG2017 272 EPQSGLPDAFNHPGFGLIVLEPGETYSAETRFRFES 307 (308)
T ss_pred eeccCCCCcCCCCCcccceeCCCCEEEEEEEEEEec
Confidence 9998 2 4667799999999999999864
No 12
>cd09019 galactose_mutarotase_like galactose mutarotase_like. Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily.
Probab=99.95 E-value=1.9e-26 Score=211.31 Aligned_cols=236 Identities=16% Similarity=0.242 Sum_probs=156.1
Q ss_pred CCCcEEEEECC--CcceEEEEecCCCC--CcC----CcceEccccCCC-----------CCCcc-----------ceeee
Q 023497 10 DGLPRIILTEP--TGSSAESFWKPPKA--IRG----GIPVCFPQFGNL-----------GLLEQ-----------HGFAR 59 (281)
Q Consensus 10 ~~l~~~~l~~~--~g~~~~v~~~~~~~--irg----GiPv~fP~~G~~-----------~~~p~-----------HGfaR 59 (281)
-|..+..|..+ +|...+|+|..+.+ +.. --|++.||.||+ +.+++ |||+|
T Consensus 17 ~GA~l~~l~~~~~~g~~~~~v~~~~~~~~~~~~~~~~g~~lgp~anRi~~g~~~~~G~~y~l~~Ne~~~~LHGg~~G~~~ 96 (326)
T cd09019 17 YGATIQSLKVPDKNGKLRDVVLGFDDLEDYLKNSPYFGATVGRVANRIANGRFTLDGKTYQLEANEGPNHLHGGPKGFDK 96 (326)
T ss_pred cCcEEEEEEEECCCCCEeeeEECCCCHHHHhhCCCccCCcccCcCCeecCCEEEECCEEEEccCCCCCcccCCCCccccC
Confidence 44455554433 34445666665321 221 223455677775 34554 77788
Q ss_pred ccCeEEeecCCCCCCCCCccEEEEEecCChhhhccCCcceEEEEEEEEeC-CeeEEEEEEEeCCCCceeeeecCcceeec
Q 023497 60 NRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISP-GKLTLIPRVRNVDNKAFSFMFALRNYLSV 138 (281)
Q Consensus 60 ~~~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~~~L~~-~~L~~~l~v~N~g~~~~~f~~g~HpYF~v 138 (281)
. .|++.... +++|+|++.+.+ ..++|||+|+++++|+|.+ ++|+++++++| +++|||++|+||||++
T Consensus 97 ~-~w~~~~~~--------~~~v~l~~~~~~-~~~gyP~~~~~~v~y~L~~~~~L~i~~~~~~--~~~~p~~~g~HpyFnl 164 (326)
T cd09019 97 R-VWDVEEVE--------ENSVTFSLVSPD-GEEGFPGNLTVTVTYTLTDDNELTIEYEATT--DKPTPVNLTNHSYFNL 164 (326)
T ss_pred c-EEeEEecc--------CCEEEEEEECCc-ccCCCCeEEEEEEEEEECCCCEEEEEEEEEe--CCCeEecccceeeEec
Confidence 5 99998762 567999998764 4689999999999999998 89999999998 5999999999999999
Q ss_pred CC-----CCeeEEEcCCCCccc--c--ccCcccccccc--------CceE---------E-eccCcceEEc--CC----C
Q 023497 139 SD-----ISEVRVEGLETLDYF--D--YLMNKERFTEQ--------ADAI---------T-FDGEIDRVYL--ST----P 185 (281)
Q Consensus 139 ~~-----~~~~~v~gl~~~~~~--d--~l~~~~~~~~~--------~~~l---------~-~~~~~D~vy~--~~----~ 185 (281)
+. +.+..+. +....++ | .++.+...... ...+ . -...+|++|. .+ .
T Consensus 165 ~~~~~~~~~~~~L~-~~a~~~~~~d~~~iPtG~~~~~~~~~~df~~~~~l~~~~~~~~~~~~~~~~D~~f~l~~~~~~~~ 243 (326)
T cd09019 165 AGEGSGDILDHELQ-INADRYLPVDEELIPTGEILPVAGTPFDFRKPKPIGRIDLDDEQLKLGGGYDHNFVLDKGGGKLR 243 (326)
T ss_pred CCCCCCCccceEEE-EecCcEEeeCCCCCcCCCceecCCCCccccCccCccccccchhhcccCCCcceEEEECCCCCccc
Confidence 83 3445443 2222333 1 23322110000 0001 1 1247999996 22 2
Q ss_pred CeEEEEeCCCCcEEEEEecCCCcEEEeCCcccccccCCCCCC--CCCcceEEeccccc--------CCCeEeCCCCEEEE
Q 023497 186 TKIAIIDHEKKRTFELRKDGMPDSVVWNPWDKKAKALPDMGV--DGYKTMLCVDSAAI--------ENPIVLKPFEEWRG 255 (281)
Q Consensus 186 ~~~~l~~~~~~~~i~i~~~~~~~~vvwnP~~~~~~~~~d~~~--~~~~~~vCvEp~~~--------~~~~~L~pge~~~~ 255 (281)
..++|.++.++++|+|.++ .|.+|||++..... ... ... ...+.+|||||++. .+.++|+|||+++.
T Consensus 244 ~~a~l~~~~sg~~l~v~t~-~p~~~vyT~~~~~~-~~~-~~~~~~~~~~~iclEpq~~pdA~n~~~~g~~~L~pge~~~~ 320 (326)
T cd09019 244 PAARLTSPESGRKLEVYTT-QPGVQFYTGNFLDG-TPG-GGGKVYGKRSGFCLETQHFPDAPNHPNFPSIILRPGETYRH 320 (326)
T ss_pred eeEEEEcCCCCcEEEEecC-CCEEEEEeCCCCCc-ccC-CCCcEeCCCCEEEEeccCCCCcccccCCCCeEECCCCEEEE
Confidence 3678999888999999865 78999999853211 100 011 12367999999974 46889999999999
Q ss_pred EEEEEE
Q 023497 256 RQELST 261 (281)
Q Consensus 256 ~~~i~~ 261 (281)
.++|++
T Consensus 321 ~~~y~f 326 (326)
T cd09019 321 TTVYRF 326 (326)
T ss_pred EEEEEC
Confidence 988864
No 13
>PLN00194 aldose 1-epimerase; Provisional
Probab=99.93 E-value=5.8e-24 Score=195.45 Aligned_cols=212 Identities=14% Similarity=0.230 Sum_probs=145.1
Q ss_pred ceEccccCCC-----------CCCc-------cceeee---ccCeEEeecCCCCCCCCCccEEEEEecCChhhhccCCcc
Q 023497 40 PVCFPQFGNL-----------GLLE-------QHGFAR---NRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRG 98 (281)
Q Consensus 40 Pv~fP~~G~~-----------~~~p-------~HGfaR---~~~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~ 98 (281)
+++.|+.||+ +.++ +||+.+ .+.|+|+... ++++.+|+|.+.+.+ ...+|||+
T Consensus 64 a~lgp~anRI~~g~~~~~G~~y~l~~N~~~~~lHGg~~G~~~~~w~v~~~~-----~~~~~~v~~~l~~~~-~~~gyP~~ 137 (337)
T PLN00194 64 AIVGRVANRIKGAKFTLNGVTYKLPPNNGPNSLHGGPKGFSKVVWEVAKYK-----KGEKPSITFKYHSFD-GEEGFPGD 137 (337)
T ss_pred CeeCCCCCceeCCEEEECCEEEEeccCCCCcccCCCCcccCceEEeEEEec-----cCCCcEEEEEEECCC-cCCCCCEE
Confidence 3488888886 2344 597643 4899998763 123478999998764 36899999
Q ss_pred eEEEEEEEEeC-CeeEEEEEEEeCCCCceeeeecCcceeecCC-----CCeeEEEcCCCCccc--c--ccCccccccccC
Q 023497 99 FELRLRISISP-GKLTLIPRVRNVDNKAFSFMFALRNYLSVSD-----ISEVRVEGLETLDYF--D--YLMNKERFTEQA 168 (281)
Q Consensus 99 f~l~~~~~L~~-~~L~~~l~v~N~g~~~~~f~~g~HpYF~v~~-----~~~~~v~gl~~~~~~--d--~l~~~~~~~~~~ 168 (281)
|+++++|+|.+ ++|+++++++|. +++|||++|+||||+++. +.+.++. +....++ | .++.++......
T Consensus 138 ~~~~v~Y~L~~~~~L~i~~~~~n~-~~~~p~~~g~HpYFnL~~~~~~~i~~~~L~-i~a~~~~~~d~~~iPtG~~~~v~~ 215 (337)
T PLN00194 138 LSVTVTYTLLSSNTLRLDMEAKPL-NKATPVNLAQHTYWNLAGHNSGDILSHKIQ-IFGSHITPVDENLIPTGEILPVKG 215 (337)
T ss_pred EEEEEEEEECCCCeEEEEEEEEEC-CCCeEEEccccceEEcCCCCCCCcCCeEEE-EecCCEEEeCCCcCcCCceeeCCC
Confidence 99999999985 899999999999 999999999999999973 3444443 2222333 1 233221110000
Q ss_pred ceEE------e-------ccCcceEEcCC-------CCeEEEEeCCCCcEEEEEecCCCcEEEeCCcccccccCCCCCCC
Q 023497 169 DAIT------F-------DGEIDRVYLST-------PTKIAIIDHEKKRTFELRKDGMPDSVVWNPWDKKAKALPDMGVD 228 (281)
Q Consensus 169 ~~l~------~-------~~~~D~vy~~~-------~~~~~l~~~~~~~~i~i~~~~~~~~vvwnP~~~~~~~~~d~~~~ 228 (281)
.... + ...+|++|... ...++|.++.++++++|.++ .|.+|||++..-. .. ......
T Consensus 216 t~~Df~~~~~l~~~~~~~~~g~Dh~f~l~~~~~~~~~~~a~l~~~~sg~~l~v~t~-~p~v~vyT~n~~~-~~-~~~~~~ 292 (337)
T PLN00194 216 TPFDFTTPKKIGSRINELPKGYDHNYVLDGEEKEGLKKAAKVKDPKSGRVLELWTN-APGMQFYTSNYVN-GV-KGKGGA 292 (337)
T ss_pred CCcccCCCcCcchhhccccCCcceEEEECCCCcccceeeEEEEcCCCCCEEEEEeC-CCEEEEECCCCCC-Cc-cCCCCC
Confidence 0111 1 13789999631 22578888888999999987 5999999975211 00 000010
Q ss_pred --CCcceEEeccccc--------CCCeEeCCCCEEEEEEEEEEE
Q 023497 229 --GYKTMLCVDSAAI--------ENPIVLKPFEEWRGRQELSTV 262 (281)
Q Consensus 229 --~~~~~vCvEp~~~--------~~~~~L~pge~~~~~~~i~~~ 262 (281)
.-..+|||||+.. .+.++|+|||.+...+++++.
T Consensus 293 ~~~~~~~i~lEpq~~pda~n~~~~~~~~L~pge~~~~~t~y~f~ 336 (337)
T PLN00194 293 VYGKHAGLCLETQGFPDAVNQPNFPSVVVNPGEKYKHTMLFEFS 336 (337)
T ss_pred EeCCCCEEEEeccCCCCcccCCCCCCeEECCCCEEEEEEEEEEe
Confidence 1246999999975 268899999999999999874
No 14
>TIGR02636 galM_Leloir galactose mutarotase. Members of this protein family act as galactose mutarotase (D-galactose 1-epimerase) and participate in the Leloir pathway for galactose/glucose interconversion. All members of the seed alignment for this model are found in gene clusters with other enzymes of the Leloir pathway. This enzyme family belongs to the aldose 1-epimerase family, described by pfam model pfam01263. However, the enzyme described as aldose 1-epimerase itself (EC 5.1.3.3) is called broadly specific for D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose. The restricted genome context for genes in this family suggests members should act primarily on D-galactose.
Probab=99.90 E-value=1.1e-22 Score=186.89 Aligned_cols=207 Identities=14% Similarity=0.202 Sum_probs=140.7
Q ss_pred ceEccccCCC-----------CCC-------ccceee---eccCeEEee-cCCCCCCCCCccEEEEEecCChhhhccCCc
Q 023497 40 PVCFPQFGNL-----------GLL-------EQHGFA---RNRFWSLDE-DASPLPPANNQSTVDLILKSTEEDIKAWPR 97 (281)
Q Consensus 40 Pv~fP~~G~~-----------~~~-------p~HGfa---R~~~W~v~~-~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~ 97 (281)
.++.||.||+ +.+ ..||+. +.+.|+++. . +..+|+|.+.+.+. ..+||+
T Consensus 59 a~igp~anRI~~g~f~~~G~~y~L~~N~~~n~lHGg~~G~~~~~W~v~~~~--------~~~~v~l~~~~~~~-~~gyPg 129 (335)
T TIGR02636 59 ATVGRYANRIANGSFEIDGETYQLSINQGGNCLHGGPEGFDKRRWNIEELQ--------EEVQVKFSLESPDG-DQGFPG 129 (335)
T ss_pred CCcCCCCceecCCEEEECCEEEEeccCCCCcccCCCCccccccEEeEeeec--------CCCEEEEEEECCCc-CCCCCe
Confidence 3567888886 223 489998 889999976 4 24579999987554 589999
Q ss_pred ceEEEEEEEE-eCCeeEEEEEEEeCCCCceeeeecCcceeecCC------CCeeEEEcCCCCccc--c--ccCccccccc
Q 023497 98 GFELRLRISI-SPGKLTLIPRVRNVDNKAFSFMFALRNYLSVSD------ISEVRVEGLETLDYF--D--YLMNKERFTE 166 (281)
Q Consensus 98 ~f~l~~~~~L-~~~~L~~~l~v~N~g~~~~~f~~g~HpYF~v~~------~~~~~v~gl~~~~~~--d--~l~~~~~~~~ 166 (281)
+++++++|+| .+++|+++++++ +++++||++++||||+++. +.+..+. +....++ | .++.++....
T Consensus 130 ~l~~~vtY~L~~~~~L~i~~~a~--~d~~tp~nlt~H~YFnL~g~~~~~~i~~~~L~-i~a~~~~~~d~~~iPtG~~~~v 206 (335)
T TIGR02636 130 NLTVSVTYTLTDDNELTIEYEAT--TDKATPFNLTNHVYFNLDGADAGSDVLSHELQ-LNADRYLPLDEEGIPLGQLKPV 206 (335)
T ss_pred EEEEEEEEEECCCCEEEEEEEEE--ECCceEEeccccceEEcCCCCCCCChhceEEE-EECCcEEEeCCCcCcCCceecC
Confidence 9999999999 458999999997 7999999999999999975 2233332 1222332 1 2222211000
Q ss_pred cCce------------------EEeccCcceEEcCC------CCeEEEEeCCCCcEEEEEecCCCcEEEeCCcccccccC
Q 023497 167 QADA------------------ITFDGEIDRVYLST------PTKIAIIDHEKKRTFELRKDGMPDSVVWNPWDKKAKAL 222 (281)
Q Consensus 167 ~~~~------------------l~~~~~~D~vy~~~------~~~~~l~~~~~~~~i~i~~~~~~~~vvwnP~~~~~~~~ 222 (281)
.... ......+|++|.-. ...++|.++.++++|+|.++ .|.+|||++..-. ...
T Consensus 207 ~~t~~Dfr~~~~l~~~~~~~~~~~~~~g~D~~f~l~~~~~~~~~~a~l~~~~sg~~l~v~t~-~p~~~vyT~~~~~-~~~ 284 (335)
T TIGR02636 207 DGTSFDFRKEKAIGQDFLANDQQQLAKGYDHAFLLNGERLDGKPAAILTSPDEDLSLEVFTT-QPALQIYTGNFLA-GTP 284 (335)
T ss_pred CCCccccCCCcCcCcccccccccccCCCcceEEEECCCCCCCceeEEEEcCCCCcEEEEecC-CCEEEEecCCCcC-Ccc
Confidence 0000 11112689999631 12478899889999999976 7999999974211 000
Q ss_pred CCCCC--CCCcceEEeccccc--------CCCe--EeCCCCEEEEEEEEEE
Q 023497 223 PDMGV--DGYKTMLCVDSAAI--------ENPI--VLKPFEEWRGRQELST 261 (281)
Q Consensus 223 ~d~~~--~~~~~~vCvEp~~~--------~~~~--~L~pge~~~~~~~i~~ 261 (281)
...+ ...+..||||||+. .+.+ +|+|||+++..+.|++
T Consensus 285 -~~~g~~~~~~~gialE~q~~pd~~n~~~~~~~~~~L~pge~~~~~t~y~f 334 (335)
T TIGR02636 285 -NRGGKKYVDHAGLALETQFLPDSPNHPEWGDISCILSPGQEYQHQTRYQF 334 (335)
T ss_pred -CCCCcEeCCCcEEEEecccCCCcccccCCCCCceEECCCCEEEEEEEEEE
Confidence 0011 12357999999985 2433 5999999999999887
No 15
>PRK11055 galM galactose-1-epimerase; Provisional
Probab=99.87 E-value=7.1e-20 Score=168.46 Aligned_cols=208 Identities=14% Similarity=0.194 Sum_probs=138.6
Q ss_pred ceEccccCCC-----------C-------CCccceee---eccCeEEeecCCCCCCCCCccEEEEEecCChhhhccCCcc
Q 023497 40 PVCFPQFGNL-----------G-------LLEQHGFA---RNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRG 98 (281)
Q Consensus 40 Pv~fP~~G~~-----------~-------~~p~HGfa---R~~~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~ 98 (281)
.++.||.||+ + ...+||.. +.+.|+++... ..+|+|.+.+.+ ..++||++
T Consensus 65 a~iGr~anRI~~g~f~~~G~~y~L~~N~~~n~lHGg~~G~~~~~W~v~~~~--------~~~v~l~~~~~~-g~~GyPg~ 135 (342)
T PRK11055 65 ASVGRYANRIANSRFTLDGETYQLSPNQGGNQLHGGPEGFDKRRWQIVNQN--------DRQVTFSLSSPD-GDQGFPGN 135 (342)
T ss_pred ceeCCcCCcccCCEEEECCEEEEcccCCCCcccCCCCcccCCcEEEEEEcc--------CCEEEEEEECCC-cCCCCCeE
Confidence 3677888886 1 23589985 56899987652 457999987754 35799999
Q ss_pred eEEEEEEEEeC-CeeEEEEEEEeCCCCceeeeecCcceeecCC------CCeeEEEcCCCCccc--c--ccCcccc----
Q 023497 99 FELRLRISISP-GKLTLIPRVRNVDNKAFSFMFALRNYLSVSD------ISEVRVEGLETLDYF--D--YLMNKER---- 163 (281)
Q Consensus 99 f~l~~~~~L~~-~~L~~~l~v~N~g~~~~~f~~g~HpYF~v~~------~~~~~v~gl~~~~~~--d--~l~~~~~---- 163 (281)
++++++|+|.+ ++|+++++++ +++++||++++||||+++. +.+..+. +....|+ | .++.++.
T Consensus 136 l~~~vtY~L~~~~~l~i~~~a~--~d~~tp~nlt~H~YFnL~g~~~~~~i~~h~L~-i~a~~~~~~d~~~iPTG~~~~v~ 212 (342)
T PRK11055 136 LGATVTYRLTDDNRVSITYRAT--VDKPCPVNLTNHAYFNLDGAEEGSDVRNHKLQ-INADEYLPVDEGGIPNGGLKSVA 212 (342)
T ss_pred EEEEEEEEEcCCCeEEEEEEEE--cCCCeEEeccccceEECCCCCCCCCccceEEE-EecCCEEEECcccCccCcEeccC
Confidence 99999999986 5788887775 7999999999999999974 2222332 1222232 1 2332211
Q ss_pred -----cccc---Cce------EEeccCcceEEcCC-----C-CeEEEEeCCCCcEEEEEecCCCcEEEeCCcccccccCC
Q 023497 164 -----FTEQ---ADA------ITFDGEIDRVYLST-----P-TKIAIIDHEKKRTFELRKDGMPDSVVWNPWDKKAKALP 223 (281)
Q Consensus 164 -----~~~~---~~~------l~~~~~~D~vy~~~-----~-~~~~l~~~~~~~~i~i~~~~~~~~vvwnP~~~~~~~~~ 223 (281)
|.+. .+. ......+|++|... . ..+.+.++.++++|+|.++ .|.+|||++..-.. ..
T Consensus 213 ~t~~DFr~~~~l~~~~~~~~~~~~~~g~D~~fvl~~~~~~~~~~a~l~~~~sg~~l~v~t~-~p~lqvYT~n~~~~-~~- 289 (342)
T PRK11055 213 GTSFDFRQPKTIAQDFLADDDQQKVKGYDHAFLLQAKGDGKKPAAHLWSPDEKLQMKVYTT-APALQFYSGNFLAG-TP- 289 (342)
T ss_pred CCcccccCCcCcCcccccchhcccCCCcceEEEECCCCcccceeEEEEcCCCCeEEEEEcC-CCEEEEecCCccCC-cc-
Confidence 1000 000 11113689999531 1 1467888888999999976 89999999742110 00
Q ss_pred CCCC--CCCcceEEeccccc--------C--CCeEeCCCCEEEEEEEEEEE
Q 023497 224 DMGV--DGYKTMLCVDSAAI--------E--NPIVLKPFEEWRGRQELSTV 262 (281)
Q Consensus 224 d~~~--~~~~~~vCvEp~~~--------~--~~~~L~pge~~~~~~~i~~~ 262 (281)
...+ ......|||||+.. . +.++|.|||.++..+.+++.
T Consensus 290 ~~~g~~~~~~~gialE~q~~Pda~n~~~f~~~~~~L~pg~~y~~~t~y~f~ 340 (342)
T PRK11055 290 SRGGGPYADYAGLALESQFLPDSPNHPEWPQPDCILKPGEEYRSLTEYQFI 340 (342)
T ss_pred CCCCcEeCCCceEEEEcccCCCcccccCCCCCCeEECCCCEEEEEEEEEEE
Confidence 0111 12246899999974 1 38899999999999999874
No 16
>PTZ00485 aldolase 1-epimerase; Provisional
Probab=99.81 E-value=4.9e-18 Score=157.27 Aligned_cols=200 Identities=12% Similarity=0.079 Sum_probs=132.0
Q ss_pred cceeeeccCeEEeecCCCCCCCCCccEEEEEecCChhhhccCCcceEEEEEEEEe---CCeeEEE---EEEEeCCCCcee
Q 023497 54 QHGFARNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISIS---PGKLTLI---PRVRNVDNKAFS 127 (281)
Q Consensus 54 ~HGfaR~~~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~~~L~---~~~L~~~---l~v~N~g~~~~~ 127 (281)
.+||-+ +.|++...+ ..+..+|+|.+.+.+ ..++||+.++++++|+|. +++|+++ ++++|++++++|
T Consensus 106 ~~gf~~-~~W~v~~~~-----~~~~~~V~f~~~~~d-g~~GfPG~l~v~vtYtL~~~~~~~L~i~y~a~~~~n~~d~~Tp 178 (376)
T PTZ00485 106 DDAYHK-KHWGMKLIE-----TANVIGVRFNYTSPH-MENGFPGELVSKVTYSIERSKPNVLKTIYDSYIPETSPADATP 178 (376)
T ss_pred CCccce-eeeeEEEec-----cCCCcEEEEEEECCC-cCCCCCEEEEEEEEEEEecCCCCEEEEEEEEEeccccCCccce
Confidence 357775 999986432 123458999998743 468999999999999996 5889999 888999999999
Q ss_pred eeecCcceeecCC-----------------CCeeEEEcCCCCccc--c--ccCccc-------cc--ccc---CceE---
Q 023497 128 FMFALRNYLSVSD-----------------ISEVRVEGLETLDYF--D--YLMNKE-------RF--TEQ---ADAI--- 171 (281)
Q Consensus 128 f~~g~HpYF~v~~-----------------~~~~~v~gl~~~~~~--d--~l~~~~-------~~--~~~---~~~l--- 171 (281)
+++++|+||+++. +.+..+. +....++ | .++.++ .+ .+. .+.+
T Consensus 179 ~nltnH~YFNL~g~~~~~~~~~~~~~~~~~i~~h~L~-i~a~~~l~~de~~IPTG~i~~v~~t~fDfr~~~~ig~~~~~~ 257 (376)
T PTZ00485 179 VNIFNHAYWNLNGIPERNGKKNAVWVQPESVRNHWLR-VPASRVAEADRMAIPTGEFLSVEGTGLDFRQGRVIGDCIDDV 257 (376)
T ss_pred eeeccceeEEcCCCccccccccccccCCCcccceEEE-EecCcEEEeCcccCccCceeccCCCCccCcCCcccchhhhhh
Confidence 9999999999963 2222222 1122232 1 222221 11 000 0111
Q ss_pred -Ee---ccCcceEEcCCC-------CeEEEEeCCCCcEEEEEecCCCcEEEeCCcccccccCCCCCC--CCCcceEEecc
Q 023497 172 -TF---DGEIDRVYLSTP-------TKIAIIDHEKKRTFELRKDGMPDSVVWNPWDKKAKALPDMGV--DGYKTMLCVDS 238 (281)
Q Consensus 172 -~~---~~~~D~vy~~~~-------~~~~l~~~~~~~~i~i~~~~~~~~vvwnP~~~~~~~~~d~~~--~~~~~~vCvEp 238 (281)
.+ .+.+|++|.-.. ..+.+.++.+|++++|.++ .|.+|||+......... ...+ ......||+||
T Consensus 258 ~~~~~~~~G~Dh~fvl~~~~~~~~~~~a~l~~p~sg~~l~v~T~-~P~~qiYT~n~l~~~~~-~~~g~~~~~~~giclE~ 335 (376)
T PTZ00485 258 ALLDRDPCGYDHPLAIDGWEKGKLMLHAEAKSPVTNICMKVYST-FPCMWVYTANNKPLPAS-GGPGQRYARWTGMGLEP 335 (376)
T ss_pred hhhcccCCCCCcceEECCCCCccccEEEEEEcCCCCCEEEEEEC-CCEEEEECCCCCCcccc-CCCCcCcCCCCEEEEec
Confidence 01 136899985421 1367899999999999977 99999999753211001 1111 12236899999
Q ss_pred ccc---------CCCeEeCCCCE-EEEEEEEEEEe
Q 023497 239 AAI---------ENPIVLKPFEE-WRGRQELSTVS 263 (281)
Q Consensus 239 ~~~---------~~~~~L~pge~-~~~~~~i~~~~ 263 (281)
+.. .+.++|.|||. ++..+.+++.-
T Consensus 336 Q~~PDa~n~~~~fp~~vl~pge~~~~~~t~y~f~~ 370 (376)
T PTZ00485 336 QYFPDVANHYPKYPSCIVRRGERRFTETILNEFTV 370 (376)
T ss_pred cCCCCcccccCCCCCeEECCCCeEEEEEEEEEEEe
Confidence 974 35679999999 88777777743
No 17
>cd09023 Aldose_epim_Ec_c4013 Aldose 1-epimerase, similar to Escherichia coli c4013. Proteins, similar to Escherichia coli c4013, are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=99.77 E-value=2.5e-18 Score=154.68 Aligned_cols=197 Identities=15% Similarity=0.126 Sum_probs=128.3
Q ss_pred ccccCCC-----CCCccceeeeccCeEEeecCCCCCCCCCccEEEEEecCChhhhccCCcceEEEEEEEEeCCeeEEEEE
Q 023497 43 FPQFGNL-----GLLEQHGFARNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISPGKLTLIPR 117 (281)
Q Consensus 43 fP~~G~~-----~~~p~HGfaR~~~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~~~L~~~~L~~~l~ 117 (281)
++++|.. ...+.||++++.+|+++..... ++++..|++.....+....+|||.++.+++|+|..++|+++++
T Consensus 57 l~~~g~p~~~~~~~~~lHG~~~~~p~~~~~~~~~---~~~~~~v~l~~~~~~~~~~g~~~~l~~~i~~~l~~~~l~i~~~ 133 (284)
T cd09023 57 LDHIGHPEVDDGEEYPLHGRISNTPAELVGVEED---EEGDYEIEVSGEVREAALFGENLRLERTIETDLGSNEIRLEDR 133 (284)
T ss_pred ccccCCCCcCCCccccCcccccCCCcceEEEEec---cCCCeEEEEEEEEEEeeeecCceEEEEEEEEecCCceEEEEEE
Confidence 4565542 3578999999999999876420 1234446665554333457899999999999999999999999
Q ss_pred EEeCCCCceeeeecCcceeecCCCC-eeEEEcCCCCccc--c-ccCccc-cccccCceEEeccCcceEEcC-------CC
Q 023497 118 VRNVDNKAFSFMFALRNYLSVSDIS-EVRVEGLETLDYF--D-YLMNKE-RFTEQADAITFDGEIDRVYLS-------TP 185 (281)
Q Consensus 118 v~N~g~~~~~f~~g~HpYF~v~~~~-~~~v~gl~~~~~~--d-~l~~~~-~~~~~~~~l~~~~~~D~vy~~-------~~ 185 (281)
|+|.|+++||+++++|+||..+-.. +.++... ...+. | ...... .+..-... -....+.+|.. ..
T Consensus 134 VtN~g~~~~P~~~~~H~n~~~p~l~~~~~l~~p-~~~~~p~~~~~~~~~~~~~~~~~p--~~~~~e~v~~~~~~~d~~g~ 210 (284)
T cd09023 134 VTNEGFRPTPHMLLYHVNFGYPLLDEGARLEIP-SKEVTPRDAHAAEGLASWNTYLAP--TPGFAEQVYFHEPAADEDGR 210 (284)
T ss_pred EEeCCCCCCcceEEeeEEcCCcccCCCCEEEec-ccccccCChhhcccccccccccCC--CCCCccEEEEEeccccCCCc
Confidence 9999999999999999999886322 3444321 11111 1 110000 00000000 01112233321 12
Q ss_pred CeEEEEeCCCCcEEEEEec--CCCcEEEeCCcccccccCCCCCCCCCcceEEeccccc-----------CCCeEeCCCCE
Q 023497 186 TKIAIIDHEKKRTFELRKD--GMPDSVVWNPWDKKAKALPDMGVDGYKTMLCVDSAAI-----------ENPIVLKPFEE 252 (281)
Q Consensus 186 ~~~~l~~~~~~~~i~i~~~--~~~~~vvwnP~~~~~~~~~d~~~~~~~~~vCvEp~~~-----------~~~~~L~pge~ 252 (281)
..+.|.++..+..+.|..+ .+|++++|+.... -...+||||++. .+++.|+|||+
T Consensus 211 ~~~~l~~~~~g~~~~l~~~~~~~p~~~~W~~~~~------------~~y~lalEP~T~~p~~~~~~~~~g~l~~L~PGEs 278 (284)
T cd09023 211 APAALVNPRLGLGVEVRFDTDTLPYLTQWKNTGA------------GAYVLGLEPATNFPNGRAFEREQGELPTLAPGES 278 (284)
T ss_pred eeEEEEcCCCCcEEEEEEehhhCCHHHHHhccCC------------CccEEEEccccCCCcchHHHHHCCCcceECCCCe
Confidence 3688888877777777754 5999999997421 134677999985 47999999999
Q ss_pred EEEEE
Q 023497 253 WRGRQ 257 (281)
Q Consensus 253 ~~~~~ 257 (281)
++++.
T Consensus 279 ~~~~l 283 (284)
T cd09023 279 RSYRL 283 (284)
T ss_pred EEEee
Confidence 88764
No 18
>KOG1604 consensus Predicted mutarotase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=5.5e-12 Score=112.50 Aligned_cols=194 Identities=15% Similarity=0.275 Sum_probs=129.5
Q ss_pred cceeeeccCeEEeecCCCCCCCCCccEEEEEecCChhhhccCCcceEEEEEEEEeC-CeeEEEEEEEeCCCCceeeeecC
Q 023497 54 QHGFARNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISP-GKLTLIPRVRNVDNKAFSFMFAL 132 (281)
Q Consensus 54 ~HGfaR~~~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~~~L~~-~~L~~~l~v~N~g~~~~~f~~g~ 132 (281)
.-||-+ ..|++..... ...++|...+ ++..++||.+.+++++|+|.. ++|.+.+..+=. +++.|.+++.
T Consensus 113 ~~gf~~-~~w~v~~~~~-------~~~i~f~~~s-~dg~eg~PG~l~V~vtYtLn~~n~l~i~~~A~~~-~~~TPiNLtn 182 (353)
T KOG1604|consen 113 IKGFDK-VIWEVVKHQP-------DGVIVFSHLS-PDGDEGFPGDLKVTVTYTLNVANRLLIMMEATAL-DKATPINLTN 182 (353)
T ss_pred cccccc-eEEEEEEecC-------CCEEEEEEEC-CCCCCCCCccEEEEEEEEEccCCeeeeeehhhcc-CCCcceeecc
Confidence 446766 8899998752 2226787766 556789999999999999988 888888877533 8999999999
Q ss_pred cceeecCC-----CC--eeEEEcCCCCccccc-cCccc-------ccc------ccCceEEec--cCcceEEcCCC----
Q 023497 133 RNYLSVSD-----IS--EVRVEGLETLDYFDY-LMNKE-------RFT------EQADAITFD--GEIDRVYLSTP---- 185 (281)
Q Consensus 133 HpYF~v~~-----~~--~~~v~gl~~~~~~d~-l~~~~-------~~~------~~~~~l~~~--~~~D~vy~~~~---- 185 (281)
|+||++.. +. .+++.+-+-...-|. ++.++ .|. ..+..-.|. ...|..|....
T Consensus 183 HsYfNL~g~~s~~I~~heI~i~a~~~~evd~~~iPTG~I~~v~~t~fD~r~p~~lgd~~~~~~~i~g~d~n~~~~~~~~~ 262 (353)
T KOG1604|consen 183 HSYFNLAGHNSGGIEGHEIQIEASKITEVDDTLIPTGEITPVKGTTFDFRKPTVLGDRIKQFECIVGYDINYVLDGSVPP 262 (353)
T ss_pred ceeEeccCCCCCCccceEEEEeecccEecCCccccccceEeccCccccccCCeeccccccccccccCCCcceEEccCCCC
Confidence 99999984 22 233433211111111 22111 110 001111233 35677774221
Q ss_pred ----CeEEEEeCCCCcEEEEEecCCCcEEEeCCcccccccCCCCCC-----CCCcceEEeccccc--------CCCeEeC
Q 023497 186 ----TKIAIIDHEKKRTFELRKDGMPDSVVWNPWDKKAKALPDMGV-----DGYKTMLCVDSAAI--------ENPIVLK 248 (281)
Q Consensus 186 ----~~~~l~~~~~~~~i~i~~~~~~~~vvwnP~~~~~~~~~d~~~-----~~~~~~vCvEp~~~--------~~~~~L~ 248 (281)
..+.+.++.++|.++|.+. .|-+++|+-. -|.|..+ .....++|+|++.. ...+.|+
T Consensus 263 ~~l~~v~k~~hp~Sgr~lEv~Tn-qPgvqfYTgn-----~~~~~~gk~g~~y~k~g~~cletq~~pda~n~~~fp~v~l~ 336 (353)
T KOG1604|consen 263 NKLRKVAKAVHPKSGRKLEVSTN-QPGVQFYTGN-----FLPDIKGKKGAVYPKHGGLCLETQYFPDAVNHPNFPSVILR 336 (353)
T ss_pred cccEEEEEEEcCccCcEEEEEeC-CCcEEEEecc-----ccccccCCCceEeeccceEEeecccCccccccCCCCceEec
Confidence 2467889999999999976 8999999942 2333332 12346999999864 5789999
Q ss_pred CCCEEEEEEEEEEEe
Q 023497 249 PFEEWRGRQELSTVS 263 (281)
Q Consensus 249 pge~~~~~~~i~~~~ 263 (281)
|||++...+.+++..
T Consensus 337 pGE~Y~h~~~y~Fsv 351 (353)
T KOG1604|consen 337 PGETYTHETVYKFSV 351 (353)
T ss_pred CCCeeeeEEEEEEec
Confidence 999999999998864
No 19
>cd09269 deoxyribose_mutarotase deoxyribose mutarotase_like. Salmonella enterica serovar Typhi DeoM (earlier named as DeoX) is a mutarotase with high specificity for deoxyribose. It is encoded by one of four genes beonging to the deoK operon. This operon has also been found in Escherichia coli where it is more common in pathogenic than in commensal strains and is associated with pathogenicity. It has been found on a pathogenicity island from a human blood isolate AL863 and confers the ability to use deoxyribose as a carbon source; deoxyribose is not fermented by non-pathogenic E.coli K-12. Proteins in this family are members of the aldose-1-epimerase superfamily. Aldose 1-epimerases, or mutarotases, are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechani
Probab=99.22 E-value=3e-10 Score=102.44 Aligned_cols=188 Identities=11% Similarity=0.105 Sum_probs=108.5
Q ss_pred CCccceeeeccCeEEeecCCCCCCCCCccEEEEEecCChhhhccCCcceEEEEEEEEeC--CeeEEEEEEEeCCCCceee
Q 023497 51 LLEQHGFARNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISP--GKLTLIPRVRNVDNKAFSF 128 (281)
Q Consensus 51 ~~p~HGfaR~~~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~~~L~~--~~L~~~l~v~N~g~~~~~f 128 (281)
.+|.||=..+.+|+..-.... .+++...+++.-.. .....||++|+++.+|+|.. +.|+|+++|+|.++.|||+
T Consensus 61 ~~~LHG~~~~~p~~~~w~~~~--~d~~~~~l~l~g~~--~~~~~fg~~y~a~~~i~L~~g~~~l~i~~~VtN~g~~p~p~ 136 (293)
T cd09269 61 THPLHGEFPCAPMDEAWLEVG--EDASGDYLALTGEY--EYVQGFGHHYLAQPSVTLRAGSALFDIGMDVTNLSAQPMPL 136 (293)
T ss_pred ccCCcCCcCCCCccceEEEEE--ecCCCCEEEEEEEE--EeeeccCccEEEEEEEEEeCCCCEEEEEEEEEECCCCCChh
Confidence 578999955555544311100 01123344444332 22368999999999999998 8999999999999999999
Q ss_pred eecCcceeecCCCCeeEEEcCCC---------------Cccc---cccCcc-ccccccCceEEec--cCcceEEcCC---
Q 023497 129 MFALRNYLSVSDISEVRVEGLET---------------LDYF---DYLMNK-ERFTEQADAITFD--GEIDRVYLST--- 184 (281)
Q Consensus 129 ~~g~HpYF~v~~~~~~~v~gl~~---------------~~~~---d~l~~~-~~~~~~~~~l~~~--~~~D~vy~~~--- 184 (281)
++++|+||....-.++...-+.. ..+. +.+..+ ... +.+.-. ..-..||...
T Consensus 137 ~~~~H~nfg~~~garl~~p~~~~~~~~~~~~p~~v~p~~~w~~~~~~~~~~~~~~----~~~~~P~~~~~E~V~~~~~~~ 212 (293)
T cd09269 137 MYMCHMNYAYVEGARIVQNLPDEAFVLRRSVPAHVKPTPAWLAYNEALVADPARG----DVLDKPDLYDPEIVFFADDLG 212 (293)
T ss_pred hEecccccCCCCCCEEEccCCcccceeeecccCccCCchhhccchHHHhhCchhh----hhccCCCCCCccEEEEeeccc
Confidence 99999999874322222110000 0110 000000 000 000000 0112333211
Q ss_pred ----CCeEEEEeCCCCcEEEEE--ecCCCcEEEeCCcccccccCCCCCCCCCcceEEe-ccccc-----------CCCeE
Q 023497 185 ----PTKIAIIDHEKKRTFELR--KDGMPDSVVWNPWDKKAKALPDMGVDGYKTMLCV-DSAAI-----------ENPIV 246 (281)
Q Consensus 185 ----~~~~~l~~~~~~~~i~i~--~~~~~~~vvwnP~~~~~~~~~d~~~~~~~~~vCv-Ep~~~-----------~~~~~ 246 (281)
...+.|.+++++ .+.+. ++.+|++..|--... + +.-..+ ||++. ..++.
T Consensus 213 ~~~~~~~~~l~n~~g~-~~~~~f~~~~lP~~~~W~~~~~----------~--~~v~~~~~PaT~~p~g~~~ar~~G~l~~ 279 (293)
T cd09269 213 KYTGWAHFMMVHPDGD-AFYTRFSTAEFPYATRWILYNG----------D--QQVAAFALPATCRPEGYLAAKEAGTLRT 279 (293)
T ss_pred ccCCcEEEEEECCCCC-EEEEEEchhhCChhheehhcCC----------C--cceEEEEccCCCCcCChHHHHHCCCcce
Confidence 136778877654 66665 467999999984321 1 112333 48874 36889
Q ss_pred eCCCCEEEEEEEE
Q 023497 247 LKPFEEWRGRQEL 259 (281)
Q Consensus 247 L~pge~~~~~~~i 259 (281)
|+|||+.+++.++
T Consensus 280 L~pGe~~~f~l~~ 292 (293)
T cd09269 280 LAPGETRRFSVTT 292 (293)
T ss_pred eCCCCeEEEEEec
Confidence 9999999887653
No 20
>PF14486 DUF4432: Domain of unknown function (DUF4432); PDB: 3TY1_A.
Probab=98.82 E-value=4.5e-08 Score=88.85 Aligned_cols=188 Identities=15% Similarity=0.187 Sum_probs=102.0
Q ss_pred CccceeeeccCeEEeecCCCCCCCCCccEEEEEecCChhhhccCCcceEEEEEEEE--eCCeeEEEEEEEeCCCCceeee
Q 023497 52 LEQHGFARNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISI--SPGKLTLIPRVRNVDNKAFSFM 129 (281)
Q Consensus 52 ~p~HGfaR~~~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~~~L--~~~~L~~~l~v~N~g~~~~~f~ 129 (281)
+|.||=..+.+|+....+. .+++...+.++-.-.+ ...|-..++++=++++ +.+.++++.+|+|.+..|+|+.
T Consensus 86 ~~LHG~i~~~Pa~~v~~~~---~~~~~~~i~v~G~v~~--~~~fg~~l~l~r~i~~~~g~~~i~i~d~VtN~~~~p~p~m 160 (302)
T PF14486_consen 86 YPLHGRISNTPAEHVWLEI---WDGDGYEIEVSGEVRE--AAGFGENLRLERTIRLRAGSNTIRIEDRVTNLGFQPMPLM 160 (302)
T ss_dssp E-TTBSGGGS--SEEEEEE---ESSTT--EEEEEEEEE--EETTTEEEEEEEEEEE-TT-SEEEEEEEEEE-SSS-EEEE
T ss_pred ccccccccCCCcceEEEEE---ecCCCcEEEEEEEEEE--EEeccCcEEEEEEEEEECCCcEEEEEEEEEECCCCCchhH
Confidence 7899999999997665532 0112334444322212 2445566777777776 4488999999999999999999
Q ss_pred ecCcceeecCCC-CeeEEEcCCCCcc---ccccCcc-ccccccCceEEe--ccCcceEEcC-----CCC--eEEEEeCCC
Q 023497 130 FALRNYLSVSDI-SEVRVEGLETLDY---FDYLMNK-ERFTEQADAITF--DGEIDRVYLS-----TPT--KIAIIDHEK 195 (281)
Q Consensus 130 ~g~HpYF~v~~~-~~~~v~gl~~~~~---~d~l~~~-~~~~~~~~~l~~--~~~~D~vy~~-----~~~--~~~l~~~~~ 195 (281)
+..|.=|..+-. +..++... ...+ .+....+ ..+ ..+.- .+..+.||.. ..+ .+.|..++.
T Consensus 161 ~lyH~N~G~pll~eg~ri~~p-~~~~~~~~~~a~~~~~~~----~~~~~P~~~~~E~Vy~~~~~~d~~G~~~~~l~n~~~ 235 (302)
T PF14486_consen 161 YLYHMNFGYPLLDEGARIVAP-TKEVTPRDDRAAEGIADW----DRMPAPQPGFPEQVYFHDLLADEDGWAHAALVNPDG 235 (302)
T ss_dssp EEEEEEE-TTT-STT-EEE---EEEEEESSGGGGGGSTTT----TB---S-TT---EEEEEEE---TTSEEEEEEE-SSS
T ss_pred HhhhhccCccccCCCcEEEcC-cccccCCchhhhcCCccc----eecCCCCCCCCcEEEEecccccCCCcEEEEEECCCC
Confidence 999999998832 22344311 1111 1111110 000 00000 1122344421 122 477888887
Q ss_pred CcEEEEEe--cCCCcEEEeCCcccccccCCCCCCCCCcceEEeccccc-----------CCCeEeCCCCEEEEEEEEEE
Q 023497 196 KRTFELRK--DGMPDSVVWNPWDKKAKALPDMGVDGYKTMLCVDSAAI-----------ENPIVLKPFEEWRGRQELST 261 (281)
Q Consensus 196 ~~~i~i~~--~~~~~~vvwnP~~~~~~~~~d~~~~~~~~~vCvEp~~~-----------~~~~~L~pge~~~~~~~i~~ 261 (281)
+..+.|+. +.+|++..|-.... + .--++|||++. ..+..|+|||+.+.++++++
T Consensus 236 g~g~~v~f~~~~lP~~~~Wk~~~~----------~--~yv~gLEP~T~~p~g~~~~~~~G~l~~L~pge~~~~~l~~~v 302 (302)
T PF14486_consen 236 GLGFEVRFDTSQLPYLTQWKNYGG----------G--EYVLGLEPATCRPEGRAAAREAGTLPMLAPGESREFSLEFGV 302 (302)
T ss_dssp S-EEEEEEETTTS-EEEEEEEES-----------T---EEEEEEEESS-SS-HHHHHHTT--EEE-TT-EEEEEEEEE-
T ss_pred CcEEEEEEchHHCChhHhheeCCC----------C--EeEEEEecccCCCCCHHHHHhCCCcceECCCCeEEEEEEecC
Confidence 78888774 57999999987532 1 34688999985 46889999999999988864
No 21
>PF14315 DUF4380: Domain of unknown function (DUF4380)
Probab=88.63 E-value=17 Score=32.40 Aligned_cols=47 Identities=13% Similarity=0.281 Sum_probs=34.9
Q ss_pred ccEEEEEecCChhhhccCCcceEEEEEEEEeCCe--eEEEEEEEeCCCCceeeee
Q 023497 78 QSTVDLILKSTEEDIKAWPRGFELRLRISISPGK--LTLIPRVRNVDNKAFSFMF 130 (281)
Q Consensus 78 ~~~v~l~l~~~~~~~~~~P~~f~l~~~~~L~~~~--L~~~l~v~N~g~~~~~f~~ 130 (281)
...|+|+-..++. ..++++.+|+|.+++ ++++.+++|.++.++++.+
T Consensus 96 ~~~v~L~s~~~~~------tgiq~~~~i~l~~~~~~i~v~~~i~N~~~~~~~~a~ 144 (274)
T PF14315_consen 96 DDGVRLTSPPSPK------TGIQKERTITLDADRPSIEVTHRITNIGDWPVEWAP 144 (274)
T ss_pred CCEEEEecCCCCc------cCcEEEEEEEECCCCCEEEEEEEEEeCCCCcceeee
Confidence 4556666544332 357899999998865 9999999999999876544
No 22
>PF09095 DUF1926: Domain of unknown function (DUF1926); InterPro: IPR015179 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents a domain found in prokaryotic alpha-amylase (3.2.1.1 from EC) and 4-alpha-glucanotransferase (2.4.1.25 from EC). This domain adopts a beta-sandwich fold, in which two layers of anti-parallel beta-sheets are arranged in a nearly parallel fashion. The exact function of this domain is, as yet, unknown, however it has been proposed that it may play a role in transglycosylation reactions []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 1K1X_B 1K1W_A 1K1Y_A.
Probab=86.64 E-value=12 Score=33.52 Aligned_cols=154 Identities=15% Similarity=0.192 Sum_probs=69.6
Q ss_pred ccCeEEeecCCCCCCCCCccEEEEEecCChhhhccCCcceEEEEEEEEeCCeeEEEEEEEeCCCCceeeeecCcceeec-
Q 023497 60 NRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALRNYLSV- 138 (281)
Q Consensus 60 ~~~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~~~L~~~~L~~~l~v~N~g~~~~~f~~g~HpYF~v- 138 (281)
+.+|++.... ..|+|+-... ..+....++-+|+|.+++|.++|+++ .++.+..+-+|.=--|+.
T Consensus 123 ~~~y~~~~~~---------~~v~f~r~G~-----~~~~~~~l~K~y~l~~~~l~V~Y~l~-~~~~~~~~~f~vEiNla~~ 187 (278)
T PF09095_consen 123 NQPYELEVNR---------DEVTFERDGG-----VEGHPITLEKRYRLTKNGLQVDYRLT-ESPEPISLLFGVEINLAML 187 (278)
T ss_dssp SS--EEEEES---------SEEEEEEEEE-----ESEEEEEEEEEEEEETTEEEEEEEEE--ESS---EEEEEEEEE---
T ss_pred CCceEEEecC---------CceEEEEecc-----cccCceEEEEEEEEcCCEEEEEEEEE-ECCCCcceEEEEEEeeccc
Confidence 4677776652 2266654321 15788999999999999999999999 555554444333222222
Q ss_pred -CCCCeeEEEcCCCCccccccCccccccccCceEEeccCcceEEcCCCCeEEEEeCCCCcEEEEEecCCCcEEEeCCccc
Q 023497 139 -SDISEVRVEGLETLDYFDYLMNKERFTEQADAITFDGEIDRVYLSTPTKIAIIDHEKKRTFELRKDGMPDSVVWNPWDK 217 (281)
Q Consensus 139 -~~~~~~~v~gl~~~~~~d~l~~~~~~~~~~~~l~~~~~~D~vy~~~~~~~~l~~~~~~~~i~i~~~~~~~~vvwnP~~~ 217 (281)
.+..+..+ + . . .+. ....... ...+.+.|...+..|+|+.+ ..+-+|.-+.+
T Consensus 188 ~~~~~~~~~--------~--~-~--~~~---~~~~~~~---------~~~i~l~D~~~~~~i~l~~~--~~~~~~~~Pi~ 240 (278)
T PF09095_consen 188 SGDAPDRYF--------I--I-G--SLG---EPIEEFE---------VKEIELEDEWLGGDITLEFS--RPAELWAFPIE 240 (278)
T ss_dssp -------------------------SS-------EEEE---------EEEEEEEETTTTEEEEEEEE--EEEEEEEEEEE
T ss_pred ccccccccc--------c--c-c--ccC---CCccccc---------eEEEEEecCccCceEEEEEC--CCceEEEeeEE
Confidence 11111111 1 0 0 000 0011000 12566777766777777753 23445554322
Q ss_pred ccccCCCCCCCCCcceEEecccccCCCeEeCCCCEEEEEEEE
Q 023497 218 KAKALPDMGVDGYKTMLCVDSAAIENPIVLKPFEEWRGRQEL 259 (281)
Q Consensus 218 ~~~~~~d~~~~~~~~~vCvEp~~~~~~~~L~pge~~~~~~~i 259 (281)
. .+-...+-+.-...+|+-+.- .+.|.||++|+.+.++
T Consensus 241 T-vSqSE~Gfe~i~Qg~~~~~~~---~v~l~~~e~~~~ti~f 278 (278)
T PF09095_consen 241 T-VSQSEKGFEKIYQGVALMFLW---PVSLNPGEEWKTTIKF 278 (278)
T ss_dssp E-EEEETTEEEEEEEEEEEEEEE---EE----SSEEEEEEEE
T ss_pred e-EEcccCCceEEecceEEEEEE---EEecccCcEEEEEEEC
Confidence 1 110000001112345555533 5778999999887653
No 23
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=84.38 E-value=1.3 Score=33.21 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=25.1
Q ss_pred EEEEEeCCeeEEEEEEEeCCCCceeeeecCcceee
Q 023497 103 LRISISPGKLTLIPRVRNVDNKAFSFMFALRNYLS 137 (281)
Q Consensus 103 ~~~~L~~~~L~~~l~v~N~g~~~~~f~~g~HpYF~ 137 (281)
=.++|.....+++++|.|+||. |.+.|-|-+|.
T Consensus 11 g~IelN~gr~~~~i~V~NtGDR--PIQVGSHfHF~ 43 (106)
T COG0832 11 GDIELNAGRPTVTIEVANTGDR--PIQVGSHFHFF 43 (106)
T ss_pred ccEEEeCCCcceEEEEeecCCC--ceEeecceeeh
Confidence 3567777778899999999999 55566666664
No 24
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=82.94 E-value=1.5 Score=32.89 Aligned_cols=31 Identities=13% Similarity=0.237 Sum_probs=22.1
Q ss_pred EEEeCCeeEEEEEEEeCCCCceeeeecCcceee
Q 023497 105 ISISPGKLTLIPRVRNVDNKAFSFMFALRNYLS 137 (281)
Q Consensus 105 ~~L~~~~L~~~l~v~N~g~~~~~f~~g~HpYF~ 137 (281)
++|..+.=+++++|+|+||. |.+.|-|.+|.
T Consensus 12 I~lN~gr~~~~l~V~N~GDR--PIQVGSH~HF~ 42 (100)
T PF00699_consen 12 IELNAGRERITLEVTNTGDR--PIQVGSHYHFF 42 (100)
T ss_dssp EETTTTSEEEEEEEEE-SSS---EEEETTS-GG
T ss_pred EEecCCCcEEEEEEEeCCCc--ceEEccccCHH
Confidence 56666778899999999999 55667777665
No 25
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=82.76 E-value=1.7 Score=32.60 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=24.3
Q ss_pred EEEeCCeeEEEEEEEeCCCCceeeeecCcceee
Q 023497 105 ISISPGKLTLIPRVRNVDNKAFSFMFALRNYLS 137 (281)
Q Consensus 105 ~~L~~~~L~~~l~v~N~g~~~~~f~~g~HpYF~ 137 (281)
++|..+.=+++++|+|+||. |.+.|-|-.|-
T Consensus 13 I~ln~gr~~~~l~V~NtGDR--PIQVGSHyHF~ 43 (101)
T TIGR00192 13 ITINEGRKTVSVKVKNTGDR--PIQVGSHFHFF 43 (101)
T ss_pred EEeCCCCcEEEEEEEeCCCc--ceEEccccchh
Confidence 56777777899999999999 55667777664
No 26
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=82.54 E-value=1.8 Score=32.62 Aligned_cols=32 Identities=13% Similarity=0.279 Sum_probs=24.5
Q ss_pred EEEEeCCeeEEEEEEEeCCCCceeeeecCcceee
Q 023497 104 RISISPGKLTLIPRVRNVDNKAFSFMFALRNYLS 137 (281)
Q Consensus 104 ~~~L~~~~L~~~l~v~N~g~~~~~f~~g~HpYF~ 137 (281)
.++|..+.=+++++|+|+||. |.+.|-|.+|-
T Consensus 12 ~I~lN~gr~~~~l~V~NtGDR--pIQVGSH~HF~ 43 (101)
T cd00407 12 DIELNAGREAVTLKVKNTGDR--PIQVGSHYHFF 43 (101)
T ss_pred CeEeCCCCCEEEEEEEeCCCc--ceEEccccchh
Confidence 356767777899999999999 55667777664
No 27
>PRK13203 ureB urease subunit beta; Reviewed
Probab=82.43 E-value=1.8 Score=32.58 Aligned_cols=31 Identities=16% Similarity=0.245 Sum_probs=23.8
Q ss_pred EEEeCCeeEEEEEEEeCCCCceeeeecCcceee
Q 023497 105 ISISPGKLTLIPRVRNVDNKAFSFMFALRNYLS 137 (281)
Q Consensus 105 ~~L~~~~L~~~l~v~N~g~~~~~f~~g~HpYF~ 137 (281)
++|..+.=+++++|+|+||. |.+.|-|-.|-
T Consensus 13 I~ln~gr~~~~l~V~NtGDR--PIQVGSH~HF~ 43 (102)
T PRK13203 13 IELNAGRETVTLTVANTGDR--PIQVGSHYHFF 43 (102)
T ss_pred EEeCCCCCEEEEEEEeCCCC--ceEEccccchh
Confidence 56766677899999999999 55666676664
No 28
>PRK13202 ureB urease subunit beta; Reviewed
Probab=78.72 E-value=3 Score=31.53 Aligned_cols=31 Identities=16% Similarity=0.199 Sum_probs=23.2
Q ss_pred EEEeCCe-eEEEEEEEeCCCCceeeeecCcceee
Q 023497 105 ISISPGK-LTLIPRVRNVDNKAFSFMFALRNYLS 137 (281)
Q Consensus 105 ~~L~~~~-L~~~l~v~N~g~~~~~f~~g~HpYF~ 137 (281)
++|..+. =+++++|+|+||. |.+.|-|..|.
T Consensus 13 I~ln~grr~~~~l~V~NtGDR--PIQVGSHyHF~ 44 (104)
T PRK13202 13 IEMNAAALSRLQMRIINAGDR--PVQVGSHVHLP 44 (104)
T ss_pred EEeCCCCCceEEEEEEeCCCC--ceEEccccchh
Confidence 5666663 5789999999999 55667777664
No 29
>PRK13201 ureB urease subunit beta; Reviewed
Probab=78.11 E-value=2.9 Score=33.03 Aligned_cols=31 Identities=10% Similarity=0.116 Sum_probs=23.8
Q ss_pred EEEeCCeeEEEEEEEeCCCCceeeeecCcceee
Q 023497 105 ISISPGKLTLIPRVRNVDNKAFSFMFALRNYLS 137 (281)
Q Consensus 105 ~~L~~~~L~~~l~v~N~g~~~~~f~~g~HpYF~ 137 (281)
++|..+.=+++++|+|+||. |.+.|-|-+|-
T Consensus 13 I~lN~gr~~~~l~V~NtGDR--PIQVGSHyHF~ 43 (136)
T PRK13201 13 VEINNHHPETVIEVENTGDR--PIQVGSHFHFY 43 (136)
T ss_pred eEeCCCCCEEEEEEEeCCCc--ceEeccccchh
Confidence 56766677899999999999 55666676664
No 30
>PRK13205 ureB urease subunit beta; Reviewed
Probab=77.06 E-value=3.1 Score=33.57 Aligned_cols=31 Identities=6% Similarity=0.087 Sum_probs=24.2
Q ss_pred EEEeCCeeEEEEEEEeCCCCceeeeecCcceee
Q 023497 105 ISISPGKLTLIPRVRNVDNKAFSFMFALRNYLS 137 (281)
Q Consensus 105 ~~L~~~~L~~~l~v~N~g~~~~~f~~g~HpYF~ 137 (281)
+.|..+.=+++++|+|+||. |.+.|-|.+|.
T Consensus 13 IelN~GR~~i~L~V~NtGDR--PIQVGSHyHF~ 43 (162)
T PRK13205 13 LTGNVGREAKTIEIINTGDR--PVQIGSHFHFA 43 (162)
T ss_pred eEeCCCCcEEEEEEEeCCCC--ceEeccccchh
Confidence 56767777899999999999 55666776664
No 31
>PRK13198 ureB urease subunit beta; Reviewed
Probab=76.81 E-value=3.2 Score=33.54 Aligned_cols=32 Identities=16% Similarity=0.159 Sum_probs=25.1
Q ss_pred EEEEeCCeeEEEEEEEeCCCCceeeeecCcceee
Q 023497 104 RISISPGKLTLIPRVRNVDNKAFSFMFALRNYLS 137 (281)
Q Consensus 104 ~~~L~~~~L~~~l~v~N~g~~~~~f~~g~HpYF~ 137 (281)
.++|..+.=+++++|+|+||. |.+.|-|..|-
T Consensus 40 ~I~lN~gr~~~~l~V~NtGDR--PIQVGSHyHF~ 71 (158)
T PRK13198 40 PITFNENKPVTKVKVRNTGDR--PIQVGSHFHFF 71 (158)
T ss_pred CeEeCCCCcEEEEEEEeCCCC--ceEeccccchh
Confidence 477877778899999999999 55666676664
No 32
>PRK13204 ureB urease subunit beta; Reviewed
Probab=76.76 E-value=3.2 Score=33.55 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=25.0
Q ss_pred EEEEeCCeeEEEEEEEeCCCCceeeeecCcceee
Q 023497 104 RISISPGKLTLIPRVRNVDNKAFSFMFALRNYLS 137 (281)
Q Consensus 104 ~~~L~~~~L~~~l~v~N~g~~~~~f~~g~HpYF~ 137 (281)
.++|..+.=.++++|+|+||. |.+.|-|..|-
T Consensus 35 ~I~lN~gr~~~~l~V~NtGDR--PIQVGSHyHF~ 66 (159)
T PRK13204 35 PIEINQGRPRTTLTVRNTGDR--PIQIGSHFHFF 66 (159)
T ss_pred CeEeCCCCcEEEEEEEeCCCC--ceEeccccchh
Confidence 467877778899999999999 55666676664
No 33
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=66.71 E-value=6.6 Score=33.36 Aligned_cols=43 Identities=12% Similarity=0.155 Sum_probs=30.2
Q ss_pred ccCCcceEE-EEEEEEeCCeeEEEEEEEeCCCCceeeeecCcceee
Q 023497 93 KAWPRGFEL-RLRISISPGKLTLIPRVRNVDNKAFSFMFALRNYLS 137 (281)
Q Consensus 93 ~~~P~~f~l-~~~~~L~~~~L~~~l~v~N~g~~~~~f~~g~HpYF~ 137 (281)
..+|..+.+ .=.+.|..+.=+++++|+|+||. |.+.|-|..|-
T Consensus 109 al~PGei~~~~~~I~lN~gr~~~~l~V~NtGDR--PIQVGSHyHF~ 152 (208)
T PRK13192 109 ALYPGEILPGDGEIELNAGRPAVTLDVTNTGDR--PIQVGSHFHFF 152 (208)
T ss_pred ccCCCEEEcCCCCeeeCCCCCEEEEEEEeCCCC--ceeeccccchh
Confidence 345665443 23477877778899999999999 55666676664
No 34
>PRK13986 urease subunit alpha; Provisional
Probab=64.04 E-value=7.5 Score=33.44 Aligned_cols=42 Identities=21% Similarity=0.251 Sum_probs=28.8
Q ss_pred cCCcceEE-EEEEEEeCCeeEEEEEEEeCCCCceeeeecCcceee
Q 023497 94 AWPRGFEL-RLRISISPGKLTLIPRVRNVDNKAFSFMFALRNYLS 137 (281)
Q Consensus 94 ~~P~~f~l-~~~~~L~~~~L~~~l~v~N~g~~~~~f~~g~HpYF~ 137 (281)
.-|..+.+ .=.++|..+.=+++++|+|+||. |.+.|-|.+|-
T Consensus 106 ~~PGe~~~~~~~I~lN~gr~~~~l~V~NtGDR--PIQVGSHyHF~ 148 (225)
T PRK13986 106 LVPGELFLKDEDITINAGKKAVSVKVKNVGDR--PVQVGSHFHFF 148 (225)
T ss_pred CCCceEecCCCCeecCCCCcEEEEEEEeCCCC--ceeeccccchh
Confidence 34544332 23467777778899999999999 55666776664
No 35
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=60.32 E-value=11 Score=34.96 Aligned_cols=29 Identities=14% Similarity=0.108 Sum_probs=24.0
Q ss_pred EEEEEEEeCCeeEEEEEEEeCCCCceeee
Q 023497 101 LRLRISISPGKLTLIPRVRNVDNKAFSFM 129 (281)
Q Consensus 101 l~~~~~L~~~~L~~~l~v~N~g~~~~~f~ 129 (281)
...+|++-+++|+++++|+|.|++|..++
T Consensus 254 ~~A~Y~vpgR~l~~~l~VtN~g~~pv~Lg 282 (381)
T PF04744_consen 254 TDATYRVPGRTLTMTLTVTNNGDSPVRLG 282 (381)
T ss_dssp EEEEEESSSSEEEEEEEEEEESSS-BEEE
T ss_pred eccEEecCCcEEEEEEEEEcCCCCceEee
Confidence 45689998999999999999999987544
No 36
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=57.16 E-value=25 Score=25.50 Aligned_cols=39 Identities=23% Similarity=0.238 Sum_probs=27.9
Q ss_pred CcceEEEEEEEEeCCeeEEEEEEEeCCCCceeeeecCccee
Q 023497 96 PRGFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALRNYL 136 (281)
Q Consensus 96 P~~f~l~~~~~L~~~~L~~~l~v~N~g~~~~~f~~g~HpYF 136 (281)
|+.++++..|.-... .+.|++.|.|.++..|++--+.|-
T Consensus 6 ~~~~~v~~~~~~~~g--~l~l~l~N~g~~~~~~~v~~~~y~ 44 (89)
T PF05506_consen 6 PYAPEVTARYDPATG--NLRLTLSNPGSAAVTFTVYDNAYG 44 (89)
T ss_pred CCCCEEEEEEECCCC--EEEEEEEeCCCCcEEEEEEeCCcC
Confidence 555666666555434 666678999999999998887663
No 37
>PF14059 DUF4251: Domain of unknown function (DUF4251); PDB: 3FYF_B.
Probab=53.54 E-value=1.1e+02 Score=24.21 Aligned_cols=79 Identities=15% Similarity=0.295 Sum_probs=37.8
Q ss_pred CcC-CcceEccccCCCCCCccce----e---eeccCeEEeecCCCCCCCCCccEEEEEecCChhhhccCCcceEEEEEEE
Q 023497 35 IRG-GIPVCFPQFGNLGLLEQHG----F---ARNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRIS 106 (281)
Q Consensus 35 irg-GiPv~fP~~G~~~~~p~HG----f---aR~~~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~~~ 106 (281)
++| -+-+-.|+||+.+..|..| + +.....++... ..+...++|.....++ ..++.++
T Consensus 48 v~~dsv~~~LpYfg~~y~~p~~~g~ggi~f~~~~~~y~~~~~------kKg~~~i~f~~~~~~~---------~~~~~i~ 112 (138)
T PF14059_consen 48 VSGDSVDSYLPYFGRAYSGPYGGGNGGITFDGPIKDYKMTTD------KKGNWRISFSVRGKED---------SYTFTIT 112 (138)
T ss_dssp EETTEEEEEESSCCC------------EEEEEEEEEEEEEE-------TT--EEEEEEEE-SS----------EEEEEEE
T ss_pred EECCEEEEEecCCCceecCCcccCCCcEEEeccccceEEeec------cCCCEEEEEEECCCce---------EEEEEEE
Confidence 444 5667889999987666543 1 11122222211 1234456666655432 3677788
Q ss_pred EeCCeeEEEEEEEeCCCCceeee
Q 023497 107 ISPGKLTLIPRVRNVDNKAFSFM 129 (281)
Q Consensus 107 L~~~~L~~~l~v~N~g~~~~~f~ 129 (281)
|..++ ...+.|......++.|.
T Consensus 113 i~~ng-~a~l~V~~~~r~~Isy~ 134 (138)
T PF14059_consen 113 IFPNG-SASLSVNSNNRQPISYS 134 (138)
T ss_dssp E-TTS-EEEEEEEETS---EEEE
T ss_pred EecCC-EEEEEEecCCCCEEEEE
Confidence 88887 88888887766666664
No 38
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=52.91 E-value=19 Score=26.04 Aligned_cols=20 Identities=15% Similarity=0.346 Sum_probs=14.0
Q ss_pred eeEEEEEEEeCCCCceeeee
Q 023497 111 KLTLIPRVRNVDNKAFSFMF 130 (281)
Q Consensus 111 ~L~~~l~v~N~g~~~~~f~~ 130 (281)
++.+.++|+|.++++..+.+
T Consensus 1 ~v~~~l~v~N~s~~~v~l~f 20 (82)
T PF12690_consen 1 QVEFTLTVTNNSDEPVTLQF 20 (82)
T ss_dssp -EEEEEEEEE-SSS-EEEEE
T ss_pred CEEEEEEEEeCCCCeEEEEe
Confidence 37889999999999877654
No 39
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=51.76 E-value=19 Score=33.51 Aligned_cols=28 Identities=11% Similarity=0.171 Sum_probs=23.3
Q ss_pred EEEEEEeCCeeEEEEEEEeCCCCceeee
Q 023497 102 RLRISISPGKLTLIPRVRNVDNKAFSFM 129 (281)
Q Consensus 102 ~~~~~L~~~~L~~~l~v~N~g~~~~~f~ 129 (281)
..+|++-+..|+++++|+|.|+++..++
T Consensus 274 ~a~Y~VPGR~l~~~~~VTN~g~~~vrlg 301 (399)
T TIGR03079 274 KANYDVPGRALRVTMEITNNGDQVISIG 301 (399)
T ss_pred ccEEecCCcEEEEEEEEEcCCCCceEEE
Confidence 3578888889999999999999987443
No 40
>cd03171 SORL_Dfx_classI Superoxide reductase-like (SORL) domain, class I; SORL-domains are present in a family of mononuclear non-heme iron proteins that includes superoxide reductase and desulfoferrodoxin. Superoxide reductase-like proteins scavenge superoxide anion radicals as a defense mechanism against reactive oxygen species and are found in anaerobic bacteria and archeae, and microaerophilic Treponema pallidum. Desulfoferrodoxin (class I) is a homodimeric protein, with each protomer comprised of two domains, the N-terminal desulforedoxin (DSRD) domain and C-terminal SORL domain. Each domain has a distinct iron center: the DSRD iron center I, Fe(S-Cys)4; and the SORL iron center II, Fe[His4Cys(Glu)].
Probab=48.77 E-value=29 Score=24.88 Aligned_cols=43 Identities=16% Similarity=0.185 Sum_probs=30.6
Q ss_pred CCCCCCcceEEecccccCCCeEeCCCCEEEEEEEEE---EEecccc
Q 023497 225 MGVDGYKTMLCVDSAAIENPIVLKPFEEWRGRQELS---TVSSSYC 267 (281)
Q Consensus 225 ~~~~~~~~~vCvEp~~~~~~~~L~pge~~~~~~~i~---~~~~~~~ 267 (281)
|..+.|=.+|++..........|.|++.-.+++.+. +...+||
T Consensus 26 M~~eH~I~wI~l~~~~~~~~~~l~P~~~p~a~F~~~~~~~~a~~yC 71 (78)
T cd03171 26 MEEKHYIEWIELLADGKVYRKHLKPGDAPEAEFSVDADVVTARAYC 71 (78)
T ss_pred CCCCeEEEEEEEEeCCcEEEEEeCCCCccEEEEEEeCCCEEEEEEe
Confidence 344556778888876555678999999888777765 3455666
No 41
>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.
Probab=46.11 E-value=6.8 Score=28.06 Aligned_cols=21 Identities=19% Similarity=0.498 Sum_probs=17.5
Q ss_pred eEEecccccCCCeEeCCCCEEEE
Q 023497 233 MLCVDSAAIENPIVLKPFEEWRG 255 (281)
Q Consensus 233 ~vCvEp~~~~~~~~L~pge~~~~ 255 (281)
|-|+++.+. .+.|.|||+|++
T Consensus 57 F~tLp~nT~--lmvL~~gq~W~g 77 (77)
T cd06535 57 FPTLPDNTE--LVLLTPGQSWQG 77 (77)
T ss_pred HhcCCCCcE--EEEEcCCCccCC
Confidence 778888776 799999999974
No 42
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=38.58 E-value=13 Score=25.29 Aligned_cols=14 Identities=50% Similarity=0.802 Sum_probs=11.5
Q ss_pred CCCcCCcceEcccc
Q 023497 33 KAIRGGIPVCFPQF 46 (281)
Q Consensus 33 ~~irgGiPv~fP~~ 46 (281)
=+|+.|||++.|-=
T Consensus 36 YpI~dGIPvlL~~e 49 (60)
T COG2835 36 YPIRDGIPVLLPDE 49 (60)
T ss_pred eecccCccccCchh
Confidence 46999999999843
No 43
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system.
Probab=38.47 E-value=1.3e+02 Score=27.84 Aligned_cols=59 Identities=14% Similarity=0.220 Sum_probs=38.8
Q ss_pred eccCeEEeecCCCCCCCCCccEEEEEecCChhhhccCCcceEEEEEEEEeCC--eeEEEEEEEeCCCCcee
Q 023497 59 RNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISPG--KLTLIPRVRNVDNKAFS 127 (281)
Q Consensus 59 R~~~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~~~L~~~--~L~~~l~v~N~g~~~~~ 127 (281)
.+..|++....- ...++...|+|++...+ ...++.+|++.++ .+.++++|+|.++.+..
T Consensus 143 ~~~~~~~~~~~~--~l~~~~~~v~l~~~~~~--------G~~v~k~ytf~~~sY~i~v~~~v~N~~~~~~~ 203 (366)
T TIGR03593 143 HRTVWQAEGGEY--TLTPGQLPVTLTWDNSN--------GVTVTKTYTFDRDSYLIDVEYKVTNNGDAPVS 203 (366)
T ss_pred CCceEEeCCCce--eeCCCCEEEEEEEECCC--------CeEEEEEEEEeCCeEEEEeEEEEEeCCCCCee
Confidence 456788764310 01122345777665422 3689999999886 58888999999987655
No 44
>PRK01318 membrane protein insertase; Provisional
Probab=37.65 E-value=1.5e+02 Score=29.16 Aligned_cols=61 Identities=18% Similarity=0.300 Sum_probs=37.2
Q ss_pred ccCeEEeecCCCCCCCCCccEEEEEecCChhhhccCCcceEEEEEEEEeCCe--eEEEEEEEeCCCCceee
Q 023497 60 NRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISPGK--LTLIPRVRNVDNKAFSF 128 (281)
Q Consensus 60 ~~~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~~~L~~~~--L~~~l~v~N~g~~~~~f 128 (281)
+..|+...........++...|+|++... -..+++.+|++.+++ ++++++|+|.+..++..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------~g~~~~k~yt~~~~~Y~~~~~~~v~n~~~~~~~~ 170 (521)
T PRK01318 108 RTLYTADGDSLVLADGQNELPVTLTWTNG--------NGLTFTKTYTLDRGDYMFTVEYSVNNNSGAPVNL 170 (521)
T ss_pred CcceeecccceeeccCCCceEEEEEEECC--------CCeEEEEEEEEcCCceEEEEEEEEEcCCCCceee
Confidence 35777662211000112345577776442 236889999997764 88889999987775544
No 45
>PF14100 PmoA: Methane oxygenase PmoA
Probab=37.19 E-value=3e+02 Score=24.46 Aligned_cols=40 Identities=23% Similarity=0.358 Sum_probs=31.5
Q ss_pred ceEEeccccc-CCCeEeCCCCEEEEEEEEEEEecccccCCCCcccc
Q 023497 232 TMLCVDSAAI-ENPIVLKPFEEWRGRQELSTVSSSYCSGQLDPRRV 276 (281)
Q Consensus 232 ~~vCvEp~~~-~~~~~L~pge~~~~~~~i~~~~~~~~~~~~~~~~~ 276 (281)
.++|+-|.-. .+...|+|||+.++++++-+.+ |.+|+.++
T Consensus 224 g~~~~~p~~~~~~~~~l~~G~~l~~rYr~~v~d-----G~~~~~~~ 264 (271)
T PF14100_consen 224 GLFGANPAPAFDGPLTLPPGETLTLRYRVVVHD-----GALDAEEA 264 (271)
T ss_pred CcceecccccccCceecCCCCeEEEEEEEEEeC-----CCCCHHHH
Confidence 4677777654 6899999999999999999877 67776543
No 46
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=36.12 E-value=13 Score=26.83 Aligned_cols=20 Identities=25% Similarity=0.605 Sum_probs=17.0
Q ss_pred eEEecccccCCCeEeCCCCEEE
Q 023497 233 MLCVDSAAIENPIVLKPFEEWR 254 (281)
Q Consensus 233 ~vCvEp~~~~~~~~L~pge~~~ 254 (281)
|-|+++.+. .+.|.|||+|+
T Consensus 60 F~tLp~nT~--l~~L~~gq~W~ 79 (80)
T cd06536 60 FLCLPPNTK--FVLLAENEKWA 79 (80)
T ss_pred HhhCCCCcE--EEEECCCCccC
Confidence 778888776 79999999995
No 47
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=34.41 E-value=92 Score=25.03 Aligned_cols=73 Identities=22% Similarity=0.271 Sum_probs=46.3
Q ss_pred ceEEeccCcceEEcCCCCeEEEEeCCCCcEEEEEecCCCcEEEeCCcccccccCCCCCCCCCcceEEeccccc-------
Q 023497 169 DAITFDGEIDRVYLSTPTKIAIIDHEKKRTFELRKDGMPDSVVWNPWDKKAKALPDMGVDGYKTMLCVDSAAI------- 241 (281)
Q Consensus 169 ~~l~~~~~~D~vy~~~~~~~~l~~~~~~~~i~i~~~~~~~~vvwnP~~~~~~~~~d~~~~~~~~~vCvEp~~~------- 241 (281)
..+.+++-.|-||.- +.+.- .+..|.+ ++.|-|-..+ ...-+|||-++.
T Consensus 47 kv~QLTGfsDPvYaE----A~v~v--~q~DIvL------DvllvNqT~~------------tLqNl~vElat~gdLklve 102 (140)
T PF07718_consen 47 KVVQLTGFSDPVYAE----AYVTV--HQYDIVL------DVLLVNQTNE------------TLQNLTVELATLGDLKLVE 102 (140)
T ss_pred cEEecccCCCCeEEE----EEEEE--EeeeEEE------EEEEEeCChh------------hhhcEEEEEEecCCcEEcc
Confidence 446678888888852 22221 1222322 2345554321 244688888874
Q ss_pred -CCCeEeCCCCEEEEEEEEEEEecc
Q 023497 242 -ENPIVLKPFEEWRGRQELSTVSSS 265 (281)
Q Consensus 242 -~~~~~L~pge~~~~~~~i~~~~~~ 265 (281)
.....|+|++..+.+.+|.+.+..
T Consensus 103 ~p~~~tL~P~~~~~i~~~iKVsSte 127 (140)
T PF07718_consen 103 RPQPITLAPHGFARIKATIKVSSTE 127 (140)
T ss_pred CCCceeeCCCcEEEEEEEEEEEecc
Confidence 468899999999999999987753
No 48
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=33.59 E-value=16 Score=26.24 Aligned_cols=20 Identities=15% Similarity=0.517 Sum_probs=17.3
Q ss_pred eEEecccccCCCeEeCCCCEEE
Q 023497 233 MLCVDSAAIENPIVLKPFEEWR 254 (281)
Q Consensus 233 ~vCvEp~~~~~~~~L~pge~~~ 254 (281)
|-|+++.+. .+.|.|||.|+
T Consensus 58 F~tLp~nT~--l~~l~~gq~W~ 77 (78)
T cd01615 58 FQTLPDNTV--LMLLEPGQKWT 77 (78)
T ss_pred HhcCCCCcE--EEEECCCCCcC
Confidence 788888876 79999999986
No 49
>PF14849 YidC_periplas: YidC periplasmic domain; PDB: 3BS6_B 3BLC_B.
Probab=33.33 E-value=1.8e+02 Score=25.41 Aligned_cols=62 Identities=15% Similarity=0.323 Sum_probs=32.3
Q ss_pred eccCeEEeecCCCCCCCCCccEEEEEecCChhhhccCCcceEEEEEEEEeCC--eeEEEEEEEeCCCCceee
Q 023497 59 RNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISPG--KLTLIPRVRNVDNKAFSF 128 (281)
Q Consensus 59 R~~~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~~~L~~~--~L~~~l~v~N~g~~~~~f 128 (281)
++..|++......+.+..+..+|+|+....+ .+.++.+|+|.++ .+.++++++|.++.+...
T Consensus 68 ~~~~f~~~~~~~~l~~~~~~~~vtf~~~~~~--------g~~i~k~ytf~~~~Y~~~~~i~~~n~~~~~~~~ 131 (270)
T PF14849_consen 68 NDLYFSVSQKSYTLKEGGDSQSVTFTAQLGN--------GLTITKTYTFKPDSYLVDLEISVTNLSDQPVSL 131 (270)
T ss_dssp S--B-B-S-SEEE--TT-SEEEEEEEEE-TT--------S-EEEEEEEEETT--EEEEEEEEE--SSS-EEE
T ss_pred ccceEEEcCCceeeccCCCceEEEEEEECCC--------CEEEEEEEEEcCCcEEEEEEEEEECCCCCcccc
Confidence 5567877753100000124667888876532 2689999999965 467777888988777655
No 50
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=31.16 E-value=18 Score=26.02 Aligned_cols=20 Identities=15% Similarity=0.308 Sum_probs=16.8
Q ss_pred eEEecccccCCCeEeCCCCEEE
Q 023497 233 MLCVDSAAIENPIVLKPFEEWR 254 (281)
Q Consensus 233 ~vCvEp~~~~~~~~L~pge~~~ 254 (281)
|-|+++.+. ++.|.|||+|+
T Consensus 58 F~~LpdnT~--lm~L~~gq~W~ 77 (78)
T cd06539 58 FQTLGDNTH--FMVLEKGQKWT 77 (78)
T ss_pred HhhCCCCCE--EEEECCCCccC
Confidence 778888776 79999999985
No 51
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=30.01 E-value=19 Score=25.99 Aligned_cols=21 Identities=14% Similarity=0.306 Sum_probs=17.4
Q ss_pred eEEecccccCCCeEeCCCCEEEE
Q 023497 233 MLCVDSAAIENPIVLKPFEEWRG 255 (281)
Q Consensus 233 ~vCvEp~~~~~~~~L~pge~~~~ 255 (281)
|-|+++.+. ++.|.|||+|+-
T Consensus 57 F~tLpdnT~--lm~L~~gq~W~p 77 (81)
T cd06537 57 FELLEDDTC--LMVLEQGQSWSP 77 (81)
T ss_pred HhhCCCCCE--EEEECCCCccCC
Confidence 778887776 799999999974
No 52
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=28.90 E-value=20 Score=25.84 Aligned_cols=20 Identities=15% Similarity=0.416 Sum_probs=16.7
Q ss_pred eEEecccccCCCeEeCCCCEEE
Q 023497 233 MLCVDSAAIENPIVLKPFEEWR 254 (281)
Q Consensus 233 ~vCvEp~~~~~~~~L~pge~~~ 254 (281)
|-|+++.+. .+.|.|||+|+
T Consensus 57 F~tLp~nt~--l~vL~~gq~W~ 76 (79)
T cd06538 57 FQALADNTV--FMVLGKGQKWK 76 (79)
T ss_pred HhhCCCCcE--EEEECCCCccC
Confidence 777777776 79999999996
No 53
>PF00942 CBM_3: Cellulose binding domain; InterPro: IPR001956 This domain is involved in cellulose binding [] and is found associated with a wide range of bacterial glycosyl hydrolases. The structure for this domain is known []; it forms a beta sandwich.; GO: 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2L8A_A 4TF4_B 3TF4_B 1JS4_A 1TF4_B 1NBC_A 2YLK_A 3ZQX_A 2XFG_B 2XBT_A ....
Probab=28.37 E-value=1.3e+02 Score=21.46 Aligned_cols=33 Identities=15% Similarity=0.372 Sum_probs=24.4
Q ss_pred CeeEEEEEEEeCCCCceee-eecCcceeecCCCC
Q 023497 110 GKLTLIPRVRNVDNKAFSF-MFALRNYLSVSDIS 142 (281)
Q Consensus 110 ~~L~~~l~v~N~g~~~~~f-~~g~HpYF~v~~~~ 142 (281)
+.+.+.+.|+|++..+.+. .+-++-||..++..
T Consensus 13 n~i~~~~~i~Ntg~~~i~Ls~l~iRYyft~d~~~ 46 (86)
T PF00942_consen 13 NSIEPKFKIKNTGWPAIDLSDLKIRYYFTIDEVS 46 (86)
T ss_dssp SEEEEEEEEEETSSS-EEGGGEEEEEEEE-SSCC
T ss_pred CEEEEEEEEEECCCCCEEcCCEEEEEEEecCCCc
Confidence 6789999999988887765 47788888887543
No 54
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=28.31 E-value=21 Score=25.35 Aligned_cols=19 Identities=16% Similarity=0.307 Sum_probs=15.6
Q ss_pred eEEecccccCCCeEeCCCCEE
Q 023497 233 MLCVDSAAIENPIVLKPFEEW 253 (281)
Q Consensus 233 ~vCvEp~~~~~~~~L~pge~~ 253 (281)
|-|+++.+. .+.|.|||+|
T Consensus 56 F~tLp~nt~--l~~L~~gq~W 74 (74)
T smart00266 56 FQTLPDNTE--LMALEKGEKW 74 (74)
T ss_pred HhcCCCCcE--EEEEcCCCCC
Confidence 777777776 7899999987
No 55
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=26.69 E-value=2.2e+02 Score=23.03 Aligned_cols=21 Identities=10% Similarity=-0.107 Sum_probs=17.2
Q ss_pred CCeEeCCCCEEEEEEEEEEEe
Q 023497 243 NPIVLKPFEEWRGRQELSTVS 263 (281)
Q Consensus 243 ~~~~L~pge~~~~~~~i~~~~ 263 (281)
..-.|+||++.+....|-|..
T Consensus 122 ~I~~L~pg~s~t~~lgIDF~D 142 (145)
T PF14796_consen 122 EIESLEPGASVTVSLGIDFND 142 (145)
T ss_pred cccccCCCCeEEEEEEEeccc
Confidence 566899999999988887754
No 56
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=26.62 E-value=1.7e+02 Score=22.62 Aligned_cols=28 Identities=21% Similarity=0.213 Sum_probs=24.6
Q ss_pred CeeEEEEEEEeCCCCceeeeecCcceee
Q 023497 110 GKLTLIPRVRNVDNKAFSFMFALRNYLS 137 (281)
Q Consensus 110 ~~L~~~l~v~N~g~~~~~f~~g~HpYF~ 137 (281)
..-++++.|+|.++++..|.....+.+.
T Consensus 27 q~~~l~v~i~N~s~~~~tv~v~~~~A~T 54 (121)
T PF06030_consen 27 QKQTLEVRITNNSDKEITVKVSANTATT 54 (121)
T ss_pred CEEEEEEEEEeCCCCCEEEEEEEeeeEe
Confidence 5678888999999999999999888876
No 57
>PLN02303 urease
Probab=26.26 E-value=65 Score=33.50 Aligned_cols=31 Identities=16% Similarity=0.282 Sum_probs=22.8
Q ss_pred EEEEeCCeeEEEEEEEeCCCCceeeeecCccee
Q 023497 104 RISISPGKLTLIPRVRNVDNKAFSFMFALRNYL 136 (281)
Q Consensus 104 ~~~L~~~~L~~~l~v~N~g~~~~~f~~g~HpYF 136 (281)
.++|..++=+++++|+|+||.|+. .|-|-+|
T Consensus 142 ~i~~n~gr~~~~l~v~n~gdrpiq--vgSH~hf 172 (837)
T PLN02303 142 SIIINAGRKAVKLKVTNTGDRPIQ--VGSHYHF 172 (837)
T ss_pred CeeeCCCCCeEEEEEeeCCCCceE--eccccch
Confidence 367777777899999999999555 5555544
No 58
>PRK11827 hypothetical protein; Provisional
Probab=26.11 E-value=26 Score=23.86 Aligned_cols=16 Identities=31% Similarity=0.482 Sum_probs=12.5
Q ss_pred CCCcCCcceEccccCC
Q 023497 33 KAIRGGIPVCFPQFGN 48 (281)
Q Consensus 33 ~~irgGiPv~fP~~G~ 48 (281)
=|||-||||+.+--++
T Consensus 36 YPI~dgIPVlL~deAr 51 (60)
T PRK11827 36 FPLRDGIPVLLETEAR 51 (60)
T ss_pred ccccCCccccCHHHhc
Confidence 4799999999885443
No 59
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.
Probab=23.65 E-value=1.1e+02 Score=25.46 Aligned_cols=39 Identities=18% Similarity=0.357 Sum_probs=23.2
Q ss_pred CCCcEEEeCCcccccccCCCCCCCCCcceEEecccccCCCeEeCCCCEEEEEEEE
Q 023497 205 GMPDSVVWNPWDKKAKALPDMGVDGYKTMLCVDSAAIENPIVLKPFEEWRGRQEL 259 (281)
Q Consensus 205 ~~~~~vvwnP~~~~~~~~~d~~~~~~~~~vCvEp~~~~~~~~L~pge~~~~~~~i 259 (281)
|.+...+||||. ....|+-.-+ ..+.|.+|..++-..+|
T Consensus 134 g~~~y~~WNPW~--------------~~~~~~sa~s--~~~~~~~g~~y~W~~si 172 (175)
T PF05543_consen 134 GQKTYYFWNPWW--------------NDVMIQSAKS--NIIPVSNGYHYNWYRSI 172 (175)
T ss_dssp SEEEEEEE-TT---------------SS-EEEETT----EEEETTTEEEEEEEEE
T ss_pred CCeEEEEeCCcc--------------CCcEEEecCC--CceeecCCCeeEEEEee
Confidence 466799999994 5566654433 36677777776655554
No 60
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=22.87 E-value=31 Score=26.97 Aligned_cols=21 Identities=33% Similarity=0.763 Sum_probs=16.7
Q ss_pred EEEEecccccCCCCcccccccC
Q 023497 259 LSTVSSSYCSGQLDPRRVLHGF 280 (281)
Q Consensus 259 i~~~~~~~~~~~~~~~~~~~~~ 280 (281)
+++... +|||.+||.-+||.|
T Consensus 29 vriIrv-pC~Grv~~~~il~Af 49 (124)
T PF02662_consen 29 VRIIRV-PCSGRVDPEFILRAF 49 (124)
T ss_pred eEEEEc-cCCCccCHHHHHHHH
Confidence 455555 899999999999876
No 61
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=22.50 E-value=1.1e+02 Score=21.35 Aligned_cols=31 Identities=16% Similarity=0.267 Sum_probs=17.2
Q ss_pred CCCcceEEecccccCCCeEeCCCCEEEEEEEEEEEe
Q 023497 228 DGYKTMLCVDSAAIENPIVLKPFEEWRGRQELSTVS 263 (281)
Q Consensus 228 ~~~~~~vCvEp~~~~~~~~L~pge~~~~~~~i~~~~ 263 (281)
.+|. +-..+..+. .|+||++.+..+.+++-.
T Consensus 32 ~GW~--~~~~~~~~~---~l~pG~s~~~~~~V~vp~ 62 (78)
T PF10633_consen 32 EGWT--VSASPASVP---SLPPGESVTVTFTVTVPA 62 (78)
T ss_dssp TTSE-----EEEEE-----B-TTSEEEEEEEEEE-T
T ss_pred CCcc--ccCCccccc---cCCCCCEEEEEEEEECCC
Confidence 3565 333444332 899999999888888743
No 62
>PF13629 T2SS-T3SS_pil_N: Pilus formation protein N terminal region
Probab=21.82 E-value=2.8e+02 Score=19.07 Aligned_cols=45 Identities=20% Similarity=0.340 Sum_probs=31.6
Q ss_pred eEEeccCcceEEcCCCCeEEEEeCCCCcEEEEE--ecCCCcEEEeCCc
Q 023497 170 AITFDGEIDRVYLSTPTKIAIIDHEKKRTFELR--KDGMPDSVVWNPW 215 (281)
Q Consensus 170 ~l~~~~~~D~vy~~~~~~~~l~~~~~~~~i~i~--~~~~~~~vvwnP~ 215 (281)
.+.+.+.+.|++.+-+.-+.+.- .+.+.+.|. +.|...+.||...
T Consensus 14 ~l~~~~~~~rV~v~dp~Iadv~~-~~~~~v~i~gk~~G~T~l~vw~~~ 60 (72)
T PF13629_consen 14 ILRLPGPITRVAVGDPEIADVTV-LSPNEVYITGKKPGTTTLIVWDKD 60 (72)
T ss_pred EEEcCCCcEEEEECCCCEEEEEE-eCCCEEEEEEeCceeEEEEEECCC
Confidence 45667788999988775444433 356777776 3478899999864
No 63
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=21.57 E-value=1.6e+02 Score=22.12 Aligned_cols=24 Identities=13% Similarity=0.306 Sum_probs=17.2
Q ss_pred CeeEEEEEEEeCCCCceeeeecCc
Q 023497 110 GKLTLIPRVRNVDNKAFSFMFALR 133 (281)
Q Consensus 110 ~~L~~~l~v~N~g~~~~~f~~g~H 133 (281)
+.-+.+++++|.++++..|++..=
T Consensus 8 ~~~~~~itl~N~~~~~~ty~~~~~ 31 (112)
T PF06280_consen 8 NKFSFTITLHNYGDKPVTYTLSHV 31 (112)
T ss_dssp SEEEEEEEEEE-SSS-EEEEEEEE
T ss_pred CceEEEEEEEECCCCCEEEEEeeE
Confidence 557888899999999888877544
No 64
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=21.43 E-value=1.3e+02 Score=19.53 Aligned_cols=18 Identities=22% Similarity=0.104 Sum_probs=13.6
Q ss_pred CCeeEEEEEEEeCCCCce
Q 023497 109 PGKLTLIPRVRNVDNKAF 126 (281)
Q Consensus 109 ~~~L~~~l~v~N~g~~~~ 126 (281)
++.++.+++++|.|..+.
T Consensus 11 Gd~v~Yti~v~N~g~~~a 28 (53)
T TIGR01451 11 GDTITYTITVTNNGNVPA 28 (53)
T ss_pred CCEEEEEEEEEECCCCce
Confidence 467888888899887654
No 65
>PF14742 GDE_N_bis: N-terminal domain of (some) glycogen debranching enzymes
Probab=21.35 E-value=4.9e+02 Score=21.72 Aligned_cols=39 Identities=15% Similarity=0.113 Sum_probs=32.4
Q ss_pred cCCcceEEEEEEEEeCCeeEEEEEEEeCCCCceeeeecCc
Q 023497 94 AWPRGFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALR 133 (281)
Q Consensus 94 ~~P~~f~l~~~~~L~~~~L~~~l~v~N~g~~~~~f~~g~H 133 (281)
.-.....++-+-.|.++ |.-+++++|.+.+|..+.+.+.
T Consensus 76 ~~~~~l~l~R~r~v~~~-~~E~l~l~N~~~~pv~~~l~l~ 114 (194)
T PF14742_consen 76 IPDGTLHLRRERFVGGG-LYERLTLTNYSPEPVELTLSLE 114 (194)
T ss_pred cCCCeEEEEEEEEECCC-CEEEEEEEeCCCCCEEEEEEEE
Confidence 44567888888889888 9999999999999888777654
No 66
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=21.32 E-value=1.8e+02 Score=22.04 Aligned_cols=28 Identities=11% Similarity=0.106 Sum_probs=19.0
Q ss_pred EEEeCCeeEEEEEEEeCCCCceeeeecC
Q 023497 105 ISISPGKLTLIPRVRNVDNKAFSFMFAL 132 (281)
Q Consensus 105 ~~L~~~~L~~~l~v~N~g~~~~~f~~g~ 132 (281)
+.+.++.=..+++|+|.+++++.+..-.
T Consensus 9 ii~~~~~~~~~i~v~N~~~~~~~vq~~v 36 (122)
T PF00345_consen 9 IIFNESQRSASITVTNNSDQPYLVQVWV 36 (122)
T ss_dssp EEEETTSSEEEEEEEESSSSEEEEEEEE
T ss_pred EEEeCCCCEEEEEEEcCCCCcEEEEEEE
Confidence 3444544477888999999877766544
No 67
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=20.59 E-value=88 Score=19.53 Aligned_cols=12 Identities=8% Similarity=0.113 Sum_probs=7.0
Q ss_pred EEEEeCCCCcee
Q 023497 116 PRVRNVDNKAFS 127 (281)
Q Consensus 116 l~v~N~g~~~~~ 127 (281)
++++|+|++++-
T Consensus 2 F~~~N~g~~~L~ 13 (45)
T PF07610_consen 2 FEFTNTGDSPLV 13 (45)
T ss_pred EEEEECCCCcEE
Confidence 456666666543
No 68
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=20.19 E-value=1.3e+02 Score=20.63 Aligned_cols=17 Identities=18% Similarity=0.112 Sum_probs=12.8
Q ss_pred CCeeEEEEEEEeCCCCc
Q 023497 109 PGKLTLIPRVRNVDNKA 125 (281)
Q Consensus 109 ~~~L~~~l~v~N~g~~~ 125 (281)
++.++.+++|+|.|..+
T Consensus 40 Gd~v~ytitvtN~G~~~ 56 (76)
T PF01345_consen 40 GDTVTYTITVTNTGPAP 56 (76)
T ss_pred CCEEEEEEEEEECCCCe
Confidence 35688888888888764
No 69
>PF00207 A2M: Alpha-2-macroglobulin family; InterPro: IPR001599 This entry contains serum complement C3 and C4 precursors and alpha-macrogrobulins. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0004866 endopeptidase inhibitor activity; PDB: 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 2PN5_A 3FRP_G 3HRZ_B ....
Probab=20.13 E-value=2.2e+02 Score=20.51 Aligned_cols=35 Identities=20% Similarity=0.179 Sum_probs=20.5
Q ss_pred CcceEEEEEEEEeC-CeeEEEEEEEeCCCCceeeee
Q 023497 96 PRGFELRLRISISP-GKLTLIPRVRNVDNKAFSFMF 130 (281)
Q Consensus 96 P~~f~l~~~~~L~~-~~L~~~l~v~N~g~~~~~f~~ 130 (281)
|+-.++.+=+.|.. +++.+.++|.|..++.+....
T Consensus 55 p~~i~~~lP~~l~~GD~~~i~v~v~N~~~~~~~v~V 90 (92)
T PF00207_consen 55 PFFIQLNLPRSLRRGDQIQIPVTVFNYTDKDQEVTV 90 (92)
T ss_dssp SEEEEEE--SEEETTSEEEEEEEEEE-SSS-EEEEE
T ss_pred eEEEEcCCCcEEecCCEEEEEEEEEeCCCCCEEEEE
Confidence 44555555555554 778888888888777766543
No 70
>PF14310 Fn3-like: Fibronectin type III-like domain; PDB: 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A.
Probab=20.02 E-value=1.3e+02 Score=20.51 Aligned_cols=19 Identities=21% Similarity=0.116 Sum_probs=14.2
Q ss_pred CCeEeCCCCEEEEEEEEEE
Q 023497 243 NPIVLKPFEEWRGRQELST 261 (281)
Q Consensus 243 ~~~~L~pge~~~~~~~i~~ 261 (281)
..+.|+|||+.+.+++|..
T Consensus 25 ~rv~l~pGes~~v~~~l~~ 43 (71)
T PF14310_consen 25 ERVSLAPGESKTVSFTLPP 43 (71)
T ss_dssp EEEEE-TT-EEEEEEEEEH
T ss_pred EEEEECCCCEEEEEEEECH
Confidence 5688999999998888865
Done!