RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 023498
(281 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.1 bits (98), Expect = 2e-04
Identities = 42/287 (14%), Positives = 75/287 (26%), Gaps = 71/287 (24%)
Query: 46 DTLINLVQ-------SRPQGVPLISVSNHMSTLDDP---VMWGFRGFPTMDAELARWVLA 95
D L N Q SR Q P + + + L ++ G G + +A
Sbjct: 117 DRLYNDNQVFAKYNVSRLQ--PYLKLRQALLELRPAKNVLIDGVLGS-------GKTWVA 167
Query: 96 AEDICFKNSILSYF-FRV-----GKCIPITRGGGIYQEHMNEALERLSDGAWLH------ 143
+ +C + F++ C + + M + L D W
Sbjct: 168 LD-VCLSYKVQCKMDFKIFWLNLKNC---NSPETVLE--MLQKLLYQIDPNWTSRSDHSS 221
Query: 144 TFPEGKVSQEDAPIRQLKW--GTASLIV-----------------------R-APVTPIV 177
S + R LK L+V R VT +
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 178 LPIVHRGFEEVMPENFLFGRRPPVPLFNKRISIVVGE-PIEFDIPKMRQMAISMSRDSLL 236
+ + L K + + P E + +S+ +S+
Sbjct: 282 SA-ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE--VLTTNPRRLSIIAESIR 338
Query: 237 PGMG----WPSTTPCGLDEAAQRCLYSSISDKIRTVLESLRIFGKSV 279
G+ W L + L + R + + L +F S
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385
Score = 33.7 bits (76), Expect = 0.084
Identities = 30/244 (12%), Positives = 68/244 (27%), Gaps = 88/244 (36%)
Query: 43 HNADTLINLVQSRPQGVPLISVSNHMSTLDDPVMWGFRGFPTMDAELARWVLAAE---DI 99
H+ D Q + + + + + D + ++ + +L+ E I
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFD------CKDVQ----DMPKSILSKEEIDHI 54
Query: 100 CFKNSILSYFFRVGKCIPITRGGGIYQEHMNEALERLSDGAWLHTFPEGKVSQEDAPIRQ 159
+S R+ + +++ + Q+ + E L + +L + + E
Sbjct: 55 IMSKDAVSGTLRLFWTL-LSKQEEMVQKFVEEVLRI--NYKFLMS----PIKTEQ----- 102
Query: 160 LKWGTASLIVRAPVTPIVLPIVHRGFEEVMPENFLFGRRPPVPLFN-KRISIVVGEPIEF 218
R P + I R + L+ +N R+ +P
Sbjct: 103 ----------RQPSMMTRMYIEQR--------DRLYNDNQVFAKYNVSRL-----QPYL- 138
Query: 219 DIPKMRQMAISMSRDS--LLPGMGWPSTTPCGLDEAAQRCLYSSISDKIRTVLESLRIFG 276
K+RQ + + L+ G+ G G
Sbjct: 139 ---KLRQALLELRPAKNVLIDGVL-------G--------------------------SG 162
Query: 277 KSVL 280
K+ +
Sbjct: 163 KTWV 166
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.005
Identities = 36/227 (15%), Positives = 62/227 (27%), Gaps = 92/227 (40%)
Query: 12 DHMKGVPRKMLIMAV-GAFAKVVANFLNTT------------SVHNADT----------L 48
++ +GVP ML ++ + V +++N T S+ N L
Sbjct: 329 ENNEGVPSPML--SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSL 386
Query: 49 INLV-------------QSRPQGVPL-------------ISVSNHMSTLDDPVMWGFRGF 82
L QSR +P ++ H L
Sbjct: 387 YGLNLTLRKAKAPSGLDQSR---IPFSERKLKFSNRFLPVASPFHSHLLVPAS------- 436
Query: 83 PTMDAELARWVLAAEDICFKNSILSYFFRVGKCIPI--TRGGGIYQEHMNEALERLSDGA 140
++ +L + ++ F + IP+ T G + ER+ D
Sbjct: 437 DLINKDLVK-----NNVSFNAKDIQ--------IPVYDTFDGSDLRVLSGSISERIVDCI 483
Query: 141 ------W--------LH--TFPEGKVSQEDAPIRQLKWGTASLIVRA 171
W H F G S + K GT ++ A
Sbjct: 484 IRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVA 530
Score = 35.0 bits (80), Expect = 0.032
Identities = 39/250 (15%), Positives = 68/250 (27%), Gaps = 104/250 (41%)
Query: 85 MD----AELARWVLAAEDICFKNSILSYFFRVGKCI---PIT--------RGGGIYQEHM 129
MD ++ A+ V D FK++ Y F + + P+ +G I + +
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDT---YGFSILDIVINNPVNLTIHFGGEKGKRIRENYS 1689
Query: 130 NEALERLSDGAWLH--------------TF--PEGKVSQ-----------EDAPIRQLK- 161
E + DG TF +G +S E A LK
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKS 1749
Query: 162 WG----------------TASLIVRAPVTPI--VLPIVH-RG--FEEVMPENFLFGRRPP 200
G A L A V I ++ +V RG + +P +
Sbjct: 1750 KGLIPADATFAGHSLGEYAA-LASLADVMSIESLVEVVFYRGMTMQVAVPRD-------- 1800
Query: 201 VPLFNKRISIVVGEPIEFDIPKMRQMAISMSRDSLLPGMGWPSTTPCGLDEAAQRCLYSS 260
E +AI+ P + A + +
Sbjct: 1801 ----------------ELGRSNYGMIAIN------------PGRVAASFSQEALQYVVER 1832
Query: 261 ISDKIRTVLE 270
+ + ++E
Sbjct: 1833 VGKRTGWLVE 1842
Score = 27.3 bits (60), Expect = 7.6
Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 17/89 (19%)
Query: 208 ISIVVGEPIE----FDIPK---MRQMAISMSRDSLLPGMGWPSTTPCGLDEAAQRCLYSS 260
+ IV+ P+ F K +R+ +M ++++ G ++E + + S
Sbjct: 1662 LDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS 1721
Query: 261 ISDKI-RT-------VLESLRIFGKSVLK 281
+ T L F LK
Sbjct: 1722 EKGLLSATQFTQPALTLMEKAAF--EDLK 1748
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four
helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1
PDB: 1k30_A
Length = 367
Score = 32.1 bits (72), Expect = 0.17
Identities = 30/205 (14%), Positives = 63/205 (30%), Gaps = 31/205 (15%)
Query: 42 VHNADTLINLVQSRPQGVPLISVSNHMSTLDDPVMWGFRGFPTMDAELARWVLAAEDICF 101
V N ++ + QG ++ +SNH + D ++ + +A +
Sbjct: 113 VGNLSLFKDIEEKLQQGHNVVLISNHQTEADPAIISLL--LEKTNPYIAENTIFVAGDRV 170
Query: 102 KNSILSYFFRVGK---CIPITRGGGIYQEH-----------MNEALERLSDGA---WLHT 144
L F +G+ C+ + E + E L G+ W+
Sbjct: 171 LADPLCKPFSIGRNLICVYSKKHMFDIPELTETKRKANTRSLKEMALLLRGGSQLIWI-- 228
Query: 145 FPEGKVSQEDAPIRQL---KWGTAS------LIVRAPVTPIVLPIVHRGFEEVMPENFLF 195
P G + D + + +S LI + V + P+ + + P + +
Sbjct: 229 APSGGRDRPDPSTGEWYPAPFDASSVDNMRRLIQHSDVPGHLFPLALLCHDIMPPPSQVE 288
Query: 196 GRRPPVPLFNK-RISIVVGEPIEFD 219
+ + V I F+
Sbjct: 289 IEIGEKRVIAFNGAGLSVAPEISFE 313
>2php_A Uncharacterized protein MJ0236; chlorine ION, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 2.03A
{Methanocaldococcus jannaschii DSM2661} SCOP: c.74.1.2
Length = 192
Score = 28.4 bits (63), Expect = 2.0
Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 8/76 (10%)
Query: 125 YQEHMNEALERLSDGAWLHTFPEGKVSQEDAPIRQLKWGTASLIVRAPVTPIVLPIVHRG 184
Y + + L+ + +E + ++WGT + P + I RG
Sbjct: 101 YDGGLIKLLKDKFAVSSF------DRKEEPPNVSTMEWGTKIACEKFGGVPDI--IYDRG 152
Query: 185 FEEVMPENFLFGRRPP 200
E P + GR
Sbjct: 153 GEGKEPMIRVLGRDAI 168
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal
resistance, open barrel, plasmid- encoded, metal binding
protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A
2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Length = 74
Score = 26.6 bits (58), Expect = 2.5
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 136 LSDGAWLHTFPEGKVSQED 154
L DG+ +H F +GK+ E+
Sbjct: 12 LQDGSKVHVFKDGKMGMEN 30
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK,
transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB:
2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Length = 307
Score = 26.7 bits (60), Expect = 8.4
Identities = 8/32 (25%), Positives = 11/32 (34%), Gaps = 5/32 (15%)
Query: 187 EVMP----ENFLFGRRPPVPL-FNKRISIVVG 213
MP + L PL ++ R I G
Sbjct: 110 VYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQG 141
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.427
Gapped
Lambda K H
0.267 0.0573 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,417,570
Number of extensions: 266568
Number of successful extensions: 457
Number of sequences better than 10.0: 1
Number of HSP's gapped: 455
Number of HSP's successfully gapped: 17
Length of query: 281
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 189
Effective length of database: 4,133,061
Effective search space: 781148529
Effective search space used: 781148529
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.1 bits)