BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023500
(281 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 274 bits (701), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 137/280 (48%), Positives = 184/280 (65%), Gaps = 12/280 (4%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H RTVR AWSP G LA+ASFDATTCIW+ D+ECV TLEGHENEVKSV+W SG L
Sbjct: 60 HQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNL 119
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
LATC RDKSVW+WEV +E+ECVSVL H QDVK V WHP+ ++L S SYD+T+K++
Sbjct: 120 LATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYRE 179
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
E+ D+W C T+ GH ST+W+L+F+ G +L SCSDD T++IW + + G
Sbjct: 180 EE---DDWVCCATL----EGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV 232
Query: 182 GYA----SWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLIDGPSY 236
+ SW+ +CT+SG+H RTI+ + W + G +A+ DD+++ F E + P++
Sbjct: 233 ACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF 292
Query: 237 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276
+ +AH DVN V W+P E LLAS SDDG + W+
Sbjct: 293 SLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWK 332
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 117/226 (51%), Gaps = 27/226 (11%)
Query: 53 VSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVL-QGHAQDVKMVQWHPTMDVLFSCS 111
++WN +GTLLA+CG D+ + IW G+ + C SVL +GH + V+ V W P + L S S
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTE-GDSWICKSVLSEGHQRTVRKVAWSPCGNYLASAS 80
Query: 112 YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWG 171
+D T +W + D++ CV T+ GH + + ++++ G+ L +CS D ++ +W
Sbjct: 81 FDATTCIW---KKNQDDFECVTTL----EGHENEVKSVAWAPSGNLLATCSRDKSVWVWE 133
Query: 172 ADITRMQSGDGYASWRHLCTISGYHDRTIFSVHW-SREGIIASGAADDSVQFFVESKDDL 230
D D Y ++ H + + V W + ++AS + DD+V+ + E +DD
Sbjct: 134 VD-----EEDEY----ECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW 184
Query: 231 IDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276
+ + H+ V S+ + P +R LAS SDD ++IW
Sbjct: 185 V-------CCATLEGHESTVWSLAFDPSGQR-LASCSDDRTVRIWR 222
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 18/135 (13%)
Query: 144 STIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSV 203
S W L++N G L SC D I+IWG + GD SW +S H RT+ V
Sbjct: 17 SRCWFLAWNPAGTLLASCGGDRRIRIWGTE------GD---SWICKSVLSEGHQRTVRKV 67
Query: 204 HWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRL 262
WS G +AS + D + + +++DD + + H+ +V SV W+P L
Sbjct: 68 AWSPCGNYLASASFDATTCIWKKNQDDF-------ECVTTLEGHENEVKSVAWAPS-GNL 119
Query: 263 LASASDDGMIKIWEL 277
LA+ S D + +WE+
Sbjct: 120 LATCSRDKSVWVWEV 134
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 112/286 (39%), Positives = 160/286 (55%), Gaps = 26/286 (9%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWE-----DVGGDYECVATLEGHENEVKSVSWN 56
H + +RS AW P LLA SFD+T IW D + + +A +EGHENEVK V+W+
Sbjct: 57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWS 116
Query: 57 ASGTLLATCGRDKSVWIWEV-MPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNT 115
G LATC RDKSVWIWE G E+EC+SVLQ H+QDVK V WHP+ +L S SYD+T
Sbjct: 117 NDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDT 176
Query: 116 IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD--KLVSCSDDLTIKIWGAD 173
+++W +D D D+W CV + NGH T+W+ F+ +L S SDD T+++W
Sbjct: 177 VRIW--KDYD-DDWECVAVL----NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWK-- 227
Query: 174 ITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDG 233
D W + H R +++V W G+IAS AD + + E +DG
Sbjct: 228 -YMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEE-----VDG 281
Query: 234 PSYKMLLKKEKAHDM-DVNSVQW-SPGERRLLASASDDGMIKIWEL 277
+K+ K+ H + ++N V+W + +LA+ DDG++ W L
Sbjct: 282 E-WKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSL 326
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 208 EGIIASGAADDSVQFFVESKDD--LIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLAS 265
+GI+A+G+ D ++ DD LID + E AH + SV W P LLA+
Sbjct: 24 QGILATGSTDRKIKLVSVKYDDFTLID-------VLDETAHKKAIRSVAWRP-HTSLLAA 75
Query: 266 ASDDGMIKIW 275
S D + IW
Sbjct: 76 GSFDSTVSIW 85
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 140/276 (50%), Gaps = 42/276 (15%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H+ +V A+SP G+ +A+AS D T +W G + + TL GH + V+ V+++ G
Sbjct: 179 HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG---QLLQTLTGHSSSVRGVAFSPDGQT 235
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
+A+ DK+V +W + + L GH+ V V + P + S S D T+K+W
Sbjct: 236 IASASDDKTVKLWN----RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLW-- 289
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
+ N +QT++ GHSS++W ++F+ G + S SDD T+K+W +
Sbjct: 290 ----NRNGQLLQTLT----GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-------- 333
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 240
+HL T++G H +++ V +S +G IAS + D +V+ + + LL
Sbjct: 334 ----GQHLQTLTG-HSSSVWGVAFSPDGQTIASASDDKTVKLWNRN----------GQLL 378
Query: 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276
+ H V V +SP + + +ASASDD +K+W
Sbjct: 379 QTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWN 413
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 140/276 (50%), Gaps = 42/276 (15%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H+ +VR A+SP G+ +A+AS D T +W G + + TL GH + V V+++ G
Sbjct: 15 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG---QLLQTLTGHSSSVWGVAFSPDGQT 71
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
+A+ DK+V +W + + L GH+ V+ V + P + S S D T+K+W
Sbjct: 72 IASASDDKTVKLWN----RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW-- 125
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
+ N +QT++ GHSS++W ++F+ G + S SDD T+K+W + +Q
Sbjct: 126 ----NRNGQLLQTLT----GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ--- 174
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 240
T++G H +++ V +S +G IAS + D +V+ + + LL
Sbjct: 175 ---------TLTG-HSSSVWGVAFSPDGQTIASASDDKTVKLWNRN----------GQLL 214
Query: 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276
+ H V V +SP + + +ASASDD +K+W
Sbjct: 215 QTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWN 249
Score = 107 bits (267), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 137/276 (49%), Gaps = 42/276 (15%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H+ +V A+SP G+ +A+AS D T +W G + + TL GH + V V+++ G
Sbjct: 302 HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG---QHLQTLTGHSSSVWGVAFSPDGQT 358
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
+A+ DK+V +W + + L GH+ V+ V + P + S S D T+K+W
Sbjct: 359 IASASDDKTVKLWN----RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW-- 412
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
+ N +QT++ GHSS++W ++F+ + S SDD T+K+W + +Q
Sbjct: 413 ----NRNGQLLQTLT----GHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQ--- 461
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 240
T++G H ++ V +S +G IAS + D +V+ + + LL
Sbjct: 462 ---------TLTG-HSSSVRGVAFSPDGQTIASASDDKTVKLWNRN----------GQLL 501
Query: 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276
+ H V V +SP + + +ASASDD +K+W
Sbjct: 502 QTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWN 536
Score = 101 bits (252), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 136/276 (49%), Gaps = 42/276 (15%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H+ +V A+SP G+ +A+AS D T +W G + + TL GH + V+ V+++ G
Sbjct: 343 HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG---QLLQTLTGHSSSVRGVAFSPDGQT 399
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
+A+ DK+V +W + + L GH+ V V + P + S S D T+K+W
Sbjct: 400 IASASDDKTVKLWN----RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLW-- 453
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
+ N +QT++ GHSS++ ++F+ G + S SDD T+K+W + +Q
Sbjct: 454 ----NRNGQLLQTLT----GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ--- 502
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 240
T++G H ++ V +S +G IAS + D +V+ + + LL
Sbjct: 503 ---------TLTG-HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG----------QLL 542
Query: 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276
+ H V V +SP + + +ASAS D +K+W
Sbjct: 543 QTLTGHSSSVWGVAFSP-DGQTIASASSDKTVKLWN 577
Score = 84.3 bits (207), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 115/235 (48%), Gaps = 39/235 (16%)
Query: 43 LEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP 102
LE H + V+ V+++ G +A+ DK+V +W + + L GH+ V V + P
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVWGVAFSP 67
Query: 103 TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS 162
+ S S D T+K+W + N +QT++ GHSS++ ++F+ G + S S
Sbjct: 68 DGQTIASASDDKTVKLW------NRNGQLLQTLT----GHSSSVRGVAFSPDGQTIASAS 117
Query: 163 DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQ 221
DD T+K+W + +Q T++G H +++ V +S +G IAS + D +V+
Sbjct: 118 DDKTVKLWNRNGQLLQ------------TLTG-HSSSVWGVAFSPDGQTIASASDDKTVK 164
Query: 222 FFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276
+ + LL+ H V V +SP + + +ASASDD +K+W
Sbjct: 165 LWNRN----------GQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWN 208
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 97.8 bits (242), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 126/280 (45%), Gaps = 19/280 (6%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H V + P ++ +AS DAT +W+ GD+E TL+GH + V+ +S++ SG L
Sbjct: 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE--RTLKGHTDSVQDISFDHSGKL 164
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
LA+C D ++ +W+ FEC+ + GH +V V P D + S S D TIK+W
Sbjct: 165 LASCSADMTIKLWDF---QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW-- 219
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
+ +CV+T + GH + + N G + SCS+D T+++W + +
Sbjct: 220 ---EVQTGYCVKTFT----GHREWVRMVRPNQDGTLIASCSNDQTVRVWV--VATKECKA 270
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLID--GPSYKML 239
RH+ + + +S G + S+D I S M
Sbjct: 271 ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC 330
Query: 240 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
L HD V V + G + +L S +DD +++W+ N
Sbjct: 331 LMTLVGHDNWVRGVLFHSGGKFIL-SCADDKTLRVWDYKN 369
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 84/286 (29%), Positives = 133/286 (46%), Gaps = 37/286 (12%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HT +V+ ++ SGKLLA+ S D T +W+ G +EC+ T+ GH++ V SVS +G
Sbjct: 149 HTDSVQDISFDHSGKLLASCSADMTIKLWDFQG--FECIRTMHGHDHNVSSVSIMPNGDH 206
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
+ + RDK++ +WEV G CV GH + V+MV+ + ++ SCS D T++VW
Sbjct: 207 IVSASRDKTIKMWEVQTGY---CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 263
Query: 122 EDTD-----SDNWHCVQTIS-ESNNGHSSTIWALSFNAK-----GDKLVSCSDDLTIKIW 170
+ ++ H V+ IS + +SS A K G L+S S D TIK+W
Sbjct: 264 ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW 323
Query: 171 GADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDL 230
++ L T+ G HD + V + G ADD + K+
Sbjct: 324 DV-----------STGMCLMTLVG-HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN-- 369
Query: 231 IDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276
K +K AH+ V S+ + + + S D +K+WE
Sbjct: 370 ------KRCMKTLNAHEHFVTSLDFHKTA-PYVVTGSVDQTVKVWE 408
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 59/131 (45%), Gaps = 18/131 (13%)
Query: 40 VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ 99
V LE NE K + + G L RD WI P ++ L GH V V
Sbjct: 65 VMELESKLNEAKE-EFTSGGPLGQK--RDPKEWI--PRPPEKY----ALSGHRSPVTRVI 115
Query: 100 WHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV 159
+HP V+ S S D TIKVW E D + GH+ ++ +SF+ G L
Sbjct: 116 FHPVFSVMVSASEDATIKVWDYETGD---------FERTLKGHTDSVQDISFDHSGKLLA 166
Query: 160 SCSDDLTIKIW 170
SCS D+TIK+W
Sbjct: 167 SCSADMTIKLW 177
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 131/279 (46%), Gaps = 37/279 (13%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HT+ V S +SP+G+ LA++S D IW G +E T+ GH+ + V+W++ L
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWSSDSNL 82
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
L + DK++ IW+V G +C+ L+GH+ V ++P +++ S S+D ++++W
Sbjct: 83 LVSASDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-- 137
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
D C++T+ HS + A+ FN G +VS S D +IW
Sbjct: 138 ---DVKTGMCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--------- 181
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 240
AS + L T+ + + V +S G I + D++++ + SK L
Sbjct: 182 --ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK---------CL 230
Query: 241 KKEKAHDMDVNSV--QWSPGERRLLASASDDGMIKIWEL 277
K H + + +S + + S S+D M+ IW L
Sbjct: 231 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNL 269
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 134/280 (47%), Gaps = 39/280 (13%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H + AWS LL +AS D T IW+ G +C+ TL+GH N V ++N L
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNL 124
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
+ + D+SV IW+V G C+ L H+ V V ++ ++ S SYD ++W
Sbjct: 125 IVSGSFDESVRIWDVKTG---MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW-- 179
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
D+ + C++T+ + +N S + F+ G +++ + D T+K+W
Sbjct: 180 ---DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW----------- 222
Query: 182 GYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFF-VESKDDLIDGPSYK 237
Y+ + L T +G+ +++ ++S G I SG+ D+ V + +++K+
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKE--------- 273
Query: 238 MLLKKEKAHDMDVNSVQWSPGERRLLASA-SDDGMIKIWE 276
+++K + H V S P E + ++A +D IK+W+
Sbjct: 274 -IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 312
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 124/247 (50%), Gaps = 34/247 (13%)
Query: 33 VGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHA 92
V +Y + TL GH V SV ++ +G LA+ DK + IW G +FE + GH
Sbjct: 12 VKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFE--KTISGHK 68
Query: 93 QDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN 152
+ V W ++L S S D T+K+W D + C++T+ GHS+ ++ +FN
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIW-----DVSSGKCLKTL----KGHSNYVFCCNFN 119
Query: 153 AKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-II 211
+ + +VS S D +++IW +++G L T+ + D + +VH++R+G +I
Sbjct: 120 PQSNLIVSGSFDESVRIW-----DVKTG------MCLKTLPAHSD-PVSAVHFNRDGSLI 167
Query: 212 ASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGM 271
S + D + + D G K L+ + + V+ V++SP + +LA A+ D
Sbjct: 168 VSSSYDGLCRIW-----DTASGQCLKTLIDDD---NPPVSFVKFSPNGKYILA-ATLDNT 218
Query: 272 IKIWELA 278
+K+W+ +
Sbjct: 219 LKLWDYS 225
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 101/200 (50%), Gaps = 32/200 (16%)
Query: 81 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNN 140
+ + L GH + V V++ P + L S S D IK+W A D + +TIS
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTIS---- 65
Query: 141 GHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTI 200
GH I +++++ + LVS SDD T+KIW +S + L T+ G H +
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYV 113
Query: 201 FSVHWSRE-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGE 259
F +++ + +I SG+ D+SV+ + D+ G M LK AH V++V ++ +
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIW-----DVKTG----MCLKTLPAHSDPVSAVHFN-RD 163
Query: 260 RRLLASASDDGMIKIWELAN 279
L+ S+S DG+ +IW+ A+
Sbjct: 164 GSLIVSSSYDGLCRIWDTAS 183
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 130/277 (46%), Gaps = 33/277 (11%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HT+ V S +SP+G+ LA++S D IW G +E T+ GH+ + V+W++ L
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWSSDSNL 82
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
L + DK++ IW+V G +C+ L+GH+ V ++P +++ S S+D ++++W
Sbjct: 83 LVSASDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-- 137
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
D C++T+ HS + A+ FN G +VS S D +IW
Sbjct: 138 ---DVKTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--------- 181
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 240
AS + L T+ + + V +S G I + D++++ + SK + +
Sbjct: 182 --ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 239
Query: 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
K + V +W + S S+D ++ IW L
Sbjct: 240 KYCIFANFSVTGGKW-------IVSGSEDNLVYIWNL 269
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 131/279 (46%), Gaps = 37/279 (13%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H + AWS LL +AS D T IW+ G +C+ TL+GH N V ++N L
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNL 124
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
+ + D+SV IW+V G +C+ L H+ V V ++ ++ S SYD ++W
Sbjct: 125 IVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW-- 179
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
D+ + C++T+ + +N S + F+ G +++ + D T+K+W
Sbjct: 180 ---DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW----------- 222
Query: 182 GYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFFVESKDDLIDGPSYKM 238
Y+ + L T +G+ +++ ++S G I SG+ D+ V + K
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---------NLQTKE 273
Query: 239 LLKKEKAHDMDVNSVQWSPGERRLLASA-SDDGMIKIWE 276
+++K + H V S P E + ++A +D IK+++
Sbjct: 274 IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLFK 312
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 125/249 (50%), Gaps = 34/249 (13%)
Query: 31 EDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQG 90
E V +Y TL GH V SV ++ +G LA+ DK + IW G +FE + G
Sbjct: 10 EFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFE--KTISG 66
Query: 91 HAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALS 150
H + V W ++L S S D T+K+W D + C++T+ GHS+ ++ +
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIW-----DVSSGKCLKTL----KGHSNYVFCCN 117
Query: 151 FNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG- 209
FN + + +VS S D +++IW +++G + L T+ + D + +VH++R+G
Sbjct: 118 FNPQSNLIVSGSFDESVRIW-----DVKTG------KCLKTLPAHSD-PVSAVHFNRDGS 165
Query: 210 IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDD 269
+I S + D + + D G K L+ + + V+ V++SP + +LA A+ D
Sbjct: 166 LIVSSSYDGLCRIW-----DTASGQCLKTLIDDD---NPPVSFVKFSPNGKYILA-ATLD 216
Query: 270 GMIKIWELA 278
+K+W+ +
Sbjct: 217 NTLKLWDYS 225
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 32/193 (16%)
Query: 88 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 147
L GH + V V++ P + L S S D IK+W A D + +TIS GH I
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTIS----GHKLGIS 72
Query: 148 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR 207
+++++ + LVS SDD T+KIW +S + L T+ G H +F +++
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYVFCCNFNP 120
Query: 208 E-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 266
+ +I SG+ D+SV+ + D+ G K L AH V++V ++ + L+ S+
Sbjct: 121 QSNLIVSGSFDESVRIW-----DVKTGKCLKTL----PAHSDPVSAVHFNR-DGSLIVSS 170
Query: 267 SDDGMIKIWELAN 279
S DG+ +IW+ A+
Sbjct: 171 SYDGLCRIWDTAS 183
Score = 33.9 bits (76), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
Query: 191 TISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMD 249
T++G H + + SV +S G +AS +AD ++ + DG K + H +
Sbjct: 21 TLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIW-----GAYDGKFEKTI----SGHKLG 70
Query: 250 VNSVQWSPGERRLLASASDDGMIKIWELAN 279
++ V WS + LL SASDD +KIW++++
Sbjct: 71 ISDVAWS-SDSNLLVSASDDKTLKIWDVSS 99
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 130/277 (46%), Gaps = 33/277 (11%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HT+ V S +SP+G+ LA++S D IW G +E T+ GH+ + V+W++ L
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWSSDSNL 82
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
L + DK++ IW+V G +C+ L+GH+ V ++P +++ S S+D ++++W
Sbjct: 83 LVSASDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-- 137
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
D C++T+ HS + A+ FN G +VS S D +IW
Sbjct: 138 ---DVKTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--------- 181
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 240
AS + L T+ + + V +S G I + D++++ + SK + +
Sbjct: 182 --ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 239
Query: 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
K + V +W + S S+D ++ IW L
Sbjct: 240 KYCIFANFSVTGGKW-------IVSGSEDNLVYIWNL 269
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 137/281 (48%), Gaps = 41/281 (14%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H + AWS LL +AS D T IW+ G +C+ TL+GH N V ++N L
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNL 124
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
+ + D+SV IW+V G +C+ L H+ V V ++ ++ S SYD ++W
Sbjct: 125 IVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW-- 179
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
D+ + C++T+ + +N S + F+ G +++ + D T+K+W
Sbjct: 180 ---DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW----------- 222
Query: 182 GYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFF-VESKDDLIDGPSYK 237
Y+ + L T +G+ +++ ++S G I SG+ D+ V + +++K+
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE--------- 273
Query: 238 MLLKKEKAHDMDVNSVQWSPGERRLLASAS--DDGMIKIWE 276
+++K + H V S P E ++ASA+ +D IK+++
Sbjct: 274 -IVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLYK 312
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 125/249 (50%), Gaps = 34/249 (13%)
Query: 31 EDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQG 90
E V +Y TL GH V SV ++ +G LA+ DK + IW G +FE + G
Sbjct: 10 EFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFE--KTISG 66
Query: 91 HAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALS 150
H + V W ++L S S D T+K+W D + C++T+ GHS+ ++ +
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIW-----DVSSGKCLKTL----KGHSNYVFCCN 117
Query: 151 FNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG- 209
FN + + +VS S D +++IW +++G + L T+ + D + +VH++R+G
Sbjct: 118 FNPQSNLIVSGSFDESVRIW-----DVKTG------KCLKTLPAHSD-PVSAVHFNRDGS 165
Query: 210 IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDD 269
+I S + D + + D G K L+ + + V+ V++SP + +LA A+ D
Sbjct: 166 LIVSSSYDGLCRIW-----DTASGQCLKTLIDDD---NPPVSFVKFSPNGKYILA-ATLD 216
Query: 270 GMIKIWELA 278
+K+W+ +
Sbjct: 217 NTLKLWDYS 225
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 32/193 (16%)
Query: 88 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 147
L GH + V V++ P + L S S D IK+W A D + +TIS GH I
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTIS----GHKLGIS 72
Query: 148 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR 207
+++++ + LVS SDD T+KIW +S + L T+ G H +F +++
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYVFCCNFNP 120
Query: 208 E-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 266
+ +I SG+ D+SV+ + D+ G K L AH V++V ++ + L+ S+
Sbjct: 121 QSNLIVSGSFDESVRIW-----DVKTGKCLKTL----PAHSDPVSAVHFNR-DGSLIVSS 170
Query: 267 SDDGMIKIWELAN 279
S DG+ +IW+ A+
Sbjct: 171 SYDGLCRIWDTAS 183
Score = 33.9 bits (76), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
Query: 191 TISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMD 249
T++G H + + SV +S G +AS +AD ++ + DG K + H +
Sbjct: 21 TLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIW-----GAYDGKFEKTI----SGHKLG 70
Query: 250 VNSVQWSPGERRLLASASDDGMIKIWELAN 279
++ V WS + LL SASDD +KIW++++
Sbjct: 71 ISDVAWS-SDSNLLVSASDDKTLKIWDVSS 99
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 130/277 (46%), Gaps = 33/277 (11%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HT+ V S +SP+G+ LA++S D IW G +E T+ GH+ + V+W++ L
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWSSDSNL 85
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
L + DK++ IW+V G +C+ L+GH+ V ++P +++ S S+D ++++W
Sbjct: 86 LVSASDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-- 140
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
D C++T+ HS + A+ FN G +VS S D +IW
Sbjct: 141 ---DVKTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--------- 184
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 240
AS + L T+ + + V +S G I + D++++ + SK + +
Sbjct: 185 --ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 242
Query: 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
K + V +W + S S+D ++ IW L
Sbjct: 243 KYCIFANFSVTGGKW-------IVSGSEDNLVYIWNL 272
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 135/280 (48%), Gaps = 39/280 (13%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H + AWS LL +AS D T IW+ G +C+ TL+GH N V ++N L
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNL 127
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
+ + D+SV IW+V G +C+ L H+ V V ++ ++ S SYD ++W
Sbjct: 128 IVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW-- 182
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
D+ + C++T+ + +N S + F+ G +++ + D T+K+W
Sbjct: 183 ---DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW----------- 225
Query: 182 GYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFF-VESKDDLIDGPSYK 237
Y+ + L T +G+ +++ ++S G I SG+ D+ V + +++K+
Sbjct: 226 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE--------- 276
Query: 238 MLLKKEKAHDMDVNSVQWSPGERRLLASA-SDDGMIKIWE 276
+++K + H V S P E + ++A +D IK+W+
Sbjct: 277 -IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 315
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 124/247 (50%), Gaps = 34/247 (13%)
Query: 33 VGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHA 92
V +Y TL GH V SV ++ +G LA+ DK + IW G +FE + GH
Sbjct: 15 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFE--KTISGHK 71
Query: 93 QDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN 152
+ V W ++L S S D T+K+W D + C++T+ GHS+ ++ +FN
Sbjct: 72 LGISDVAWSSDSNLLVSASDDKTLKIW-----DVSSGKCLKTL----KGHSNYVFCCNFN 122
Query: 153 AKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-II 211
+ + +VS S D +++IW +++G + L T+ + D + +VH++R+G +I
Sbjct: 123 PQSNLIVSGSFDESVRIW-----DVKTG------KCLKTLPAHSD-PVSAVHFNRDGSLI 170
Query: 212 ASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGM 271
S + D + + D G K L+ + + V+ V++SP + +LA A+ D
Sbjct: 171 VSSSYDGLCRIW-----DTASGQCLKTLIDDD---NPPVSFVKFSPNGKYILA-ATLDNT 221
Query: 272 IKIWELA 278
+K+W+ +
Sbjct: 222 LKLWDYS 228
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 32/193 (16%)
Query: 88 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 147
L GH + V V++ P + L S S D IK+W A D + +TIS GH I
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTIS----GHKLGIS 75
Query: 148 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR 207
+++++ + LVS SDD T+KIW +S + L T+ G H +F +++
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYVFCCNFNP 123
Query: 208 E-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 266
+ +I SG+ D+SV+ + D+ G K L AH V++V ++ + L+ S+
Sbjct: 124 QSNLIVSGSFDESVRIW-----DVKTGKCLKTL----PAHSDPVSAVHFN-RDGSLIVSS 173
Query: 267 SDDGMIKIWELAN 279
S DG+ +IW+ A+
Sbjct: 174 SYDGLCRIWDTAS 186
Score = 34.3 bits (77), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
Query: 191 TISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMD 249
T++G H + + SV +S G +AS +AD ++ + DG K + H +
Sbjct: 24 TLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIW-----GAYDGKFEKTI----SGHKLG 73
Query: 250 VNSVQWSPGERRLLASASDDGMIKIWELAN 279
++ V WS + LL SASDD +KIW++++
Sbjct: 74 ISDVAWS-SDSNLLVSASDDKTLKIWDVSS 102
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 130/277 (46%), Gaps = 33/277 (11%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HT+ V S +SP+G+ LA++S D IW G +E T+ GH+ + V+W++ L
Sbjct: 23 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWSSDSNL 80
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
L + DK++ IW+V G +C+ L+GH+ V ++P +++ S S+D ++++W
Sbjct: 81 LVSASDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-- 135
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
D C++T+ HS + A+ FN G +VS S D +IW
Sbjct: 136 ---DVKTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--------- 179
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 240
AS + L T+ + + V +S G I + D++++ + SK + +
Sbjct: 180 --ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 237
Query: 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
K + V +W + S S+D ++ IW L
Sbjct: 238 KYCIFANFSVTGGKW-------IVSGSEDNLVYIWNL 267
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 131/279 (46%), Gaps = 37/279 (13%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H + AWS LL +AS D T IW+ G +C+ TL+GH N V ++N L
Sbjct: 65 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNL 122
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
+ + D+SV IW+V G +C+ L H+ V V ++ ++ S SYD ++W
Sbjct: 123 IVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW-- 177
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
D+ + C++T+ + +N S + F+ G +++ + D T+K+W
Sbjct: 178 ---DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW----------- 220
Query: 182 GYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFFVESKDDLIDGPSYKM 238
Y+ + L T +G+ +++ ++S G I SG+ D+ V + K
Sbjct: 221 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---------NLQTKE 271
Query: 239 LLKKEKAHDMDVNSVQWSPGERRLLASA-SDDGMIKIWE 276
+++K + H V S P E + ++A +D IK+W+
Sbjct: 272 IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 310
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 124/247 (50%), Gaps = 34/247 (13%)
Query: 33 VGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHA 92
V +Y TL GH V SV ++ +G LA+ DK + IW G +FE + GH
Sbjct: 10 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFE--KTISGHK 66
Query: 93 QDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN 152
+ V W ++L S S D T+K+W D + C++T+ GHS+ ++ +FN
Sbjct: 67 LGISDVAWSSDSNLLVSASDDKTLKIW-----DVSSGKCLKTL----KGHSNYVFCCNFN 117
Query: 153 AKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-II 211
+ + +VS S D +++IW +++G + L T+ + D + +VH++R+G +I
Sbjct: 118 PQSNLIVSGSFDESVRIW-----DVKTG------KCLKTLPAHSD-PVSAVHFNRDGSLI 165
Query: 212 ASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGM 271
S + D + + D G K L+ + + V+ V++SP + +LA A+ D
Sbjct: 166 VSSSYDGLCRIW-----DTASGQCLKTLIDDD---NPPVSFVKFSPNGKYILA-ATLDNT 216
Query: 272 IKIWELA 278
+K+W+ +
Sbjct: 217 LKLWDYS 223
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 32/193 (16%)
Query: 88 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 147
L GH + V V++ P + L S S D IK+W A D + +TIS GH I
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTIS----GHKLGIS 70
Query: 148 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR 207
+++++ + LVS SDD T+KIW +S + L T+ G H +F +++
Sbjct: 71 DVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYVFCCNFNP 118
Query: 208 E-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 266
+ +I SG+ D+SV+ + D+ G K L AH V++V ++ + L+ S+
Sbjct: 119 QSNLIVSGSFDESVRIW-----DVKTGKCLKTL----PAHSDPVSAVHFN-RDGSLIVSS 168
Query: 267 SDDGMIKIWELAN 279
S DG+ +IW+ A+
Sbjct: 169 SYDGLCRIWDTAS 181
Score = 34.3 bits (77), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
Query: 191 TISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMD 249
T++G H + + SV +S G +AS +AD ++ + DG K + H +
Sbjct: 19 TLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIW-----GAYDGKFEKTI----SGHKLG 68
Query: 250 VNSVQWSPGERRLLASASDDGMIKIWELAN 279
++ V WS + LL SASDD +KIW++++
Sbjct: 69 ISDVAWS-SDSNLLVSASDDKTLKIWDVSS 97
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 130/277 (46%), Gaps = 33/277 (11%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HT+ V S +SP+G+ LA++S D IW G +E T+ GH+ + V+W++ L
Sbjct: 39 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWSSDSNL 96
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
L + DK++ IW+V G +C+ L+GH+ V ++P +++ S S+D ++++W
Sbjct: 97 LVSASDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-- 151
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
D C++T+ HS + A+ FN G +VS S D +IW
Sbjct: 152 ---DVKTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--------- 195
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 240
AS + L T+ + + V +S G I + D++++ + SK + +
Sbjct: 196 --ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 253
Query: 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
K + V +W + S S+D ++ IW L
Sbjct: 254 KYCIFANFSVTGGKW-------IVSGSEDNLVYIWNL 283
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 137/281 (48%), Gaps = 41/281 (14%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H + AWS LL +AS D T IW+ G +C+ TL+GH N V ++N L
Sbjct: 81 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNL 138
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
+ + D+SV IW+V G +C+ L H+ V V ++ ++ S SYD ++W
Sbjct: 139 IVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW-- 193
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
D+ + C++T+ + +N S + F+ G +++ + D T+K+W
Sbjct: 194 ---DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW----------- 236
Query: 182 GYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFF-VESKDDLIDGPSYK 237
Y+ + L T +G+ +++ ++S G I SG+ D+ V + +++K+
Sbjct: 237 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE--------- 287
Query: 238 MLLKKEKAHDMDVNSVQWSPGERRLLASAS--DDGMIKIWE 276
+++K + H V S P E ++ASA+ +D IK+W+
Sbjct: 288 -IVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWK 326
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 126/257 (49%), Gaps = 34/257 (13%)
Query: 23 FDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF 82
F T V +Y TL GH V SV ++ +G LA+ DK + IW G +F
Sbjct: 16 FQGTQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KF 74
Query: 83 ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGH 142
E + GH + V W ++L S S D T+K+W D + C++T+ GH
Sbjct: 75 E--KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW-----DVSSGKCLKTL----KGH 123
Query: 143 SSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFS 202
S+ ++ +FN + + +VS S D +++IW +++G + L T+ + D + +
Sbjct: 124 SNYVFCCNFNPQSNLIVSGSFDESVRIW-----DVKTG------KCLKTLPAHSD-PVSA 171
Query: 203 VHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERR 261
VH++R+G +I S + D + + D G K L+ + + V+ V++SP +
Sbjct: 172 VHFNRDGSLIVSSSYDGLCRIW-----DTASGQCLKTLIDDD---NPPVSFVKFSPNGKY 223
Query: 262 LLASASDDGMIKIWELA 278
+LA A+ D +K+W+ +
Sbjct: 224 ILA-ATLDNTLKLWDYS 239
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 32/193 (16%)
Query: 88 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 147
L GH + V V++ P + L S S D IK+W A D + +TIS GH I
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTIS----GHKLGIS 86
Query: 148 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR 207
+++++ + LVS SDD T+KIW +S + L T+ G H +F +++
Sbjct: 87 DVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYVFCCNFNP 134
Query: 208 E-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 266
+ +I SG+ D+SV+ + D+ G K L AH V++V ++ + L+ S+
Sbjct: 135 QSNLIVSGSFDESVRIW-----DVKTGKCLKTL----PAHSDPVSAVHFN-RDGSLIVSS 184
Query: 267 SDDGMIKIWELAN 279
S DG+ +IW+ A+
Sbjct: 185 SYDGLCRIWDTAS 197
Score = 34.3 bits (77), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
Query: 191 TISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMD 249
T++G H + + SV +S G +AS +AD ++ + DG K + H +
Sbjct: 35 TLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIW-----GAYDGKFEKTI----SGHKLG 84
Query: 250 VNSVQWSPGERRLLASASDDGMIKIWELAN 279
++ V WS + LL SASDD +KIW++++
Sbjct: 85 ISDVAWS-SDSNLLVSASDDKTLKIWDVSS 113
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 130/277 (46%), Gaps = 33/277 (11%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HT+ V S +SP+G+ LA++S D IW G +E T+ GH+ + V+W++ L
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWSSDSNL 79
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
L + DK++ IW+V G +C+ L+GH+ V ++P +++ S S+D ++++W
Sbjct: 80 LVSASDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-- 134
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
D C++T+ HS + A+ FN G +VS S D +IW
Sbjct: 135 ---DVKTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--------- 178
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 240
AS + L T+ + + V +S G I + D++++ + SK + +
Sbjct: 179 --ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 236
Query: 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
K + V +W + S S+D ++ IW L
Sbjct: 237 KYCIFANFSVTGGKW-------IVSGSEDNLVYIWNL 266
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 131/279 (46%), Gaps = 37/279 (13%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H + AWS LL +AS D T IW+ G +C+ TL+GH N V ++N L
Sbjct: 64 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNL 121
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
+ + D+SV IW+V G +C+ L H+ V V ++ ++ S SYD ++W
Sbjct: 122 IVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW-- 176
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
D+ + C++T+ + +N S + F+ G +++ + D T+K+W
Sbjct: 177 ---DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW----------- 219
Query: 182 GYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFFVESKDDLIDGPSYKM 238
Y+ + L T +G+ +++ ++S G I SG+ D+ V + K
Sbjct: 220 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---------NLQTKE 270
Query: 239 LLKKEKAHDMDVNSVQWSPGERRLLASA-SDDGMIKIWE 276
+++K + H V S P E + ++A +D IK+W+
Sbjct: 271 IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 309
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 124/247 (50%), Gaps = 34/247 (13%)
Query: 33 VGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHA 92
V +Y TL GH V SV ++ +G LA+ DK + IW G +FE + GH
Sbjct: 9 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFE--KTISGHK 65
Query: 93 QDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN 152
+ V W ++L S S D T+K+W D + C++T+ GHS+ ++ +FN
Sbjct: 66 LGISDVAWSSDSNLLVSASDDKTLKIW-----DVSSGKCLKTL----KGHSNYVFCCNFN 116
Query: 153 AKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-II 211
+ + +VS S D +++IW +++G + L T+ + D + +VH++R+G +I
Sbjct: 117 PQSNLIVSGSFDESVRIW-----DVKTG------KCLKTLPAHSD-PVSAVHFNRDGSLI 164
Query: 212 ASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGM 271
S + D + + D G K L+ + + V+ V++SP + +LA A+ D
Sbjct: 165 VSSSYDGLCRIW-----DTASGQCLKTLIDDD---NPPVSFVKFSPNGKYILA-ATLDNT 215
Query: 272 IKIWELA 278
+K+W+ +
Sbjct: 216 LKLWDYS 222
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 32/193 (16%)
Query: 88 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 147
L GH + V V++ P + L S S D IK+W A D + +TIS GH I
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTIS----GHKLGIS 69
Query: 148 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR 207
+++++ + LVS SDD T+KIW +S + L T+ G H +F +++
Sbjct: 70 DVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYVFCCNFNP 117
Query: 208 E-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 266
+ +I SG+ D+SV+ + D+ G K L AH V++V ++ + L+ S+
Sbjct: 118 QSNLIVSGSFDESVRIW-----DVKTGKCLKTL----PAHSDPVSAVHFN-RDGSLIVSS 167
Query: 267 SDDGMIKIWELAN 279
S DG+ +IW+ A+
Sbjct: 168 SYDGLCRIWDTAS 180
Score = 34.3 bits (77), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
Query: 191 TISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMD 249
T++G H + + SV +S G +AS +AD ++ + DG K + H +
Sbjct: 18 TLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIW-----GAYDGKFEKTI----SGHKLG 67
Query: 250 VNSVQWSPGERRLLASASDDGMIKIWELAN 279
++ V WS + LL SASDD +KIW++++
Sbjct: 68 ISDVAWS-SDSNLLVSASDDKTLKIWDVSS 96
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 130/279 (46%), Gaps = 37/279 (13%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HT+ V S +SP+G+ LA++S D IW G +E T+ GH+ + V+W++ L
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWSSDSNL 82
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
L + DK++ IW+V G +C+ L+GH+ V ++P +++ S S+D ++++W
Sbjct: 83 LVSASDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-- 137
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
D C++T+ HS + A+ FN G +VS S D +IW
Sbjct: 138 ---DVKTGMCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--------- 181
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 240
AS + L T+ + + V +S G I + D+ ++ + SK L
Sbjct: 182 --ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGK---------CL 230
Query: 241 KKEKAHDMDVNSV--QWSPGERRLLASASDDGMIKIWEL 277
K H + + +S + + S S+D M+ IW L
Sbjct: 231 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNL 269
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 129/279 (46%), Gaps = 37/279 (13%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H + AWS LL +AS D T IW+ G +C+ TL+GH N V ++N L
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNL 124
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
+ + D+SV IW+V G C+ L H+ V V ++ ++ S SYD ++W
Sbjct: 125 IVSGSFDESVRIWDVKTG---MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW-- 179
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
D+ + C++T+ + +N S + F+ G +++ + D +K+W
Sbjct: 180 ---DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNDLKLW----------- 222
Query: 182 GYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFFVESKDDLIDGPSYKM 238
Y+ + L T +G+ +++ ++S G I SG+ D+ V + K
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIW---------NLQTKE 273
Query: 239 LLKKEKAHDMDVNSVQWSPGERRLLASA-SDDGMIKIWE 276
+++K + H V S P E + ++A +D IK+W+
Sbjct: 274 IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 312
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 124/247 (50%), Gaps = 34/247 (13%)
Query: 33 VGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHA 92
V +Y + TL GH V SV ++ +G LA+ DK + IW G +FE + GH
Sbjct: 12 VKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFE--KTISGHK 68
Query: 93 QDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN 152
+ V W ++L S S D T+K+W D + C++T+ GHS+ ++ +FN
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIW-----DVSSGKCLKTL----KGHSNYVFCCNFN 119
Query: 153 AKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-II 211
+ + +VS S D +++IW +++G L T+ + D + +VH++R+G +I
Sbjct: 120 PQSNLIVSGSFDESVRIW-----DVKTG------MCLKTLPAHSD-PVSAVHFNRDGSLI 167
Query: 212 ASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGM 271
S + D + + D G K L+ + + V+ V++SP + +LA+ D+ +
Sbjct: 168 VSSSYDGLCRIW-----DTASGQCLKTLIDDD---NPPVSFVKFSPNGKYILAATLDNDL 219
Query: 272 IKIWELA 278
K+W+ +
Sbjct: 220 -KLWDYS 225
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 101/200 (50%), Gaps = 32/200 (16%)
Query: 81 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNN 140
+ + L GH + V V++ P + L S S D IK+W A D + +TIS
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTIS---- 65
Query: 141 GHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTI 200
GH I +++++ + LVS SDD T+KIW +S + L T+ G H +
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYV 113
Query: 201 FSVHWSRE-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGE 259
F +++ + +I SG+ D+SV+ + D+ G M LK AH V++V ++ +
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIW-----DVKTG----MCLKTLPAHSDPVSAVHFN-RD 163
Query: 260 RRLLASASDDGMIKIWELAN 279
L+ S+S DG+ +IW+ A+
Sbjct: 164 GSLIVSSSYDGLCRIWDTAS 183
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 130/277 (46%), Gaps = 33/277 (11%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HT+ V S +SP+G+ LA++S D IW G +E T+ GH+ + V+W++ L
Sbjct: 27 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWSSDSNL 84
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
L + DK++ IW+V G +C+ L+GH+ V ++P +++ S S+D ++++W
Sbjct: 85 LVSASDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-- 139
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
D C++T+ HS + A+ FN G +VS S D +IW
Sbjct: 140 ---DVKTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--------- 183
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 240
AS + L T+ + + V +S G I + D++++ + SK + +
Sbjct: 184 --ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 241
Query: 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
K + V +W + S S+D ++ IW L
Sbjct: 242 KYCIFANFSVTGGKW-------IVSGSEDNLVYIWNL 271
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 135/280 (48%), Gaps = 39/280 (13%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H + AWS LL +AS D T IW+ G +C+ TL+GH N V ++N L
Sbjct: 69 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNL 126
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
+ + D+SV IW+V G +C+ L H+ V V ++ ++ S SYD ++W
Sbjct: 127 IVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW-- 181
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
D+ + C++T+ + +N S + F+ G +++ + D T+K+W
Sbjct: 182 ---DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW----------- 224
Query: 182 GYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFF-VESKDDLIDGPSYK 237
Y+ + L T +G+ +++ ++S G I SG+ D+ V + +++K+
Sbjct: 225 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE--------- 275
Query: 238 MLLKKEKAHDMDVNSVQWSPGERRLLASA-SDDGMIKIWE 276
+++K + H V S P E + ++A +D IK+W+
Sbjct: 276 -IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 314
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 124/247 (50%), Gaps = 34/247 (13%)
Query: 33 VGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHA 92
V +Y TL GH V SV ++ +G LA+ DK + IW G +FE + GH
Sbjct: 14 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFE--KTISGHK 70
Query: 93 QDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN 152
+ V W ++L S S D T+K+W D + C++T+ GHS+ ++ +FN
Sbjct: 71 LGISDVAWSSDSNLLVSASDDKTLKIW-----DVSSGKCLKTL----KGHSNYVFCCNFN 121
Query: 153 AKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-II 211
+ + +VS S D +++IW +++G + L T+ + D + +VH++R+G +I
Sbjct: 122 PQSNLIVSGSFDESVRIW-----DVKTG------KCLKTLPAHSD-PVSAVHFNRDGSLI 169
Query: 212 ASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGM 271
S + D + + D G K L+ + + V+ V++SP + +LA A+ D
Sbjct: 170 VSSSYDGLCRIW-----DTASGQCLKTLIDDD---NPPVSFVKFSPNGKYILA-ATLDNT 220
Query: 272 IKIWELA 278
+K+W+ +
Sbjct: 221 LKLWDYS 227
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 32/193 (16%)
Query: 88 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 147
L GH + V V++ P + L S S D IK+W A D + +TIS GH I
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTIS----GHKLGIS 74
Query: 148 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR 207
+++++ + LVS SDD T+KIW +S + L T+ G H +F +++
Sbjct: 75 DVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYVFCCNFNP 122
Query: 208 E-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 266
+ +I SG+ D+SV+ + D+ G K L AH V++V ++ + L+ S+
Sbjct: 123 QSNLIVSGSFDESVRIW-----DVKTGKCLKTL----PAHSDPVSAVHFN-RDGSLIVSS 172
Query: 267 SDDGMIKIWELAN 279
S DG+ +IW+ A+
Sbjct: 173 SYDGLCRIWDTAS 185
Score = 34.3 bits (77), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
Query: 191 TISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMD 249
T++G H + + SV +S G +AS +AD ++ + DG K + H +
Sbjct: 23 TLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIW-----GAYDGKFEKTI----SGHKLG 72
Query: 250 VNSVQWSPGERRLLASASDDGMIKIWELAN 279
++ V WS + LL SASDD +KIW++++
Sbjct: 73 ISDVAWS-SDSNLLVSASDDKTLKIWDVSS 101
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 130/277 (46%), Gaps = 33/277 (11%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HT+ V S +SP+G+ LA++S D IW G +E T+ GH+ + V+W++ L
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWSSDSNL 101
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
L + DK++ IW+V G +C+ L+GH+ V ++P +++ S S+D ++++W
Sbjct: 102 LVSASDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-- 156
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
D C++T+ HS + A+ FN G +VS S D +IW
Sbjct: 157 ---DVKTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--------- 200
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 240
AS + L T+ + + V +S G I + D++++ + SK + +
Sbjct: 201 --ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 258
Query: 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
K + V +W + S S+D ++ IW L
Sbjct: 259 KYCIFANFSVTGGKW-------IVSGSEDNLVYIWNL 288
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 137/281 (48%), Gaps = 41/281 (14%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H + AWS LL +AS D T IW+ G +C+ TL+GH N V ++N L
Sbjct: 86 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNL 143
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
+ + D+SV IW+V G +C+ L H+ V V ++ ++ S SYD ++W
Sbjct: 144 IVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW-- 198
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
D+ + C++T+ + +N S + F+ G +++ + D T+K+W
Sbjct: 199 ---DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW----------- 241
Query: 182 GYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFF-VESKDDLIDGPSYK 237
Y+ + L T +G+ +++ ++S G I SG+ D+ V + +++K+
Sbjct: 242 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE--------- 292
Query: 238 MLLKKEKAHDMDVNSVQWSPGERRLLASAS--DDGMIKIWE 276
+++K + H V S P E ++ASA+ +D IK+W+
Sbjct: 293 -IVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWK 331
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 128/261 (49%), Gaps = 34/261 (13%)
Query: 19 ATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP 78
T S AT V +Y TL GH V SV ++ +G LA+ DK + IW
Sbjct: 17 PTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD 76
Query: 79 GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISES 138
G +FE + GH + V W ++L S S D T+K+W D + C++T+
Sbjct: 77 G-KFE--KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW-----DVSSGKCLKTL--- 125
Query: 139 NNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDR 198
GHS+ ++ +FN + + +VS S D +++IW +++G + L T+ + D
Sbjct: 126 -KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-----VKTG------KCLKTLPAHSD- 172
Query: 199 TIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP 257
+ +VH++R+G +I S + D + + D G K L+ + + V+ V++SP
Sbjct: 173 PVSAVHFNRDGSLIVSSSYDGLCRIW-----DTASGQCLKTLIDDD---NPPVSFVKFSP 224
Query: 258 GERRLLASASDDGMIKIWELA 278
+ +LA A+ D +K+W+ +
Sbjct: 225 NGKYILA-ATLDNTLKLWDYS 244
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 32/193 (16%)
Query: 88 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 147
L GH + V V++ P + L S S D IK+W A D + +TIS GH I
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTIS----GHKLGIS 91
Query: 148 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR 207
+++++ + LVS SDD T+KIW +S + L T+ G H +F +++
Sbjct: 92 DVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYVFCCNFNP 139
Query: 208 E-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 266
+ +I SG+ D+SV+ + D+ G K L AH V++V ++ + L+ S+
Sbjct: 140 QSNLIVSGSFDESVRIW-----DVKTGKCLKTL----PAHSDPVSAVHFN-RDGSLIVSS 189
Query: 267 SDDGMIKIWELAN 279
S DG+ +IW+ A+
Sbjct: 190 SYDGLCRIWDTAS 202
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
Query: 191 TISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMD 249
T++G H + + SV +S G +AS +AD ++ + DG K + H +
Sbjct: 40 TLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIW-----GAYDGKFEKTI----SGHKLG 89
Query: 250 VNSVQWSPGERRLLASASDDGMIKIWELAN 279
++ V WS + LL SASDD +KIW++++
Sbjct: 90 ISDVAWS-SDSNLLVSASDDKTLKIWDVSS 118
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 130/277 (46%), Gaps = 33/277 (11%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HT+ V S +SP+G+ LA++S D IW G +E T+ GH+ + V+W++ L
Sbjct: 21 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWSSDSNL 78
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
L + DK++ IW+V G +C+ L+GH+ V ++P +++ S S+D ++++W
Sbjct: 79 LVSASDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-- 133
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
D C++T+ HS + A+ FN G +VS S D +IW
Sbjct: 134 ---DVKTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--------- 177
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 240
AS + L T+ + + V +S G I + D++++ + SK + +
Sbjct: 178 --ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 235
Query: 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
K + V +W + S S+D ++ IW L
Sbjct: 236 KYCIFANFSVTGGKW-------IVSGSEDNLVYIWNL 265
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 135/280 (48%), Gaps = 39/280 (13%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H + AWS LL +AS D T IW+ G +C+ TL+GH N V ++N L
Sbjct: 63 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNL 120
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
+ + D+SV IW+V G +C+ L H+ V V ++ ++ S SYD ++W
Sbjct: 121 IVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW-- 175
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
D+ + C++T+ + +N S + F+ G +++ + D T+K+W
Sbjct: 176 ---DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW----------- 218
Query: 182 GYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFF-VESKDDLIDGPSYK 237
Y+ + L T +G+ +++ ++S G I SG+ D+ V + +++K+
Sbjct: 219 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE--------- 269
Query: 238 MLLKKEKAHDMDVNSVQWSPGERRLLASA-SDDGMIKIWE 276
+++K + H V S P E + ++A +D IK+W+
Sbjct: 270 -IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 308
Score = 77.4 bits (189), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 124/247 (50%), Gaps = 34/247 (13%)
Query: 33 VGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHA 92
V +Y TL GH V SV ++ +G LA+ DK + IW G +FE + GH
Sbjct: 8 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFE--KTISGHK 64
Query: 93 QDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN 152
+ V W ++L S S D T+K+W D + C++T+ GHS+ ++ +FN
Sbjct: 65 LGISDVAWSSDSNLLVSASDDKTLKIW-----DVSSGKCLKTL----KGHSNYVFCCNFN 115
Query: 153 AKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-II 211
+ + +VS S D +++IW +++G + L T+ + D + +VH++R+G +I
Sbjct: 116 PQSNLIVSGSFDESVRIW-----DVKTG------KCLKTLPAHSD-PVSAVHFNRDGSLI 163
Query: 212 ASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGM 271
S + D + + D G K L+ + + V+ V++SP + +LA A+ D
Sbjct: 164 VSSSYDGLCRIW-----DTASGQCLKTLIDDD---NPPVSFVKFSPNGKYILA-ATLDNT 214
Query: 272 IKIWELA 278
+K+W+ +
Sbjct: 215 LKLWDYS 221
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 32/193 (16%)
Query: 88 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 147
L GH + V V++ P + L S S D IK+W A D + +TIS GH I
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTIS----GHKLGIS 68
Query: 148 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR 207
+++++ + LVS SDD T+KIW +S + L T+ G H +F +++
Sbjct: 69 DVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYVFCCNFNP 116
Query: 208 E-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 266
+ +I SG+ D+SV+ + D+ G K L AH V++V ++ + L+ S+
Sbjct: 117 QSNLIVSGSFDESVRIW-----DVKTGKCLKTL----PAHSDPVSAVHFN-RDGSLIVSS 166
Query: 267 SDDGMIKIWELAN 279
S DG+ +IW+ A+
Sbjct: 167 SYDGLCRIWDTAS 179
Score = 34.3 bits (77), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
Query: 191 TISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMD 249
T++G H + + SV +S G +AS +AD ++ + DG K + H +
Sbjct: 17 TLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIW-----GAYDGKFEKTI----SGHKLG 66
Query: 250 VNSVQWSPGERRLLASASDDGMIKIWELAN 279
++ V WS + LL SASDD +KIW++++
Sbjct: 67 ISDVAWS-SDSNLLVSASDDKTLKIWDVSS 95
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 130/277 (46%), Gaps = 33/277 (11%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HT+ V S +SP+G+ LA++S D IW G +E T+ GH+ + V+W++ L
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWSSDSNL 79
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
L + DK++ IW+V G +C+ L+GH+ V ++P +++ S S+D ++++W
Sbjct: 80 LVSASDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-- 134
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
D C++T+ HS + A+ FN G +VS S D +IW
Sbjct: 135 ---DVKTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--------- 178
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 240
AS + L T+ + + V +S G I + D++++ + SK + +
Sbjct: 179 --ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 236
Query: 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
K + V +W + S S+D ++ IW L
Sbjct: 237 KYCIFANFSVTGGKW-------IVSGSEDNLVYIWNL 266
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 131/279 (46%), Gaps = 37/279 (13%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H + AWS LL +AS D T IW+ G +C+ TL+GH N V ++N L
Sbjct: 64 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNL 121
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
+ + D+SV IW+V G +C+ L H+ V V ++ ++ S SYD ++W
Sbjct: 122 IVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW-- 176
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
D+ + C++T+ + +N S + F+ G +++ + D T+K+W
Sbjct: 177 ---DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW----------- 219
Query: 182 GYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFFVESKDDLIDGPSYKM 238
Y+ + L T +G+ +++ ++S G I SG+ D+ V + K
Sbjct: 220 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---------NLQTKE 270
Query: 239 LLKKEKAHDMDVNSVQWSPGERRLLASA-SDDGMIKIWE 276
+++K + H V S P E + ++A +D IK+W+
Sbjct: 271 IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 309
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 124/247 (50%), Gaps = 34/247 (13%)
Query: 33 VGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHA 92
V +Y TL GH V SV ++ +G LA+ DK + IW G +FE + GH
Sbjct: 9 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFE--KTISGHK 65
Query: 93 QDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN 152
+ V W ++L S S D T+K+W D + C++T+ GHS+ ++ +FN
Sbjct: 66 LGISDVAWSSDSNLLVSASDDKTLKIW-----DVSSGKCLKTL----KGHSNYVFCCNFN 116
Query: 153 AKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-II 211
+ + +VS S D +++IW +++G + L T+ + D + +VH++R+G +I
Sbjct: 117 PQSNLIVSGSFDESVRIW-----DVKTG------KCLKTLPAHSD-PVSAVHFNRDGSLI 164
Query: 212 ASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGM 271
S + D + + D G K L+ + + V+ V++SP + +LA A+ D
Sbjct: 165 VSSSYDGLCRIW-----DTASGQCLKTLIDDD---NPPVSFVKFSPNGKYILA-ATLDNT 215
Query: 272 IKIWELA 278
+K+W+ +
Sbjct: 216 LKLWDYS 222
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 32/193 (16%)
Query: 88 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 147
L GH + V V++ P + L S S D IK+W A D + +TIS GH I
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTIS----GHKLGIS 69
Query: 148 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR 207
+++++ + LVS SDD T+KIW +S + L T+ G H +F +++
Sbjct: 70 DVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYVFCCNFNP 117
Query: 208 E-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 266
+ +I SG+ D+SV+ + D+ G K L AH V++V ++ + L+ S+
Sbjct: 118 QSNLIVSGSFDESVRIW-----DVKTGKCLKTL----PAHSDPVSAVHFN-RDGSLIVSS 167
Query: 267 SDDGMIKIWELAN 279
S DG+ +IW+ A+
Sbjct: 168 SYDGLCRIWDTAS 180
Score = 34.3 bits (77), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
Query: 191 TISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMD 249
T++G H + + SV +S G +AS +AD ++ + DG K + H +
Sbjct: 18 TLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIW-----GAYDGKFEKTI----SGHKLG 67
Query: 250 VNSVQWSPGERRLLASASDDGMIKIWELAN 279
++ V WS + LL SASDD +KIW++++
Sbjct: 68 ISDVAWS-SDSNLLVSASDDKTLKIWDVSS 96
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 130/277 (46%), Gaps = 33/277 (11%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HT+ V S +SP+G+ LA++S D IW G +E T+ GH+ + V+W++ L
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWSSDSNL 85
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
L + DK++ IW+V G +C+ L+GH+ V ++P +++ S S+D ++++W
Sbjct: 86 LVSASDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-- 140
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
D C++T+ HS + A+ FN G +VS S D +IW
Sbjct: 141 ---DVKTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--------- 184
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 240
AS + L T+ + + V +S G I + D++++ + SK + +
Sbjct: 185 --ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 242
Query: 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
K + V +W + S S+D ++ IW L
Sbjct: 243 KYCIFANFSVTGGKW-------IVSGSEDNLVYIWNL 272
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 135/280 (48%), Gaps = 39/280 (13%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H + AWS LL +AS D T IW+ G +C+ TL+GH N V ++N L
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNL 127
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
+ + D+SV IW+V G +C+ L H+ V V ++ ++ S SYD ++W
Sbjct: 128 IVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW-- 182
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
D+ + C++T+ + +N S + F+ G +++ + D T+K+W
Sbjct: 183 ---DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW----------- 225
Query: 182 GYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFF-VESKDDLIDGPSYK 237
Y+ + L T +G+ +++ ++S G I SG+ D+ V + +++K+
Sbjct: 226 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE--------- 276
Query: 238 MLLKKEKAHDMDVNSVQWSPGERRLLASA-SDDGMIKIWE 276
+++K + H V S P E + ++A +D IK+W+
Sbjct: 277 -IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 315
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 124/247 (50%), Gaps = 34/247 (13%)
Query: 33 VGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHA 92
V +Y TL GH V SV ++ +G LA+ DK + IW G +FE + GH
Sbjct: 15 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFE--KTISGHK 71
Query: 93 QDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN 152
+ V W ++L S S D T+K+W D + C++T+ GHS+ ++ +FN
Sbjct: 72 LGISDVAWSSDSNLLVSASDDKTLKIW-----DVSSGKCLKTL----KGHSNYVFCCNFN 122
Query: 153 AKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-II 211
+ + +VS S D +++IW +++G + L T+ + D + +VH++R+G +I
Sbjct: 123 PQSNLIVSGSFDESVRIW-----DVKTG------KCLKTLPAHSD-PVSAVHFNRDGSLI 170
Query: 212 ASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGM 271
S + D + + D G K L+ + + V+ V++SP + +LA A+ D
Sbjct: 171 VSSSYDGLCRIW-----DTASGQCLKTLIDDD---NPPVSFVKFSPNGKYILA-ATLDNT 221
Query: 272 IKIWELA 278
+K+W+ +
Sbjct: 222 LKLWDYS 228
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 32/193 (16%)
Query: 88 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 147
L GH + V V++ P + L S S D IK+W A D + +TIS GH I
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTIS----GHKLGIS 75
Query: 148 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR 207
+++++ + LVS SDD T+KIW +S + L T+ G H +F +++
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYVFCCNFNP 123
Query: 208 E-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 266
+ +I SG+ D+SV+ + D+ G K L AH V++V ++ + L+ S+
Sbjct: 124 QSNLIVSGSFDESVRIW-----DVKTGKCLKTL----PAHSDPVSAVHFN-RDGSLIVSS 173
Query: 267 SDDGMIKIWELAN 279
S DG+ +IW+ A+
Sbjct: 174 SYDGLCRIWDTAS 186
Score = 34.3 bits (77), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
Query: 191 TISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMD 249
T++G H + + SV +S G +AS +AD ++ + DG K + H +
Sbjct: 24 TLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIW-----GAYDGKFEKTI----SGHKLG 73
Query: 250 VNSVQWSPGERRLLASASDDGMIKIWELAN 279
++ V WS + LL SASDD +KIW++++
Sbjct: 74 ISDVAWS-SDSNLLVSASDDKTLKIWDVSS 102
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 130/277 (46%), Gaps = 33/277 (11%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HT+ V S +SP+G+ LA++S D IW G +E T+ GH+ + V+W++ L
Sbjct: 18 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWSSDSNL 75
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
L + DK++ IW+V G +C+ L+GH+ V ++P +++ S S+D ++++W
Sbjct: 76 LVSASDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-- 130
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
D C++T+ HS + A+ FN G +VS S D +IW
Sbjct: 131 ---DVKTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--------- 174
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 240
AS + L T+ + + V +S G I + D++++ + SK + +
Sbjct: 175 --ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 232
Query: 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
K + V +W + S S+D ++ IW L
Sbjct: 233 KYCIFANFSVTGGKW-------IVSGSEDNLVYIWNL 262
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 131/279 (46%), Gaps = 37/279 (13%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H + AWS LL +AS D T IW+ G +C+ TL+GH N V ++N L
Sbjct: 60 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNL 117
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
+ + D+SV IW+V G +C+ L H+ V V ++ ++ S SYD ++W
Sbjct: 118 IVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW-- 172
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
D+ + C++T+ + +N S + F+ G +++ + D T+K+W
Sbjct: 173 ---DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW----------- 215
Query: 182 GYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFFVESKDDLIDGPSYKM 238
Y+ + L T +G+ +++ ++S G I SG+ D+ V + K
Sbjct: 216 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---------NLQTKE 266
Query: 239 LLKKEKAHDMDVNSVQWSPGERRLLASA-SDDGMIKIWE 276
+++K + H V S P E + ++A +D IK+W+
Sbjct: 267 IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 305
Score = 77.4 bits (189), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 124/247 (50%), Gaps = 34/247 (13%)
Query: 33 VGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHA 92
V +Y TL GH V SV ++ +G LA+ DK + IW G +FE + GH
Sbjct: 5 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFE--KTISGHK 61
Query: 93 QDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN 152
+ V W ++L S S D T+K+W D + C++T+ GHS+ ++ +FN
Sbjct: 62 LGISDVAWSSDSNLLVSASDDKTLKIW-----DVSSGKCLKTL----KGHSNYVFCCNFN 112
Query: 153 AKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-II 211
+ + +VS S D +++IW +++G + L T+ + D + +VH++R+G +I
Sbjct: 113 PQSNLIVSGSFDESVRIW-----DVKTG------KCLKTLPAHSD-PVSAVHFNRDGSLI 160
Query: 212 ASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGM 271
S + D + + D G K L+ + + V+ V++SP + +LA A+ D
Sbjct: 161 VSSSYDGLCRIW-----DTASGQCLKTLIDDD---NPPVSFVKFSPNGKYILA-ATLDNT 211
Query: 272 IKIWELA 278
+K+W+ +
Sbjct: 212 LKLWDYS 218
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 32/193 (16%)
Query: 88 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 147
L GH + V V++ P + L S S D IK+W A D + +TIS GH I
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTIS----GHKLGIS 65
Query: 148 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR 207
+++++ + LVS SDD T+KIW +S + L T+ G H +F +++
Sbjct: 66 DVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYVFCCNFNP 113
Query: 208 E-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 266
+ +I SG+ D+SV+ + D+ G K L AH V++V ++ + L+ S+
Sbjct: 114 QSNLIVSGSFDESVRIW-----DVKTGKCLKTL----PAHSDPVSAVHFN-RDGSLIVSS 163
Query: 267 SDDGMIKIWELAN 279
S DG+ +IW+ A+
Sbjct: 164 SYDGLCRIWDTAS 176
Score = 34.3 bits (77), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
Query: 191 TISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMD 249
T++G H + + SV +S G +AS +AD ++ + DG K + H +
Sbjct: 14 TLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIW-----GAYDGKFEKTI----SGHKLG 63
Query: 250 VNSVQWSPGERRLLASASDDGMIKIWELAN 279
++ V WS + LL SASDD +KIW++++
Sbjct: 64 ISDVAWS-SDSNLLVSASDDKTLKIWDVSS 92
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 130/277 (46%), Gaps = 33/277 (11%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HT+ V S +SP+G+ LA++S D IW G +E T+ GH+ + V+W++ L
Sbjct: 46 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWSSDSNL 103
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
L + DK++ IW+V G +C+ L+GH+ V ++P +++ S S+D ++++W
Sbjct: 104 LVSASDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-- 158
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
D C++T+ HS + A+ FN G +VS S D +IW
Sbjct: 159 ---DVKTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--------- 202
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 240
AS + L T+ + + V +S G I + D++++ + SK + +
Sbjct: 203 --ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 260
Query: 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
K + V +W + S S+D ++ IW L
Sbjct: 261 KYCIFANFSVTGGKW-------IVSGSEDNLVYIWNL 290
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 135/281 (48%), Gaps = 41/281 (14%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H + AWS LL +AS D T IW+ G +C+ TL+GH N V ++N L
Sbjct: 88 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNL 145
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
+ + D+SV IW+V G +C+ L H+ V V ++ ++ S SYD ++W
Sbjct: 146 IVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW-- 200
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
D+ + C++T+ + +N S + F+ G +++ + D T+K+W
Sbjct: 201 ---DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW----------- 243
Query: 182 GYASWRHLCTISGYHDRT--IFSVHWSREGI-IASGAADDSVQFF-VESKDDLIDGPSYK 237
Y+ + L T +G+ + IF+ G I SG+ D+ V + +++K+
Sbjct: 244 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE--------- 294
Query: 238 MLLKKEKAHDMDVNSVQWSPGERRLLASAS--DDGMIKIWE 276
+++K + H V S P E ++ASA+ +D IK+W+
Sbjct: 295 -IVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWK 333
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 128/261 (49%), Gaps = 34/261 (13%)
Query: 19 ATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP 78
T S AT V +Y TL GH V SV ++ +G LA+ DK + IW
Sbjct: 19 PTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD 78
Query: 79 GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISES 138
G +FE + GH + V W ++L S S D T+K+W D + C++T+
Sbjct: 79 G-KFE--KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW-----DVSSGKCLKTL--- 127
Query: 139 NNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDR 198
GHS+ ++ +FN + + +VS S D +++IW +++G + L T+ + D
Sbjct: 128 -KGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-----DVKTG------KCLKTLPAHSD- 174
Query: 199 TIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP 257
+ +VH++R+G +I S + D + + D G K L+ + + V+ V++SP
Sbjct: 175 PVSAVHFNRDGSLIVSSSYDGLCRIW-----DTASGQCLKTLIDDD---NPPVSFVKFSP 226
Query: 258 GERRLLASASDDGMIKIWELA 278
+ +LA A+ D +K+W+ +
Sbjct: 227 NGKYILA-ATLDNTLKLWDYS 246
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 32/193 (16%)
Query: 88 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 147
L GH + V V++ P + L S S D IK+W A D + +TIS GH I
Sbjct: 43 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTIS----GHKLGIS 93
Query: 148 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR 207
+++++ + LVS SDD T+KIW +S + L T+ G H +F +++
Sbjct: 94 DVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYVFCCNFNP 141
Query: 208 E-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 266
+ +I SG+ D+SV+ + D+ G K L AH V++V ++ + L+ S+
Sbjct: 142 QSNLIVSGSFDESVRIW-----DVKTGKCLKTL----PAHSDPVSAVHFN-RDGSLIVSS 191
Query: 267 SDDGMIKIWELAN 279
S DG+ +IW+ A+
Sbjct: 192 SYDGLCRIWDTAS 204
Score = 34.3 bits (77), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
Query: 191 TISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMD 249
T++G H + + SV +S G +AS +AD ++ + DG K + H +
Sbjct: 42 TLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIW-----GAYDGKFEKTI----SGHKLG 91
Query: 250 VNSVQWSPGERRLLASASDDGMIKIWELAN 279
++ V WS + LL SASDD +KIW++++
Sbjct: 92 ISDVAWS-SDSNLLVSASDDKTLKIWDVSS 120
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 130/277 (46%), Gaps = 33/277 (11%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HT+ V S +SP+G+ LA++S D IW G +E T+ GH+ + V+W++ L
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWSSDSNL 85
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
L + DK++ IW+V G +C+ L+GH+ V ++P +++ S S+D ++++W
Sbjct: 86 LVSASDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-- 140
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
D C++T+ HS + A+ FN G +VS S D +IW
Sbjct: 141 ---DVKTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--------- 184
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 240
AS + L T+ + + V +S G I + D++++ + SK + +
Sbjct: 185 --ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 242
Query: 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
K + V +W + S S+D ++ IW L
Sbjct: 243 KYCIFANFSVTGGKW-------IVSGSEDNLVYIWNL 272
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 135/280 (48%), Gaps = 39/280 (13%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H + AWS LL +AS D T IW+ G +C+ TL+GH N V ++N L
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNL 127
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
+ + D+SV IW+V G +C+ L H+ V V ++ ++ S SYD ++W
Sbjct: 128 IVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW-- 182
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
D+ + C++T+ + +N S + F+ G +++ + D T+K+W
Sbjct: 183 ---DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW----------- 225
Query: 182 GYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFF-VESKDDLIDGPSYK 237
Y+ + L T +G+ +++ ++S G I SG+ D+ V + +++K+
Sbjct: 226 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE--------- 276
Query: 238 MLLKKEKAHDMDVNSVQWSPGERRLLASA-SDDGMIKIWE 276
+++K + H V S P E + ++A +D IK+W+
Sbjct: 277 -IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 315
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 124/247 (50%), Gaps = 34/247 (13%)
Query: 33 VGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHA 92
V +Y TL GH V SV ++ +G LA+ DK + IW G +FE + GH
Sbjct: 15 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFE--KTISGHK 71
Query: 93 QDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN 152
+ V W ++L S S D T+K+W D + C++T+ GHS+ ++ +FN
Sbjct: 72 LGISDVAWSSDSNLLVSASDDKTLKIW-----DVSSGKCLKTL----KGHSNYVFCCNFN 122
Query: 153 AKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-II 211
+ + +VS S D +++IW +++G + L T+ + D + +VH++R+G +I
Sbjct: 123 PQSNLIVSGSFDESVRIW-----DVKTG------KCLKTLPAHSD-PVSAVHFNRDGSLI 170
Query: 212 ASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGM 271
S + D + + D G K L+ + + V+ V++SP + +LA A+ D
Sbjct: 171 VSSSYDGLCRIW-----DTASGQCLKTLIDDD---NPPVSFVKFSPNGKYILA-ATLDNT 221
Query: 272 IKIWELA 278
+K+W+ +
Sbjct: 222 LKLWDYS 228
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 32/193 (16%)
Query: 88 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 147
L GH + V V++ P + L S S D IK+W A D + +TIS GH I
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTIS----GHKLGIS 75
Query: 148 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR 207
+++++ + LVS SDD T+KIW +S + L T+ G H +F +++
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYVFCCNFNP 123
Query: 208 E-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 266
+ +I SG+ D+SV+ + D+ G K L AH V++V ++ + L+ S+
Sbjct: 124 QSNLIVSGSFDESVRIW-----DVKTGKCLKTL----PAHSDPVSAVHFN-RDGSLIVSS 173
Query: 267 SDDGMIKIWELAN 279
S DG+ +IW+ A+
Sbjct: 174 SYDGLCRIWDTAS 186
Score = 34.3 bits (77), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
Query: 191 TISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMD 249
T++G H + + SV +S G +AS +AD ++ + DG K + H +
Sbjct: 24 TLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIW-----GAYDGKFEKTI----SGHKLG 73
Query: 250 VNSVQWSPGERRLLASASDDGMIKIWELAN 279
++ V WS + LL SASDD +KIW++++
Sbjct: 74 ISDVAWS-SDSNLLVSASDDKTLKIWDVSS 102
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 129/277 (46%), Gaps = 33/277 (11%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HT+ V S +SP+G+ LA +S D IW G +E T+ GH+ + V+W++ L
Sbjct: 25 HTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWSSDSNL 82
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
L + DK++ IW+V G +C+ L+GH+ V ++P +++ S S+D ++++W
Sbjct: 83 LVSASDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-- 137
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
D C++T+ HS + A+ FN G +VS S D +IW
Sbjct: 138 ---DVKTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--------- 181
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 240
AS + L T+ + + V +S G I + D++++ + SK + +
Sbjct: 182 --ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 239
Query: 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
K + V +W + S S+D ++ IW L
Sbjct: 240 KYCIFANFSVTGGKW-------IVSGSEDNLVYIWNL 269
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 131/279 (46%), Gaps = 37/279 (13%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H + AWS LL +AS D T IW+ G +C+ TL+GH N V ++N L
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNL 124
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
+ + D+SV IW+V G +C+ L H+ V V ++ ++ S SYD ++W
Sbjct: 125 IVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW-- 179
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
D+ + C++T+ + +N S + F+ G +++ + D T+K+W
Sbjct: 180 ---DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW----------- 222
Query: 182 GYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFFVESKDDLIDGPSYKM 238
Y+ + L T +G+ +++ ++S G I SG+ D+ V + K
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---------NLQTKE 273
Query: 239 LLKKEKAHDMDVNSVQWSPGERRLLASA-SDDGMIKIWE 276
+++K + H V S P E + ++A +D IK+W+
Sbjct: 274 IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 312
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 124/249 (49%), Gaps = 34/249 (13%)
Query: 31 EDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQG 90
E V +Y TL GH V SV ++ +G LA DK + IW G +FE + G
Sbjct: 10 EFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDG-KFE--KTISG 66
Query: 91 HAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALS 150
H + V W ++L S S D T+K+W D + C++T+ GHS+ ++ +
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIW-----DVSSGKCLKTL----KGHSNYVFCCN 117
Query: 151 FNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG- 209
FN + + +VS S D +++IW +++G + L T+ + D + +VH++R+G
Sbjct: 118 FNPQSNLIVSGSFDESVRIW-----DVKTG------KCLKTLPAHSD-PVSAVHFNRDGS 165
Query: 210 IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDD 269
+I S + D + + D G K L+ + + V+ V++SP + +LA A+ D
Sbjct: 166 LIVSSSYDGLCRIW-----DTASGQCLKTLIDDD---NPPVSFVKFSPNGKYILA-ATLD 216
Query: 270 GMIKIWELA 278
+K+W+ +
Sbjct: 217 NTLKLWDYS 225
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 98/193 (50%), Gaps = 32/193 (16%)
Query: 88 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 147
L GH + V V++ P + L + S D IK+W A D + +TIS GH I
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFE-----KTIS----GHKLGIS 72
Query: 148 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR 207
+++++ + LVS SDD T+KIW +S + L T+ G H +F +++
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYVFCCNFNP 120
Query: 208 E-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 266
+ +I SG+ D+SV+ + D+ G K L AH V++V ++ + L+ S+
Sbjct: 121 QSNLIVSGSFDESVRIW-----DVKTGKCLKTL----PAHSDPVSAVHFNR-DGSLIVSS 170
Query: 267 SDDGMIKIWELAN 279
S DG+ +IW+ A+
Sbjct: 171 SYDGLCRIWDTAS 183
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
Query: 191 TISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMD 249
T++G H + + SV +S G +A+ +AD ++ + DG K + H +
Sbjct: 21 TLAG-HTKAVSSVKFSPNGEWLAASSADKLIKIW-----GAYDGKFEKTI----SGHKLG 70
Query: 250 VNSVQWSPGERRLLASASDDGMIKIWELAN 279
++ V WS + LL SASDD +KIW++++
Sbjct: 71 ISDVAWS-SDSNLLVSASDDKTLKIWDVSS 99
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 131/261 (50%), Gaps = 42/261 (16%)
Query: 17 LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEV 76
++ + S D T +W G EC+ TL GH + V+ + + + + RD ++ +W++
Sbjct: 171 IIISGSTDRTLKVWNAETG--ECIHTLYGHTSTVRCMHLHEKRVVSGS--RDATLRVWDI 226
Query: 77 MPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTIS 136
G +C+ VL GH V+ VQ+ V S +YD +KVW D + C+ T+
Sbjct: 227 ETG---QCLHVLMGHVAAVRCVQYDGRRVV--SGAYDFMVKVW-----DPETETCLHTL- 275
Query: 137 ESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYH 196
GH++ +++L F+ G +VS S D +I++W +++G+ + T++G+
Sbjct: 276 ---QGHTNRVYSLQFD--GIHVVSGSLDTSIRVWD-----VETGNC------IHTLTGHQ 319
Query: 197 DRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWS 256
T S ++ I+ SG AD +V+ + D+ G + L K H V +Q++
Sbjct: 320 SLT--SGMELKDNILVSGNADSTVKIW-----DIKTGQCLQTLQGPNK-HQSAVTCLQFN 371
Query: 257 PGERRLLASASDDGMIKIWEL 277
+ + ++SDDG +K+W+L
Sbjct: 372 ---KNFVITSSDDGTVKLWDL 389
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 108/245 (44%), Gaps = 46/245 (18%)
Query: 35 GDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQD 94
G+ + L+GH++ V + G + + D ++ +W + G +C+ L GH
Sbjct: 106 GELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTG---KCLRTLVGHTGG 161
Query: 95 VKMVQWHPTM--DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN 152
V W M +++ S S D T+KVW AE + C+ T+ GH+ST+ + +
Sbjct: 162 V----WSSQMRDNIIISGSTDRTLKVWNAETGE-----CIHTLY----GHTSTVRCMHLH 208
Query: 153 AKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIA 212
K ++VS S D T+++W DI Q L + G H + V + ++
Sbjct: 209 EK--RVVSGSRDATLRVW--DIETGQC---------LHVLMG-HVAAVRCVQYDGRRVV- 253
Query: 213 SGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMI 272
SGA D F V+ D P + L + H V S+Q+ + S S D I
Sbjct: 254 SGAYD----FMVKVWD-----PETETCLHTLQGHTNRVYSLQFDGIH---VVSGSLDTSI 301
Query: 273 KIWEL 277
++W++
Sbjct: 302 RVWDV 306
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 131/288 (45%), Gaps = 41/288 (14%)
Query: 12 SPSGKLLATASFDATT-CIWEDVGGDYECVATLEGHENEVKSVSWNA--SGTLLATCGRD 68
+PS +L FD T D G+ L GH+ E +SWN+ SG LL + D
Sbjct: 146 TPSSDVLV---FDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLL-SASDD 201
Query: 69 KSVWIWEVMPGNE----FECVSVLQGHAQDVKMVQWHPTMDVLF-SCSYDNTIKVWWAED 123
+V +W++ G + + ++ GH+ V+ V WH + LF S + D + +W D
Sbjct: 202 HTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIW---D 258
Query: 124 TDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC-SDDLTIKIWGADITRMQSGDG 182
T S+ S + H++ + LSFN + +++ S D T+ +W +++
Sbjct: 259 TRSN---TTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK---- 311
Query: 183 YASWRHLCTISGYHDRTIFSVHWS--REGIIASGAADDSVQFF-------VESKDDLIDG 233
L T + D IF VHWS E I+AS D + + +S +D DG
Sbjct: 312 ------LHTFESHKDE-IFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDG 364
Query: 234 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANTL 281
P LL H ++ W+P E ++ S S+D +++IW++A +
Sbjct: 365 PP--ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENI 410
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 113/276 (40%), Gaps = 36/276 (13%)
Query: 21 ASFDATTCI--------WEDVGGDYECVATLEGHENEVKSVSWNASGT-LLATCGRDKSV 71
A FDA+ C + V G EC + HE EV + ++AT V
Sbjct: 93 AQFDASHCDSDKGEFGGFGSVTGKIECEIKI-NHEGEVNRARYMPQNPHIIATKTPSSDV 151
Query: 72 WIWE-----VMPGNEFECVS--VLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAED 123
+++ P EC L+GH ++ + W+ + L S S D+T+ +W
Sbjct: 152 LVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINA 211
Query: 124 TDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV-SCSDDLTIKIWGADITRMQSGDG 182
+ + GHS+ + ++++ + L S +DD + IW + S
Sbjct: 212 GPKEG--KIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTR-SNTTSKPS 268
Query: 183 YASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKK 242
+ H ++ S + E I+A+G+AD +V + D + K+ L
Sbjct: 269 HLVDAHTAEVN------CLSFNPYSEFILATGSADKTVALW--------DLRNLKLKLHT 314
Query: 243 EKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278
++H ++ V WSP +LAS+ D + +W+L+
Sbjct: 315 FESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 123/267 (46%), Gaps = 37/267 (13%)
Query: 32 DVGGDYECVATLEGHENEVKSVSWNA--SGTLLATCGRDKSVWIWEV--MP--GNEFECV 85
D G+ L GH+ E +SWN SG LL + D ++ +W++ +P G +
Sbjct: 162 DPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLL-SASDDHTICLWDISAVPKEGKVVDAK 220
Query: 86 SVLQGHAQDVKMVQWHPTMDVLF-SCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSS 144
++ GH V+ V WH + LF S + D + +W DT S+N S S + H++
Sbjct: 221 TIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIW---DTRSNN---TSKPSHSVDAHTA 274
Query: 145 TIWALSFNAKGDKLVSC-SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSV 203
+ LSFN + +++ S D T+ +W +++ L + + D IF V
Sbjct: 275 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK----------LHSFESHKDE-IFQV 323
Query: 204 HWS--REGIIASGAADDSVQFF-------VESKDDLIDGPSYKMLLKKEKAHDMDVNSVQ 254
WS E I+AS D + + +S +D DGP LL H ++
Sbjct: 324 QWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPP--ELLFIHGGHTAKISDFS 381
Query: 255 WSPGERRLLASASDDGMIKIWELANTL 281
W+P E ++ S S+D ++++W++A +
Sbjct: 382 WNPNEPWVICSVSEDNIMQVWQMAENI 408
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 2 HTRTVRSCAWSP-SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG- 59
HT V +++P S +LAT S D T +W D+ + + E H++E+ V W+
Sbjct: 272 HTAEVNCLSFNPYSEFILATGSADKTVALW-DLRNLKLKLHSFESHKDEIFQVQWSPHNE 330
Query: 60 TLLATCGRDKSVWIWEVMPGNE-----------FECVSVLQGHAQDVKMVQWHPTMD-VL 107
T+LA+ G D+ + +W++ E E + + GH + W+P V+
Sbjct: 331 TILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVI 390
Query: 108 FSCSYDNTIKVW 119
S S DN ++VW
Sbjct: 391 CSVSEDNIMQVW 402
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 129/288 (44%), Gaps = 41/288 (14%)
Query: 12 SPSGKLLATASFDATT-CIWEDVGGDYECVATLEGHENEVKSVSWNA--SGTLLATCGRD 68
+PS +L FD T D G+ L GH+ E +SWN+ SG LL + D
Sbjct: 146 TPSSDVLV---FDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLL-SASDD 201
Query: 69 KSVWIWEVMPGNE----FECVSVLQGHAQDVKMVQWHPTMDVLF-SCSYDNTIKVWWAED 123
+V +W++ G + + ++ GH+ V+ V WH + LF S + D + +W D
Sbjct: 202 HTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIW---D 258
Query: 124 TDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC-SDDLTIKIWGADITRMQSGDG 182
T S+ S + H++ + LSFN + +++ S D T+ +W +++
Sbjct: 259 TRSN---TTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK---- 311
Query: 183 YASWRHLCTISGYHDRTIFSVHWS--REGIIASGAADDSVQFF-------VESKDDLIDG 233
L T + D IF VHWS E I+AS D + + +S +D DG
Sbjct: 312 ------LHTFESHKDE-IFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDG 364
Query: 234 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANTL 281
P LL H ++ W+P E ++ S S+D + +IW+ A +
Sbjct: 365 PP--ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIWQXAENI 410
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 113/276 (40%), Gaps = 36/276 (13%)
Query: 21 ASFDATTCI--------WEDVGGDYECVATLEGHENEVKSVSWNASGT-LLATCGRDKSV 71
A FDA+ C + V G EC + HE EV + ++AT V
Sbjct: 93 AQFDASHCDSDKGEFGGFGSVTGKIECEIKI-NHEGEVNRARYXPQNPHIIATKTPSSDV 151
Query: 72 WIWE-----VMPGNEFECVS--VLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAED 123
+++ P EC L+GH ++ + W+ + L S S D+T+ +W
Sbjct: 152 LVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINA 211
Query: 124 TDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV-SCSDDLTIKIWGADITRMQSGDG 182
+ + GHS+ + ++++ + L S +DD + IW + S
Sbjct: 212 GPKEG--KIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTR-SNTTSKPS 268
Query: 183 YASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKK 242
+ H ++ S + E I+A+G+AD +V + D + K+ L
Sbjct: 269 HLVDAHTAEVN------CLSFNPYSEFILATGSADKTVALW--------DLRNLKLKLHT 314
Query: 243 EKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278
++H ++ V WSP +LAS+ D + +W+L+
Sbjct: 315 FESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 116/255 (45%), Gaps = 35/255 (13%)
Query: 43 LEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEV--MPGNE--FECVSVLQGHAQDVKM 97
L GH+ E +SWN + L + D ++ +W++ P + ++ GH V+
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 240
Query: 98 VQWHPTMDVLF-SCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD 156
V WH + LF S + D + +W DT ++N S + + H++ + LSFN +
Sbjct: 241 VAWHLLHESLFGSVADDQKLMIW---DTRNNN---TSKPSHTVDAHTAEVNCLSFNPYSE 294
Query: 157 KLVSC-SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS--REGIIAS 213
+++ S D T+ +W +++ L + + D IF V WS E I+AS
Sbjct: 295 FILATGSADKTVALWDLRNLKLK----------LHSFESHKDE-IFQVQWSPHNETILAS 343
Query: 214 GAADDSVQFF-------VESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 266
D + + +S +D DGP LL H ++ W+P E ++ S
Sbjct: 344 SGTDRRLHVWDLSKIGEEQSTEDAEDGPP--ELLFIHGGHTAKISDFSWNPNEPWIICSV 401
Query: 267 SDDGMIKIWELANTL 281
S+D ++++W++A +
Sbjct: 402 SEDNIMQVWQMAENV 416
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 105/242 (43%), Gaps = 24/242 (9%)
Query: 44 EGHENEVKSVSWNASGTLLATCGRDKSVWIW-----EVMPGNEFECVSVLQGHAQDVKMV 98
EG N + + NA T D V+ + + P E + L+GH ++ +
Sbjct: 132 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGL 191
Query: 99 QWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK 157
W+P ++ L S S D+TI +W T + H V GH++ + ++++ +
Sbjct: 192 SWNPNLNGYLLSASDDHTICLWDINATPKE--HRVIDAKNIFTGHTAVVEDVAWHLLHES 249
Query: 158 LV-SCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAA 216
L S +DD + IW S + H ++ S + E I+A+G+A
Sbjct: 250 LFGSVADDQKLMIWDTR-NNNTSKPSHTVDAHTAEVN------CLSFNPYSEFILATGSA 302
Query: 217 DDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276
D +V + D + K+ L ++H ++ VQWSP +LAS+ D + +W+
Sbjct: 303 DKTVALW--------DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 354
Query: 277 LA 278
L+
Sbjct: 355 LS 356
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 2 HTRTVRSCAWSP-SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG- 59
HT V +++P S +LAT S D T +W D+ + + E H++E+ V W+
Sbjct: 280 HTAEVNCLSFNPYSEFILATGSADKTVALW-DLRNLKLKLHSFESHKDEIFQVQWSPHNE 338
Query: 60 TLLATCGRDKSVWIWEVMPGNE-----------FECVSVLQGHAQDVKMVQWHPTMD-VL 107
T+LA+ G D+ + +W++ E E + + GH + W+P ++
Sbjct: 339 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWII 398
Query: 108 FSCSYDNTIKVW 119
S S DN ++VW
Sbjct: 399 CSVSEDNIMQVW 410
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 116/255 (45%), Gaps = 35/255 (13%)
Query: 43 LEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEV--MPGNE--FECVSVLQGHAQDVKM 97
L GH+ E +SWN + L + D ++ +W++ P + ++ GH V+
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 236
Query: 98 VQWHPTMDVLF-SCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD 156
V WH + LF S + D + +W DT ++N S + + H++ + LSFN +
Sbjct: 237 VAWHLLHESLFGSVADDQKLMIW---DTRNNN---TSKPSHTVDAHTAEVNCLSFNPYSE 290
Query: 157 KLVSC-SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS--REGIIAS 213
+++ S D T+ +W +++ L + + D IF V WS E I+AS
Sbjct: 291 FILATGSADKTVALWDLRNLKLK----------LHSFESHKDE-IFQVQWSPHNETILAS 339
Query: 214 GAADDSVQFF-------VESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 266
D + + +S +D DGP LL H ++ W+P E ++ S
Sbjct: 340 SGTDRRLHVWDLSKIGEEQSTEDAEDGPP--ELLFIHGGHTAKISDFSWNPNEPWIICSV 397
Query: 267 SDDGMIKIWELANTL 281
S+D ++++W++A +
Sbjct: 398 SEDNIMQVWQMAENV 412
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 105/242 (43%), Gaps = 24/242 (9%)
Query: 44 EGHENEVKSVSWNASGTLLATCGRDKSVWIW-----EVMPGNEFECVSVLQGHAQDVKMV 98
EG N + + NA T D V+ + + P E + L+GH ++ +
Sbjct: 128 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGL 187
Query: 99 QWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK 157
W+P ++ L S S D+TI +W T + H V GH++ + ++++ +
Sbjct: 188 SWNPNLNGYLLSASDDHTICLWDINATPKE--HRVIDAKNIFTGHTAVVEDVAWHLLHES 245
Query: 158 LV-SCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAA 216
L S +DD + IW S + H ++ S + E I+A+G+A
Sbjct: 246 LFGSVADDQKLMIWDTR-NNNTSKPSHTVDAHTAEVN------CLSFNPYSEFILATGSA 298
Query: 217 DDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276
D +V + D + K+ L ++H ++ VQWSP +LAS+ D + +W+
Sbjct: 299 DKTVALW--------DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 350
Query: 277 LA 278
L+
Sbjct: 351 LS 352
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 2 HTRTVRSCAWSP-SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG- 59
HT V +++P S +LAT S D T +W D+ + + E H++E+ V W+
Sbjct: 276 HTAEVNCLSFNPYSEFILATGSADKTVALW-DLRNLKLKLHSFESHKDEIFQVQWSPHNE 334
Query: 60 TLLATCGRDKSVWIWEVMPGNE-----------FECVSVLQGHAQDVKMVQWHPTMD-VL 107
T+LA+ G D+ + +W++ E E + + GH + W+P ++
Sbjct: 335 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWII 394
Query: 108 FSCSYDNTIKVW 119
S S DN ++VW
Sbjct: 395 CSVSEDNIMQVW 406
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 94/233 (40%), Gaps = 21/233 (9%)
Query: 2 HTRTVRSCAWSPS-GKLLATASFDATTCIWEDVGGDYE-----CVATLEGHENEVKSVSW 55
H + +W+P+ L +AS D T C+W+ E GH V+ V+W
Sbjct: 180 HQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAW 239
Query: 56 N-ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD-VLFSCSYD 113
+ +L + D+ + IW+ N + + H +V + ++P + +L + S D
Sbjct: 240 HLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSAD 299
Query: 114 NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS-DDLTIKIWG- 171
T+ +W + ++ S H I+ + ++ + +++ S D + +W
Sbjct: 300 KTVALW--------DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351
Query: 172 ADITRMQSG-DGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSVQ 221
+ I QS D L I G H I W+ II S + D+ +Q
Sbjct: 352 SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQ 404
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 116/255 (45%), Gaps = 35/255 (13%)
Query: 43 LEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEV--MPGNE--FECVSVLQGHAQDVKM 97
L GH+ E +SWN + L + D ++ +W++ P + ++ GH V+
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 238
Query: 98 VQWHPTMDVLF-SCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD 156
V WH + LF S + D + +W DT ++N S + + H++ + LSFN +
Sbjct: 239 VAWHLLHESLFGSVADDQKLMIW---DTRNNN---TSKPSHTVDAHTAEVNCLSFNPYSE 292
Query: 157 KLVSC-SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS--REGIIAS 213
+++ S D T+ +W +++ L + + D IF V WS E I+AS
Sbjct: 293 FILATGSADKTVALWDLRNLKLK----------LHSFESHKDE-IFQVQWSPHNETILAS 341
Query: 214 GAADDSVQFF-------VESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 266
D + + +S +D DGP LL H ++ W+P E ++ S
Sbjct: 342 SGTDRRLHVWDLSKIGEEQSTEDAEDGPP--ELLFIHGGHTAKISDFSWNPNEPWIICSV 399
Query: 267 SDDGMIKIWELANTL 281
S+D ++++W++A +
Sbjct: 400 SEDNIMQVWQMAENV 414
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 105/242 (43%), Gaps = 24/242 (9%)
Query: 44 EGHENEVKSVSWNASGTLLATCGRDKSVWIW-----EVMPGNEFECVSVLQGHAQDVKMV 98
EG N + + NA T D V+ + + P E + L+GH ++ +
Sbjct: 130 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGL 189
Query: 99 QWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK 157
W+P ++ L S S D+TI +W T + H V GH++ + ++++ +
Sbjct: 190 SWNPNLNGYLLSASDDHTICLWDINATPKE--HRVIDAKNIFTGHTAVVEDVAWHLLHES 247
Query: 158 LV-SCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAA 216
L S +DD + IW S + H ++ S + E I+A+G+A
Sbjct: 248 LFGSVADDQKLMIWDTR-NNNTSKPSHTVDAHTAEVN------CLSFNPYSEFILATGSA 300
Query: 217 DDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276
D +V + D + K+ L ++H ++ VQWSP +LAS+ D + +W+
Sbjct: 301 DKTVALW--------DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 352
Query: 277 LA 278
L+
Sbjct: 353 LS 354
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 2 HTRTVRSCAWSP-SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG- 59
HT V +++P S +LAT S D T +W D+ + + E H++E+ V W+
Sbjct: 278 HTAEVNCLSFNPYSEFILATGSADKTVALW-DLRNLKLKLHSFESHKDEIFQVQWSPHNE 336
Query: 60 TLLATCGRDKSVWIWEVMPGNE-----------FECVSVLQGHAQDVKMVQWHPTMD-VL 107
T+LA+ G D+ + +W++ E E + + GH + W+P ++
Sbjct: 337 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWII 396
Query: 108 FSCSYDNTIKVW 119
S S DN ++VW
Sbjct: 397 CSVSEDNIMQVW 408
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 94/233 (40%), Gaps = 21/233 (9%)
Query: 2 HTRTVRSCAWSPS-GKLLATASFDATTCIWEDVGGDYE-----CVATLEGHENEVKSVSW 55
H + +W+P+ L +AS D T C+W+ E GH V+ V+W
Sbjct: 182 HQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAW 241
Query: 56 N-ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD-VLFSCSYD 113
+ +L + D+ + IW+ N + + H +V + ++P + +L + S D
Sbjct: 242 HLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSAD 301
Query: 114 NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS-DDLTIKIWG- 171
T+ +W + ++ S H I+ + ++ + +++ S D + +W
Sbjct: 302 KTVALW--------DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 353
Query: 172 ADITRMQSG-DGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSVQ 221
+ I QS D L I G H I W+ II S + D+ +Q
Sbjct: 354 SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQ 406
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 78/171 (45%), Gaps = 14/171 (8%)
Query: 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLA 63
+ + S A+SP GK LA+ + D I++ G + + TLEGH ++S++++ LL
Sbjct: 165 KFILSIAYSPDGKYLASGAIDGIINIFDIATG--KLLHTLEGHAMPIRSLTFSPDSQLLV 222
Query: 64 TCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAED 123
T D + I++V N L GHA V V + P D F S + W
Sbjct: 223 TASDDGYIKIYDVQHAN---LAGTLSGHASWVLNVAFCPD-DTHFVSSSSDKSVKVWDVG 278
Query: 124 TDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI 174
T + CV T + H +W + +N G K+VS DD I I+ I
Sbjct: 279 TRT----CVHTFFD----HQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCPI 321
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 109/250 (43%), Gaps = 46/250 (18%)
Query: 44 EGHENEVKSVSW------NASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKM 97
+ H++ + SV+W N+ + + VW W + L+GH V
Sbjct: 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWR---DERLDLQWSLEGHQLGVVS 85
Query: 98 VQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK 157
V T+ + S S D I++W D +N +++I + W L+F+
Sbjct: 86 VDISHTLPIAASSSLDAHIRLW-----DLENGKQIKSI----DAGPVDAWTLAFSPDSQY 136
Query: 158 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAA 216
L + + + I+G ++SG S L T + I S+ +S +G +ASGA
Sbjct: 137 LATGTHVGKVNIFG-----VESGKKEYS---LDT----RGKFILSIAYSPDGKYLASGAI 184
Query: 217 DDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276
D + F D+ G LL + H M + S+ +SP + +LL +ASDDG IKI++
Sbjct: 185 DGIINIF-----DIATGK----LLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYD 234
Query: 277 -----LANTL 281
LA TL
Sbjct: 235 VQHANLAGTL 244
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H +RS +SP +LL TAS D I++ + TL GH + V +V++ T
Sbjct: 205 HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN--LAGTLSGHASWVLNVAFCPDDTH 262
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 119
+ DKSV +W+V CV H V V+++ + S D I ++
Sbjct: 263 FVSSSSDKSVKVWDV---GTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIY 317
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 45/229 (19%), Positives = 81/229 (35%), Gaps = 53/229 (23%)
Query: 2 HTRTVRSCAWSPSGK----LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA 57
H + S AW + K + T S D +W+ + +LEGH+ V SV +
Sbjct: 31 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH 90
Query: 58 SGTLLATCGRDKSVWIWEVMPGNEFECVSV------------------------------ 87
+ + A+ D + +W++ G + + +
Sbjct: 91 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 150
Query: 88 ---------LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISES 138
L + + + + P L S + D I ++ D + T+
Sbjct: 151 VESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIF-----DIATGKLLHTL--- 202
Query: 139 NNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG-DGYASW 186
GH+ I +L+F+ LV+ SDD IKI+ + G+ASW
Sbjct: 203 -EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASW 250
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 236 YKMLLKKEKAHDMDVNSVQWSPGER---RLLASASDDGMIKIWE 276
Y +L K+E+AHD + SV W ++ + + S D ++K+W+
Sbjct: 21 YGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWK 64
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/274 (24%), Positives = 111/274 (40%), Gaps = 60/274 (21%)
Query: 50 VKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFS 109
++SV ++ G LAT D+ + IW++ + V +LQGH QD+ + + P+ D L S
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDI---ENRKIVMILQGHEQDIYSLDYFPSGDKLVS 182
Query: 110 CSYDNTIKVW-----------WAEDT--------------------------DSDNWHCV 132
S D T+++W ED DS+ V
Sbjct: 183 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 242
Query: 133 QTI---SESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHL 189
+ + +ES GH +++++ F G +VS S D ++K+W +S D
Sbjct: 243 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS-DSKTPNSGT 301
Query: 190 CTIS--GYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHD 247
C ++ G+ D + + I SG+ D V F+ D G ML + H
Sbjct: 302 CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW-----DKKSGNPLLML----QGHR 352
Query: 248 MDVNSVQWSPG-----ERRLLASASDDGMIKIWE 276
V SV + G E + A+ S D +IW+
Sbjct: 353 NSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 386
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 54/134 (40%), Gaps = 19/134 (14%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYE----------CVATLEGHENEVK 51
H +V S ++ G+ + + S D + +W + + C T GH++ V
Sbjct: 255 HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL 314
Query: 52 SVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMV------QWHPTMD 105
SV+ + + + +D+ V W+ GN +LQGH V V P +
Sbjct: 315 SVATTQNDEYILSGSKDRGVLFWDKKSGNPLL---MLQGHRNSVISVAVANGSSLGPEYN 371
Query: 106 VLFSCSYDNTIKVW 119
V + S D ++W
Sbjct: 372 VFATGSGDCKARIW 385
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 122/259 (47%), Gaps = 44/259 (16%)
Query: 24 DATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE 83
D T IW+ EC L GH V + ++ ++ T D +V +W+V G E
Sbjct: 152 DNTIKIWDK--NTLECKRILTGHTGSVLCLQYDER--VIITGSSDSTVRVWDVNTG---E 204
Query: 84 CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW-WAEDTDSDNWHCVQTISESNNGH 142
++ L H + V ++++ M + +CS D +I VW A TD T+ GH
Sbjct: 205 MLNTLIHHCEAVLHLRFNNGM--MVTCSKDRSIAVWDMASPTDI-------TLRRVLVGH 255
Query: 143 SSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFS 202
+ + + F+ K +VS S D TIK+W ++ + T++G H R I
Sbjct: 256 RAAVNVVDFDDK--YIVSASGDRTIKVWNT-----------STCEFVRTLNG-HKRGIAC 301
Query: 203 VHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRL 262
+ + R+ ++ SG++D++++ + D+ G ++L + H+ V +++ + +
Sbjct: 302 LQY-RDRLVVSGSSDNTIRLW-----DIECGACLRVL----EGHEELVRCIRF---DNKR 348
Query: 263 LASASDDGMIKIWELANTL 281
+ S + DG IK+W+L L
Sbjct: 349 IVSGAYDGKIKVWDLVAAL 367
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 118/270 (43%), Gaps = 45/270 (16%)
Query: 16 KLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWE 75
+++ T S D+T +W+ G E + TL H V + +N ++ TC +D+S+ +W+
Sbjct: 184 RVIITGSSDSTVRVWDVNTG--EMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWD 239
Query: 76 VMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTI 135
+ + VL GH V +V + + S S D TIKVW ++ V+T+
Sbjct: 240 MASPTDITLRRVLVGHRAAVNVVDFDDKY--IVSASGDRTIKVW-----NTSTCEFVRTL 292
Query: 136 SESNNGHSSTIWALSFNAKGDKL-VSCSDDLTIKIWGAD---ITRMQSGDGYASWRHLCT 191
NGH I L + D+L VS S D TI++W + R+ G
Sbjct: 293 ----NGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEG----------- 334
Query: 192 ISGYHDRTIFSVHWSREGIIASGAADDSVQF--FVESKDDLIDGPSYKMLLKKEKAHDMD 249
H+ + + + + I+ SGA D ++ V + D P+ + L+ H
Sbjct: 335 ----HEELVRCIRFDNKRIV-SGAYDGKIKVWDLVAALDP--RAPAGTLCLRTLVEHSGR 387
Query: 250 VNSVQWSPGERRLLASASDDGMIKIWELAN 279
V +Q+ + + S+S D I IW+ N
Sbjct: 388 VFRLQFDEFQ---IVSSSHDDTILIWDFLN 414
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 14/172 (8%)
Query: 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS-- 58
MHT + +C+++ S + TAS D T +W+ G + + + GH +V + S
Sbjct: 152 MHTNYLSACSFTNSDMQILTASGDGTCALWDVESG--QLLQSFHGHGADVLCLDLAPSET 209
Query: 59 GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKV 118
G + G DK +W++ G +CV + H DV V+++P+ D S S D T ++
Sbjct: 210 GNTFVSGGCDKKAMVWDMRSG---QCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRL 266
Query: 119 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 170
+ D +D + + G SS ++LS G L + +D TI +W
Sbjct: 267 Y---DLRADREVAIYSKESIIFGASSVDFSLS----GRLLFAGYNDYTINVW 311
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 5/119 (4%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYE-CVATLEGHENEVKSVSWNASGT 60
H V S + PSG A+ S DAT C D+ D E + + E SV ++ SG
Sbjct: 239 HESDVNSVRYYPSGDAFASGSDDAT-CRLYDLRADREVAIYSKESIIFGASSVDFSLSGR 297
Query: 61 LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 119
LL D ++ +W+V+ G+ VS+L GH V ++ P S S+D+T++VW
Sbjct: 298 LLFAGYNDYTINVWDVLKGSR---VSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 24/174 (13%)
Query: 6 VRSCAWSPSGKLLATASFDATTCIW-------EDVGGDYECVATLEGHENEVKSVSWNAS 58
V +CA++PSG +A D ++ E++ + VA H N + + S+ S
Sbjct: 109 VMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAM---HTNYLSACSFTNS 165
Query: 59 GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP--TMDVLFSCSYDNTI 116
+ T D + +W+V G + + GH DV + P T + S D
Sbjct: 166 DMQILTASGDGTCALWDVESG---QLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKA 222
Query: 117 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 170
VW D + CVQ H S + ++ + GD S SDD T +++
Sbjct: 223 MVW-----DMRSGQCVQAFET----HESDVNSVRYYPSGDAFASGSDDATCRLY 267
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 95/238 (39%), Gaps = 29/238 (12%)
Query: 42 TLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWH 101
TL+GH N+V + W + + +D V +W+ N+ V++ V +
Sbjct: 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTM---PCTWVMACAYA 115
Query: 102 PTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161
P+ + DN V+ ++N + +S H++ + A SF ++++
Sbjct: 116 PSGCAIACGGLDNKCSVYPLTFDKNEN---MAAKKKSVAMHTNYLSACSFTNSDMQILTA 172
Query: 162 SDDLTIKIWGADITR-MQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDS 219
S D T +W + + +QS G+ + D + S G SG D
Sbjct: 173 SGDGTCALWDVESGQLLQSFHGHGA-----------DVLCLDLAPSETGNTFVSGGCDKK 221
Query: 220 VQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
+ D+ G + + H+ DVNSV++ P AS SDD ++++L
Sbjct: 222 AMVW-----DMRSGQCVQAF----ETHESDVNSVRYYP-SGDAFASGSDDATCRLYDL 269
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 15/180 (8%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS-GT 60
H +RS A P+ + + S D T +W + ++ T EGHE+ V V++N +
Sbjct: 96 HPDYIRSIAVHPTKPYVLSGSDDLTVKLW-NWENNWALEQTFEGHEHFVMCVAFNPKDPS 154
Query: 61 LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD--VLFSCSYDNTIKV 118
A+ D++V +W + G ++ G + V V ++P D + + S D TIK+
Sbjct: 155 TFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 119 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ 178
W D CV T+ GH S + F+ ++S S+D T+KIW + +++
Sbjct: 213 W-----DYQTKSCVATLE----GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE 263
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 79/189 (41%), Gaps = 28/189 (14%)
Query: 38 ECVATLEGHENEVKSVSWNASGTLLATCGRDKSV--WIWEVMPGNEFECVSVLQGHAQDV 95
E V E H + ++S++ + + + + D +V W WE N + +GH V
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE----NNWALEQTFEGHEHFV 143
Query: 96 KMVQWHPTMDVLFSCS-YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK 154
V ++P F+ D T+KVW + + N+ G + + +
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVW-SLGQSTPNFTLT-------TGQERGVNYVDYYPL 195
Query: 155 GDK--LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIA 212
DK +++ SDDLTIKIW Y + + T+ G+ F+V II
Sbjct: 196 PDKPYMITASDDLTIKIW-----------DYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244
Query: 213 SGAADDSVQ 221
SG+ D +++
Sbjct: 245 SGSEDGTLK 253
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 69/169 (40%), Gaps = 20/169 (11%)
Query: 6 VRSCAWSPSGKLLATASFDATTCIWEDVGGDYEC---VATLEGHENEVKSVSWNASGTLL 62
V+ + P+ + T + +W +YE V +++ E V++ + A +
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVELW-----NYETQVEVRSIQVTETPVRAGKFIARKNWI 70
Query: 63 ATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAE 122
D + ++ G E V + H ++ + HPT + S S D T+K+W E
Sbjct: 71 IVGSDDFRIRVFNYNTG---EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127
Query: 123 DTDSDNWHCVQTISESNNGHSSTIWALSFNAK-GDKLVSCSDDLTIKIW 170
+NW QT GH + ++FN K S D T+K+W
Sbjct: 128 ----NNWALEQTFE----GHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 22/139 (15%)
Query: 141 GHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTI 200
H I +++ + ++S SDDLT+K+W + +W T G H+ +
Sbjct: 95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE----------NNWALEQTFEG-HEHFV 143
Query: 201 FSVHWSRE--GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP- 257
V ++ + ASG D +V+ + + P++ + +E+ VN V + P
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQST----PNFTLTTGQERG----VNYVDYYPL 195
Query: 258 GERRLLASASDDGMIKIWE 276
++ + +ASDD IKIW+
Sbjct: 196 PDKPYMITASDDLTIKIWD 214
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 15/180 (8%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS-GT 60
H +RS A P+ + + S D T +W + ++ T EGHE+ V V++N +
Sbjct: 96 HPDYIRSIAVHPTKPYVLSGSDDLTVKLW-NWENNWALEQTFEGHEHFVMCVAFNPKDPS 154
Query: 61 LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD--VLFSCSYDNTIKV 118
A+ D++V +W + G ++ G + V V ++P D + + S D TIK+
Sbjct: 155 TFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 119 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ 178
W D CV T+ GH S + F+ ++S S+D T+KIW + +++
Sbjct: 213 W-----DYQTKSCVATLE----GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE 263
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 79/189 (41%), Gaps = 28/189 (14%)
Query: 38 ECVATLEGHENEVKSVSWNASGTLLATCGRDKSV--WIWEVMPGNEFECVSVLQGHAQDV 95
E V E H + ++S++ + + + + D +V W WE N + +GH V
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE----NNWALEQTFEGHEHFV 143
Query: 96 KMVQWHPTMDVLFSCS-YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK 154
V ++P F+ D T+KVW + + N+ G + + +
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVW-SLGQSTPNFTLT-------TGQERGVNYVDYYPL 195
Query: 155 GDK--LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIA 212
DK +++ SDDLTIKIW Y + + T+ G+ F+V II
Sbjct: 196 PDKPYMITASDDLTIKIW-----------DYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244
Query: 213 SGAADDSVQ 221
SG+ D +++
Sbjct: 245 SGSEDGTLK 253
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 69/169 (40%), Gaps = 20/169 (11%)
Query: 6 VRSCAWSPSGKLLATASFDATTCIWEDVGGDYEC---VATLEGHENEVKSVSWNASGTLL 62
V+ + P+ + T + +W +YE V +++ E V++ + A +
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVELW-----NYETQVEVRSIQVTETPVRAGKFIARKNWI 70
Query: 63 ATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAE 122
D + ++ G E V + H ++ + HPT + S S D T+K+W E
Sbjct: 71 IVGSDDFRIRVFNYNTG---EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127
Query: 123 DTDSDNWHCVQTISESNNGHSSTIWALSFNAK-GDKLVSCSDDLTIKIW 170
+NW QT GH + ++FN K S D T+K+W
Sbjct: 128 ----NNWALEQTFE----GHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 22/139 (15%)
Query: 141 GHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTI 200
H I +++ + ++S SDDLT+K+W + +W T G H+ +
Sbjct: 95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE----------NNWALEQTFEG-HEHFV 143
Query: 201 FSVHWSRE--GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP- 257
V ++ + ASG D +V+ + + P++ + +E+ VN V + P
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQST----PNFTLTTGQERG----VNYVDYYPL 195
Query: 258 GERRLLASASDDGMIKIWE 276
++ + +ASDD IKIW+
Sbjct: 196 PDKPYMITASDDLTIKIWD 214
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 39/195 (20%), Positives = 79/195 (40%), Gaps = 32/195 (16%)
Query: 88 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 147
+ VK + +HPT + + Y +++W E Q S + +
Sbjct: 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYE---------TQVEVRSIQVTETPVR 59
Query: 148 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHD--RTIFSVHW 205
A F A+ + ++ SDD I+++ Y + + + D R+I +VH
Sbjct: 60 AGKFIARKNWIIVGSDDFRIRVFN-----------YNTGEKVVDFEAHPDYIRSI-AVHP 107
Query: 206 SREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLAS 265
++ ++ SG+ D +V+ L + + L + + H+ V V ++P + AS
Sbjct: 108 TKPYVL-SGSDDLTVK--------LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS 158
Query: 266 ASDDGMIKIWELANT 280
D +K+W L +
Sbjct: 159 GCLDRTVKVWSLGQS 173
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 15/180 (8%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS-GT 60
H +RS A P+ + + S D T +W + ++ T EGHE+ V V++N +
Sbjct: 96 HPDYIRSIAVHPTKPYVLSGSDDLTVKLW-NWENNWALEQTFEGHEHFVMCVAFNPKDPS 154
Query: 61 LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD--VLFSCSYDNTIKV 118
A+ D++V +W + G ++ G + V V ++P D + + S D TIK+
Sbjct: 155 TFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 119 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ 178
W D CV T+ GH S + F+ ++S S+D T+KIW + +++
Sbjct: 213 W-----DYQTKSCVATLE----GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE 263
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 79/189 (41%), Gaps = 28/189 (14%)
Query: 38 ECVATLEGHENEVKSVSWNASGTLLATCGRDKSV--WIWEVMPGNEFECVSVLQGHAQDV 95
E V E H + ++S++ + + + + D +V W WE N + +GH V
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE----NNWALEQTFEGHEHFV 143
Query: 96 KMVQWHPTMDVLFSCS-YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK 154
V ++P F+ D T+KVW + + N+ G + + +
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVW-SLGQSTPNFTLT-------TGQERGVNYVDYYPL 195
Query: 155 GDK--LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIA 212
DK +++ SDDLTIKIW Y + + T+ G+ F+V II
Sbjct: 196 PDKPYMITASDDLTIKIW-----------DYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244
Query: 213 SGAADDSVQ 221
SG+ D +++
Sbjct: 245 SGSEDGTLK 253
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 69/169 (40%), Gaps = 20/169 (11%)
Query: 6 VRSCAWSPSGKLLATASFDATTCIWEDVGGDYEC---VATLEGHENEVKSVSWNASGTLL 62
V+ + P+ + T + +W +YE V +++ E V++ + A +
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVELW-----NYETQVEVRSIQVTETPVRAGKFIARKNWI 70
Query: 63 ATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAE 122
D + ++ G E V + H ++ + HPT + S S D T+K+W E
Sbjct: 71 IVGSDDFRIRVFNYNTG---EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127
Query: 123 DTDSDNWHCVQTISESNNGHSSTIWALSFNAK-GDKLVSCSDDLTIKIW 170
+NW QT GH + ++FN K S D T+K+W
Sbjct: 128 ----NNWALEQTFE----GHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 22/139 (15%)
Query: 141 GHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTI 200
H I +++ + ++S SDDLT+K+W + +W T G H+ +
Sbjct: 95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE----------NNWALEQTFEG-HEHFV 143
Query: 201 FSVHWSRE--GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP- 257
V ++ + ASG D +V+ + + P++ + +E+ VN V + P
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQST----PNFTLTTGQERG----VNYVDYYPL 195
Query: 258 GERRLLASASDDGMIKIWE 276
++ + +ASDD IKIW+
Sbjct: 196 PDKPYMITASDDLTIKIWD 214
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 39/195 (20%), Positives = 79/195 (40%), Gaps = 32/195 (16%)
Query: 88 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 147
+ VK + +HPT + + Y +++W E Q S + +
Sbjct: 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYE---------TQVEVRSIQVTETPVR 59
Query: 148 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHD--RTIFSVHW 205
A F A+ + ++ SDD I+++ Y + + + D R+I +VH
Sbjct: 60 AGKFIARKNWIIVGSDDFRIRVFN-----------YNTGEKVVDFEAHPDYIRSI-AVHP 107
Query: 206 SREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLAS 265
++ ++ SG+ D +V+ L + + L + + H+ V V ++P + AS
Sbjct: 108 TKPYVL-SGSDDLTVK--------LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS 158
Query: 266 ASDDGMIKIWELANT 280
D +K+W L +
Sbjct: 159 GCLDRTVKVWSLGQS 173
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 15/180 (8%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS-GT 60
H +RS A P+ + + S D T +W + ++ T EGHE+ V V++N +
Sbjct: 96 HPDYIRSIAVHPTKPYVLSGSDDLTVKLW-NWENNWALEQTFEGHEHFVMCVAFNPKDPS 154
Query: 61 LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD--VLFSCSYDNTIKV 118
A+ D++V +W + G ++ G + V V ++P D + + S D TIK+
Sbjct: 155 TFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 119 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ 178
W D CV T+ GH S + F+ ++S S+D T+KIW + +++
Sbjct: 213 W-----DYQTKSCVATLE----GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE 263
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 79/189 (41%), Gaps = 28/189 (14%)
Query: 38 ECVATLEGHENEVKSVSWNASGTLLATCGRDKSV--WIWEVMPGNEFECVSVLQGHAQDV 95
E V E H + ++S++ + + + + D +V W WE N + +GH V
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE----NNWALEQTFEGHEHFV 143
Query: 96 KMVQWHPTMDVLFSCS-YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK 154
V ++P F+ D T+KVW + + N+ G + + +
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVW-SLGQSTPNFTLT-------TGQERGVNYVDYYPL 195
Query: 155 GDK--LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIA 212
DK +++ SDDLTIKIW Y + + T+ G+ F+V II
Sbjct: 196 PDKPYMITASDDLTIKIW-----------DYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244
Query: 213 SGAADDSVQ 221
SG+ D +++
Sbjct: 245 SGSEDGTLK 253
Score = 34.3 bits (77), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 22/139 (15%)
Query: 141 GHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTI 200
H I +++ + ++S SDDLT+K+W + +W T G H+ +
Sbjct: 95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE----------NNWALEQTFEG-HEHFV 143
Query: 201 FSVHWSRE--GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP- 257
V ++ + ASG D +V+ + + P++ + +E+ VN V + P
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQST----PNFTLTTGQERG----VNYVDYYPL 195
Query: 258 GERRLLASASDDGMIKIWE 276
++ + +ASDD IKIW+
Sbjct: 196 PDKPYMITASDDLTIKIWD 214
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 80/173 (46%), Gaps = 16/173 (9%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HT V +S G+ +A+ D T +++ G E + ++ HE+EV +++
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETG--EKLLEIKAHEDEVLCCAFSTDDRF 677
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD--VLFSCSYDNTIKVW 119
+ATC DK V IW M G E V H++ V + + +L + S D +K+W
Sbjct: 678 IATCSVDKKVKIWNSMTG---ELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLW 734
Query: 120 WAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA 172
D + C T+ GH++++ F+ L SCS D T+K+W A
Sbjct: 735 -----DLNQKECRNTMF----GHTNSVNHCRFSPDDKLLASCSADGTLKLWDA 778
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 83/195 (42%), Gaps = 14/195 (7%)
Query: 2 HTRTVRSCAWSPSGK--LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG 59
H+ V C ++ S LLAT S D +W+ EC T+ GH N V ++
Sbjct: 704 HSEQVNCCHFTNSSHHLLLATGSSDCFLKLWD--LNQKECRNTMFGHTNSVNHCRFSPDD 761
Query: 60 TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSC---SYDNT- 115
LLA+C D ++ +W+ NE + ++V Q + + M+V+ C S D
Sbjct: 762 KLLASCSADGTLKLWDATSANERKSINVKQFF---LNLEDPQEDMEVIVKCCSWSADGAR 818
Query: 116 IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADIT 175
I V + H + E + GH STI F+ + V +++W D +
Sbjct: 819 IMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTD-S 877
Query: 176 RMQSGD--GYASWRH 188
R + D G+ SW H
Sbjct: 878 RSKVADCRGHLSWVH 892
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 78/180 (43%), Gaps = 23/180 (12%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGD-------YECVATLEGHENE----V 50
HT +V C +SP KLLA+ S D T +W+ + + LE + + V
Sbjct: 748 HTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIV 807
Query: 51 KSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSC 110
K SW+A G + ++K ++++++ + GH ++ + P +
Sbjct: 808 KCCSWSADGARIMVAAKNK-IFLFDIHTSGLLG--EIHTGHHSTIQYCDFSPQNHLAVVA 864
Query: 111 SYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 170
+++W +TDS ++ GH S + + F+ G ++ SDD TI++W
Sbjct: 865 LSQYCVELW---NTDS------RSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLW 915
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/328 (20%), Positives = 126/328 (38%), Gaps = 58/328 (17%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H T++ C +SP L A +W VA GH + V V ++ G+
Sbjct: 845 HHSTIQYCDFSPQNHLAVVALSQYCVELWN--TDSRSKVADCRGHLSWVHGVMFSPDGSS 902
Query: 62 LATCGRDKSVWIWE------------------VMPGNEFECVSVLQGHAQDVKMV----- 98
T D+++ +WE V NE ++V H + ++++
Sbjct: 903 FLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAV--DHIRRLQLINGRTG 960
Query: 99 QWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTIS----ESNNGHSSTIWALSFNAK 154
Q + SC + + A ++ ++ ++ +S H T+W + F A
Sbjct: 961 QIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTAD 1020
Query: 155 GDKLVSCSDDLTIKIWGADI---------------TRMQSGDGYASWRHLCT------IS 193
L+S SDD I++W + R+ SW T I+
Sbjct: 1021 EKTLISSSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIIT 1080
Query: 194 GYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLK--KEKAHDMDVN 251
G ++ F H + +++ + D+ +F S D S+ +LL + + H+ V
Sbjct: 1081 GNKEKD-FVCH--QGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVR 1137
Query: 252 SVQWSPGERRLLASASDDGMIKIWELAN 279
+S + LLA+ D+G I+IW ++N
Sbjct: 1138 CSAFSV-DSTLLATGDDNGEIRIWNVSN 1164
Score = 33.9 bits (76), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 34/171 (19%)
Query: 109 SCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIK 168
SC D T++V+ AE + + I H + +F+ + +CS D +K
Sbjct: 638 SCGADKTLQVFKAETGEK-----LLEI----KAHEDEVLCCAFSTDDRFIATCSVDKKVK 688
Query: 169 IWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHW---SREGIIASGAADDSVQFFVE 225
IW + +G+ ++ H + H+ S ++A+G++D ++ +
Sbjct: 689 IWNS-----MTGELVHTYDE-------HSEQVNCCHFTNSSHHLLLATGSSDCFLKLW-- 734
Query: 226 SKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276
DL + H VN ++SP ++ LLAS S DG +K+W+
Sbjct: 735 ---DLNQKECRNTMF----GHTNSVNHCRFSPDDK-LLASCSADGTLKLWD 777
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 57/137 (41%), Gaps = 21/137 (15%)
Query: 142 HSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIF 201
H+ ++ F+ G ++ SC D T++++ A+ + L I + D +
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAE-----------TGEKLLEIKAHEDEVLC 668
Query: 202 SVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERR 261
+ + IA+ + D V+ + +L+ +Y H VN ++
Sbjct: 669 CAFSTDDRFIATCSVDKKVKIWNSMTGELVH--TYD-------EHSEQVNCCHFTNSSHH 719
Query: 262 LL-ASASDDGMIKIWEL 277
LL A+ S D +K+W+L
Sbjct: 720 LLLATGSSDCFLKLWDL 736
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 68/163 (41%), Gaps = 15/163 (9%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H TV+ + +LL + SFD T +W + G+ E H+ V S + T
Sbjct: 1049 HQETVKDFRLLKNSRLL-SWSFDGTVKVWNIITGNKE--KDFVCHQGTVLSCDISHDATK 1105
Query: 62 LATCGRDKSVWIWE---VMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKV 118
++ DK+ IW ++P +E L+GH V+ + +L + + I++
Sbjct: 1106 FSSTSADKTAKIWSFDLLLPLHE------LRGHNGCVRCSAFSVDSTLLATGDDNGEIRI 1159
Query: 119 WWAEDTDSDNWHCVQTISESNNG-HSSTIWALSFNAKGDKLVS 160
W ++ + H +SE H + L F+ G L+S
Sbjct: 1160 WNV--SNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLIS 1200
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 81/176 (46%), Gaps = 20/176 (11%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGD--YECVATLEGHENEVKSVSWNA-S 58
H++ V W+P G+ LA+ D +W G+ + + T H+ VK+V+W
Sbjct: 240 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 299
Query: 59 GTLLATCG--RDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS--YDN 114
+LAT G D+ + IW V G C+S + H+Q V + W P L S N
Sbjct: 300 SNVLATGGGTSDRHIRIWNVCSG---ACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQN 355
Query: 115 TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 170
+ +W + + ++E GH+S + +L+ + G + S + D T+++W
Sbjct: 356 QLVIW--------KYPTMAKVAEL-KGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 7/142 (4%)
Query: 6 VRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATC 65
+ S AW G LA + A +W DV + + + H V S+SWN+ +L++
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLW-DV-QQQKRLRNMTSHSARVGSLSWNS--YILSSG 216
Query: 66 GRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTD 125
R + +V V+ L GH+Q+V ++W P L S DN + VW + +
Sbjct: 217 SRSGHIHHHDVRVAEHH--VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 274
Query: 126 SDNWHCVQTISESNNGHSSTIW 147
W +QT ++ + W
Sbjct: 275 G-GWVPLQTFTQHQGAVKAVAW 295
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 80/208 (38%), Gaps = 30/208 (14%)
Query: 14 SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWI 73
SG +LA A D + +W GD + +E + SV+W G LA V +
Sbjct: 126 SGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQL 184
Query: 74 WEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIK---VWWAEDTDSDNWH 130
W+V ++ H+ V + W+ +L S S I V AE H
Sbjct: 185 WDVQQQKRLRNMT---SHSARVGSLSWNSY--ILSSGSRSGHIHHHDVRVAE-------H 232
Query: 131 CVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLC 190
V T+S GHS + L + G L S +D + +W S G W L
Sbjct: 233 HVATLS----GHSQEVCGLRWAPDGRHLASGGNDNLVNVW-------PSAPGEGGWVPLQ 281
Query: 191 TISGYHDRTIFSVHWS--REGIIASGAA 216
T + H + +V W + ++A+G
Sbjct: 282 TFT-QHQGAVKAVAWCPWQSNVLATGGG 308
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 81/176 (46%), Gaps = 20/176 (11%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGD--YECVATLEGHENEVKSVSWNA-S 58
H++ V W+P G+ LA+ D +W G+ + + T H+ VK+V+W
Sbjct: 229 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 288
Query: 59 GTLLATCG--RDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS--YDN 114
+LAT G D+ + IW V G C+S + H+Q V + W P L S N
Sbjct: 289 SNVLATGGGTSDRHIRIWNVCSG---ACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQN 344
Query: 115 TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 170
+ +W + + ++E GH+S + +L+ + G + S + D T+++W
Sbjct: 345 QLVIW--------KYPTMAKVAEL-KGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 7/142 (4%)
Query: 6 VRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATC 65
+ S AW G LA + A +W DV + + + H V S+SWN+ +L++
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLW-DV-QQQKRLRNMTSHSARVGSLSWNS--YILSSG 205
Query: 66 GRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTD 125
R + +V V+ L GH+Q+V ++W P L S DN + VW + +
Sbjct: 206 SRSGHIHHHDVRVAEHH--VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 263
Query: 126 SDNWHCVQTISESNNGHSSTIW 147
W +QT ++ + W
Sbjct: 264 G-GWVPLQTFTQHQGAVKAVAW 284
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 80/208 (38%), Gaps = 30/208 (14%)
Query: 14 SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWI 73
SG +LA A D + +W GD + +E + SV+W G LA V +
Sbjct: 115 SGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQL 173
Query: 74 WEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIK---VWWAEDTDSDNWH 130
W+V ++ H+ V + W+ +L S S I V AE H
Sbjct: 174 WDVQQQKRLRNMT---SHSARVGSLSWNSY--ILSSGSRSGHIHHHDVRVAE-------H 221
Query: 131 CVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLC 190
V T+S GHS + L + G L S +D + +W S G W L
Sbjct: 222 HVATLS----GHSQEVCGLRWAPDGRHLASGGNDNLVNVW-------PSAPGEGGWVPLQ 270
Query: 191 TISGYHDRTIFSVHWS--REGIIASGAA 216
T + H + +V W + ++A+G
Sbjct: 271 TFT-QHQGAVKAVAWCPWQSNVLATGGG 297
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 35/178 (19%)
Query: 15 GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL--LATCGRDKSVW 72
G +L + S D T +W+ G C EGH + V+ + + + T RD ++
Sbjct: 173 GGILVSGSTDRTVRVWDIKKG--CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 230
Query: 73 IWEV--------------------MPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY 112
+W++ P V VL+GH V+ V H +++ S SY
Sbjct: 231 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHG--NIVVSGSY 288
Query: 113 DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 170
DNT+ VW D C+ +S GH+ I++ ++ + + +S S D TI+IW
Sbjct: 289 DNTLIVW-----DVAQXKCLYILS----GHTDRIYSTIYDHERKRCISASXDTTIRIW 337
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 16/134 (11%)
Query: 40 VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ 99
V L GH V++VS G ++ + D ++ +W+V + +C+ +L GH +
Sbjct: 263 VGVLRGHXASVRTVS--GHGNIVVSGSYDNTLIVWDVA---QXKCLYILSGHTDRIYSTI 317
Query: 100 WHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV 159
+ S S D TI++W D +N T+ GH++ + L + K LV
Sbjct: 318 YDHERKRCISASXDTTIRIW-----DLENGELXYTLQ----GHTALVGLLRLSDKF--LV 366
Query: 160 SCSDDLTIKIWGAD 173
S + D +I+ W A+
Sbjct: 367 SAAADGSIRGWDAN 380
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 9/122 (7%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H +VR+ S G ++ + S+D T +W DV +C+ L GH + + S ++
Sbjct: 269 HXASVRTV--SGHGNIVVSGSYDNTLIVW-DVA-QXKCLYILSGHTDRIYSTIYDHERKR 324
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
+ D ++ IW++ G E LQGH V +++ L S + D +I+ W A
Sbjct: 325 CISASXDTTIRIWDLENG---ELXYTLQGHTALVGLLRLSDKF--LVSAAADGSIRGWDA 379
Query: 122 ED 123
D
Sbjct: 380 ND 381
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 141 GHSSTIWALSFNAKGDKLVSCSDDLTIKIW 170
GH +WAL + A G LVS S D T+++W
Sbjct: 160 GHDGGVWALKY-AHGGILVSGSTDRTVRVW 188
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 81/176 (46%), Gaps = 20/176 (11%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGD--YECVATLEGHENEVKSVSWNA-S 58
H++ V W+P G+ LA+ D +W G+ + + T H+ VK+V+W
Sbjct: 149 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 208
Query: 59 GTLLATCG--RDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS--YDN 114
+LAT G D+ + IW V G C+S + H+Q V + W P L S N
Sbjct: 209 SNVLATGGGTSDRHIRIWNVCSG---ACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQN 264
Query: 115 TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 170
+ +W + + ++E GH+S + +L+ + G + S + D T+++W
Sbjct: 265 QLVIW--------KYPTMAKVAEL-KGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 7/142 (4%)
Query: 6 VRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATC 65
+ S AW G LA + A +W DV + + + H V S+SWN+ +L++
Sbjct: 70 ISSVAWIKEGNYLAVGTSSAEVQLW-DV-QQQKRLRNMTSHSARVGSLSWNS--YILSSG 125
Query: 66 GRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTD 125
R + +V V+ L GH+Q+V ++W P L S DN + VW + +
Sbjct: 126 SRSGHIHHHDVRVAEHH--VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 183
Query: 126 SDNWHCVQTISESNNGHSSTIW 147
W +QT ++ + W
Sbjct: 184 G-GWVPLQTFTQHQGAVKAVAW 204
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 40 VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN----EFECVSVLQGHAQDV 95
VATL GH EV + W G LA+ G D V +W PG + + QG + V
Sbjct: 143 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 202
Query: 96 KMVQWHPTMDVLFSCSYDNTIKVW 119
W + + D I++W
Sbjct: 203 AWCPWQSNVLATGGGTSDRHIRIW 226
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 101/258 (39%), Gaps = 42/258 (16%)
Query: 14 SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWI 73
SG +LA A D + +W GD + +E + SV+W G LA V +
Sbjct: 35 SGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQL 93
Query: 74 WEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIK---VWWAEDTDSDNWH 130
W+V ++ H+ V + W+ +L S S I V AE H
Sbjct: 94 WDVQQQKRLRNMT---SHSARVGSLSWNSY--ILSSGSRSGHIHHHDVRVAE-------H 141
Query: 131 CVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLC 190
V T+S GHS + L + G L S +D + +W S G W L
Sbjct: 142 HVATLS----GHSQEVCGLRWAPDGRHLASGGNDNLVNVW-------PSAPGEGGWVPLQ 190
Query: 191 TISGYHDRTIFSVHWS--REGIIASGA--ADDSVQFFVESKDDLIDGPSYKMLLKKEKAH 246
T + H + +V W + ++A+G +D ++ + ++ G L AH
Sbjct: 191 TFT-QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW-----NVCSG----ACLSAVDAH 240
Query: 247 DMDVNSVQWSPGERRLLA 264
V S+ WSP + L++
Sbjct: 241 S-QVCSILWSPHYKELIS 257
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 35/178 (19%)
Query: 15 GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL--LATCGRDKSVW 72
G +L + S D T +W+ G C EGH + V+ + + + T RD ++
Sbjct: 173 GGILVSGSTDRTVRVWDIKKG--CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 230
Query: 73 IWEV--------------------MPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY 112
+W++ P V VL+GH V+ V H +++ S SY
Sbjct: 231 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHG--NIVVSGSY 288
Query: 113 DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 170
DNT+ VW D C+ +S GH+ I++ ++ + + +S S D TI+IW
Sbjct: 289 DNTLIVW-----DVAQMKCLYILS----GHTDRIYSTIYDHERKRCISASMDTTIRIW 337
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 16/134 (11%)
Query: 40 VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ 99
V L GH V++VS G ++ + D ++ +W+V + +C+ +L GH +
Sbjct: 263 VGVLRGHMASVRTVS--GHGNIVVSGSYDNTLIVWDVA---QMKCLYILSGHTDRIYSTI 317
Query: 100 WHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV 159
+ S S D TI++W D +N + T+ GH++ + L + K LV
Sbjct: 318 YDHERKRCISASMDTTIRIW-----DLENGELMYTLQ----GHTALVGLLRLSDKF--LV 366
Query: 160 SCSDDLTIKIWGAD 173
S + D +I+ W A+
Sbjct: 367 SAAADGSIRGWDAN 380
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 9/122 (7%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H +VR+ S G ++ + S+D T +W DV +C+ L GH + + S ++
Sbjct: 269 HMASVRTV--SGHGNIVVSGSYDNTLIVW-DVA-QMKCLYILSGHTDRIYSTIYDHERKR 324
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
+ D ++ IW++ G E + LQGH V +++ L S + D +I+ W A
Sbjct: 325 CISASMDTTIRIWDLENG---ELMYTLQGHTALVGLLRLSDKF--LVSAAADGSIRGWDA 379
Query: 122 ED 123
D
Sbjct: 380 ND 381
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 10/58 (17%)
Query: 113 DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 170
D I+V+ DS N + +S GH +WAL + A G LVS S D T+++W
Sbjct: 141 DKMIRVY-----DSINKKFLLQLS----GHDGGVWALKY-AHGGILVSGSTDRTVRVW 188
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 36/244 (14%)
Query: 42 TLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECVSV--LQGHAQDVKMV 98
TLEGH V S++ +A LL + RDK++ W++ ++ V V +GH+ V+
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 99 QWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158
S S+D T+++W D Q GH S + ++ + K +
Sbjct: 72 TLTADGAYALSASWDKTLRLW-----DVATGETYQRFV----GHKSDVMSVDIDKKASMI 122
Query: 159 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASG--AA 216
+S S D TIK+W + L T+ G++D W + + A
Sbjct: 123 ISGSRDKTIKVW------------TIKGQCLATLLGHND-------WVSQVRVVPNEKAD 163
Query: 217 DDSVQFFVESKDDLIDGPSYKMLLKKEK--AHDMDVNSVQWSPGERRLLASASDDGMIKI 274
DDSV D ++ + + H+ ++N++ SP + L+ASA DG I +
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIML 222
Query: 275 WELA 278
W LA
Sbjct: 223 WNLA 226
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 72/307 (23%), Positives = 120/307 (39%), Gaps = 69/307 (22%)
Query: 17 LLATASFDATTCIWEDVGGDYEC---VATLEGHENEVKSVSWNASGTLLATCGRDKSVWI 73
LL +AS D T W+ G D + V + +GH + V+ + A G + DK++ +
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 74 WEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW-------------- 119
W+V G ++ GH DV V ++ S S D TIKVW
Sbjct: 92 WDVATGETYQR---FVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHN 148
Query: 120 -WA--------EDTDSDNWHCVQTISESNN------------------GHSSTIWALSFN 152
W E D D+ V IS N+ GH+S I L+ +
Sbjct: 149 DWVSQVRVVPNEKADDDS---VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTAS 205
Query: 153 AKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIA 212
G + S D I +W A+ + + T+S + +FS+ +S
Sbjct: 206 PDGTLIASAGKDGEIMLW-----------NLAAKKAMYTLSAQDE--VFSLAFSPNRYWL 252
Query: 213 SGAADDSVQFFVESKDDLIDG--PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDG 270
+ A ++ F L+D P + K + H + S+ WS + L A +D+
Sbjct: 253 AAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAV---SLAWSADGQTLFAGYTDN- 308
Query: 271 MIKIWEL 277
+I++W++
Sbjct: 309 VIRVWQV 315
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 80/184 (43%), Gaps = 18/184 (9%)
Query: 1 MHTRTVRSCAWSPSGK-LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG 59
+H +V + W P + ++SFD T +W+ + A + E V S +
Sbjct: 97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDT---NTLQTADVFNFEETVYSHHMSPVS 153
Query: 60 T---LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNT 115
T L+A R V + ++ G+ C +LQGH Q++ V W P D +L + S D+
Sbjct: 154 TKHCLVAVGTRGPKVQLCDLKSGS---CSHILQGHRQEILAVSWSPRYDYILATASADSR 210
Query: 116 IKVWWAEDT-------DSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIK 168
+K+W D N Q + +N H+ + L F + G L++ D ++
Sbjct: 211 VKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMR 270
Query: 169 IWGA 172
+W +
Sbjct: 271 LWNS 274
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 26/124 (20%)
Query: 158 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS----REGIIAS 213
S S D T+K+W D +Q+ D + + T++S H S + ++A
Sbjct: 115 FTSSSFDKTLKVW--DTNTLQTADVFN-----------FEETVYSHHMSPVSTKHCLVAV 161
Query: 214 GAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIK 273
G VQ DL G +L + H ++ +V WSP +LA+AS D +K
Sbjct: 162 GTRGPKVQLC-----DLKSGSCSHIL----QGHRQEILAVSWSPRYDYILATASADSRVK 212
Query: 274 IWEL 277
+W++
Sbjct: 213 LWDV 216
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 245 AHDMDVNSVQWSPGERRLLASASDDGMIKIWELANTL 281
H V +VQW P + + S+S D +K+W+ NTL
Sbjct: 97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWD-TNTL 132
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 36/244 (14%)
Query: 42 TLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECVSV--LQGHAQDVKMV 98
TLEGH V S++ +A LL + RDK++ W++ ++ V V +GH+ V+
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 99 QWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158
S S+D T+++W D Q GH S + ++ + K +
Sbjct: 72 TLTADGAYALSASWDKTLRLW-----DVATGETYQRFV----GHKSDVMSVDIDKKASMI 122
Query: 159 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASG--AA 216
+S S D TIK+W + L T+ G++D W + + A
Sbjct: 123 ISGSRDKTIKVW------------TIKGQCLATLLGHND-------WVSQVRVVPNEKAD 163
Query: 217 DDSVQFFVESKDDLIDGPSYKMLLKKEK--AHDMDVNSVQWSPGERRLLASASDDGMIKI 274
DDSV D ++ + + H+ ++N++ SP + L+ASA DG I +
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIML 222
Query: 275 WELA 278
W LA
Sbjct: 223 WNLA 226
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/307 (23%), Positives = 119/307 (38%), Gaps = 69/307 (22%)
Query: 17 LLATASFDATTCIWEDVGGDYEC---VATLEGHENEVKSVSWNASGTLLATCGRDKSVWI 73
LL +AS D T W+ G D + V + +GH + V+ + A G + DK++ +
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 74 WEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW-------------- 119
W+V G ++ GH DV V ++ S S D TIKVW
Sbjct: 92 WDVATGETYQR---FVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHN 148
Query: 120 -WA--------EDTDSDNWHCVQTISESNN------------------GHSSTIWALSFN 152
W E D D+ V IS N+ GH+S I L+ +
Sbjct: 149 DWVSQVRVVPNEKADDDS---VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTAS 205
Query: 153 AKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIA 212
G + S D I +W A+ + + T+S + +FS+ +S
Sbjct: 206 PDGTLIASAGKDGEIMLW-----------NLAAKKAMYTLSAQDE--VFSLAFSPNRYWL 252
Query: 213 SGAADDSVQFFVESKDDLIDG--PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDG 270
+ A ++ F L+D P + + H + S+ WS + L A +D+
Sbjct: 253 AAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAV---SLAWSADGQTLFAGYTDN- 308
Query: 271 MIKIWEL 277
+I++W++
Sbjct: 309 VIRVWQV 315
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 36/244 (14%)
Query: 42 TLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECVSV--LQGHAQDVKMV 98
TLEGH V S++ +A LL + RDK++ W++ ++ V V +GH+ V+
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 65
Query: 99 QWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158
S S+D T+++W D Q GH S + ++ + K +
Sbjct: 66 TLTADGAYALSASWDKTLRLW-----DVATGETYQRFV----GHKSDVMSVDIDKKASMI 116
Query: 159 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASG--AA 216
+S S D TIK+W + L T+ G++D W + + A
Sbjct: 117 ISGSRDKTIKVW------------TIKGQCLATLLGHND-------WVSQVRVVPNEKAD 157
Query: 217 DDSVQFFVESKDDLIDGPSYKMLLKKEK--AHDMDVNSVQWSPGERRLLASASDDGMIKI 274
DDSV D ++ + + H+ ++N++ SP + L+ASA DG I +
Sbjct: 158 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIML 216
Query: 275 WELA 278
W LA
Sbjct: 217 WNLA 220
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 72/307 (23%), Positives = 120/307 (39%), Gaps = 69/307 (22%)
Query: 17 LLATASFDATTCIWEDVGGDYEC---VATLEGHENEVKSVSWNASGTLLATCGRDKSVWI 73
LL +AS D T W+ G D + V + +GH + V+ + A G + DK++ +
Sbjct: 26 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 85
Query: 74 WEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW-------------- 119
W+V G ++ GH DV V ++ S S D TIKVW
Sbjct: 86 WDVATGETYQR---FVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHN 142
Query: 120 -WA--------EDTDSDNWHCVQTISESNN------------------GHSSTIWALSFN 152
W E D D+ V IS N+ GH+S I L+ +
Sbjct: 143 DWVSQVRVVPNEKADDDS---VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTAS 199
Query: 153 AKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIA 212
G + S D I +W A+ + + T+S + +FS+ +S
Sbjct: 200 PDGTLIASAGKDGEIMLW-----------NLAAKKAMYTLSAQDE--VFSLAFSPNRYWL 246
Query: 213 SGAADDSVQFFVESKDDLIDG--PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDG 270
+ A ++ F L+D P + K + H + S+ WS + L A +D+
Sbjct: 247 AAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAV---SLAWSADGQTLFAGYTDN- 302
Query: 271 MIKIWEL 277
+I++W++
Sbjct: 303 VIRVWQV 309
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 36/244 (14%)
Query: 42 TLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECVSV--LQGHAQDVKMV 98
TLEGH V S++ +A LL + RDK++ W++ ++ V V +GH+ V+
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 99 QWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158
S S+D T+++W D Q GH S + ++ + K +
Sbjct: 72 TLTADGAYALSASWDKTLRLW-----DVATGETYQRFV----GHKSDVMSVDIDKKASMI 122
Query: 159 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASG--AA 216
+S S D TIK+W + L T+ G++D W + + A
Sbjct: 123 ISGSRDKTIKVW------------TIKGQCLATLLGHND-------WVSQVRVVPNEKAD 163
Query: 217 DDSVQFFVESKDDLIDGPSYKMLLKKEK--AHDMDVNSVQWSPGERRLLASASDDGMIKI 274
DDSV D ++ + + H+ ++N++ SP + L+ASA DG I +
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIML 222
Query: 275 WELA 278
W LA
Sbjct: 223 WNLA 226
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 72/306 (23%), Positives = 119/306 (38%), Gaps = 69/306 (22%)
Query: 17 LLATASFDATTCIWEDVGGDYEC---VATLEGHENEVKSVSWNASGTLLATCGRDKSVWI 73
LL +AS D T W+ G D + V + +GH + V+ + A G + DK++ +
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 74 WEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW-------------- 119
W+V G ++ GH DV V ++ S S D TIKVW
Sbjct: 92 WDVATGETYQR---FVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHN 148
Query: 120 -WA--------EDTDSDNWHCVQTISESNN------------------GHSSTIWALSFN 152
W E D D+ V IS N+ GH+S I L+ +
Sbjct: 149 DWVSQVRVVPNEKADDDS---VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTAS 205
Query: 153 AKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIA 212
G + S D I +W A+ + + T+S + +FS+ +S
Sbjct: 206 PDGTLIASAGKDGEIMLW-----------NLAAKKAMYTLSAQDE--VFSLAFSPNRYWL 252
Query: 213 SGAADDSVQFFVESKDDLIDG--PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDG 270
+ A ++ F L+D P + K + H + S+ WS + L A +D+
Sbjct: 253 AAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAV---SLAWSADGQTLFAGYTDN- 308
Query: 271 MIKIWE 276
+I++W+
Sbjct: 309 VIRVWQ 314
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 36/244 (14%)
Query: 42 TLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECVSV--LQGHAQDVKMV 98
TLEGH V S++ +A LL + RDK++ W++ ++ V V +GH+ V+
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 99 QWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158
S S+D T+++W D Q GH S + ++ + K +
Sbjct: 72 TLTADGAYALSASWDKTLRLW-----DVATGETYQRFV----GHKSDVMSVDIDKKASMI 122
Query: 159 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASG--AA 216
+S S D TIK+W + L T+ G++D W + + A
Sbjct: 123 ISGSRDKTIKVW------------TIKGQCLATLLGHND-------WVSQVRVVPNEKAD 163
Query: 217 DDSVQFFVESKDDLIDGPSYKMLLKKEK--AHDMDVNSVQWSPGERRLLASASDDGMIKI 274
DDSV D ++ + + H+ ++N++ SP + L+ASA DG I +
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIML 222
Query: 275 WELA 278
W LA
Sbjct: 223 WNLA 226
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 72/307 (23%), Positives = 120/307 (39%), Gaps = 69/307 (22%)
Query: 17 LLATASFDATTCIWEDVGGDYEC---VATLEGHENEVKSVSWNASGTLLATCGRDKSVWI 73
LL +AS D T W+ G D + V + +GH + V+ + A G + DK++ +
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 74 WEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW-------------- 119
W+V G ++ GH DV V ++ S S D TIKVW
Sbjct: 92 WDVATGETYQR---FVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHN 148
Query: 120 -WA--------EDTDSDNWHCVQTISESNN------------------GHSSTIWALSFN 152
W E D D+ V IS N+ GH+S I L+ +
Sbjct: 149 DWVSQVRVVPNEKADDDS---VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTAS 205
Query: 153 AKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIA 212
G + S D I +W A+ + + T+S + +FS+ +S
Sbjct: 206 PDGTLIASAGKDGEIMLW-----------NLAAKKAMYTLSAQDE--VFSLAFSPNRYWL 252
Query: 213 SGAADDSVQFFVESKDDLIDG--PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDG 270
+ A ++ F L+D P + K + H + S+ WS + L A +D+
Sbjct: 253 AAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAV---SLAWSADGQTLFAGYTDN- 308
Query: 271 MIKIWEL 277
+I++W++
Sbjct: 309 VIRVWQV 315
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSW--NASG 59
H + GK LAT S D T I+E G ++ + TL GHE V V W G
Sbjct: 8 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 60 TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP 102
T+LA+C D V IW+ G + ++V H+ V VQW P
Sbjct: 68 TILASCSYDGKVLIWKEENG-RWSQIAVHAVHSASVNSVQWAP 109
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 40 VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ 99
V H + + G LATC DK++ I+EV G + + L GH V V
Sbjct: 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEV-EGETHKLIDTLTGHEGPVWRVD 60
Query: 100 W-HPTM-DVLFSCSYDNTIKVWWAED 123
W HP +L SCSYD + +W E+
Sbjct: 61 WAHPKFGTILASCSYDGKVLIWKEEN 86
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 21/142 (14%)
Query: 140 NGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRT 199
N H+ I + G +L +CS D TIKI+ + G+ + + + T++G H+
Sbjct: 6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVE------GETH---KLIDTLTG-HEGP 55
Query: 200 IFSVHWSREG---IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWS 256
++ V W+ I+AS + D V + E +G ++ + H VNSVQW+
Sbjct: 56 VWRVDWAHPKFGTILASCSYDGKVLIWKEE-----NGRWSQIAV--HAVHSASVNSVQWA 108
Query: 257 PGER-RLLASASDDGMIKIWEL 277
P E LL AS DG + + E
Sbjct: 109 PHEYGPLLLVASSDGKVSVVEF 130
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 55/121 (45%), Gaps = 5/121 (4%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS--G 59
H + GK LAT S D T I+E G ++ + TL GHE V V W G
Sbjct: 8 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 60 TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTM--DVLFSCSYDNTIK 117
T+LA+C D V IW+ G + ++V H+ V VQW P +L S D +
Sbjct: 68 TILASCSYDGKVLIWKEENG-RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 126
Query: 118 V 118
V
Sbjct: 127 V 127
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 93/235 (39%), Gaps = 31/235 (13%)
Query: 59 GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQW-HPTMD-VLFSCSYDNTI 116
G LATC DK++ I+EV G + + L GH V V W HP +L SCSYD +
Sbjct: 21 GKRLATCSSDKTIKIFEV-EGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 79
Query: 117 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 176
+W E+ W + + + +S WA + G L+ S D + + +
Sbjct: 80 LIWKEEN---GRWSQIAVHAVHSASVNSVQWAP--HEYGPLLLVASSDGKVSV----VEF 130
Query: 177 MQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASG---AADDSVQFFVESKDDLI-- 231
++G I H + S W+ I G +S +F D+L+
Sbjct: 131 KENGTTSP------IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI 184
Query: 232 -----DGPSYKMLLKKEKAHDMDVNSVQWSPGE--RRLLASASDDGMIKIWELAN 279
D +Y +L + H V V WSP R LAS S D IW N
Sbjct: 185 WKYNSDAQTY-VLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 238
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 21/142 (14%)
Query: 140 NGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRT 199
N H+ I + G +L +CS D TIKI+ + G+ + + + T++G H+
Sbjct: 6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVE------GETH---KLIDTLTG-HEGP 55
Query: 200 IFSVHWSREG---IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWS 256
++ V W+ I+AS + D V + E +G ++ + H VNSVQW+
Sbjct: 56 VWRVDWAHPKFGTILASCSYDGKVLIWKEE-----NGRWSQIAV--HAVHSASVNSVQWA 108
Query: 257 PGER-RLLASASDDGMIKIWEL 277
P E LL AS DG + + E
Sbjct: 109 PHEYGPLLLVASSDGKVSVVEF 130
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 82/171 (47%), Gaps = 16/171 (9%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HT V +S G+ +A+ D T +++ G E + ++ HE+EV ++++ +
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETG--EKLLDIKAHEDEVLCCAFSSDDSY 671
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD--VLFSCSYDNTIKVW 119
+ATC DK V IW+ G + V H++ V + + +L + S D +K+W
Sbjct: 672 IATCSADKKVKIWDSATG---KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 728
Query: 120 WAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 170
D + C T+ GH++++ F+ + L SCS D T+++W
Sbjct: 729 -----DLNQKECRNTMF----GHTNSVNHCRFSPDDELLASCSADGTLRLW 770
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 85/201 (42%), Gaps = 26/201 (12%)
Query: 2 HTRTVRSCAWSPSGK--LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG 59
H+ V C ++ LLAT S D +W+ EC T+ GH N V ++
Sbjct: 698 HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD--LNQKECRNTMFGHTNSVNHCRFSPDD 755
Query: 60 TLLATCGRDKSVWIWEVMPGNEFECVSVL------QGHAQDVKMV----QWHPTMDVLFS 109
LLA+C D ++ +W+V NE + ++V + +DV+++ W D +
Sbjct: 756 ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIV 815
Query: 110 CSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKI 169
+ + + + H ++E + GH STI F+ V +++
Sbjct: 816 AAKNKVLLF---------DIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVEL 866
Query: 170 WGADITRMQSGD--GYASWRH 188
W D +R++ D G+ SW H
Sbjct: 867 WNID-SRLKVADCRGHLSWVH 886
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 73/335 (21%), Positives = 128/335 (38%), Gaps = 72/335 (21%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H T++ C +SP L A +W ++ + VA GH + V V ++ G+
Sbjct: 839 HHSTIQYCDFSPYDHLAVIALSQYCVELW-NIDSRLK-VADCRGHLSWVHGVMFSPDGSS 896
Query: 62 LATCGRDKSVWIWE------------------VMPGNEFECVSV-----LQGHAQDVKMV 98
T D+++ +WE V NE ++V LQ A +
Sbjct: 897 FLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQI 956
Query: 99 QWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNN-------GHSSTIWALSF 151
+ P V C + V + ++ + ++ I NN GH + + F
Sbjct: 957 DYLPEAQVSCCCLSPHLEYVAFGDEDGA-----IKIIELPNNRVFSSGVGHKKAVRHIQF 1011
Query: 152 NAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGY---HDRTIFSVHWSRE 208
A G L+S S+D I++W Q+GD H T+ + D + S WS +
Sbjct: 1012 TADGKTLISSSEDSVIQVWN-----WQTGDYVFLQAHQETVKDFRLLQDSRLLS--WSFD 1064
Query: 209 G----------------------IIASGAADDSVQFFVESKDDLIDGPSYKML--LKKEK 244
G +++ + D+ +F S D S+ +L L + K
Sbjct: 1065 GTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK 1124
Query: 245 AHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
H+ V +S + LLA+ D+G I+IW +++
Sbjct: 1125 GHNGCVRCSAFSL-DGILLATGDDNGEIRIWNVSD 1158
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 71/180 (39%), Gaps = 23/180 (12%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATL-----------EGHENEV 50
HT +V C +SP +LLA+ S D T +W+ + + E E V
Sbjct: 742 HTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIV 801
Query: 51 KSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSC 110
K SW+A G + ++K V ++++ + GH ++ + P D L
Sbjct: 802 KCCSWSADGDKIIVAAKNK-VLLFDIHTSGLL--AEIHTGHHSTIQYCDFSP-YDHLAVI 857
Query: 111 SYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 170
+ W D+ C GH S + + F+ G ++ SDD TI++W
Sbjct: 858 ALSQYCVELWNIDSRLKVADC--------RGHLSWVHGVMFSPDGSSFLTASDDQTIRVW 909
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWE-DVGGDYECVATLEGHENEVKSVSWNASGT 60
H TV SCA S ++ S D T IW D+ + L+GH V+ +++ G
Sbjct: 1084 HQGTVLSCAISSDATKFSSTSADKTAKIWSFDL---LSPLHELKGHNGCVRCSAFSLDGI 1140
Query: 61 LLATCGRDKSVWIWEVMPGN 80
LLAT + + IW V G
Sbjct: 1141 LLATGDDNGEIRIWNVSDGQ 1160
Score = 34.7 bits (78), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 72/170 (42%), Gaps = 30/170 (17%)
Query: 109 SCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIK 168
SC D T++V+ AE + H + +F++ + +CS D +K
Sbjct: 632 SCGADKTLQVFKAETGEK---------LLDIKAHEDEVLCCAFSSDDSYIATCSADKKVK 682
Query: 169 IWGADITRM-QSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESK 227
IW + ++ + D ++ + C + S ++A+G+ D FF++
Sbjct: 683 IWDSATGKLVHTYDEHSEQVNCCHFTNK----------SNHLLLATGSND----FFLKLW 728
Query: 228 DDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
D + K H VN ++SP + LLAS S DG +++W++
Sbjct: 729 D-----LNQKECRNTMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDV 772
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 82/171 (47%), Gaps = 16/171 (9%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HT V +S G+ +A+ D T +++ G E + ++ HE+EV ++++ +
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETG--EKLLDIKAHEDEVLCCAFSSDDSY 678
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD--VLFSCSYDNTIKVW 119
+ATC DK V IW+ G + V H++ V + + +L + S D +K+W
Sbjct: 679 IATCSADKKVKIWDSATG---KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 735
Query: 120 WAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 170
D + C T+ GH++++ F+ + L SCS D T+++W
Sbjct: 736 -----DLNQKECRNTMF----GHTNSVNHCRFSPDDELLASCSADGTLRLW 777
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 85/201 (42%), Gaps = 26/201 (12%)
Query: 2 HTRTVRSCAWSPSGK--LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG 59
H+ V C ++ LLAT S D +W+ EC T+ GH N V ++
Sbjct: 705 HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD--LNQKECRNTMFGHTNSVNHCRFSPDD 762
Query: 60 TLLATCGRDKSVWIWEVMPGNEFECVSVL------QGHAQDVKMV----QWHPTMDVLFS 109
LLA+C D ++ +W+V NE + ++V + +DV+++ W D +
Sbjct: 763 ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIV 822
Query: 110 CSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKI 169
+ + + + H ++E + GH STI F+ V +++
Sbjct: 823 AAKNKVLLF---------DIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVEL 873
Query: 170 WGADITRMQSGD--GYASWRH 188
W D +R++ D G+ SW H
Sbjct: 874 WNID-SRLKVADCRGHLSWVH 893
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 73/335 (21%), Positives = 128/335 (38%), Gaps = 72/335 (21%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H T++ C +SP L A +W ++ + VA GH + V V ++ G+
Sbjct: 846 HHSTIQYCDFSPYDHLAVIALSQYCVELW-NIDSRLK-VADCRGHLSWVHGVMFSPDGSS 903
Query: 62 LATCGRDKSVWIWE------------------VMPGNEFECVSV-----LQGHAQDVKMV 98
T D+++ +WE V NE ++V LQ A +
Sbjct: 904 FLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQI 963
Query: 99 QWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNN-------GHSSTIWALSF 151
+ P V C + V + ++ + ++ I NN GH + + F
Sbjct: 964 DYLPEAQVSCCCLSPHLEYVAFGDEDGA-----IKIIELPNNRVFSSGVGHKKAVRHIQF 1018
Query: 152 NAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGY---HDRTIFSVHWSRE 208
A G L+S S+D I++W Q+GD H T+ + D + S WS +
Sbjct: 1019 TADGKTLISSSEDSVIQVWN-----WQTGDYVFLQAHQETVKDFRLLQDSRLLS--WSFD 1071
Query: 209 G----------------------IIASGAADDSVQFFVESKDDLIDGPSYKML--LKKEK 244
G +++ + D+ +F S D S+ +L L + K
Sbjct: 1072 GTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK 1131
Query: 245 AHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
H+ V +S + LLA+ D+G I+IW +++
Sbjct: 1132 GHNGCVRCSAFSL-DGILLATGDDNGEIRIWNVSD 1165
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 71/180 (39%), Gaps = 23/180 (12%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATL-----------EGHENEV 50
HT +V C +SP +LLA+ S D T +W+ + + E E V
Sbjct: 749 HTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIV 808
Query: 51 KSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSC 110
K SW+A G + ++K V ++++ + GH ++ + P D L
Sbjct: 809 KCCSWSADGDKIIVAAKNK-VLLFDIHTSGLL--AEIHTGHHSTIQYCDFSP-YDHLAVI 864
Query: 111 SYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 170
+ W D+ C GH S + + F+ G ++ SDD TI++W
Sbjct: 865 ALSQYCVELWNIDSRLKVADC--------RGHLSWVHGVMFSPDGSSFLTASDDQTIRVW 916
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWE-DVGGDYECVATLEGHENEVKSVSWNASGT 60
H TV SCA S ++ S D T IW D+ + L+GH V+ +++ G
Sbjct: 1091 HQGTVLSCAISSDATKFSSTSADKTAKIWSFDL---LSPLHELKGHNGCVRCSAFSLDGI 1147
Query: 61 LLATCGRDKSVWIWEVMPGN 80
LLAT + + IW V G
Sbjct: 1148 LLATGDDNGEIRIWNVSDGQ 1167
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 72/170 (42%), Gaps = 30/170 (17%)
Query: 109 SCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIK 168
SC D T++V+ AE + H + +F++ + +CS D +K
Sbjct: 639 SCGADKTLQVFKAETGEK---------LLDIKAHEDEVLCCAFSSDDSYIATCSADKKVK 689
Query: 169 IWGADITRM-QSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESK 227
IW + ++ + D ++ + C + S ++A+G+ D FF++
Sbjct: 690 IWDSATGKLVHTYDEHSEQVNCCHFTNK----------SNHLLLATGSND----FFLKLW 735
Query: 228 DDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
D + K H VN ++SP + LLAS S DG +++W++
Sbjct: 736 D-----LNQKECRNTMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDV 779
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 55/121 (45%), Gaps = 5/121 (4%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS--G 59
H + GK LAT S D T I+E G ++ + TL GHE V V W G
Sbjct: 10 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 69
Query: 60 TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTM--DVLFSCSYDNTIK 117
T+LA+C D V IW+ G + ++V H+ V VQW P +L S D +
Sbjct: 70 TILASCSYDGKVLIWKEENG-RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 128
Query: 118 V 118
V
Sbjct: 129 V 129
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 97/254 (38%), Gaps = 31/254 (12%)
Query: 40 VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ 99
V H + + G LATC DK++ I+EV G + + L GH V V
Sbjct: 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEV-EGETHKLIDTLTGHEGPVWRVD 62
Query: 100 W-HPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK 157
W HP +L SCSYD + +W E+ W + + + +S WA + G
Sbjct: 63 WAHPKFGTILASCSYDGKVLIWKEEN---GRWSQIAVHAVHSASVNSVQWAP--HEYGPL 117
Query: 158 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASG--- 214
L+ S D + + + ++G I H + S W+ I G
Sbjct: 118 LLVASSDGKVSV----VEFKENGTTSP------IIIDAHAIGVNSASWAPATIEEDGEHN 167
Query: 215 AADDSVQFFVESKDDLI-------DGPSYKMLLKKEKAHDMDVNSVQWSPGE--RRLLAS 265
+S +F D+L+ D +Y +L + H V V WSP R LAS
Sbjct: 168 GTKESRKFVTGGADNLVKIWKYNSDAQTY-VLESTLEGHSDWVRDVAWSPTVLLRSYLAS 226
Query: 266 ASDDGMIKIWELAN 279
S D IW N
Sbjct: 227 VSQDRTCIIWTQDN 240
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 65/283 (22%), Positives = 126/283 (44%), Gaps = 39/283 (13%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H+ V A S +G +AS+D + +W G +C GH +V SV+++
Sbjct: 66 HSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNG--QCQYKFLGHTKDVLSVAFSPDNRQ 123
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQ--GHAQDVKMVQWHPTMD--VLFSCSYDNTIK 117
+ + GRD ++ +W V + EC+ L H V V++ P++D V+ S +DN +K
Sbjct: 124 IVSGGRDNALRVWNV----KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVK 179
Query: 118 VWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRM 177
VW D V + GH++ + +++ + G S D ++W D+T+
Sbjct: 180 VW-----DLATGRLVTDL----KGHTNYVTSVTVSPDGSLCASSDKDGVARLW--DLTKG 228
Query: 178 QSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFF-VESKDDLID-GPS 235
++ A+ + I +R +W A + ++ F +E+KD +++ P
Sbjct: 229 EALSEMAAGAPINQICFSPNR-----YW------MCAATEKGIRIFDLENKDIIVELAPE 277
Query: 236 YKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278
+ + K + S+ WS + L S D +I++W ++
Sbjct: 278 H----QGSKKIVPECVSIAWS-ADGSTLYSGYTDNVIRVWGVS 315
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 100/239 (41%), Gaps = 36/239 (15%)
Query: 43 LEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP 102
LEGH V V+ + +G + D S+ +W + G +C GH +DV V + P
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNG---QCQYKFLGHTKDVLSVAFSP 119
Query: 103 TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS 162
+ S DN ++VW + C+ T+S H+ + + F+ D V S
Sbjct: 120 DNRQIVSGGRDNALRVWNVKG------ECMHTLSR--GAHTDWVSCVRFSPSLDAPVIVS 171
Query: 163 D--DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSV 220
D +K+W A+ R + + G H + SV S +G + + + D V
Sbjct: 172 GGWDNLVKVW-----------DLATGRLVTDLKG-HTNYVTSVTVSPDGSLCASSDKDGV 219
Query: 221 QFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
DL G + E A +N + +SP R + +A++ G I+I++L N
Sbjct: 220 ARLW----DLTKGEAL-----SEMAAGAPINQICFSP-NRYWMCAATEKG-IRIFDLEN 267
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 103/244 (42%), Gaps = 36/244 (14%)
Query: 42 TLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECVSV--LQGHAQDVKMV 98
TLEGH V S++ +A LL + RDK++ W++ ++ V V +GH+ V+
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 99 QWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158
S S+D T+++W D Q GH S + ++ + K +
Sbjct: 72 TLTADGAYALSASWDKTLRLW-----DVATGETYQRFV----GHKSDVXSVDIDKKASXI 122
Query: 159 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASG--AA 216
+S S D TIK+W + L T+ G++D W + + A
Sbjct: 123 ISGSRDKTIKVW------------TIKGQCLATLLGHND-------WVSQVRVVPNEKAD 163
Query: 217 DDSVQFFVESKDDLIDGPSYKMLLKKEK--AHDMDVNSVQWSPGERRLLASASDDGMIKI 274
DDSV D + + + H+ ++N++ SP + L+ASA DG I +
Sbjct: 164 DDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIXL 222
Query: 275 WELA 278
W LA
Sbjct: 223 WNLA 226
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/307 (23%), Positives = 118/307 (38%), Gaps = 69/307 (22%)
Query: 17 LLATASFDATTCIWEDVGGDYEC---VATLEGHENEVKSVSWNASGTLLATCGRDKSVWI 73
LL +AS D T W+ G D + V + +GH + V+ + A G + DK++ +
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 74 WEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW-------------- 119
W+V G ++ GH DV V + S S D TIKVW
Sbjct: 92 WDVATGETYQR---FVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLATLLGHN 148
Query: 120 -WA--------EDTDSDNWHCVQTISESNN------------------GHSSTIWALSFN 152
W E D D+ V IS N+ GH+S I L+ +
Sbjct: 149 DWVSQVRVVPNEKADDDS---VTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTAS 205
Query: 153 AKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIA 212
G + S D I +W A+ + T+S + +FS+ +S
Sbjct: 206 PDGTLIASAGKDGEIXLW-----------NLAAKKAXYTLSAQDE--VFSLAFSPNRYWL 252
Query: 213 SGAADDSVQFFVESKDDLIDG--PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDG 270
+ A ++ F L+D P + K + H + S+ WS + L A +D+
Sbjct: 253 AAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAV---SLAWSADGQTLFAGYTDN- 308
Query: 271 MIKIWEL 277
+I++W++
Sbjct: 309 VIRVWQV 315
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 17/127 (13%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN----- 56
H + + SP G L+A+A D +W + TL ++EV S++++
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIXLWNLAA--KKAXYTLSA-QDEVFSLAFSPNRYW 251
Query: 57 ---ASGTLLATCGRDKSVWIWEVMPGNEFECVS-VLQGHAQDVKMVQWHPTMDVLFSCSY 112
A+ T + D + ++ P EF S + HA + W LF+
Sbjct: 252 LAAATATGIKVFSLDPQYLVDDLRP--EFAGYSKAAEPHAVSLA---WSADGQTLFAGYT 306
Query: 113 DNTIKVW 119
DN I+VW
Sbjct: 307 DNVIRVW 313
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 55/121 (45%), Gaps = 5/121 (4%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS--G 59
H + GK +AT S D T I+E G ++ + TL GHE V V W G
Sbjct: 8 HNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 60 TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTM--DVLFSCSYDNTIK 117
T+LA+C D V IW+ G + ++V H+ V VQW P +L S D +
Sbjct: 68 TILASCSYDGKVMIWKEENG-RWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVS 126
Query: 118 V 118
V
Sbjct: 127 V 127
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 97/254 (38%), Gaps = 31/254 (12%)
Query: 40 VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ 99
V H + + G +ATC DK++ I+EV G + + L GH V V
Sbjct: 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEV-EGETHKLIDTLTGHEGPVWRVD 60
Query: 100 W-HPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK 157
W HP +L SCSYD + +W E+ W + + + +S WA + G
Sbjct: 61 WAHPKFGTILASCSYDGKVMIWKEEN---GRWSQIAVHAVHSASVNSVQWAP--HEYGPM 115
Query: 158 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASG--- 214
L+ S D + + + ++G I H + S W+ I G
Sbjct: 116 LLVASSDGKVSV----VEFKENGTTSP------IIIDAHAIGVNSASWAPATIEEDGEHN 165
Query: 215 AADDSVQFFVESKDDLI-------DGPSYKMLLKKEKAHDMDVNSVQWSPGE--RRLLAS 265
+S +F D+L+ D +Y +L + H V V WSP R +AS
Sbjct: 166 GTKESRKFVTGGADNLVKIWKYNSDAQTY-VLESTLEGHSDWVRDVAWSPTVLLRSYMAS 224
Query: 266 ASDDGMIKIWELAN 279
S D IW N
Sbjct: 225 VSQDRTCIIWTQDN 238
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 125/288 (43%), Gaps = 50/288 (17%)
Query: 2 HTRTVRSCAWSP--SGKLLATASFDATTCIWEDVGGDYE---CVATLEGHENEVKSVSWN 56
HT V + A +P + ++ +AS D + +W+ D L GH + V+ V +
Sbjct: 381 HTDMVTAIA-TPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLS 439
Query: 57 ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 116
+ G + D + +W++ G GH +DV V + + S S D TI
Sbjct: 440 SDGQFALSGSWDGELRLWDLAAG---VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTI 496
Query: 117 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF--NAKGDKLVSCSDDLTIKIWGADI 174
K+W + C TISE GH + + F N +VS S D T+K+W
Sbjct: 497 KLW------NTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN 550
Query: 175 TRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDG 233
+++S T++G H + +V S +G + ASG D V + DL +G
Sbjct: 551 CKLRS-----------TLAG-HTGYVSTVAVSPDGSLCASGGKDGVVLLW-----DLAEG 593
Query: 234 PSYKMLLKKEKAHDMDVNSVQ----WSPGERRLLASASDDGMIKIWEL 277
+K + ++ NSV +SP R L +A++ G IKIW+L
Sbjct: 594 ---------KKLYSLEANSVIHALCFSP-NRYWLCAATEHG-IKIWDL 630
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 79/167 (47%), Gaps = 23/167 (13%)
Query: 18 LATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVM 77
+ +AS+D T +W + + +TL GH V +V+ + G+L A+ G+D V +W++
Sbjct: 534 IVSASWDKTVKVWNL--SNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLA 591
Query: 78 PGNE---FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQT 134
G + E SV+ HA + + P L + + ++ IK+W E V
Sbjct: 592 EGKKLYSLEANSVI--HA-----LCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDL 643
Query: 135 ISES----NNGHSST----IWALSFN--AKGDKLVSCSDDLTIKIWG 171
+E+ N+G ++T I+ S N A G L S D I++WG
Sbjct: 644 KAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWG 690
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 13/136 (9%)
Query: 40 VATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEF----ECVSVLQGHAQD 94
V + GH V ++W + ++A+ D +V +WE+ G E V L+GH +
Sbjct: 74 VPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR 133
Query: 95 VKMVQWHPT-MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA 153
V +V WHPT +VL S DN I VW D V T+ + H TI+++ ++
Sbjct: 134 VGIVAWHPTAQNVLLSAGXDNVILVW-----DVGTGAAVLTLGP--DVHPDTIYSVDWSR 186
Query: 154 KGDKLVSCSDDLTIKI 169
G + + D +++
Sbjct: 187 DGALICTSCRDKRVRV 202
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 2 HTRTVRSCAWSP-SGKLLATASFDATTCIWEDVGGDY-----ECVATLEGHENEVKSVSW 55
HT V AW P + ++A+ S D T +WE G E V TLEGH V V+W
Sbjct: 80 HTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW 139
Query: 56 NASG-TLLATCGRDKSVWIWEV 76
+ + +L + G D + +W+V
Sbjct: 140 HPTAQNVLLSAGXDNVILVWDV 161
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 2 HTRTVRSCAWSPSGK-LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT 60
HT+ V AW P+ + +L +A D +W+ G + H + + SV W+ G
Sbjct: 130 HTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA 189
Query: 61 LLATCGRDKSVWIWEVMPGN 80
L+ T RDK V + E G
Sbjct: 190 LICTSCRDKRVRVIEPRKGT 209
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 15/150 (10%)
Query: 85 VSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHS 143
V ++ GH V + W P D V+ S S D T+ VW E D ++ + GH+
Sbjct: 74 VPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVW--EIPDGGLVLPLREPVITLEGHT 131
Query: 144 STIWALSFNAKGDK-LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFS 202
+ ++++ L+S D I +W G G A L H TI+S
Sbjct: 132 KRVGIVAWHPTAQNVLLSAGXDNVILVWDV-------GTGAAV---LTLGPDVHPDTIYS 181
Query: 203 VHWSREG-IIASGAADDSVQFFVESKDDLI 231
V WSR+G +I + D V+ K ++
Sbjct: 182 VDWSRDGALICTSCRDKRVRVIEPRKGTVV 211
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 196 HDRTIFSVHWS--REGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSV 253
H + + W + +IASG+ D +V + E D + P + ++ E H V V
Sbjct: 80 HTAPVLDIAWXPHNDNVIASGSEDCTVMVW-EIPDGGLVLPLREPVITLE-GHTKRVGIV 137
Query: 254 QWSPGERRLLASASDDGMIKIWELAN 279
W P + +L SA D +I +W++
Sbjct: 138 AWHPTAQNVLLSAGXDNVILVWDVGT 163
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 105/255 (41%), Gaps = 48/255 (18%)
Query: 46 HENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQW-HPTM 104
HE+ + + GT LATC D+SV I++V G + ++ L+GH V V W HP
Sbjct: 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMY 70
Query: 105 -DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK--GDKLVSC 161
++L SCSYD + +W E+ + S + GH S++ ++ + G L
Sbjct: 71 GNILASCSYDRKVIIWREENGTWEK-------SHEHAGHDSSVNSVCWAPHDYGLILACG 123
Query: 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI----------- 210
S D I + + G W + I+ H +V W+ +
Sbjct: 124 SSDGAIS--------LLTYTGEGQWE-VKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQ 174
Query: 211 -------IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPG---ER 260
ASG D+ ++ + E +D +K K E AH V V W+P
Sbjct: 175 KPNYIKRFASGGCDNLIKLWKEEEDG-----QWKEEQKLE-AHSDWVRDVAWAPSIGLPT 228
Query: 261 RLLASASDDGMIKIW 275
+AS S DG + IW
Sbjct: 229 STIASCSQDGRVFIW 243
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 93/249 (37%), Gaps = 32/249 (12%)
Query: 2 HTRTVRSCAWSPS--GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS- 58
H V AW+ G +LA+ S+D IW + G +E GH++ V SV W
Sbjct: 56 HEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHD 115
Query: 59 -GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT-------------- 103
G +LA D ++ + ++E + H V W P
Sbjct: 116 YGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQK 175
Query: 104 ---MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160
+ S DN IK+W ++ + W Q + ++ WA S + S
Sbjct: 176 PNYIKRFASGGCDNLIKLW--KEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIAS 233
Query: 161 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS-REGIIASGAADDS 219
CS D + IW D D ++ + ++D ++ V WS I+A D+
Sbjct: 234 CSQDGRVFIWTCD-------DASSNTWSPKLLHKFND-VVWHVSWSITANILAVSGGDNK 285
Query: 220 VQFFVESKD 228
V + ES D
Sbjct: 286 VTLWKESVD 294
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 15 GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS--GTLLATCGRDKSVW 72
G LAT S D + I++ G +A L GHE V V+W G +LA+C D+ V
Sbjct: 25 GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI 84
Query: 73 IWEVMPGNEFECVSVLQGHAQDVKMVQWHP 102
IW G +E GH V V W P
Sbjct: 85 IWREENGT-WEKSHEHAGHDSSVNSVCWAP 113
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 2 HTRTVRSCAWSPSGKL----LATASFDATTCIW--EDVGGDYECVATLEGHENEVKSVSW 55
H+ VR AW+PS L +A+ S D IW +D + L + V VSW
Sbjct: 211 HSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSW 270
Query: 56 NASGTLLATCGRDKSVWIWEVMPGNEFECVS 86
+ + +LA G D V +W+ ++ C+S
Sbjct: 271 SITANILAVSGGDNKVTLWKESVDGQWVCIS 301
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 21/147 (14%)
Query: 132 VQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCT 191
V I+ + H I + G +L +CS D ++KI+ +++G +
Sbjct: 2 VSVINTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIF-----DVRNGGQIL----IAD 52
Query: 192 ISGYHDRTIFSVHWSRE---GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDM 248
+ G H+ ++ V W+ I+AS + D V + E +G K + HD
Sbjct: 53 LRG-HEGPVWQVAWAHPMYGNILASCSYDRKVIIWREE-----NGTWEKS--HEHAGHDS 104
Query: 249 DVNSVQWSPGERRL-LASASDDGMIKI 274
VNSV W+P + L LA S DG I +
Sbjct: 105 SVNSVCWAPHDYGLILACGSSDGAISL 131
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 48/103 (46%), Gaps = 3/103 (2%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS--G 59
H + GK AT S D T I+E G ++ + TL GHE V V W G
Sbjct: 8 HNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 60 TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP 102
T+LA+C D V IW+ G + ++V H+ V VQW P
Sbjct: 68 TILASCSYDGKVXIWKEENG-RWSQIAVHAVHSASVNSVQWAP 109
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 95/254 (37%), Gaps = 31/254 (12%)
Query: 40 VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ 99
V H + + G ATC DK++ I+EV G + + L GH V V
Sbjct: 2 VVIANAHNEXIHDAVXDYYGKRXATCSSDKTIKIFEV-EGETHKLIDTLTGHEGPVWRVD 60
Query: 100 W-HPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK 157
W HP +L SCSYD + +W E+ W + + + +S WA + G
Sbjct: 61 WAHPKFGTILASCSYDGKVXIWKEEN---GRWSQIAVHAVHSASVNSVQWAP--HEYGPX 115
Query: 158 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASG--- 214
L+ S D + + + ++G I H + S W+ I G
Sbjct: 116 LLVASSDGKVSV----VEFKENGTTSP------IIIDAHAIGVNSASWAPATIEEDGEHN 165
Query: 215 AADDSVQFFVESKDDLI-------DGPSYKMLLKKEKAHDMDVNSVQWSPGE--RRLLAS 265
+S +F D+L+ D +Y +L + H V V WSP R AS
Sbjct: 166 GTKESRKFVTGGADNLVKIWKYNSDAQTY-VLESTLEGHSDWVRDVAWSPTVLLRSYXAS 224
Query: 266 ASDDGMIKIWELAN 279
S D IW N
Sbjct: 225 VSQDRTCIIWTQDN 238
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 13/136 (9%)
Query: 40 VATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEF----ECVSVLQGHAQD 94
V + GH V ++W + ++A+ D +V +WE+ G E V L+GH +
Sbjct: 74 VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR 133
Query: 95 VKMVQWHPT-MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA 153
V +V WHPT +VL S DN I VW D V T+ + H TI+++ ++
Sbjct: 134 VGIVAWHPTAQNVLLSAGCDNVILVW-----DVGTGAAVLTLGP--DVHPDTIYSVDWSR 186
Query: 154 KGDKLVSCSDDLTIKI 169
G + + D +++
Sbjct: 187 DGALICTSCRDKRVRV 202
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 2 HTRTVRSCAWSP-SGKLLATASFDATTCIWEDVGGDY-----ECVATLEGHENEVKSVSW 55
HT V AW P + ++A+ S D T +WE G E V TLEGH V V+W
Sbjct: 80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW 139
Query: 56 NASG-TLLATCGRDKSVWIWEVMPG 79
+ + +L + G D + +W+V G
Sbjct: 140 HPTAQNVLLSAGCDNVILVWDVGTG 164
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 2 HTRTVRSCAWSPSGK-LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT 60
HT+ V AW P+ + +L +A D +W+ G + H + + SV W+ G
Sbjct: 130 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA 189
Query: 61 LLATCGRDKSVWIWEVMPGN 80
L+ T RDK V + E G
Sbjct: 190 LICTSCRDKRVRVIEPRKGT 209
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 15/150 (10%)
Query: 85 VSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHS 143
V ++ GH V + W P D V+ S S D T+ VW E D ++ + GH+
Sbjct: 74 VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVW--EIPDGGLVLPLREPVITLEGHT 131
Query: 144 STIWALSFNAKGDK-LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFS 202
+ ++++ L+S D I +W G G A L H TI+S
Sbjct: 132 KRVGIVAWHPTAQNVLLSAGCDNVILVWDV-------GTGAAV---LTLGPDVHPDTIYS 181
Query: 203 VHWSREG-IIASGAADDSVQFFVESKDDLI 231
V WSR+G +I + D V+ K ++
Sbjct: 182 VDWSRDGALICTSCRDKRVRVIEPRKGTVV 211
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 196 HDRTIFSVHWS--REGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSV 253
H + + W + +IASG+ D +V + E D + P + ++ E H V V
Sbjct: 80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVW-EIPDGGLVLPLREPVITLE-GHTKRVGIV 137
Query: 254 QWSPGERRLLASASDDGMIKIWELAN 279
W P + +L SA D +I +W++
Sbjct: 138 AWHPTAQNVLLSAGCDNVILVWDVGT 163
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 34/51 (66%)
Query: 38 ECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVL 88
E ++ + H EV SVSWN +GT+L++ G D V +W+ NEF+C+SV+
Sbjct: 295 ELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSVI 345
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 112/254 (44%), Gaps = 28/254 (11%)
Query: 45 GHENEVKSVSWNASGTLLATCGRDKSVWIWEV-MPGNEFECVSVLQGHAQDVKMVQWHPT 103
GH++ V V ++ G +ATC D+ + ++++ + +E + H + + W
Sbjct: 7 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 66
Query: 104 M--DVLFSCSYDNTIKVWWAEDTDSD-----NWHCVQTISESNNGHSSTIWALSFNAKGD 156
++ S SYD T+K+ W ED D + W+ + T+++S S +A + G
Sbjct: 67 EYGRIIASASYDKTVKL-WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAH--LGL 123
Query: 157 KLVSCSDDLTIKIWGA-DITRMQSGDGYASWRHLCTISGYHDRTIFSVHW-----SREGI 210
KL +D ++++ A + + ++S + + L H ++ F + W S E +
Sbjct: 124 KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKL 183
Query: 211 IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERR---LLASAS 267
S A + + KD + + K H + S+ W+P R L+A+
Sbjct: 184 AVS--ALEQAIIYQRGKDGKL------HVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC 235
Query: 268 DDGMIKIWELANTL 281
DG I+I+++ L
Sbjct: 236 KDGRIRIFKITEKL 249
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 77/183 (42%), Gaps = 25/183 (13%)
Query: 2 HTRTVRSCAWSPS---GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS 58
H ++ +W PS + LA ++ + G A L GH++ ++S+SW S
Sbjct: 164 HLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPS 223
Query: 59 ----GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN 114
L+AT +D + I F+ L A + + T +F S D
Sbjct: 224 IGRWYQLIATGCKDGRIRI--------FKITEKLSPLASEESL-----TNSNMFDNSADV 270
Query: 115 TIKVWWAEDTDSDNWHCVQT-----ISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKI 169
+ D++++ +Q+ + ++ H+ +W++S+N G L S DD +++
Sbjct: 271 DMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRL 330
Query: 170 WGA 172
W A
Sbjct: 331 WKA 333
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 22/147 (14%)
Query: 139 NNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWG--ADITRMQSGDGYASWRHLCTISGYH 196
++GH + + ++ G + +CS D IK++ D + + D SWR H
Sbjct: 5 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSD---SWR-------AH 54
Query: 197 DRTIFSVHWSRE---GIIASGAADDSVQFFVESKD-DLIDGPSYKML--LKKEKAHDMDV 250
D +I ++ W+ IIAS + D +V+ + E D + G + L L K +
Sbjct: 55 DSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKG---SL 111
Query: 251 NSVQWSPGERRL-LASASDDGMIKIWE 276
SV+++P L LA +DG++++++
Sbjct: 112 YSVKFAPAHLGLKLACLGNDGILRLYD 138
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Query: 2 HTRTVRSCAW-SPS-GKLLATASFDATTCIWEDVGGDYEC-------VATLEGHENEVKS 52
H ++ + W SP G+++A+AS+D T +WE+ EC + TL + + S
Sbjct: 54 HDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYS 113
Query: 53 VSWNAS--GTLLATCGRDKSVWIWEVMPGNEFE 83
V + + G LA G D + +++ + ++
Sbjct: 114 VKFAPAHLGLKLACLGNDGILRLYDALEPSDLR 146
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 6/137 (4%)
Query: 43 LEGHENEVKSVSWNASGTLLATCGRD-KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWH 101
L G + SV + S G D +V I+E G F+ S H + V V+++
Sbjct: 143 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFE---GPPFKFKSTFGEHTKFVHSVRYN 199
Query: 102 PTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161
P + S D TI ++ D + S N HS +++ L+++ G K+ S
Sbjct: 200 PDGSLFASTGGDGTIVLY--NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA 257
Query: 162 SDDLTIKIWGADITRMQ 178
S D TIKIW +++
Sbjct: 258 SADKTIKIWNVATLKVE 274
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 93/228 (40%), Gaps = 27/228 (11%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H+ SPSG A+ IW+ + T+ VK +SW++
Sbjct: 58 HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKR 117
Query: 62 LATCGRDKS----VWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDV-LFSCSYDNTI 116
+A G + V++++ N L G A+ + V + P+ + S S DNT+
Sbjct: 118 IAAVGEGRERFGHVFLFDTGTSN-----GNLTGQARAMNSVDFKPSRPFRIISGSDDNTV 172
Query: 117 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW-GADIT 175
++ + + T E H+ + ++ +N G S D TI ++ G D T
Sbjct: 173 AIF-----EGPPFKFKSTFGE----HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT 223
Query: 176 RMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQF 222
+ G L ++ H ++F + WS +G IAS +AD +++
Sbjct: 224 KT----GVFEDDSLKNVA--HSGSVFGLTWSPDGTKIASASADKTIKI 265
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 2/113 (1%)
Query: 8 SC-AWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCG 66
SC A S + +A D+ +++ G V T+ H E+ SV+++ +G L
Sbjct: 452 SCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV-HPAEITSVAFSNNGAFLVATD 510
Query: 67 RDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 119
+ + V + V E + H V V W P L + S DN++ VW
Sbjct: 511 QSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVW 563
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWE-DVGGDYECVATLEGHENEVKSVSWNASG 59
HT V +WSP LAT S D + +W + D+ + + V SV W +
Sbjct: 534 FHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNE 592
Query: 60 TLLATCGRDKSVWIWEV 76
T + + G+D ++ W V
Sbjct: 593 TTIVSAGQDSNIKFWNV 609
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 73/345 (21%), Positives = 124/345 (35%), Gaps = 86/345 (24%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWE----------DVGGDYE-----------CV 40
H+ +V WSP G +A+AS D T IW VG E +
Sbjct: 238 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL 297
Query: 41 ATLE--------------------GHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN 80
++ GH + ++S +A G L + + + W++ G
Sbjct: 298 VSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI 357
Query: 81 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNN 140
+ HA + ++ D LF+ S+D+ +KV A + D+ V N
Sbjct: 358 SNRVFPDV--HATMITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVA------N 408
Query: 141 GHSSTIWALSFNAKGD-KLVSCSDDLTIKIWG----------------ADITRMQSGDGY 183
SS L+ +A GD + +C + I G ++ + + G
Sbjct: 409 KLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQ 468
Query: 184 ASWRHLCTISG---------YHDRTIFSVHWSREG--IIASGAADDSVQFFVESKDDLID 232
S H+ +SG H I SV +S G ++A+ + + + V + +L
Sbjct: 469 DSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH 528
Query: 233 GPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
S+ H V V WSP R LA+ S D + +W +
Sbjct: 529 TNSWTF-------HTAKVACVSWSPDNVR-LATGSLDNSVIVWNM 565
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 34/51 (66%)
Query: 38 ECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVL 88
E ++ + H EV SVSWN +GT+L++ G D V +W+ NEF+C+SV+
Sbjct: 297 ELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSVI 347
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 112/254 (44%), Gaps = 28/254 (11%)
Query: 45 GHENEVKSVSWNASGTLLATCGRDKSVWIWEV-MPGNEFECVSVLQGHAQDVKMVQWHPT 103
GH++ V V ++ G +ATC D+ + ++++ + +E + H + + W
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 104 M--DVLFSCSYDNTIKVWWAEDTDSD-----NWHCVQTISESNNGHSSTIWALSFNAKGD 156
++ S SYD T+K+ W ED D + W+ + T+++S S +A + G
Sbjct: 69 EYGRIIASASYDKTVKL-WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAH--LGL 125
Query: 157 KLVSCSDDLTIKIWGA-DITRMQSGDGYASWRHLCTISGYHDRTIFSVHW-----SREGI 210
KL +D ++++ A + + ++S + + L H ++ F + W S E +
Sbjct: 126 KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKL 185
Query: 211 IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERR---LLASAS 267
S A + + KD + + K H + S+ W+P R L+A+
Sbjct: 186 AVS--ALEQAIIYQRGKDGKL------HVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC 237
Query: 268 DDGMIKIWELANTL 281
DG I+I+++ L
Sbjct: 238 KDGRIRIFKITEKL 251
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 77/183 (42%), Gaps = 25/183 (13%)
Query: 2 HTRTVRSCAWSPS---GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS 58
H ++ +W PS + LA ++ + G A L GH++ ++S+SW S
Sbjct: 166 HLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPS 225
Query: 59 ----GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN 114
L+AT +D + I F+ L A + + T +F S D
Sbjct: 226 IGRWYQLIATGCKDGRIRI--------FKITEKLSPLASEESL-----TNSNMFDNSADV 272
Query: 115 TIKVWWAEDTDSDNWHCVQT-----ISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKI 169
+ D++++ +Q+ + ++ H+ +W++S+N G L S DD +++
Sbjct: 273 DMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRL 332
Query: 170 WGA 172
W A
Sbjct: 333 WKA 335
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 188 HLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAH 246
H+ HD + V + G +A+ ++D ++ F KD S L +AH
Sbjct: 2 HMQPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKD-----TSNWELSDSWRAH 56
Query: 247 DMDVNSVQW-SPGERRLLASASDDGMIKIWE 276
D + ++ W SP R++ASAS D +K+WE
Sbjct: 57 DSSIVAIDWASPEYGRIIASASYDKTVKLWE 87
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 22/147 (14%)
Query: 139 NNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWG--ADITRMQSGDGYASWRHLCTISGYH 196
++GH + + ++ G + +CS D IK++ D + + D SWR H
Sbjct: 7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSD---SWR-------AH 56
Query: 197 DRTIFSVHWSRE---GIIASGAADDSVQFFVESKD-DLIDGPSYKML--LKKEKAHDMDV 250
D +I ++ W+ IIAS + D +V+ + E D + G + L L K +
Sbjct: 57 DSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKG---SL 113
Query: 251 NSVQWSPGERRL-LASASDDGMIKIWE 276
SV+++P L LA +DG++++++
Sbjct: 114 YSVKFAPAHLGLKLACLGNDGILRLYD 140
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Query: 2 HTRTVRSCAW-SPS-GKLLATASFDATTCIWEDVGGDYEC-------VATLEGHENEVKS 52
H ++ + W SP G+++A+AS+D T +WE+ EC + TL + + S
Sbjct: 56 HDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYS 115
Query: 53 VSWNAS--GTLLATCGRDKSVWIWEVMPGNEFE 83
V + + G LA G D + +++ + ++
Sbjct: 116 VKFAPAHLGLKLACLGNDGILRLYDALEPSDLR 148
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 10/126 (7%)
Query: 56 NASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT-MDVLFSCSYDN 114
N S LLA G S I ++ +C+ GH + +++HP ++L S S D+
Sbjct: 82 NTSHPLLAVAG---SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDH 138
Query: 115 TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI 174
+++W + TD+ + I GH + + ++ G+K++SC D ++K+W +
Sbjct: 139 ALRLWNIQ-TDT-----LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 192
Query: 175 TRMQSG 180
RM +
Sbjct: 193 KRMMNA 198
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 7/117 (5%)
Query: 8 SCAWS----PSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS-GTLL 62
+CAW+ S LLA A I + +C+ GH N + + ++ LL
Sbjct: 74 TCAWTYDSNTSHPLLAVAGSRGIIRIINPIT--MQCIKHYVGHGNAINELKFHPRDPNLL 131
Query: 63 ATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 119
+ +D ++ +W + ++GH +V + + + SC D+++K+W
Sbjct: 132 LSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 188
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 43 LEGHENEVKSVSWNASGTLLATCGRDKSVWIWEV 76
+EGH +EV S ++ G + +CG D S+ +W +
Sbjct: 157 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 190
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 10/126 (7%)
Query: 56 NASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT-MDVLFSCSYDN 114
N S LLA G S I ++ +C+ GH + +++HP ++L S S D+
Sbjct: 118 NTSHPLLAVAG---SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDH 174
Query: 115 TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI 174
+++W + TD+ + I GH + + ++ G+K++SC D ++K+W +
Sbjct: 175 ALRLWNIQ-TDT-----LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 228
Query: 175 TRMQSG 180
RM +
Sbjct: 229 KRMMNA 234
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 7/117 (5%)
Query: 8 SCAWS----PSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS-GTLL 62
+CAW+ S LLA A I + +C+ GH N + + ++ LL
Sbjct: 110 TCAWTYDSNTSHPLLAVAGSRGIIRIINPIT--MQCIKHYVGHGNAINELKFHPRDPNLL 167
Query: 63 ATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 119
+ +D ++ +W + ++GH +V + + + SC D+++K+W
Sbjct: 168 LSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 224
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 43 LEGHENEVKSVSWNASGTLLATCGRDKSVWIWEV 76
+EGH +EV S ++ G + +CG D S+ +W +
Sbjct: 193 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 226
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 10/126 (7%)
Query: 56 NASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT-MDVLFSCSYDN 114
N S LLA G S I ++ +C+ GH + +++HP ++L S S D+
Sbjct: 77 NTSHPLLAVAG---SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDH 133
Query: 115 TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI 174
+++W + TD+ + I GH + + ++ G+K++SC D ++K+W +
Sbjct: 134 ALRLWNIQ-TDT-----LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 187
Query: 175 TRMQSG 180
RM +
Sbjct: 188 KRMMNA 193
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 7/117 (5%)
Query: 8 SCAWS----PSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS-GTLL 62
+CAW+ S LLA A I + +C+ GH N + + ++ LL
Sbjct: 69 TCAWTYDSNTSHPLLAVAGSRGIIRIINPIT--MQCIKHYVGHGNAINELKFHPRDPNLL 126
Query: 63 ATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 119
+ +D ++ +W + ++GH +V + + + SC D+++K+W
Sbjct: 127 LSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 183
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 2 HTRTVRSCAWSPS-GKLLATASFDATTCIWEDVGGD--YECVATLEGHENEVKSVSWNAS 58
H + + P LL + S D +W ++ D +EGH +EV S ++
Sbjct: 109 HGNAINELKFHPRDPNLLLSVSKDHALRLW-NIQTDTLVAIFGGVEGHRDEVLSADYDLL 167
Query: 59 GTLLATCGRDKSVWIWEV 76
G + +CG D S+ +W +
Sbjct: 168 GEKIMSCGMDHSLKLWRI 185
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 10/126 (7%)
Query: 56 NASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT-MDVLFSCSYDN 114
N S LLA G S I ++ +C+ GH + +++HP ++L S S D+
Sbjct: 81 NTSHPLLAVAG---SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDH 137
Query: 115 TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI 174
+++W + TD+ + I GH + + ++ G+K++SC D ++K+W +
Sbjct: 138 ALRLWNIQ-TDT-----LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 191
Query: 175 TRMQSG 180
RM +
Sbjct: 192 KRMMNA 197
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 7/117 (5%)
Query: 8 SCAWS----PSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS-GTLL 62
+CAW+ S LLA A I + +C+ GH N + + ++ LL
Sbjct: 73 TCAWTYDSNTSHPLLAVAGSRGIIRIINPIT--MQCIKHYVGHGNAINELKFHPRDPNLL 130
Query: 63 ATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 119
+ +D ++ +W + ++GH +V + + + SC D+++K+W
Sbjct: 131 LSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 187
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 43 LEGHENEVKSVSWNASGTLLATCGRDKSVWIWEV 76
+EGH +EV S ++ G + +CG D S+ +W +
Sbjct: 156 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 189
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 10/126 (7%)
Query: 56 NASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT-MDVLFSCSYDN 114
N S LLA G S I ++ +C+ GH + +++HP ++L S S D+
Sbjct: 81 NTSHPLLAVAG---SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDH 137
Query: 115 TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI 174
+++W + TD+ + I GH + + ++ G+K++SC D ++K+W +
Sbjct: 138 ALRLWNIQ-TDT-----LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 191
Query: 175 TRMQSG 180
RM +
Sbjct: 192 KRMMNA 197
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 7/117 (5%)
Query: 8 SCAWS----PSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS-GTLL 62
+CAW+ S LLA A I + +C+ GH N + + ++ LL
Sbjct: 73 TCAWTYDSNTSHPLLAVAGSRGIIRIINPIT--MQCIKHYVGHGNAINELKFHPRDPNLL 130
Query: 63 ATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 119
+ +D ++ +W + ++GH +V + + + SC D+++K+W
Sbjct: 131 LSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 187
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 43 LEGHENEVKSVSWNASGTLLATCGRDKSVWIWEV 76
+EGH +EV S ++ G + +CG D S+ +W +
Sbjct: 156 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 189
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/278 (19%), Positives = 113/278 (40%), Gaps = 29/278 (10%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H+ V S G+ + S+D T +W+ G GH +V SV++++
Sbjct: 85 HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG--TTTRRFVGHTKDVLSVAFSSDNRQ 142
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP--TMDVLFSCSYDNTIKVW 119
+ + RDK++ +W + ++ + H++ V V++ P + ++ SC +D +KVW
Sbjct: 143 IVSGSRDKTIKLWNTLGVCKYTVQD--ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVW 200
Query: 120 WAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQS 179
+ H GH+ + ++ + G S D +W +
Sbjct: 201 NLANCKLKTNHI---------GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN------ 245
Query: 180 GDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKML 239
+HL T+ G I ++ +S A S++ + ++D +++
Sbjct: 246 -----EGKHLYTLDG--GDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVI 298
Query: 240 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
KA S+ WS + L A +D+ ++++W++
Sbjct: 299 STSSKAEPPQCTSLAWSADGQTLFAGYTDN-LVRVWQV 335
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 95/209 (45%), Gaps = 27/209 (12%)
Query: 74 WEVMPGNEFECVSVLQGHAQDVKMVQWHPTM-DVLFSCSYDNTIKVWWAEDTDSDNWHCV 132
++ M + L+GH V + P D++ S S D TI + W D N+
Sbjct: 20 FQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTI-IMWKLTRDETNYGIP 78
Query: 133 QTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTI 192
Q + GHS + + ++ G +S S D T+++W D+T G + R +
Sbjct: 79 Q---RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW--DLTT-----GTTTRRFVG-- 126
Query: 193 SGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVN 251
H + + SV +S + I SG+ D +++ + + + Y + ++++H V+
Sbjct: 127 ---HTKDVLSVAFSSDNRQIVSGSRDKTIKLW-----NTLGVCKYTV---QDESHSEWVS 175
Query: 252 SVQWSPGERR-LLASASDDGMIKIWELAN 279
V++SP ++ S D ++K+W LAN
Sbjct: 176 CVRFSPNSSNPIIVSCGWDKLVKVWNLAN 204
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 12/133 (9%)
Query: 41 ATLEGHENEVKSVSWNASGT-LLATCGRDKSVWIWEVMPGNEFECVS--VLQGHAQDVKM 97
TL+GH V ++ ++ + RDK++ +W++ + L+GH+ V
Sbjct: 32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSD 91
Query: 98 VQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK 157
V S S+D T+++W D + T + GH+ + +++F++ +
Sbjct: 92 VVISSDGQFALSGSWDGTLRLW---DLTTG------TTTRRFVGHTKDVLSVAFSSDNRQ 142
Query: 158 LVSCSDDLTIKIW 170
+VS S D TIK+W
Sbjct: 143 IVSGSRDKTIKLW 155
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/278 (19%), Positives = 113/278 (40%), Gaps = 29/278 (10%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H+ V S G+ + S+D T +W+ G GH +V SV++++
Sbjct: 62 HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG--TTTRRFVGHTKDVLSVAFSSDNRQ 119
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP--TMDVLFSCSYDNTIKVW 119
+ + RDK++ +W + ++ + H++ V V++ P + ++ SC +D +KVW
Sbjct: 120 IVSGSRDKTIKLWNTLGVCKYTVQD--ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVW 177
Query: 120 WAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQS 179
+ H GH+ + ++ + G S D +W +
Sbjct: 178 NLANCKLKTNHI---------GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN------ 222
Query: 180 GDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKML 239
+HL T+ G I ++ +S A S++ + ++D +++
Sbjct: 223 -----EGKHLYTLDG--GDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVI 275
Query: 240 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
KA S+ WS + L A +D+ ++++W++
Sbjct: 276 STSSKAEPPQCTSLAWSADGQTLFAGYTDN-LVRVWQV 312
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 89/195 (45%), Gaps = 27/195 (13%)
Query: 88 LQGHAQDVKMVQWHPTM-DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTI 146
L+GH V + P D++ S S D TI + W D N+ Q + GHS +
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTI-IMWKLTRDETNYGIPQ---RALRGHSHFV 66
Query: 147 WALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS 206
+ ++ G +S S D T+++W D+T + + H + + SV +S
Sbjct: 67 SDVVISSDGQFALSGSWDGTLRLW--DLTTGTTTRRFVG----------HTKDVLSVAFS 114
Query: 207 REGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERR-LLA 264
+ I SG+ D +++ + + + Y + ++++H V+ V++SP ++
Sbjct: 115 SDNRQIVSGSRDKTIKLW-----NTLGVCKYTV---QDESHSEWVSCVRFSPNSSNPIIV 166
Query: 265 SASDDGMIKIWELAN 279
S D ++K+W LAN
Sbjct: 167 SCGWDKLVKVWNLAN 181
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 12/133 (9%)
Query: 41 ATLEGHENEVKSVSWNASGT-LLATCGRDKSVWIWEVMPGNEFECVS--VLQGHAQDVKM 97
TL+GH V ++ ++ + RDK++ +W++ + L+GH+ V
Sbjct: 9 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSD 68
Query: 98 VQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK 157
V S S+D T+++W D + T + GH+ + +++F++ +
Sbjct: 69 VVISSDGQFALSGSWDGTLRLW---DLTTG------TTTRRFVGHTKDVLSVAFSSDNRQ 119
Query: 158 LVSCSDDLTIKIW 170
+VS S D TIK+W
Sbjct: 120 IVSGSRDKTIKLW 132
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 38 ECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVL 88
E ++ + H EV SVSWN +GT+L++ G D V +W+ NEF+C SV+
Sbjct: 297 ELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCXSVI 347
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/252 (21%), Positives = 110/252 (43%), Gaps = 24/252 (9%)
Query: 45 GHENEVKSVSWNASGTLLATCGRDKSVWIWEV-MPGNEFECVSVLQGHAQDVKMVQWHPT 103
GH++ V V ++ G +ATC D+ + ++++ + +E + H + + W
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 104 M--DVLFSCSYDNTIKVWWAEDTDSD-----NWHCVQTISESNNGHSSTIWALSFNAKGD 156
++ S SYD T+K+ W ED D + W+ + T+++S S +A + G
Sbjct: 69 EYGRIIASASYDKTVKL-WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAH--LGL 125
Query: 157 KLVSCSDDLTIKIWGA-DITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGA 215
KL +D ++++ A + + ++S + + L H ++ F + W
Sbjct: 126 KLACLGNDGILRLYDALEPSDLRSWTLTSEXKVLSIPPANHLQSDFCLSWCPSRFSPEKL 185
Query: 216 ADDSVQ---FFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERR---LLASASDD 269
A +++ + KD + + K H + S+ W+P R L+A+ D
Sbjct: 186 AVSALEQAIIYQRGKDGKL------HVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKD 239
Query: 270 GMIKIWELANTL 281
G I+I+++ L
Sbjct: 240 GRIRIFKITEKL 251
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 78/181 (43%), Gaps = 21/181 (11%)
Query: 2 HTRTVRSCAWSPS---GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS 58
H ++ +W PS + LA ++ + G A L GH++ ++S+SW S
Sbjct: 166 HLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPS 225
Query: 59 ----GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSC---S 111
L+AT +D + I+++ E +S L + + DV S
Sbjct: 226 IGRWYQLIATGCKDGRIRIFKIT-----EKLSPLASEESLTNSNXFDNSADVDXDAQGRS 280
Query: 112 YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWG 171
NT E + + V+ +SE ++ H+ +W++S+N G L S DD +++W
Sbjct: 281 DSNT-----EEKAELQSNLQVELLSEHDD-HNGEVWSVSWNLTGTILSSAGDDGKVRLWK 334
Query: 172 A 172
A
Sbjct: 335 A 335
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 22/147 (14%)
Query: 139 NNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWG--ADITRMQSGDGYASWRHLCTISGYH 196
++GH + + ++ G + +CS D IK++ D + + D SWR H
Sbjct: 7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSD---SWR-------AH 56
Query: 197 DRTIFSVHWSRE---GIIASGAADDSVQFFVESKD-DLIDGPSYKML--LKKEKAHDMDV 250
D +I ++ W+ IIAS + D +V+ + E D + G + L L K +
Sbjct: 57 DSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKG---SL 113
Query: 251 NSVQWSPGERRL-LASASDDGMIKIWE 276
SV+++P L LA +DG++++++
Sbjct: 114 YSVKFAPAHLGLKLACLGNDGILRLYD 140
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Query: 2 HTRTVRSCAW-SPS-GKLLATASFDATTCIWEDVGGDYEC-------VATLEGHENEVKS 52
H ++ + W SP G+++A+AS+D T +WE+ EC + TL + + S
Sbjct: 56 HDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYS 115
Query: 53 VSWNAS--GTLLATCGRDKSVWIWEVMPGNEFE 83
V + + G LA G D + +++ + ++
Sbjct: 116 VKFAPAHLGLKLACLGNDGILRLYDALEPSDLR 148
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 13/142 (9%)
Query: 2 HTRTVRSCAWSPS----GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA 57
H +RS +W+PS +L+AT D I++ E ++ L E+ S ++
Sbjct: 213 HKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKIT----EKLSPLASEESLTNSNXFDN 268
Query: 58 SGTLLATC-GRDKS--VWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN 114
S + GR S E+ + E +S H +V V W+ T +L S D
Sbjct: 269 SADVDXDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDG 328
Query: 115 TIKVWWAEDTDSDNWHCVQTIS 136
+++W A T S+ + C I+
Sbjct: 329 KVRLWKA--TYSNEFKCXSVIT 348
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 88/215 (40%), Gaps = 25/215 (11%)
Query: 6 VRSCAWSPSGKLLATASFDATTCIW--EDVGGDYECVATLEGHENEVKSVSWNASGTLLA 63
V +CA++PSG +A D I+ + G+ L GH + + ++
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 159
Query: 64 TCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAED 123
+ G D + +W++ + + GH DV + P + S + D + K+W
Sbjct: 160 SSG-DTTCALWDI---ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW---- 211
Query: 124 TDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGY 183
D C QT + GH S I A+ F G+ + SDD T +++ +++
Sbjct: 212 -DVREGMCRQTFT----GHESDINAICFFPNGNAFATGSDDATCRLFD-----LRADQEL 261
Query: 184 ASWRHLCTISGYHDRTIFSVHWSREGIIASGAADD 218
++ H I G I SV +S+ G + DD
Sbjct: 262 MTYSHDNIICG-----ITSVSFSKSGRLLLAGYDD 291
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 55/127 (43%), Gaps = 10/127 (7%)
Query: 46 HENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD 105
H +V S+S L + D S +W+V G C GH D+ + + P +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG---MCRQTFTGHESDINAICFFPNGN 239
Query: 106 VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDL 165
+ S D T +++ D +D + ++ S++ I ++SF+ G L++ DD
Sbjct: 240 AFATGSDDATCRLF---DLRADQ----ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF 292
Query: 166 TIKIWGA 172
+W A
Sbjct: 293 NCNVWDA 299
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HT V S + +P +L + + DA+ +W+ G C T GHE+++ ++ + +G
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG--MCRQTFTGHESDINAICFFPNGNA 240
Query: 62 LATCGRDKSVWIWEVMPGNEF 82
AT D + ++++ E
Sbjct: 241 FATGSDDATCRLFDLRADQEL 261
Score = 33.9 bits (76), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 43/237 (18%), Positives = 95/237 (40%), Gaps = 32/237 (13%)
Query: 42 TLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWH 101
TL GH ++ ++ W LL + +D + IW+ N+ + + + V +
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL---RSSWVMTCAYA 106
Query: 102 PTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161
P+ + + DN ++ + + + +S GH+ + F +++V+
Sbjct: 107 PSGNYVACGGLDNICSIYNLKTREGN-----VRVSRELAGHTGYLSCCRF-LDDNQIVTS 160
Query: 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSV 220
S D T +W + + + H + S+ + + + SGA D S
Sbjct: 161 SGDTTCALWDIETGQQTT------------TFTGHTGDVMSLSLAPDTRLFVSGACDASA 208
Query: 221 QFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
+ + D+ +G M + H+ D+N++ + P A+ SDD ++++L
Sbjct: 209 KLW-----DVREG----MCRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDL 255
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 88/215 (40%), Gaps = 25/215 (11%)
Query: 6 VRSCAWSPSGKLLATASFDATTCIW--EDVGGDYECVATLEGHENEVKSVSWNASGTLLA 63
V +CA++PSG +A D I+ + G+ L GH + + ++
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 159
Query: 64 TCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAED 123
+ G D + +W++ + + GH DV + P + S + D + K+W
Sbjct: 160 SSG-DTTCALWDI---ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW---- 211
Query: 124 TDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGY 183
D C QT + GH S I A+ F G+ + SDD T +++ +++
Sbjct: 212 -DVREGMCRQTFT----GHESDINAICFFPNGNAFATGSDDATCRLFD-----LRADQEL 261
Query: 184 ASWRHLCTISGYHDRTIFSVHWSREGIIASGAADD 218
++ H I G I SV +S+ G + DD
Sbjct: 262 MTYSHDNIICG-----ITSVSFSKSGRLLLAGYDD 291
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 55/127 (43%), Gaps = 10/127 (7%)
Query: 46 HENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD 105
H +V S+S L + D S +W+V G C GH D+ + + P +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG---MCRQTFTGHESDINAICFFPNGN 239
Query: 106 VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDL 165
+ S D T +++ D +D + ++ S++ I ++SF+ G L++ DD
Sbjct: 240 AFATGSDDATCRLF---DLRADQ----ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF 292
Query: 166 TIKIWGA 172
+W A
Sbjct: 293 NCNVWDA 299
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HT V S + +P +L + + DA+ +W+ G C T GHE+++ ++ + +G
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG--MCRQTFTGHESDINAICFFPNGNA 240
Query: 62 LATCGRDKSVWIWEVMPGNEF 82
AT D + ++++ E
Sbjct: 241 FATGSDDATCRLFDLRADQEL 261
Score = 33.9 bits (76), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 43/237 (18%), Positives = 95/237 (40%), Gaps = 32/237 (13%)
Query: 42 TLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWH 101
TL GH ++ ++ W LL + +D + IW+ N+ + + + V +
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL---RSSWVMTCAYA 106
Query: 102 PTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161
P+ + + DN ++ + + + +S GH+ + F +++V+
Sbjct: 107 PSGNYVACGGLDNICSIYNLKTREGN-----VRVSRELAGHTGYLSCCRF-LDDNQIVTS 160
Query: 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSV 220
S D T +W + + + H + S+ + + + SGA D S
Sbjct: 161 SGDTTCALWDIETGQQTT------------TFTGHTGDVMSLSLAPDTRLFVSGACDASA 208
Query: 221 QFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
+ + D+ +G M + H+ D+N++ + P A+ SDD ++++L
Sbjct: 209 KLW-----DVREG----MCRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDL 255
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 88/215 (40%), Gaps = 25/215 (11%)
Query: 6 VRSCAWSPSGKLLATASFDATTCIW--EDVGGDYECVATLEGHENEVKSVSWNASGTLLA 63
V +CA++PSG +A D I+ + G+ L GH + + ++
Sbjct: 111 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 170
Query: 64 TCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAED 123
+ G D + +W++ + + GH DV + P + S + D + K+W
Sbjct: 171 SSG-DTTCALWDI---ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW---- 222
Query: 124 TDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGY 183
D C QT + GH S I A+ F G+ + SDD T +++ +++
Sbjct: 223 -DVREGMCRQTFT----GHESDINAICFFPNGNAFATGSDDATCRLFD-----LRADQEL 272
Query: 184 ASWRHLCTISGYHDRTIFSVHWSREGIIASGAADD 218
++ H I G I SV +S+ G + DD
Sbjct: 273 MTYSHDNIICG-----ITSVSFSKSGRLLLAGYDD 302
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 55/127 (43%), Gaps = 10/127 (7%)
Query: 46 HENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD 105
H +V S+S L + D S +W+V G C GH D+ + + P +
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG---MCRQTFTGHESDINAICFFPNGN 250
Query: 106 VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDL 165
+ S D T +++ D +D + ++ S++ I ++SF+ G L++ DD
Sbjct: 251 AFATGSDDATCRLF---DLRADQ----ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF 303
Query: 166 TIKIWGA 172
+W A
Sbjct: 304 NCNVWDA 310
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HT V S + +P +L + + DA+ +W+ G C T GHE+++ ++ + +G
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG--MCRQTFTGHESDINAICFFPNGNA 251
Query: 62 LATCGRDKSVWIWEVMPGNEF 82
AT D + ++++ E
Sbjct: 252 FATGSDDATCRLFDLRADQEL 272
Score = 34.3 bits (77), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 43/237 (18%), Positives = 95/237 (40%), Gaps = 32/237 (13%)
Query: 42 TLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWH 101
TL GH ++ ++ W LL + +D + IW+ N+ + + + V +
Sbjct: 61 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL---RSSWVMTCAYA 117
Query: 102 PTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161
P+ + + DN ++ + + + +S GH+ + F +++V+
Sbjct: 118 PSGNYVACGGLDNICSIYNLKTREGN-----VRVSRELAGHTGYLSCCRF-LDDNQIVTS 171
Query: 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSV 220
S D T +W + + + H + S+ + + + SGA D S
Sbjct: 172 SGDTTCALWDIETGQQTT------------TFTGHTGDVMSLSLAPDTRLFVSGACDASA 219
Query: 221 QFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
+ + D+ +G M + H+ D+N++ + P A+ SDD ++++L
Sbjct: 220 KLW-----DVREG----MCRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDL 266
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 88/215 (40%), Gaps = 25/215 (11%)
Query: 6 VRSCAWSPSGKLLATASFDATTCIW--EDVGGDYECVATLEGHENEVKSVSWNASGTLLA 63
V +CA++PSG +A D I+ + G+ L GH + + ++
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 159
Query: 64 TCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAED 123
+ G D + +W++ + + GH DV + P + S + D + K+W
Sbjct: 160 SSG-DTTCALWDI---ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW---- 211
Query: 124 TDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGY 183
D C QT + GH S I A+ F G+ + SDD T +++ +++
Sbjct: 212 -DVREGMCRQTFT----GHESDINAICFFPNGNAFATGSDDATCRLFD-----LRADQEL 261
Query: 184 ASWRHLCTISGYHDRTIFSVHWSREGIIASGAADD 218
++ H I G I SV +S+ G + DD
Sbjct: 262 MTYSHDNIICG-----ITSVSFSKSGRLLLAGYDD 291
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 55/127 (43%), Gaps = 10/127 (7%)
Query: 46 HENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD 105
H +V S+S L + D S +W+V G C GH D+ + + P +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG---MCRQTFTGHESDINAICFFPNGN 239
Query: 106 VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDL 165
+ S D T +++ D +D + ++ S++ I ++SF+ G L++ DD
Sbjct: 240 AFATGSDDATCRLF---DLRADQ----ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF 292
Query: 166 TIKIWGA 172
+W A
Sbjct: 293 NCNVWDA 299
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HT V S + +P +L + + DA+ +W+ G C T GHE+++ ++ + +G
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG--MCRQTFTGHESDINAICFFPNGNA 240
Query: 62 LATCGRDKSVWIWEVMPGNEF 82
AT D + ++++ E
Sbjct: 241 FATGSDDATCRLFDLRADQEL 261
Score = 34.3 bits (77), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 43/237 (18%), Positives = 95/237 (40%), Gaps = 32/237 (13%)
Query: 42 TLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWH 101
TL GH ++ ++ W LL + +D + IW+ N+ + + + V +
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL---RSSWVMTCAYA 106
Query: 102 PTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161
P+ + + DN ++ + + + +S GH+ + F +++V+
Sbjct: 107 PSGNYVACGGLDNICSIYNLKTREGN-----VRVSRELAGHTGYLSCCRF-LDDNQIVTS 160
Query: 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSV 220
S D T +W + + + H + S+ + + + SGA D S
Sbjct: 161 SGDTTCALWDIETGQQTT------------TFTGHTGDVMSLSLAPDTRLFVSGACDASA 208
Query: 221 QFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
+ + D+ +G M + H+ D+N++ + P A+ SDD ++++L
Sbjct: 209 KLW-----DVREG----MCRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDL 255
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 88/215 (40%), Gaps = 25/215 (11%)
Query: 6 VRSCAWSPSGKLLATASFDATTCIW--EDVGGDYECVATLEGHENEVKSVSWNASGTLLA 63
V +CA++PSG +A D I+ + G+ L GH + + ++
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 159
Query: 64 TCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAED 123
+ G D + +W++ + + GH DV + P + S + D + K+W
Sbjct: 160 SSG-DTTCALWDI---ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW---- 211
Query: 124 TDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGY 183
D C QT + GH S I A+ F G+ + SDD T +++ +++
Sbjct: 212 -DVREGMCRQTFT----GHESDINAICFFPNGNAFATGSDDATCRLFD-----LRADQEL 261
Query: 184 ASWRHLCTISGYHDRTIFSVHWSREGIIASGAADD 218
++ H I G I SV +S+ G + DD
Sbjct: 262 MTYSHDNIICG-----ITSVSFSKSGRLLLAGYDD 291
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 55/127 (43%), Gaps = 10/127 (7%)
Query: 46 HENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD 105
H +V S+S L + D S +W+V G C GH D+ + + P +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG---MCRQTFTGHESDINAICFFPNGN 239
Query: 106 VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDL 165
+ S D T +++ D +D + ++ S++ I ++SF+ G L++ DD
Sbjct: 240 AFATGSDDATCRLF---DLRADQ----ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF 292
Query: 166 TIKIWGA 172
+W A
Sbjct: 293 NCNVWDA 299
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HT V S + +P +L + + DA+ +W+ G C T GHE+++ ++ + +G
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG--MCRQTFTGHESDINAICFFPNGNA 240
Query: 62 LATCGRDKSVWIWEVMPGNEF 82
AT D + ++++ E
Sbjct: 241 FATGSDDATCRLFDLRADQEL 261
Score = 34.3 bits (77), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 43/237 (18%), Positives = 95/237 (40%), Gaps = 32/237 (13%)
Query: 42 TLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWH 101
TL GH ++ ++ W LL + +D + IW+ N+ + + + V +
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL---RSSWVMTCAYA 106
Query: 102 PTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161
P+ + + DN ++ + + + +S GH+ + F +++V+
Sbjct: 107 PSGNYVACGGLDNICSIYNLKTREGN-----VRVSRELAGHTGYLSCCRF-LDDNQIVTS 160
Query: 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSV 220
S D T +W + + + H + S+ + + + SGA D S
Sbjct: 161 SGDTTCALWDIETGQQTT------------TFTGHTGDVMSLSLAPDTRLFVSGACDASA 208
Query: 221 QFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
+ + D+ +G M + H+ D+N++ + P A+ SDD ++++L
Sbjct: 209 KLW-----DVREG----MCRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDL 255
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 14/100 (14%)
Query: 88 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 147
L GH + + V+++ D+LFSCS D++ VW+ S N + T+ +GH+ TIW
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWY-----SLNGERLGTL----DGHTGTIW 78
Query: 148 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWR 187
++ + V+ S D +IK+W + +G A+W+
Sbjct: 79 SIDVDCFTKYCVTGSADYSIKLW-----DVSNGQCVATWK 113
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 43 LEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP 102
L GHE + V +N G LL +C +D S +W + G E + L GH + +
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG---ERLGTLDGHTGTIWSIDVDC 84
Query: 103 TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQT 134
+ S D +IK+W D N CV T
Sbjct: 85 FTKYCVTGSADYSIKLW-----DVSNGQCVAT 111
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 7/116 (6%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H R + ++ G LL + S D++ +W + G E + TL+GH + S+ +
Sbjct: 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG--ERLGTLDGHTGTIWSIDVDCFTKY 88
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIK 117
T D S+ +W+V G +CV+ + VK V++ P + + DN +K
Sbjct: 89 CVTGSADYSIKLWDVSNG---QCVATWKSPVP-VKRVEFSPCGNYFLAI-LDNVMK 139
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 9 CAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD 68
WS GK + D + DV +YE V +++ HE + + ++ T T RD
Sbjct: 181 AGWSTKGKYIIAGHKDGKISKY-DVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRD 239
Query: 69 KSVWIWEV 76
+ ++ +V
Sbjct: 240 TNSFLVDV 247
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 21/167 (12%)
Query: 13 PSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVW 72
P A+ +D +W +++ T + HE+ V +S + +G +AT G+DK +
Sbjct: 182 PFAPYFASVGWDGRLKVWNT---NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLL 238
Query: 73 IWEVM----PGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDN 128
IW+++ P EF+ S + A + K+ QW + D +K++ T S
Sbjct: 239 IWDILNLTYPQREFDAGSTINQIAFNPKL-QW-------VAVGTDQGVKIFNLM-TQSKA 289
Query: 129 WHCV-----QTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 170
C T +E G + +L++NA G KL + D I+ +
Sbjct: 290 PVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTF 336
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 72/180 (40%), Gaps = 25/180 (13%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWE-DVGGDYECVATLEGHENEVKSVSWNASGT 60
H V A S ++S+D T +W+ G Y+ GH++EV SV+++
Sbjct: 75 HNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR 131
Query: 61 LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD----------VLFSC 110
+ + G ++ + +W ++ +F + H+ V V++ P M S
Sbjct: 132 QILSAGAEREIKLWNILGECKFSSAEK-ENHSDWVSCVRYSPIMKSANKVQPFAPYFASV 190
Query: 111 SYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 170
+D +KVW + N+ T H S + LS + G + + D + IW
Sbjct: 191 GWDGRLKVW------NTNFQIRYTFK----AHESNVNHLSISPNGKYIATGGKDKKLLIW 240
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 19/138 (13%)
Query: 43 LEGHENEVKSV------SWNASGTLLATCGRDKSVWIWEVMPGNEFECVSV----LQGHA 92
LEGH + V S+ N +L + RDK+V IW++ + + L GH
Sbjct: 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN 76
Query: 93 QDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN 152
V + S S+D T+++W D + T + GH S +++++F+
Sbjct: 77 HFVSDLALSQENCFAISSSWDKTLRLW---DLRTG------TTYKRFVGHQSEVYSVAFS 127
Query: 153 AKGDKLVSCSDDLTIKIW 170
+++S + IK+W
Sbjct: 128 PDNRQILSAGAEREIKLW 145
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 8/108 (7%)
Query: 17 LLATASFDATTCIW---EDVGGDYECVA--TLEGHENEVKSVSWNASGTLLATCGRDKSV 71
+L + S D T IW E+ Y + L GH + V ++ + + DK++
Sbjct: 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTL 100
Query: 72 WIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 119
+W++ G ++ GH +V V + P + S + IK+W
Sbjct: 101 RLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNRQILSAGAEREIKLW 145
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 72/179 (40%), Gaps = 17/179 (9%)
Query: 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWE-----DVGGDYECVATLEGHENEVKSVSW 55
+H V CA++P+G+ +A D+ I+ D G+ L GH+ S +
Sbjct: 106 LHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQY 165
Query: 56 NA-SGTLLATCGRDKSVWIWEVMPGNEFECVS--VLQGHAQDVKMVQWHP-TMDVLFSCS 111
T L T D++ +W+V G GH DV + + ++ S S
Sbjct: 166 VPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGS 225
Query: 112 YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 170
D T+++W + + +GH I ++ F G + + SDD T +++
Sbjct: 226 CDTTVRLW--------DLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLF 276
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/244 (20%), Positives = 101/244 (41%), Gaps = 22/244 (9%)
Query: 36 DYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDV 95
D C TL+GH +V S+ W + + +D + +W + + + + H V
Sbjct: 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL---HCPWV 111
Query: 96 KMVQWHPTMDVLFSCSYDNTIKVW-WAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK 154
+ P + D+ ++ + D D V + + G++S+ + +
Sbjct: 112 MECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVP--DQ 169
Query: 155 GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGY-HDRTIFSVHWSREGIIAS 213
+L++ S D T +W D+T Q + S SG+ D S++ + S
Sbjct: 170 ETRLITGSGDQTCVLW--DVTTGQRISIFGSE----FPSGHTADVLSLSINSLNANMFIS 223
Query: 214 GAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIK 273
G+ D +V+ + D ++ H+ D+NSV++ P +R + SDDG +
Sbjct: 224 GSCDTTVRLW--------DLRITSRAVRTYHGHEGDINSVKFFPDGQR-FGTGSDDGTCR 274
Query: 274 IWEL 277
++++
Sbjct: 275 LFDM 278
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 117/287 (40%), Gaps = 37/287 (12%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H+ V S W+P + +AS D +W + L H V ++ +G
Sbjct: 65 HSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL--HCPWVMECAFAPNGQS 122
Query: 62 LATCGRDKSVWIWEVMP-----GNEFECVSVLQGHAQDVKMVQWHPTMDV-LFSCSYDNT 115
+A G D + I+ + GN VL GH Q+ P + L + S D T
Sbjct: 123 VACGGLDSACSIFNLSSQADRDGN-MPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQT 181
Query: 116 IKVWWAEDTDSDNWHCVQTI-SESNNGHSSTIWALSFNA-KGDKLVSCSDDLTIKIWGAD 173
+W D + SE +GH++ + +LS N+ + +S S D T+++W
Sbjct: 182 CVLW-----DVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLR 236
Query: 174 ITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLID 232
IT R + T G H+ I SV + +G +G+ D + + F D+
Sbjct: 237 ITS----------RAVRTYHG-HEGDINSVKFFPDGQRFGTGSDDGTCRLF-----DMRT 280
Query: 233 GPSYKMLLKKEKAHDMD---VNSVQWSPGERRLLASASDDGMIKIWE 276
G ++ ++ +D + V SV +S R L A S +G +W+
Sbjct: 281 GHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS-NGDCYVWD 326
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 65/163 (39%), Gaps = 10/163 (6%)
Query: 12 SPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSV 71
S + + + S D T +W D+ V T GHE ++ SV + G T D +
Sbjct: 215 SLNANMFISGSCDTTVRLW-DLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTC 273
Query: 72 WIWEVMPGNEFECVSVLQGHAQD----VKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSD 127
++++ G++ + + + V V + + +LF+ + VW D+
Sbjct: 274 RLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVW-----DTL 328
Query: 128 NWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 170
V + N H I L ++ G L + S D +KIW
Sbjct: 329 LAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 70/177 (39%), Gaps = 6/177 (3%)
Query: 10 AWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDK 69
AW+ +A + I+E G + V L+ H +V V W + TCG D+
Sbjct: 15 AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDR 74
Query: 70 SVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNW 129
+ ++W + G ++ V+ + + V+W P S I + + E ++D W
Sbjct: 75 NAYVW-TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQ-ENDWW 132
Query: 130 HCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASW 186
C ST+ +L ++ L + S D +I+ A I ++ W
Sbjct: 133 VCKHI----KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 185
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 70/177 (39%), Gaps = 6/177 (3%)
Query: 10 AWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDK 69
AW+ +A + I+E G + V L+ H +V + W + TCG D+
Sbjct: 15 AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVTCGTDR 74
Query: 70 SVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNW 129
+ ++W + G ++ V+ + + V+W P S I + + E ++D W
Sbjct: 75 NAYVW-TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQ-ENDWW 132
Query: 130 HCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASW 186
C ST+ +L ++ L + S D +I+ A I ++ W
Sbjct: 133 VCKHI----KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 185
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 98/224 (43%), Gaps = 40/224 (17%)
Query: 9 CAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEV---KSVSWNASGTLLATC 65
C+ S ++ + S+D T +W++ V L+ H V K VS++ + L A+
Sbjct: 108 CSLSFQDGVVISGSWDKTAKVWKE----GSLVYNLQAHNASVWDAKVVSFSENKFLTASA 163
Query: 66 GRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD--VLFSCSYDNTIKVWWAED 123
DK++ +W+ N+ + + G DV V+ +D SCS D IK+
Sbjct: 164 --DKTIKLWQ----ND-KVIKTFSGIHNDV--VRHLAVVDDGHFISCSNDGLIKLVDXHT 214
Query: 124 TDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGY 183
D + + GH S ++ + GD +VSC +D T++IW +
Sbjct: 215 GD---------VLRTYEGHESFVYCIKLLPNGD-IVSCGEDRTVRIWSKE---------N 255
Query: 184 ASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESK 227
S + + T+ +I+SV G I G++D+ V+ F + K
Sbjct: 256 GSLKQVITLPAI---SIWSVDCXSNGDIIVGSSDNLVRIFSQEK 296
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/182 (20%), Positives = 79/182 (43%), Gaps = 25/182 (13%)
Query: 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGD-YECVATLEGHENEVKSVSWNASG 59
H + S W+ G + + + T +W + G + E + + + + + G
Sbjct: 147 FHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDG 206
Query: 60 TL-----------LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLF 108
+L G +++++++ E L GH + +++++ T +L
Sbjct: 207 SLGVDVEWVDDDKFVIPGPKGAIFVYQIT---EKTPTGKLIGHHGPISVLEFNDTNKLLL 263
Query: 109 SCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIK 168
S S D T+++W + +S N C GHS +I + S+ DK++SCS D +++
Sbjct: 264 SASDDGTLRIWHGGNGNSQN--CFY-------GHSQSIVSASW-VGDDKVISCSMDGSVR 313
Query: 169 IW 170
+W
Sbjct: 314 LW 315
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 87/239 (36%), Gaps = 33/239 (13%)
Query: 3 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLL 62
T V AWS G + T + +W G + L H + SV WN GT +
Sbjct: 108 TNQVTCLAWSHDGNSIVTGVENGELRLWNKTGA---LLNVLNFHRAPIVSVKWNKDGTHI 164
Query: 63 ATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAE 122
+ + +W V+ G + + + + + H L + V W +
Sbjct: 165 ISMDVENVTILWNVISGTVMQHFELKETGGSSIN-AENHSGDGSL-------GVDVEWVD 216
Query: 123 D-----TDSDNWHCVQTISESNN-----GHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA 172
D V I+E GH I L FN L+S SDD T++IW
Sbjct: 217 DDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIW-- 274
Query: 173 DITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLI 231
G+G + C H ++I S W + + S + D SV+ + ++ L+
Sbjct: 275 -----HGGNGNS---QNCFYG--HSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLL 323
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 116/282 (41%), Gaps = 50/282 (17%)
Query: 6 VRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATC 65
V S WS G L+ + I+ DV + + T+ GH+ V +SWN +L++
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIY-DVESQTK-LRTMAGHQARVGCLSWNRH--VLSSG 192
Query: 66 GRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTD 125
R ++ +V N + LQGH+ +V + W L S DN +++W A +
Sbjct: 193 SRSGAIHHHDVRIAN--HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS- 249
Query: 126 SDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD---DLTIKIW----GADITRMQ 178
+ +++N H++ + A+++ L++ D I W GA + +
Sbjct: 250 ------IPKFTKTN--HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD 301
Query: 179 SGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDL---IDGPS 235
+G S I H + I S H G D+++ + S L +D P
Sbjct: 302 AGSQVTSL-----IWSPHSKEIMSTH---------GFPDNNLSIWSYSSSGLTKQVDIP- 346
Query: 236 YKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
AHD V SP + R+L++A+ D +K W +
Sbjct: 347 ---------AHDTRVLYSALSP-DGRILSTAASDENLKFWRV 378
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 44/123 (35%), Gaps = 11/123 (8%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA-SGT 60
H+ V AW G LA+ D IW+ + T H VK+V+W
Sbjct: 216 HSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKT--NHNAAVKAVAWCPWQSN 273
Query: 61 LLATCG--RDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS--YDNTI 116
LLAT G DK + W G V V + W P + S DN +
Sbjct: 274 LLATGGGTMDKQIHFWNAATGARVNTVDA----GSQVTSLIWSPHSKEIMSTHGFPDNNL 329
Query: 117 KVW 119
+W
Sbjct: 330 SIW 332
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 89 QGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWA 148
Q H ++ +++ P+ + L S S D +K+W +D + GH +T+
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI---------GHRATVTD 186
Query: 149 LSFNAKGDKLVSCSDDLTIKIW 170
++ +G ++S S D TI++W
Sbjct: 187 IAIIDRGRNVLSASLDGTIRLW 208
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 137 ESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 170
E + H S I L F G+ L+S S D+ +KIW
Sbjct: 133 EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIW 166
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H + + PSG+ L ++S D IW G TL GH V ++ G
Sbjct: 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP--RTLIGHRATVTDIAIIDRGRN 195
Query: 62 LATCGRDKSVWIWEVMPG 79
+ + D ++ +WE G
Sbjct: 196 VLSASLDGTIRLWECGTG 213
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 89 QGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWA 148
Q H ++ +++ P+ + L S S D +K+W +D + GH +T+
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI---------GHRATVTD 183
Query: 149 LSFNAKGDKLVSCSDDLTIKIW 170
++ +G ++S S D TI++W
Sbjct: 184 IAIIDRGRNVLSASLDGTIRLW 205
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 137 ESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 170
E + H S I L F G+ L+S S D+ +KIW
Sbjct: 130 EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIW 163
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H + + PSG+ L ++S D IW G TL GH V ++ G
Sbjct: 135 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP--RTLIGHRATVTDIAIIDRGRN 192
Query: 62 LATCGRDKSVWIWEVMPG 79
+ + D ++ +WE G
Sbjct: 193 VLSASLDGTIRLWECGTG 210
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 40/97 (41%)
Query: 29 IWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVL 88
++E G ++ T H+ V V W + TC +D++ +++E P ++ VL
Sbjct: 37 LYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVL 96
Query: 89 QGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTD 125
+ V+W P D S I V + E +
Sbjct: 97 LRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEN 133
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 82/192 (42%), Gaps = 19/192 (9%)
Query: 1 MHTRTVRSCAWSPSGK-LLATASFDATTCIWE--DVGGDYECVATLEGHENEVKSVSWNA 57
MH + V A +P LATAS D T IW+ V G + +L H + V + ++
Sbjct: 249 MHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSP 307
Query: 58 SGTLLATCGRDKSVWIWEVMPGNEFEC----VSVLQGHAQDVKMVQ--WHPTMDVLFSCS 111
G L T + + ++ ++++C + H Q + ++ WHP +++
Sbjct: 308 DGARLLTTDQKSEIRVYS---ASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGR 364
Query: 112 Y-DNTIK---VWWAEDTDSDNWHCVQTISESNNGHSSTIWALS-FNAKGDKLVSCSDDLT 166
Y D K + D + + + + + + SS I +L+ FN GD L S +
Sbjct: 365 YPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLAS-AMGYH 423
Query: 167 IKIWGADITRMQ 178
I IW + R +
Sbjct: 424 ILIWSQEEARTR 435
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 75/174 (43%), Gaps = 18/174 (10%)
Query: 1 MHTRTVRSCAWSPSGK-LLATASFDATTCIWE--DVGGDYECVATLEGHENEVKSVSWNA 57
MH + V A +P LATAS D T IW+ V G + +L H + V + ++
Sbjct: 248 MHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSP 306
Query: 58 SGTLLATCGRDKSVWIWEVMPGNEFEC----VSVLQGHAQDVKMVQ--WHPTMDVLFSCS 111
G L T + + ++ ++++C + H Q + ++ WHP +++
Sbjct: 307 DGARLLTTDQKSEIRVYS---ASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGR 363
Query: 112 Y-DNTIK---VWWAEDTDSDNWHCVQTISESNNGHSSTIWALS-FNAKGDKLVS 160
Y D K + D + + + + + + SS I +L+ FN GD L S
Sbjct: 364 YPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLAS 417
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 35.0 bits (79), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 75/174 (43%), Gaps = 18/174 (10%)
Query: 1 MHTRTVRSCAWSPSGK-LLATASFDATTCIWE--DVGGDYECVATLEGHENEVKSVSWNA 57
MH + V A +P LATAS D T IW+ V G + +L H + V + ++
Sbjct: 248 MHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSP 306
Query: 58 SGTLLATCGRDKSVWIWEVMPGNEFEC----VSVLQGHAQDVKMVQ--WHPTMDVLFSCS 111
G L T + + ++ ++++C + H Q + ++ WHP +++
Sbjct: 307 DGARLLTTDQKSEIRVYS---ASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGR 363
Query: 112 Y-DNTIK---VWWAEDTDSDNWHCVQTISESNNGHSSTIWALS-FNAKGDKLVS 160
Y D K + D + + + + + + SS I +L+ FN GD L S
Sbjct: 364 YPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLAS 417
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 35.0 bits (79), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 46 HENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD 105
H++ VK++S + GT + G+D SV +W++ ++ + H+ +V V P D
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDL---SQKAVLKSYNAHSSEVNCVAACPGKD 194
Query: 106 VLF-SCSYDNTIKVW 119
+F SC D I +W
Sbjct: 195 TIFLSCGEDGRILLW 209
Score = 34.3 bits (77), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 235 SYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276
S K +LK AH +VN V PG+ + S +DG I +W+
Sbjct: 169 SQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWD 210
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 56/140 (40%), Gaps = 11/140 (7%)
Query: 40 VATLEGHENEVKSVSW-NASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMV 98
+ + H +EV V+ T+ +CG D + +W+ + V
Sbjct: 174 LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTS-V 232
Query: 99 QWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK- 157
WHP D F+C D T V + D+ ++++ HS I L+++
Sbjct: 233 TWHPEKDDTFACG-DETGNVSLVNIKNPDS-------AQTSAVHSQNITGLAYSYHSSPF 284
Query: 158 LVSCSDDLTIKIWGADITRM 177
L S S+D T+ + AD + +
Sbjct: 285 LASISEDCTVAVLDADFSEV 304
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 46 HENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD 105
H++ V +VS +SGT + +D + +W++ + +S + HA V V P D
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA---QQVVLSSYRAHAAQVTCVAASPHKD 182
Query: 106 -VLFSCSYDNTIKVW 119
V SCS DN I +W
Sbjct: 183 SVFLSCSEDNRILLW 197
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 58/145 (40%), Gaps = 18/145 (12%)
Query: 133 QTISESNNGHSSTIWALSFNAKGDKL-VSCSDDLTIKIWGADITRMQSGDGYASWRHLCT 191
Q + S H++ + ++ + D + +SCS+D I +W + S G C+
Sbjct: 159 QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIG-------CS 211
Query: 192 ISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVN 251
GY T + H + + G + +V L+D S +L H V
Sbjct: 212 APGYLP-TSLAWHPQQSEVFVFGDENGTV--------SLVDTKSTSCVLSS-AVHSQCVT 261
Query: 252 SVQWSPGERRLLASASDDGMIKIWE 276
+ +SP LAS S+D + + +
Sbjct: 262 GLVFSPHSVPFLASLSEDCSLAVLD 286
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 19/111 (17%)
Query: 2 HTRTVRSCAWSPSGKLLATA----SFDATTCIWEDVGGDYECVATLEGHENE-------- 49
++ ++RS +SP G LLA A SF T ++E G+ ++ H ++
Sbjct: 232 NSNSIRSVKFSPQGSLLAIAHDSNSFGCIT-LYETEFGERIGSLSVPTHSSQASLGEFAH 290
Query: 50 ---VKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKM 97
V S+S+N SG L + G D + W+V E ++ L H D+++
Sbjct: 291 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK---ERITTLNMHCDDIEI 338
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 34.7 bits (78), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 19/111 (17%)
Query: 2 HTRTVRSCAWSPSGKLLATA----SFDATTCIWEDVGGDYECVATLEGHENE-------- 49
++ ++RS +SP G LLA A SF T ++E G+ ++ H ++
Sbjct: 242 NSNSIRSVKFSPQGSLLAIAHDSNSFGCIT-LYETEFGERIGSLSVPTHSSQASLGEFAH 300
Query: 50 ---VKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKM 97
V S+S+N SG L + G D + W+V E ++ L H D+++
Sbjct: 301 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK---ERITTLNMHCDDIEI 348
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 33.9 bits (76), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 61 LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT-MDVLFSCSYDNTIKVW 119
++AT G+D + IW+V G VS+L+ H ++ V +HP+ + LF+CS D ++ W
Sbjct: 251 VVATGGQDGMLSIWDVRQGT--MPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHW 308
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 17 LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT-LLATCGRDKSVWIWE 75
++AT D IW DV V+ L+ HE E+ V ++ S L TC D S+W W+
Sbjct: 251 VVATGGQDGMLSIW-DVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWD 309
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 47/235 (20%), Positives = 108/235 (45%), Gaps = 22/235 (9%)
Query: 53 VSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY 112
VS SGT+ A D S+ +W ++ + + ++ LQ ++ + W ++
Sbjct: 29 VSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSK-FNDLDWSHNNKIIAGALD 87
Query: 113 DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK-LVSCSDDLTIKIWG 171
+ +++++ + + + + +++ +N HSS++ + FNAK D L S ++ I IW
Sbjct: 88 NGSLELYSTNEAN----NAINSMARFSN-HSSSVKTVKFNAKQDNVLASGGNNGEIFIW- 141
Query: 172 ADITR-MQSGDGYASWRHLCTISGYHDRTIFSVHWSRE--GIIASGAADDSVQFF-VESK 227
D+ + +S Y ++S + + S+ W++ + AS + + + +++K
Sbjct: 142 -DMNKCTESPSNYTPLTPGQSMSSVDE--VISLAWNQSLAHVFASAGSSNFASIWDLKAK 198
Query: 228 DDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS---DDGMIKIWELAN 279
++I + ++ V+W P +A+A+ +D I IW+L N
Sbjct: 199 KEVI----HLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN 249
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 86/200 (43%), Gaps = 43/200 (21%)
Query: 1 MHTRTVRSCAWSPSGK-LLATASFDATTCIWE--DVGGDYECVATLEGHENEVKSVSWNA 57
+H V ++P L+AT+S DAT +W+ ++ +A + HE V + +N
Sbjct: 201 LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP-HEKPVNAAYFNP 259
Query: 58 --SGTLLATCGRDK----SVWIWE------VMPGNEFECVSVLQGHAQDVKMVQWHPTMD 105
S LL T R++ S + W + P +F+ ++ ++ WHP D
Sbjct: 260 TDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKA--------TWHPMYD 311
Query: 106 VLFSCSYDN---------TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALS-FNAKG 155
++ + Y + TI ++ D+++ V + + N ++ I +L+ F+ G
Sbjct: 312 LIVAGRYPDDQLLLNDKRTIDIY-----DANSGGLVHQLRDPN---AAGIISLNKFSPTG 363
Query: 156 DKLVSCSDDLTIKIWGADIT 175
D L S I IW + T
Sbjct: 364 DVLASGM-GFNILIWNREDT 382
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 242 KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
KEK H V +++P L+A++S D +K+W+L N
Sbjct: 198 KEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRN 235
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 86/200 (43%), Gaps = 43/200 (21%)
Query: 1 MHTRTVRSCAWSPSGK-LLATASFDATTCIWE--DVGGDYECVATLEGHENEVKSVSWNA 57
+H V ++P L+AT+S DAT +W+ ++ +A + HE V + +N
Sbjct: 202 LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP-HEKPVNAAYFNP 260
Query: 58 --SGTLLATCGRDK----SVWIWE------VMPGNEFECVSVLQGHAQDVKMVQWHPTMD 105
S LL T R++ S + W + P +F+ ++ ++ WHP D
Sbjct: 261 TDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKA--------TWHPMYD 312
Query: 106 VLFSCSYDN---------TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALS-FNAKG 155
++ + Y + TI ++ D+++ V + + N ++ I +L+ F+ G
Sbjct: 313 LIVAGRYPDDQLLLNDKRTIDIY-----DANSGGLVHQLRDPN---AAGIISLNKFSPTG 364
Query: 156 DKLVSCSDDLTIKIWGADIT 175
D L S I IW + T
Sbjct: 365 DVLASGM-GFNILIWNREDT 383
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 242 KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
KEK H V +++P L+A++S D +K+W+L N
Sbjct: 199 KEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRN 236
>pdb|3GRE|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Vps15 Wd
Repeat Domain
Length = 437
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 229 DLIDGPSYKMLLKKEKAHDMD-----VNSVQWSPGERRLLASASDDGMIKIWELANTL 281
+++ P+ L K A M+ + S SPGE L + SD G+IKIW L +
Sbjct: 40 EIVRSPNMGNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEII 97
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 76/207 (36%), Gaps = 32/207 (15%)
Query: 10 AWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDK 69
A SP K+ + D +W+ + V +GH + + + GT L T G D
Sbjct: 148 AISPDSKVCFSCCSDGNIAVWDL--HNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDN 205
Query: 70 SVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDN- 128
+V W++ G + +Q H +FS Y T + W A +S N
Sbjct: 206 TVRSWDLREG----------------RQLQQHDFTSQIFSLGYCPTGE-WLAVGMESSNV 248
Query: 129 --WHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW----GADITRMQSGDG 182
H + + H S + +L F G VS D + W GA I + +
Sbjct: 249 EVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSS 308
Query: 183 YASW------RHLCTISGYHDRTIFSV 203
S +++ T SG T++ V
Sbjct: 309 VLSCDISVDDKYIVTGSGDKKATVYEV 335
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 3/114 (2%)
Query: 6 VRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATC 65
+RSC P G L +T IW+ A L +++ + + +C
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC 159
Query: 66 GRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 119
D ++ +W++ + V QGH + L++ DNT++ W
Sbjct: 160 CSDGNIAVWDL---HNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW 210
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 219 SVQFFVESKDDLIDGPSYKMLLKKEKAHDMD----VNSVQWSPGERRLLASASDDGMIKI 274
+V+FF + DD + + D + VNS+++SP + L +A DG+I
Sbjct: 219 AVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISC 277
Query: 275 WEL 277
W L
Sbjct: 278 WNL 280
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 219 SVQFFVESKDDLIDGPSYKMLLKKEKAHDMD----VNSVQWSPGERRLLASASDDGMIKI 274
+V+FF + DD + + D + VNS+++SP + L +A DG+I
Sbjct: 219 AVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISC 277
Query: 275 WEL 277
W L
Sbjct: 278 WNL 280
>pdb|2R26|A Chain A, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
pdb|2R26|B Chain B, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
pdb|2R26|C Chain C, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
pdb|2R26|D Chain D, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
Length = 384
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 12/82 (14%)
Query: 185 SWRHLCTISGYHDRTIFSVH-WSREGIIASGAADDSVQFF-----VESKDDLIDGPSYKM 238
W L TI G ++ I +S E IIASGA D+ +Q+ + ++ +L YK
Sbjct: 16 KWTRLTTIDG--NKGILRYGGYSVEDIIASGAQDEEIQYLFLYGNLPTEQEL---RKYKE 70
Query: 239 LLKK-EKAHDMDVNSVQWSPGE 259
++K K D +N+++ P E
Sbjct: 71 TVQKGYKIPDFVINAIRQLPRE 92
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 219 SVQFFVESKDDLIDGPSYKMLLKKEKAHDMD----VNSVQWSPGERRLLASASDDGMIKI 274
+V+FF + DD + + D + VNS+++SP + L +A DG+I
Sbjct: 219 AVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISC 277
Query: 275 WEL 277
W L
Sbjct: 278 WNL 280
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 219 SVQFFVESKDDLIDGPSYKMLLKKEKAHDMD----VNSVQWSPGERRLLASASDDGMIKI 274
+V+FF + DD + + D + VNS+++SP + L +A DG+I
Sbjct: 219 AVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISC 277
Query: 275 WEL 277
W L
Sbjct: 278 WNL 280
>pdb|2IFC|A Chain A, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2IFC|B Chain B, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2IFC|C Chain C, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2IFC|D Chain D, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2R9E|A Chain A, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
pdb|2R9E|B Chain B, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
pdb|2R9E|C Chain C, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
pdb|2R9E|D Chain D, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
Length = 385
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 12/82 (14%)
Query: 185 SWRHLCTISGYHDRTIFSVH-WSREGIIASGAADDSVQFF-----VESKDDLIDGPSYKM 238
W L TI G ++ I +S E IIASGA D+ +Q+ + ++ +L YK
Sbjct: 17 KWTRLTTIDG--NKGILRYGGYSVEDIIASGAQDEEIQYLFLYGNLPTEQEL---RKYKE 71
Query: 239 LLKK-EKAHDMDVNSVQWSPGE 259
++K K D +N+++ P E
Sbjct: 72 TVQKGYKIPDFVINAIRQLPRE 93
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 58/126 (46%), Gaps = 25/126 (19%)
Query: 102 PTM--DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV 159
PT+ + L + S+ N ++ W +D+ QTI ++ H+ + + ++ G K+
Sbjct: 50 PTLPGNFLIAGSWANDVRCWEVQDSG-------QTIPKAQQMHTGPVLDVCWSDDGSKVF 102
Query: 160 SCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE---GIIASGAA 216
+ S D T K+W D++ Q+ HD + ++HW + + +G+
Sbjct: 103 TASCDKTAKMW--DLSSNQA-----------IQIAQHDAPVKTIHWIKAPNYSCVMTGSW 149
Query: 217 DDSVQF 222
D +++F
Sbjct: 150 DKTLKF 155
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSW--NAS 58
MHT V WS G + TAS D T +W+ +A H+ VK++ W +
Sbjct: 84 MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQ---HDAPVKTIHWIKAPN 140
Query: 59 GTLLATCGRDKSVWIWEVMPGNEFECVSVLQ 89
+ + T DK++ W+ N + + +
Sbjct: 141 YSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE 171
>pdb|1MO7|A Chain A, Atpase
pdb|1MO8|A Chain A, Atpase
Length = 213
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 168 KIWGADITRMQSGDGY----ASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDS 219
+I AD T QSG + A+W L I+G +R +F + I+ A D+
Sbjct: 14 QIHEADTTENQSGVSFDKTSATWFALSRIAGLCNRAVFQANQENLPILKRAVAGDA 69
>pdb|2JF6|A Chain A, Structure Of Inactive Mutant Of Strictosidine Glucosidase
In Complex With Strictosidine
pdb|2JF6|B Chain B, Structure Of Inactive Mutant Of Strictosidine Glucosidase
In Complex With Strictosidine
pdb|2JF7|A Chain A, Structure Of Strictosidine Glucosidase
pdb|2JF7|B Chain B, Structure Of Strictosidine Glucosidase
Length = 532
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 33/115 (28%)
Query: 129 WHCVQTISESNNGHSSTIW---------ALSFNAKGDKLVSCSDDLTIKIWGADITRMQS 179
+ C +E N G S IW +S + G++ ++C ++ DI M+
Sbjct: 56 YQCEGAYNEGNRGPS--IWDTFTQRSPAKISDGSNGNQAINC-----YHMYKEDIKIMKQ 108
Query: 180 GDGYASWRHLCTISGYHDRTIFSVHWSR---EGIIASGAADDSVQFFVESKDDLI 231
G S+R FS+ WSR G +A+G D V+F+ + D+L+
Sbjct: 109 -TGLESYR-------------FSISWSRVLPGGRLAAGVNKDGVKFYHDFIDELL 149
>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd
pdb|4AV9|A Chain A, Kluyveromyces Lactis Hsv2
pdb|4EXV|A Chain A, Structure Of Kluyveromyces Lactis Hsv2p
Length = 339
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 43 LEGHENEVKSVSWNASGTLLATCGRDKSV 71
++ H N VK V N G ++ATC +D ++
Sbjct: 175 VKAHANPVKMVRLNRKGDMVATCSQDGTL 203
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 87 VLQGHAQDVKMVQWHPTMDVLFSCSYDNT-IKVWWAEDTDSDNWHCVQTISESNNGHSST 145
+++ HA VKMV+ + D++ +CS D T I+V+ +DN V+ + ++
Sbjct: 174 LVKAHANPVKMVRLNRKGDMVATCSQDGTLIRVF-----QTDNGVLVREFRRGLD--RTS 226
Query: 146 IWALSFNAKGDKLVSCSDDLTIKIW 170
I + ++ G KL SD T+ ++
Sbjct: 227 IIDMRWSPDGSKLAVVSDKWTLHVF 251
>pdb|3VU4|A Chain A, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
pdb|3VU4|B Chain B, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
Length = 355
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 87 VLQGHAQDVKMVQWHPTMDVLFSCSYDNT-IKVWWAED 123
+++ H +KMV+ + D++ +CS D T I+V+ ED
Sbjct: 190 LIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTED 227
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 27.7 bits (60), Expect = 7.6, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 168 KIWGADITRMQSGDGY----ASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQ 221
+I AD T QSG + A+W L I+G +R +F + I+ A D+ +
Sbjct: 365 QIHEADTTENQSGVSFDKTSATWLALSRIAGLCNRAVFQANQENLPILKRAVAGDASE 422
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 27.7 bits (60), Expect = 7.6, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 168 KIWGADITRMQSGDGY----ASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQ 221
+I AD T QSG + A+W L I+G +R +F + I+ A D+ +
Sbjct: 371 QIHEADTTENQSGVSFDKTSATWLALSRIAGLCNRAVFQANQENLPILKRAVAGDASE 428
>pdb|4H51|A Chain A, Crystal Structure Of A Putative Aspartate Aminotransferase
From Leishmania Major Friedlin
pdb|4H51|B Chain B, Crystal Structure Of A Putative Aspartate Aminotransferase
From Leishmania Major Friedlin
Length = 420
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 113 DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA 172
D +K+ + + +N VQT+S + A+S AK L D T I+ +
Sbjct: 94 DEAVKIIYGNTVELENLVAVQTLSGTG--------AVSLGAK--LLTRVFDAETTPIYLS 143
Query: 173 DIT--RMQSGDGYASWRHLCTISGYHDRTI-FSVHWSREGIIASGAADDSV 220
D T A W+++CT + Y +T+ + ++ I+A A D SV
Sbjct: 144 DPTWPNHYGVVKAAGWKNICTYAYYDPKTVSLNFEGMKKDILA--APDGSV 192
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.130 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,408,239
Number of Sequences: 62578
Number of extensions: 386741
Number of successful extensions: 2304
Number of sequences better than 100.0: 120
Number of HSP's better than 100.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 901
Number of HSP's gapped (non-prelim): 533
length of query: 281
length of database: 14,973,337
effective HSP length: 98
effective length of query: 183
effective length of database: 8,840,693
effective search space: 1617846819
effective search space used: 1617846819
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)