Query 023500
Match_columns 281
No_of_seqs 141 out of 1305
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 04:30:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023500.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023500hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0645 WD40 repeat protein [G 100.0 1.9E-49 4.1E-54 293.8 27.7 252 2-278 60-311 (312)
2 KOG0271 Notchless-like WD40 re 100.0 2.6E-42 5.6E-47 267.2 23.1 254 2-280 114-441 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 1E-42 2.2E-47 272.2 20.7 241 3-278 175-418 (459)
4 KOG0272 U4/U6 small nuclear ri 100.0 9.1E-41 2E-45 261.3 18.2 239 2-276 216-458 (459)
5 KOG0271 Notchless-like WD40 re 100.0 1.1E-39 2.5E-44 252.5 23.9 248 2-276 156-479 (480)
6 KOG0279 G protein beta subunit 100.0 8.7E-39 1.9E-43 238.1 27.1 249 2-279 62-314 (315)
7 KOG0284 Polyadenylation factor 100.0 5.1E-39 1.1E-43 250.6 17.5 243 2-280 137-382 (464)
8 KOG0645 WD40 repeat protein [G 100.0 1.5E-36 3.2E-41 225.5 29.1 246 2-279 13-262 (312)
9 KOG0286 G-protein beta subunit 100.0 7.1E-36 1.5E-40 224.0 26.1 239 4-276 98-343 (343)
10 KOG0263 Transcription initiati 100.0 3.4E-36 7.3E-41 252.0 24.2 243 4-280 379-651 (707)
11 KOG0263 Transcription initiati 100.0 5.7E-36 1.2E-40 250.7 23.3 200 2-227 450-650 (707)
12 KOG0279 G protein beta subunit 100.0 2E-34 4.3E-39 215.0 26.5 244 1-279 13-263 (315)
13 KOG0315 G-protein beta subunit 100.0 1.6E-34 3.5E-39 212.3 25.5 249 3-279 40-289 (311)
14 KOG0293 WD40 repeat-containing 100.0 2.4E-35 5.2E-40 230.6 22.4 256 2-279 223-514 (519)
15 KOG0295 WD40 repeat-containing 100.0 1.5E-35 3.3E-40 228.2 19.7 244 2-280 107-366 (406)
16 KOG0318 WD40 repeat stress pro 100.0 7.7E-34 1.7E-38 228.2 29.5 258 2-280 189-562 (603)
17 KOG0284 Polyadenylation factor 100.0 3.1E-36 6.6E-41 235.1 15.0 239 4-278 97-337 (464)
18 KOG0273 Beta-transducin family 100.0 6.8E-34 1.5E-38 225.7 25.2 239 3-279 235-483 (524)
19 KOG0285 Pleiotropic regulator 100.0 4E-34 8.7E-39 220.2 22.8 242 1-279 149-390 (460)
20 KOG0277 Peroxisomal targeting 100.0 1.9E-34 4.2E-39 212.5 18.7 243 3-277 60-308 (311)
21 KOG0266 WD40 repeat-containing 100.0 8.7E-33 1.9E-37 234.7 29.2 248 2-279 158-410 (456)
22 KOG0313 Microtubule binding pr 100.0 1E-33 2.2E-38 219.2 21.3 254 2-280 104-378 (423)
23 KOG0296 Angio-associated migra 100.0 1.4E-32 2.9E-37 212.0 27.4 253 2-278 63-398 (399)
24 KOG0286 G-protein beta subunit 100.0 2.7E-32 5.8E-37 204.9 28.1 245 2-278 54-303 (343)
25 KOG0643 Translation initiation 100.0 4.3E-33 9.3E-38 206.8 21.5 253 2-278 9-317 (327)
26 KOG0315 G-protein beta subunit 100.0 1.6E-32 3.5E-37 201.9 24.3 235 16-279 11-246 (311)
27 KOG0282 mRNA splicing factor [ 100.0 4.9E-34 1.1E-38 227.1 17.4 252 2-276 213-503 (503)
28 KOG0264 Nucleosome remodeling 100.0 7.4E-33 1.6E-37 218.9 22.9 260 1-278 122-404 (422)
29 KOG0266 WD40 repeat-containing 100.0 3.4E-32 7.4E-37 231.1 28.0 247 2-278 202-454 (456)
30 KOG0316 Conserved WD40 repeat- 100.0 2.3E-32 5E-37 199.6 22.4 240 2-279 16-258 (307)
31 KOG0265 U5 snRNP-specific prot 100.0 3.2E-32 7E-37 205.1 23.8 248 2-279 46-297 (338)
32 KOG0276 Vesicle coat complex C 100.0 2.1E-32 4.5E-37 224.2 23.7 241 2-277 12-256 (794)
33 KOG0292 Vesicle coat complex C 100.0 1.1E-32 2.4E-37 233.7 22.8 255 4-280 10-282 (1202)
34 KOG0295 WD40 repeat-containing 100.0 1.4E-32 3.1E-37 211.8 21.3 241 2-277 149-405 (406)
35 KOG0319 WD40-repeat-containing 100.0 1.2E-32 2.5E-37 229.3 21.9 244 2-276 364-617 (775)
36 KOG0291 WD40-repeat-containing 100.0 3.1E-31 6.8E-36 221.4 28.2 252 2-280 349-614 (893)
37 KOG0283 WD40 repeat-containing 100.0 3.3E-32 7.1E-37 229.8 21.2 250 2-278 266-576 (712)
38 PLN00181 protein SPA1-RELATED; 100.0 5.6E-30 1.2E-34 232.2 32.8 248 2-278 482-738 (793)
39 KOG0281 Beta-TrCP (transducin 100.0 2.8E-32 6E-37 209.6 13.7 233 3-279 197-429 (499)
40 KOG0291 WD40-repeat-containing 100.0 5.7E-30 1.2E-34 213.9 27.3 242 3-279 307-551 (893)
41 KOG0281 Beta-TrCP (transducin 100.0 7.7E-32 1.7E-36 207.2 14.8 243 2-279 236-478 (499)
42 KOG0640 mRNA cleavage stimulat 100.0 1.1E-30 2.4E-35 198.0 19.9 258 2-278 111-426 (430)
43 KOG0292 Vesicle coat complex C 100.0 3.2E-30 6.8E-35 218.9 24.7 253 2-280 50-323 (1202)
44 cd00200 WD40 WD40 domain, foun 100.0 8.4E-29 1.8E-33 198.3 31.1 242 2-279 8-250 (289)
45 KOG2445 Nuclear pore complex c 100.0 4.2E-29 9.1E-34 189.0 26.9 267 2-278 12-318 (361)
46 KOG0318 WD40 repeat stress pro 100.0 2.6E-29 5.7E-34 202.3 27.2 250 2-280 58-352 (603)
47 KOG0278 Serine/threonine kinas 100.0 8.1E-31 1.8E-35 193.1 14.8 242 2-279 13-298 (334)
48 KOG0313 Microtubule binding pr 100.0 1.2E-29 2.6E-34 196.7 22.0 248 2-279 143-419 (423)
49 PTZ00421 coronin; Provisional 100.0 1.7E-28 3.6E-33 208.3 30.9 249 4-280 21-292 (493)
50 KOG0305 Anaphase promoting com 100.0 2.1E-29 4.5E-34 207.5 24.1 239 3-279 217-462 (484)
51 PLN00181 protein SPA1-RELATED; 100.0 2.3E-28 5E-33 221.7 33.2 253 3-277 532-792 (793)
52 KOG0294 WD40 repeat-containing 100.0 5.5E-29 1.2E-33 188.9 23.6 238 2-279 42-282 (362)
53 KOG0277 Peroxisomal targeting 100.0 1.9E-29 4.1E-34 186.2 20.5 241 7-279 12-266 (311)
54 KOG1332 Vesicle coat complex C 100.0 1.1E-29 2.3E-34 186.5 18.5 253 1-277 9-285 (299)
55 KOG0276 Vesicle coat complex C 100.0 1.5E-29 3.2E-34 207.6 21.2 163 2-177 96-261 (794)
56 KOG0273 Beta-transducin family 100.0 2.6E-28 5.7E-33 194.1 27.2 240 1-278 274-523 (524)
57 cd00200 WD40 WD40 domain, foun 100.0 5.9E-28 1.3E-32 193.4 29.4 239 2-276 50-289 (289)
58 KOG0973 Histone transcription 100.0 7.6E-29 1.6E-33 214.7 24.8 258 3-279 13-356 (942)
59 KOG0319 WD40-repeat-containing 100.0 8.3E-29 1.8E-33 206.4 24.0 251 4-279 324-578 (775)
60 KOG0275 Conserved WD40 repeat- 100.0 1.9E-30 4E-35 198.1 12.0 251 4-276 214-507 (508)
61 KOG0647 mRNA export protein (c 100.0 2.7E-28 5.8E-33 184.2 22.6 248 3-278 27-281 (347)
62 PTZ00421 coronin; Provisional 100.0 1.6E-27 3.5E-32 202.3 29.8 227 2-258 74-314 (493)
63 KOG0265 U5 snRNP-specific prot 100.0 4.3E-28 9.3E-33 182.9 23.1 243 2-276 89-336 (338)
64 KOG0299 U3 snoRNP-associated p 100.0 1.4E-28 3.1E-33 195.0 21.5 253 2-280 141-412 (479)
65 KOG1407 WD40 repeat protein [F 100.0 4.9E-28 1.1E-32 179.4 22.8 252 1-279 18-312 (313)
66 KOG0285 Pleiotropic regulator 100.0 3.4E-28 7.3E-33 187.7 22.3 247 2-277 192-438 (460)
67 KOG2096 WD40 repeat protein [G 100.0 6.1E-28 1.3E-32 183.7 22.4 259 2-276 85-400 (420)
68 KOG0306 WD40-repeat-containing 100.0 2.8E-28 6E-33 203.8 22.4 241 5-279 414-665 (888)
69 PTZ00420 coronin; Provisional 100.0 1.1E-26 2.5E-31 198.3 31.5 228 21-279 50-294 (568)
70 KOG0301 Phospholipase A2-activ 100.0 2.1E-27 4.6E-32 196.9 20.3 235 2-278 13-249 (745)
71 KOG0269 WD40 repeat-containing 100.0 4.6E-28 1E-32 203.0 16.6 238 6-273 90-335 (839)
72 PTZ00420 coronin; Provisional 100.0 1.2E-25 2.6E-30 192.0 29.7 226 2-258 73-317 (568)
73 KOG0274 Cdc4 and related F-box 100.0 3.8E-26 8.3E-31 194.4 25.3 236 1-280 247-484 (537)
74 KOG0299 U3 snoRNP-associated p 100.0 1.2E-26 2.5E-31 184.3 20.2 252 1-275 200-453 (479)
75 KOG0310 Conserved WD40 repeat- 100.0 5.1E-26 1.1E-30 181.8 23.5 235 3-274 68-305 (487)
76 KOG0300 WD40 repeat-containing 100.0 1.9E-26 4.1E-31 175.8 20.1 245 2-278 147-428 (481)
77 KOG1446 Histone H3 (Lys4) meth 100.0 8.4E-25 1.8E-29 166.4 28.9 247 3-279 14-263 (311)
78 KOG1036 Mitotic spindle checkp 100.0 5.6E-26 1.2E-30 172.2 22.1 247 3-280 13-264 (323)
79 KOG0289 mRNA splicing factor [ 100.0 1.1E-25 2.3E-30 177.7 24.2 245 2-277 260-505 (506)
80 KOG0274 Cdc4 and related F-box 100.0 6E-26 1.3E-30 193.2 24.3 236 2-279 207-442 (537)
81 KOG0310 Conserved WD40 repeat- 100.0 2E-26 4.4E-31 184.1 20.1 239 4-278 27-268 (487)
82 KOG0283 WD40 repeat-containing 100.0 9.7E-27 2.1E-31 196.9 18.9 211 42-277 261-531 (712)
83 KOG0973 Histone transcription 100.0 1.7E-26 3.6E-31 200.3 20.3 213 2-228 68-357 (942)
84 KOG0306 WD40-repeat-containing 99.9 1.2E-25 2.5E-30 188.3 23.8 246 2-277 372-621 (888)
85 KOG0641 WD40 repeat protein [G 99.9 2.3E-24 5E-29 157.2 27.0 249 2-278 88-349 (350)
86 KOG0268 Sof1-like rRNA process 99.9 8.4E-27 1.8E-31 180.2 14.9 243 1-277 64-344 (433)
87 KOG0772 Uncharacterized conser 99.9 1.5E-25 3.3E-30 180.4 22.4 213 2-226 166-394 (641)
88 KOG0640 mRNA cleavage stimulat 99.9 2.5E-26 5.5E-31 174.4 16.9 216 40-280 105-337 (430)
89 KOG0288 WD40 repeat protein Ti 99.9 1.1E-26 2.4E-31 182.1 13.8 245 2-280 174-419 (459)
90 KOG0264 Nucleosome remodeling 99.9 7.4E-26 1.6E-30 179.4 18.2 216 2-226 176-404 (422)
91 KOG0289 mRNA splicing factor [ 99.9 8.2E-25 1.8E-29 172.8 23.0 240 4-276 220-460 (506)
92 KOG0301 Phospholipase A2-activ 99.9 3.2E-25 7E-30 184.1 21.7 228 3-278 57-288 (745)
93 KOG0302 Ribosome Assembly prot 99.9 4.4E-25 9.5E-30 171.5 20.8 253 2-271 150-432 (440)
94 KOG0316 Conserved WD40 repeat- 99.9 7.4E-25 1.6E-29 160.5 20.5 239 2-276 58-297 (307)
95 KOG0282 mRNA splicing factor [ 99.9 4E-26 8.7E-31 182.2 14.9 217 39-280 206-464 (503)
96 KOG0288 WD40 repeat protein Ti 99.9 2.2E-25 4.7E-30 174.9 18.6 237 4-276 220-459 (459)
97 KOG0308 Conserved WD40 repeat- 99.9 1.4E-25 3E-30 185.1 18.0 242 14-279 36-286 (735)
98 KOG0300 WD40 repeat-containing 99.9 6E-25 1.3E-29 167.6 19.3 249 2-280 189-478 (481)
99 KOG0641 WD40 repeat protein [G 99.9 2E-23 4.3E-28 152.4 25.8 251 4-279 33-304 (350)
100 KOG1332 Vesicle coat complex C 99.9 6E-25 1.3E-29 161.7 16.1 210 2-227 55-287 (299)
101 KOG0772 Uncharacterized conser 99.9 8.2E-25 1.8E-29 176.3 18.1 221 41-280 161-396 (641)
102 KOG4283 Transcription-coupled 99.9 3.3E-23 7.1E-28 156.6 21.7 214 1-227 41-277 (397)
103 KOG1274 WD40 repeat protein [G 99.9 9.3E-23 2E-27 174.4 26.0 249 2-278 12-262 (933)
104 KOG0321 WD40 repeat-containing 99.9 3E-23 6.5E-28 171.1 22.1 260 2-280 99-393 (720)
105 KOG0302 Ribosome Assembly prot 99.9 6.8E-24 1.5E-28 164.9 17.3 215 2-223 210-436 (440)
106 KOG0267 Microtubule severing p 99.9 8E-25 1.7E-29 182.6 12.1 230 2-267 27-257 (825)
107 KOG0296 Angio-associated migra 99.9 1.4E-22 3.1E-27 157.0 23.2 117 2-123 105-221 (399)
108 KOG0646 WD40 repeat protein [G 99.9 5E-23 1.1E-27 164.0 21.3 235 4-260 82-332 (476)
109 KOG1063 RNA polymerase II elon 99.9 1.3E-22 2.9E-27 168.7 24.4 259 2-279 266-649 (764)
110 KOG4283 Transcription-coupled 99.9 5.3E-23 1.1E-27 155.5 19.4 253 2-277 100-364 (397)
111 KOG0278 Serine/threonine kinas 99.9 1.6E-23 3.4E-28 154.9 16.1 199 2-227 99-298 (334)
112 KOG0270 WD40 repeat-containing 99.9 9.2E-23 2E-27 161.6 21.4 235 15-279 192-450 (463)
113 KOG1408 WD40 repeat protein [F 99.9 2.2E-23 4.8E-28 174.2 18.4 248 4-280 460-715 (1080)
114 KOG0646 WD40 repeat protein [G 99.9 1.2E-22 2.6E-27 161.9 20.1 246 16-280 51-309 (476)
115 KOG1007 WD repeat protein TSSC 99.9 3.2E-22 6.9E-27 150.8 21.2 257 2-278 62-361 (370)
116 KOG0293 WD40 repeat-containing 99.9 8.1E-23 1.8E-27 160.7 18.6 209 39-278 216-425 (519)
117 KOG1407 WD40 repeat protein [F 99.9 1.3E-22 2.7E-27 150.9 18.3 213 42-276 15-259 (313)
118 KOG0269 WD40 repeat-containing 99.9 1.7E-23 3.7E-28 175.8 15.3 196 2-220 132-334 (839)
119 KOG1523 Actin-related protein 99.9 1.8E-22 3.9E-27 154.1 18.9 166 4-174 11-177 (361)
120 KOG0305 Anaphase promoting com 99.9 8.9E-22 1.9E-26 162.6 23.5 232 9-279 183-420 (484)
121 KOG0267 Microtubule severing p 99.9 3.3E-24 7.1E-29 179.0 8.8 223 14-278 3-226 (825)
122 KOG0275 Conserved WD40 repeat- 99.9 5.5E-23 1.2E-27 157.4 14.5 161 1-173 261-423 (508)
123 KOG0308 Conserved WD40 repeat- 99.9 1.4E-22 3E-27 167.5 17.9 245 2-277 72-326 (735)
124 KOG2445 Nuclear pore complex c 99.9 1.4E-21 3.1E-26 148.5 21.7 221 44-279 10-257 (361)
125 KOG2048 WD40 repeat protein [G 99.9 8.6E-21 1.9E-25 157.6 27.9 248 4-277 26-274 (691)
126 KOG0639 Transducin-like enhanc 99.9 2E-22 4.3E-27 162.3 17.0 238 4-278 466-704 (705)
127 KOG0643 Translation initiation 99.9 5.4E-21 1.2E-25 142.7 21.8 211 42-279 5-221 (327)
128 KOG0650 WD40 repeat nucleolar 99.9 2.3E-21 5.1E-26 159.1 21.8 258 2-275 399-732 (733)
129 KOG0639 Transducin-like enhanc 99.9 5.3E-22 1.1E-26 159.9 17.2 243 2-279 418-664 (705)
130 KOG1446 Histone H3 (Lys4) meth 99.9 9.1E-20 2E-24 139.2 27.9 240 4-277 57-302 (311)
131 KOG1009 Chromatin assembly com 99.9 2.9E-21 6.2E-26 151.7 19.8 162 4-174 14-196 (434)
132 KOG0647 mRNA export protein (c 99.9 1E-20 2.2E-25 143.4 22.1 243 1-269 70-315 (347)
133 KOG2055 WD40 repeat protein [G 99.9 8.3E-21 1.8E-25 151.3 22.3 255 3-278 213-512 (514)
134 KOG1273 WD40 repeat protein [G 99.9 1.7E-20 3.8E-25 143.1 21.3 250 6-278 26-280 (405)
135 KOG2106 Uncharacterized conser 99.9 9.1E-20 2E-24 147.1 26.2 235 4-276 247-519 (626)
136 KOG0307 Vesicle coat complex C 99.9 5.9E-22 1.3E-26 173.2 14.8 245 6-280 67-329 (1049)
137 KOG1063 RNA polymerase II elon 99.9 1.9E-20 4.1E-25 156.0 21.8 254 8-278 150-437 (764)
138 KOG0642 Cell-cycle nuclear pro 99.9 2.6E-21 5.7E-26 157.7 15.2 256 2-279 293-562 (577)
139 KOG2106 Uncharacterized conser 99.9 7.6E-20 1.6E-24 147.5 23.0 252 1-277 366-625 (626)
140 KOG4328 WD40 protein [Function 99.9 2.9E-20 6.4E-25 148.1 20.1 256 1-277 184-494 (498)
141 KOG2048 WD40 repeat protein [G 99.9 4.8E-19 1E-23 147.4 26.1 248 3-276 69-317 (691)
142 KOG1034 Transcriptional repres 99.9 5E-20 1.1E-24 141.3 18.3 266 2-279 37-338 (385)
143 KOG0294 WD40 repeat-containing 99.9 1.3E-19 2.8E-24 138.3 19.9 201 38-278 34-237 (362)
144 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.8E-18 8.3E-23 138.3 30.0 241 5-279 32-280 (300)
145 KOG0303 Actin-binding protein 99.9 1E-19 2.2E-24 142.7 18.8 211 42-280 76-296 (472)
146 KOG1034 Transcriptional repres 99.9 1.6E-19 3.4E-24 138.6 19.2 259 6-279 92-384 (385)
147 KOG0270 WD40 repeat-containing 99.9 6E-20 1.3E-24 145.8 17.3 203 2-227 242-450 (463)
148 KOG2096 WD40 repeat protein [G 99.9 1.2E-19 2.6E-24 138.8 18.1 207 2-224 186-400 (420)
149 KOG1539 WD repeat protein [Gen 99.8 8.2E-19 1.8E-23 149.1 23.5 265 4-279 245-607 (910)
150 KOG0321 WD40 repeat-containing 99.8 3E-19 6.5E-24 147.7 20.3 264 9-280 55-349 (720)
151 KOG1274 WD40 repeat protein [G 99.8 1.5E-18 3.3E-23 149.0 23.8 227 2-261 55-284 (933)
152 KOG1538 Uncharacterized conser 99.8 3.7E-19 8E-24 148.3 18.5 232 4-276 13-250 (1081)
153 KOG1036 Mitotic spindle checkp 99.8 3.9E-18 8.6E-23 129.8 22.0 238 2-267 53-293 (323)
154 KOG1523 Actin-related protein 99.8 1.2E-18 2.6E-23 133.3 18.9 173 1-173 53-236 (361)
155 KOG1188 WD40 repeat protein [G 99.8 9.7E-19 2.1E-23 134.9 17.1 149 16-174 41-197 (376)
156 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 6.4E-17 1.4E-21 131.1 28.3 230 15-279 1-238 (300)
157 KOG4378 Nuclear protein COP1 [ 99.8 1.1E-18 2.3E-23 140.9 16.4 241 5-280 36-282 (673)
158 KOG1310 WD40 repeat protein [G 99.8 2.2E-18 4.8E-23 140.6 17.3 169 2-173 49-231 (758)
159 KOG0268 Sof1-like rRNA process 99.8 2E-19 4.4E-24 139.6 10.7 157 4-173 188-345 (433)
160 KOG4328 WD40 protein [Function 99.8 5.2E-18 1.1E-22 135.4 18.3 214 40-277 179-398 (498)
161 KOG0290 Conserved WD40 repeat- 99.8 4.3E-18 9.2E-23 128.8 16.7 210 2-280 95-320 (364)
162 KOG1963 WD40 repeat protein [G 99.8 7.7E-17 1.7E-21 138.1 26.2 271 1-279 203-539 (792)
163 KOG0303 Actin-binding protein 99.8 1.1E-17 2.5E-22 131.3 19.4 204 2-228 80-296 (472)
164 KOG4227 WD40 repeat protein [G 99.8 2.7E-17 5.8E-22 129.4 21.4 269 2-278 55-387 (609)
165 KOG0307 Vesicle coat complex C 99.8 3.1E-19 6.7E-24 156.4 11.4 245 8-279 11-285 (1049)
166 KOG4378 Nuclear protein COP1 [ 99.8 2.3E-18 5E-23 138.9 15.3 217 8-258 84-304 (673)
167 KOG1408 WD40 repeat protein [F 99.8 1.4E-17 3.1E-22 139.9 20.0 254 1-279 367-672 (1080)
168 KOG1445 Tumor-specific antigen 99.8 8.1E-18 1.8E-22 139.6 16.2 156 11-175 587-752 (1012)
169 COG2319 FOG: WD40 repeat [Gene 99.8 2.8E-15 6E-20 126.5 31.5 245 2-279 64-315 (466)
170 KOG0644 Uncharacterized conser 99.8 9.9E-19 2.1E-23 148.8 9.5 237 2-279 189-427 (1113)
171 KOG1538 Uncharacterized conser 99.8 2.4E-17 5.1E-22 137.7 16.9 235 2-277 52-292 (1081)
172 KOG2919 Guanine nucleotide-bin 99.8 3E-17 6.6E-22 126.0 15.7 226 13-268 121-360 (406)
173 KOG1539 WD repeat protein [Gen 99.8 3.3E-16 7.2E-21 133.6 23.4 261 3-280 202-525 (910)
174 KOG0771 Prolactin regulatory e 99.8 4.8E-17 1E-21 128.8 16.2 159 7-173 148-311 (398)
175 COG2319 FOG: WD40 repeat [Gene 99.8 1.1E-14 2.4E-19 122.8 31.6 243 2-280 154-402 (466)
176 KOG1524 WD40 repeat-containing 99.8 3E-17 6.6E-22 133.7 15.0 205 16-273 76-281 (737)
177 KOG1007 WD repeat protein TSSC 99.8 9.2E-17 2E-21 121.6 16.5 231 23-278 38-289 (370)
178 KOG1273 WD40 repeat protein [G 99.7 6E-16 1.3E-20 118.6 19.5 251 2-278 64-322 (405)
179 KOG0650 WD40 repeat nucleolar 99.7 3.9E-16 8.5E-21 128.8 19.8 223 38-275 391-677 (733)
180 KOG1009 Chromatin assembly com 99.7 2.6E-16 5.6E-21 124.1 17.9 116 2-120 64-193 (434)
181 PRK11028 6-phosphogluconolacto 99.7 2.6E-14 5.6E-19 117.7 30.5 257 4-278 35-304 (330)
182 KOG1587 Cytoplasmic dynein int 99.7 1.5E-15 3.2E-20 129.3 23.4 255 3-279 242-517 (555)
183 KOG2919 Guanine nucleotide-bin 99.7 2.3E-15 5E-20 115.8 21.6 249 7-279 53-328 (406)
184 KOG0290 Conserved WD40 repeat- 99.7 5.1E-16 1.1E-20 117.7 17.5 204 3-221 150-360 (364)
185 KOG0649 WD40 repeat protein [G 99.7 2.7E-15 5.8E-20 111.2 20.2 245 5-278 12-274 (325)
186 KOG1445 Tumor-specific antigen 99.7 2.2E-16 4.7E-21 131.3 15.7 205 4-227 628-845 (1012)
187 KOG1587 Cytoplasmic dynein int 99.7 1.1E-14 2.3E-19 124.1 23.3 239 25-279 222-473 (555)
188 KOG1334 WD40 repeat protein [G 99.7 1.3E-15 2.9E-20 122.8 16.7 268 2-278 141-424 (559)
189 KOG1517 Guanine nucleotide bin 99.7 7.4E-15 1.6E-19 128.5 22.0 255 5-280 1111-1383(1387)
190 KOG0642 Cell-cycle nuclear pro 99.7 1.9E-15 4.1E-20 123.9 14.3 134 39-173 286-426 (577)
191 KOG2055 WD40 repeat protein [G 99.7 2.3E-14 4.9E-19 115.1 19.6 203 46-278 212-417 (514)
192 PRK11028 6-phosphogluconolacto 99.7 5E-13 1.1E-17 110.1 28.3 243 18-278 5-258 (330)
193 KOG1524 WD40 repeat-containing 99.7 3.4E-15 7.4E-20 122.0 14.8 179 2-222 103-282 (737)
194 PRK01742 tolB translocation pr 99.7 1.9E-14 4.2E-19 122.3 19.3 218 2-258 202-426 (429)
195 KOG0322 G-protein beta subunit 99.6 8.8E-15 1.9E-19 109.6 13.6 255 2-278 13-323 (323)
196 KOG1240 Protein kinase contain 99.6 3.8E-13 8.3E-18 119.6 24.1 267 2-276 1047-1431(1431)
197 PF08662 eIF2A: Eukaryotic tra 99.6 1.3E-13 2.9E-18 103.9 18.2 148 8-173 10-179 (194)
198 KOG1310 WD40 repeat protein [G 99.6 5.5E-15 1.2E-19 121.1 10.7 235 40-279 43-304 (758)
199 KOG1517 Guanine nucleotide bin 99.6 6.7E-13 1.4E-17 116.6 23.6 249 6-279 1067-1334(1387)
200 KOG1188 WD40 repeat protein [G 99.6 9.1E-14 2E-18 107.7 15.5 194 60-279 41-243 (376)
201 KOG0322 G-protein beta subunit 99.6 3E-14 6.6E-19 106.8 12.0 160 4-172 151-322 (323)
202 KOG1963 WD40 repeat protein [G 99.6 2.7E-12 5.9E-17 110.6 25.2 155 7-172 164-321 (792)
203 KOG0644 Uncharacterized conser 99.6 3.4E-15 7.4E-20 127.7 6.3 160 40-223 183-343 (1113)
204 KOG2110 Uncharacterized conser 99.6 5.1E-12 1.1E-16 99.1 23.0 156 5-175 89-250 (391)
205 KOG0649 WD40 repeat protein [G 99.6 6.8E-12 1.5E-16 93.4 22.1 197 2-226 61-274 (325)
206 PRK01742 tolB translocation pr 99.6 7.9E-13 1.7E-17 112.5 19.8 212 24-277 183-400 (429)
207 KOG2394 WD40 protein DMR-N9 [G 99.6 8E-14 1.7E-18 114.0 12.8 138 3-152 219-383 (636)
208 KOG1240 Protein kinase contain 99.5 4.1E-12 8.9E-17 113.2 23.4 231 38-280 1039-1336(1431)
209 KOG2139 WD40 repeat protein [G 99.5 2E-11 4.3E-16 95.8 24.0 149 3-165 140-303 (445)
210 KOG2394 WD40 protein DMR-N9 [G 99.5 1E-13 2.2E-18 113.4 9.9 94 3-101 290-383 (636)
211 PF08662 eIF2A: Eukaryotic tra 99.5 1.8E-12 3.9E-17 97.8 15.2 109 4-122 60-179 (194)
212 KOG2139 WD40 repeat protein [G 99.5 8.1E-12 1.8E-16 97.9 18.6 181 5-210 100-293 (445)
213 KOG4227 WD40 repeat protein [G 99.5 8.4E-13 1.8E-17 104.4 13.4 129 39-174 48-180 (609)
214 KOG3881 Uncharacterized conser 99.5 1.8E-11 3.9E-16 96.7 20.1 251 5-279 57-321 (412)
215 KOG1354 Serine/threonine prote 99.5 9.5E-12 2.1E-16 97.0 17.8 270 4-278 26-359 (433)
216 KOG0974 WD-repeat protein WDR6 99.5 8E-13 1.7E-17 115.8 13.1 148 10-173 140-288 (967)
217 KOG1272 WD40-repeat-containing 99.5 1.4E-12 3.1E-17 105.1 13.4 222 7-259 133-391 (545)
218 PRK02889 tolB translocation pr 99.5 2.2E-11 4.7E-16 103.6 21.5 161 2-175 194-362 (427)
219 PRK03629 tolB translocation pr 99.5 7.4E-11 1.6E-15 100.3 24.4 213 4-257 199-427 (429)
220 KOG1334 WD40 repeat protein [G 99.5 2.3E-12 4.9E-17 104.5 13.7 263 2-277 184-465 (559)
221 PRK04922 tolB translocation pr 99.4 5.2E-11 1.1E-15 101.6 22.2 156 3-175 203-370 (433)
222 KOG1409 Uncharacterized conser 99.4 2.1E-11 4.6E-16 95.0 17.2 163 4-175 69-272 (404)
223 KOG4497 Uncharacterized conser 99.4 3.6E-12 7.7E-17 98.8 12.9 144 4-171 92-238 (447)
224 KOG0974 WD-repeat protein WDR6 99.4 1.1E-11 2.5E-16 108.7 17.4 151 7-173 91-246 (967)
225 PRK05137 tolB translocation pr 99.4 1.6E-10 3.4E-15 98.8 23.9 154 2-172 200-365 (435)
226 KOG2110 Uncharacterized conser 99.4 2.6E-10 5.5E-15 89.8 22.5 160 47-279 87-249 (391)
227 KOG0771 Prolactin regulatory e 99.4 6.1E-12 1.3E-16 100.2 13.2 161 2-173 185-354 (398)
228 PF10282 Lactonase: Lactonase, 99.4 1.7E-08 3.7E-13 83.6 31.8 257 6-278 39-322 (345)
229 PRK02889 tolB translocation pr 99.4 3.9E-10 8.5E-15 95.9 22.0 213 26-275 177-398 (427)
230 KOG1064 RAVE (regulator of V-A 99.3 2.5E-11 5.3E-16 112.1 14.1 191 4-230 2209-2402(2439)
231 KOG2321 WD40 repeat protein [G 99.3 6.2E-10 1.3E-14 92.4 20.8 243 4-275 52-340 (703)
232 KOG2111 Uncharacterized conser 99.3 6.4E-09 1.4E-13 80.6 24.7 178 25-227 75-257 (346)
233 KOG2111 Uncharacterized conser 99.3 2.6E-09 5.7E-14 82.7 22.0 159 4-174 95-257 (346)
234 PRK04922 tolB translocation pr 99.3 9.8E-10 2.1E-14 93.8 22.2 214 26-278 185-411 (433)
235 COG2706 3-carboxymuconate cycl 99.3 4E-08 8.6E-13 77.7 28.1 261 4-279 40-322 (346)
236 KOG1272 WD40-repeat-containing 99.3 1.7E-11 3.7E-16 99.0 8.9 192 51-280 133-325 (545)
237 KOG0280 Uncharacterized conser 99.3 3.8E-10 8.2E-15 86.4 15.4 156 7-173 125-284 (339)
238 KOG4497 Uncharacterized conser 99.3 4.5E-11 9.8E-16 92.8 10.5 223 8-275 13-237 (447)
239 TIGR02800 propeller_TolB tol-p 99.2 6.9E-09 1.5E-13 88.4 23.4 154 4-174 190-355 (417)
240 PF10282 Lactonase: Lactonase, 99.2 2.1E-07 4.6E-12 77.1 31.2 248 19-278 3-275 (345)
241 PRK03629 tolB translocation pr 99.2 2.6E-08 5.6E-13 84.9 25.3 212 26-277 180-405 (429)
242 PRK00178 tolB translocation pr 99.2 2.2E-08 4.8E-13 85.6 24.2 155 3-174 198-364 (430)
243 PRK05137 tolB translocation pr 99.2 1.9E-08 4.2E-13 86.0 23.3 131 26-173 183-322 (435)
244 PRK04792 tolB translocation pr 99.2 1.4E-08 3.1E-13 86.9 22.4 150 4-170 218-377 (448)
245 PF02239 Cytochrom_D1: Cytochr 99.2 1.9E-07 4.1E-12 77.7 27.8 157 8-175 41-204 (369)
246 KOG1409 Uncharacterized conser 99.2 5.1E-09 1.1E-13 82.0 17.2 246 2-280 23-272 (404)
247 KOG0280 Uncharacterized conser 99.2 2.6E-08 5.5E-13 76.6 20.3 235 14-277 83-332 (339)
248 KOG1354 Serine/threonine prote 99.2 2.8E-09 6.2E-14 83.4 15.1 225 47-278 25-301 (433)
249 TIGR02800 propeller_TolB tol-p 99.2 5.4E-08 1.2E-12 82.9 24.6 210 26-276 171-395 (417)
250 KOG3881 Uncharacterized conser 99.1 1E-08 2.2E-13 81.5 18.0 191 17-227 117-321 (412)
251 PF04762 IKI3: IKI3 family; I 99.1 3.5E-08 7.6E-13 90.7 24.3 158 4-173 121-333 (928)
252 PRK01029 tolB translocation pr 99.1 3.7E-08 8.1E-13 83.7 22.9 161 6-175 187-361 (428)
253 KOG2041 WD40 repeat protein [G 99.1 2E-09 4.4E-14 91.8 14.5 243 4-269 15-279 (1189)
254 KOG2321 WD40 repeat protein [G 99.1 9.8E-09 2.1E-13 85.5 16.4 213 45-277 49-301 (703)
255 PF15492 Nbas_N: Neuroblastoma 99.1 1.2E-06 2.7E-11 67.4 26.4 242 8-280 2-261 (282)
256 KOG4547 WD40 repeat-containing 99.1 4.2E-08 9.1E-13 81.9 19.8 193 57-279 3-221 (541)
257 PF00400 WD40: WD domain, G-be 99.1 5.7E-10 1.2E-14 60.9 6.1 38 38-75 2-39 (39)
258 PRK00178 tolB translocation pr 99.0 5.8E-07 1.3E-11 76.9 26.1 127 27-170 181-314 (430)
259 KOG3914 WD repeat protein WDR4 99.0 1.4E-08 3E-13 81.1 14.4 158 6-177 65-227 (390)
260 PF04762 IKI3: IKI3 family; I 99.0 3.4E-07 7.4E-12 84.3 25.4 244 4-277 76-378 (928)
261 KOG1064 RAVE (regulator of V-A 99.0 8E-10 1.7E-14 102.5 8.3 144 4-173 2252-2398(2439)
262 PRK04792 tolB translocation pr 99.0 3.5E-07 7.5E-12 78.4 23.9 213 26-277 199-424 (448)
263 COG5170 CDC55 Serine/threonine 99.0 1.5E-08 3.3E-13 78.5 13.7 221 3-228 26-311 (460)
264 KOG0309 Conserved WD40 repeat- 99.0 5.4E-09 1.2E-13 89.5 11.3 252 6-279 70-340 (1081)
265 KOG0882 Cyclophilin-related pe 98.9 2.6E-08 5.6E-13 80.8 12.8 163 1-173 7-174 (558)
266 KOG4547 WD40 repeat-containing 98.9 8.1E-08 1.8E-12 80.3 16.1 145 15-173 70-220 (541)
267 TIGR02658 TTQ_MADH_Hv methylam 98.9 9.8E-06 2.1E-10 66.3 27.7 246 11-280 53-332 (352)
268 PRK01029 tolB translocation pr 98.9 3.1E-07 6.7E-12 78.2 19.1 157 7-173 234-403 (428)
269 PF02239 Cytochrom_D1: Cytochr 98.9 3.2E-06 6.9E-11 70.4 24.6 143 18-171 9-156 (369)
270 PF00400 WD40: WD domain, G-be 98.9 1.5E-08 3.2E-13 55.2 6.5 38 83-120 2-39 (39)
271 COG2706 3-carboxymuconate cycl 98.9 1.2E-05 2.5E-10 64.0 24.8 244 24-278 15-274 (346)
272 PLN02919 haloacid dehalogenase 98.8 3.6E-05 7.8E-10 72.5 29.8 263 8-279 572-889 (1057)
273 KOG4532 WD40-like repeat conta 98.8 1.6E-06 3.5E-11 66.1 16.8 149 18-174 131-283 (344)
274 KOG2314 Translation initiation 98.8 6.3E-06 1.4E-10 69.0 21.6 140 7-161 214-364 (698)
275 KOG2695 WD40 repeat protein [G 98.8 3.4E-08 7.4E-13 77.6 7.7 120 4-124 253-378 (425)
276 KOG4532 WD40-like repeat conta 98.8 3.7E-06 7.9E-11 64.3 18.2 175 16-209 85-262 (344)
277 KOG3914 WD repeat protein WDR4 98.8 4.7E-07 1E-11 72.5 14.1 160 51-231 66-228 (390)
278 KOG4714 Nucleoporin [Nuclear s 98.7 3.4E-07 7.3E-12 69.4 12.1 148 14-173 100-254 (319)
279 KOG0309 Conserved WD40 repeat- 98.7 1.2E-07 2.7E-12 81.5 10.4 212 2-226 113-339 (1081)
280 PF11768 DUF3312: Protein of u 98.7 1.6E-06 3.4E-11 73.2 16.5 137 27-176 186-332 (545)
281 KOG4190 Uncharacterized conser 98.7 1E-07 2.3E-12 79.5 9.4 176 40-229 728-909 (1034)
282 KOG4190 Uncharacterized conser 98.7 8.3E-08 1.8E-12 80.0 8.2 169 2-176 734-909 (1034)
283 COG4946 Uncharacterized protei 98.7 0.00013 2.8E-09 60.4 25.3 116 2-123 358-478 (668)
284 KOG2041 WD40 repeat protein [G 98.7 2.3E-06 5E-11 73.8 16.0 248 2-278 70-337 (1189)
285 COG5170 CDC55 Serine/threonine 98.6 6.5E-07 1.4E-11 69.7 11.6 226 47-279 26-310 (460)
286 PF15492 Nbas_N: Neuroblastoma 98.6 1.5E-05 3.3E-10 61.6 18.5 164 7-173 47-259 (282)
287 PLN02919 haloacid dehalogenase 98.6 1E-05 2.2E-10 76.2 21.3 163 7-175 686-890 (1057)
288 KOG1920 IkappaB kinase complex 98.6 6.9E-05 1.5E-09 68.5 23.8 200 4-226 69-322 (1265)
289 KOG4714 Nucleoporin [Nuclear s 98.5 5.9E-07 1.3E-11 68.1 8.4 73 4-77 180-254 (319)
290 PF11768 DUF3312: Protein of u 98.5 1.4E-06 3.1E-11 73.5 11.0 113 7-124 209-331 (545)
291 KOG2695 WD40 repeat protein [G 98.5 1.9E-06 4.1E-11 68.0 10.7 148 63-229 228-379 (425)
292 KOG2315 Predicted translation 98.5 5.7E-06 1.2E-10 69.2 13.1 112 3-124 270-392 (566)
293 KOG1008 Uncharacterized conser 98.4 3.3E-07 7.1E-12 77.8 5.4 205 5-226 58-275 (783)
294 KOG2315 Predicted translation 98.4 4E-05 8.6E-10 64.3 17.0 145 9-173 223-390 (566)
295 KOG2314 Translation initiation 98.4 0.00021 4.6E-09 60.2 20.6 249 4-278 250-573 (698)
296 PRK04043 tolB translocation pr 98.4 0.0005 1.1E-08 58.5 23.6 141 5-164 189-339 (419)
297 KOG2114 Vacuolar assembly/sort 98.4 0.00011 2.5E-09 64.9 19.7 196 10-226 30-243 (933)
298 KOG2066 Vacuolar assembly/sort 98.4 2E-05 4.2E-10 68.9 14.8 189 4-226 40-233 (846)
299 KOG1645 RING-finger-containing 98.3 0.00012 2.6E-09 59.2 16.9 77 1-80 191-269 (463)
300 KOG2066 Vacuolar assembly/sort 98.3 4.4E-05 9.6E-10 66.8 15.4 145 14-173 82-233 (846)
301 KOG1920 IkappaB kinase complex 98.3 0.00044 9.6E-09 63.5 22.2 209 47-279 68-323 (1265)
302 KOG2114 Vacuolar assembly/sort 98.2 0.00048 1E-08 61.1 19.5 201 55-278 31-243 (933)
303 PF08450 SGL: SMP-30/Gluconola 98.2 0.0016 3.5E-08 51.3 28.7 224 8-267 4-245 (246)
304 KOG1008 Uncharacterized conser 98.2 9.2E-07 2E-11 75.1 2.9 208 48-278 57-275 (783)
305 COG5354 Uncharacterized protei 98.1 0.00067 1.4E-08 56.7 18.0 235 5-278 34-306 (561)
306 KOG1275 PAB-dependent poly(A) 98.1 3.9E-05 8.4E-10 68.1 11.1 145 14-171 186-340 (1118)
307 COG4946 Uncharacterized protei 98.0 0.0015 3.1E-08 54.5 18.2 148 11-176 327-480 (668)
308 smart00320 WD40 WD40 repeats. 98.0 1.7E-05 3.6E-10 42.0 5.1 37 39-75 4-40 (40)
309 PRK04043 tolB translocation pr 98.0 0.0014 3.1E-08 55.8 18.0 138 6-163 235-387 (419)
310 COG5354 Uncharacterized protei 97.9 0.0003 6.5E-09 58.7 12.4 137 3-165 274-421 (561)
311 KOG4640 Anaphase-promoting com 97.9 9E-05 1.9E-09 63.3 9.4 73 5-80 22-95 (665)
312 KOG3617 WD40 and TPR repeat-co 97.9 0.0007 1.5E-08 60.2 14.7 108 8-122 20-131 (1416)
313 KOG3621 WD40 repeat-containing 97.9 0.00012 2.5E-09 63.4 9.6 119 4-123 34-155 (726)
314 PF08450 SGL: SMP-30/Gluconola 97.8 0.0086 1.9E-07 47.2 24.0 161 6-173 42-213 (246)
315 KOG0882 Cyclophilin-related pe 97.8 0.00024 5.3E-09 58.4 10.4 173 2-176 52-234 (558)
316 smart00320 WD40 WD40 repeats. 97.7 0.00011 2.5E-09 38.5 5.1 37 84-120 4-40 (40)
317 KOG1645 RING-finger-containing 97.6 0.0038 8.2E-08 50.9 14.2 80 42-125 188-269 (463)
318 TIGR03300 assembly_YfgL outer 97.6 0.03 6.4E-07 47.2 21.7 226 15-279 105-339 (377)
319 TIGR02658 TTQ_MADH_Hv methylam 97.6 0.027 5.9E-07 46.5 26.8 96 25-124 27-138 (352)
320 KOG1832 HIV-1 Vpr-binding prot 97.6 0.0001 2.2E-09 65.6 4.8 155 2-174 1100-1256(1516)
321 KOG3621 WD40 repeat-containing 97.5 0.0011 2.3E-08 57.7 10.1 123 47-174 33-155 (726)
322 KOG1275 PAB-dependent poly(A) 97.5 0.0051 1.1E-07 55.4 14.2 182 60-276 148-340 (1118)
323 KOG3617 WD40 and TPR repeat-co 97.5 0.00033 7.1E-09 62.2 6.6 107 53-173 21-131 (1416)
324 KOG1912 WD40 repeat protein [G 97.4 0.066 1.4E-06 47.8 19.9 151 5-171 17-184 (1062)
325 KOG1912 WD40 repeat protein [G 97.3 0.02 4.3E-07 50.9 15.6 115 2-121 54-185 (1062)
326 KOG1832 HIV-1 Vpr-binding prot 97.3 0.00025 5.5E-09 63.2 4.4 125 36-176 1090-1217(1516)
327 PF06977 SdiA-regulated: SdiA- 97.3 0.058 1.2E-06 42.4 22.9 167 4-173 22-201 (248)
328 TIGR03300 assembly_YfgL outer 97.3 0.09 2E-06 44.3 22.6 220 15-275 145-376 (377)
329 PF07433 DUF1513: Protein of u 97.2 0.074 1.6E-06 42.7 21.4 186 10-218 57-278 (305)
330 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.032 7E-07 37.4 13.7 100 6-117 2-109 (111)
331 PF10647 Gmad1: Lipoprotein Lp 97.1 0.092 2E-06 41.6 17.9 154 5-165 25-187 (253)
332 PF14783 BBS2_Mid: Ciliary BBS 97.1 0.04 8.6E-07 37.0 13.2 100 50-168 2-109 (111)
333 KOG2079 Vacuolar assembly/sort 97.1 0.0039 8.5E-08 57.0 9.3 98 14-115 98-198 (1206)
334 KOG4640 Anaphase-promoting com 97.0 0.0049 1.1E-07 53.1 8.8 74 48-125 21-95 (665)
335 PF12894 Apc4_WD40: Anaphase-p 97.0 0.0031 6.8E-08 35.3 5.2 30 4-33 12-41 (47)
336 PF03178 CPSF_A: CPSF A subuni 97.0 0.14 3.1E-06 42.1 17.2 113 3-122 88-202 (321)
337 PF00930 DPPIV_N: Dipeptidyl p 97.0 0.17 3.6E-06 42.4 21.5 71 4-76 43-130 (353)
338 PF04053 Coatomer_WDAD: Coatom 97.0 0.2 4.3E-06 43.1 20.6 225 6-278 35-262 (443)
339 PF00930 DPPIV_N: Dipeptidyl p 96.9 0.19 4.2E-06 42.0 19.3 102 12-119 1-128 (353)
340 PRK13616 lipoprotein LpqB; Pro 96.8 0.12 2.6E-06 46.1 16.2 161 5-172 351-524 (591)
341 PF13360 PQQ_2: PQQ-like domai 96.8 0.16 3.5E-06 39.5 24.6 142 24-177 2-144 (238)
342 PF12894 Apc4_WD40: Anaphase-p 96.8 0.0055 1.2E-07 34.3 5.0 30 92-121 11-40 (47)
343 PRK13616 lipoprotein LpqB; Pro 96.7 0.27 5.8E-06 44.0 17.5 169 46-226 348-525 (591)
344 COG0823 TolB Periplasmic compo 96.7 0.081 1.8E-06 45.2 13.5 143 6-163 195-345 (425)
345 PF08553 VID27: VID27 cytoplas 96.6 0.21 4.7E-06 45.7 16.5 139 66-225 501-646 (794)
346 PF08596 Lgl_C: Lethal giant l 96.6 0.36 7.8E-06 40.9 22.5 116 5-122 3-173 (395)
347 PF14870 PSII_BNR: Photosynthe 96.6 0.3 6.4E-06 39.6 16.3 155 4-170 145-301 (302)
348 COG0823 TolB Periplasmic compo 96.5 0.046 9.9E-07 46.7 10.9 100 8-112 242-345 (425)
349 KOG2444 WD40 repeat protein [G 96.5 0.013 2.9E-07 44.3 6.7 104 15-122 70-177 (238)
350 PRK02888 nitrous-oxide reducta 96.4 0.2 4.3E-06 44.4 14.3 74 48-123 321-405 (635)
351 PRK02888 nitrous-oxide reducta 96.4 0.32 6.9E-06 43.2 15.5 74 95-173 323-404 (635)
352 KOG4441 Proteins containing BT 96.4 0.68 1.5E-05 41.4 19.5 223 14-271 284-534 (571)
353 PF04841 Vps16_N: Vps16, N-ter 96.4 0.55 1.2E-05 40.1 19.0 154 4-175 81-248 (410)
354 PF03178 CPSF_A: CPSF A subuni 96.3 0.47 1E-05 39.0 24.4 146 15-173 42-202 (321)
355 PF04053 Coatomer_WDAD: Coatom 96.2 0.26 5.7E-06 42.3 14.0 138 15-173 117-262 (443)
356 PF07433 DUF1513: Protein of u 96.2 0.49 1.1E-05 38.2 23.8 99 8-110 9-116 (305)
357 TIGR02604 Piru_Ver_Nterm putat 96.2 0.6 1.3E-05 39.3 15.9 104 5-111 15-142 (367)
358 PF12234 Rav1p_C: RAVE protein 96.2 0.26 5.7E-06 43.9 13.9 106 12-120 38-154 (631)
359 PF13360 PQQ_2: PQQ-like domai 96.1 0.45 9.7E-06 37.0 21.6 107 14-124 35-142 (238)
360 PHA02713 hypothetical protein; 96.0 0.6 1.3E-05 41.7 15.8 63 14-78 303-376 (557)
361 KOG4441 Proteins containing BT 95.9 0.51 1.1E-05 42.2 14.8 147 14-174 332-500 (571)
362 COG3204 Uncharacterized protei 95.8 0.77 1.7E-05 36.6 16.5 169 4-173 86-263 (316)
363 KOG2079 Vacuolar assembly/sort 95.8 0.07 1.5E-06 49.4 8.7 71 3-77 130-203 (1206)
364 PRK11138 outer membrane biogen 95.7 1.1 2.4E-05 38.0 21.2 180 61-277 207-393 (394)
365 PF15390 DUF4613: Domain of un 95.7 0.84 1.8E-05 40.0 14.4 118 47-172 56-185 (671)
366 PHA02713 hypothetical protein; 95.4 0.56 1.2E-05 41.9 13.3 147 14-173 351-533 (557)
367 PF08596 Lgl_C: Lethal giant l 95.4 1.5 3.2E-05 37.3 18.8 160 3-172 86-289 (395)
368 PF12234 Rav1p_C: RAVE protein 95.3 1.4 3E-05 39.5 15.1 118 49-172 31-155 (631)
369 PF10647 Gmad1: Lipoprotein Lp 95.3 0.85 1.8E-05 36.1 12.6 110 5-114 67-187 (253)
370 PF00780 CNH: CNH domain; Int 95.1 1.3 2.9E-05 35.3 24.8 148 13-174 5-166 (275)
371 PF08553 VID27: VID27 cytoplas 94.9 1.5 3.2E-05 40.5 14.4 135 23-173 502-647 (794)
372 PRK13684 Ycf48-like protein; P 94.7 2.1 4.5E-05 35.5 17.4 155 4-171 173-329 (334)
373 PF06977 SdiA-regulated: SdiA- 94.7 1.7 3.6E-05 34.3 19.9 130 41-173 15-147 (248)
374 PF07995 GSDH: Glucose / Sorbo 94.6 1.3 2.9E-05 36.6 12.5 109 5-115 3-136 (331)
375 KOG2395 Protein involved in va 94.5 1.7 3.6E-05 37.7 12.8 143 63-225 350-499 (644)
376 PF10313 DUF2415: Uncharacteri 94.5 0.18 3.8E-06 27.5 4.8 31 249-279 2-34 (43)
377 PF10168 Nup88: Nuclear pore c 94.2 2.7 5.9E-05 38.6 14.4 76 48-124 85-181 (717)
378 PF07995 GSDH: Glucose / Sorbo 93.8 2.1 4.5E-05 35.5 12.2 51 51-103 5-59 (331)
379 KOG2444 WD40 repeat protein [G 93.8 0.26 5.5E-06 37.6 6.1 105 59-173 70-177 (238)
380 PF14583 Pectate_lyase22: Olig 93.6 3.9 8.5E-05 34.3 17.6 27 252-278 355-381 (386)
381 COG3386 Gluconolactonase [Carb 93.3 3.8 8.3E-05 33.5 23.6 230 11-269 32-277 (307)
382 KOG3630 Nuclear pore complex, 93.2 1.2 2.7E-05 42.0 10.4 147 6-161 103-261 (1405)
383 PF10313 DUF2415: Uncharacteri 93.2 0.43 9.2E-06 26.0 4.7 31 48-78 1-34 (43)
384 PRK11138 outer membrane biogen 93.1 4.9 0.00011 34.2 22.1 150 15-176 120-277 (394)
385 PF12657 TFIIIC_delta: Transcr 92.7 2.7 5.9E-05 31.1 10.2 29 93-121 86-120 (173)
386 PF08728 CRT10: CRT10; InterP 92.5 3.6 7.9E-05 37.5 12.1 115 6-121 103-245 (717)
387 PF14870 PSII_BNR: Photosynthe 92.3 5.4 0.00012 32.5 24.5 237 6-275 64-301 (302)
388 TIGR03606 non_repeat_PQQ dehyd 92.3 7 0.00015 33.9 13.6 55 5-59 31-90 (454)
389 PF04841 Vps16_N: Vps16, N-ter 92.0 7.3 0.00016 33.4 24.5 65 9-77 34-109 (410)
390 KOG2395 Protein involved in va 91.9 2.5 5.4E-05 36.7 9.9 108 5-116 377-495 (644)
391 PF05694 SBP56: 56kDa selenium 91.7 7.7 0.00017 33.2 13.8 157 12-173 138-342 (461)
392 PF15390 DUF4613: Domain of un 91.7 3.3 7.2E-05 36.5 10.6 125 143-277 56-185 (671)
393 COG3391 Uncharacterized conser 91.5 7.9 0.00017 32.8 19.0 156 7-173 119-283 (381)
394 PF10168 Nup88: Nuclear pore c 91.3 4.5 9.8E-05 37.3 11.7 79 4-82 85-184 (717)
395 PHA03098 kelch-like protein; P 90.7 12 0.00025 33.4 18.1 62 14-77 294-366 (534)
396 PF07676 PD40: WD40-like Beta 90.7 1.2 2.6E-05 23.5 4.8 28 248-275 9-38 (39)
397 KOG1916 Nuclear protein, conta 90.6 0.51 1.1E-05 43.4 5.0 113 11-132 191-328 (1283)
398 KOG1900 Nuclear pore complex, 90.6 3.9 8.4E-05 39.5 10.7 148 22-174 96-273 (1311)
399 KOG4649 PQQ (pyrrolo-quinoline 90.2 7.9 0.00017 30.6 11.7 102 15-123 23-124 (354)
400 KOG4649 PQQ (pyrrolo-quinoline 90.2 7.9 0.00017 30.6 22.7 96 15-116 63-159 (354)
401 KOG1916 Nuclear protein, conta 89.8 0.21 4.5E-06 45.7 2.0 120 43-174 128-266 (1283)
402 KOG2377 Uncharacterized conser 89.3 3.4 7.4E-05 35.3 8.5 102 3-108 66-169 (657)
403 TIGR03606 non_repeat_PQQ dehyd 89.1 14 0.00031 32.0 13.8 55 49-104 31-90 (454)
404 PF14655 RAB3GAP2_N: Rab3 GTPa 89.1 4 8.7E-05 34.8 9.0 77 97-173 6-97 (415)
405 PF05096 Glu_cyclase_2: Glutam 88.7 11 0.00023 30.1 18.2 114 46-174 41-158 (264)
406 PF05694 SBP56: 56kDa selenium 88.2 16 0.00034 31.4 15.3 103 23-125 220-345 (461)
407 COG5290 IkappaB kinase complex 88.0 22 0.00049 32.9 14.9 71 145-225 248-323 (1243)
408 PF12657 TFIIIC_delta: Transcr 87.8 4.3 9.3E-05 30.0 7.6 30 249-278 87-121 (173)
409 COG3204 Uncharacterized protei 87.6 13 0.00029 29.9 20.5 128 43-173 81-210 (316)
410 KOG2377 Uncharacterized conser 87.6 11 0.00025 32.3 10.4 96 69-171 43-138 (657)
411 KOG1900 Nuclear pore complex, 87.5 17 0.00037 35.4 12.5 34 245-279 240-273 (1311)
412 PHA03098 kelch-like protein; P 87.3 21 0.00045 31.8 15.0 63 14-78 342-415 (534)
413 PHA02790 Kelch-like protein; P 87.1 20 0.00044 31.5 18.0 104 14-122 271-384 (480)
414 KOG3630 Nuclear pore complex, 87.1 18 0.0004 34.8 12.2 116 49-173 102-228 (1405)
415 PF02897 Peptidase_S9_N: Proly 86.1 21 0.00045 30.6 28.0 114 6-123 126-261 (414)
416 PF11715 Nup160: Nucleoporin N 85.7 4.3 9.3E-05 36.3 7.8 68 13-81 156-252 (547)
417 KOG4460 Nuclear pore complex, 85.7 11 0.00025 32.9 9.6 92 5-123 105-199 (741)
418 PF02897 Peptidase_S9_N: Proly 85.6 22 0.00047 30.4 20.2 103 51-162 127-245 (414)
419 PF07569 Hira: TUP1-like enhan 85.1 8.2 0.00018 29.9 8.1 75 100-175 18-97 (219)
420 COG5308 NUP170 Nuclear pore co 84.7 20 0.00043 33.7 11.1 156 67-229 100-278 (1263)
421 PF07569 Hira: TUP1-like enhan 84.3 11 0.00025 29.1 8.6 65 11-76 18-94 (219)
422 COG3391 Uncharacterized conser 84.3 25 0.00053 29.9 19.3 155 8-174 78-240 (381)
423 TIGR03118 PEPCTERM_chp_1 conse 83.5 23 0.00049 28.9 13.3 116 6-121 25-169 (336)
424 COG3490 Uncharacterized protei 83.3 5.3 0.00012 32.0 6.3 56 10-66 120-180 (366)
425 PF08728 CRT10: CRT10; InterP 82.8 26 0.00057 32.3 11.1 107 59-172 114-245 (717)
426 PHA02790 Kelch-like protein; P 82.2 35 0.00075 30.1 14.7 63 13-77 317-384 (480)
427 PF14655 RAB3GAP2_N: Rab3 GTPa 82.0 23 0.0005 30.4 10.1 69 8-76 6-96 (415)
428 KOG4460 Nuclear pore complex, 81.6 37 0.0008 30.0 11.9 28 146-173 168-198 (741)
429 PF06433 Me-amine-dh_H: Methyl 81.2 30 0.00065 28.7 19.0 31 249-279 290-321 (342)
430 KOG2247 WD40 repeat-containing 81.2 0.23 4.9E-06 42.3 -1.8 143 9-169 40-184 (615)
431 PF11715 Nup160: Nucleoporin N 81.0 11 0.00023 33.8 8.3 69 57-125 156-251 (547)
432 PLN00033 photosystem II stabil 80.2 37 0.0008 29.1 18.1 150 7-169 242-395 (398)
433 KOG1983 Tomosyn and related SN 79.4 60 0.0013 31.6 12.9 27 6-32 38-64 (993)
434 TIGR03547 muta_rot_YjhT mutatr 79.3 35 0.00077 28.3 13.0 43 25-68 168-210 (346)
435 PF14761 HPS3_N: Hermansky-Pud 78.9 11 0.00024 28.9 6.5 52 13-65 25-77 (215)
436 KOG3522 Predicted guanine nucl 77.0 44 0.00096 31.2 10.5 146 17-174 549-698 (925)
437 PF12768 Rax2: Cortical protei 74.6 44 0.00095 27.0 10.5 61 3-63 36-105 (281)
438 PF01436 NHL: NHL repeat; Int 74.4 8.2 0.00018 18.6 3.6 23 51-73 5-27 (28)
439 KOG4499 Ca2+-binding protein R 74.4 40 0.00086 26.4 15.3 101 96-208 161-264 (310)
440 PF14727 PHTB1_N: PTHB1 N-term 74.0 58 0.0012 28.1 11.1 113 155-277 37-162 (418)
441 PF07250 Glyoxal_oxid_N: Glyox 74.0 42 0.0009 26.5 11.2 139 27-173 48-197 (243)
442 TIGR02276 beta_rpt_yvtn 40-res 73.7 8.1 0.00018 20.3 3.6 22 257-278 1-22 (42)
443 PF01731 Arylesterase: Arylest 73.3 9 0.0002 24.6 4.2 30 249-278 55-84 (86)
444 PF14727 PHTB1_N: PTHB1 N-term 73.2 61 0.0013 28.0 25.5 146 16-172 38-203 (418)
445 TIGR02604 Piru_Ver_Nterm putat 72.1 59 0.0013 27.4 16.2 111 50-162 16-142 (367)
446 COG5290 IkappaB kinase complex 72.0 8.4 0.00018 35.4 5.0 107 8-118 251-363 (1243)
447 COG5308 NUP170 Nuclear pore co 69.6 1.1E+02 0.0023 29.3 13.0 147 22-173 99-275 (1263)
448 COG3490 Uncharacterized protei 68.5 62 0.0014 26.2 9.7 56 54-111 120-180 (366)
449 COG5167 VID27 Protein involved 68.1 21 0.00045 31.3 6.3 61 14-77 572-632 (776)
450 PF14761 HPS3_N: Hermansky-Pud 67.2 56 0.0012 25.2 15.2 51 105-163 29-79 (215)
451 KOG1897 Damage-specific DNA bi 66.9 1.2E+02 0.0027 29.1 22.2 77 46-122 529-613 (1096)
452 COG5167 VID27 Protein involved 64.8 23 0.00051 31.0 6.0 61 207-278 572-632 (776)
453 KOG2247 WD40 repeat-containing 63.7 1.7 3.7E-05 37.3 -0.7 142 51-218 38-180 (615)
454 COG3386 Gluconolactonase [Carb 62.3 88 0.0019 25.7 17.2 119 49-173 112-243 (307)
455 KOG3616 Selective LIM binding 62.0 22 0.00047 32.8 5.5 32 4-35 15-46 (1636)
456 PF00780 CNH: CNH domain; Int 61.9 79 0.0017 25.1 16.3 61 58-124 6-66 (275)
457 COG4590 ABC-type uncharacteriz 59.7 67 0.0015 27.9 7.7 156 5-174 222-387 (733)
458 KOG4499 Ca2+-binding protein R 59.0 87 0.0019 24.7 7.5 45 10-56 218-262 (310)
459 PRK10115 protease 2; Provision 58.7 1.6E+02 0.0034 27.5 22.5 112 6-122 129-255 (686)
460 PLN02153 epithiospecifier prot 58.0 1.1E+02 0.0024 25.4 13.4 28 14-41 137-175 (341)
461 PF08954 DUF1900: Domain of un 56.3 59 0.0013 23.0 6.0 51 6-57 13-66 (136)
462 PRK13684 Ycf48-like protein; P 56.2 1.2E+02 0.0026 25.3 25.5 232 4-273 46-283 (334)
463 PF12341 DUF3639: Protein of u 54.5 25 0.00054 17.0 3.5 26 248-276 2-27 (27)
464 PF06739 SBBP: Beta-propeller 53.5 32 0.00068 18.0 3.3 22 4-25 13-34 (38)
465 PF01344 Kelch_1: Kelch motif; 52.4 36 0.00079 18.3 3.8 28 13-40 10-43 (47)
466 PF14269 Arylsulfotran_2: Aryl 52.0 1.1E+02 0.0024 25.0 7.8 69 6-76 146-219 (299)
467 COG3823 Glutamine cyclotransfe 51.8 1.1E+02 0.0024 23.7 13.5 24 244-267 225-248 (262)
468 cd00216 PQQ_DH Dehydrogenases 51.7 1.7E+02 0.0037 25.8 15.1 141 10-177 223-428 (488)
469 PF12768 Rax2: Cortical protei 51.6 1.3E+02 0.0028 24.4 9.4 54 23-78 14-73 (281)
470 PRK14131 N-acetylneuraminic ac 49.7 1.6E+02 0.0035 24.9 10.8 41 26-67 190-230 (376)
471 TIGR02608 delta_60_rpt delta-6 49.5 51 0.0011 19.1 5.0 19 49-67 2-20 (55)
472 PF03088 Str_synth: Strictosid 48.9 72 0.0016 20.7 6.7 55 8-65 2-74 (89)
473 cd03444 Thioesterase_II_repeat 48.7 72 0.0016 21.2 5.3 58 107-166 46-103 (104)
474 PF13964 Kelch_6: Kelch motif 46.7 29 0.00063 19.2 2.7 28 13-40 10-43 (50)
475 TIGR03547 muta_rot_YjhT mutatr 45.2 1.8E+02 0.0039 24.1 17.9 53 14-68 63-128 (346)
476 KOG1896 mRNA cleavage and poly 44.2 3.4E+02 0.0074 27.1 16.0 145 16-173 1047-1213(1366)
477 TIGR03548 mutarot_permut cycli 44.0 1.8E+02 0.0039 23.9 10.5 64 14-78 123-195 (323)
478 PF08801 Nucleoporin_N: Nup133 42.8 2.2E+02 0.0048 24.5 14.0 30 145-174 191-220 (422)
479 COG5276 Uncharacterized conser 42.4 1.9E+02 0.0042 23.7 16.9 142 7-161 90-231 (370)
480 KOG3611 Semaphorins [Signal tr 42.3 3E+02 0.0066 26.0 10.5 76 92-169 407-489 (737)
481 PF14781 BBS2_N: Ciliary BBSom 41.6 1.3E+02 0.0027 21.4 11.4 108 8-121 3-124 (136)
482 PF10584 Proteasome_A_N: Prote 41.6 6.3 0.00014 18.2 -0.5 7 11-17 8-14 (23)
483 TIGR00189 tesB acyl-CoA thioes 41.1 1.1E+02 0.0024 24.4 6.2 59 107-167 212-270 (271)
484 PRK13615 lipoprotein LpqB; Pro 40.3 2.9E+02 0.0062 25.1 15.9 147 7-161 337-487 (557)
485 PRK10526 acyl-CoA thioesterase 37.7 1.7E+02 0.0036 23.8 6.8 61 107-169 224-284 (286)
486 KOG2467 Glycine/serine hydroxy 36.8 33 0.00071 28.8 2.5 22 58-79 340-361 (477)
487 PF07646 Kelch_2: Kelch motif; 36.8 75 0.0016 17.4 3.5 29 10-38 7-43 (49)
488 COG4880 Secreted protein conta 35.1 3.1E+02 0.0066 23.9 8.8 93 26-124 407-505 (603)
489 KOG3616 Selective LIM binding 33.4 1.2E+02 0.0025 28.5 5.5 32 48-79 15-46 (1636)
490 PF11725 AvrE: Pathogenicity f 33.2 3.3E+02 0.0072 28.3 8.7 153 2-172 361-515 (1774)
491 PRK14131 N-acetylneuraminic ac 32.9 3E+02 0.0066 23.2 15.6 53 14-68 84-149 (376)
492 PLN02153 epithiospecifier prot 32.6 2.9E+02 0.0063 22.9 15.0 64 14-78 85-168 (341)
493 PRK10526 acyl-CoA thioesterase 32.5 1.9E+02 0.0042 23.4 6.4 57 62-118 224-284 (286)
494 COG4257 Vgb Streptogramin lyas 31.6 2.9E+02 0.0062 22.6 13.7 72 92-173 147-218 (353)
495 PF13449 Phytase-like: Esteras 31.3 3E+02 0.0066 22.7 12.8 99 9-108 90-230 (326)
496 KOG2109 WD40 repeat protein [G 30.8 31 0.00068 31.2 1.6 75 40-114 308-390 (788)
497 PF08954 DUF1900: Domain of un 30.2 2E+02 0.0044 20.4 5.6 51 52-103 15-67 (136)
498 PF13570 PQQ_3: PQQ-like domai 29.9 89 0.0019 16.2 3.2 19 15-33 21-39 (40)
499 TIGR03548 mutarot_permut cycli 29.8 3.1E+02 0.0068 22.4 14.7 64 58-123 123-195 (323)
500 COG1946 TesB Acyl-CoA thioeste 29.8 2.9E+02 0.0063 22.5 6.6 62 106-169 223-284 (289)
No 1
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.9e-49 Score=293.79 Aligned_cols=252 Identities=60% Similarity=1.111 Sum_probs=227.1
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|++.|+.++|+|.|++||+||.|.++.||....++++++.+++||..+|.|++|+++|++||+++.|++|.+|.+..+.+
T Consensus 60 hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE 139 (312)
T KOG0645|consen 60 HKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE 139 (312)
T ss_pred chheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
+++..+++.|...|..+.|||+..+|+++|.|++||+|+-+. .+.|.+++++. +|...|++++|++.|..|++|
T Consensus 140 fec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~--dddW~c~~tl~----g~~~TVW~~~F~~~G~rl~s~ 213 (312)
T KOG0645|consen 140 FECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED--DDDWECVQTLD----GHENTVWSLAFDNIGSRLVSC 213 (312)
T ss_pred EEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecC--CCCeeEEEEec----CccceEEEEEecCCCceEEEe
Confidence 999999999999999999999999999999999999997664 45688888775 788899999999999999999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLK 241 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 241 (281)
+.|++++||... +.++..|.+++..+.|. ++.+++++.|+.+++|... +-.+.+.++.+..
T Consensus 214 sdD~tv~Iw~~~----------------~~~~~~~sr~~Y~v~W~-~~~IaS~ggD~~i~lf~~s--~~~d~p~~~l~~~ 274 (312)
T KOG0645|consen 214 SDDGTVSIWRLY----------------TDLSGMHSRALYDVPWD-NGVIASGGGDDAIRLFKES--DSPDEPSWNLLAK 274 (312)
T ss_pred cCCcceEeeeec----------------cCcchhcccceEeeeec-ccceEeccCCCEEEEEEec--CCCCCchHHHHHh
Confidence 999999999421 23345578889999998 8999999999999999765 2234566666677
Q ss_pred eccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 242 KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 242 ~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
....|+..|+++.|+|..+.+|++|++||.|++|++.
T Consensus 275 ~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 275 KEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred hhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 7889999999999999767789999999999999975
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.6e-42 Score=267.16 Aligned_cols=254 Identities=29% Similarity=0.523 Sum_probs=204.1
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|.+++|+|+|+.||||+.|.++++||..+.. +.++.++|..-|.|++|+|||..||+|+.||+|++||-..+++
T Consensus 114 H~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeT--p~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~ 191 (480)
T KOG0271|consen 114 HGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTET--PLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ 191 (480)
T ss_pred CCCcEEEEEecCCCceEEecCCCceEEeeccCCCC--cceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCc
Confidence 78899999999999999999999999999998764 5789999999999999999999999999999999999877764
Q ss_pred eEEeEeecCCccceeEEEecCC-----CCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCC
Q 023500 82 FECVSVLQGHAQDVKMVQWHPT-----MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD 156 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~-----~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 156 (281)
.-..+.+|...|++++|.|- ...++++|.||+|+|||+... .++..+ .+|+.+|+|++|-.++
T Consensus 192 --~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~-----~~~~~l----sgHT~~VTCvrwGG~g- 259 (480)
T KOG0271|consen 192 --IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG-----TCVRTL----SGHTASVTCVRWGGEG- 259 (480)
T ss_pred --ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc-----eEEEEe----ccCccceEEEEEcCCc-
Confidence 35678999999999999874 458999999999999987653 244444 5999999999997665
Q ss_pred EEEEeeCCCcEEEEeCCccccc---------------------------cCCCC--------------------------
Q 023500 157 KLVSCSDDLTIKIWGADITRMQ---------------------------SGDGY-------------------------- 183 (281)
Q Consensus 157 ~l~s~~~d~~i~~w~~~~~~~~---------------------------~~~~~-------------------------- 183 (281)
++++|+.|++|++|+...+.+- .....
T Consensus 260 liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erl 339 (480)
T KOG0271|consen 260 LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERL 339 (480)
T ss_pred eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCccee
Confidence 9999999999999975421100 00000
Q ss_pred -------c--ccc------eeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCC
Q 023500 184 -------A--SWR------HLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHD 247 (281)
Q Consensus 184 -------~--~~~------~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 247 (281)
. .|+ ++..+. .|...|..+.|+|++ ++++++-|+++++|+-..+ .++...++|-
T Consensus 340 VSgsDd~tlflW~p~~~kkpi~rmt-gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG---------k~lasfRGHv 409 (480)
T KOG0271|consen 340 VSGSDDFTLFLWNPFKSKKPITRMT-GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG---------KFLASFRGHV 409 (480)
T ss_pred EEecCCceEEEecccccccchhhhh-chhhheeeEEECCCccEEEEeecccceeeeeCCCc---------chhhhhhhcc
Confidence 0 000 011111 256678899999987 5788889999999965432 3456678999
Q ss_pred CCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 248 MDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 248 ~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
..|..++|+.+. +++++||.|.+|++|+++..
T Consensus 410 ~~VYqvawsaDs-RLlVS~SkDsTLKvw~V~tk 441 (480)
T KOG0271|consen 410 AAVYQVAWSADS-RLLVSGSKDSTLKVWDVRTK 441 (480)
T ss_pred ceeEEEEeccCc-cEEEEcCCCceEEEEEeeee
Confidence 999999999986 58999999999999998753
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1e-42 Score=272.15 Aligned_cols=241 Identities=27% Similarity=0.452 Sum_probs=207.6
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCC--CCEEEEecCCCcEEEEEecCCC
Q 023500 3 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS--GTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
+++|..+.|++++++|||||++|.+++|+.... ..+.++.||...|-++.|+|. +..|+||+.||++++|++.+..
T Consensus 175 ~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~--~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 175 TRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC--NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred CCcceeeEeecCCCeEEEeecCCceeEeecCCc--ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 478999999999999999999999999987655 457789999999999999996 5689999999999999997653
Q ss_pred eeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
++..+.+|...|..|+|||+|++|+|+|.|.+.++||++.... .....||...|.+++|+|||.+++|
T Consensus 253 ---~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E---------lL~QEGHs~~v~~iaf~~DGSL~~t 320 (459)
T KOG0272|consen 253 ---PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE---------LLLQEGHSKGVFSIAFQPDGSLAAT 320 (459)
T ss_pred ---chhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh---------hHhhcccccccceeEecCCCceeec
Confidence 4667899999999999999999999999999999999986531 1223699999999999999999999
Q ss_pred eeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce-eeecCCCCcEEEEecccCCCcCCccceee
Q 023500 161 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKML 239 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 239 (281)
|+.|..-++||++.+. .+..+. .|..+|.++.|+|+|+ +++|+.|+++++|++.+.. .
T Consensus 321 GGlD~~~RvWDlRtgr-----------~im~L~-gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~---------~ 379 (459)
T KOG0272|consen 321 GGLDSLGRVWDLRTGR-----------CIMFLA-GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRS---------E 379 (459)
T ss_pred cCccchhheeecccCc-----------EEEEec-ccccceeeEeECCCceEEeecCCCCcEEEeeecccc---------c
Confidence 9999999999998653 233333 4899999999999986 8889999999999876531 2
Q ss_pred eeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 240 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 240 ~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
.....+|..-|+.+.|+|+..++|+|+|.|++++||.-.
T Consensus 380 ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~ 418 (459)
T KOG0272|consen 380 LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTR 418 (459)
T ss_pred ceecccccchhhheEecccCCeEEEEcccCcceeeecCC
Confidence 344568999999999999777889999999999999854
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=9.1e-41 Score=261.27 Aligned_cols=239 Identities=28% Similarity=0.456 Sum_probs=205.6
Q ss_pred CccceeEEEEcCC--CCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCC
Q 023500 2 HTRTVRSCAWSPS--GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 2 h~~~i~~~~~~~~--~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~ 79 (281)
|+..|.++.|+|. +.-||||+.||+++||+..+. .++..+++|...|..++|+|+|++|+|++.|.+-++||+...
T Consensus 216 H~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e--~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk 293 (459)
T KOG0272|consen 216 HTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE--TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETK 293 (459)
T ss_pred cccceeeEEEccCCCccceeeeccCCceeeeccCCC--cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccc
Confidence 7889999999996 568999999999999987665 468899999999999999999999999999999999999766
Q ss_pred CeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEE
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV 159 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 159 (281)
.+ ..-..||...|.+++|+|+|.+++||+.|..-+|||+.+.+ ++..+. +|..+|..++|+|+|..|+
T Consensus 294 ~E---lL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr-----~im~L~----gH~k~I~~V~fsPNGy~lA 361 (459)
T KOG0272|consen 294 SE---LLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR-----CIMFLA----GHIKEILSVAFSPNGYHLA 361 (459)
T ss_pred hh---hHhhcccccccceeEecCCCceeeccCccchhheeecccCc-----EEEEec----ccccceeeEeECCCceEEe
Confidence 54 23357999999999999999999999999999999887653 555553 7999999999999999999
Q ss_pred EeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC-C-ceeeecCCCCcEEEEecccCCCcCCccce
Q 023500 160 SCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR-E-GIIASGAADDSVQFFVESKDDLIDGPSYK 237 (281)
Q Consensus 160 s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 237 (281)
||+.|++++|||++... .+.++. .|...|..+.++| . .++++++.|+++++|.... .
T Consensus 362 Tgs~Dnt~kVWDLR~r~-----------~ly~ip-AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~---------~ 420 (459)
T KOG0272|consen 362 TGSSDNTCKVWDLRMRS-----------ELYTIP-AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT---------W 420 (459)
T ss_pred ecCCCCcEEEeeecccc-----------cceecc-cccchhhheEecccCCeEEEEcccCcceeeecCCC---------c
Confidence 99999999999987543 233333 4788899999997 3 3789999999999995533 2
Q ss_pred eeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 238 MLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 238 ~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
..++...+|+..|.++..+|++. .++|++.|.++++|.
T Consensus 421 ~~~ksLaGHe~kV~s~Dis~d~~-~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 421 SPLKSLAGHEGKVISLDISPDSQ-AIATSSFDRTIKLWR 458 (459)
T ss_pred ccchhhcCCccceEEEEeccCCc-eEEEeccCceeeecc
Confidence 44566789999999999999876 688999999999995
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-39 Score=252.53 Aligned_cols=248 Identities=30% Similarity=0.595 Sum_probs=201.2
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcC-----CCCEEEEecCCCcEEEEEe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA-----SGTLLATCGRDKSVWIWEV 76 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~-----~~~~l~s~~~d~~v~~w~~ 76 (281)
|..-|.|++|+|||+.||+|+.||+|++||+.+++. ....+.+|...|++++|.| .+++|+++|.||++++||+
T Consensus 156 H~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~-~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~ 234 (480)
T KOG0271|consen 156 HKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ-IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDT 234 (480)
T ss_pred CccEEEEEEECCCcchhhccccCCeEEEecCCCCCc-ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEc
Confidence 778899999999999999999999999999988764 3568899999999999965 4679999999999999998
Q ss_pred cCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCC-----C--Cc--------------------
Q 023500 77 MPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDS-----D--NW-------------------- 129 (281)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~-----~--~~-------------------- 129 (281)
..+ .++..+.+|...|+|++|..+ .+++++|.|++||+|+..+... . .|
T Consensus 235 ~~~---~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t 310 (480)
T KOG0271|consen 235 KLG---TCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHT 310 (480)
T ss_pred cCc---eEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccc
Confidence 655 467889999999999999875 4899999999999998764100 0 00
Q ss_pred -eeeeee------------------------------------------eeccCCccccEEEEEEccCCCEEEEeeCCCc
Q 023500 130 -HCVQTI------------------------------------------SESNNGHSSTIWALSFNAKGDKLVSCSDDLT 166 (281)
Q Consensus 130 -~~~~~~------------------------------------------~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~ 166 (281)
++.... .....+|...|+.+.|+||++++++++-|..
T Consensus 311 ~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS 390 (480)
T KOG0271|consen 311 GRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKS 390 (480)
T ss_pred cccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccc
Confidence 000000 0011379999999999999999999999999
Q ss_pred EEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccC
Q 023500 167 IKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKA 245 (281)
Q Consensus 167 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (281)
|++|+.+.++... +++ .|-.+|..++|+.+. ++++|+.|.++++|+++.. .+.....+
T Consensus 391 VkLW~g~tGk~la-----sfR-------GHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk---------Kl~~DLpG 449 (480)
T KOG0271|consen 391 VKLWDGRTGKFLA-----SFR-------GHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK---------KLKQDLPG 449 (480)
T ss_pred eeeeeCCCcchhh-----hhh-------hccceeEEEEeccCccEEEEcCCCceEEEEEeeee---------eecccCCC
Confidence 9999987665431 111 366789999999875 6889999999999987642 23445678
Q ss_pred CCCCeeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 246 HDMDVNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 246 h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
|...|.++.|+|+|+ .+++|+.|..+++|.
T Consensus 450 h~DEVf~vDwspDG~-rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 450 HADEVFAVDWSPDGQ-RVASGGKDKVLRLWR 479 (480)
T ss_pred CCceEEEEEecCCCc-eeecCCCceEEEeec
Confidence 999999999999987 488999999999995
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=8.7e-39 Score=238.15 Aligned_cols=249 Identities=22% Similarity=0.377 Sum_probs=195.9
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|..++.++||++++++++|+.+++||..+++ ....|.||...|.+++|+||.++|+|||.|++|++|++....
T Consensus 62 HsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~--~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c- 138 (315)
T KOG0279|consen 62 HSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGE--STRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC- 138 (315)
T ss_pred cceEecceEEccCCceEEeccccceEEEEEecCCc--EEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE-
Confidence 78899999999999999999999999999998874 467889999999999999999999999999999999986443
Q ss_pred eEEeEeecC--CccceeEEEecCC--CCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCE
Q 023500 82 FECVSVLQG--HAQDVKMVQWHPT--MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK 157 (281)
Q Consensus 82 ~~~~~~~~~--~~~~v~~v~~~p~--~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 157 (281)
..+... +.+.|.|++|+|+ ..+|+++|+|++||+|+.+.-. +.....||+..++.+.+||||..
T Consensus 139 ---k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~---------l~~~~~gh~~~v~t~~vSpDGsl 206 (315)
T KOG0279|consen 139 ---KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ---------LRTTFIGHSGYVNTVTVSPDGSL 206 (315)
T ss_pred ---EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc---------hhhccccccccEEEEEECCCCCE
Confidence 333333 3788999999998 5689999999999999776432 22334589999999999999999
Q ss_pred EEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccce
Q 023500 158 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYK 237 (281)
Q Consensus 158 l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 237 (281)
.++|+.||.+.+||++.++ .+. .-.+..+|.+++|+|+.+.++...+.++++|+............+
T Consensus 207 casGgkdg~~~LwdL~~~k-----------~ly--sl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d 273 (315)
T KOG0279|consen 207 CASGGKDGEAMLWDLNEGK-----------NLY--SLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLD 273 (315)
T ss_pred EecCCCCceEEEEEccCCc-----------eeE--eccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhcccc
Confidence 9999999999999987432 122 223678899999999999998899999999976543322211111
Q ss_pred eeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 238 MLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 238 ~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
..-...+...-.-..++|+++|..+ .+|=.|+.|++|++..
T Consensus 274 ~~g~s~~~~~~~clslaws~dG~tL-f~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 274 GIGPSSKAGDPICLSLAWSADGQTL-FAGYTDNVIRVWQVAK 314 (315)
T ss_pred ccccccccCCcEEEEEEEcCCCcEE-EeeecCCcEEEEEeec
Confidence 1000111112224668999999765 4788899999999864
No 7
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5.1e-39 Score=250.58 Aligned_cols=243 Identities=28% Similarity=0.550 Sum_probs=203.8
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCC-CCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHE-NEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~-~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
|...|+++.|+++|.++++|+.+|.|++|+.+-+. ++.+.+|. +.|++++|+|....++++|+|++|++||.....
T Consensus 137 HDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn---Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~k 213 (464)
T KOG0284|consen 137 HDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN---VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPK 213 (464)
T ss_pred hcccceeEEEccCCCEEEEcCCCceEEecccchhh---hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCc
Confidence 88999999999999999999999999999876553 44555555 999999999999999999999999999987554
Q ss_pred eeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
+ ..++.+|.-.|+++.|||...+++++|.|+.|++||..+. .|+.++. +|...|..+.|+|++.+|++
T Consensus 214 e---e~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg-----~cl~tlh----~HKntVl~~~f~~n~N~Llt 281 (464)
T KOG0284|consen 214 E---ERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG-----SCLATLH----GHKNTVLAVKFNPNGNWLLT 281 (464)
T ss_pred h---hheeccCCCCcceeccCCccceeEEccCCceeEeecCCCc-----chhhhhh----hccceEEEEEEcCCCCeeEE
Confidence 3 4567999999999999999999999999999999977654 3555554 68999999999999999999
Q ss_pred eeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC--CceeeecCCCCcEEEEecccCCCcCCcccee
Q 023500 161 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR--EGIIASGAADDSVQFFVESKDDLIDGPSYKM 238 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 238 (281)
++.|..++++|+..-+ .+..+ ..|...+.++.|+| .+++.+|+.|+.+..|.+.... .
T Consensus 282 ~skD~~~kv~DiR~mk-----------El~~~-r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~--------p 341 (464)
T KOG0284|consen 282 GSKDQSCKVFDIRTMK-----------ELFTY-RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE--------P 341 (464)
T ss_pred ccCCceEEEEehhHhH-----------HHHHh-hcchhhheeeccccccccceeeccCCCceEEEeccccc--------c
Confidence 9999999999986211 11111 13778899999998 6789999999999999775221 2
Q ss_pred eeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 239 LLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 239 ~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
+.....+|...|++++|+|-| .+|++|+.|.++|+|....+
T Consensus 342 ~~~i~~AHd~~iwsl~~hPlG-hil~tgsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 342 LGEIPPAHDGEIWSLAYHPLG-HILATGSNDRTVRFWTRNRP 382 (464)
T ss_pred ccCCCcccccceeeeeccccc-eeEeecCCCcceeeeccCCC
Confidence 233456899999999999987 58999999999999986554
No 8
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.5e-36 Score=225.46 Aligned_cols=246 Identities=30% Similarity=0.623 Sum_probs=204.0
Q ss_pred CccceeEEEEcCC-CCEEEEeeCCCcEEEEecC-CCceeeeeee-cCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 023500 2 HTRTVRSCAWSPS-GKLLATASFDATTCIWEDV-GGDYECVATL-EGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP 78 (281)
Q Consensus 2 h~~~i~~~~~~~~-~~~l~tg~~d~~i~lw~~~-~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~ 78 (281)
|.+.|+.++|+|- |.+||||+.|+.|+||+.. ...+.|...+ .+|+..|++++|+|.|++|++||.|.++-+|.-.
T Consensus 13 h~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~- 91 (312)
T KOG0645|consen 13 HKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKE- 91 (312)
T ss_pred CCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecC-
Confidence 6788999999997 9999999999999999987 4556666655 4799999999999999999999999999999753
Q ss_pred CCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEE
Q 023500 79 GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158 (281)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 158 (281)
..+++++.++.+|..+|.|++|++++.+||++|.|.+|-+|.+... +.+.|..-+ ..|+.-|..+.|+|...+|
T Consensus 92 ~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ded--dEfec~aVL----~~HtqDVK~V~WHPt~dlL 165 (312)
T KOG0645|consen 92 DGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDED--DEFECIAVL----QEHTQDVKHVIWHPTEDLL 165 (312)
T ss_pred CCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCC--CcEEEEeee----ccccccccEEEEcCCccee
Confidence 5678899999999999999999999999999999999999988733 234444434 3699999999999999999
Q ss_pred EEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccce
Q 023500 159 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYK 237 (281)
Q Consensus 159 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 237 (281)
++++-|.+|++|.... ...|....++. .|..+|.++.|++.| .+++++.|+++++|...
T Consensus 166 ~S~SYDnTIk~~~~~~--------dddW~c~~tl~-g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~----------- 225 (312)
T KOG0645|consen 166 FSCSYDNTIKVYRDED--------DDDWECVQTLD-GHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY----------- 225 (312)
T ss_pred EEeccCCeEEEEeecC--------CCCeeEEEEec-CccceEEEEEecCCCceEEEecCCcceEeeeec-----------
Confidence 9999999999996431 12244444443 467799999999977 78999999999999322
Q ss_pred eeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 238 MLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 238 ~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
..-...|+.++..++|. ++ +|+|++.|+.|+||.-..
T Consensus 226 --~~~~~~~sr~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~ 262 (312)
T KOG0645|consen 226 --TDLSGMHSRALYDVPWD-NG--VIASGGGDDAIRLFKESD 262 (312)
T ss_pred --cCcchhcccceEeeeec-cc--ceEeccCCCEEEEEEecC
Confidence 11234688899999998 33 699999999999997543
No 9
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=7.1e-36 Score=224.04 Aligned_cols=239 Identities=26% Similarity=0.412 Sum_probs=198.4
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCC----ceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCC
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGG----DYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~----~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~ 79 (281)
.-|..++|+|+|+++|+|+-|+.+.||+..+. .......+.+|++.+.|+.|-+ ..+|+|+|.|.+.-+||+..+
T Consensus 98 ~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g 176 (343)
T KOG0286|consen 98 SWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETG 176 (343)
T ss_pred eeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccc
Confidence 35788999999999999999999999997643 2233466889999999999977 578999999999999999876
Q ss_pred CeeEEeEeecCCccceeEEEecC-CCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEE
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHP-TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p-~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 158 (281)
+ .+..+.+|...|.++.+.| +++++++|+.|...++||+... .+++.+. +|...|++++|.|+|.-+
T Consensus 177 ~---~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~-----~c~qtF~----ghesDINsv~ffP~G~af 244 (343)
T KOG0286|consen 177 Q---QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-----QCVQTFE----GHESDINSVRFFPSGDAF 244 (343)
T ss_pred e---EEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc-----ceeEeec----ccccccceEEEccCCCee
Confidence 5 4678899999999999999 8999999999999999988765 3666664 899999999999999999
Q ss_pred EEeeCCCcEEEEeCCccccccCCCCcccceeEEeec-ccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccc
Q 023500 159 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISG-YHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSY 236 (281)
Q Consensus 159 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~ 236 (281)
++|+.|+++|+||++..+. +..+.. .-..+|.++.|+..| ++++|..|..+.+|+.-+..
T Consensus 245 atGSDD~tcRlyDlRaD~~-----------~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e------- 306 (343)
T KOG0286|consen 245 ATGSDDATCRLYDLRADQE-----------LAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGE------- 306 (343)
T ss_pred eecCCCceeEEEeecCCcE-----------EeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccc-------
Confidence 9999999999999864321 222221 124578899999887 46677889999999765431
Q ss_pred eeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 237 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 237 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
......+|+.+|.++..+|+|. -++|||.|..||||.
T Consensus 307 --~vg~L~GHeNRvScl~~s~DG~-av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 307 --RVGVLAGHENRVSCLGVSPDGM-AVATGSWDSTLRIWA 343 (343)
T ss_pred --eEEEeeccCCeeEEEEECCCCc-EEEecchhHheeecC
Confidence 2344569999999999999986 589999999999994
No 10
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.4e-36 Score=252.02 Aligned_cols=243 Identities=23% Similarity=0.422 Sum_probs=203.2
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCC-----------------------------ceeeeeeecCCCCCeeEEE
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGG-----------------------------DYECVATLEGHENEVKSVS 54 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~-----------------------------~~~~~~~~~~h~~~v~~v~ 54 (281)
..++|+.|++|+.+||.|-.|-.|++|..... ......++-||.++|..+.
T Consensus 379 ~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~s 458 (707)
T KOG0263|consen 379 QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCS 458 (707)
T ss_pred CcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeee
Confidence 56899999999999999999999999975421 0112345779999999999
Q ss_pred EcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeee
Q 023500 55 WNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQT 134 (281)
Q Consensus 55 ~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~ 134 (281)
|+|+.++|+++|.|.++|+|.+... .++-.+++|..+|..+.|+|-|-+++|+|.|++.++|...... ..
T Consensus 459 FsPd~rfLlScSED~svRLWsl~t~---s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~-----Pl-- 528 (707)
T KOG0263|consen 459 FSPDRRFLLSCSEDSSVRLWSLDTW---SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK-----PL-- 528 (707)
T ss_pred ecccccceeeccCCcceeeeecccc---eeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC-----ch--
Confidence 9999999999999999999998643 4667788999999999999999999999999999999766532 11
Q ss_pred eeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeee
Q 023500 135 ISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIAS 213 (281)
Q Consensus 135 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~ 213 (281)
....+|.+.|-|+.|+|+..++++|+.|.++|+||+..+.. ...+ ..|..+|.++.++|+| ++++
T Consensus 529 --RifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~-----------VRiF-~GH~~~V~al~~Sp~Gr~LaS 594 (707)
T KOG0263|consen 529 --RIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS-----------VRIF-TGHKGPVTALAFSPCGRYLAS 594 (707)
T ss_pred --hhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE-----------EEEe-cCCCCceEEEEEcCCCceEee
Confidence 22348999999999999999999999999999999864421 2233 3599999999999988 5888
Q ss_pred cCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 214 GAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 214 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
|+.|+.+.+|+...+. .+....+|++.|.++.|+.+|. +|++||.|..|++||+...
T Consensus 595 g~ed~~I~iWDl~~~~---------~v~~l~~Ht~ti~SlsFS~dg~-vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 595 GDEDGLIKIWDLANGS---------LVKQLKGHTGTIYSLSFSRDGN-VLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cccCCcEEEEEcCCCc---------chhhhhcccCceeEEEEecCCC-EEEecCCCCeEEEEEchhh
Confidence 9999999999876532 2345568899999999999875 7899999999999998654
No 11
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.7e-36 Score=250.67 Aligned_cols=200 Identities=30% Similarity=0.540 Sum_probs=175.1
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|.++|..+.|+|+.++|+++|+|.+++||...+. .++..++||..+|+++.|+|.|.++||+|.|++.++|.....
T Consensus 450 H~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~--s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~-- 525 (707)
T KOG0263|consen 450 HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW--SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN-- 525 (707)
T ss_pred CCCceeeeeecccccceeeccCCcceeeeecccc--eeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC--
Confidence 8899999999999999999999999999988765 467788899999999999999999999999999999998654
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
.+.+++.+|-+.|.|++|||+.+++++||.|.+|++||+..+. .++.+ .||.++|.+++|+|+|.+|++|
T Consensus 526 -~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~-----~VRiF----~GH~~~V~al~~Sp~Gr~LaSg 595 (707)
T KOG0263|consen 526 -KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN-----SVRIF----TGHKGPVTALAFSPCGRYLASG 595 (707)
T ss_pred -CchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCc-----EEEEe----cCCCCceEEEEEcCCCceEeec
Confidence 4578899999999999999999999999999999999987764 23333 5899999999999999999999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEeccc
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESK 227 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~ 227 (281)
+.||.|++||+..+.+. ..+. .|...+.+++|+.+| .+++++.|.++++|+...
T Consensus 596 ~ed~~I~iWDl~~~~~v-----------~~l~-~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 596 DEDGLIKIWDLANGSLV-----------KQLK-GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred ccCCcEEEEEcCCCcch-----------hhhh-cccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 99999999998754321 1222 368899999999875 788999999999998753
No 12
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2e-34 Score=214.96 Aligned_cols=244 Identities=28% Similarity=0.403 Sum_probs=197.1
Q ss_pred CCccceeEEEEcCC-CCEEEEeeCCCcEEEEecCCCce---eeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEe
Q 023500 1 MHTRTVRSCAWSPS-GKLLATASFDATTCIWEDVGGDY---ECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEV 76 (281)
Q Consensus 1 ~h~~~i~~~~~~~~-~~~l~tg~~d~~i~lw~~~~~~~---~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~ 76 (281)
.|++.|+.++..+. .+++.+++.|..+.+|+....+. .+++.++||...|..+..+++|++++++|.|+++++||+
T Consensus 13 gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl 92 (315)
T KOG0279|consen 13 GHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDL 92 (315)
T ss_pred CCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEe
Confidence 38899999999997 46899999999999998754332 247789999999999999999999999999999999999
Q ss_pred cCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC--
Q 023500 77 MPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK-- 154 (281)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-- 154 (281)
..++ +...+.+|...|.+++|+|+...+++||.|.+|++|++... |..++.. ..++..|.|++|+|+
T Consensus 93 ~~g~---~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~------ck~t~~~--~~~~~WVscvrfsP~~~ 161 (315)
T KOG0279|consen 93 ATGE---STRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV------CKYTIHE--DSHREWVSCVRFSPNES 161 (315)
T ss_pred cCCc---EEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc------EEEEEec--CCCcCcEEEEEEcCCCC
Confidence 8764 45678899999999999999999999999999999976542 4444432 234789999999998
Q ss_pred CCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCC
Q 023500 155 GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDG 233 (281)
Q Consensus 155 ~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~ 233 (281)
..++++++.|+++++||.+..+. ...+. .|..-+..+.++|+| ..++|+.|+.+.+|+++..
T Consensus 162 ~p~Ivs~s~DktvKvWnl~~~~l-----------~~~~~-gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~----- 224 (315)
T KOG0279|consen 162 NPIIVSASWDKTVKVWNLRNCQL-----------RTTFI-GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG----- 224 (315)
T ss_pred CcEEEEccCCceEEEEccCCcch-----------hhccc-cccccEEEEEECCCCCEEecCCCCceEEEEEccCC-----
Confidence 56999999999999998864322 11222 367788999999998 5678889999999977543
Q ss_pred ccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 234 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 234 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
+.+. ...|...|++++|+|+ + +.++++.+..|+|||+..
T Consensus 225 ---k~ly--sl~a~~~v~sl~fspn-r-ywL~~at~~sIkIwdl~~ 263 (315)
T KOG0279|consen 225 ---KNLY--SLEAFDIVNSLCFSPN-R-YWLCAATATSIKIWDLES 263 (315)
T ss_pred ---ceeE--eccCCCeEeeEEecCC-c-eeEeeccCCceEEEeccc
Confidence 1121 2367889999999996 3 345677778899999865
No 13
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.6e-34 Score=212.31 Aligned_cols=249 Identities=21% Similarity=0.329 Sum_probs=198.8
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCee
Q 023500 3 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF 82 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~ 82 (281)
...|+.+.+.|+++.||.+++ ..|+|||.+.+...++.++++|++.|.++.|..+|++++|||+||++|+||++..
T Consensus 40 dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~--- 115 (311)
T KOG0315|consen 40 DSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL--- 115 (311)
T ss_pred ccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCc---
Confidence 367999999999999998875 4699999988777789999999999999999999999999999999999999762
Q ss_pred EEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee
Q 023500 83 ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS 162 (281)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 162 (281)
.+.+.+ .|.+.|+++..||+...|++|..+|.|++||+.... |...+.. .-...|.++...|+|.+|+.+-
T Consensus 116 ~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~-----c~~~liP---e~~~~i~sl~v~~dgsml~a~n 186 (311)
T KOG0315|consen 116 SCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENS-----CTHELIP---EDDTSIQSLTVMPDGSMLAAAN 186 (311)
T ss_pred ccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCc-----cccccCC---CCCcceeeEEEcCCCcEEEEec
Confidence 344443 567899999999999999999999999999986531 1111211 1235689999999999999999
Q ss_pred CCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeee
Q 023500 163 DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLK 241 (281)
Q Consensus 163 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 241 (281)
..|.+.+|++-.. +....+.++..+. .|..-+..+.++|++ +++++++|+++++|.... . ...-.
T Consensus 187 nkG~cyvW~l~~~-----~~~s~l~P~~k~~-ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~--~------~kle~ 252 (311)
T KOG0315|consen 187 NKGNCYVWRLLNH-----QTASELEPVHKFQ-AHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDD--F------FKLEL 252 (311)
T ss_pred CCccEEEEEccCC-----CccccceEhhhee-cccceEEEEEECCCCcEEEeecCCceEEEEecCC--c------eeeEE
Confidence 9999999986431 1222234444443 477888899999976 788999999999995532 1 12223
Q ss_pred eccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 242 KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 242 ~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
...+|..++++++||.++. +|++|+.|+.+|+|++..
T Consensus 253 ~l~gh~rWvWdc~FS~dg~-YlvTassd~~~rlW~~~~ 289 (311)
T KOG0315|consen 253 VLTGHQRWVWDCAFSADGE-YLVTASSDHTARLWDLSA 289 (311)
T ss_pred EeecCCceEEeeeeccCcc-EEEecCCCCceeeccccc
Confidence 4568999999999999986 567999999999999875
No 14
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-35 Score=230.63 Aligned_cols=256 Identities=27% Similarity=0.444 Sum_probs=194.7
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEec-CCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWED-VGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~-~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
|++.|+.+.|+++|++||+++.|.+..+|+. ....++..+++.+|..+|.-+.||||.++|+++|.|..+++||...+.
T Consensus 223 htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd 302 (519)
T KOG0293|consen 223 HTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGD 302 (519)
T ss_pred CCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcch
Confidence 7899999999999999999999999999986 344577789999999999999999999999999999999999998775
Q ss_pred eeEEeEee-cCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEE
Q 023500 81 EFECVSVL-QGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV 159 (281)
Q Consensus 81 ~~~~~~~~-~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 159 (281)
.. ..+ .++.-.+.+++|.|++..+++|+.|+++..|+.+......|+.++ ...|.+++..+||++++
T Consensus 303 ~~---~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr---------~~~v~dlait~Dgk~vl 370 (519)
T KOG0293|consen 303 LR---HLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVR---------DPKVHDLAITYDGKYVL 370 (519)
T ss_pred hh---hhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccc---------cceeEEEEEcCCCcEEE
Confidence 32 111 234567899999999999999999999999998876555554332 24589999999999999
Q ss_pred EeeCCCcEEEEeCCcccc----ccCCCCcc--------------------------cceeEEeecccCc--ceEEEEeC-
Q 023500 160 SCSDDLTIKIWGADITRM----QSGDGYAS--------------------------WRHLCTISGYHDR--TIFSVHWS- 206 (281)
Q Consensus 160 s~~~d~~i~~w~~~~~~~----~~~~~~~~--------------------------~~~~~~~~~~~~~--~v~~~~~~- 206 (281)
+.+.|..|++++.+..-. ...++..+ ++....+. .|.. -+..-+|.
T Consensus 371 ~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~-Ghkq~~fiIrSCFgg 449 (519)
T KOG0293|consen 371 LVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYF-GHKQGHFIIRSCFGG 449 (519)
T ss_pred EEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhh-cccccceEEEeccCC
Confidence 999999999997642210 00000000 00000000 0111 11111222
Q ss_pred -CCceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 207 -REGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 207 -~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
.+.++++|+.|..+++|....+ ..+....+|...|++++|+|.++.++||+|+||+||||....
T Consensus 450 ~~~~fiaSGSED~kvyIWhr~sg---------kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 450 GNDKFIASGSEDSKVYIWHRISG---------KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCcceEEecCCCceEEEEEccCC---------ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 2457999999999999966543 234556799999999999999999999999999999998763
No 15
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-35 Score=228.19 Aligned_cols=244 Identities=33% Similarity=0.610 Sum_probs=204.5
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|..+|+.+-|+|+-.++++++.|.+|++||..+++. ...++||...|.+|+|+..|++|++++.|-.+++||....
T Consensus 107 ~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~--e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~-- 182 (406)
T KOG0295|consen 107 HRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL--ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF-- 182 (406)
T ss_pred cccceeeeeeccCceEEEEecCCceEEEEEccchhh--hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH--
Confidence 567899999999999999999999999999988865 6789999999999999999999999999999999998643
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
.+|++.+.+|...|.++.|-|.+++++|++.|.+|+.|++... .|+.++. +|+..|..++.+.||..+++|
T Consensus 183 ~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg-----~cv~t~~----~h~ewvr~v~v~~DGti~As~ 253 (406)
T KOG0295|consen 183 FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG-----YCVKTFP----GHSEWVRMVRVNQDGTIIASC 253 (406)
T ss_pred HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccc-----eeEEecc----CchHhEEEEEecCCeeEEEec
Confidence 4577788899999999999999999999999999999988764 3666664 799999999999999999999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC----------------ceeeecCCCCcEEEEec
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE----------------GIIASGAADDSVQFFVE 225 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------------~~~~~~~~d~~~~~~~~ 225 (281)
+.|.++++|-...++.... .+ .|..++-+++|-|. .++.+++.|+++++|++
T Consensus 254 s~dqtl~vW~~~t~~~k~~-----lR-------~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv 321 (406)
T KOG0295|consen 254 SNDQTLRVWVVATKQCKAE-----LR-------EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDV 321 (406)
T ss_pred CCCceEEEEEeccchhhhh-----hh-------ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEec
Confidence 9999999997664422110 01 24455555555431 26889999999999977
Q ss_pred ccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 226 SKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
... +++....+|..+|..++|+|.|+ +|+|+++|++|++||+.+.
T Consensus 322 ~tg---------~cL~tL~ghdnwVr~~af~p~Gk-yi~ScaDDktlrvwdl~~~ 366 (406)
T KOG0295|consen 322 STG---------MCLFTLVGHDNWVRGVAFSPGGK-YILSCADDKTLRVWDLKNL 366 (406)
T ss_pred cCC---------eEEEEEecccceeeeeEEcCCCe-EEEEEecCCcEEEEEeccc
Confidence 542 34555679999999999999886 5789999999999999864
No 16
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=7.7e-34 Score=228.18 Aligned_cols=258 Identities=23% Similarity=0.418 Sum_probs=197.5
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeec---CCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLE---GHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP 78 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~---~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~ 78 (281)
|.+.|+|+.|+|||+++||.+.||++.|||-.+++. +..+. +|++.|++++|+||+.+++|+|+|.++|+||+..
T Consensus 189 HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~--vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~ 266 (603)
T KOG0318|consen 189 HSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEK--VGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVST 266 (603)
T ss_pred cccceeeEEECCCCCeEEEecCCccEEEEcCCCccE--EEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeec
Confidence 788999999999999999999999999999877754 55665 8999999999999999999999999999999864
Q ss_pred CCee----------------------------------------EEeEeecCCccceeEEEecCCCCeEEEEecCCeEEE
Q 023500 79 GNEF----------------------------------------ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKV 118 (281)
Q Consensus 79 ~~~~----------------------------------------~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~ 118 (281)
..-. ....++.+|...|+++..+|++.+|++|+.||.|.-
T Consensus 267 ~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~ 346 (603)
T KOG0318|consen 267 NSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINS 346 (603)
T ss_pred cceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEE
Confidence 3210 012246799999999999999999999999999999
Q ss_pred EeCCCCCCCCc------eeeeeeee------------------------------------cc-----------------
Q 023500 119 WWAEDTDSDNW------HCVQTISE------------------------------------SN----------------- 139 (281)
Q Consensus 119 w~~~~~~~~~~------~~~~~~~~------------------------------------~~----------------- 139 (281)
|+......... ..+..+.. +.
T Consensus 347 W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~ 426 (603)
T KOG0318|consen 347 WDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACIS 426 (603)
T ss_pred EecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecC
Confidence 98765422110 00000000 00
Q ss_pred -----C--------CccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeC
Q 023500 140 -----N--------GHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS 206 (281)
Q Consensus 140 -----~--------~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 206 (281)
. .-.-.+.+++++|++..++.|+.|+.+.+|.+...... ... ...-|..++.+++++
T Consensus 427 ~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~--------ee~--~~~~h~a~iT~vayS 496 (603)
T KOG0318|consen 427 DIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELK--------EEA--KLLEHRAAITDVAYS 496 (603)
T ss_pred cEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCccc--------cee--eeecccCCceEEEEC
Confidence 0 00133568899999999999999999999977532211 000 112378899999999
Q ss_pred CCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 207 REG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 207 ~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
|++ +++++-..+.+.+|+..... ........|...|++++|+|++. ++|||+.|..|.||++.+|
T Consensus 497 pd~~yla~~Da~rkvv~yd~~s~~--------~~~~~w~FHtakI~~~aWsP~n~-~vATGSlDt~Viiysv~kP 562 (603)
T KOG0318|consen 497 PDGAYLAAGDASRKVVLYDVASRE--------VKTNRWAFHTAKINCVAWSPNNK-LVATGSLDTNVIIYSVKKP 562 (603)
T ss_pred CCCcEEEEeccCCcEEEEEcccCc--------eecceeeeeeeeEEEEEeCCCce-EEEeccccceEEEEEccCh
Confidence 987 56666678899999775431 12344566999999999999875 7999999999999999876
No 17
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.1e-36 Score=235.11 Aligned_cols=239 Identities=24% Similarity=0.488 Sum_probs=196.5
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeE
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE 83 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~ 83 (281)
-.|..+.|.|+|+.|++|+..|...||+...-.+ ...+.+|+.+|.++.|+++|.+++||+.+|.|++|+..-..
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF--EtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn--- 171 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF--ETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN--- 171 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCceeeH--HHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh---
Confidence 3688999999999999999999999997643322 34557899999999999999999999999999999864222
Q ss_pred EeEeecC-CccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee
Q 023500 84 CVSVLQG-HAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS 162 (281)
Q Consensus 84 ~~~~~~~-~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 162 (281)
+..+.+ |...|++++|+|+...++++|.||+|+|||......+ ....||.-.|.+++|+|...++++++
T Consensus 172 -Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee---------~vL~GHgwdVksvdWHP~kgLiasgs 241 (464)
T KOG0284|consen 172 -VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEE---------RVLRGHGWDVKSVDWHPTKGLIASGS 241 (464)
T ss_pred -hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchh---------heeccCCCCcceeccCCccceeEEcc
Confidence 333444 4589999999999999999999999999987654321 12258999999999999999999999
Q ss_pred CCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC-ceeeecCCCCcEEEEecccCCCcCCccceeeee
Q 023500 163 DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLK 241 (281)
Q Consensus 163 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 241 (281)
.|..|++||.+.+.+ ++++. .|...|..+.|.++ ..+++++.|.++++++++. .+ .+.
T Consensus 242 kDnlVKlWDprSg~c-----------l~tlh-~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~--------mk-El~ 300 (464)
T KOG0284|consen 242 KDNLVKLWDPRSGSC-----------LATLH-GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT--------MK-ELF 300 (464)
T ss_pred CCceeEeecCCCcch-----------hhhhh-hccceEEEEEEcCCCCeeEEccCCceEEEEehhH--------hH-HHH
Confidence 999999999886532 22222 37888999999986 4899999999999997751 11 133
Q ss_pred eccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 242 KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 242 ~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
..++|+..|++++|+|-...+|.+|+.||.|..|.+.
T Consensus 301 ~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 301 TYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred HhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence 4578999999999999988899999999999999876
No 18
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=6.8e-34 Score=225.67 Aligned_cols=239 Identities=31% Similarity=0.537 Sum_probs=190.7
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCee
Q 023500 3 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF 82 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~ 82 (281)
++.|++++|+.+|.+||+|+.||.++||+..+. .+.++..|.++|.+++|+..|.+|++++.|+++.+||...+..
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~---l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~- 310 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGN---LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV- 310 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCch---hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE-
Confidence 478999999999999999999999999987654 3567888999999999999999999999999999999866543
Q ss_pred EEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee
Q 023500 83 ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS 162 (281)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 162 (281)
...+.-|....-.|.|-. ...+++++.|+.|+|+.+.... ++.++ .+|...|.++.|+|.+.+|++|+
T Consensus 311 --~q~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~-----P~~t~----~GH~g~V~alk~n~tg~LLaS~S 378 (524)
T KOG0273|consen 311 --KQQFEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDR-----PVKTF----IGHHGEVNALKWNPTGSLLASCS 378 (524)
T ss_pred --EEeeeeccCCccceEEec-CceEeecCCCceEEEEEecCCC-----cceee----ecccCceEEEEECCCCceEEEec
Confidence 233445665545667754 4578999999999999876543 22333 37999999999999999999999
Q ss_pred CCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc----------eeeecCCCCcEEEEecccCCCcC
Q 023500 163 DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG----------IIASGAADDSVQFFVESKDDLID 232 (281)
Q Consensus 163 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~~~~~~d~~~~~~~~~~~~~~~ 232 (281)
.|+++++|...-.... ..+ ..|...|.++.|+|.+ ++++++.|..+++|++...
T Consensus 379 dD~TlkiWs~~~~~~~-----------~~l-~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g---- 442 (524)
T KOG0273|consen 379 DDGTLKIWSMGQSNSV-----------HDL-QAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG---- 442 (524)
T ss_pred CCCeeEeeecCCCcch-----------hhh-hhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC----
Confidence 9999999976422110 011 1367888899998854 6889999999999977542
Q ss_pred CccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 233 GPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 233 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
. .......|..+|.+++|+|+++ ++|+|+.||.|.||+...
T Consensus 443 -v----~i~~f~kH~~pVysvafS~~g~-ylAsGs~dg~V~iws~~~ 483 (524)
T KOG0273|consen 443 -V----PIHTLMKHQEPVYSVAFSPNGR-YLASGSLDGCVHIWSTKT 483 (524)
T ss_pred -c----eeEeeccCCCceEEEEecCCCc-EEEecCCCCeeEeccccc
Confidence 1 2233557999999999999876 689999999999998753
No 19
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=4e-34 Score=220.16 Aligned_cols=242 Identities=25% Similarity=0.438 Sum_probs=200.3
Q ss_pred CCccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC
Q 023500 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 1 ~h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
.|.+-|.|+++.|..++|+||+.|++|+|||..+++. ..++.||-+.|..+++|+...++++++.|+.|+.||+...
T Consensus 149 gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L--kltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n- 225 (460)
T KOG0285|consen 149 GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL--KLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN- 225 (460)
T ss_pred hccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE--EEeecchhheeeeeeecccCceEEEecCCCeeEEEechhh-
Confidence 4888999999999999999999999999999998864 5688999999999999999999999999999999999644
Q ss_pred eeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
+.++.+-+|-+.|.|++.+|+.+.|++|+.|.++++||+....+ +.. ..||+..|..+.+.|....+++
T Consensus 226 --kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~-----V~~----l~GH~~~V~~V~~~~~dpqvit 294 (460)
T KOG0285|consen 226 --KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS-----VHV----LSGHTNPVASVMCQPTDPQVIT 294 (460)
T ss_pred --hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccce-----EEE----ecCCCCcceeEEeecCCCceEE
Confidence 35677889999999999999999999999999999999876532 222 2589999999999998889999
Q ss_pred eeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeee
Q 023500 161 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLL 240 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 240 (281)
|+.|++|++||..-++ ..+... .|...+.+++.+|...+.+.+....++-|.+.++ ..+
T Consensus 295 ~S~D~tvrlWDl~agk-----------t~~tlt-~hkksvral~lhP~e~~fASas~dnik~w~~p~g---------~f~ 353 (460)
T KOG0285|consen 295 GSHDSTVRLWDLRAGK-----------TMITLT-HHKKSVRALCLHPKENLFASASPDNIKQWKLPEG---------EFL 353 (460)
T ss_pred ecCCceEEEeeeccCc-----------eeEeee-cccceeeEEecCCchhhhhccCCccceeccCCcc---------chh
Confidence 9999999999986442 122222 3788999999999765444444446777855443 233
Q ss_pred eeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 241 ~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
....+|...|++++.+.++ ++++|++.|.+.+||...
T Consensus 354 ~nlsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwks 390 (460)
T KOG0285|consen 354 QNLSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKS 390 (460)
T ss_pred hccccccceeeeeeeccCc--eEEEcCCceEEEEEecCc
Confidence 4466899999999998875 577999999999999765
No 20
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-34 Score=212.46 Aligned_cols=243 Identities=21% Similarity=0.344 Sum_probs=197.2
Q ss_pred ccceeEEEEcCCC-CEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcC-CCCEEEEecCCCcEEEEEecCCC
Q 023500 3 TRTVRSCAWSPSG-KLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 3 ~~~i~~~~~~~~~-~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
++.+..++|+++- ..+++++.||+++|||... +..++..+++|..+|.++.|++ +.+.++++|.|++||+|+....+
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~-~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTM-PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCC-CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 3668899999965 5778899999999999543 3357889999999999999999 56678899999999999976554
Q ss_pred eeEEeEeecCCccceeEEEecCC-CCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEcc-CCCEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPT-MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA-KGDKL 158 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~-~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l 158 (281)
.+.++.+|...|..++|+|. .++++++|.|+++++||+..... .. ...+|...+.+++|+. +...|
T Consensus 139 ---Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk----~~-----~i~ah~~Eil~cdw~ky~~~vl 206 (311)
T KOG0277|consen 139 ---SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK----FM-----SIEAHNSEILCCDWSKYNHNVL 206 (311)
T ss_pred ---ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc----ee-----EEEeccceeEeecccccCCcEE
Confidence 36779999999999999996 56899999999999999876531 11 1236888999999986 56789
Q ss_pred EEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC--ceeeecCCCCcEEEEecccCCCcCCccc
Q 023500 159 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE--GIIASGAADDSVQFFVESKDDLIDGPSY 236 (281)
Q Consensus 159 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 236 (281)
+||+.|+.|+.||++..+ .++..+ ..|...|+.+.|+|- .++++++.|-++|+|+...++.
T Consensus 207 ~Tg~vd~~vr~wDir~~r----------~pl~eL-~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds------ 269 (311)
T KOG0277|consen 207 ATGGVDNLVRGWDIRNLR----------TPLFEL-NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS------ 269 (311)
T ss_pred EecCCCceEEEEehhhcc----------ccceee-cCCceEEEEEecCcchhhHhhhccccceEEecccccchh------
Confidence 999999999999986432 223333 247888999999984 5899999999999997764322
Q ss_pred eeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 237 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 237 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
.......|++-+..+.|++..+.++|+++.|+.++||+.
T Consensus 270 --~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 270 --AIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred --hhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 233445788999999999987788999999999999985
No 21
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=8.7e-33 Score=234.70 Aligned_cols=248 Identities=29% Similarity=0.495 Sum_probs=195.3
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|.++.|+|+|+++++++.|+.+++|+....+......+.+|...|.+++|+|+|+++++++.|+++++||+....
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~- 236 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG- 236 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCC-
Confidence 4688999999999999999999999999988544322455668999999999999999999999999999999993332
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
.+++++.+|...|++++|+|+++++++|+.|++|++|+++.. .+...+ .+|...|.+++|++++.+|+++
T Consensus 237 -~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~-----~~~~~l----~~hs~~is~~~f~~d~~~l~s~ 306 (456)
T KOG0266|consen 237 -RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG-----ECVRKL----KGHSDGISGLAFSPDGNLLVSA 306 (456)
T ss_pred -eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC-----eEEEee----eccCCceEEEEECCCCCEEEEc
Confidence 457889999999999999999999999999999999988763 244444 4799999999999999999999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCc-ceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDR-TIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKML 239 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 239 (281)
+.|+.|++||+..+... ....+...... ++.++.|++++ +++++..|+.+++|++.... .
T Consensus 307 s~d~~i~vwd~~~~~~~---------~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~---------~ 368 (456)
T KOG0266|consen 307 SYDGTIRVWDLETGSKL---------CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGK---------S 368 (456)
T ss_pred CCCccEEEEECCCCcee---------eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCc---------c
Confidence 99999999998754311 01111111122 68899999876 67788889999999876532 1
Q ss_pred eeeccCCCCCe---eEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 240 LKKEKAHDMDV---NSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 240 ~~~~~~h~~~v---~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
.....+|...+ .+...++.++ ++.+|+.|+.|++|++..
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~-~i~sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 369 VGTYTGHSNLVRCIFSPTLSTGGK-LIYSGSEDGSVYVWDSSS 410 (456)
T ss_pred eeeecccCCcceeEecccccCCCC-eEEEEeCCceEEEEeCCc
Confidence 22334454433 3333455554 678999999999999874
No 22
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1e-33 Score=219.24 Aligned_cols=254 Identities=26% Similarity=0.464 Sum_probs=196.4
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEc-C--CCCEEEEecCCCcEEEEEecC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN-A--SGTLLATCGRDKSVWIWEVMP 78 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~-~--~~~~l~s~~~d~~v~~w~~~~ 78 (281)
|.+-|..+... ++.++||++||.+++||..+. +.+.+.||.++|.+++|. + ....++++|.|.++++|.+..
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk---~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK---SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEecCCc---eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 55666666665 789999999999999987664 567889999999988883 2 344799999999999999876
Q ss_pred CCee-EEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCC--------ce--------eeeeeeeccCC
Q 023500 79 GNEF-ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDN--------WH--------CVQTISESNNG 141 (281)
Q Consensus 79 ~~~~-~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~--------~~--------~~~~~~~~~~~ 141 (281)
+... .++....||...|.+|...+++..+++||+|.++++|+.+...... .+ ..+.......|
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G 258 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG 258 (423)
T ss_pred chhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence 6432 2334445999999999999999999999999999999843221100 00 00111122358
Q ss_pred ccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC-ceeeecCCCCcE
Q 023500 142 HSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE-GIIASGAADDSV 220 (281)
Q Consensus 142 h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~~ 220 (281)
|+++|.++.|++ ...+++++.|.+|+.||+.+++... .+ ....++.+++.++. .++++|++|.-+
T Consensus 259 Ht~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~-----------~~--~~~ksl~~i~~~~~~~Ll~~gssdr~i 324 (423)
T KOG0313|consen 259 HTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKS-----------TL--TTNKSLNCISYSPLSKLLASGSSDRHI 324 (423)
T ss_pred cccceeeEEEcC-CCceEeecccceEEEEEeeccccee-----------ee--ecCcceeEeecccccceeeecCCCCce
Confidence 999999999988 6789999999999999997654321 11 23567788888875 478899999999
Q ss_pred EEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 221 QFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
++|+++..+ .........+|...|.++.|+|.+.++|++++.|+++++||++.+
T Consensus 325 rl~DPR~~~------gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~ 378 (423)
T KOG0313|consen 325 RLWDPRTGD------GSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST 378 (423)
T ss_pred eecCCCCCC------CceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC
Confidence 999886532 233445667999999999999999999999999999999999864
No 23
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.4e-32 Score=212.03 Aligned_cols=253 Identities=23% Similarity=0.404 Sum_probs=198.1
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|+++|.+++.+|+.+++|||+.|..-.||+..+++ ....+.+|++.|.++.|+.+|.+||||+.+|.|+||....+..
T Consensus 63 H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge--~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~ 140 (399)
T KOG0296|consen 63 HTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE--FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGE 140 (399)
T ss_pred cCCceEEEEeCCCCceEEecCCCceEEEEEccCCc--ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCce
Confidence 89999999999999999999999999999998886 4678899999999999999999999999999999999987654
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
. ..+..-...+..++|||....+++|+.||.+.+|.+.+.. ..+...||..++++=.|.|+|+.++++
T Consensus 141 ~---~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~---------~~kv~~Gh~~~ct~G~f~pdGKr~~tg 208 (399)
T KOG0296|consen 141 Q---WKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA---------LCKVMSGHNSPCTCGEFIPDGKRILTG 208 (399)
T ss_pred E---EEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc---------eeeEecCCCCCcccccccCCCceEEEE
Confidence 2 2333446679999999999999999999999999876531 223345899999999999999999999
Q ss_pred eCCCcEEEEeCCccccccCCC----C-ccc---------------------------ceeE-------------------
Q 023500 162 SDDLTIKIWGADITRMQSGDG----Y-ASW---------------------------RHLC------------------- 190 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~----~-~~~---------------------------~~~~------------------- 190 (281)
..||+|++|+.+..++..... . ..+ +.+.
T Consensus 209 y~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~es 288 (399)
T KOG0296|consen 209 YDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDES 288 (399)
T ss_pred ecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhh
Confidence 999999999987554321111 0 000 0000
Q ss_pred --------------------------------EeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCcccee
Q 023500 191 --------------------------------TISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKM 238 (281)
Q Consensus 191 --------------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 238 (281)
+...-|...|..+.|.+..++++++.|+.++.|+.+.+ +
T Consensus 289 ve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG---------~ 359 (399)
T KOG0296|consen 289 VESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTG---------Q 359 (399)
T ss_pred hhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeecccc---------c
Confidence 00001334555666666667777777777777755432 3
Q ss_pred eeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 239 LLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 239 ~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
+.....+|...|.+++++|+.+ +++|+|.|++.+||++.
T Consensus 360 l~~~y~GH~~~Il~f~ls~~~~-~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 360 LKFTYTGHQMGILDFALSPQKR-LVVTVSDDNTALVFEVP 398 (399)
T ss_pred eEEEEecCchheeEEEEcCCCc-EEEEecCCCeEEEEecC
Confidence 4456679999999999999764 68899999999999975
No 24
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.7e-32 Score=204.88 Aligned_cols=245 Identities=22% Similarity=0.354 Sum_probs=197.2
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC-
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN- 80 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~- 80 (281)
|...|.++.|++|.++++++|.||.+.|||..+... ++.+.-...-|..++|+|.|++++.||.|+...++++...+
T Consensus 54 H~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK--~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~ 131 (343)
T KOG0286|consen 54 HLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNK--VHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDA 131 (343)
T ss_pred cccceeeeEecCCcCeEEeeccCCeEEEEEcccccc--eeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccc
Confidence 788999999999999999999999999999876653 33444456778899999999999999999999999997442
Q ss_pred --eeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEcc-CCCE
Q 023500 81 --EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA-KGDK 157 (281)
Q Consensus 81 --~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~ 157 (281)
.....+.+.+|...+.|+.|-+ ...|+++|.|.++-+||++... .+.. ..+|.+.|.+++++| +++.
T Consensus 132 ~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~-----~~~~----f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 132 EGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQ-----QTQV----FHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred cccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccce-----EEEE----ecCCcccEEEEecCCCCCCe
Confidence 1234567889999999999988 6789999999999999998763 2222 248999999999999 8899
Q ss_pred EEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce-eeecCCCCcEEEEecccCCCcCCccc
Q 023500 158 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSY 236 (281)
Q Consensus 158 l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~ 236 (281)
+++|+-|.+.++||++.... ..++ ..|+..|.++.|.|+|+ +++|+.|++.|+|+++.+-.
T Consensus 202 FvSg~cD~~aklWD~R~~~c-----------~qtF-~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~------ 263 (343)
T KOG0286|consen 202 FVSGGCDKSAKLWDVRSGQC-----------VQTF-EGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE------ 263 (343)
T ss_pred EEecccccceeeeeccCcce-----------eEee-cccccccceEEEccCCCeeeecCCCceeEEEeecCCcE------
Confidence 99999999999999874321 1223 34889999999999986 88999999999998865311
Q ss_pred eeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 237 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 237 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
..+.....-..+|++++|+..|+ +|.+|..|.++.+||.-
T Consensus 264 -~a~ys~~~~~~gitSv~FS~SGR-lLfagy~d~~c~vWDtl 303 (343)
T KOG0286|consen 264 -LAVYSHDSIICGITSVAFSKSGR-LLFAGYDDFTCNVWDTL 303 (343)
T ss_pred -EeeeccCcccCCceeEEEccccc-EEEeeecCCceeEeecc
Confidence 11222223345799999999775 67788889999999963
No 25
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=4.3e-33 Score=206.78 Aligned_cols=253 Identities=20% Similarity=0.349 Sum_probs=192.0
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|.++++.+.|+.+|.+|.+++.|....+|-..+++ .+.++.||.+.|+|++.+-+.++++||++|.++++||+..++.
T Consensus 9 HERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe--rlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~ 86 (327)
T KOG0643|consen 9 HERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE--RLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQ 86 (327)
T ss_pred CccccceEEecCCCcEEEEecCCCCceEEEecCCc--eeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcE
Confidence 88999999999999999999999999999775553 5789999999999999999999999999999999999987654
Q ss_pred eEE--------------------------------------------------eEeecCCccceeEEEecCCCCeEEEEe
Q 023500 82 FEC--------------------------------------------------VSVLQGHAQDVKMVQWHPTMDVLFSCS 111 (281)
Q Consensus 82 ~~~--------------------------------------------------~~~~~~~~~~v~~v~~~p~~~~l~s~s 111 (281)
... ...+..+.+.++.+-|.|.++.|++|.
T Consensus 87 la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Gh 166 (327)
T KOG0643|consen 87 LATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGH 166 (327)
T ss_pred EEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEec
Confidence 311 122345677889999999999999999
Q ss_pred cCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEE
Q 023500 112 YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCT 191 (281)
Q Consensus 112 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~ 191 (281)
+||.|..||+.... .+-+....|...|+.++++++.+++++++.|.+-++||.... ..+.+
T Consensus 167 e~G~is~~da~~g~--------~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl-----------~v~Kt 227 (327)
T KOG0643|consen 167 EDGSISIYDARTGK--------ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL-----------EVLKT 227 (327)
T ss_pred CCCcEEEEEcccCc--------eeeechhhhccccccccccCCcceEEecccCccceeeeccce-----------eeEEE
Confidence 99999999887642 122333468889999999999999999999999999998632 22223
Q ss_pred eecccCcceEEEEeCC--CceeeecCCCCcEEEEecccCCCcCCcc----ceeeeeeccCCCCCeeEEEEcCCCCeeEEE
Q 023500 192 ISGYHDRTIFSVHWSR--EGIIASGAADDSVQFFVESKDDLIDGPS----YKMLLKKEKAHDMDVNSVQWSPGERRLLAS 265 (281)
Q Consensus 192 ~~~~~~~~v~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s 265 (281)
+. .+.|+.+.+.+| +..++.|+.+-.-.---....+-++... +.+.+.+.++|-++|++++|+|+|+ .++|
T Consensus 228 y~--te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGk-sYsS 304 (327)
T KOG0643|consen 228 YT--TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGK-SYSS 304 (327)
T ss_pred ee--ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCc-cccc
Confidence 32 467788877777 4455555544221111111111111111 1233456689999999999999987 5899
Q ss_pred eCCCCeEEEEEcc
Q 023500 266 ASDDGMIKIWELA 278 (281)
Q Consensus 266 ~~~Dg~v~iw~~~ 278 (281)
|++||.|||.-+.
T Consensus 305 GGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 305 GGEDGYVRLHHFD 317 (327)
T ss_pred CCCCceEEEEEec
Confidence 9999999986543
No 26
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.6e-32 Score=201.86 Aligned_cols=235 Identities=20% Similarity=0.371 Sum_probs=185.5
Q ss_pred CEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccce
Q 023500 16 KLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDV 95 (281)
Q Consensus 16 ~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v 95 (281)
-+||++|+|.+|++|+..++ .|..++...++.|+.+.+.|+++.|++++. ..||++|+.+.++. ++.++.+|...|
T Consensus 11 viLvsA~YDhTIRfWqa~tG--~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~-Pv~t~e~h~kNV 86 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTG--ICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN-PVATFEGHTKNV 86 (311)
T ss_pred eEEEeccCcceeeeeehhcC--eEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC-ceeEEeccCCce
Confidence 38999999999999998887 578888877789999999999999998876 68999999877653 678899999999
Q ss_pred eEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCcc
Q 023500 96 KMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADIT 175 (281)
Q Consensus 96 ~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~ 175 (281)
++|.|.-++...++||+||++||||+.... +.+.+ .|.++|+++..+|+...|++|..+|.|++||+...
T Consensus 87 taVgF~~dgrWMyTgseDgt~kIWdlR~~~-----~qR~~-----~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~ 156 (311)
T KOG0315|consen 87 TAVGFQCDGRWMYTGSEDGTVKIWDLRSLS-----CQRNY-----QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN 156 (311)
T ss_pred EEEEEeecCeEEEecCCCceEEEEeccCcc-----cchhc-----cCCCCcceEEecCCcceEEeecCCCcEEEEEccCC
Confidence 999999999999999999999999886531 22222 46799999999999999999999999999998632
Q ss_pred ccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEE
Q 023500 176 RMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQ 254 (281)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 254 (281)
.... ....-.+.++.++...++| +++++...|...+|..... ...+. ..-+...+.|+.-++.+.
T Consensus 157 ~c~~-----------~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~-~~~s~--l~P~~k~~ah~~~il~C~ 222 (311)
T KOG0315|consen 157 SCTH-----------ELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNH-QTASE--LEPVHKFQAHNGHILRCL 222 (311)
T ss_pred cccc-----------ccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCC-Ccccc--ceEhhheecccceEEEEE
Confidence 2111 0011134667888888887 5666667789999976541 11111 111234578999999999
Q ss_pred EcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 255 WSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 255 ~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
+||+++ +|+++|.|.+++||....
T Consensus 223 lSPd~k-~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 223 LSPDVK-YLATCSSDKTVKIWNTDD 246 (311)
T ss_pred ECCCCc-EEEeecCCceEEEEecCC
Confidence 999986 588999999999999764
No 27
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.9e-34 Score=227.12 Aligned_cols=252 Identities=28% Similarity=0.525 Sum_probs=195.6
Q ss_pred CccceeEEEEcC-CCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC
Q 023500 2 HTRTVRSCAWSP-SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 2 h~~~i~~~~~~~-~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
|++.|+++.|.| .+.+|++|+.|+.|+||+... +..++.++.+|..+|.+++|+++|..++|+|.|+.+++||+..++
T Consensus 213 H~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~-~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~ 291 (503)
T KOG0282|consen 213 HTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD-DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQ 291 (503)
T ss_pred CccccchhhhccceeeEEEecCCCceEEEEEEec-CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccce
Confidence 889999999999 899999999999999999876 346899999999999999999999999999999999999998775
Q ss_pred eeEEeEeecCCccceeEEEecCCC-CeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTM-DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV 159 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~-~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 159 (281)
. +..+.. ...+.|++|+|++ +.+++|+.|+.|+.||+.... .++. ...|-+.|..+.|-+++..++
T Consensus 292 ~---~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-----vvqe----Yd~hLg~i~~i~F~~~g~rFi 358 (503)
T KOG0282|consen 292 V---LSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-----VVQE----YDRHLGAILDITFVDEGRRFI 358 (503)
T ss_pred E---EEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-----HHHH----HHhhhhheeeeEEccCCceEe
Confidence 3 332321 3457899999998 689999999999999887653 1222 235778899999999999999
Q ss_pred EeeCCCcEEEEeCCccccccCCCC--------------ccc-------ceeEEeec-------------cc--CcceEEE
Q 023500 160 SCSDDLTIKIWGADITRMQSGDGY--------------ASW-------RHLCTISG-------------YH--DRTIFSV 203 (281)
Q Consensus 160 s~~~d~~i~~w~~~~~~~~~~~~~--------------~~~-------~~~~~~~~-------------~~--~~~v~~~ 203 (281)
+.+.|+.+++|+....-+....-. ..| ..+..++. .| .+--+.+
T Consensus 359 ssSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v 438 (503)
T KOG0282|consen 359 SSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQV 438 (503)
T ss_pred eeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeE
Confidence 999999999998653211100000 000 00000000 01 1122457
Q ss_pred EeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 204 HWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 204 ~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
.|+|+| ++++|.+||.+.+|+.+.- .++...++|+.++..+.|+|..+..+|||+.||.|++|+
T Consensus 439 ~fSpDG~~l~SGdsdG~v~~wdwkt~---------kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 439 DFSPDGRTLCSGDSDGKVNFWDWKTT---------KLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEcCCCCeEEeecCCccEEEeechhh---------hhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 888886 6889999999999977642 234556789999999999999888899999999999996
No 28
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=7.4e-33 Score=218.89 Aligned_cols=260 Identities=24% Similarity=0.431 Sum_probs=205.2
Q ss_pred CCccceeEEEEcCCC-CEEEEeeCCCcEEEEecCCCce--------eeeeeecCCCCCeeEEEEcCC-CCEEEEecCCCc
Q 023500 1 MHTRTVRSCAWSPSG-KLLATASFDATTCIWEDVGGDY--------ECVATLEGHENEVKSVSWNAS-GTLLATCGRDKS 70 (281)
Q Consensus 1 ~h~~~i~~~~~~~~~-~~l~tg~~d~~i~lw~~~~~~~--------~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~ 70 (281)
+|.+.|+.+.+-|+. .++|+++..+.+.|||..+..- .+-..+.||.+.-++++|++. .-.|++++.|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 488999999999965 5788889999999999654321 223377899998899999994 567999999999
Q ss_pred EEEEEecCCCe----eEEeEeecCCccceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCcccc
Q 023500 71 VWIWEVMPGNE----FECVSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSST 145 (281)
Q Consensus 71 v~~w~~~~~~~----~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~ 145 (281)
|.+||+..... ..+...+.+|.+.|..++|+|... ++++++.|+.+.|||.....+ .......+|.+.
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~-------~~~~~~~ah~~~ 274 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS-------KPSHSVKAHSAE 274 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC-------CCcccccccCCc
Confidence 99999976543 345677889999999999999754 789999999999999875211 122233589999
Q ss_pred EEEEEEccC-CCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC--ceeeecCCCCcEEE
Q 023500 146 IWALSFNAK-GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE--GIIASGAADDSVQF 222 (281)
Q Consensus 146 v~~~~~~~~-~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~d~~~~~ 222 (281)
|+|++|+|- +..||||+.|++|++||++.-+ ..+..+. .|...|+++.|+|. .++++++.|+++.+
T Consensus 275 vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~----------~~lh~~e-~H~dev~~V~WSPh~etvLASSg~D~rl~v 343 (422)
T KOG0264|consen 275 VNCVAFNPFNEFILATGSADKTVALWDLRNLN----------KPLHTFE-GHEDEVFQVEWSPHNETVLASSGTDRRLNV 343 (422)
T ss_pred eeEEEeCCCCCceEEeccCCCcEEEeechhcc----------cCceecc-CCCcceEEEEeCCCCCceeEecccCCcEEE
Confidence 999999995 4589999999999999985321 1233333 48899999999984 68999999999999
Q ss_pred EecccCCCcCC-----ccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 223 FVESKDDLIDG-----PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 223 ~~~~~~~~~~~-----~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
|+..+.+.... .....++....+|...|....|+|..+++++|.++|+.+.||++.
T Consensus 344 WDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 344 WDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred EeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 99876443221 111233445679999999999999999999999999999999987
No 29
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.4e-32 Score=231.08 Aligned_cols=247 Identities=34% Similarity=0.575 Sum_probs=192.7
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|+..|+.++|+|+|+++++|+.|++|+|||.... ..+++++.+|...|++++|+|+|+++++|+.|++|++||+..+
T Consensus 202 h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~-~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~-- 278 (456)
T KOG0266|consen 202 HTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD-GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG-- 278 (456)
T ss_pred cccceeeeEECCCCcEEEEecCCceEEEeeccCC-CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC--
Confidence 7889999999999999999999999999998332 2468899999999999999999999999999999999999763
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
++...+.+|...|++++|+++++++++++.|+.|++||+...... +...+.. ..... .++++.|+|++.+++++
T Consensus 279 -~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~~~~~-~~~~~-~~~~~~fsp~~~~ll~~ 352 (456)
T KOG0266|consen 279 -ECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL---CLKLLSG-AENSA-PVTSVQFSPNGKYLLSA 352 (456)
T ss_pred -eEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee---eeecccC-CCCCC-ceeEEEECCCCcEEEEe
Confidence 578899999999999999999999999999999999998765311 1222221 11122 68999999999999999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccC--cceEEEEeCCC-ceeeecCCCCcEEEEecccCCCcCCcccee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHD--RTIFSVHWSRE-GIIASGAADDSVQFFVESKDDLIDGPSYKM 238 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 238 (281)
..|+++++||+........ ..+... ..+++....+. ..+++|+.|+.+.+|+.... .
T Consensus 353 ~~d~~~~~w~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~---------~ 412 (456)
T KOG0266|consen 353 SLDRTLKLWDLRSGKSVGT-----------YTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG---------G 412 (456)
T ss_pred cCCCeEEEEEccCCcceee-----------ecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc---------c
Confidence 9999999999864332111 111111 12223333333 46889999999999977542 2
Q ss_pred eeeeccCC-CCCeeEEEEcCCCCeeEEEeC--CCCeEEEEEcc
Q 023500 239 LLKKEKAH-DMDVNSVQWSPGERRLLASAS--DDGMIKIWELA 278 (281)
Q Consensus 239 ~~~~~~~h-~~~v~~~~~~~~~~~~~~s~~--~Dg~v~iw~~~ 278 (281)
......+| ...+..+.++|.. +++++++ .|+.+++|...
T Consensus 413 ~~~~l~~h~~~~~~~~~~~~~~-~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 413 ILQRLEGHSKAAVSDLSSHPTE-NLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred hhhhhcCCCCCceeccccCCCc-CeeeecCcCCCceEEEecCC
Confidence 23345567 7888999999975 5788887 69999999864
No 30
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.3e-32 Score=199.60 Aligned_cols=240 Identities=23% Similarity=0.431 Sum_probs=194.7
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|+..|+.+.|+-||+|.++++.|.+++||++..+ .+++++.+|..+|..++.+.|...+++||.|+.+.+||+..++
T Consensus 16 ~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg--~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGk- 92 (307)
T KOG0316|consen 16 AQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG--ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGK- 92 (307)
T ss_pred cccceEEEEEccCCCEEEEcCCCceEEeeccccc--ceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCe-
Confidence 5788999999999999999999999999998777 4689999999999999999999999999999999999998775
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
..+.+.+|...|+.++|+.+...+++||.|.++++||..+... .+++.+.. ....|.++... +..+++|
T Consensus 93 --v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~---ePiQilde----a~D~V~Si~v~--~heIvaG 161 (307)
T KOG0316|consen 93 --VDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSF---EPIQILDE----AKDGVSSIDVA--EHEIVAG 161 (307)
T ss_pred --eeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCC---Cccchhhh----hcCceeEEEec--ccEEEee
Confidence 4678999999999999999999999999999999999876543 23333332 34668777765 3479999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 240 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 240 (281)
+.||++|.||++.+.. ++.+...||.++++++++ ..++++-|.++++.+...+. ++
T Consensus 162 S~DGtvRtydiR~G~l--------------~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGk---------lL 218 (307)
T KOG0316|consen 162 SVDGTVRTYDIRKGTL--------------SSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGK---------LL 218 (307)
T ss_pred ccCCcEEEEEeeccee--------------ehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhH---------HH
Confidence 9999999999876542 244678899999999976 67888899999999665432 33
Q ss_pred eeccCCCCCe--eEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 241 KKEKAHDMDV--NSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 241 ~~~~~h~~~v--~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
...++|...= ..+.++... ..+++|++||.|.+||+..
T Consensus 219 ~sYkGhkn~eykldc~l~qsd-thV~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 219 KSYKGHKNMEYKLDCCLNQSD-THVFSGSEDGKVYFWDLVD 258 (307)
T ss_pred HHhcccccceeeeeeeecccc-eeEEeccCCceEEEEEecc
Confidence 4455665432 334454433 3578999999999999864
No 31
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.2e-32 Score=205.10 Aligned_cols=248 Identities=23% Similarity=0.408 Sum_probs=192.9
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|.+.|+++.|+|+|..||||+.|..|.||+..+.. +....+++|.++|..+.|.+|++.|+++|.|++++.||.+.++
T Consensus 46 h~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc-eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~- 123 (338)
T KOG0265|consen 46 HKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC-ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGK- 123 (338)
T ss_pred CcceEEEEEECCCCCeEeecCCcceEEEEeccccc-cceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccce-
Confidence 77899999999999999999999999999876533 4566788999999999999999999999999999999997664
Q ss_pred eEEeEeecCCccceeEEEecCCC-CeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEE
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTM-DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~-~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
+++..++|...|+++.-..-+ .++.|++.|+++++||+...+ ++++++ -+.+++++.|..+++.+.+
T Consensus 124 --~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~-----~~~t~~-----~kyqltAv~f~d~s~qv~s 191 (338)
T KOG0265|consen 124 --RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE-----AIKTFE-----NKYQLTAVGFKDTSDQVIS 191 (338)
T ss_pred --eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc-----hhhccc-----cceeEEEEEecccccceee
Confidence 577888999999888733223 368899999999999887543 344442 2467899999999999999
Q ss_pred eeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceee
Q 023500 161 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKML 239 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 239 (281)
|+-|+.|++||+... ....... .|..+|+.++.+++| .+++-+-|..+++|++++--.. .+. ..
T Consensus 192 ggIdn~ikvWd~r~~-----------d~~~~ls-Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~-~R~--v~ 256 (338)
T KOG0265|consen 192 GGIDNDIKVWDLRKN-----------DGLYTLS-GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS-QRC--VK 256 (338)
T ss_pred ccccCceeeeccccC-----------cceEEee-cccCceeeEEeccCCCccccccccceEEEEEecccCCC-Cce--EE
Confidence 999999999988521 1122333 478899999999876 5777788999999988653211 111 11
Q ss_pred eeeccCCCC--CeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 240 LKKEKAHDM--DVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 240 ~~~~~~h~~--~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
+.....|.. ....++|+|++. .+..|+.|..+.+||...
T Consensus 257 if~g~~hnfeknlL~cswsp~~~-~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 257 IFQGHIHNFEKNLLKCSWSPNGT-KITAGSADRFVYVWDTTS 297 (338)
T ss_pred EeecchhhhhhhcceeeccCCCC-ccccccccceEEEeeccc
Confidence 222233333 356789999876 477899999999999765
No 32
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-32 Score=224.22 Aligned_cols=241 Identities=25% Similarity=0.453 Sum_probs=207.6
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|.+.|.++.|+|.-..++++-..|.+.||+..+.. .++.++-.+.+|.+..|-+..+++++|++|..|++++....
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqt--mVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~-- 87 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQT--MVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG-- 87 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccce--eeeeeeecccchhhheeeeccceEEEecCCceEEEEecccc--
Confidence 56889999999999999999999999999987653 57788777899999999999999999999999999998654
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEcc-CCCEEEE
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA-KGDKLVS 160 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s 160 (281)
+.+..+.+|.+-|++++.||+..+++|+|.|-+||+|+-+.. |.|.++++ ||..-|.+++|+| |...+++
T Consensus 88 -ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~----wa~~qtfe----GH~HyVMqv~fnPkD~ntFaS 158 (794)
T KOG0276|consen 88 -EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE----WACEQTFE----GHEHYVMQVAFNPKDPNTFAS 158 (794)
T ss_pred -eeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc----eeeeeEEc----CcceEEEEEEecCCCccceee
Confidence 457889999999999999999999999999999999987653 66766664 8999999999999 4568999
Q ss_pred eeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc---eeeecCCCCcEEEEecccCCCcCCccce
Q 023500 161 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG---IIASGAADDSVQFFVESKDDLIDGPSYK 237 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 237 (281)
++-|++|++|.+... .+.+++. .|+..|.++.+-+.| ++++|+.|.++++|+... +
T Consensus 159 ~sLDrTVKVWslgs~-----------~~nfTl~-gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt---------k 217 (794)
T KOG0276|consen 159 ASLDRTVKVWSLGSP-----------HPNFTLE-GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT---------K 217 (794)
T ss_pred eeccccEEEEEcCCC-----------CCceeee-ccccCcceEEeccCCCcceEEecCCCceEEEeecch---------H
Confidence 999999999976421 2234444 488999999998877 999999999999997643 3
Q ss_pred eeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 238 MLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 238 ~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
.++....+|...|..+.|+|.- .+++|||+||+||||.-
T Consensus 218 ~CV~TLeGHt~Nvs~v~fhp~l-piiisgsEDGTvriWhs 256 (794)
T KOG0276|consen 218 SCVQTLEGHTNNVSFVFFHPEL-PIIISGSEDGTVRIWNS 256 (794)
T ss_pred HHHHHhhcccccceEEEecCCC-cEEEEecCCccEEEecC
Confidence 4566678999999999999964 58999999999999974
No 33
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-32 Score=233.66 Aligned_cols=255 Identities=22% Similarity=0.443 Sum_probs=205.2
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeE
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE 83 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~ 83 (281)
..|..++|+|....++++-..|.|++||..-+. ++..|.+|+++|..+.|+|.+.+++|||+|..|+||+... ..
T Consensus 10 sRvKglsFHP~rPwILtslHsG~IQlWDYRM~t--li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~---rr 84 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT--LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT---RR 84 (1202)
T ss_pred ccccceecCCCCCEEEEeecCceeeeehhhhhh--HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc---ce
Confidence 457789999999999999999999999976653 5778899999999999999999999999999999999853 35
Q ss_pred EeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeC
Q 023500 84 CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD 163 (281)
Q Consensus 84 ~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 163 (281)
|+.++.+|-+.|+.+.||+.-..|+|+|.|-+|+||+..+. +|+..+ .||.-.|.|..|+|..+.+++++-
T Consensus 85 clftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr-----~~iavl----tGHnHYVMcAqFhptEDlIVSaSL 155 (1202)
T KOG0292|consen 85 CLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR-----KCIAVL----TGHNHYVMCAQFHPTEDLIVSASL 155 (1202)
T ss_pred ehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCC-----ceEEEE----ecCceEEEeeccCCccceEEEecc
Confidence 88999999999999999999999999999999999966543 355444 489999999999999999999999
Q ss_pred CCcEEEEeCCccccccCCCC--cc----------c-----ceeEEeecccCcceEEEEeCCC-ceeeecCCCCcEEEEec
Q 023500 164 DLTIKIWGADITRMQSGDGY--AS----------W-----RHLCTISGYHDRTIFSVHWSRE-GIIASGAADDSVQFFVE 225 (281)
Q Consensus 164 d~~i~~w~~~~~~~~~~~~~--~~----------~-----~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~~~~~~~ 225 (281)
|.+||+||+...+-....+. .. + -........|++.|.-++|+|. .++++|+.|+.+++|..
T Consensus 156 DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrm 235 (1202)
T KOG0292|consen 156 DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRM 235 (1202)
T ss_pred cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEe
Confidence 99999999753211110000 00 0 0011122357888888889885 57899999999999966
Q ss_pred ccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 226 SKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
+.. +... .....+|...|.++-|+|.. .+++|.|+|+.+||||+...
T Consensus 236 net-----KaWE--vDtcrgH~nnVssvlfhp~q-~lIlSnsEDksirVwDm~kR 282 (1202)
T KOG0292|consen 236 NET-----KAWE--VDTCRGHYNNVSSVLFHPHQ-DLILSNSEDKSIRVWDMTKR 282 (1202)
T ss_pred ccc-----ccee--ehhhhcccCCcceEEecCcc-ceeEecCCCccEEEEecccc
Confidence 432 2211 23457899999999999964 58899999999999998753
No 34
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-32 Score=211.83 Aligned_cols=241 Identities=31% Similarity=0.502 Sum_probs=203.9
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|++.|.+++|+..|+++|+++.|-.+++||..+. +.+.+.+.+|...|.++.|-|.|.+|+|++.|++|+.|++..+
T Consensus 149 Ht~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~-~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg-- 225 (406)
T KOG0295|consen 149 HTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF-FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG-- 225 (406)
T ss_pred cccceeEEEEecCccEEEecCCccchhheeHHHH-HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccc--
Confidence 7888999999999999999999999999987653 5678888999999999999999999999999999999999655
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC-------
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK------- 154 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~------- 154 (281)
.++.++.+|..-|+.++.+.++.++++++.|.++++|-++... |... ...|.-+|-+++|.|.
T Consensus 226 -~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~-----~k~~----lR~hEh~vEci~wap~~~~~~i~ 295 (406)
T KOG0295|consen 226 -YCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQ-----CKAE----LREHEHPVECIAWAPESSYPSIS 295 (406)
T ss_pred -eeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccch-----hhhh----hhccccceEEEEecccccCcchh
Confidence 5789999999999999999999999999999999999665431 2222 2367788888988662
Q ss_pred ---C-----CEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEec
Q 023500 155 ---G-----DKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVE 225 (281)
Q Consensus 155 ---~-----~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~ 225 (281)
+ .++.++++|++|++||+.++. -+.++. .|+..|..++++|.| +++++..|+++++|+.
T Consensus 296 ~at~~~~~~~~l~s~SrDktIk~wdv~tg~-----------cL~tL~-ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl 363 (406)
T KOG0295|consen 296 EATGSTNGGQVLGSGSRDKTIKIWDVSTGM-----------CLFTLV-GHDNWVRGVAFSPGGKYILSCADDKTLRVWDL 363 (406)
T ss_pred hccCCCCCccEEEeecccceEEEEeccCCe-----------EEEEEe-cccceeeeeEEcCCCeEEEEEecCCcEEEEEe
Confidence 2 489999999999999987543 233333 489999999999987 6889999999999987
Q ss_pred ccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 226 SKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
+. .+++.....|+.-|+++.|+.+.+ +++||+-|..+++|.-
T Consensus 364 ~~---------~~cmk~~~ah~hfvt~lDfh~~~p-~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 364 KN---------LQCMKTLEAHEHFVTSLDFHKTAP-YVVTGSVDQTVKVWEC 405 (406)
T ss_pred cc---------ceeeeccCCCcceeEEEecCCCCc-eEEeccccceeeeeec
Confidence 64 245566668999999999998765 6889999999999973
No 35
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-32 Score=229.28 Aligned_cols=244 Identities=26% Similarity=0.415 Sum_probs=198.8
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCC--ceeeeeeecCCCCCeeEEEEcCC-CCEEEEecCCCcEEEEEecC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGG--DYECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMP 78 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~--~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~~w~~~~ 78 (281)
|++.|.+++...+|.+||||+.|+++++|..+.+ +..+++...+|...|.+++++.. ..+|+++|.|+++++|++..
T Consensus 364 H~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~ 443 (775)
T KOG0319|consen 364 HTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPK 443 (775)
T ss_pred chhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCC
Confidence 7888999997778899999999999999977433 34467778899999999999774 46899999999999999976
Q ss_pred CCeeE--E----eEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEc
Q 023500 79 GNEFE--C----VSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN 152 (281)
Q Consensus 79 ~~~~~--~----~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 152 (281)
..+.. . ..+...|...|+||+.+|+..+++|||.|.+.++|++++.. +.....||+..|+++.|+
T Consensus 444 s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~---------l~~vLsGH~RGvw~V~Fs 514 (775)
T KOG0319|consen 444 SKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR---------LLGVLSGHTRGVWCVSFS 514 (775)
T ss_pred cccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCce---------EEEEeeCCccceEEEEec
Confidence 32211 1 12345799999999999999999999999999999887432 222335999999999999
Q ss_pred cCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC-ceeeecCCCCcEEEEecccCCCc
Q 023500 153 AKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE-GIIASGAADDSVQFFVESKDDLI 231 (281)
Q Consensus 153 ~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~ 231 (281)
|..+.++||+.|.+|+||.+.... -..++. .|+..|...+|-.+ ..+++++.||.+++|.++..
T Consensus 515 ~~dq~laT~SgD~TvKIW~is~fS-----------ClkT~e-GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~--- 579 (775)
T KOG0319|consen 515 KNDQLLATCSGDKTVKIWSISTFS-----------CLKTFE-GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTN--- 579 (775)
T ss_pred cccceeEeccCCceEEEEEeccce-----------eeeeec-CccceeEeeeeeeCCcEEEeccCCCcEEEEeccch---
Confidence 999999999999999999876432 223343 37778888777654 57999999999999988653
Q ss_pred CCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 232 DGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 232 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
.+.....+|...|++++-+|... .++||+.||.|.+|.
T Consensus 580 ------eC~~tlD~H~DrvWaL~~~~~~~-~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 580 ------ECEMTLDAHNDRVWALSVSPLLD-MFVTGGGDGRIIFWK 617 (775)
T ss_pred ------hhhhhhhhccceeEEEeecCccc-eeEecCCCeEEEEee
Confidence 34455678999999999999875 788999999999996
No 36
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.1e-31 Score=221.38 Aligned_cols=252 Identities=22% Similarity=0.413 Sum_probs=197.1
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|-..+++++++|||+++|||+.||.|+|||...+ .|..++..|+..|+.+.|+..|+.++++|.||+|+.||+...+.
T Consensus 349 H~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg--fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN 426 (893)
T KOG0291|consen 349 HSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG--FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN 426 (893)
T ss_pred cccceeeEEECCCCcEEEeccCCCcEEEEeccCc--eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce
Confidence 6788999999999999999999999999997655 58899999999999999999999999999999999999977654
Q ss_pred eEEeEeecCCc-cceeEEEecCCCCeEEEEecCC-eEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEE
Q 023500 82 FECVSVLQGHA-QDVKMVQWHPTMDVLFSCSYDN-TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV 159 (281)
Q Consensus 82 ~~~~~~~~~~~-~~v~~v~~~p~~~~l~s~s~d~-~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 159 (281)
+ +++.... ....|++..|.+.++.+|+.|. .|++|.+.++. +.....||.++|.+++|+|++..|+
T Consensus 427 f---RTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq---------llDiLsGHEgPVs~l~f~~~~~~La 494 (893)
T KOG0291|consen 427 F---RTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ---------LLDILSGHEGPVSGLSFSPDGSLLA 494 (893)
T ss_pred e---eeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe---------eeehhcCCCCcceeeEEccccCeEE
Confidence 3 4444432 3457899999999999999996 89999887653 3344579999999999999999999
Q ss_pred EeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCc---CC--
Q 023500 160 SCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLI---DG-- 233 (281)
Q Consensus 160 s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~---~~-- 233 (281)
+++.|.+||+||+-... .....+. ....+..+++.|+| .++....||.+.+|+.+..... ++
T Consensus 495 S~SWDkTVRiW~if~s~----------~~vEtl~--i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Idgrk 562 (893)
T KOG0291|consen 495 SGSWDKTVRIWDIFSSS----------GTVETLE--IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRK 562 (893)
T ss_pred eccccceEEEEEeeccC----------ceeeeEe--eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchh
Confidence 99999999999863211 1122222 34567888999987 5788889999999987643221 11
Q ss_pred -----cc-ceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 234 -----PS-YKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 234 -----~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
.. ...............+.+.++++|.. +++||....|+||++...
T Consensus 563 D~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~-IlAgG~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 563 DLSGGRKETDRITAENSAKGKTFTTICYSADGKC-ILAGGESNSICIYDVPEG 614 (893)
T ss_pred hccccccccceeehhhcccCCceEEEEEcCCCCE-EEecCCcccEEEEECchh
Confidence 00 01112222334567899999999874 668999999999998753
No 37
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.3e-32 Score=229.83 Aligned_cols=250 Identities=20% Similarity=0.363 Sum_probs=182.6
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCC--------------------------------C--------------
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVG--------------------------------G-------------- 35 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~--------------------------------~-------------- 35 (281)
|++.|+++.|++||+|||+||.|+.|+||.+.. .
T Consensus 266 h~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s 345 (712)
T KOG0283|consen 266 HKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQS 345 (712)
T ss_pred cCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCC
Confidence 889999999999999999999999999998654 0
Q ss_pred ------------ceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecC-
Q 023500 36 ------------DYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP- 102 (281)
Q Consensus 36 ------------~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p- 102 (281)
...++..+.||.+.|.+++|+.+ .+|+|+|.|++||||.+... +|+.++ .|.+-|+||+|+|
T Consensus 346 ~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~---~CL~~F-~HndfVTcVaFnPv 420 (712)
T KOG0283|consen 346 PCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRK---ECLKVF-SHNDFVTCVAFNPV 420 (712)
T ss_pred ccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCc---ceeeEE-ecCCeeEEEEeccc
Confidence 01124466799999999999865 68999999999999998533 467665 5999999999999
Q ss_pred CCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCC
Q 023500 103 TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDG 182 (281)
Q Consensus 103 ~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~ 182 (281)
|.+++++||-|++|+||.+.+..-..| .. - ...|++++|.|+|+..+.|+-+|.+++|++...+......
T Consensus 421 DDryFiSGSLD~KvRiWsI~d~~Vv~W------~D---l-~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~ 490 (712)
T KOG0283|consen 421 DDRYFISGSLDGKVRLWSISDKKVVDW------ND---L-RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH 490 (712)
T ss_pred CCCcEeecccccceEEeecCcCeeEee------hh---h-hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeee
Confidence 566999999999999998876432222 11 1 3779999999999999999999999999886544332211
Q ss_pred CcccceeEEeecccCcceEEEEeCCCc--eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCC
Q 023500 183 YASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGER 260 (281)
Q Consensus 183 ~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 260 (281)
+...+ . .......|+.+++.|.. .++..+.|..+|+|+....++. . .++....-.. =....|+.+|+
T Consensus 491 I~~~~---~-Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv-----~-KfKG~~n~~S-Q~~Asfs~Dgk 559 (712)
T KOG0283|consen 491 IRLHN---K-KKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLV-----H-KFKGFRNTSS-QISASFSSDGK 559 (712)
T ss_pred Eeecc---C-ccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhh-----h-hhcccccCCc-ceeeeEccCCC
Confidence 10000 0 01123378888887643 4888889999999966432221 1 1111111112 23578999887
Q ss_pred eeEEEeCCCCeEEEEEcc
Q 023500 261 RLLASASDDGMIKIWELA 278 (281)
Q Consensus 261 ~~~~s~~~Dg~v~iw~~~ 278 (281)
+ |+++++|..|+||+..
T Consensus 560 ~-IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 560 H-IVSASEDSWVYIWKND 576 (712)
T ss_pred E-EEEeecCceEEEEeCC
Confidence 5 6689999999999973
No 38
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=5.6e-30 Score=232.23 Aligned_cols=248 Identities=20% Similarity=0.288 Sum_probs=190.8
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCC----ce--eeeeeecCCCCCeeEEEEcC-CCCEEEEecCCCcEEEE
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGG----DY--ECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIW 74 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~----~~--~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~~w 74 (281)
|...|.+++|+|+|++||+|+.|+.|+||+.... .. .+...+. +...|.+++|+| ++.+|++++.|++|++|
T Consensus 482 ~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lW 560 (793)
T PLN00181 482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVW 560 (793)
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEE
Confidence 6788999999999999999999999999986421 00 1122333 356789999987 57899999999999999
Q ss_pred EecCCCeeEEeEeecCCccceeEEEecC-CCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEc-
Q 023500 75 EVMPGNEFECVSVLQGHAQDVKMVQWHP-TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN- 152 (281)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~- 152 (281)
|+...+ .+..+.+|...|.+++|+| ++.+|++|+.|++|++|++.... ++..+. +...+.++.|+
T Consensus 561 d~~~~~---~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~-----~~~~~~-----~~~~v~~v~~~~ 627 (793)
T PLN00181 561 DVARSQ---LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV-----SIGTIK-----TKANICCVQFPS 627 (793)
T ss_pred ECCCCe---EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc-----EEEEEe-----cCCCeEEEEEeC
Confidence 986543 4567789999999999997 67899999999999999986542 233332 23568899995
Q ss_pred cCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcC
Q 023500 153 AKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLID 232 (281)
Q Consensus 153 ~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 232 (281)
+++.+|++|+.|+.|++||+..... ....+. .|...|.++.|.+...+++++.|+.+++|+.......
T Consensus 628 ~~g~~latgs~dg~I~iwD~~~~~~----------~~~~~~-~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~- 695 (793)
T PLN00181 628 ESGRSLAFGSADHKVYYYDLRNPKL----------PLCTMI-GHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISG- 695 (793)
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCc----------cceEec-CCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccc-
Confidence 5688999999999999999863211 111222 4778899999987788999999999999987532100
Q ss_pred CccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 233 GPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 233 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
.....+....+|...++.++|+|++. +|++|+.|+.|++|+..
T Consensus 696 --~~~~~l~~~~gh~~~i~~v~~s~~~~-~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 696 --INETPLHSFMGHTNVKNFVGLSVSDG-YIATGSETNEVFVYHKA 738 (793)
T ss_pred --cCCcceEEEcCCCCCeeEEEEcCCCC-EEEEEeCCCEEEEEECC
Confidence 00112334567889999999999875 78999999999999964
No 39
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.8e-32 Score=209.59 Aligned_cols=233 Identities=24% Similarity=0.481 Sum_probs=184.3
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCee
Q 023500 3 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF 82 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~ 82 (281)
.+.|.|+.+ |.+.+++|..|++|+|||.+.. .++..+.||++.|.|+.| +.+.|++||.|-+|++||+++++
T Consensus 197 skgVYClQY--DD~kiVSGlrDnTikiWD~n~~--~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge-- 268 (499)
T KOG0281|consen 197 SKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSL--ECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGE-- 268 (499)
T ss_pred CCceEEEEe--cchhhhcccccCceEEeccccH--HHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCc--
Confidence 467888887 4567889999999999997654 578899999999999988 45699999999999999998775
Q ss_pred EEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee
Q 023500 83 ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS 162 (281)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 162 (281)
++.++-.|.++|-.+.|+. .+++++|.|.++.+|++..+.. .++..-..||.+.|+.++|+ .+++++++
T Consensus 269 -~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~------it~rrVLvGHrAaVNvVdfd--~kyIVsAS 337 (499)
T KOG0281|consen 269 -PLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTD------ITLRRVLVGHRAAVNVVDFD--DKYIVSAS 337 (499)
T ss_pred -hhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchH------HHHHHHHhhhhhheeeeccc--cceEEEec
Confidence 5778889999999998865 5899999999999999876531 11222335899999999996 45999999
Q ss_pred CCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeeee
Q 023500 163 DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKK 242 (281)
Q Consensus 163 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (281)
.|.+|++|++....+. .....|.+.|-|+++ .+.++++|++|.++++|+...+ .++..
T Consensus 338 gDRTikvW~~st~efv------------Rtl~gHkRGIAClQY-r~rlvVSGSSDntIRlwdi~~G---------~cLRv 395 (499)
T KOG0281|consen 338 GDRTIKVWSTSTCEFV------------RTLNGHKRGIACLQY-RDRLVVSGSSDNTIRLWDIECG---------ACLRV 395 (499)
T ss_pred CCceEEEEeccceeee------------hhhhcccccceehhc-cCeEEEecCCCceEEEEecccc---------HHHHH
Confidence 9999999998643321 111235666666554 3557899999999999977543 23445
Q ss_pred ccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 243 EKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 243 ~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
..+|+.-|+++.|.. ++ +++|+.||+|+|||+..
T Consensus 396 LeGHEeLvRciRFd~--kr-IVSGaYDGkikvWdl~a 429 (499)
T KOG0281|consen 396 LEGHEELVRCIRFDN--KR-IVSGAYDGKIKVWDLQA 429 (499)
T ss_pred HhchHHhhhheeecC--ce-eeeccccceEEEEeccc
Confidence 678999999999984 34 67999999999999864
No 40
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.7e-30 Score=213.90 Aligned_cols=242 Identities=22% Similarity=0.428 Sum_probs=196.9
Q ss_pred ccceeEEEEcCCCCEEEEeeCC-CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 3 TRTVRSCAWSPSGKLLATASFD-ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d-~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
+..|..++|+..|..+|.|+.- |.+-+|+.....+ +...++|-..+.+++++|||++|+||+.|+.|++||.+.+
T Consensus 307 ~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY--VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg-- 382 (893)
T KOG0291|consen 307 DQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY--VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG-- 382 (893)
T ss_pred cceeeEEEecccCCEEEEcCCccceEEEEEeeccce--eeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc--
Confidence 3678899999999999988755 7999999877655 4455799999999999999999999999999999998755
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
-|..++..|.+.|+.++|+..++.+++.|-||+|+.||+.+- ++.+++.. ..+.+..|++..|.|+.+..|
T Consensus 383 -fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY-----rNfRTft~---P~p~QfscvavD~sGelV~AG 453 (893)
T KOG0291|consen 383 -FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY-----RNFRTFTS---PEPIQFSCVAVDPSGELVCAG 453 (893)
T ss_pred -eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc-----ceeeeecC---CCceeeeEEEEcCCCCEEEee
Confidence 588899999999999999999999999999999999987643 34555542 224556789999999999999
Q ss_pred eCCC-cEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceee
Q 023500 162 SDDL-TIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKML 239 (281)
Q Consensus 162 ~~d~-~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 239 (281)
+.|. .|.+|+.+.++. +-.+ ..|+.||.++++++.+ .+++++.|+++++|++-.. ..
T Consensus 454 ~~d~F~IfvWS~qTGql-----------lDiL-sGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s-----~~---- 512 (893)
T KOG0291|consen 454 AQDSFEIFVWSVQTGQL-----------LDIL-SGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS-----SG---- 512 (893)
T ss_pred ccceEEEEEEEeecCee-----------eehh-cCCCCcceeeEEccccCeEEeccccceEEEEEeecc-----Cc----
Confidence 9887 788999876542 2222 3599999999999876 6889999999999966321 11
Q ss_pred eeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 240 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 240 ~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
..+.-.+...+++++|.|+|+. +|.+..||.|.+||...
T Consensus 513 ~vEtl~i~sdvl~vsfrPdG~e-laVaTldgqItf~d~~~ 551 (893)
T KOG0291|consen 513 TVETLEIRSDVLAVSFRPDGKE-LAVATLDGQITFFDIKE 551 (893)
T ss_pred eeeeEeeccceeEEEEcCCCCe-EEEEEecceEEEEEhhh
Confidence 1112245678999999999976 78899999999999754
No 41
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.98 E-value=7.7e-32 Score=207.15 Aligned_cols=243 Identities=26% Similarity=0.427 Sum_probs=195.9
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|++.|.|+.|. .+.+++|+.|.++++||.++++ +++++-+|.+.|.-+.|+. .+++|+|.|+++.+||+.....
T Consensus 236 HtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge--~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~ 309 (499)
T KOG0281|consen 236 HTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGE--PLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTD 309 (499)
T ss_pred CCCcEEeeecc--ceEEEecCCCceEEEEeccCCc--hhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchH
Confidence 88999999985 5699999999999999999884 6888899999999999975 6899999999999999977665
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
..+.+++.+|.+.|+.+.|.. .+++++|.|.+|++|++.+. .+++++ .+|+..+-|+.+ .++++++|
T Consensus 310 it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~~st~-----efvRtl----~gHkRGIAClQY--r~rlvVSG 376 (499)
T KOG0281|consen 310 ITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTC-----EFVRTL----NGHKRGIACLQY--RDRLVVSG 376 (499)
T ss_pred HHHHHHHhhhhhheeeecccc--ceEEEecCCceEEEEeccce-----eeehhh----hcccccceehhc--cCeEEEec
Confidence 556678899999999999865 49999999999999977654 355555 489999988887 46799999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLK 241 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 241 (281)
+.|.+|++||+..+.... . ...|+..|.++.|+. ..+++|+.||.+++|+.........+....++.
T Consensus 377 SSDntIRlwdi~~G~cLR--------v----LeGHEeLvRciRFd~-krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~ 443 (499)
T KOG0281|consen 377 SSDNTIRLWDIECGACLR--------V----LEGHEELVRCIRFDN-KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLR 443 (499)
T ss_pred CCCceEEEEeccccHHHH--------H----HhchHHhhhheeecC-ceeeeccccceEEEEecccccCCcccccchHHH
Confidence 999999999987654321 1 124778888998864 467899999999999886543322233333445
Q ss_pred eccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 242 KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 242 ~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
....|++.|-.+.|.. +.+++++-|.+|.|||+-+
T Consensus 444 ~lv~hsgRVFrLQFD~---fqIvsssHddtILiWdFl~ 478 (499)
T KOG0281|consen 444 TLVEHSGRVFRLQFDE---FQIISSSHDDTILIWDFLN 478 (499)
T ss_pred hhhhccceeEEEeecc---eEEEeccCCCeEEEEEcCC
Confidence 5667999999999974 3477999999999999865
No 42
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.98 E-value=1.1e-30 Score=197.99 Aligned_cols=258 Identities=23% Similarity=0.375 Sum_probs=195.0
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCC------------C----ceeeeeeecCCCCCeeEEEEcCCCCEEEEe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVG------------G----DYECVATLEGHENEVKSVSWNASGTLLATC 65 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~------------~----~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~ 65 (281)
|+.++++.+|+|||.++|||+.|.+|+|.|... + .-..+.++-.|.++|+++.|+|....|++|
T Consensus 111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~ 190 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISG 190 (430)
T ss_pred cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEec
Confidence 788999999999999999999999999999651 0 112356777899999999999999999999
Q ss_pred cCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCcccc
Q 023500 66 GRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSST 145 (281)
Q Consensus 66 ~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~ 145 (281)
+.|++|++||+.........+++ .-...|+++.|||.|.+++.|..-.++++||++.. +|..... +..+|++.
T Consensus 191 srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~-----Qcfvsan-Pd~qht~a 263 (430)
T KOG0640|consen 191 SRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTY-----QCFVSAN-PDDQHTGA 263 (430)
T ss_pred cCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCceEEEecCCCceeEEeccce-----eEeeecC-cccccccc
Confidence 99999999998644322222223 23567999999999999999999999999988753 3444333 44679999
Q ss_pred EEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecc-cCcceEEEEeCCCc-eeeecCCCCcEEEE
Q 023500 146 IWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGY-HDRTIFSVHWSREG-IIASGAADDSVQFF 223 (281)
Q Consensus 146 v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~-~~~~~~~d~~~~~~ 223 (281)
|+++.+++.+.+.++++.||.|++||--..++. .++... ....|++..|..++ ++++.+.|..+++|
T Consensus 264 i~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv-----------~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLW 332 (430)
T KOG0640|consen 264 ITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCV-----------RTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLW 332 (430)
T ss_pred eeEEEecCCccEEEEeccCCcEEeeccccHHHH-----------HHHHhhcCCceeeeEEEccCCeEEeecCCcceeeee
Confidence 999999999999999999999999985432221 111112 34678888888776 67888899999999
Q ss_pred ecccCCCcC---------------------C-------------------ccceeeeeeccCCCCCeeEEEEcCCCCeeE
Q 023500 224 VESKDDLID---------------------G-------------------PSYKMLLKKEKAHDMDVNSVQWSPGERRLL 263 (281)
Q Consensus 224 ~~~~~~~~~---------------------~-------------------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 263 (281)
.+..+.... . ....+...-..+|.+.++.+..+|.++ .|
T Consensus 333 Ei~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p-~F 411 (430)
T KOG0640|consen 333 EISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEP-AF 411 (430)
T ss_pred eecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCC-ce
Confidence 654321110 0 000000111346999999999999887 47
Q ss_pred EEeCCCCeEEEEEcc
Q 023500 264 ASASDDGMIKIWELA 278 (281)
Q Consensus 264 ~s~~~Dg~v~iw~~~ 278 (281)
++|+.|-..|+|-.+
T Consensus 412 mTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 412 MTCSDDFRARFWYRR 426 (430)
T ss_pred eeecccceeeeeeec
Confidence 799999999999754
No 43
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=3.2e-30 Score=218.86 Aligned_cols=253 Identities=24% Similarity=0.401 Sum_probs=198.0
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|.++|+.++|+|++.+|++||.|-.|++|+..+. .|+.++.||-+.|..+.|++.-.+|+|+|+|.+|++|+.++.+
T Consensus 50 HdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r--rclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~- 126 (1202)
T KOG0292|consen 50 HDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR--RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK- 126 (1202)
T ss_pred cCCccceeeecCCCCeEEecCCccEEEEEecccc--eehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc-
Confidence 8899999999999999999999999999987665 5789999999999999999999999999999999999997664
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceee---------e---ee--------eeccCC
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCV---------Q---TI--------SESNNG 141 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~---------~---~~--------~~~~~~ 141 (281)
++.+++||...|.|.+|||+..+++|+|-|-+|++||+...+....... + .+ .....|
T Consensus 127 --~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEG 204 (1202)
T KOG0292|consen 127 --CIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEG 204 (1202)
T ss_pred --eEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecc
Confidence 7889999999999999999999999999999999999864321111000 0 00 012358
Q ss_pred ccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC-CceeeecCCCCcE
Q 023500 142 HSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSV 220 (281)
Q Consensus 142 h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~d~~~ 220 (281)
|...|+-++|+|.-..+++|+.|..|++|-+.-. +.|..- ..-.|...|.++-|+| ..++++.+.|+++
T Consensus 205 HDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnet--------KaWEvD--tcrgH~nnVssvlfhp~q~lIlSnsEDksi 274 (1202)
T KOG0292|consen 205 HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET--------KAWEVD--TCRGHYNNVSSVLFHPHQDLILSNSEDKSI 274 (1202)
T ss_pred cccccceEEecCCcceEEecCCcceeeEEEeccc--------cceeeh--hhhcccCCcceEEecCccceeEecCCCccE
Confidence 9999999999999999999999999999965321 112211 1124778899999998 4688999999999
Q ss_pred EEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 221 QFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
++|+..+.. . ...+. .. ..+-+.++-+|.. +++ .++-|+-+.+|.+..+
T Consensus 275 rVwDm~kRt-----~-v~tfr--re-ndRFW~laahP~l-NLf-AAgHDsGm~VFkleRE 323 (1202)
T KOG0292|consen 275 RVWDMTKRT-----S-VQTFR--RE-NDRFWILAAHPEL-NLF-AAGHDSGMIVFKLERE 323 (1202)
T ss_pred EEEeccccc-----c-eeeee--cc-CCeEEEEEecCCc-cee-eeecCCceEEEEEccc
Confidence 999776421 1 11111 22 2457888899965 566 4666777778887654
No 44
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.98 E-value=8.4e-29 Score=198.28 Aligned_cols=242 Identities=37% Similarity=0.622 Sum_probs=194.0
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|++++|+|++++|++++.|+.+.+|+..++. ....+.+|...+..+.|+|++++|++++.|+.|++|++....
T Consensus 8 h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~- 84 (289)
T cd00200 8 HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE--LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGE- 84 (289)
T ss_pred cCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC--cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCccc-
Confidence 78999999999999999999999999999987654 355667899999999999999999999999999999997543
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
....+..|...+.++.|+|++.++++++.|+.+++|++.... ....+ ..|...+.++.|+|++.+++++
T Consensus 85 --~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~----~~~~~~i~~~~~~~~~~~l~~~ 153 (289)
T cd00200 85 --CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK-----CLTTL----RGHTDWVNSVAFSPDGTFVASS 153 (289)
T ss_pred --ceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE-----EEEEe----ccCCCcEEEEEEcCcCCEEEEE
Confidence 345566788889999999998888888889999999886431 22222 2577889999999998889888
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 240 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 240 (281)
+.|+.+++||....+. ...+. .+...+.++.+++++ .+++++.++.+++|+.... ...
T Consensus 154 ~~~~~i~i~d~~~~~~-----------~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---------~~~ 212 (289)
T cd00200 154 SQDGTIKLWDLRTGKC-----------VATLT-GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG---------KCL 212 (289)
T ss_pred cCCCcEEEEEcccccc-----------ceeEe-cCccccceEEECCCcCEEEEecCCCcEEEEECCCC---------cee
Confidence 8899999999863221 11122 356688999999987 7778888999999977542 122
Q ss_pred eeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 241 ~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
.....|...+.++.|+|++ .++++++.||.|++|++..
T Consensus 213 ~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~i~~~~~ 250 (289)
T cd00200 213 GTLRGHENGVNSVAFSPDG-YLLASGSEDGTIRVWDLRT 250 (289)
T ss_pred cchhhcCCceEEEEEcCCC-cEEEEEcCCCcEEEEEcCC
Confidence 2333677899999999984 5677888899999999863
No 45
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=4.2e-29 Score=189.02 Aligned_cols=267 Identities=22% Similarity=0.434 Sum_probs=197.8
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEec--CCCceeeeeeecCCCCCeeEEEEc-C-CCCEEEEecCCCcEEEEEec
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWED--VGGDYECVATLEGHENEVKSVSWN-A-SGTLLATCGRDKSVWIWEVM 77 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~--~~~~~~~~~~~~~h~~~v~~v~~~-~-~~~~l~s~~~d~~v~~w~~~ 77 (281)
|++-|.++.|++.|+++|||+.|+.++|||. .++.+.+....+.|.+.|..|.|. | -|+.+|++|.|+++.+|.-+
T Consensus 12 h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~ 91 (361)
T KOG2445|consen 12 HKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQ 91 (361)
T ss_pred CcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeec
Confidence 7888999999999999999999999999994 456778888899999999999994 4 59999999999999999863
Q ss_pred C------CCeeEEeEeecCCccceeEEEecCC--CCeEEEEecCCeEEEEeCCCCC-CCCceeeeeee---eccCCcccc
Q 023500 78 P------GNEFECVSVLQGHAQDVKMVQWHPT--MDVLFSCSYDNTIKVWWAEDTD-SDNWHCVQTIS---ESNNGHSST 145 (281)
Q Consensus 78 ~------~~~~~~~~~~~~~~~~v~~v~~~p~--~~~l~s~s~d~~v~~w~~~~~~-~~~~~~~~~~~---~~~~~h~~~ 145 (281)
. +..+....++......|+.|+|.|. |..+++++.||.+|||+..+.. ...|.....++ .+...+..+
T Consensus 92 ~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~ 171 (361)
T KOG2445|consen 92 EKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQP 171 (361)
T ss_pred ccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCc
Confidence 2 1233445667777888999999996 5579999999999999876542 23343322222 222345677
Q ss_pred EEEEEEccCC---CEEEEeeCC-----CcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC-----ceee
Q 023500 146 IWALSFNAKG---DKLVSCSDD-----LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE-----GIIA 212 (281)
Q Consensus 146 v~~~~~~~~~---~~l~s~~~d-----~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~ 212 (281)
..|+.|+|.. .+|+.|+.+ +.+.||.... +..+|..+..+. .+..+|..++|.|+ .+++
T Consensus 172 ~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e-------~~rKw~kva~L~-d~~dpI~di~wAPn~Gr~y~~lA 243 (361)
T KOG2445|consen 172 CFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNE-------NGRKWLKVAELP-DHTDPIRDISWAPNIGRSYHLLA 243 (361)
T ss_pred ceEEeeccccccCceEEEEcccCCccccceEEEEecC-------CcceeeeehhcC-CCCCcceeeeeccccCCceeeEE
Confidence 8899999853 578887766 3677884321 111233333333 47899999999985 3688
Q ss_pred ecCCCCcEEEEecccC-------CC----cCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 213 SGAADDSVQFFVESKD-------DL----IDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 213 ~~~~d~~~~~~~~~~~-------~~----~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
.++.|| +++|.++.. .. .........+.....|..+|+.+.|+-.|. +|++.|+||.||+|+..
T Consensus 244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGt-iLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGT-ILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeee-EEeecCCCceeeehhhh
Confidence 888899 999987631 01 111222233456778999999999999875 78899999999999854
No 46
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=2.6e-29 Score=202.28 Aligned_cols=250 Identities=22% Similarity=0.402 Sum_probs=178.3
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEE-------------------
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLL------------------- 62 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l------------------- 62 (281)
|..+++.+.|+|.|.|+|+|...|+++|||....+.....++..-.++|..++|++++++|
T Consensus 58 H~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG 137 (603)
T KOG0318|consen 58 HAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSG 137 (603)
T ss_pred ccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCC
Confidence 7788999999999999999999999999997554333333444444555555555555554
Q ss_pred --------------------------EEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeE
Q 023500 63 --------------------------ATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 116 (281)
Q Consensus 63 --------------------------~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v 116 (281)
+|||+|++|-+|. +.+++.......|..-|+|++|+|++..+++++.|+++
T Consensus 138 ~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffe---GPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki 214 (603)
T KOG0318|consen 138 NSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFE---GPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKI 214 (603)
T ss_pred CccceeeccceeEeeeeccCCCceEEEeccCCCeEEEee---CCCeeeeecccccccceeeEEECCCCCeEEEecCCccE
Confidence 4444444444443 22333345567899999999999999999999999999
Q ss_pred EEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeeccc
Q 023500 117 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYH 196 (281)
Q Consensus 117 ~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (281)
.+||-.+.+ .+..+.. ..+|.+.|.++.|+||++.++|++.|.++|+||+....... ....-....
T Consensus 215 ~iyDGktge-----~vg~l~~-~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~--------t~~~~~~v~ 280 (603)
T KOG0318|consen 215 YIYDGKTGE-----KVGELED-SDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVS--------TWPMGSTVE 280 (603)
T ss_pred EEEcCCCcc-----EEEEecC-CCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEE--------EeecCCchh
Confidence 999765443 3333432 46899999999999999999999999999999986543211 000000011
Q ss_pred CcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 197 DRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 197 ~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
++. ..+-|. +..+++.+.+|.+.++.....+ ......+|...|++++.+|+++ .|.+|+.||.|.-|+
T Consensus 281 dqq-vG~lWq-kd~lItVSl~G~in~ln~~d~~---------~~~~i~GHnK~ITaLtv~~d~~-~i~SgsyDG~I~~W~ 348 (603)
T KOG0318|consen 281 DQQ-VGCLWQ-KDHLITVSLSGTINYLNPSDPS---------VLKVISGHNKSITALTVSPDGK-TIYSGSYDGHINSWD 348 (603)
T ss_pred ceE-EEEEEe-CCeEEEEEcCcEEEEecccCCC---------hhheecccccceeEEEEcCCCC-EEEeeccCceEEEEe
Confidence 222 233444 6778888999999999654321 1233468999999999999986 467999999999999
Q ss_pred cccC
Q 023500 277 LANT 280 (281)
Q Consensus 277 ~~~~ 280 (281)
....
T Consensus 349 ~~~g 352 (603)
T KOG0318|consen 349 SGSG 352 (603)
T ss_pred cCCc
Confidence 8653
No 47
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=8.1e-31 Score=193.13 Aligned_cols=242 Identities=26% Similarity=0.416 Sum_probs=185.0
Q ss_pred CccceeEEEEcC---CCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 023500 2 HTRTVRSCAWSP---SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP 78 (281)
Q Consensus 2 h~~~i~~~~~~~---~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~ 78 (281)
|+++|..++|+| +|-+|++++.|+.=-|-+-.++++ +.+++||.+.|+...++.+-.+.+++++|-+.++||...
T Consensus 13 htrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdw--igtfeghkgavw~~~l~~na~~aasaaadftakvw~a~t 90 (334)
T KOG0278|consen 13 HTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDW--IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVT 90 (334)
T ss_pred CCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCc--EEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhh
Confidence 889999999987 677899999999877766666765 789999999999999999999999999999999999877
Q ss_pred CCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEE
Q 023500 79 GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158 (281)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 158 (281)
+.+. .. ..|...|..++|+.+.++|++|+.+.-++++++++.+- ......+|++.|..+.|-.....+
T Consensus 91 gdel---hs-f~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~A--------pp~E~~ghtg~Ir~v~wc~eD~~i 158 (334)
T KOG0278|consen 91 GDEL---HS-FEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA--------PPKEISGHTGGIRTVLWCHEDKCI 158 (334)
T ss_pred hhhh---hh-hhhhheeeeEEecccchhhhccchHHHhhhhhccCCCC--------CchhhcCCCCcceeEEEeccCceE
Confidence 7642 22 35788899999999999999999999999998876531 112235899999999998888889
Q ss_pred EEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-----------------------------
Q 023500 159 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG----------------------------- 209 (281)
Q Consensus 159 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------------------------- 209 (281)
++...|++||+||........... ...+|.++..+++|
T Consensus 159 LSSadd~tVRLWD~rTgt~v~sL~-------------~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~ 225 (334)
T KOG0278|consen 159 LSSADDKTVRLWDHRTGTEVQSLE-------------FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPC 225 (334)
T ss_pred EeeccCCceEEEEeccCcEEEEEe-------------cCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCcc
Confidence 998999999999987544221100 12233333333333
Q ss_pred ------------eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 210 ------------IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 210 ------------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
.+++|+.|..++.|+...+. .+-...++|-++|.|+.|+|+|. ++++||+||+||||++
T Consensus 226 nV~SASL~P~k~~fVaGged~~~~kfDy~Tge--------Ei~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 226 NVESASLHPKKEFFVAGGEDFKVYKFDYNTGE--------EIGSYNKGHFGPVHCVRFSPDGE-LYASGSEDGTIRLWQT 296 (334)
T ss_pred ccccccccCCCceEEecCcceEEEEEeccCCc--------eeeecccCCCCceEEEEECCCCc-eeeccCCCceEEEEEe
Confidence 45555555555555443221 11112478999999999999885 7899999999999997
Q ss_pred cc
Q 023500 278 AN 279 (281)
Q Consensus 278 ~~ 279 (281)
..
T Consensus 297 ~~ 298 (334)
T KOG0278|consen 297 TP 298 (334)
T ss_pred cC
Confidence 54
No 48
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=1.2e-29 Score=196.71 Aligned_cols=248 Identities=28% Similarity=0.449 Sum_probs=191.6
Q ss_pred CccceeEEEEcCCCC---EEEEeeCCCcEEEEecCCCce--eeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEe
Q 023500 2 HTRTVRSCAWSPSGK---LLATASFDATTCIWEDVGGDY--ECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEV 76 (281)
Q Consensus 2 h~~~i~~~~~~~~~~---~l~tg~~d~~i~lw~~~~~~~--~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~ 76 (281)
|..+|..++|.-... .|++++.|.+++||..+.++. +.++...||...|-+|+..++|.++++||.|.++++|+.
T Consensus 143 ht~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~ 222 (423)
T KOG0313|consen 143 HTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSV 222 (423)
T ss_pred CCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeeccc
Confidence 778888777665443 599999999999998765432 233444599999999999999999999999999999993
Q ss_pred cCCC----------------------eeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeee
Q 023500 77 MPGN----------------------EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQT 134 (281)
Q Consensus 77 ~~~~----------------------~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~ 134 (281)
.... ...++..+.+|...|.+|.|++ ...++++|+|.+|+.||++.... +.+
T Consensus 223 ~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~-----~~~ 296 (423)
T KOG0313|consen 223 ETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGL-----KST 296 (423)
T ss_pred CCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccc-----eee
Confidence 2211 1123456789999999999999 77899999999999999987642 222
Q ss_pred eeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC--ceee
Q 023500 135 ISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE--GIIA 212 (281)
Q Consensus 135 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~ 212 (281)
+. -+...++++++|...+|++|+.|..+++||.+.+.-. ....++. .|...|.++.|+|. .+++
T Consensus 297 ~~-----~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs--------~v~~s~~-gH~nwVssvkwsp~~~~~~~ 362 (423)
T KOG0313|consen 297 LT-----TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGS--------VVSQSLI-GHKNWVSSVKWSPTNEFQLV 362 (423)
T ss_pred ee-----cCcceeEeecccccceeeecCCCCceeecCCCCCCCc--------eeEEeee-cchhhhhheecCCCCceEEE
Confidence 21 2466889999999999999999999999998754210 1122333 47789999999985 5799
Q ss_pred ecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 213 SGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 213 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
+++.|+.+++|+++.- +.-+....+|...|.++.|+.. .++++||.|.+|+|++-.+
T Consensus 363 S~S~D~t~klWDvRS~--------k~plydI~~h~DKvl~vdW~~~--~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 363 SGSYDNTVKLWDVRST--------KAPLYDIAGHNDKVLSVDWNEG--GLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred EEecCCeEEEEEeccC--------CCcceeeccCCceEEEEeccCC--ceEEeccCcceEEEecccc
Confidence 9999999999977642 1113344578999999999863 3688999999999997543
No 49
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=1.7e-28 Score=208.28 Aligned_cols=249 Identities=20% Similarity=0.303 Sum_probs=173.2
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCcee-----------eeeeecCCCCCeeEEEEcC-CCCEEEEecCCCcE
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYE-----------CVATLEGHENEVKSVSWNA-SGTLLATCGRDKSV 71 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~-----------~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v 71 (281)
..|+....++++..+++++.+.....|+..++... ....+.+|.+.|.+++|+| ++++|++||.|++|
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI 100 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI 100 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence 34566667778777777777777777865433110 0123678999999999999 88999999999999
Q ss_pred EEEEecCCCe----eEEeEeecCCccceeEEEecCCC-CeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccE
Q 023500 72 WIWEVMPGNE----FECVSVLQGHAQDVKMVQWHPTM-DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTI 146 (281)
Q Consensus 72 ~~w~~~~~~~----~~~~~~~~~~~~~v~~v~~~p~~-~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v 146 (281)
++||+..... ..++..+.+|...|.+++|+|++ ++|++++.|++|++||++... .+..+ .+|...|
T Consensus 101 kIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~-----~~~~l----~~h~~~V 171 (493)
T PTZ00421 101 MGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK-----AVEVI----KCHSDQI 171 (493)
T ss_pred EEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe-----EEEEE----cCCCCce
Confidence 9999965421 13456788999999999999985 689999999999999987542 22222 3688899
Q ss_pred EEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCc-ceEEEEeCCC-ceeeec----CCCCcE
Q 023500 147 WALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDR-TIFSVHWSRE-GIIASG----AADDSV 220 (281)
Q Consensus 147 ~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~-~~~~~~----~~d~~~ 220 (281)
.+++|+|++.+|++++.|++|++||.+..+. ...+.. |.. ....+.|.++ +.++++ +.|+.+
T Consensus 172 ~sla~spdG~lLatgs~Dg~IrIwD~rsg~~-----------v~tl~~-H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~V 239 (493)
T PTZ00421 172 TSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI-----------VSSVEA-HASAKSQRCLWAKRKDLIITLGCSKSQQRQI 239 (493)
T ss_pred EEEEEECCCCEEEEecCCCEEEEEECCCCcE-----------EEEEec-CCCCcceEEEEcCCCCeEEEEecCCCCCCeE
Confidence 9999999999999999999999999864321 112222 322 2334455554 444443 347899
Q ss_pred EEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 221 QFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
++|+.+.... ... .....+...+....|++++..+++++..|+.|++||+.+.
T Consensus 240 klWDlr~~~~----p~~---~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 240 MLWDTRKMAS----PYS---TVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred EEEeCCCCCC----cee---EeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 9998753210 111 1111223345566788887654444446999999998753
No 50
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.1e-29 Score=207.45 Aligned_cols=239 Identities=26% Similarity=0.438 Sum_probs=190.5
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecC-CCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 3 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEG-HENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
...|+++.|+++|++||.|..+|.+.|||....+ .+..+.+ |...|-+++|+ +..+.+|+.|+.|..+|++..+.
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k--~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~ 292 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQK--KTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQH 292 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhcc--ccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchh
Confidence 5789999999999999999999999999986553 3556777 99999999998 67899999999999999986653
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC-CCEEEE
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK-GDKLVS 160 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s 160 (281)
. ..++.+|...|+.++|++++.++++|+.|+.+.|||..... ...++ ..|.+.|.+++|+|- ...||+
T Consensus 293 ~--~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~-----p~~~~----~~H~aAVKA~awcP~q~~lLAs 361 (484)
T KOG0305|consen 293 V--VSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE-----PKFTF----TEHTAAVKALAWCPWQSGLLAT 361 (484)
T ss_pred h--hhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc-----ccEEE----eccceeeeEeeeCCCccCceEE
Confidence 2 22478999999999999999999999999999999873322 12222 369999999999994 458888
Q ss_pred ee--CCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc--eeee-cCCCCcEEEEecccCCCcCCcc
Q 023500 161 CS--DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIAS-GAADDSVQFFVESKDDLIDGPS 235 (281)
Q Consensus 161 ~~--~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~-~~~d~~~~~~~~~~~~~~~~~~ 235 (281)
|+ .|+.|++||+..+.... .......|+++.|++.. ++.+ |..++.+.+|....
T Consensus 362 GGGs~D~~i~fwn~~~g~~i~-------------~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps-------- 420 (484)
T KOG0305|consen 362 GGGSADRCIKFWNTNTGARID-------------SVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS-------- 420 (484)
T ss_pred cCCCcccEEEEEEcCCCcEec-------------ccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc--------
Confidence 65 79999999987543221 11235678999999865 4444 33677899996643
Q ss_pred ceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 236 YKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 236 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
...+....+|..+|..++++|++. .+++|+.|.++++|++..
T Consensus 421 -~~~~~~l~gH~~RVl~la~SPdg~-~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 421 -MKLVAELLGHTSRVLYLALSPDGE-TIVTGAADETLRFWNLFD 462 (484)
T ss_pred -cceeeeecCCcceeEEEEECCCCC-EEEEecccCcEEeccccC
Confidence 123445679999999999999986 478999999999999865
No 51
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=2.3e-28 Score=221.74 Aligned_cols=253 Identities=22% Similarity=0.300 Sum_probs=186.5
Q ss_pred ccceeEEEEcC-CCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcC-CCCEEEEecCCCcEEEEEecCCC
Q 023500 3 TRTVRSCAWSP-SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 3 ~~~i~~~~~~~-~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
...|.+++|+| ++.+||+++.|+.|+|||..+++ .+..+.+|.+.|++++|+| ++.+|++||.|++|++||+..+.
T Consensus 532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~--~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~ 609 (793)
T PLN00181 532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ--LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV 609 (793)
T ss_pred cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe--EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc
Confidence 35678899988 47899999999999999987654 4677889999999999997 78999999999999999997654
Q ss_pred eeEEeEeecCCccceeEEEec-CCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWH-PTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV 159 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~-p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 159 (281)
+...+..+ ..+.++.|+ +++.++++|+.|+.|++||+..... .... ..+|...|.++.|. ++.+|+
T Consensus 610 ---~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~----~~~~----~~~h~~~V~~v~f~-~~~~lv 676 (793)
T PLN00181 610 ---SIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL----PLCT----MIGHSKTVSYVRFV-DSSTLV 676 (793)
T ss_pred ---EEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc----cceE----ecCCCCCEEEEEEe-CCCEEE
Confidence 34444444 568999995 5688999999999999999865321 1111 23788999999997 677999
Q ss_pred EeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC-ceeeecCCCCcEEEEecccCCCcCCc---c
Q 023500 160 SCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE-GIIASGAADDSVQFFVESKDDLIDGP---S 235 (281)
Q Consensus 160 s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~---~ 235 (281)
+++.|++|++||+...... . ....+..+. .|...+.++.++++ .++++|+.|+.+.+|+.......... .
T Consensus 677 s~s~D~~ikiWd~~~~~~~--~---~~~~l~~~~-gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~ 750 (793)
T PLN00181 677 SSSTDNTLKLWDLSMSISG--I---NETPLHSFM-GHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKT 750 (793)
T ss_pred EEECCCEEEEEeCCCCccc--c---CCcceEEEc-CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEeccc
Confidence 9999999999997532100 0 011222332 36677888888875 47889999999999976432111000 0
Q ss_pred ceee-eeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 236 YKML-LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 236 ~~~~-~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
.... ......|...|.+++|+|++. .+++|+.||.|+||++
T Consensus 751 ~~~~~~~~~~~~~~~V~~v~ws~~~~-~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 751 IDPVSGLEVDDASQFISSVCWRGQSS-TLVAANSTGNIKILEM 792 (793)
T ss_pred CCcccccccCCCCcEEEEEEEcCCCC-eEEEecCCCcEEEEec
Confidence 0000 001234566799999999876 5779999999999997
No 52
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5.5e-29 Score=188.94 Aligned_cols=238 Identities=21% Similarity=0.345 Sum_probs=186.6
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCC--EEEEecCCCcEEEEEecCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT--LLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~l~s~~~d~~v~~w~~~~~ 79 (281)
|...|+++|.+ |+++|+||.|.+|.|||..... .+..+-.|.+.|+++.|.+.-. .|++|++||.|.+|+.
T Consensus 42 H~~sitavAVs--~~~~aSGssDetI~IYDm~k~~--qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~--- 114 (362)
T KOG0294|consen 42 HAGSITALAVS--GPYVASGSSDETIHIYDMRKRK--QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRV--- 114 (362)
T ss_pred cccceeEEEec--ceeEeccCCCCcEEEEeccchh--hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEc---
Confidence 78899999994 9999999999999999986653 3567777999999999988654 8999999999999997
Q ss_pred CeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEE
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV 159 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 159 (281)
..+++...+++|...|+.++.||.+.+.++.+.|..+++|++-+.+.. .+..+ .+. ...+.|+|.|++++
T Consensus 115 ~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a---~v~~L-----~~~--at~v~w~~~Gd~F~ 184 (362)
T KOG0294|consen 115 GSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVA---FVLNL-----KNK--ATLVSWSPQGDHFV 184 (362)
T ss_pred CCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccc---eeecc-----CCc--ceeeEEcCCCCEEE
Confidence 455788999999999999999999999999999999999987665422 11112 122 24499999999999
Q ss_pred EeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceee
Q 023500 160 SCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKML 239 (281)
Q Consensus 160 s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 239 (281)
.+.+++ |-+|.++....... . .....+.++.|...+.+++|+.|+.+.+|+.... ..
T Consensus 185 v~~~~~-i~i~q~d~A~v~~~------------i-~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~---------~~ 241 (362)
T KOG0294|consen 185 VSGRNK-IDIYQLDNASVFRE------------I-ENPKRILCATFLDGSELLVGGDNEWISLKDTDSD---------TP 241 (362)
T ss_pred EEeccE-EEEEecccHhHhhh------------h-hccccceeeeecCCceEEEecCCceEEEeccCCC---------cc
Confidence 888875 88997653322110 0 0124467788888999999999999999976531 22
Q ss_pred eeeccCCCCCeeEEE-EcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 240 LKKEKAHDMDVNSVQ-WSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 240 ~~~~~~h~~~v~~~~-~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
.....+|+.+|.++. +......+|+|+|.||.|+|||+.-
T Consensus 242 ~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 242 LTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred ceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccc
Confidence 345668999999988 3332346889999999999999864
No 53
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.9e-29 Score=186.24 Aligned_cols=241 Identities=26% Similarity=0.455 Sum_probs=183.5
Q ss_pred eEEEEcC--CCCEE-EEee-----CCCcEEEEecC-CCceeeeeeecCCCCCeeEEEEcCC-CCEEEEecCCCcEEEEEe
Q 023500 7 RSCAWSP--SGKLL-ATAS-----FDATTCIWEDV-GGDYECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEV 76 (281)
Q Consensus 7 ~~~~~~~--~~~~l-~tg~-----~d~~i~lw~~~-~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~~w~~ 76 (281)
..+.|+| .+++. |++. ..|.+.|-+.. .........+. -.+.+..++|+++ .+.+++++.||++++||+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 4677888 44443 3332 34677787775 33333344444 4578999999995 678999999999999996
Q ss_pred cCCCeeEEeEeecCCccceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC-
Q 023500 77 MPGNEFECVSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK- 154 (281)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~- 154 (281)
... ..++..++.|..+|.++.|++... .++++|+|++||+|+.....+ +++ ..+|...|....|+|.
T Consensus 91 ~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S-----v~T----f~gh~~~Iy~a~~sp~~ 159 (311)
T KOG0277|consen 91 TMP--SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS-----VQT----FNGHNSCIYQAAFSPHI 159 (311)
T ss_pred CCC--CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc-----eEe----ecCCccEEEEEecCCCC
Confidence 433 246788999999999999999754 578889999999998876542 333 3589999999999994
Q ss_pred CCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC--CceeeecCCCCcEEEEecccCCCcC
Q 023500 155 GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR--EGIIASGAADDSVQFFVESKDDLID 232 (281)
Q Consensus 155 ~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~ 232 (281)
...+++++.|+++++||++... +.. ....|...+.++.|+. ..++++|+.|+.++.|+++.-.
T Consensus 160 ~nlfas~Sgd~~l~lwdvr~~g----------k~~--~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r--- 224 (311)
T KOG0277|consen 160 PNLFASASGDGTLRLWDVRSPG----------KFM--SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR--- 224 (311)
T ss_pred CCeEEEccCCceEEEEEecCCC----------cee--EEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc---
Confidence 5799999999999999976321 111 1223677899999985 5689999999999999886421
Q ss_pred CccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 233 GPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 233 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
.+ +....+|...|+.++|+|....+|||++.|-++|||+...
T Consensus 225 ~p-----l~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~ 266 (311)
T KOG0277|consen 225 TP-----LFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPER 266 (311)
T ss_pred cc-----ceeecCCceEEEEEecCcchhhHhhhccccceEEeccccc
Confidence 11 3344789999999999998888999999999999999764
No 54
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.1e-29 Score=186.52 Aligned_cols=253 Identities=29% Similarity=0.444 Sum_probs=195.3
Q ss_pred CCccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCc-eeeeeeecCCCCCeeEEEE-cC-CCCEEEEecCCCcEEEEEec
Q 023500 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGD-YECVATLEGHENEVKSVSW-NA-SGTLLATCGRDKSVWIWEVM 77 (281)
Q Consensus 1 ~h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~-~~~~~~~~~h~~~v~~v~~-~~-~~~~l~s~~~d~~v~~w~~~ 77 (281)
.|.+.|-.+...-.|++|||++.|++|+|+....+. ...+.++.||.++|+.++| +| .|.+|++++.||.|.+|.-.
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~ 88 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEE 88 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecC
Confidence 377788888888889999999999999999985544 3678899999999999999 55 79999999999999999977
Q ss_pred CCCeeEEeEeecCCccceeEEEecCCCC--eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC-
Q 023500 78 PGNEFECVSVLQGHAQDVKMVQWHPTMD--VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK- 154 (281)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~--~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~- 154 (281)
++ .+........|...|++++|-|.+- .|+.+|.||+|.+.+..... .+ . ......+|+-.|++++|.|.
T Consensus 89 ~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g--~w-~---t~ki~~aH~~GvnsVswapa~ 161 (299)
T KOG1332|consen 89 NG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG--GW-T---TSKIVFAHEIGVNSVSWAPAS 161 (299)
T ss_pred CC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC--Cc-c---chhhhhccccccceeeecCcC
Confidence 65 4445667788999999999999754 78999999999999876541 11 1 11223478899999999885
Q ss_pred --C-----------CEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC-----ceeeecCC
Q 023500 155 --G-----------DKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE-----GIIASGAA 216 (281)
Q Consensus 155 --~-----------~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~ 216 (281)
| +.|++|+.|..+++|+.+.. .|...+.+. .|...|+.++|.|. ..+++++.
T Consensus 162 ~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~---------~w~~e~~l~-~H~dwVRDVAwaP~~gl~~s~iAS~Sq 231 (299)
T KOG1332|consen 162 APGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD---------SWKLERTLE-GHKDWVRDVAWAPSVGLPKSTIASCSQ 231 (299)
T ss_pred CCccccccCcccccceeeccCCccceeeeecCCc---------chhhhhhhh-hcchhhhhhhhccccCCCceeeEEecC
Confidence 3 56999999999999987643 123333332 37888999998874 47999999
Q ss_pred CCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 217 DDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 217 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
|+.+.+|....+. .+-...++ ......+..++|++.| ++|+.++.|+.|.+|.-
T Consensus 232 Dg~viIwt~~~e~---e~wk~tll---~~f~~~~w~vSWS~sG-n~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 232 DGTVIIWTKDEEY---EPWKKTLL---EEFPDVVWRVSWSLSG-NILAVSGGDNKVTLWKE 285 (299)
T ss_pred CCcEEEEEecCcc---Cccccccc---ccCCcceEEEEEeccc-cEEEEecCCcEEEEEEe
Confidence 9999999665321 11111121 1234568999999976 57888888999999974
No 55
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.5e-29 Score=207.57 Aligned_cols=163 Identities=30% Similarity=0.487 Sum_probs=145.4
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcC-CCCEEEEecCCCcEEEEEecCCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
|.+.|++++.+|...+++|+|.|-+|++|+... .+.|..+++||..-|.+++|+| |.+.++|+|-|++|+||.+.+.
T Consensus 96 H~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~-~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~- 173 (794)
T KOG0276|consen 96 HSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN-EWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP- 173 (794)
T ss_pred cccceeeeeecCCCCeEEecCCccEEEEeeccC-ceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC-
Confidence 889999999999999999999999999998764 5778999999999999999999 7788999999999999998544
Q ss_pred eeEEeEeecCCccceeEEEecCCC--CeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTM--DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~--~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 158 (281)
.+-.++.+|...|+|+.+-|-+ .+++||+.|.++|+||..+. .|++++. ||...|.++.|+|.-..+
T Consensus 174 --~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-----~CV~TLe----GHt~Nvs~v~fhp~lpii 242 (794)
T KOG0276|consen 174 --HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-----SCVQTLE----GHTNNVSFVFFHPELPII 242 (794)
T ss_pred --CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH-----HHHHHhh----cccccceEEEecCCCcEE
Confidence 3567889999999999998755 48999999999999977653 5777775 899999999999999999
Q ss_pred EEeeCCCcEEEEeCCcccc
Q 023500 159 VSCSDDLTIKIWGADITRM 177 (281)
Q Consensus 159 ~s~~~d~~i~~w~~~~~~~ 177 (281)
++|+.||++|+|+..+.+.
T Consensus 243 isgsEDGTvriWhs~Ty~l 261 (794)
T KOG0276|consen 243 ISGSEDGTVRIWNSKTYKL 261 (794)
T ss_pred EEecCCccEEEecCcceeh
Confidence 9999999999998765443
No 56
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=2.6e-28 Score=194.10 Aligned_cols=240 Identities=26% Similarity=0.502 Sum_probs=190.5
Q ss_pred CCccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC
Q 023500 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 1 ~h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
.|.++|.++.|+..|.||++++.|+++.|||..++.. ...+.-|..+-..|.|-. ..-+++++.|+.|+|+.+....
T Consensus 274 ~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~--~q~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~ 350 (524)
T KOG0273|consen 274 QHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV--KQQFEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDR 350 (524)
T ss_pred ccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE--EEeeeeccCCccceEEec-CceEeecCCCceEEEEEecCCC
Confidence 3899999999999999999999999999999988754 445566777766788853 3568999999999999985443
Q ss_pred eeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCC-----
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG----- 155 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----- 155 (281)
++.++.+|...|.+++|+|.+.+|+++|.|++++||...... +...+ .+|...|..+.|+|++
T Consensus 351 ---P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~-----~~~~l----~~Hskei~t~~wsp~g~v~~n 418 (524)
T KOG0273|consen 351 ---PVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN-----SVHDL----QAHSKEIYTIKWSPTGPVTSN 418 (524)
T ss_pred ---cceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCc-----chhhh----hhhccceeeEeecCCCCccCC
Confidence 467788999999999999999999999999999999665432 22223 3788899999999854
Q ss_pred ----CEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCC
Q 023500 156 ----DKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDL 230 (281)
Q Consensus 156 ----~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~ 230 (281)
..+++++.|+++++||+..+. +++.+. .|..+|.+++|+|++ ++++|+.|+.+.+|..+...
T Consensus 419 ~~~~~~l~sas~dstV~lwdv~~gv-----------~i~~f~-kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~- 485 (524)
T KOG0273|consen 419 PNMNLMLASASFDSTVKLWDVESGV-----------PIHTLM-KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK- 485 (524)
T ss_pred CcCCceEEEeecCCeEEEEEccCCc-----------eeEeec-cCCCceEEEEecCCCcEEEecCCCCeeEeccccchh-
Confidence 579999999999999987442 334443 378999999999987 68899999999999665431
Q ss_pred cCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 231 IDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 231 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
+++. ..-...|..+.|+.+|.. +..+..|+.+++-|++
T Consensus 486 --------l~~s-~~~~~~Ifel~Wn~~G~k-l~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 486 --------LVKS-YQGTGGIFELCWNAAGDK-LGACASDGSVCVLDLR 523 (524)
T ss_pred --------eeEe-ecCCCeEEEEEEcCCCCE-EEEEecCCCceEEEec
Confidence 1222 223455899999998854 5666679999998875
No 57
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=5.9e-28 Score=193.38 Aligned_cols=239 Identities=36% Similarity=0.637 Sum_probs=188.4
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...+..+.|+|+++++++++.|+.+.+|+...++ ....+.+|...+.++.|+|++.++++++.|+.+.+|++...+
T Consensus 50 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~- 126 (289)
T cd00200 50 HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGE--CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK- 126 (289)
T ss_pred CCcceeEEEECCCCCEEEEEcCCCeEEEEEcCccc--ceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE-
Confidence 56778899999999999999999999999987653 355677899999999999998899999989999999986443
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
....+..|...+.++.|+|++.++++++.|+.+++|++.... ....+ ..|...+.++.|+|+++.++++
T Consensus 127 --~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-----~~~~~----~~~~~~i~~~~~~~~~~~l~~~ 195 (289)
T cd00200 127 --CLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK-----CVATL----TGHTGEVNSVAFSPDGEKLLSS 195 (289)
T ss_pred --EEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc-----cceeE----ecCccccceEEECCCcCEEEEe
Confidence 345566888899999999998888888889999999886432 12222 2567789999999999999999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceee-ecCCCCcEEEEecccCCCcCCccceeee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIA-SGAADDSVQFFVESKDDLIDGPSYKMLL 240 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 240 (281)
+.|+.+++||....+.. ..+ ..+...+.++.+++++.++ +++.++.+++|+.... ...
T Consensus 196 ~~~~~i~i~d~~~~~~~-----------~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~---------~~~ 254 (289)
T cd00200 196 SSDGTIKLWDLSTGKCL-----------GTL-RGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG---------ECV 254 (289)
T ss_pred cCCCcEEEEECCCCcee-----------cch-hhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc---------eeE
Confidence 99999999998643211 111 1255688999999976544 4445999999976532 122
Q ss_pred eeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 241 ~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
.....|...|.++.|+|++. ++++++.||.+++|+
T Consensus 255 ~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iw~ 289 (289)
T cd00200 255 QTLSGHTNSVTSLAWSPDGK-RLASGSADGTIRIWD 289 (289)
T ss_pred EEccccCCcEEEEEECCCCC-EEEEecCCCeEEecC
Confidence 23347888999999999865 578999999999996
No 58
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=7.6e-29 Score=214.66 Aligned_cols=258 Identities=26% Similarity=0.457 Sum_probs=193.4
Q ss_pred ccceeEEEEcCCCCEEEEee--CCCcEEEEecCC----------CceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCc
Q 023500 3 TRTVRSCAWSPSGKLLATAS--FDATTCIWEDVG----------GDYECVATLEGHENEVKSVSWNASGTLLATCGRDKS 70 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~--~d~~i~lw~~~~----------~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~ 70 (281)
.+.|..++.+|+|..+|||+ .|+.++||+... .-.+.+..+..|.+.|+|+.|+|||.+||+||+|+.
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~ 92 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL 92 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcce
Confidence 46789999999999999999 999999997321 112346677889999999999999999999999999
Q ss_pred EEEEEecC---------------CCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeee
Q 023500 71 VWIWEVMP---------------GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTI 135 (281)
Q Consensus 71 v~~w~~~~---------------~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~ 135 (281)
|.+|.-.. -+.+.+...+.+|...|..++|+|++.+++++|.|++|.+|+... +.++..
T Consensus 93 v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~t-----F~~~~v- 166 (942)
T KOG0973|consen 93 VMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKT-----FELLKV- 166 (942)
T ss_pred EEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccc-----ceeeee-
Confidence 99998652 013456778999999999999999999999999999999995443 223333
Q ss_pred eeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCcc-------ccccC--------------C-------------
Q 023500 136 SESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADIT-------RMQSG--------------D------------- 181 (281)
Q Consensus 136 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~-------~~~~~--------------~------------- 181 (281)
..+|...|..+.|.|-|++|++=+.|++|++|.+..- ++... +
T Consensus 167 ---l~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~ 243 (942)
T KOG0973|consen 167 ---LRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGG 243 (942)
T ss_pred ---eecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCC
Confidence 3589999999999999999999999999999974310 00000 0
Q ss_pred -------CCcccceeEEeecccCcceEEEEeCCC------c------------eeeecCCCCcEEEEecccCCCcCCccc
Q 023500 182 -------GYASWRHLCTISGYHDRTIFSVHWSRE------G------------IIASGAADDSVQFFVESKDDLIDGPSY 236 (281)
Q Consensus 182 -------~~~~~~~~~~~~~~~~~~v~~~~~~~~------~------------~~~~~~~d~~~~~~~~~~~~~~~~~~~ 236 (281)
+...|+....+. .|..++.++.|.|. . ++|+|+.|+++-+|..... .|
T Consensus 244 ~~~~~IieR~tWk~~~~Lv-GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~----RP-- 316 (942)
T KOG0973|consen 244 KSTIAIIERGTWKVDKDLV-GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP----RP-- 316 (942)
T ss_pred cceeEEEecCCceeeeeee-cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC----Cc--
Confidence 001122222232 37788999988761 1 5788999999999965321 11
Q ss_pred eeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 237 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 237 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
++....-....|.+++|+|+|.. |..||.||+|.+..+..
T Consensus 317 --l~vi~~lf~~SI~DmsWspdG~~-LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 317 --LFVIHNLFNKSIVDMSWSPDGFS-LFACSLDGTVALIHFEE 356 (942)
T ss_pred --hhhhhhhhcCceeeeeEcCCCCe-EEEEecCCeEEEEEcch
Confidence 11112223457999999999875 55789999999988753
No 59
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=8.3e-29 Score=206.44 Aligned_cols=251 Identities=25% Similarity=0.372 Sum_probs=197.9
Q ss_pred cceeEEE-EcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC-e
Q 023500 4 RTVRSCA-WSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN-E 81 (281)
Q Consensus 4 ~~i~~~~-~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~-~ 81 (281)
+.|.++. +.|..++||.+++.+.+++|+..+... ..+.||++.|.+++...+|.+|+|||.|+++++|.+.+.. .
T Consensus 324 dEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c---~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~ 400 (775)
T KOG0319|consen 324 DEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC---QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSK 400 (775)
T ss_pred hhheeeeecCCccceEEEEeCCCceEEEecCCCce---EEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcch
Confidence 5566665 566778999999999999998766543 2678999999999965677899999999999999994332 2
Q ss_pred eEEeEeecCCccceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEE
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
..++....+|...|.+|+++-.+. .++++|.|+++++|++....................|...|++++++|+..+++|
T Consensus 401 ~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT 480 (775)
T KOG0319|consen 401 SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIAT 480 (775)
T ss_pred hhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEe
Confidence 345566789999999999966543 7899999999999988763222111111112223479999999999999999999
Q ss_pred eeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC-ceeeecCCCCcEEEEecccCCCcCCccceee
Q 023500 161 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE-GIIASGAADDSVQFFVESKDDLIDGPSYKML 239 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 239 (281)
|+.|.+.++|+.+. .+.+..++ .|.+.+.+++|++. ..+++++.|+++++|.+.. ..+
T Consensus 481 ~SqDktaKiW~le~-----------~~l~~vLs-GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~---------fSC 539 (775)
T KOG0319|consen 481 GSQDKTAKIWDLEQ-----------LRLLGVLS-GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST---------FSC 539 (775)
T ss_pred cccccceeeecccC-----------ceEEEEee-CCccceEEEEeccccceeEeccCCceEEEEEecc---------cee
Confidence 99999999998751 13344444 48999999999985 6789999999999996643 345
Q ss_pred eeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 240 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 240 ~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
++...+|...|..+.|-.++++ |+||+.||.++||++.+
T Consensus 540 lkT~eGH~~aVlra~F~~~~~q-liS~~adGliKlWnikt 578 (775)
T KOG0319|consen 540 LKTFEGHTSAVLRASFIRNGKQ-LISAGADGLIKLWNIKT 578 (775)
T ss_pred eeeecCccceeEeeeeeeCCcE-EEeccCCCcEEEEeccc
Confidence 6777899999999999998875 66999999999999865
No 60
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.9e-30 Score=198.11 Aligned_cols=251 Identities=24% Similarity=0.450 Sum_probs=180.5
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceee------eeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEec
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYEC------VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVM 77 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~------~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~ 77 (281)
.-+-|..|+|||++|++|+.||-|.+|+..+++... --.+--++.+|.|+.|+.|...+++|+.||.|++|.+.
T Consensus 214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~ 293 (508)
T KOG0275|consen 214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIE 293 (508)
T ss_pred cchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEe
Confidence 346788999999999999999999999987664321 11233478899999999999999999999999999998
Q ss_pred CCCeeEEeEeec-CCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCC
Q 023500 78 PGNEFECVSVLQ-GHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD 156 (281)
Q Consensus 78 ~~~~~~~~~~~~-~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 156 (281)
.+. |++.+. +|...|+|+.|+.++..+++++.|-++++.-+. +.+++.. ..||..-|+...|.++|.
T Consensus 294 tG~---ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK-----SGK~LKE----frGHsSyvn~a~ft~dG~ 361 (508)
T KOG0275|consen 294 TGQ---CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK-----SGKCLKE----FRGHSSYVNEATFTDDGH 361 (508)
T ss_pred cch---HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccc-----cchhHHH----hcCccccccceEEcCCCC
Confidence 764 666555 899999999999999999999999999998333 3334333 359999999999999999
Q ss_pred EEEEeeCCCcEEEEeCCccccccCC-----CCc--------ccce---eEE------eecccCcceEEE-----------
Q 023500 157 KLVSCSDDLTIKIWGADITRMQSGD-----GYA--------SWRH---LCT------ISGYHDRTIFSV----------- 203 (281)
Q Consensus 157 ~l~s~~~d~~i~~w~~~~~~~~~~~-----~~~--------~~~~---~~~------~~~~~~~~v~~~----------- 203 (281)
++++++.||++++|+.+...+...- .+. +... .|. +...+...|.++
T Consensus 362 ~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi 441 (508)
T KOG0275|consen 362 HIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFI 441 (508)
T ss_pred eEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceE
Confidence 9999999999999987654322110 000 0000 000 001122223322
Q ss_pred --EeCCCce-eeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 204 --HWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 204 --~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
..+|.|. +...+.|+.++.|....+. +-.....|+..|-.++.+|. ++++|+-++||.+++|.
T Consensus 442 ~~~lSpkGewiYcigED~vlYCF~~~sG~---------LE~tl~VhEkdvIGl~HHPH-qNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 442 NAILSPKGEWIYCIGEDGVLYCFSVLSGK---------LERTLPVHEKDVIGLTHHPH-QNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEEecCCCcEEEEEccCcEEEEEEeecCc---------eeeeeecccccccccccCcc-cchhhhhcccchhhhcC
Confidence 2233332 3445566666666443321 12234568888999999996 57899999999999996
No 61
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=2.7e-28 Score=184.22 Aligned_cols=248 Identities=23% Similarity=0.382 Sum_probs=172.9
Q ss_pred ccceeEEEEcCC-CCEEEEeeCCCcEEEEecCC-CceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC
Q 023500 3 TRTVRSCAWSPS-GKLLATASFDATTCIWEDVG-GDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 3 ~~~i~~~~~~~~-~~~l~tg~~d~~i~lw~~~~-~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
.+.|.+++|+|. ..+++.||+|++|++|++.. +.... +....|.++|.+++|+.+|..+++|+.|+.+++||+.+++
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence 478999999994 45677999999999999865 34433 5667799999999999999999999999999999998875
Q ss_pred eeEEeEeecCCccceeEEEecCCCC--eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTMD--VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~~--~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 158 (281)
...+..|...|.++.|-+... .|++||+|.++|.||..... .+.+++ -+++|.+++.-. .++
T Consensus 106 ----~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~-----pv~t~~-----LPeRvYa~Dv~~--pm~ 169 (347)
T KOG0647|consen 106 ----VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN-----PVATLQ-----LPERVYAADVLY--PMA 169 (347)
T ss_pred ----eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC-----eeeeee-----ccceeeehhccC--cee
Confidence 345678999999999988766 89999999999999876542 233332 246677766543 367
Q ss_pred EEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC-ceeeecCCCCcEEEEecccCCCcCCccce
Q 023500 159 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE-GIIASGAADDSVQFFVESKDDLIDGPSYK 237 (281)
Q Consensus 159 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 237 (281)
+.+..+..|.+|+++........- ..-..-.++|++..++ ...+.|+-+|.+.+..+......+.-.++
T Consensus 170 vVata~r~i~vynL~n~~te~k~~----------~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFk 239 (347)
T KOG0647|consen 170 VVATAERHIAVYNLENPPTEFKRI----------ESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFK 239 (347)
T ss_pred EEEecCCcEEEEEcCCCcchhhhh----------cCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEE
Confidence 788888999999875322111100 0001223455544432 23477888888888766543221111122
Q ss_pred eeeeeccC--CCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 238 MLLKKEKA--HDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 238 ~~~~~~~~--h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
........ --..|++|+|+|. ...|+|+|.||+..+||-.
T Consensus 240 CHR~~~~~~~~VYaVNsi~FhP~-hgtlvTaGsDGtf~FWDkd 281 (347)
T KOG0647|consen 240 CHRSTNSVNDDVYAVNSIAFHPV-HGTLVTAGSDGTFSFWDKD 281 (347)
T ss_pred EeccCCCCCCceEEecceEeecc-cceEEEecCCceEEEecch
Confidence 22111100 1235889999996 4568899999999999943
No 62
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=1.6e-27 Score=202.29 Aligned_cols=227 Identities=19% Similarity=0.336 Sum_probs=164.7
Q ss_pred CccceeEEEEcC-CCCEEEEeeCCCcEEEEecCCCc-----eeeeeeecCCCCCeeEEEEcCCC-CEEEEecCCCcEEEE
Q 023500 2 HTRTVRSCAWSP-SGKLLATASFDATTCIWEDVGGD-----YECVATLEGHENEVKSVSWNASG-TLLATCGRDKSVWIW 74 (281)
Q Consensus 2 h~~~i~~~~~~~-~~~~l~tg~~d~~i~lw~~~~~~-----~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~v~~w 74 (281)
|.+.|++++|+| ++++||+|+.|++|+|||..+.. ..++..+.+|...|.+++|+|++ .+|++|+.|++|++|
T Consensus 74 H~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIW 153 (493)
T PTZ00421 74 QEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVW 153 (493)
T ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEE
Confidence 788999999999 88999999999999999976432 13467789999999999999975 689999999999999
Q ss_pred EecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCcccc-EEEEEEcc
Q 023500 75 EVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSST-IWALSFNA 153 (281)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~ 153 (281)
|+..+. ....+.+|...|.+++|+|++.++++++.|++|++||+.... .+..+ .+|... +..+.|.+
T Consensus 154 Dl~tg~---~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~-----~v~tl----~~H~~~~~~~~~w~~ 221 (493)
T PTZ00421 154 DVERGK---AVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT-----IVSSV----EAHASAKSQRCLWAK 221 (493)
T ss_pred ECCCCe---EEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc-----EEEEE----ecCCCCcceEEEEcC
Confidence 997653 456678899999999999999999999999999999987542 22222 245443 44678888
Q ss_pred CCCEEEEee----CCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecC-CCCcEEEEeccc
Q 023500 154 KGDKLVSCS----DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGA-ADDSVQFFVESK 227 (281)
Q Consensus 154 ~~~~l~s~~----~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~-~d~~~~~~~~~~ 227 (281)
++..+++++ .|+.|++||++.... +...........+....+++++ ++++++ .|+.+++|+...
T Consensus 222 ~~~~ivt~G~s~s~Dr~VklWDlr~~~~----------p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 222 RKDLIITLGCSKSQQRQIMLWDTRKMAS----------PYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred CCCeEEEEecCCCCCCeEEEEeCCCCCC----------ceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence 877777654 478999999753211 1111111112234445567665 455555 699999998764
Q ss_pred CCCcCCccceeeeeeccCCCCCeeEEEEcCC
Q 023500 228 DDLIDGPSYKMLLKKEKAHDMDVNSVQWSPG 258 (281)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 258 (281)
+.. .......+..++..++|.|.
T Consensus 292 ~~~--------~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 292 ERL--------TFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred Cce--------EEEeeccCCCCCcceEeccc
Confidence 321 11112234556778888884
No 63
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=4.3e-28 Score=182.93 Aligned_cols=243 Identities=26% Similarity=0.397 Sum_probs=191.4
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCC-EEEEecCCCcEEEEEecCCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT-LLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~v~~w~~~~~~ 80 (281)
|...|..+.|.+|+..+++++.|..++.||..+++ +...+++|.+-|+.+.-+.-|. ++.|+++|+++++||++...
T Consensus 89 HsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~--~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~ 166 (338)
T KOG0265|consen 89 HSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGK--RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE 166 (338)
T ss_pred ccceeEeeeeccCCCEEEEecCCceEEEEecccce--eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc
Confidence 78899999999999999999999999999998885 5778889999999998443444 57789999999999997443
Q ss_pred eeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
++.++. ...+++++.|..++..+++|+-|+.|++||+...+ .... ..||...|+.+..+|+|.++.+
T Consensus 167 ---~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d-----~~~~----lsGh~DtIt~lsls~~gs~lls 233 (338)
T KOG0265|consen 167 ---AIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKND-----GLYT----LSGHADTITGLSLSRYGSFLLS 233 (338)
T ss_pred ---hhhccc-cceeEEEEEecccccceeeccccCceeeeccccCc-----ceEE----eecccCceeeEEeccCCCcccc
Confidence 333332 35568999999999999999999999999886543 2222 3589999999999999999999
Q ss_pred eeCCCcEEEEeCCccccccCCCCcccceeEEeecc---cCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccc
Q 023500 161 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGY---HDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSY 236 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~ 236 (281)
-+.|.++++||.+...+. .+.+..+.+. .+.....++|+|++ .+.+|+.|+.+.+|+...
T Consensus 234 nsMd~tvrvwd~rp~~p~-------~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~--------- 297 (338)
T KOG0265|consen 234 NSMDNTVRVWDVRPFAPS-------QRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTS--------- 297 (338)
T ss_pred ccccceEEEEEecccCCC-------CceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccc---------
Confidence 999999999998643221 1222222221 23445677899876 567788999999996643
Q ss_pred eeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 237 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 237 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
..++....+|...|+++.|+|..+ ++.+++.|.+|.+=+
T Consensus 298 r~~lyklpGh~gsvn~~~Fhp~e~-iils~~sdk~i~lge 336 (338)
T KOG0265|consen 298 RRILYKLPGHYGSVNEVDFHPTEP-IILSCSSDKTIYLGE 336 (338)
T ss_pred ccEEEEcCCcceeEEEeeecCCCc-EEEEeccCceeEeec
Confidence 234566789999999999999875 678999999998744
No 64
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.4e-28 Score=195.04 Aligned_cols=253 Identities=25% Similarity=0.393 Sum_probs=194.1
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCcee---------------eeeee-cCCCCCeeEEEEcCCCCEEEEe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYE---------------CVATL-EGHENEVKSVSWNASGTLLATC 65 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~---------------~~~~~-~~h~~~v~~v~~~~~~~~l~s~ 65 (281)
|+.+|.+++++|++++..+++.|++|.=|+..++... +...- ++|.+.+.+++.+|||++|++|
T Consensus 141 H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatg 220 (479)
T KOG0299|consen 141 HQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATG 220 (479)
T ss_pred ccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEec
Confidence 8899999999999999999999999999987654311 01111 3788999999999999999999
Q ss_pred cCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCcccc
Q 023500 66 GRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSST 145 (281)
Q Consensus 66 ~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~ 145 (281)
+.|+.|.+|+..+.+ .+.++.+|...|.+++|-...+.++++|.|++|++|.++... +.....+|+..
T Consensus 221 g~d~~v~Iw~~~t~e---hv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s---------~vetlyGHqd~ 288 (479)
T KOG0299|consen 221 GRDRHVQIWDCDTLE---HVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS---------YVETLYGHQDG 288 (479)
T ss_pred CCCceEEEecCcccc---hhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH---------HHHHHhCCccc
Confidence 999999999987554 467789999999999999888899999999999999776532 22334589999
Q ss_pred EEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEec
Q 023500 146 IWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVE 225 (281)
Q Consensus 146 v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~ 225 (281)
|..++-...++.+-.|+.|.++++|++.-. .++ +...+...+-|+++-.+..+++|+.||.+.+|..
T Consensus 289 v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-----------sql--ifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~ 355 (479)
T KOG0299|consen 289 VLGIDALSRERCVTVGGRDRTVRLWKIPEE-----------SQL--IFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSL 355 (479)
T ss_pred eeeechhcccceEEeccccceeEEEecccc-----------cee--eeeCCCCCeeeEEEecccceeeccCCceEEEeee
Confidence 999988777777777789999999987311 111 1113466788999999999999999999999976
Q ss_pred ccCCCc-CCccceeeee--eccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 226 SKDDLI-DGPSYKMLLK--KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 226 ~~~~~~-~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
.+..+. .....+-... ....+..+|++++..|. ..++|+|+.+|.||+|.+...
T Consensus 356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~-sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPG-SDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred cccCceeEeeccccccCCccccccccceeeeEeccc-CceEEecCCCCceEEEEecCC
Confidence 543221 1000000111 11233458999999995 569999999999999998643
No 65
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=4.9e-28 Score=179.41 Aligned_cols=252 Identities=26% Similarity=0.465 Sum_probs=185.1
Q ss_pred CCccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcC-CCCEEEEecCCCcEEEEEecCC
Q 023500 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 1 ~h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~ 79 (281)
+|...|..++|+-+|..||+|+.|+++.+|+....++..-....+|.+.|-.+.|+| ...++++++.|++|++||++.+
T Consensus 18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~ 97 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSG 97 (313)
T ss_pred hhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccC
Confidence 477889999999999999999999999999987665433445678999999999988 6789999999999999999877
Q ss_pred CeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCC------------c-------------eeeee
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDN------------W-------------HCVQT 134 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~------------~-------------~~~~~ 134 (281)
+. ...+....+ -.-+.|+|++.+++.++.|..|...|........ | -++.-
T Consensus 98 k~---~~~i~~~~e-ni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~I 173 (313)
T KOG1407|consen 98 KC---TARIETKGE-NINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEI 173 (313)
T ss_pred cE---EEEeeccCc-ceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEE
Confidence 53 333332233 3457899999999999999999888865421100 0 00000
Q ss_pred -------eeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC
Q 023500 135 -------ISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR 207 (281)
Q Consensus 135 -------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 207 (281)
......+|+..+.|+.|+|+|++|++|+.|..+.+||++-.-+ .+ .+ ..++-+|..++|+-
T Consensus 174 LsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC--------~R---~i-sRldwpVRTlSFS~ 241 (313)
T KOG1407|consen 174 LSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELIC--------ER---CI-SRLDWPVRTLSFSH 241 (313)
T ss_pred EeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhh--------he---ee-ccccCceEEEEecc
Confidence 0112358999999999999999999999999999999752111 11 11 23688999999998
Q ss_pred Cc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCC---------CeEEEEEc
Q 023500 208 EG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDD---------GMIKIWEL 277 (281)
Q Consensus 208 ~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~D---------g~v~iw~~ 277 (281)
+| ++++++.|-.+-+-.+..+ . .+. +-.++++...++|+|+. .+||-+.+| |.|+||.+
T Consensus 242 dg~~lASaSEDh~IDIA~vetG-----d---~~~--eI~~~~~t~tVAWHPk~-~LLAyA~ddk~~d~~reag~vKiFG~ 310 (313)
T KOG1407|consen 242 DGRMLASASEDHFIDIAEVETG-----D---RVW--EIPCEGPTFTVAWHPKR-PLLAYACDDKDGDSNREAGTVKIFGL 310 (313)
T ss_pred CcceeeccCccceEEeEecccC-----C---eEE--EeeccCCceeEEecCCC-ceeeEEecCCCCccccccceeEEecC
Confidence 76 6788888877766644332 1 221 12467889999999974 577755543 57888876
Q ss_pred cc
Q 023500 278 AN 279 (281)
Q Consensus 278 ~~ 279 (281)
.+
T Consensus 311 ~~ 312 (313)
T KOG1407|consen 311 SN 312 (313)
T ss_pred CC
Confidence 54
No 66
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=3.4e-28 Score=187.66 Aligned_cols=247 Identities=22% Similarity=0.338 Sum_probs=196.8
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|..+++++--.||.+++.|+.|+-||...+++ +..+.||-..|.|++.+|.-+.|+|||.|-++|+||++...
T Consensus 192 hi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkv--IR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~- 268 (460)
T KOG0285|consen 192 HIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKV--IRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA- 268 (460)
T ss_pred hhheeeeeeecccCceEEEecCCCeeEEEechhhhh--HHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc-
Confidence 567889999999999999999999999999987754 67888999999999999999999999999999999997553
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
.+.++.+|...|..|.+.|....+++||.|++|++||+..... ..++ ..|...|.+++.+|....++++
T Consensus 269 --~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt-----~~tl----t~hkksvral~lhP~e~~fASa 337 (460)
T KOG0285|consen 269 --SVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKT-----MITL----THHKKSVRALCLHPKENLFASA 337 (460)
T ss_pred --eEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCce-----eEee----ecccceeeEEecCCchhhhhcc
Confidence 4788999999999999999999999999999999998865431 2222 2588899999999999999999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLK 241 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 241 (281)
+.|. |+-|++.-+.+.. .+ ..|..-+.+++...++++++|+.++.+.+|+.+.+-..+..... ...
T Consensus 338 s~dn-ik~w~~p~g~f~~-----------nl-sgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~-vqp 403 (460)
T KOG0285|consen 338 SPDN-IKQWKLPEGEFLQ-----------NL-SGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTI-VQP 403 (460)
T ss_pred CCcc-ceeccCCccchhh-----------cc-ccccceeeeeeeccCceEEEcCCceEEEEEecCcCccccccccc-ccC
Confidence 9885 8999764332211 11 23677788899999999999999999999988754322111000 000
Q ss_pred eccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 242 KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 242 ~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
.....+..|.+.+|...+.+ |++|..|.+|++|+=
T Consensus 404 GSl~sEagI~as~fDktg~r-lit~eadKtIk~~ke 438 (460)
T KOG0285|consen 404 GSLESEAGIFASCFDKTGSR-LITGEADKTIKMYKE 438 (460)
T ss_pred CccccccceeEEeecccCce-EEeccCCcceEEEec
Confidence 11123456889999987776 569999999999973
No 67
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=6.1e-28 Score=183.75 Aligned_cols=259 Identities=18% Similarity=0.303 Sum_probs=184.6
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCC------------------------------------ceeeeeee--
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGG------------------------------------DYECVATL-- 43 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~------------------------------------~~~~~~~~-- 43 (281)
|.+.|++++|+.||+.|||++.|++|+||+...- ...++..+
T Consensus 85 H~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K 164 (420)
T KOG2096|consen 85 HKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVK 164 (420)
T ss_pred cCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeee
Confidence 7899999999999999999999999999985321 00011100
Q ss_pred -------------------cCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCC
Q 023500 44 -------------------EGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTM 104 (281)
Q Consensus 44 -------------------~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~ 104 (281)
+-|.-.+..+-....+.+|+|++.|..|.+|++. ++. +..+...+..-...+.+|+|
T Consensus 165 ~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~---L~~idtnq~~n~~aavSP~G 240 (420)
T KOG2096|consen 165 KTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQL---LQSIDTNQSSNYDAAVSPDG 240 (420)
T ss_pred cccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cce---eeeeccccccccceeeCCCC
Confidence 0133345555556677899999999999999997 543 34445555566778899999
Q ss_pred CeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCc
Q 023500 105 DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYA 184 (281)
Q Consensus 105 ~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~ 184 (281)
..+++++...-|++|.+--...+.++.+.+.. ..+||.+.|..++|+++.+.+++.+.||++++||++.++...++...
T Consensus 241 RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf-~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~ 319 (420)
T KOG2096|consen 241 RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVF-SLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKI 319 (420)
T ss_pred cEEEEecCCCCceEEEEEeccCcchhhhhhhh-eeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchH
Confidence 99999999999999987544444444443332 34699999999999999999999999999999999876543332211
Q ss_pred ccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEE
Q 023500 185 SWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLA 264 (281)
Q Consensus 185 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 264 (281)
++...............++.+|+|.+++.+...++++|....+. .+-..+..|+..|.+++|+++|+ +++
T Consensus 320 -Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~--------~~~~~e~~h~~~Is~is~~~~g~-~~a 389 (420)
T KOG2096|consen 320 -LKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGK--------DYPELEDIHSTTISSISYSSDGK-YIA 389 (420)
T ss_pred -hhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCc--------cchhHHHhhcCceeeEEecCCCc-EEe
Confidence 11110000011233347888999988888888889998554321 12223567999999999999987 477
Q ss_pred EeCCCCeEEEEE
Q 023500 265 SASDDGMIKIWE 276 (281)
Q Consensus 265 s~~~Dg~v~iw~ 276 (281)
||| |..+|+.-
T Consensus 390 tcG-dr~vrv~~ 400 (420)
T KOG2096|consen 390 TCG-DRYVRVIR 400 (420)
T ss_pred eec-ceeeeeec
Confidence 887 78888764
No 68
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=2.8e-28 Score=203.81 Aligned_cols=241 Identities=21% Similarity=0.339 Sum_probs=185.7
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe---
Q 023500 5 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE--- 81 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~--- 81 (281)
.+.+..|-|-++++++|...|.+.+||..... .+.+..+|++.|++++.+||+..+++||+|++|++||......
T Consensus 414 y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~--l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~g 491 (888)
T KOG0306|consen 414 YILASKFVPGDRYIVLGTKNGELQVFDLASAS--LVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPG 491 (888)
T ss_pred cEEEEEecCCCceEEEeccCCceEEEEeehhh--hhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCc
Confidence 34555666666666666666666666654432 2445678999999999999999999999999999999752211
Q ss_pred --eEE-----eEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC
Q 023500 82 --FEC-----VSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK 154 (281)
Q Consensus 82 --~~~-----~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 154 (281)
... .+++ .-...|-|++++|++.+++.+=-|++|++|.+++. .+.....||.-+|.|++.+||
T Consensus 492 t~~k~lsl~~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl---------KFflsLYGHkLPV~smDIS~D 561 (888)
T KOG0306|consen 492 TQKKVLSLKHTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL---------KFFLSLYGHKLPVLSMDISPD 561 (888)
T ss_pred ccceeeeeccceEE-eccccEEEEEEcCCCcEEEEEeccCeEEEEEecce---------eeeeeecccccceeEEeccCC
Confidence 000 0111 23567899999999999999999999999977653 233445699999999999999
Q ss_pred CCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCC
Q 023500 155 GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDG 233 (281)
Q Consensus 155 ~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~ 233 (281)
+.+++||+.|..|++|.++.+.+.. .. ..|+..|.++.|-|+. ++.+++.|+.++-|+-.+-
T Consensus 562 SklivTgSADKnVKiWGLdFGDCHK--------S~----fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kF----- 624 (888)
T KOG0306|consen 562 SKLIVTGSADKNVKIWGLDFGDCHK--------SF----FAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKF----- 624 (888)
T ss_pred cCeEEeccCCCceEEeccccchhhh--------hh----hcccCceeEEEEcccceeEEEecCcceEEeechhhh-----
Confidence 9999999999999999988765531 11 1378899999999864 6889999999999955331
Q ss_pred ccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 234 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 234 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
. .+....+|...|++++.+|+|. +++|+|.|..||+|+...
T Consensus 625 ---e-~iq~L~~H~~ev~cLav~~~G~-~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 625 ---E-EIQKLDGHHSEVWCLAVSPNGS-FVVSSSHDKSIRLWERTD 665 (888)
T ss_pred ---h-hheeeccchheeeeeEEcCCCC-eEEeccCCceeEeeeccC
Confidence 2 2344568889999999999886 577999999999998654
No 69
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=1.1e-26 Score=198.29 Aligned_cols=228 Identities=14% Similarity=0.271 Sum_probs=159.0
Q ss_pred eeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCC-CCEEEEecCCCcEEEEEecCCCe-----eEEeEeecCCccc
Q 023500 21 ASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPGNE-----FECVSVLQGHAQD 94 (281)
Q Consensus 21 g~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~~w~~~~~~~-----~~~~~~~~~~~~~ 94 (281)
|+.++.++||+.... .++..+.+|.+.|.+++|+|+ +.+|+|||.|++|++||+..... ..+...+.+|...
T Consensus 50 GG~~gvI~L~~~~r~--~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~ 127 (568)
T PTZ00420 50 GGLIGAIRLENQMRK--PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKK 127 (568)
T ss_pred CCceeEEEeeecCCC--ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCc
Confidence 566788999987554 357788999999999999996 78999999999999999975421 1234467889999
Q ss_pred eeEEEecCCCCe-EEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 023500 95 VKMVQWHPTMDV-LFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 95 v~~v~~~p~~~~-l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~ 173 (281)
|.+++|+|++.. +++++.|++|++||++... ....+ .|...|.+++|+|++.+|++++.|+.|++||.+
T Consensus 128 V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~-----~~~~i-----~~~~~V~SlswspdG~lLat~s~D~~IrIwD~R 197 (568)
T PTZ00420 128 ISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK-----RAFQI-----NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPR 197 (568)
T ss_pred EEEEEECCCCCeEEEEEeCCCeEEEEECCCCc-----EEEEE-----ecCCcEEEEEECCCCCEEEEEecCCEEEEEECC
Confidence 999999999875 5799999999999987642 12222 244679999999999999999999999999986
Q ss_pred ccccccCCCCcccceeEEeecccCcceE-----EEEeCCC-ceeeecCCCC----cEEEEecccCCCcCCccceeeeeec
Q 023500 174 ITRMQSGDGYASWRHLCTISGYHDRTIF-----SVHWSRE-GIIASGAADD----SVQFFVESKDDLIDGPSYKMLLKKE 243 (281)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~-----~~~~~~~-~~~~~~~~d~----~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (281)
.... ...+. .|...+. ...++++ +++++++.++ .+++|+.+... .... ....
T Consensus 198 sg~~-----------i~tl~-gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~----~pl~--~~~l 259 (568)
T PTZ00420 198 KQEI-----------ASSFH-IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT----SALV--TMSI 259 (568)
T ss_pred CCcE-----------EEEEe-cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC----CceE--EEEe
Confidence 4321 11222 2333222 2233344 5677766553 79999876321 1111 1112
Q ss_pred cCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 244 KAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 244 ~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
..+...+.- .|.++...++++|+.|+.||+|++..
T Consensus 260 d~~~~~L~p-~~D~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 260 DNASAPLIP-HYDESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred cCCccceEE-eeeCCCCCEEEEEECCCeEEEEEccC
Confidence 223333322 34444445788999999999999853
No 70
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=2.1e-27 Score=196.90 Aligned_cols=235 Identities=24% Similarity=0.399 Sum_probs=190.7
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeE-EEEcC-CCCEEEEecCCCcEEEEEecCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKS-VSWNA-SGTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~-v~~~~-~~~~l~s~~~d~~v~~w~~~~~ 79 (281)
|+..|..+++.+ +..++++|-|+++++|+...+.+...+.+.+|.+-|.+ +++-+ ++-+|++|+.|.++.+|.....
T Consensus 13 H~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~ 91 (745)
T KOG0301|consen 13 HKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQA 91 (745)
T ss_pred CccchheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCC
Confidence 778888888764 44677999999999999877777666778888888877 88876 4557999999999999998655
Q ss_pred CeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEE
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV 159 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 159 (281)
. +..++.+|...|+|+....++. ++|||+|.++++|...+.. ....+|++.|+++..-|++ .++
T Consensus 92 ~---P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~-----------~~l~gH~asVWAv~~l~e~-~~v 155 (745)
T KOG0301|consen 92 E---PLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELV-----------YSLQGHTASVWAVASLPEN-TYV 155 (745)
T ss_pred C---chhhhhccccceeeeecCCcCc-eEecccccceEEecchhhh-----------cccCCcchheeeeeecCCC-cEE
Confidence 4 5678999999999998777766 9999999999999654422 1235899999999999998 788
Q ss_pred EeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceee
Q 023500 160 SCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKML 239 (281)
Q Consensus 160 s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 239 (281)
||+.|.+|++|.-+ +.+.++++ |+..|+.++.-+++.+++++.||.+++|+...+ .
T Consensus 156 TgsaDKtIklWk~~-------------~~l~tf~g-HtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge----------~ 211 (745)
T KOG0301|consen 156 TGSADKTIKLWKGG-------------TLLKTFSG-HTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGE----------V 211 (745)
T ss_pred eccCcceeeeccCC-------------chhhhhcc-chhheeeeEEecCCCeEeecCCceEEEEeccCc----------e
Confidence 99999999999543 22234443 899999999999999999999999999977432 3
Q ss_pred eeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 240 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 240 ~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
+.+..+|+.-|.+++..+.+ .+++|+|+|+++|||+..
T Consensus 212 l~~~~ghtn~vYsis~~~~~-~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 212 LLEMHGHTNFVYSISMALSD-GLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred eeeeeccceEEEEEEecCCC-CeEEEecCCceEEEeecC
Confidence 45567899999999955544 478899999999999853
No 71
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.6e-28 Score=203.03 Aligned_cols=238 Identities=19% Similarity=0.369 Sum_probs=183.7
Q ss_pred eeEEEEcC-CCCEEEEeeCCCcEEEEecCCC-ceeeeeeecCCCCCeeEEEEcC-CCCEEEEecCCCcEEEEEecCCCee
Q 023500 6 VRSCAWSP-SGKLLATASFDATTCIWEDVGG-DYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEF 82 (281)
Q Consensus 6 i~~~~~~~-~~~~l~tg~~d~~i~lw~~~~~-~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~~~~ 82 (281)
+..+.|.. +.++|||++..|.|.+||+... ..+.+..+.+|...++++.|++ ...+|+|||+|++|++||++....
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S- 168 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS- 168 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc-
Confidence 44566775 5679999999999999998651 2234668899999999999998 577899999999999999986653
Q ss_pred EEeEeecCCccceeEEEecCC-CCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 83 ECVSVLQGHAQDVKMVQWHPT-MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~~p~-~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
..++.+..+.|+.|+|+|. ++.++++.+.|.+++||+...+ ++. ....+|.++|.|+.|+|++.+||||
T Consensus 169 --~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~----r~~----~k~~AH~GpV~c~nwhPnr~~lATG 238 (839)
T KOG0269|consen 169 --KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD----RCE----KKLTAHNGPVLCLNWHPNREWLATG 238 (839)
T ss_pred --cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCch----hHH----HHhhcccCceEEEeecCCCceeeec
Confidence 4556678889999999996 5578888888999999998753 222 3345899999999999999999999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc--eeeecC--CCCcEEEEecccCCCcCCccce
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGA--ADDSVQFFVESKDDLIDGPSYK 237 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~--~d~~~~~~~~~~~~~~~~~~~~ 237 (281)
++|++++||+...... ....++ ....++..+.|-|+. .+++++ .|-.+++|+++.--+
T Consensus 239 GRDK~vkiWd~t~~~~---------~~~~tI--nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYI------- 300 (839)
T KOG0269|consen 239 GRDKMVKIWDMTDSRA---------KPKHTI--NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYI------- 300 (839)
T ss_pred CCCccEEEEeccCCCc---------cceeEE--eecceeeeeeeccCccchhhhhhccccceEEEEeeccccc-------
Confidence 9999999998863221 111222 135788899998864 566655 577999998764211
Q ss_pred eeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEE
Q 023500 238 MLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIK 273 (281)
Q Consensus 238 ~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~ 273 (281)
-......|...++.++|....+..+.+++.||+|.
T Consensus 301 -P~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 301 -PYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred -cceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 12234578888999999886677788999999864
No 72
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=1.2e-25 Score=192.03 Aligned_cols=226 Identities=18% Similarity=0.316 Sum_probs=158.5
Q ss_pred CccceeEEEEcCC-CCEEEEeeCCCcEEEEecCCCce------eeeeeecCCCCCeeEEEEcCCCCE-EEEecCCCcEEE
Q 023500 2 HTRTVRSCAWSPS-GKLLATASFDATTCIWEDVGGDY------ECVATLEGHENEVKSVSWNASGTL-LATCGRDKSVWI 73 (281)
Q Consensus 2 h~~~i~~~~~~~~-~~~l~tg~~d~~i~lw~~~~~~~------~~~~~~~~h~~~v~~v~~~~~~~~-l~s~~~d~~v~~ 73 (281)
|.+.|++++|+|+ +.+||+|+.|+.|+|||...+.. .++..+.+|...|.+++|+|++.. |+++|.|++|++
T Consensus 73 H~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrI 152 (568)
T PTZ00420 73 HTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNI 152 (568)
T ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEE
Confidence 7889999999996 78999999999999999754321 234567899999999999998875 579999999999
Q ss_pred EEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccE-----EE
Q 023500 74 WEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTI-----WA 148 (281)
Q Consensus 74 w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v-----~~ 148 (281)
||+..+.. ...+. |...|.+++|+|++.++++++.|++|++||+.... .+..+ .+|.+.+ +.
T Consensus 153 WDl~tg~~---~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~-----~i~tl----~gH~g~~~s~~v~~ 219 (568)
T PTZ00420 153 WDIENEKR---AFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE-----IASSF----HIHDGGKNTKNIWI 219 (568)
T ss_pred EECCCCcE---EEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCc-----EEEEE----ecccCCceeEEEEe
Confidence 99976643 23333 45679999999999999999999999999887542 22222 3565433 34
Q ss_pred EEEccCCCEEEEeeCCC----cEEEEeCCccccccCCCCcccceeEEeec-ccCcceEEEEeCCCc-eeeecCCCCcEEE
Q 023500 149 LSFNAKGDKLVSCSDDL----TIKIWGADITRMQSGDGYASWRHLCTISG-YHDRTIFSVHWSREG-IIASGAADDSVQF 222 (281)
Q Consensus 149 ~~~~~~~~~l~s~~~d~----~i~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~~~~~~d~~~~~ 222 (281)
..|++++.+|++++.|+ .|++||++... .++..... .....+...-..+.+ ++++|..|+.+++
T Consensus 220 ~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~----------~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~ 289 (568)
T PTZ00420 220 DGLGGDDNYILSTGFSKNNMREMKLWDLKNTT----------SALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRY 289 (568)
T ss_pred eeEcCCCCEEEEEEcCCCCccEEEEEECCCCC----------CceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEE
Confidence 45668888999988764 79999986311 11111110 011122111112334 5778889999999
Q ss_pred EecccCCCcCCccceeeeeeccCCCCCeeEEEEcCC
Q 023500 223 FVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPG 258 (281)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 258 (281)
|....+. ...+. ...+..++..++|.|+
T Consensus 290 ~e~~~~~-------~~~l~-~~~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 290 YQHSLGS-------IRKVN-EYKSCSPFRSFGFLPK 317 (568)
T ss_pred EEccCCc-------EEeec-ccccCCCccceEEccc
Confidence 9775421 11122 2236678889999996
No 73
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=3.8e-26 Score=194.38 Aligned_cols=236 Identities=29% Similarity=0.564 Sum_probs=184.7
Q ss_pred CCccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC
Q 023500 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 1 ~h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
.|.+.|+++++..-+.++++|+.|.++++||..++ .|...+.+|.+.|.++... +..+++||.|.+|++|++.++
T Consensus 247 GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg--~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~- 321 (537)
T KOG0274|consen 247 GHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG--ECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNG- 321 (537)
T ss_pred CCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC--cEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCc-
Confidence 48999999999987889999999999999998777 5788999999999998764 467888999999999999755
Q ss_pred eeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
.++..+.+|...|+++..+ +.++++|+.|++|++|++.. .+++..+ .+|...|.++.+.+. ..+++
T Consensus 322 --~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~-----~~cl~sl----~gH~~~V~sl~~~~~-~~~~S 387 (537)
T KOG0274|consen 322 --ACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRT-----GKCLKSL----SGHTGRVYSLIVDSE-NRLLS 387 (537)
T ss_pred --ceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhh-----ceeeeee----cCCcceEEEEEecCc-ceEEe
Confidence 3677888899999999998 78999999999999998873 2455555 489999999988765 78999
Q ss_pred eeCCCcEEEEeCCcc-ccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceee
Q 023500 161 CSDDLTIKIWGADIT-RMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKML 239 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 239 (281)
|+.|++|++||+... ++. ..+. .|...+..+. ..+..+++++.|+.+++|+......
T Consensus 388 gs~D~~IkvWdl~~~~~c~-----------~tl~-~h~~~v~~l~-~~~~~Lvs~~aD~~Ik~WD~~~~~~--------- 445 (537)
T KOG0274|consen 388 GSLDTTIKVWDLRTKRKCI-----------HTLQ-GHTSLVSSLL-LRDNFLVSSSADGTIKLWDAEEGEC--------- 445 (537)
T ss_pred eeeccceEeecCCchhhhh-----------hhhc-CCcccccccc-cccceeEeccccccEEEeecccCce---------
Confidence 999999999998755 221 1111 1333333222 2356789999999999997755322
Q ss_pred eeeccC-CCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 240 LKKEKA-HDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 240 ~~~~~~-h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
.....+ |...|.++++. ...+++++.|+.+++||+++.
T Consensus 446 ~~~~~~~~~~~v~~l~~~---~~~il~s~~~~~~~l~dl~~~ 484 (537)
T KOG0274|consen 446 LRTLEGRHVGGVSALALG---KEEILCSSDDGSVKLWDLRSG 484 (537)
T ss_pred eeeeccCCcccEEEeecC---cceEEEEecCCeeEEEecccC
Confidence 222223 56778888776 235779999999999998764
No 74
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.2e-26 Score=184.27 Aligned_cols=252 Identities=22% Similarity=0.244 Sum_probs=187.3
Q ss_pred CCccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC
Q 023500 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 1 ~h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
.|.+.|.+++.++||+|||+|+.|..+.||+..+. ++++.+.+|.+.|.+++|......|+++|.|++|++|++...
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~--ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~- 276 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTL--EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL- 276 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCccc--chhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh-
Confidence 48889999999999999999999999999998766 467889999999999999988889999999999999998543
Q ss_pred eeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
..+.++.+|++.|..+....-...+-.|+.|+++++|++.+.. + ....+|...+-|++|-.+ ++|++
T Consensus 277 --s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees-------q---lifrg~~~sidcv~~In~-~Hfvs 343 (479)
T KOG0299|consen 277 --SYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES-------Q---LIFRGGEGSIDCVAFIND-EHFVS 343 (479)
T ss_pred --HHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccc-------e---eeeeCCCCCeeeEEEecc-cceee
Confidence 3466788999999999888777788888899999999885431 1 122467778999999755 58999
Q ss_pred eeCCCcEEEEeCCccccccCCCCccc-ceeEEeecccCcceEEEEeCC-CceeeecCCCCcEEEEecccCCCcCCcccee
Q 023500 161 CSDDLTIKIWGADITRMQSGDGYASW-RHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLIDGPSYKM 238 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 238 (281)
|+.+|.|.+|++...++......+.- .+.. -...+...|.++...+ ..++++|+.+|.+++|.+..+-..- .
T Consensus 344 GSdnG~IaLWs~~KKkplf~~~~AHgv~~~~-~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i-----~ 417 (479)
T KOG0299|consen 344 GSDNGSIALWSLLKKKPLFTSRLAHGVIPEL-DPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAI-----N 417 (479)
T ss_pred ccCCceEEEeeecccCceeEeeccccccCCc-cccccccceeeeEecccCceEEecCCCCceEEEEecCCcccc-----c
Confidence 99999999999865544332211110 0000 0001123677777665 4688999999999999876532111 1
Q ss_pred eeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEE
Q 023500 239 LLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIW 275 (281)
Q Consensus 239 ~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw 275 (281)
.+... .-.+.|+++.|+++|+++++..+..-.+==|
T Consensus 418 ~l~~l-s~~GfVNsl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 418 LLYSL-SLVGFVNSLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred eeeec-ccccEEEEEEEccCCCEEEEeccccccccee
Confidence 12222 2456799999999998888776665444333
No 75
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5.1e-26 Score=181.80 Aligned_cols=235 Identities=20% Similarity=0.347 Sum_probs=184.3
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCC-CCEEEEecCCCcEEEEEecCCCe
Q 023500 3 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
++.|..+.|-.||++||.|+..|.++|||..+. ..+..+.+|+.+|..+.|+|. +..+++|++|+.+++||+....
T Consensus 68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r--~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~- 144 (487)
T KOG0310|consen 68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR--VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY- 144 (487)
T ss_pred ccceeEEEeecCCeEEEccCCcCcEEEeccccH--HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE-
Confidence 467889999999999999999999999994332 346778899999999999995 5678899999999999996443
Q ss_pred eEEeEeecCCccceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEE
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
. ...+.+|.+.|+|.+|+|... .++|||.||+|++||...... .+.++ .|..+|-.+.+-|.|..+++
T Consensus 145 -v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~----~v~el-----nhg~pVe~vl~lpsgs~ias 213 (487)
T KOG0310|consen 145 -V-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS----RVVEL-----NHGCPVESVLALPSGSLIAS 213 (487)
T ss_pred -E-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc----eeEEe-----cCCCceeeEEEcCCCCEEEE
Confidence 2 567899999999999999755 789999999999998876531 23333 47788999999999999999
Q ss_pred eeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC-ceeeecCCCCcEEEEecccCCCcCCccceee
Q 023500 161 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE-GIIASGAADDSVQFFVESKDDLIDGPSYKML 239 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 239 (281)
++.. .+++||+..+... ++.+ ..|..+|+|+.+..+ ..+++++-|+.+++|+.... +.
T Consensus 214 AgGn-~vkVWDl~~G~ql----------l~~~-~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~--------Kv- 272 (487)
T KOG0310|consen 214 AGGN-SVKVWDLTTGGQL----------LTSM-FNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY--------KV- 272 (487)
T ss_pred cCCC-eEEEEEecCCcee----------hhhh-hcccceEEEEEeecCCceEeecccccceEEEEccce--------EE-
Confidence 8855 5999998644321 1222 238899999998765 47999999999999975321 11
Q ss_pred eeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEE
Q 023500 240 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKI 274 (281)
Q Consensus 240 ~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~i 274 (281)
. ......++|.+++.+|+++. ++.|-.||.+.+
T Consensus 273 v-~s~~~~~pvLsiavs~dd~t-~viGmsnGlv~~ 305 (487)
T KOG0310|consen 273 V-HSWKYPGPVLSIAVSPDDQT-VVIGMSNGLVSI 305 (487)
T ss_pred E-EeeecccceeeEEecCCCce-EEEecccceeee
Confidence 1 12235689999999998765 567888998755
No 76
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.9e-26 Score=175.76 Aligned_cols=245 Identities=25% Similarity=0.397 Sum_probs=197.4
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEE------
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWE------ 75 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~------ 75 (281)
|.+.|+.++-.....++.+++.|.+.+||..+.+ .|+..+.||.+.|++++|+|.+.+++++|.|++..+|.
T Consensus 147 HkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg--~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~ 224 (481)
T KOG0300|consen 147 HKDGIWHVAADSTQPICGTASADHTARIWSLESG--ACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWE 224 (481)
T ss_pred cccceeeehhhcCCcceeecccccceeEEeeccc--cceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCc
Confidence 8899999999988899999999999999998877 47889999999999999999999999999999999996
Q ss_pred ecCC---------C----------------------eeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCC
Q 023500 76 VMPG---------N----------------------EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDT 124 (281)
Q Consensus 76 ~~~~---------~----------------------~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~ 124 (281)
+... + ...++..+.+|...|.+..|-..++.++++|+|.+..+||++..
T Consensus 225 vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg 304 (481)
T KOG0300|consen 225 VPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETG 304 (481)
T ss_pred CCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccC
Confidence 2110 0 00134567899999999999999999999999999999999876
Q ss_pred CCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEE
Q 023500 125 DSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVH 204 (281)
Q Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 204 (281)
. +.....||....+.++-+|..+++++.+.|-+.++||... . .+.......|...|++..
T Consensus 305 e---------~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe-a----------I~sV~VFQGHtdtVTS~v 364 (481)
T KOG0300|consen 305 E---------VVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE-A----------IQSVAVFQGHTDTVTSVV 364 (481)
T ss_pred c---------eeccccCcchhccccccCCcceEEEEeccCceeEeccchh-h----------cceeeeecccccceeEEE
Confidence 4 2234468999899999999999999999999999998751 1 112222235889999999
Q ss_pred eCCCceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 205 WSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 205 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
|..+..+++|+.|.++++|+.+. +.. +.-.+ --.++++.++.+..+ .+++.--++..||+||+.
T Consensus 365 F~~dd~vVSgSDDrTvKvWdLrN--MRs--plATI-----RtdS~~NRvavs~g~-~iIAiPhDNRqvRlfDln 428 (481)
T KOG0300|consen 365 FNTDDRVVSGSDDRTVKVWDLRN--MRS--PLATI-----RTDSPANRVAVSKGH-PIIAIPHDNRQVRLFDLN 428 (481)
T ss_pred EecCCceeecCCCceEEEeeecc--ccC--cceee-----ecCCccceeEeecCC-ceEEeccCCceEEEEecC
Confidence 99999999999999999997752 221 11111 124678889998754 577777778889999986
No 77
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=8.4e-25 Score=166.41 Aligned_cols=247 Identities=18% Similarity=0.289 Sum_probs=175.7
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecC--CCcEEEEEecCCC
Q 023500 3 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR--DKSVWIWEVMPGN 80 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~--d~~v~~w~~~~~~ 80 (281)
...|+++.|+++|.++++++.|.+++|||...+++ +.++..++-.+..+.|......++-++. |.+||.-++...+
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~--~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNk 91 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ--VKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNK 91 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce--eeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCc
Confidence 46799999999999999999999999999887754 5666767778888999766665555554 8999999986553
Q ss_pred eeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
.++.+.||...|++++.+|-++.++|+|.|++|++||+.... |...+.. ..-...+|+|+|-++|+
T Consensus 92 ---ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~-----cqg~l~~------~~~pi~AfDp~GLifA~ 157 (311)
T KOG1446|consen 92 ---YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKK-----CQGLLNL------SGRPIAAFDPEGLIFAL 157 (311)
T ss_pred ---eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCC-----CceEEec------CCCcceeECCCCcEEEE
Confidence 588999999999999999999999999999999999887432 2222221 11235799999999999
Q ss_pred eeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceee-ecCCCCcEEEEecccCCCcCCccceee
Q 023500 161 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIA-SGAADDSVQFFVESKDDLIDGPSYKML 239 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~ 239 (281)
+.....|++||++...-. ... ...+..........++|+++|..+ .+..++.+.+.+.-. +.. ...
T Consensus 158 ~~~~~~IkLyD~Rs~dkg---PF~----tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~-----G~~-~~t 224 (311)
T KOG1446|consen 158 ANGSELIKLYDLRSFDKG---PFT----TFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFD-----GTV-KST 224 (311)
T ss_pred ecCCCeEEEEEecccCCC---Cce----eEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccC-----CcE-eee
Confidence 988889999998743110 000 011111234566789999998544 444555566664332 221 111
Q ss_pred eeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 240 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 240 ~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
+.....-..--....|.|+++ ++++|++||+|.+|++.+
T Consensus 225 fs~~~~~~~~~~~a~ftPds~-Fvl~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 225 FSGYPNAGNLPLSATFTPDSK-FVLSGSDDGTIHVWNLET 263 (311)
T ss_pred EeeccCCCCcceeEEECCCCc-EEEEecCCCcEEEEEcCC
Confidence 221111111225788999986 577999999999999864
No 78
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=5.6e-26 Score=172.16 Aligned_cols=247 Identities=18% Similarity=0.302 Sum_probs=173.6
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCee
Q 023500 3 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF 82 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~ 82 (281)
.+.|..+.|+|.+..|+.+++||.+++||....+. ...++ |..++.+++|.+ ...+++|+.||.|+.+|+..+++
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l--~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~- 87 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL--KLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE- 87 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhh--hhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcc-
Confidence 46799999999999888899999999999876532 33333 889999999976 56799999999999999987653
Q ss_pred EEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee
Q 023500 83 ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS 162 (281)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 162 (281)
..+..|...++|+.+.|-...+++||+|++|++||..... ....+. ....|.+++.+ +..|+.|+
T Consensus 88 ---~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~-----~~~~~d-----~~kkVy~~~v~--g~~LvVg~ 152 (323)
T KOG1036|consen 88 ---DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV-----VVGTFD-----QGKKVYCMDVS--GNRLVVGT 152 (323)
T ss_pred ---eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc-----cccccc-----cCceEEEEecc--CCEEEEee
Confidence 3467899999999999999999999999999999876421 112221 23478888765 45799999
Q ss_pred CCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCc--cceee
Q 023500 163 DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGP--SYKML 239 (281)
Q Consensus 163 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~--~~~~~ 239 (281)
.|..+.+||++.-....... .......++++++-|++ -+++++-||++.+=........+.+ .++..
T Consensus 153 ~~r~v~iyDLRn~~~~~q~r----------eS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCH 222 (323)
T KOG1036|consen 153 SDRKVLIYDLRNLDEPFQRR----------ESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCH 222 (323)
T ss_pred cCceEEEEEcccccchhhhc----------cccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEee
Confidence 99999999986432211100 01123456677666632 3555677887766444322111111 11111
Q ss_pred eeec--cCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 240 LKKE--KAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 240 ~~~~--~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
.... ..--.||++++|+|-- ..|+||+.||.|.+||+.+.
T Consensus 223 r~~~~~~~~~yPVNai~Fhp~~-~tfaTgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 223 RLSEKDTEIIYPVNAIAFHPIH-GTFATGGSDGIVNIWDLFNR 264 (323)
T ss_pred ecccCCceEEEEeceeEecccc-ceEEecCCCceEEEccCcch
Confidence 1111 1123479999999974 46899999999999998764
No 79
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=1.1e-25 Score=177.71 Aligned_cols=245 Identities=21% Similarity=0.336 Sum_probs=186.8
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|+..|+.+.|+|+...+++++.|..|++|...... +......|.++|+.+..+|.|.+|++++.|++.-+-|++.+..
T Consensus 260 h~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s--~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~ 337 (506)
T KOG0289|consen 260 HTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS--EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQ 337 (506)
T ss_pred cceEEEEEEeccchhheeecCCcceEEeecccccc--CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcE
Confidence 77889999999999999999999999999865443 4566788999999999999999999999999988888887764
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
.-.... .+..-.++++.||||+.++.+|+.|+.+++||+.+... +.. ..+|.++|.++.|+-+|.+|+++
T Consensus 338 lt~vs~-~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~-----~a~----Fpght~~vk~i~FsENGY~Lat~ 407 (506)
T KOG0289|consen 338 LTVVSD-ETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTN-----VAK----FPGHTGPVKAISFSENGYWLATA 407 (506)
T ss_pred EEEEee-ccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccc-----ccc----CCCCCCceeEEEeccCceEEEEE
Confidence 322211 12334589999999999999999999999999876542 112 24799999999999999999999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce-eeecCCCCcEEEEecccCCCcCCccceeee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLL 240 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 240 (281)
+.|+.|++||++..+ ++ .++..-....+.+++|++.|. +++++.+ +++|...+. ......+
T Consensus 408 add~~V~lwDLRKl~-----n~------kt~~l~~~~~v~s~~fD~SGt~L~~~g~~--l~Vy~~~k~-----~k~W~~~ 469 (506)
T KOG0289|consen 408 ADDGSVKLWDLRKLK-----NF------KTIQLDEKKEVNSLSFDQSGTYLGIAGSD--LQVYICKKK-----TKSWTEI 469 (506)
T ss_pred ecCCeEEEEEehhhc-----cc------ceeeccccccceeEEEcCCCCeEEeecce--eEEEEEecc-----cccceee
Confidence 999999999986321 11 111111234688899998875 4445444 555544321 1113445
Q ss_pred eeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 241 ~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
.....|.+..+.+.|.... ++++++|-|..++++.+
T Consensus 470 ~~~~~~sg~st~v~Fg~~a-q~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 470 KELADHSGLSTGVRFGEHA-QYLASTSMDAILRLYAL 505 (506)
T ss_pred ehhhhcccccceeeecccc-eEEeeccchhheEEeec
Confidence 5666788889999998765 47889999999999865
No 80
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=6e-26 Score=193.19 Aligned_cols=236 Identities=27% Similarity=0.478 Sum_probs=189.1
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...+.+..|+ +.++++++.|+.|.+|+..++.. +...+.||.+.|+++++...+..|++|+.|+++++||...+
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~-i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg-- 281 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYL-ILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG-- 281 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceE-EEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC--
Confidence 45667777777 66788999999999999877653 34458999999999999888899999999999999997655
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
+|..++.+|...+.++...+. .+++||.|.+|++|+++... ++..+ .+|.++|.++..+ +.++++|
T Consensus 282 -~C~~~l~gh~stv~~~~~~~~--~~~sgs~D~tVkVW~v~n~~-----~l~l~----~~h~~~V~~v~~~--~~~lvsg 347 (537)
T KOG0274|consen 282 -ECTHSLQGHTSSVRCLTIDPF--LLVSGSRDNTVKVWDVTNGA-----CLNLL----RGHTGPVNCVQLD--EPLLVSG 347 (537)
T ss_pred -cEEEEecCCCceEEEEEccCc--eEeeccCCceEEEEeccCcc-----eEEEe----ccccccEEEEEec--CCEEEEE
Confidence 588999999999999877664 77889999999999988542 33333 3599999999987 6799999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLK 241 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 241 (281)
+.|++|++||....+ .+..+.+ |...|.++.+..+..+++|+.|+++++|+....- .+..
T Consensus 348 s~d~~v~VW~~~~~~-----------cl~sl~g-H~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~--------~c~~ 407 (537)
T KOG0274|consen 348 SYDGTVKVWDPRTGK-----------CLKSLSG-HTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKR--------KCIH 407 (537)
T ss_pred ecCceEEEEEhhhce-----------eeeeecC-CcceEEEEEecCcceEEeeeeccceEeecCCchh--------hhhh
Confidence 999999999986432 2334444 8899999988877899999999999999775320 2344
Q ss_pred eccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 242 KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 242 ~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
...+|.+-+..+.+. + .++++++.|+.|++||...
T Consensus 408 tl~~h~~~v~~l~~~--~-~~Lvs~~aD~~Ik~WD~~~ 442 (537)
T KOG0274|consen 408 TLQGHTSLVSSLLLR--D-NFLVSSSADGTIKLWDAEE 442 (537)
T ss_pred hhcCCcccccccccc--c-ceeEeccccccEEEeeccc
Confidence 456788878777665 2 3578999999999999753
No 81
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2e-26 Score=184.08 Aligned_cols=239 Identities=21% Similarity=0.316 Sum_probs=184.2
Q ss_pred cceeEEEEcCCCCE-EEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCee
Q 023500 4 RTVRSCAWSPSGKL-LATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF 82 (281)
Q Consensus 4 ~~i~~~~~~~~~~~-l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~ 82 (281)
..|..++|+|.-.+ +|+.+ .--+.||+..+.. ..+++.-....|.++.|..||++|++|+..|.|+++|+.+ +
T Consensus 27 ~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~--~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r-- 100 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRS--VRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-R-- 100 (487)
T ss_pred CcceeEecCCCCCCceEEec-ccEEEEEecchhh--hhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-H--
Confidence 57999999997653 44433 2458899865543 3456667889999999999999999999999999999543 1
Q ss_pred EEeEeecCCccceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCC-EEEE
Q 023500 83 ECVSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD-KLVS 160 (281)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s 160 (281)
..++.+.+|+.++..+.|+|.++ .+++|+.|+.+++|++.... + +....+|+..|.|.+|+|... .++|
T Consensus 101 ~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~------v---~~~l~~htDYVR~g~~~~~~~hivvt 171 (487)
T KOG0310|consen 101 VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY------V---QAELSGHTDYVRCGDISPANDHIVVT 171 (487)
T ss_pred HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE------E---EEEecCCcceeEeeccccCCCeEEEe
Confidence 23567889999999999999876 57788888899999887642 1 222358999999999999755 8999
Q ss_pred eeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeee
Q 023500 161 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLL 240 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 240 (281)
|+-||+|++||++... .....+ .|+.+|-++.+-|.|.+++.+..+.+++|+...+. +..
T Consensus 172 GsYDg~vrl~DtR~~~----------~~v~el--nhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~--------qll 231 (487)
T KOG0310|consen 172 GSYDGKVRLWDTRSLT----------SRVVEL--NHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGG--------QLL 231 (487)
T ss_pred cCCCceEEEEEeccCC----------ceeEEe--cCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCc--------eeh
Confidence 9999999999987432 112222 37889999999998766666666789999876432 233
Q ss_pred eeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 241 ~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
.....|...|+|+.+..++.+ |+|+|.|+.|++|++.
T Consensus 232 ~~~~~H~KtVTcL~l~s~~~r-LlS~sLD~~VKVfd~t 268 (487)
T KOG0310|consen 232 TSMFNHNKTVTCLRLASDSTR-LLSGSLDRHVKVFDTT 268 (487)
T ss_pred hhhhcccceEEEEEeecCCce-EeecccccceEEEEcc
Confidence 333448889999999998876 5699999999999954
No 82
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=9.7e-27 Score=196.95 Aligned_cols=211 Identities=21% Similarity=0.446 Sum_probs=156.3
Q ss_pred eec-CCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCC----------------------------Ce-e---------
Q 023500 42 TLE-GHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG----------------------------NE-F--------- 82 (281)
Q Consensus 42 ~~~-~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~----------------------------~~-~--------- 82 (281)
.+. +|.+.|+++.|++||++||+||.|+-|+||.+... .. .
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 344 89999999999999999999999999999997650 00 0
Q ss_pred -------------------EEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCcc
Q 023500 83 -------------------ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHS 143 (281)
Q Consensus 83 -------------------~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~ 143 (281)
.+...+.+|.+.|-.+.|+-+ ++|+++|.|.+||+|++... .|+..+ .|.
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~-----~CL~~F-----~Hn 409 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRK-----ECLKVF-----SHN 409 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCc-----ceeeEE-----ecC
Confidence 012236799999999999875 68999999999999987754 366555 489
Q ss_pred ccEEEEEEcc-CCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce-eeecCCCCcEE
Q 023500 144 STIWALSFNA-KGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQ 221 (281)
Q Consensus 144 ~~v~~~~~~~-~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~~~ 221 (281)
.-|+|++|+| |.++|++|+-|+.+|||++.-.+. .-... ...-|+++++.|+|. .+.|+.+|.++
T Consensus 410 dfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~V------------v~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~ 476 (712)
T KOG0283|consen 410 DFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKV------------VDWND-LRDLITAVCYSPDGKGAVIGTFNGYCR 476 (712)
T ss_pred CeeEEEEecccCCCcEeecccccceEEeecCcCee------------Eeehh-hhhhheeEEeccCCceEEEEEeccEEE
Confidence 9999999999 667999999999999998742211 11111 236688999999885 66777899999
Q ss_pred EEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 222 FFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
+|......+...............|. .|+.+.|.|....-++..+.|..|||+|.
T Consensus 477 fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~ 531 (712)
T KOG0283|consen 477 FYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDG 531 (712)
T ss_pred EEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEec
Confidence 99775433222111111112223444 89999999976543456677999999998
No 83
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=1.7e-26 Score=200.27 Aligned_cols=213 Identities=30% Similarity=0.535 Sum_probs=170.0
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCC----------------CceeeeeeecCCCCCeeEEEEcCCCCEEEEe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVG----------------GDYECVATLEGHENEVKSVSWNASGTLLATC 65 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~----------------~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~ 65 (281)
|...|+|+.|+|||++||+|+.|+.|.||+... ..+.++..+.+|+..|..+.|+|++.+|+++
T Consensus 68 h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~ 147 (942)
T KOG0973|consen 68 HDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSV 147 (942)
T ss_pred ccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEe
Confidence 789999999999999999999999999998662 1344677889999999999999999999999
Q ss_pred cCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCC-----CCCc-----------
Q 023500 66 GRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTD-----SDNW----------- 129 (281)
Q Consensus 66 ~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~-----~~~~----------- 129 (281)
|.|++|.+|+.... +.++++.+|...|..+.|.|-|+++++-+.|++|++|+..+-. ..++
T Consensus 148 s~DnsViiwn~~tF---~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~R 224 (942)
T KOG0973|consen 148 SLDNSVIIWNAKTF---ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLR 224 (942)
T ss_pred cccceEEEEccccc---eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeee
Confidence 99999999997655 5788999999999999999999999999999999999854310 0000
Q ss_pred --------------------eeeeeee-------eccCCccccEEEEEEccC-----CC------------EEEEeeCCC
Q 023500 130 --------------------HCVQTIS-------ESNNGHSSTIWALSFNAK-----GD------------KLVSCSDDL 165 (281)
Q Consensus 130 --------------------~~~~~~~-------~~~~~h~~~v~~~~~~~~-----~~------------~l~s~~~d~ 165 (281)
.++.-++ ....||.+++.+++|+|. .. .+|+|+.|+
T Consensus 225 lSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDr 304 (942)
T KOG0973|consen 225 LSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDR 304 (942)
T ss_pred cccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCc
Confidence 0000000 112489999999999982 12 688899999
Q ss_pred cEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce-eeecCCCCcEEEEecccC
Q 023500 166 TIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKD 228 (281)
Q Consensus 166 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~~~~~~~~~~ 228 (281)
+|.+|.+... +++.........+|..++|+|+|+ +++++.||++.++.....
T Consensus 305 SlSVW~T~~~-----------RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 305 SLSVWNTALP-----------RPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred cEEEEecCCC-----------CchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 9999987533 333333344578899999999986 788999999999976543
No 84
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=1.2e-25 Score=188.26 Aligned_cols=246 Identities=22% Similarity=0.319 Sum_probs=192.2
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|+.++++.+...+++|+ .++++||+..+. .|+.++. .+.+.+..|-|.++++++|...|.+.++|+.+...
T Consensus 372 HR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~--kciRTi~--~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l 446 (888)
T KOG0306|consen 372 HRSDVRSLCVSSDSILLASGA-GESIKIWNRDTL--KCIRTIT--CGYILASKFVPGDRYIVLGTKNGELQVFDLASASL 446 (888)
T ss_pred chhheeEEEeecCceeeeecC-CCcEEEEEccCc--ceeEEec--cccEEEEEecCCCceEEEeccCCceEEEEeehhhh
Confidence 788999999999988888865 567999998766 4677766 35888999999999999999999999999976543
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCC--CCceeeeeeeec-cCCccccEEEEEEccCCCEE
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDS--DNWHCVQTISES-NNGHSSTIWALSFNAKGDKL 158 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~--~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l 158 (281)
+..+.+|.+.|.+++..|++..+++||.|.+|++|++..... ...+.+..+... .-.-+..|.|+.+|||+++|
T Consensus 447 ---~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~L 523 (888)
T KOG0306|consen 447 ---VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLL 523 (888)
T ss_pred ---hhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEE
Confidence 456679999999999999999999999999999998754322 111111111100 00125679999999999999
Q ss_pred EEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccce
Q 023500 159 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYK 237 (281)
Q Consensus 159 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 237 (281)
+.+--|.++++|-++..+. ..++. .|.-||.|+..+|++ ++++|+.|+++.+| ++.-+.
T Consensus 524 aVsLLdnTVkVyflDtlKF-----------flsLY-GHkLPV~smDIS~DSklivTgSADKnVKiW-----GLdFGD--- 583 (888)
T KOG0306|consen 524 AVSLLDNTVKVYFLDTLKF-----------FLSLY-GHKLPVLSMDISPDSKLIVTGSADKNVKIW-----GLDFGD--- 583 (888)
T ss_pred EEEeccCeEEEEEecceee-----------eeeec-ccccceeEEeccCCcCeEEeccCCCceEEe-----ccccch---
Confidence 9999999999996653221 22233 388999999999875 78999999999999 333332
Q ss_pred eeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 238 MLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 238 ~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
+-+...+|...|.++.|.|+. .+|.+||.|+.|+-||-
T Consensus 584 -CHKS~fAHdDSvm~V~F~P~~-~~FFt~gKD~kvKqWDg 621 (888)
T KOG0306|consen 584 -CHKSFFAHDDSVMSVQFLPKT-HLFFTCGKDGKVKQWDG 621 (888)
T ss_pred -hhhhhhcccCceeEEEEcccc-eeEEEecCcceEEeech
Confidence 334456899999999999975 56789999999999973
No 85
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.3e-24 Score=157.23 Aligned_cols=249 Identities=23% Similarity=0.363 Sum_probs=181.4
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCc---eeeeeeecCCCCCeeEEEEcC----CCCEEEEecC-CCcEEE
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGD---YECVATLEGHENEVKSVSWNA----SGTLLATCGR-DKSVWI 73 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~---~~~~~~~~~h~~~v~~v~~~~----~~~~l~s~~~-d~~v~~ 73 (281)
|.+.|.|.+|+|.|+++|||++|..|++.-.+... ..+-..++-|++.|..++|-. .|..|+++|. |..|.+
T Consensus 88 hkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~ 167 (350)
T KOG0641|consen 88 HKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYI 167 (350)
T ss_pred cCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEE
Confidence 78899999999999999999999999987543221 112235677999999999943 2456666653 666666
Q ss_pred EEecCCCeeEEeEeecCCccceeEE-EecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCC---ccccEEEE
Q 023500 74 WEVMPGNEFECVSVLQGHAQDVKMV-QWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNG---HSSTIWAL 149 (281)
Q Consensus 74 w~~~~~~~~~~~~~~~~~~~~v~~v-~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~~ 149 (281)
=|...++. ...+.+|..-|-.+ .| ++-.+++||.|.+|++||+.-. .++..+...... -...|.++
T Consensus 168 tdc~~g~~---~~a~sghtghilalysw--n~~m~~sgsqdktirfwdlrv~-----~~v~~l~~~~~~~glessavaav 237 (350)
T KOG0641|consen 168 TDCGRGQG---FHALSGHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVN-----SCVNTLDNDFHDGGLESSAVAAV 237 (350)
T ss_pred eecCCCCc---ceeecCCcccEEEEEEe--cCcEEEccCCCceEEEEeeecc-----ceeeeccCcccCCCcccceeEEE
Confidence 67666654 45577888877665 44 4568999999999999987543 133333221111 13568999
Q ss_pred EEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccC
Q 023500 150 SFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKD 228 (281)
Q Consensus 150 ~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~ 228 (281)
+..|.|++|++|-.|..+.+||++.+.+ +..+. .|...|.++.|+|.. ++++++.|..+++-+...+
T Consensus 238 ~vdpsgrll~sg~~dssc~lydirg~r~-----------iq~f~-phsadir~vrfsp~a~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 238 AVDPSGRLLASGHADSSCMLYDIRGGRM-----------IQRFH-PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred EECCCcceeeeccCCCceEEEEeeCCce-----------eeeeC-CCccceeEEEeCCCceEEEEecccceEEEeecccc
Confidence 9999999999999999999999975432 22222 378899999999975 6889999999999987653
Q ss_pred CCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 229 DLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 229 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
...+-+ .+ ....|...+..+.|+|++- -|++.+.|.++.+|-+.
T Consensus 306 la~el~--~~---vv~ehkdk~i~~rwh~~d~-sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 306 LAHELP--IM---VVAEHKDKAIQCRWHPQDF-SFISSSADKTATLWALN 349 (350)
T ss_pred hhhcCc--eE---EEEeccCceEEEEecCccc-eeeeccCcceEEEeccC
Confidence 221111 11 2346888888899999875 46789999999999764
No 86
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=8.4e-27 Score=180.18 Aligned_cols=243 Identities=23% Similarity=0.366 Sum_probs=178.3
Q ss_pred CCccceeEEEEcCCC-CEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCC
Q 023500 1 MHTRTVRSCAWSPSG-KLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 1 ~h~~~i~~~~~~~~~-~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~ 79 (281)
-|.+.|.+++=+|.. ..+|+|+.||.++|||.... ++..++++|.+.|..+.+.. ..++++|+|++|+.|.+...
T Consensus 64 gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR--~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~ 139 (433)
T KOG0268|consen 64 GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR--ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP 139 (433)
T ss_pred ccccccchhhcCcchhhhhhccccCceEEEEehhhh--hhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCC
Confidence 388999999999977 78999999999999998665 46789999999999999976 77999999999999984321
Q ss_pred Ce--e----------------------E-----------EeEeecCCccceeEEEecCCCC-eEEEEecCCeEEEEeCCC
Q 023500 80 NE--F----------------------E-----------CVSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAED 123 (281)
Q Consensus 80 ~~--~----------------------~-----------~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~ 123 (281)
.. . + ++..+.-..+.|.+++|+|... .|++|+.|++|.++|...
T Consensus 140 p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~ 219 (433)
T KOG0268|consen 140 PLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQ 219 (433)
T ss_pred cceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEeccc
Confidence 00 0 0 1112222345678899999765 678888999999998876
Q ss_pred CCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEE
Q 023500 124 TDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSV 203 (281)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 203 (281)
.. .+..+.. ...-+.++|+|....++++..|..+..||+.... +++..+. .|...|.++
T Consensus 220 ~~-----Pl~KVi~-----~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~----------~p~~v~~-dhvsAV~dV 278 (433)
T KOG0268|consen 220 AS-----PLKKVIL-----TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS----------RPLNVHK-DHVSAVMDV 278 (433)
T ss_pred CC-----ccceeee-----eccccceecCccccceeeccccccceehhhhhhc----------ccchhhc-ccceeEEEe
Confidence 42 1222221 2334679999988889999999999999875221 1222222 367789999
Q ss_pred EeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 204 HWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 204 ~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
.|+|-| .+++|+.|+++++|........ ........ ..|.++.|+.+.+ +++|||+|+.||+|.-
T Consensus 279 dfsptG~EfvsgsyDksIRIf~~~~~~SR-----diYhtkRM---q~V~~Vk~S~Dsk-yi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 279 DFSPTGQEFVSGSYDKSIRIFPVNHGHSR-----DIYHTKRM---QHVFCVKYSMDSK-YIISGSDDGNVRLWKA 344 (433)
T ss_pred ccCCCcchhccccccceEEEeecCCCcch-----hhhhHhhh---heeeEEEEecccc-EEEecCCCcceeeeec
Confidence 999977 5999999999999966543211 11111111 2388999999876 5779999999999984
No 87
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=1.5e-25 Score=180.44 Aligned_cols=213 Identities=22% Similarity=0.382 Sum_probs=156.9
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCcee--eeeeecC-CCCCeeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYE--CVATLEG-HENEVKSVSWNASGTLLATCGRDKSVWIWEVMP 78 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~--~~~~~~~-h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~ 78 (281)
|++.|.++++.|.|-+|++||.|-.+++||..+-+-. ....+.. -...|++++|++.|..|+..+..-.++|+|=..
T Consensus 166 gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG 245 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDG 245 (641)
T ss_pred CceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCC
Confidence 6788999999999999999999999999997653311 1112222 234688999999999988888778889988432
Q ss_pred CCeeEE---------eEeecCCccceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEE
Q 023500 79 GNEFEC---------VSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWA 148 (281)
Q Consensus 79 ~~~~~~---------~~~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 148 (281)
....++ +...++|...++|.+|||... .+++++.|+++++|+++...... +.+.+ ....+.+-.++.
T Consensus 246 ~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~-qVik~--k~~~g~Rv~~ts 322 (641)
T KOG0772|consen 246 FEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQL-QVIKT--KPAGGKRVPVTS 322 (641)
T ss_pred ceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhe-eEEee--ccCCCcccCcee
Confidence 222222 245679999999999999765 79999999999999988653211 11111 112244567889
Q ss_pred EEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCc--ceEEEEeCCCc-eeeecCCCCcEEEEec
Q 023500 149 LSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDR--TIFSVHWSREG-IIASGAADDSVQFFVE 225 (281)
Q Consensus 149 ~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~-~~~~~~~d~~~~~~~~ 225 (281)
++|++++..+|+|+.||.|++|+..... .++...+...|.. .|.|+.|+++| +|++-+.|+++++|++
T Consensus 323 C~~nrdg~~iAagc~DGSIQ~W~~~~~~---------v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDL 393 (641)
T KOG0772|consen 323 CAWNRDGKLIAAGCLDGSIQIWDKGSRT---------VRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDL 393 (641)
T ss_pred eecCCCcchhhhcccCCceeeeecCCcc---------cccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeec
Confidence 9999999999999999999999863211 1222233334544 89999999987 6888999999999986
Q ss_pred c
Q 023500 226 S 226 (281)
Q Consensus 226 ~ 226 (281)
.
T Consensus 394 r 394 (641)
T KOG0772|consen 394 R 394 (641)
T ss_pred c
Confidence 5
No 88
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=2.5e-26 Score=174.45 Aligned_cols=216 Identities=20% Similarity=0.394 Sum_probs=165.4
Q ss_pred eeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCC------------C--e-eEEeEeecCCccceeEEEecCCC
Q 023500 40 VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG------------N--E-FECVSVLQGHAQDVKMVQWHPTM 104 (281)
Q Consensus 40 ~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~------------~--~-~~~~~~~~~~~~~v~~v~~~p~~ 104 (281)
...+..|+.++.+.+|+|||.++++||.|.+|++.|+... + . -..++++..|.+.|+++.|||..
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 3456789999999999999999999999999999998621 0 0 13467888999999999999999
Q ss_pred CeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCc
Q 023500 105 DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYA 184 (281)
Q Consensus 105 ~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~ 184 (281)
..|++++.|++||++|+....- ++....++ ...+|.++.|+|.|++|+.|..-..+++||++..+....-+.
T Consensus 185 ~ILiS~srD~tvKlFDfsK~sa--KrA~K~~q-----d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanP- 256 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSA--KRAFKVFQ-----DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANP- 256 (430)
T ss_pred heEEeccCCCeEEEEecccHHH--HHHHHHhh-----ccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCc-
Confidence 9999999999999999876421 11111222 246789999999999999999999999999986553222111
Q ss_pred ccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCC-CCeeEEEEcCCCCee
Q 023500 185 SWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHD-MDVNSVQWSPGERRL 262 (281)
Q Consensus 185 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~ 262 (281)
...|...|+++.+++.+ ++++++.||.+++|+- ... +........|. ..|.++.|..+++ +
T Consensus 257 --------d~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDG-----VS~---rCv~t~~~AH~gsevcSa~Ftkn~k-y 319 (430)
T KOG0640|consen 257 --------DDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDG-----VSN---RCVRTIGNAHGGSEVCSAVFTKNGK-Y 319 (430)
T ss_pred --------ccccccceeEEEecCCccEEEEeccCCcEEeecc-----ccH---HHHHHHHhhcCCceeeeEEEccCCe-E
Confidence 11367889999999865 7889999999999943 111 22222344563 4688899998876 4
Q ss_pred EEEeCCCCeEEEEEcccC
Q 023500 263 LASASDDGMIKIWELANT 280 (281)
Q Consensus 263 ~~s~~~Dg~v~iw~~~~~ 280 (281)
+++.|-|..+++|++...
T Consensus 320 iLsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 320 ILSSGKDSTVKLWEISTG 337 (430)
T ss_pred EeecCCcceeeeeeecCC
Confidence 679999999999998754
No 89
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=1.1e-26 Score=182.09 Aligned_cols=245 Identities=20% Similarity=0.339 Sum_probs=190.0
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...+..+.|-++...|++|+.|..|++|+...++.+...++.|..++|+.++|.++++++++++.|+++++|++...+
T Consensus 174 h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r- 252 (459)
T KOG0288|consen 174 HEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR- 252 (459)
T ss_pred cccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchh-
Confidence 7788999999999999999999999999998887766788899999999999999999999999999999999996554
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
...++.+|.+.|+++.|......+++|+.|.+||+||+... .|..++.. ...+..+..+ ...+++|
T Consensus 253 --~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~-----~C~kt~l~-----~S~cnDI~~~--~~~~~Sg 318 (459)
T KOG0288|consen 253 --LRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKA-----YCSKTVLP-----GSQCNDIVCS--ISDVISG 318 (459)
T ss_pred --hhhhhcccccceeeehhhccccceeeccccchhhhhhhhhh-----heeccccc-----cccccceEec--ceeeeec
Confidence 35678999999999999988777999999999999977653 45555542 2445555554 3468889
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 240 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 240 (281)
-.|++|++||....... ... ...+.|.++..+.++ .+++++.|.++.+.+.....+.. .+.
T Consensus 319 H~DkkvRfwD~Rs~~~~-----------~sv--~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~-----~~s 380 (459)
T KOG0288|consen 319 HFDKKVRFWDIRSADKT-----------RSV--PLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQ-----TFS 380 (459)
T ss_pred ccccceEEEeccCCcee-----------eEe--ecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEE-----Eee
Confidence 99999999997643211 111 134578889888877 47788899999999765432221 111
Q ss_pred eeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 241 ~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
....--...++.+.|+|++. ++++||.||.|+||++..+
T Consensus 381 A~g~k~asDwtrvvfSpd~~-YvaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 381 AEGFKCASDWTRVVFSPDGS-YVAAGSADGSVYIWSVFTG 419 (459)
T ss_pred ccccccccccceeEECCCCc-eeeeccCCCcEEEEEccCc
Confidence 11111123488999999876 6889999999999998654
No 90
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=7.4e-26 Score=179.43 Aligned_cols=216 Identities=22% Similarity=0.431 Sum_probs=166.6
Q ss_pred CccceeEEEEcCCCC-EEEEeeCCCcEEEEecCCCc-----eeeeeeecCCCCCeeEEEEcC-CCCEEEEecCCCcEEEE
Q 023500 2 HTRTVRSCAWSPSGK-LLATASFDATTCIWEDVGGD-----YECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIW 74 (281)
Q Consensus 2 h~~~i~~~~~~~~~~-~l~tg~~d~~i~lw~~~~~~-----~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~~w 74 (281)
|++.-..+.|++... .|++|+.|+.|++||..... ..+...+.+|...|..++|+| ....++++++|+.+.+|
T Consensus 176 H~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iw 255 (422)
T KOG0264|consen 176 HEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIW 255 (422)
T ss_pred ecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEE
Confidence 455566788999655 78899999999999975432 234567889999999999999 56788999999999999
Q ss_pred EecCCCeeEEeEeecCCccceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEcc
Q 023500 75 EVMPGNEFECVSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA 153 (281)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 153 (281)
|++.. +.++.....+|...|+|++|+|.+. +||+||.|++|++||++.... ++.++ .+|...|.++.|+|
T Consensus 256 D~R~~-~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~----~lh~~----e~H~dev~~V~WSP 326 (422)
T KOG0264|consen 256 DTRSN-TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK----PLHTF----EGHEDEVFQVEWSP 326 (422)
T ss_pred EcCCC-CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc----Cceec----cCCCcceEEEEeCC
Confidence 99864 4455677889999999999999755 689999999999999876531 23333 48999999999999
Q ss_pred CC-CEEEEeeCCCcEEEEeCCcccccc--CCCCcccceeEEeecccCcceEEEEeCCCc--eeeecCCCCcEEEEecc
Q 023500 154 KG-DKLVSCSDDLTIKIWGADITRMQS--GDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSVQFFVES 226 (281)
Q Consensus 154 ~~-~~l~s~~~d~~i~~w~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~~~~~~~~ 226 (281)
.. ..|++++.|+.+.+||+.-..-.. .+....-..+...-+.|...|..++|.|.. .+++.+.|+.+++|.+.
T Consensus 327 h~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 327 HNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 75 589999999999999975322111 111011111223345688999999999975 78899999999999665
No 91
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=8.2e-25 Score=172.79 Aligned_cols=240 Identities=21% Similarity=0.289 Sum_probs=186.3
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeE
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE 83 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~ 83 (281)
..|+++...|....++||+.|..+.++|...++ .+..++||...|+.+.|+|+...+++++.|..|++|......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q--~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s--- 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQ--ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS--- 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhh--hhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc---
Confidence 567888888887788999999999999876654 478899999999999999999999999999999999975443
Q ss_pred EeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeC
Q 023500 84 CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD 163 (281)
Q Consensus 84 ~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 163 (281)
+......|...|+.+..||++.++++++.|++.-+.++++.. ++...... ...-.+++.+|||||-.|.+|..
T Consensus 295 ~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~-----~lt~vs~~--~s~v~~ts~~fHpDgLifgtgt~ 367 (506)
T KOG0289|consen 295 EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGS-----QLTVVSDE--TSDVEYTSAAFHPDGLIFGTGTP 367 (506)
T ss_pred CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCc-----EEEEEeec--cccceeEEeeEcCCceEEeccCC
Confidence 345667899999999999999999999999999888776642 22222211 11234789999999999999999
Q ss_pred CCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce-eeecCCCCcEEEEecccCCCcCCccceeeeee
Q 023500 164 DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKK 242 (281)
Q Consensus 164 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (281)
||.++|||++... ....+. .|..+|..++|+.+|+ +++++.|+.+++|+.++.... +.+..
T Consensus 368 d~~vkiwdlks~~-----------~~a~Fp-ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~-----kt~~l- 429 (506)
T KOG0289|consen 368 DGVVKIWDLKSQT-----------NVAKFP-GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNF-----KTIQL- 429 (506)
T ss_pred CceEEEEEcCCcc-----------ccccCC-CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhccc-----ceeec-
Confidence 9999999986432 122333 3899999999999987 566677888999988764322 22211
Q ss_pred ccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 243 EKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 243 ~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
.-..+++++.|.+.|++ ++.+|.|=.|++++
T Consensus 430 --~~~~~v~s~~fD~SGt~-L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 430 --DEKKEVNSLSFDQSGTY-LGIAGSDLQVYICK 460 (506)
T ss_pred --cccccceeEEEcCCCCe-EEeecceeEEEEEe
Confidence 11236999999998875 55667777777665
No 92
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=3.2e-25 Score=184.07 Aligned_cols=228 Identities=22% Similarity=0.369 Sum_probs=177.1
Q ss_pred ccceeE-EEEcC-CCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC
Q 023500 3 TRTVRS-CAWSP-SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 3 ~~~i~~-~~~~~-~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
...|.+ +++.+ ++-++++|+.|+.+.+|...+. .+..++.||...|.|++...++. ++|||.|.++++|.+.
T Consensus 57 ~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~--~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--- 130 (745)
T KOG0301|consen 57 KGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQA--EPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--- 130 (745)
T ss_pred cceeeccceeccccCcceEeecccceEEEEecCCC--CchhhhhccccceeeeecCCcCc-eEecccccceEEecch---
Confidence 344554 67775 4556889999999999987655 46889999999999999887777 9999999999999763
Q ss_pred eeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
++..++.+|...|..+..-|.. .++|||.|.+||+|.-.. ++. ...+|+.-|..+++-+++ .|++
T Consensus 131 --~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~-------~l~----tf~gHtD~VRgL~vl~~~-~flS 195 (745)
T KOG0301|consen 131 --ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGT-------LLK----TFSGHTDCVRGLAVLDDS-HFLS 195 (745)
T ss_pred --hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCCc-------hhh----hhccchhheeeeEEecCC-CeEe
Confidence 3456789999999999999987 999999999999994322 222 335899999999998775 6889
Q ss_pred eeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEE-eCCCceeeecCCCCcEEEEecccCCCcCCccceee
Q 023500 161 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVH-WSREGIIASGAADDSVQFFVESKDDLIDGPSYKML 239 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 239 (281)
|++||.|++|++.... +..+ ..|..-+.+++ ..+++.+++++.|+++++|... .+
T Consensus 196 csNDg~Ir~w~~~ge~------------l~~~-~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-----------e~ 251 (745)
T KOG0301|consen 196 CSNDGSIRLWDLDGEV------------LLEM-HGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-----------EC 251 (745)
T ss_pred ecCCceEEEEeccCce------------eeee-eccceEEEEEEecCCCCeEEEecCCceEEEeecC-----------ce
Confidence 9999999999885321 1111 23667788887 6678899999999999999553 11
Q ss_pred eeeccCCCC-CeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 240 LKKEKAHDM-DVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 240 ~~~~~~h~~-~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
. ..-.|.. .|+++.+-++|. +++|+.||.||||...
T Consensus 252 ~-q~I~lPttsiWsa~~L~NgD--Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 252 V-QVITLPTTSIWSAKVLLNGD--IVVGGSDGRVRVFTVD 288 (745)
T ss_pred E-EEEecCccceEEEEEeeCCC--EEEeccCceEEEEEec
Confidence 1 1112322 588888887765 5689999999999865
No 93
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.94 E-value=4.4e-25 Score=171.51 Aligned_cols=253 Identities=26% Similarity=0.425 Sum_probs=187.3
Q ss_pred CccceeEEEEcCCCC--EEEEeeCCCcEEEEecCC--------------CceeeeeeecCCCCCeeEEEEcCC-CCEEEE
Q 023500 2 HTRTVRSCAWSPSGK--LLATASFDATTCIWEDVG--------------GDYECVATLEGHENEVKSVSWNAS-GTLLAT 64 (281)
Q Consensus 2 h~~~i~~~~~~~~~~--~l~tg~~d~~i~lw~~~~--------------~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s 64 (281)
|.+.|+.+.-++-++ +.|+=+..|.+.||+... ....++.++.+|.+.=+.++|||- -..|+|
T Consensus 150 h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Lls 229 (440)
T KOG0302|consen 150 HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLS 229 (440)
T ss_pred cccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccccc
Confidence 567788888887664 556667779999998431 244578899999999999999993 346888
Q ss_pred ecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCcc
Q 023500 65 CGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHS 143 (281)
Q Consensus 65 ~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~ 143 (281)
|.--+.|.+|....+.-......+.+|...|..++|+|... .|+|||.|++|+|||+....... ++ . .++|.
T Consensus 230 GDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~--~~---~--~kAh~ 302 (440)
T KOG0302|consen 230 GDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA--AV---S--TKAHN 302 (440)
T ss_pred CccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccc--ee---E--eeccC
Confidence 88888999999876542223355778999999999999865 79999999999999998764222 11 1 15789
Q ss_pred ccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC--CceeeecCCCCcEE
Q 023500 144 STIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR--EGIIASGAADDSVQ 221 (281)
Q Consensus 144 ~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~d~~~~ 221 (281)
+-|+.+.|+..-.+|++|+.||+++|||++..+.. .++..+ .+|..+|+++.|+| +..+++++.|..+.
T Consensus 303 sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~--------~pVA~f-k~Hk~pItsieW~p~e~s~iaasg~D~Qit 373 (440)
T KOG0302|consen 303 SDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG--------QPVATF-KYHKAPITSIEWHPHEDSVIAASGEDNQIT 373 (440)
T ss_pred CceeeEEccCCcceeeecCCCceEEEEEhhhccCC--------CcceeE-EeccCCeeEEEeccccCceEEeccCCCcEE
Confidence 99999999988779999999999999998644321 222233 36899999999997 56899999999999
Q ss_pred EEecccCCC------c--CC--ccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCe
Q 023500 222 FFVESKDDL------I--DG--PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGM 271 (281)
Q Consensus 222 ~~~~~~~~~------~--~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~ 271 (281)
+|++.-+.- . .+ ....+++. .......|..+.|+++-+.++++.+.||.
T Consensus 374 iWDlsvE~D~ee~~~~a~~~L~dlPpQLLF-VHqGQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 374 IWDLSVEADEEEIDQEAAEGLQDLPPQLLF-VHQGQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred EEEeeccCChhhhccccccchhcCCceeEE-EecchhHhhhheeccCCCCeEEEecccce
Confidence 998753211 0 00 00111222 12234568899999988888888888885
No 94
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=7.4e-25 Score=160.48 Aligned_cols=239 Identities=18% Similarity=0.271 Sum_probs=178.4
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|-..|..++.+.|..-|++|+.|..+.+||+++++. +..+.+|.+.|+.++|+.+...+++||.|.++++||.++. .
T Consensus 58 hG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv--~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~-s 134 (307)
T KOG0316|consen 58 HGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKV--DRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSR-S 134 (307)
T ss_pred CCceeeeccccccccccccCCCCceEEEEEcccCee--eeecccccceeeEEEecCcceEEEeccccceeEEEEcccC-C
Confidence 667899999999999999999999999999999864 6788999999999999999999999999999999998754 3
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
.+++.++..-.+.|.++.... ..|++||.||+++.|++......+ . --..+|+++.|++++..++.+
T Consensus 135 ~ePiQildea~D~V~Si~v~~--heIvaGS~DGtvRtydiR~G~l~s--------D---y~g~pit~vs~s~d~nc~La~ 201 (307)
T KOG0316|consen 135 FEPIQILDEAKDGVSSIDVAE--HEIVAGSVDGTVRTYDIRKGTLSS--------D---YFGHPITSVSFSKDGNCSLAS 201 (307)
T ss_pred CCccchhhhhcCceeEEEecc--cEEEeeccCCcEEEEEeecceeeh--------h---hcCCcceeEEecCCCCEEEEe
Confidence 456777777777888887754 479999999999999887653211 1 113569999999999999999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLK 241 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 241 (281)
+.|+++++.|-..++.... ++... ..+..+.|.-...+..+++|+.||.+.+|+.-.. .+..
T Consensus 202 ~l~stlrLlDk~tGklL~s-----YkGhk----n~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~---------~~~s 263 (307)
T KOG0316|consen 202 SLDSTLRLLDKETGKLLKS-----YKGHK----NMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE---------TQIS 263 (307)
T ss_pred eccceeeecccchhHHHHH-----hcccc----cceeeeeeeecccceeEEeccCCceEEEEEeccc---------eeee
Confidence 9999999998766543211 11100 0122233332234668999999999999966432 1223
Q ss_pred eccCCCCC-eeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 242 KEKAHDMD-VNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 242 ~~~~h~~~-v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
....|... |++++++|.-..++ +++ ++.+..|-
T Consensus 264 k~~~~~~v~v~dl~~hp~~~~f~-~A~-~~~~~~~~ 297 (307)
T KOG0316|consen 264 KLSVVSTVIVTDLSCHPTMDDFI-TAT-GHGDLFWY 297 (307)
T ss_pred eeccCCceeEEeeecccCcccee-Eec-CCceecee
Confidence 33445555 79999999876544 554 34455553
No 95
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.94 E-value=4e-26 Score=182.24 Aligned_cols=217 Identities=23% Similarity=0.444 Sum_probs=166.5
Q ss_pred eeeeecCCCCCeeEEEEcC-CCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEE
Q 023500 39 CVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIK 117 (281)
Q Consensus 39 ~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~ 117 (281)
.+.++.||+..|.++.|.| .+.+|+++|.|+.|+||++-... .+++++.+|...|..++|++++..++|+|.|+.++
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~--~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK 283 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR--RCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLK 283 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc--ceehhhhcchhhhhhhhccccCCeeeeeecceeee
Confidence 4678899999999999999 89999999999999999997633 58999999999999999999999999999999999
Q ss_pred EEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCC-CEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeeccc
Q 023500 118 VWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG-DKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYH 196 (281)
Q Consensus 118 ~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (281)
+||++++. +...+.. ...+.|+.|+|++ ..+++|+.|+.|+-||++.++.... ...|
T Consensus 284 lwDtETG~-----~~~~f~~-----~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqe------------Yd~h 341 (503)
T KOG0282|consen 284 LWDTETGQ-----VLSRFHL-----DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQE------------YDRH 341 (503)
T ss_pred eeccccce-----EEEEEec-----CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHH------------HHhh
Confidence 99998763 4444431 3457899999998 7899999999999999986553221 1235
Q ss_pred CcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcC------------------C------------------cccee-
Q 023500 197 DRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLID------------------G------------------PSYKM- 238 (281)
Q Consensus 197 ~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~------------------~------------------~~~~~- 238 (281)
-+.+..+.|-+++ .+++.+.|+++++|......... . +.++.
T Consensus 342 Lg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~n 421 (503)
T KOG0282|consen 342 LGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLN 421 (503)
T ss_pred hhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccC
Confidence 5677888888765 68888999999999654321110 0 00000
Q ss_pred eeeeccCCC--CCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 239 LLKKEKAHD--MDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 239 ~~~~~~~h~--~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
..+...+|. +.-..+.|||+|. +|++|..||.+.+||....
T Consensus 422 kkK~feGh~vaGys~~v~fSpDG~-~l~SGdsdG~v~~wdwkt~ 464 (503)
T KOG0282|consen 422 KKKRFEGHSVAGYSCQVDFSPDGR-TLCSGDSDGKVNFWDWKTT 464 (503)
T ss_pred HhhhhcceeccCceeeEEEcCCCC-eEEeecCCccEEEeechhh
Confidence 011234453 2345689999986 6889999999999998653
No 96
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=2.2e-25 Score=174.93 Aligned_cols=237 Identities=20% Similarity=0.372 Sum_probs=175.8
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeE
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE 83 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~ 83 (281)
..|+.++|.+++++++..++|+++++|++.... ..+++.||.+.|+++.|......+++|+.|.+|++||++.. .
T Consensus 220 g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r--~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~---~ 294 (459)
T KOG0288|consen 220 GNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR--LRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKA---Y 294 (459)
T ss_pred CCcceeeecCCCceEEeecCCCceeeeeccchh--hhhhhcccccceeeehhhccccceeeccccchhhhhhhhhh---h
Confidence 569999999999999999999999999987654 46789999999999999888777999999999999999753 3
Q ss_pred EeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeC
Q 023500 84 CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD 163 (281)
Q Consensus 84 ~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 163 (281)
|.+++.. .+.+..|..+ ...++||..|++|++||+.... +..... .+ +.|+++..++++..|++++.
T Consensus 295 C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~-----~~~sv~----~g-g~vtSl~ls~~g~~lLsssR 361 (459)
T KOG0288|consen 295 CSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSAD-----KTRSVP----LG-GRVTSLDLSMDGLELLSSSR 361 (459)
T ss_pred eeccccc-cccccceEec--ceeeeecccccceEEEeccCCc-----eeeEee----cC-cceeeEeeccCCeEEeeecC
Confidence 4443332 2234444444 4578999999999999876653 222222 22 47999999999999999999
Q ss_pred CCcEEEEeCCccccccCCCCcccceeEEeecc-cCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeee
Q 023500 164 DLTIKIWGADITRMQSGDGYASWRHLCTISGY-HDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLK 241 (281)
Q Consensus 164 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 241 (281)
|.++++.|...... ++..+..++ .......+.|+|++ ++++|+.|+++.+|.+..+.+. +. ..
T Consensus 362 Ddtl~viDlRt~eI---------~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE-----~~-l~ 426 (459)
T KOG0288|consen 362 DDTLKVIDLRTKEI---------RQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLE-----KV-LS 426 (459)
T ss_pred CCceeeeecccccE---------EEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEE-----EE-ec
Confidence 99999999865432 222222221 11225667788875 7889999999999977554221 11 11
Q ss_pred eccCCCC-CeeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 242 KEKAHDM-DVNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 242 ~~~~h~~-~v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
..+.. .|++++|+|.|.. +++++.++.+.+|.
T Consensus 427 --~s~s~~aI~s~~W~~sG~~-Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 427 --LSTSNAAITSLSWNPSGSG-LLSADKQKAVTLWT 459 (459)
T ss_pred --cCCCCcceEEEEEcCCCch-hhcccCCcceEecC
Confidence 12222 6999999998876 56888899999993
No 97
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.4e-25 Score=185.07 Aligned_cols=242 Identities=20% Similarity=0.351 Sum_probs=192.9
Q ss_pred CCCEEEEeeCCCcEEEEecCCCce----eeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeec
Q 023500 14 SGKLLATASFDATTCIWEDVGGDY----ECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQ 89 (281)
Q Consensus 14 ~~~~l~tg~~d~~i~lw~~~~~~~----~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~ 89 (281)
.+++|.|||-||.|++|+...... .....++.|..-|+.+....+|+-|+|+|.|-+|++|+..... ..|+.++.
T Consensus 36 ~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-~~c~stir 114 (735)
T KOG0308|consen 36 NGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-TFCMSTIR 114 (735)
T ss_pred CCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-chhHhhhh
Confidence 567899999999999998644322 2467889999999999999999999999999999999987665 45788899
Q ss_pred CCccceeEEEe-cCCCCeEEEEecCCeEEEEeCCCCCC---CCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCC
Q 023500 90 GHAQDVKMVQW-HPTMDVLFSCSYDNTIKVWWAEDTDS---DNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDL 165 (281)
Q Consensus 90 ~~~~~v~~v~~-~p~~~~l~s~s~d~~v~~w~~~~~~~---~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~ 165 (281)
.|.+.|.|+++ -++..+++||+-|+.|++||++.... ..+.. .+......|+...|.+++.++.+..+++|+..+
T Consensus 115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~-~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek 193 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNN-VTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEK 193 (735)
T ss_pred cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccc-cccccCCCCCccceeeeecCCcceEEEecCccc
Confidence 99999999999 77788999999999999999986521 00000 111122237889999999999999999999999
Q ss_pred cEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeecc
Q 023500 166 TIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEK 244 (281)
Q Consensus 166 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (281)
.+++||.+..+. ...+. .|..-|..+-.+++| .++++++|+++++|++..+ +++....
T Consensus 194 ~lr~wDprt~~k-----------imkLr-GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ---------rCl~T~~ 252 (735)
T KOG0308|consen 194 DLRLWDPRTCKK-----------IMKLR-GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ---------RCLATYI 252 (735)
T ss_pred ceEEeccccccc-----------eeeee-ccccceEEEEEcCCCCeEeecCCCceEEeeecccc---------ceeeeEE
Confidence 999999875431 22222 588889999888887 6999999999999987643 2344466
Q ss_pred CCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 245 AHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 245 ~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
.|+..|+++.-+|.=. .+.+|+.||.|..=|+++
T Consensus 253 vH~e~VWaL~~~~sf~-~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 253 VHKEGVWALQSSPSFT-HVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred eccCceEEEeeCCCcc-eEEecCCCCcEEecccCC
Confidence 7988899999998544 567999999998877776
No 98
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=6e-25 Score=167.63 Aligned_cols=249 Identities=30% Similarity=0.473 Sum_probs=192.2
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEe------cCC--------C-----------------------c-eeeeeee
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWE------DVG--------G-----------------------D-YECVATL 43 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~------~~~--------~-----------------------~-~~~~~~~ 43 (281)
|.+.|++++|++++.+++|++.|++..||. ... + . -.++..+
T Consensus 189 H~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~l 268 (481)
T KOG0300|consen 189 HTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRL 268 (481)
T ss_pred cccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeee
Confidence 789999999999999999999999999996 100 0 0 1135577
Q ss_pred cCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCC
Q 023500 44 EGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAED 123 (281)
Q Consensus 44 ~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~ 123 (281)
.+|...|.+..|-..|++++++|.|++..+||+..+. .+..+.+|....+-++-||+..++++.|.|.+.++||+..
T Consensus 269 tgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge---~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe 345 (481)
T KOG0300|consen 269 TGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGE---VVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE 345 (481)
T ss_pred eccccceEehhhhcCcceeeeeeccccceeeeeccCc---eeccccCcchhccccccCCcceEEEEeccCceeEeccchh
Confidence 8999999999999999999999999999999997664 5778899999999999999999999999999999998863
Q ss_pred CCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEE
Q 023500 124 TDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSV 203 (281)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 203 (281)
. ++.... ..||+..|+++.|..+ +.+++|+.|.+|++||++.-. .++.++ ..+.++..+
T Consensus 346 a-------I~sV~V-FQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMR----------splATI--RtdS~~NRv 404 (481)
T KOG0300|consen 346 A-------IQSVAV-FQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMR----------SPLATI--RTDSPANRV 404 (481)
T ss_pred h-------cceeee-ecccccceeEEEEecC-CceeecCCCceEEEeeecccc----------Ccceee--ecCCcccee
Confidence 2 222221 2389999999999866 478999999999999875211 112121 135566666
Q ss_pred EeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCC--CeeEEEeCCCCeEEEEEcccC
Q 023500 204 HWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGE--RRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 204 ~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
..+..+ +++.-..+..+++|+.+...+..-+ .....+|...|.|++|...- .+ |.+|+-|..+.=|++..+
T Consensus 405 avs~g~~iIAiPhDNRqvRlfDlnG~RlaRlP-----rtsRqgHrRMV~c~AW~eehp~cn-LftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 405 AVSKGHPIIAIPHDNRQVRLFDLNGNRLARLP-----RTSRQGHRRMVTCCAWLEEHPACN-LFTCGFDRMVAGWKINTP 478 (481)
T ss_pred EeecCCceEEeccCCceEEEEecCCCccccCC-----cccccccceeeeeeeccccCcccc-cccccccceeeeeEeccc
Confidence 666665 5666667889999988765332211 22346899999999998532 23 458999999999998765
No 99
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2e-23 Score=152.41 Aligned_cols=251 Identities=22% Similarity=0.294 Sum_probs=172.4
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEec---CC----------CceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCc
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWED---VG----------GDYECVATLEGHENEVKSVSWNASGTLLATCGRDKS 70 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~---~~----------~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~ 70 (281)
..|..++|+|.|.+.|.|++..+.+|-.. .. ......+.-+.|.+.|+|.+|+|+|.+|++|+.|++
T Consensus 33 qairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ 112 (350)
T KOG0641|consen 33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKT 112 (350)
T ss_pred hheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCce
Confidence 46889999999999999999999887531 11 111112333568899999999999999999999999
Q ss_pred EEEEEecCCCe--eEEeEeecCCccceeEEEecCC----CCeEEEEe-cCCeEEEEeCCCCCCCCceeeeeeeeccCCcc
Q 023500 71 VWIWEVMPGNE--FECVSVLQGHAQDVKMVQWHPT----MDVLFSCS-YDNTIKVWWAEDTDSDNWHCVQTISESNNGHS 143 (281)
Q Consensus 71 v~~w~~~~~~~--~~~~~~~~~~~~~v~~v~~~p~----~~~l~s~s-~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~ 143 (281)
|++-.+..... ...-..+.-|...|+.++|-.+ +.++++++ .|..|++=|..... .+ ....+|+
T Consensus 113 ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~--------~~-~a~sght 183 (350)
T KOG0641|consen 113 IKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ--------GF-HALSGHT 183 (350)
T ss_pred EEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC--------cc-eeecCCc
Confidence 99987754321 1112234568889999998643 33555543 44566555544331 11 2235888
Q ss_pred ccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce-eeecCCCCcEEE
Q 023500 144 STIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQF 222 (281)
Q Consensus 144 ~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~~~~ 222 (281)
+.+.++ ++=++-++++|+.|.+|++||++........+. -..-.+.....|.+++.+|.|. +++|-.|.+..+
T Consensus 184 ghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~-----~~~~~glessavaav~vdpsgrll~sg~~dssc~l 257 (350)
T KOG0641|consen 184 GHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDN-----DFHDGGLESSAVAAVAVDPSGRLLASGHADSSCML 257 (350)
T ss_pred ccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccC-----cccCCCcccceeEEEEECCCcceeeeccCCCceEE
Confidence 888654 344577999999999999999864321110000 0000011235678889999885 667778999999
Q ss_pred EecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 223 FVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
|+++.+ +.+.....|+..|+++.|+|.. .++++|+.|..|++=|+.-
T Consensus 258 ydirg~---------r~iq~f~phsadir~vrfsp~a-~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 258 YDIRGG---------RMIQRFHPHSADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred EEeeCC---------ceeeeeCCCccceeEEEeCCCc-eEEEEecccceEEEeeccc
Confidence 988764 2244567899999999999965 5678999999999988753
No 100
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=6e-25 Score=161.68 Aligned_cols=210 Identities=27% Similarity=0.539 Sum_probs=165.8
Q ss_pred CccceeEEEEcC--CCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCC--CCEEEEecCCCcEEEEEec
Q 023500 2 HTRTVRSCAWSP--SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS--GTLLATCGRDKSVWIWEVM 77 (281)
Q Consensus 2 h~~~i~~~~~~~--~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~d~~v~~w~~~ 77 (281)
|.++|+.++|.. .|.+||++++||.+.||...++++........|...|++|+|.|. |..|+.++.||+|.+.+..
T Consensus 55 h~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~ 134 (299)
T KOG1332|consen 55 HSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYD 134 (299)
T ss_pred CCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEc
Confidence 889999999988 899999999999999999888887777888899999999999884 6789999999999999998
Q ss_pred CCCeeEEeEeecCCccceeEEEecCC---C-----------CeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCcc
Q 023500 78 PGNEFECVSVLQGHAQDVKMVQWHPT---M-----------DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHS 143 (281)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~v~~~p~---~-----------~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~ 143 (281)
............+|.-.|++++|.|. + ..|++|+.|+.|+||+.+.. .|+...+ ..+|.
T Consensus 135 ~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~---~w~~e~~----l~~H~ 207 (299)
T KOG1332|consen 135 SSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD---SWKLERT----LEGHK 207 (299)
T ss_pred CCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc---chhhhhh----hhhcc
Confidence 76444455667899999999999996 3 35999999999999977653 3433333 35899
Q ss_pred ccEEEEEEccCC----CEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCC
Q 023500 144 STIWALSFNAKG----DKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADD 218 (281)
Q Consensus 144 ~~v~~~~~~~~~----~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~ 218 (281)
.-|..++|.|.- .++++|+.||++-||-.+.. ...|+.. ........+..++|+..| +|+.++.|+
T Consensus 208 dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e-------~e~wk~t--ll~~f~~~~w~vSWS~sGn~LaVs~GdN 278 (299)
T KOG1332|consen 208 DWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE-------YEPWKKT--LLEEFPDVVWRVSWSLSGNILAVSGGDN 278 (299)
T ss_pred hhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc-------cCccccc--ccccCCcceEEEEEeccccEEEEecCCc
Confidence 999999999963 47999999999999965421 1112211 111135678899999876 566667788
Q ss_pred cEEEEeccc
Q 023500 219 SVQFFVESK 227 (281)
Q Consensus 219 ~~~~~~~~~ 227 (281)
.+.+|....
T Consensus 279 kvtlwke~~ 287 (299)
T KOG1332|consen 279 KVTLWKENV 287 (299)
T ss_pred EEEEEEeCC
Confidence 899996543
No 101
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=8.2e-25 Score=176.27 Aligned_cols=221 Identities=21% Similarity=0.365 Sum_probs=158.6
Q ss_pred eeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe----eEEeEeecCCccceeEEEecCCCCeEEEEecCCeE
Q 023500 41 ATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE----FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 116 (281)
Q Consensus 41 ~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~----~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v 116 (281)
..+.+|+..|.++++.|.|-+++|||.|.+|++||++.... +..+.. +-...|++++|+|++..|+..+.....
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P--~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQP--CETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCc--ccccccceeeecCCCCeEEEEecCcce
Confidence 45678999999999999999999999999999999974332 111222 224468999999999999999999999
Q ss_pred EEEeCCCCCCCCceee------eeeeeccCCccccEEEEEEccCC-CEEEEeeCCCcEEEEeCCccccccCCCCccccee
Q 023500 117 KVWWAEDTDSDNWHCV------QTISESNNGHSSTIWALSFNAKG-DKLVSCSDDLTIKIWGADITRMQSGDGYASWRHL 189 (281)
Q Consensus 117 ~~w~~~~~~~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 189 (281)
+|+|-..... .++. ..+ ...+||.+.++|.+|+|.. ..++||+.||++|+|++...+.+.. .+
T Consensus 239 kl~DRdG~~~--~e~~KGDQYI~Dm-~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q-------Vi 308 (641)
T KOG0772|consen 239 KLLDRDGFEI--VEFSKGDQYIRDM-YNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ-------VI 308 (641)
T ss_pred eEEccCCcee--eeeeccchhhhhh-hccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhee-------EE
Confidence 9986432210 0011 111 1125899999999999975 4799999999999998763321110 01
Q ss_pred E-EeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCC--CeeEEEEcCCCCeeEEE
Q 023500 190 C-TISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDM--DVNSVQWSPGERRLLAS 265 (281)
Q Consensus 190 ~-~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~s 265 (281)
. ...+...-++.++.|++++ .+|+|+.||++++|+...... .+ .+....+|.. .|++|+|+++|. +|+|
T Consensus 309 k~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v--~p----~~~vk~AH~~g~~Itsi~FS~dg~-~LlS 381 (641)
T KOG0772|consen 309 KTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTV--RP----VMKVKDAHLPGQDITSISFSYDGN-YLLS 381 (641)
T ss_pred eeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccc--cc----ceEeeeccCCCCceeEEEeccccc-hhhh
Confidence 0 0111223467889999987 578888999999997643211 11 2233456766 899999999986 5779
Q ss_pred eCCCCeEEEEEcccC
Q 023500 266 ASDDGMIKIWELANT 280 (281)
Q Consensus 266 ~~~Dg~v~iw~~~~~ 280 (281)
-|.|+++++||+++.
T Consensus 382 Rg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 382 RGFDDTLKVWDLRQF 396 (641)
T ss_pred ccCCCceeeeecccc
Confidence 999999999999864
No 102
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=3.3e-23 Score=156.58 Aligned_cols=214 Identities=14% Similarity=0.270 Sum_probs=156.9
Q ss_pred CCccceeEEEEcC-CCCEEEEeeCCCcEEEEecCCCc------e----ee---eeeecCCCCCeeEEEEcC-CCCEEEEe
Q 023500 1 MHTRTVRSCAWSP-SGKLLATASFDATTCIWEDVGGD------Y----EC---VATLEGHENEVKSVSWNA-SGTLLATC 65 (281)
Q Consensus 1 ~h~~~i~~~~~~~-~~~~l~tg~~d~~i~lw~~~~~~------~----~~---~~~~~~h~~~v~~v~~~~-~~~~l~s~ 65 (281)
+|.+.|+.+.+.+ .|+++++|+.||.|.+||...-. . .| ...-.+|...|.++.|-| |-..+.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 5889999999999 68999999999999999975422 1 11 112247888999999999 66788999
Q ss_pred cCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCC---CCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCc
Q 023500 66 GRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT---MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGH 142 (281)
Q Consensus 66 ~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~---~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h 142 (281)
|.|.+++|||...-++ ...+ .-.+.|.+-+++|- .+++++|..|..|++.|+.+.. +.. ...||
T Consensus 121 SFDhtlKVWDtnTlQ~---a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs-----~sH----~LsGH 187 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQE---AVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS-----FSH----TLSGH 187 (397)
T ss_pred cccceEEEeeccccee---eEEe-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc-----cee----eeccc
Confidence 9999999999865443 2222 23456788888883 5678888888999999887653 222 33599
Q ss_pred cccEEEEEEccCCC-EEEEeeCCCcEEEEeCCcc--ccccCCCCc-ccceeEEeecccCcceEEEEeCCCc-eeeecCCC
Q 023500 143 SSTIWALSFNAKGD-KLVSCSDDLTIKIWGADIT--RMQSGDGYA-SWRHLCTISGYHDRTIFSVHWSREG-IIASGAAD 217 (281)
Q Consensus 143 ~~~v~~~~~~~~~~-~l~s~~~d~~i~~w~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d 217 (281)
+..|.++.|+|..+ .|++|+.||.|++||++-. .....+.-. ...+.......|...+..++|+.++ ++++++.|
T Consensus 188 r~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd 267 (397)
T KOG4283|consen 188 RDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTD 267 (397)
T ss_pred cCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCc
Confidence 99999999999876 6899999999999998622 111111000 1112222233578899999999877 58889999
Q ss_pred CcEEEEeccc
Q 023500 218 DSVQFFVESK 227 (281)
Q Consensus 218 ~~~~~~~~~~ 227 (281)
..+++|....
T Consensus 268 ~r~r~wn~~~ 277 (397)
T KOG4283|consen 268 DRIRVWNMES 277 (397)
T ss_pred cceEEeeccc
Confidence 9999996544
No 103
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=9.3e-23 Score=174.38 Aligned_cols=249 Identities=19% Similarity=0.344 Sum_probs=185.3
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|+..-+.++|.|+|++|.+++.||.|++|+......+ -.++.-+...|.+++- .+.+|++|+.+++|.++.+..+.+
T Consensus 12 ht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~-P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE-PETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred ccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC-CchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCCc
Confidence 7788899999999999999999999999987544212 2233336777877764 456999999999999999977654
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
...+.. -.-++++++++.++.+++.||.|-.|++-+..+... ....++|.++|.++.|+|.+.+||+.
T Consensus 89 ~~iL~R---ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~---------~~~lrgh~apVl~l~~~p~~~fLAvs 156 (933)
T KOG1274|consen 89 DTILAR---FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ---------EKVLRGHDAPVLQLSYDPKGNFLAVS 156 (933)
T ss_pred cceeee---eeccceEEEEecCCcEEEeecCceeEEEEeccccch---------heeecccCCceeeeeEcCCCCEEEEE
Confidence 323332 345689999999999999999999999987655421 11235899999999999999999999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeeccc-CcceEEEEeCCC-ceeeecCCCCcEEEEecccCCCcCCccceee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYH-DRTIFSVHWSRE-GIIASGAADDSVQFFVESKDDLIDGPSYKML 239 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 239 (281)
+-||.+++|++..+.... .+..+.....+. .+.+...+|+|+ |.++..+.|+.+.+|....... ..
T Consensus 157 s~dG~v~iw~~~~~~~~~-----tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~-------~f 224 (933)
T KOG1274|consen 157 SCDGKVQIWDLQDGILSK-----TLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWEL-------QF 224 (933)
T ss_pred ecCceEEEEEcccchhhh-----hcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCcee-------he
Confidence 999999999986432211 111111111112 455667899997 7899999999999996654321 11
Q ss_pred eeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 240 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 240 ~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
....+.|...+..+.|+|.|+ +||+++.||.|-|||+.
T Consensus 225 ~Lr~~~~ss~~~~~~wsPnG~-YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 225 KLRDKLSSSKFSDLQWSPNGK-YIAASTLDGQILVWNVD 262 (933)
T ss_pred eecccccccceEEEEEcCCCc-EEeeeccCCcEEEEecc
Confidence 123344555599999999986 58999999999999986
No 104
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=3e-23 Score=171.05 Aligned_cols=260 Identities=23% Similarity=0.307 Sum_probs=176.4
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcC-CCCEEEEecCCCcEEEEEecCCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
|...|..+.|.|-...|++++.|.++++||+.++...-...+.||.+.|.+++|.| +...+++||.||.|.|||+.-..
T Consensus 99 H~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~ 178 (720)
T KOG0321|consen 99 HKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNG 178 (720)
T ss_pred ccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccc
Confidence 77889999999944578999999999999998876543444789999999999999 56789999999999999986322
Q ss_pred e------------------------eEEeEeecCCccceeE---EEecCCCCeEEEEec-CCeEEEEeCCCCCCCCceee
Q 023500 81 E------------------------FECVSVLQGHAQDVKM---VQWHPTMDVLFSCSY-DNTIKVWWAEDTDSDNWHCV 132 (281)
Q Consensus 81 ~------------------------~~~~~~~~~~~~~v~~---v~~~p~~~~l~s~s~-d~~v~~w~~~~~~~~~~~~~ 132 (281)
. .+.+...+++...|.+ +-+.-|..+|++++. |+.|||||+........+..
T Consensus 179 ~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep 258 (720)
T KOG0321|consen 179 VDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEP 258 (720)
T ss_pred hhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCC
Confidence 0 0011223455556666 667788889999888 99999999976422111110
Q ss_pred eeeeeccCCc---cccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccC--cceEEEEeCC
Q 023500 133 QTISESNNGH---SSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHD--RTIFSVHWSR 207 (281)
Q Consensus 133 ~~~~~~~~~h---~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~ 207 (281)
..... ..-| .-.+.++.....|.+|...+.|+.|.+|++...... +...+.+... ..+.+ ..++
T Consensus 259 ~~~~~-~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~s---------P~~~~sg~~~~sf~vks-~lSp 327 (720)
T KOG0321|consen 259 RGSDK-YPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSIS---------PVAEFSGKLNSSFYVKS-ELSP 327 (720)
T ss_pred CcccC-ccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcC---------chhhccCcccceeeeee-ecCC
Confidence 10100 0011 233566777777777766666999999987633211 1111111111 11222 2344
Q ss_pred C-ceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 208 E-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 208 ~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
+ .++++|+.|....+|.+..-.. -.....+|...|+++.|.|....-+++|++|-.++||++.+.
T Consensus 328 d~~~l~SgSsd~~ayiw~vs~~e~--------~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 328 DDCSLLSGSSDEQAYIWVVSSPEA--------PPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred CCceEeccCCCcceeeeeecCccC--------ChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 4 4688999999999997754211 122346899999999999965444778899999999998653
No 105
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=6.8e-24 Score=164.93 Aligned_cols=215 Identities=23% Similarity=0.455 Sum_probs=160.1
Q ss_pred CccceeEEEEcCCC-CEEEEeeCCCcEEEEecCCCceee-eeeecCCCCCeeEEEEcCC-CCEEEEecCCCcEEEEEecC
Q 023500 2 HTRTVRSCAWSPSG-KLLATASFDATTCIWEDVGGDYEC-VATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMP 78 (281)
Q Consensus 2 h~~~i~~~~~~~~~-~~l~tg~~d~~i~lw~~~~~~~~~-~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~~w~~~~ 78 (281)
|...=..++|||-- ..|+||.--+.|.+|.+.++.+.. ...+.+|+..|..++|||. ...|+|||.|++|++||++.
T Consensus 210 hk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs 289 (440)
T KOG0302|consen 210 HKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRS 289 (440)
T ss_pred cCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecC
Confidence 66667789999932 246688777899999988876532 2345679999999999995 56899999999999999998
Q ss_pred CCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCC-CE
Q 023500 79 GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG-DK 157 (281)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~ 157 (281)
+....++.+ ++|...|+.+.|+....+|++|+.||+++|||+..-... +.+.++ +-|+.+|+++.|+|.. ..
T Consensus 290 ~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~--~pVA~f----k~Hk~pItsieW~p~e~s~ 362 (440)
T KOG0302|consen 290 GPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG--QPVATF----KYHKAPITSIEWHPHEDSV 362 (440)
T ss_pred CCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCC--CcceeE----EeccCCeeEEEeccccCce
Confidence 866555554 899999999999999889999999999999998765432 233333 3589999999999954 57
Q ss_pred EEEeeCCCcEEEEeCCcccc------ccCCCCcccceeEEeecccCcceEEEEeCC--CceeeecCCCCcEEEE
Q 023500 158 LVSCSDDLTIKIWGADITRM------QSGDGYASWRHLCTISGYHDRTIFSVHWSR--EGIIASGAADDSVQFF 223 (281)
Q Consensus 158 l~s~~~d~~i~~w~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~d~~~~~~ 223 (281)
|++++.|..|.+||+.+.+- ....++..+.+...+.......+..+.|++ .|++++.+.||...+.
T Consensus 363 iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfk 436 (440)
T KOG0302|consen 363 IAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFK 436 (440)
T ss_pred EEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEEE
Confidence 88888999999999864332 111222223333333322345677788887 4789998888865544
No 106
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=8e-25 Score=182.56 Aligned_cols=230 Identities=23% Similarity=0.424 Sum_probs=181.7
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|.++..-..++.+++|++|..+-||..... .++..+.+|..+|.++.|++....|++|+.+|+|++||+....
T Consensus 27 hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp--~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk- 103 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP--NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK- 103 (825)
T ss_pred hhhhhceeeeeccceeeccCCCceeeccccccCC--chhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh-
Confidence 5566777777678899999999999999975433 3456789999999999999999999999999999999997443
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
.++++.+|...+.+|.|||-+.+.++|+.|+.+++||+.... |... ..+|...|..++|+|+|.+++.+
T Consensus 104 --~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G-----c~~~----~~s~~~vv~~l~lsP~Gr~v~~g 172 (825)
T KOG0267|consen 104 --IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG-----CSHT----YKSHTRVVDVLRLSPDGRWVASG 172 (825)
T ss_pred --hhhhhhccccCcceeeeccceEEeccccccccceehhhhccC-----ceee----ecCCcceeEEEeecCCCceeecc
Confidence 367889999999999999999999999999999999876543 2222 24688999999999999999999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 240 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 240 (281)
+.|..+++||..-++.. ..+ ..|+..+.++.++|.. +++.|+.|+.+++|+...- ..+
T Consensus 173 ~ed~tvki~d~~agk~~-----------~ef-~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf---------e~I 231 (825)
T KOG0267|consen 173 GEDNTVKIWDLTAGKLS-----------KEF-KSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF---------EVI 231 (825)
T ss_pred CCcceeeeecccccccc-----------ccc-ccccccccccccCchhhhhccCCCCceeeeecccee---------EEe
Confidence 99999999987533321 111 1366778888888854 5778899999999976531 223
Q ss_pred eeccCCCCCeeEEEEcCCCCeeEEEeC
Q 023500 241 KKEKAHDMDVNSVQWSPGERRLLASAS 267 (281)
Q Consensus 241 ~~~~~h~~~v~~~~~~~~~~~~~~s~~ 267 (281)
.........|.+.+|+|++. .+.+|-
T Consensus 232 ~s~~~~~~~v~~~~fn~~~~-~~~~G~ 257 (825)
T KOG0267|consen 232 SSGKPETDGVRSLAFNPDGK-IVLSGE 257 (825)
T ss_pred eccCCccCCceeeeecCCce-eeecCc
Confidence 33344467899999999876 354554
No 107
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.92 E-value=1.4e-22 Score=156.97 Aligned_cols=117 Identities=23% Similarity=0.495 Sum_probs=102.3
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|++.|+++.|+.+|.+||||+.+|.+.||+..++.... .+.+-...+--+.|+|.++.|++|+.||.+.+|.+.+..
T Consensus 105 HKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~--~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~- 181 (399)
T KOG0296|consen 105 HKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQW--KLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA- 181 (399)
T ss_pred CCCceEEEEEccCceEEEecCCCccEEEEEcccCceEE--EeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc-
Confidence 88999999999999999999999999999987765433 333445677889999999999999999999999997542
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCC
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAED 123 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~ 123 (281)
..+++.+|...+++-.|.|+|+.++++..|++|++|+..+
T Consensus 182 --~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~kt 221 (399)
T KOG0296|consen 182 --LCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKT 221 (399)
T ss_pred --eeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCC
Confidence 3567889999999999999999999999999999998754
No 108
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=5e-23 Score=164.02 Aligned_cols=235 Identities=20% Similarity=0.274 Sum_probs=175.3
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecC-----
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP----- 78 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~----- 78 (281)
++|.+++-+|.|.+|+.|...++|.+|...++. .+..+.+|-.+|+|+.|+.||.+|+|||.||.|.+|.+..
T Consensus 82 g~v~al~s~n~G~~l~ag~i~g~lYlWelssG~--LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~ 159 (476)
T KOG0646|consen 82 GPVHALASSNLGYFLLAGTISGNLYLWELSSGI--LLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD 159 (476)
T ss_pred cceeeeecCCCceEEEeecccCcEEEEEecccc--HHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence 568999999999999988899999999998885 4667789999999999999999999999999999998742
Q ss_pred -CCeeEEeEeecCCccceeEEEecCC--CCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCC
Q 023500 79 -GNEFECVSVLQGHAQDVKMVQWHPT--MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG 155 (281)
Q Consensus 79 -~~~~~~~~~~~~~~~~v~~v~~~p~--~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 155 (281)
.....+...+..|.-.|+.+...+. ...++|+|.|.++++|++.... .+.++. .+..+.+++.+|.+
T Consensus 160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~-----LLlti~-----fp~si~av~lDpae 229 (476)
T KOG0646|consen 160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV-----LLLTIT-----FPSSIKAVALDPAE 229 (476)
T ss_pred cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce-----eeEEEe-----cCCcceeEEEcccc
Confidence 2234567788999999999887665 4589999999999999987652 223332 35778999999999
Q ss_pred CEEEEeeCCCcEEEEeCCccccccC----CCC-cccceeEEeecccC--cceEEEEeCCCc-eeeecCCCCcEEEEeccc
Q 023500 156 DKLVSCSDDLTIKIWGADITRMQSG----DGY-ASWRHLCTISGYHD--RTIFSVHWSREG-IIASGAADDSVQFFVESK 227 (281)
Q Consensus 156 ~~l~s~~~d~~i~~w~~~~~~~~~~----~~~-~~~~~~~~~~~~~~--~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~ 227 (281)
+.++.|+.+|.|-+.++.....+.. ... ........+.+ |. ..|.|++.+-+| .+++|+.||.+.+|++..
T Consensus 230 ~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~G-h~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 230 RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVG-HENESAITCLAISTDGTLLLSGDEDGKVCVWDIYS 308 (476)
T ss_pred cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeecc-ccCCcceeEEEEecCccEEEeeCCCCCEEEEecch
Confidence 9999999999988775432211111 000 11122222333 44 489999999876 688899999999997753
Q ss_pred CCCcCCccceeeeeeccCCCCCeeEEEEcCCCC
Q 023500 228 DDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGER 260 (281)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 260 (281)
+++++......++|+.+.+.|-.+
T Consensus 309 ---------~Q~iRtl~~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 309 ---------KQCIRTLQTSKGPVTNLQINPLER 332 (476)
T ss_pred ---------HHHHHHHhhhccccceeEeecccc
Confidence 222332222457788888866443
No 109
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.92 E-value=1.3e-22 Score=168.65 Aligned_cols=259 Identities=24% Similarity=0.449 Sum_probs=197.4
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCC--cee---eeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGG--DYE---CVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEV 76 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~--~~~---~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~ 76 (281)
|.+-|..+.|+|.+..|++++.|+++.+|.+.+. -+. .+..+.|..+..+...|+|+++.+++-|..|-.++|..
T Consensus 266 HeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt 345 (764)
T KOG1063|consen 266 HEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKT 345 (764)
T ss_pred cccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEec
Confidence 8899999999999988999999999999987654 222 34445566677899999999999999999999999995
Q ss_pred cCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeee---------------------
Q 023500 77 MPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTI--------------------- 135 (281)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~--------------------- 135 (281)
+....+.....+.||.+.|+.+.|+|.+.+|+++|.|-+-|++..-. +...|+.+.+.
T Consensus 346 ~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg-~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVS 424 (764)
T KOG1063|consen 346 KDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWG-RQQEWHEIARPQIHGYDLTCLSFVNEDLQFVS 424 (764)
T ss_pred cCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccc-cccceeeecccccccccceeeehccCCceeee
Confidence 55555556667889999999999999999999999999988874320 00000000000
Q ss_pred -----------------------------------------------------------------ee-------------
Q 023500 136 -----------------------------------------------------------------SE------------- 137 (281)
Q Consensus 136 -----------------------------------------------------------------~~------------- 137 (281)
+.
T Consensus 425 gAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP 504 (764)
T KOG1063|consen 425 GADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPP 504 (764)
T ss_pred cccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCC
Confidence 00
Q ss_pred ---------------ccCCccccEEEEEEccCCCEEEEeeCCC-----cEEEEeCCccccccCCCCcccceeEEeecccC
Q 023500 138 ---------------SNNGHSSTIWALSFNAKGDKLVSCSDDL-----TIKIWGADITRMQSGDGYASWRHLCTISGYHD 197 (281)
Q Consensus 138 ---------------~~~~h~~~v~~~~~~~~~~~l~s~~~d~-----~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (281)
...||...|++++.+|+++++++++... -|++|++.. |.....+ .+|.
T Consensus 505 ~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~-----------W~~~~~L-~~Hs 572 (764)
T KOG1063|consen 505 TEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN-----------WLQVQEL-EGHS 572 (764)
T ss_pred hHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc-----------hhhhhee-cccc
Confidence 0127888899999999999999998664 577887642 2222222 2588
Q ss_pred cceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 198 RTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 198 ~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
.+|+.+.|+|++ ++++.+.|+...+|....+.... ..+...+.|..-|+++.|+|++.+ |+|+|.|..|++|.
T Consensus 573 LTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e-----~~fa~~k~HtRIIWdcsW~pde~~-FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 573 LTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDE-----FRFACLKAHTRIIWDCSWSPDEKY-FATASRDKKVKVWE 646 (764)
T ss_pred eEEEEEEECCCCcEEEEeecCceEEeeeeecccchh-----hhhccccccceEEEEcccCcccce-eEEecCCceEEEEe
Confidence 999999999987 68899999999999775432211 113346789999999999999875 89999999999998
Q ss_pred ccc
Q 023500 277 LAN 279 (281)
Q Consensus 277 ~~~ 279 (281)
...
T Consensus 647 ~~~ 649 (764)
T KOG1063|consen 647 EPD 649 (764)
T ss_pred ccC
Confidence 764
No 110
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=5.3e-23 Score=155.48 Aligned_cols=253 Identities=21% Similarity=0.348 Sum_probs=174.4
Q ss_pred CccceeEEEEcC-CCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCC---CCEEEEecCCCcEEEEEec
Q 023500 2 HTRTVRSCAWSP-SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS---GTLLATCGRDKSVWIWEVM 77 (281)
Q Consensus 2 h~~~i~~~~~~~-~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~---~~~l~s~~~d~~v~~w~~~ 77 (281)
|...|..+-|.| |.-+|.+++.|+.+++||.++.+. ...|+ -++.|++-+++|- ..++|+|-.|-.|++.|+.
T Consensus 100 Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~--a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~ 176 (397)
T KOG4283|consen 100 HKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQE--AVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA 176 (397)
T ss_pred ceeeeeeeEEeeecCceeecccccceEEEeeccccee--eEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence 777899999999 667899999999999999887654 33333 4578888899984 3467777788899999998
Q ss_pred CCCeeEEeEeecCCccceeEEEecCCCCe-EEEEecCCeEEEEeCCCCCC-------CCceeeeeeeeccCCccccEEEE
Q 023500 78 PGNEFECVSVLQGHAQDVKMVQWHPTMDV-LFSCSYDNTIKVWWAEDTDS-------DNWHCVQTISESNNGHSSTIWAL 149 (281)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~-l~s~s~d~~v~~w~~~~~~~-------~~~~~~~~~~~~~~~h~~~v~~~ 149 (281)
.+. +..++.+|...|-+|.|+|...+ |++|+.||.|++||+..... ...+..+ ..+...+|.+.|+.+
T Consensus 177 SGs---~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p-~~~~n~ah~gkvngl 252 (397)
T KOG4283|consen 177 SGS---FSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPP-ILKTNTAHYGKVNGL 252 (397)
T ss_pred CCc---ceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCc-cccccccccceeeee
Confidence 764 56789999999999999999884 78999999999999976411 0101111 112345789999999
Q ss_pred EEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCC
Q 023500 150 SFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDD 229 (281)
Q Consensus 150 ~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 229 (281)
+|..++.++++++.|..+++|+...+......-.+.........+.+ ++.-..+.++..-.++.+.++....+
T Consensus 253 a~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~------~~~~~s~vfv~~p~~~~lall~~~sg- 325 (397)
T KOG4283|consen 253 AWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH------IQSMDSDVFVLFPNDGSLALLNLLEG- 325 (397)
T ss_pred eecccchhhhhccCccceEEeecccCcccccccccccccccccceEE------EeecccceEEEEecCCeEEEEEccCc-
Confidence 99999999999999999999987644322111111001111111111 11111223333334456666643321
Q ss_pred CcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 230 LIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 230 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
..+.....|-..|.+..+-|+=+. ..++..|+.+..|.+
T Consensus 326 --------s~ir~l~~h~k~i~c~~~~~~fq~-~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 326 --------SFVRRLSTHLKRINCAAYRPDFEQ-CFTGDMNGNIYMWSP 364 (397)
T ss_pred --------eEEEeeecccceeeEEeecCchhh-hhccccCCccccccc
Confidence 223445677788999999986444 458999999999976
No 111
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.92 E-value=1.6e-23 Score=154.86 Aligned_cols=199 Identities=18% Similarity=0.328 Sum_probs=157.8
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|..++|+.|.++|+||+.+..+++||.+..+ -+...+.+|.+.|..+-|....+.|+|+.+|++||+||...+..
T Consensus 99 hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~-App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~ 177 (334)
T KOG0278|consen 99 HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK-APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTE 177 (334)
T ss_pred hhheeeeEEecccchhhhccchHHHhhhhhccCCC-CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcE
Confidence 67889999999999999999999999999987654 34667889999999999988888899999999999999988865
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
.+ .+.. ...|+++..++++.++.+ +..+.|++|+...-. .+.... -+..|.+..++|+...++.|
T Consensus 178 v~---sL~~-~s~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf~-----~lKs~k-----~P~nV~SASL~P~k~~fVaG 242 (334)
T KOG0278|consen 178 VQ---SLEF-NSPVTSLEVSQDGRILTI-AYGSSVKFWDAKSFG-----LLKSYK-----MPCNVESASLHPKKEFFVAG 242 (334)
T ss_pred EE---EEec-CCCCcceeeccCCCEEEE-ecCceeEEecccccc-----ceeecc-----CccccccccccCCCceEEec
Confidence 33 2322 345899999999877655 567899999775432 122111 23557888999999999999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce-eeecCCCCcEEEEeccc
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESK 227 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~~~~~~~~~ 227 (281)
+.|..+..||...+. .+..+...|-.+|.|+.|+|+|. +++|+.||++++|....
T Consensus 243 ged~~~~kfDy~Tge-----------Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 243 GEDFKVYKFDYNTGE-----------EIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred CcceEEEEEeccCCc-----------eeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecC
Confidence 999999999876542 12223345889999999999985 68888999999997654
No 112
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=9.2e-23 Score=161.63 Aligned_cols=235 Identities=21% Similarity=0.369 Sum_probs=170.7
Q ss_pred CCEEEEeeCCCcEEEEecCC-Cceeeee------------------eecCCCCCeeEEEEcCC-CCEEEEecCCCcEEEE
Q 023500 15 GKLLATASFDATTCIWEDVG-GDYECVA------------------TLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIW 74 (281)
Q Consensus 15 ~~~l~tg~~d~~i~lw~~~~-~~~~~~~------------------~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~~w 74 (281)
|+++|.|..|..|.|||+.- ....+.. ..++|+..|.+++|+.. .+.|||||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 57999999999999999531 1111111 12379999999999885 4579999999999999
Q ss_pred EecCCCeeEEeEeecCCccceeEEEecCC-CCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEcc
Q 023500 75 EVMPGNEFECVSVLQGHAQDVKMVQWHPT-MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA 153 (281)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~-~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 153 (281)
|+..++ |..++..|...|.++.|+|. ..+|++||.|++|.+.|.......... . ...+.|-.+.|+|
T Consensus 272 D~~~g~---p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~----w-----k~~g~VEkv~w~~ 339 (463)
T KOG0270|consen 272 DVDTGK---PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKE----W-----KFDGEVEKVAWDP 339 (463)
T ss_pred EcCCCC---cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCce----E-----EeccceEEEEecC
Confidence 997765 46667779999999999996 458999999999999998754322211 1 1235678899998
Q ss_pred CCC-EEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC--CceeeecCCCCcEEEEecccCCC
Q 023500 154 KGD-KLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR--EGIIASGAADDSVQFFVESKDDL 230 (281)
Q Consensus 154 ~~~-~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~ 230 (281)
... .++++..||+++-+|++... .++.+.. .|+.+|.+++++. .+++++++.|+.+.+|.......
T Consensus 340 ~se~~f~~~tddG~v~~~D~R~~~----------~~vwt~~-AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~ 408 (463)
T KOG0270|consen 340 HSENSFFVSTDDGTVYYFDIRNPG----------KPVWTLK-AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP 408 (463)
T ss_pred CCceeEEEecCCceEEeeecCCCC----------CceeEEE-eccCCcceEEecCCCCcceeeccccceEEEEeecCCCC
Confidence 654 67778899999999876321 1222222 4888999988876 57899999999999997754322
Q ss_pred cCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 231 IDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 231 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
.. .....+. -+...|.++.|+-..+++.||..+.++|||+..
T Consensus 409 ~~--v~~~~~~-----~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 409 KS--VKEHSFK-----LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFT 450 (463)
T ss_pred cc--ccccccc-----ccceeecccCCCcceEEEecCccceEEEeeccc
Confidence 11 0000010 122566788888778899999999999999754
No 113
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=2.2e-23 Score=174.16 Aligned_cols=248 Identities=21% Similarity=0.362 Sum_probs=190.0
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcC-C--CCEEEEecCCCcEEEEEecCCC
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA-S--GTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~-~--~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
..+++++.+|+|++||+|.--|+|++|+....+ ....+++|+.+|.|+.|+. . -++|+++|.|+-|.|+|+. +
T Consensus 460 ~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~--~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~--r 535 (1080)
T KOG1408|consen 460 FGFRALAVSPDGQHLASGDRGGNLRVYDLQELE--YTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK--R 535 (1080)
T ss_pred cceEEEEECCCcceecccCccCceEEEEehhhh--hhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc--c
Confidence 358999999999999999999999999986554 3457789999999999975 2 3578999999999999985 4
Q ss_pred eeEEeEeecCCccceeEEEecCCC--CeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTM--DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~--~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 158 (281)
++..+.++.+|...|++|+|--.+ ...++++.|..|.+ +............+..+. .+ ...+..++..|..+++
T Consensus 536 ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~~~g~~f~r~t~t--~~-ktTlYDm~Vdp~~k~v 611 (1080)
T KOG1408|consen 536 NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKASSGRLFPRHTQT--LS-KTTLYDMAVDPTSKLV 611 (1080)
T ss_pred ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhccccCceeccccccc--cc-cceEEEeeeCCCcceE
Confidence 556678889999999999998776 46889999988755 333221111111111100 11 2457889999999999
Q ss_pred EEeeCCCcEEEEeCCccccccCCCCcccceeEEeec--ccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCcc
Q 023500 159 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISG--YHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPS 235 (281)
Q Consensus 159 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~ 235 (281)
++++.|..|+||++..+++ ...+++ .++.....+..+|.| ++++.++|+++.+++...+
T Consensus 612 ~t~cQDrnirif~i~sgKq-----------~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg------- 673 (1080)
T KOG1408|consen 612 VTVCQDRNIRIFDIESGKQ-----------VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG------- 673 (1080)
T ss_pred EEEecccceEEEeccccce-----------eeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc-------
Confidence 9999999999999876543 223333 355677888889987 5677789999999977543
Q ss_pred ceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 236 YKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 236 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
.++....+|.+.|+.+.|.++=+. |++.+.||.|.||.+..+
T Consensus 674 --EcvA~m~GHsE~VTG~kF~nDCkH-lISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 674 --ECVAQMTGHSEAVTGVKFLNDCKH-LISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred --hhhhhhcCcchheeeeeecccchh-heeecCCceEEEEECchh
Confidence 356667799999999999998765 569999999999998653
No 114
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.2e-22 Score=161.89 Aligned_cols=246 Identities=19% Similarity=0.266 Sum_probs=173.9
Q ss_pred CEEEEeeCC-CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccc
Q 023500 16 KLLATASFD-ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQD 94 (281)
Q Consensus 16 ~~l~tg~~d-~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~ 94 (281)
.+++++... ..|.+|........ . ..---.++|.|++-+|+|.+++.|.-.+.+.+|.+.++. .+.++.+|...
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~-~-q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~---LL~v~~aHYQ~ 125 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQV-V-QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGI---LLNVLSAHYQS 125 (476)
T ss_pred hheeeecccCccccccccCchhhh-h-hhcccccceeeeecCCCceEEEeecccCcEEEEEecccc---HHHHHHhhccc
Confidence 355555544 36778876543321 1 111235789999999999999999999999999998775 35677899999
Q ss_pred eeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC--CCEEEEeeCCCcEEEEeC
Q 023500 95 VKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK--GDKLVSCSDDLTIKIWGA 172 (281)
Q Consensus 95 v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d~~i~~w~~ 172 (281)
|+|+.|+.++.+|+|||.||.|.+|.+.+.-................|+-+|+.+...+. ..+|+|.+.|.++++||+
T Consensus 126 ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdl 205 (476)
T KOG0646|consen 126 ITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDL 205 (476)
T ss_pred eeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEe
Confidence 999999999999999999999999976532111110011111223478999998887654 468999999999999998
Q ss_pred CccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCC-----c--CCccceeeeeecc
Q 023500 173 DITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDL-----I--DGPSYKMLLKKEK 244 (281)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~ 244 (281)
..+.. +.+ ...+.++.++..+|.. .+..|+.+|.+.+........ . .............
T Consensus 206 S~g~L-----------Llt--i~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~ 272 (476)
T KOG0646|consen 206 SLGVL-----------LLT--ITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLV 272 (476)
T ss_pred cccee-----------eEE--EecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeec
Confidence 65421 112 2356788888888854 678889999887765432110 0 0011122234456
Q ss_pred CCCC--CeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 245 AHDM--DVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 245 ~h~~--~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
+|.. +|+|++.+.++. +|++|+.||.|+|||+.+.
T Consensus 273 Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 273 GHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred cccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecchH
Confidence 7877 999999999885 7899999999999998753
No 115
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.91 E-value=3.2e-22 Score=150.81 Aligned_cols=257 Identities=24% Similarity=0.427 Sum_probs=180.6
Q ss_pred CccceeEEEEcC-CCCEEEEeeCCC-------cEEEEecCCC-------ceeeeeeec-CCCCCeeEEEEcCCCCEEEEe
Q 023500 2 HTRTVRSCAWSP-SGKLLATASFDA-------TTCIWEDVGG-------DYECVATLE-GHENEVKSVSWNASGTLLATC 65 (281)
Q Consensus 2 h~~~i~~~~~~~-~~~~l~tg~~d~-------~i~lw~~~~~-------~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~ 65 (281)
|.+.|+.++-+| +.++|+|+-+|. .+.||..... ..+++..+. .+.+.|.|+.|.|++..+++.
T Consensus 62 ~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm 141 (370)
T KOG1007|consen 62 HAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASM 141 (370)
T ss_pred CCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEe
Confidence 457899999999 667888886642 3679975321 234555554 677899999999999999887
Q ss_pred cCCCcEEEEEecCCCeeEE---eEeecCCccceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCC
Q 023500 66 GRDKSVWIWEVMPGNEFEC---VSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNG 141 (281)
Q Consensus 66 ~~d~~v~~w~~~~~~~~~~---~~~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~ 141 (281)
. |..|.+|++..+.+... ...-.+|....++-+|+|..+ ..+....|+++..||+.+.. +...+ ..+
T Consensus 142 ~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~-----~~~sI---~dA 212 (370)
T KOG1007|consen 142 D-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMK-----KNNSI---EDA 212 (370)
T ss_pred c-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchh-----hhcch---hhh
Confidence 6 78999999976654211 011123566788899999433 34444568999999987532 11222 247
Q ss_pred ccccEEEEEEccCCC-EEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC--CceeeecCCCC
Q 023500 142 HSSTIWALSFNAKGD-KLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR--EGIIASGAADD 218 (281)
Q Consensus 142 h~~~v~~~~~~~~~~-~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~d~ 218 (281)
|...|..++|+|+.+ +|++|+.||.|++||.+..+.. +.... .|...+.++.|.+ +.+++++++|.
T Consensus 213 Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p----------v~el~-~HsHWvW~VRfn~~hdqLiLs~~SDs 281 (370)
T KOG1007|consen 213 HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP----------VQELP-GHSHWVWAVRFNPEHDQLILSGGSDS 281 (370)
T ss_pred hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcc----------ccccC-CCceEEEEEEecCccceEEEecCCCc
Confidence 888899999999865 7999999999999998744321 11122 3677899999887 45799999999
Q ss_pred cEEEEecccCC----------CcC----------CccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 219 SVQFFVESKDD----------LID----------GPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 219 ~~~~~~~~~~~----------~~~----------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
.+.++...... ..+ .+...-.+.....|+..|.+++|+..++.+||+-+.||.+.|=.+.
T Consensus 282 ~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 282 AVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred eeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 99888543211 000 0111112334567999999999999999999999999999875544
No 116
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=8.1e-23 Score=160.75 Aligned_cols=209 Identities=21% Similarity=0.413 Sum_probs=164.1
Q ss_pred eeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEE
Q 023500 39 CVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKV 118 (281)
Q Consensus 39 ~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~ 118 (281)
..+.+..|+.+|+-+.||++|++|||++.|.+.-+|.+......+...++.+|...|..+.|+|+..++++|+.|..+++
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence 35677889999999999999999999999999999999877777778899999999999999999999999999999999
Q ss_pred EeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCc
Q 023500 119 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDR 198 (281)
Q Consensus 119 w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (281)
||+..++. ... ...+|...+.+.+|.||+..+++|+.|+.+..||.+..- ...|+.. ...
T Consensus 296 wDv~tgd~-----~~~---y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~------~~~W~gv------r~~ 355 (519)
T KOG0293|consen 296 WDVDTGDL-----RHL---YPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI------LGNWEGV------RDP 355 (519)
T ss_pred ccCCcchh-----hhh---cccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch------hhccccc------ccc
Confidence 99887642 111 223456788999999999999999999999999987321 1123322 235
Q ss_pred ceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 199 TIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 199 ~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
.|.+++.+++| .+++.+.|..++++..... .. .. ...-..+|++...+.+++ +++..-.+..+++||+
T Consensus 356 ~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~-----~d----r~-lise~~~its~~iS~d~k-~~LvnL~~qei~LWDl 424 (519)
T KOG0293|consen 356 KVHDLAITYDGKYVLLVTVDKKIRLYNREAR-----VD----RG-LISEEQPITSFSISKDGK-LALVNLQDQEIHLWDL 424 (519)
T ss_pred eeEEEEEcCCCcEEEEEecccceeeechhhh-----hh----hc-cccccCceeEEEEcCCCc-EEEEEcccCeeEEeec
Confidence 67788888876 5667779999999954321 00 10 112245799999999886 4556667999999998
Q ss_pred c
Q 023500 278 A 278 (281)
Q Consensus 278 ~ 278 (281)
.
T Consensus 425 ~ 425 (519)
T KOG0293|consen 425 E 425 (519)
T ss_pred c
Confidence 6
No 117
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=1.3e-22 Score=150.85 Aligned_cols=213 Identities=27% Similarity=0.460 Sum_probs=158.0
Q ss_pred eecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCC-CCeEEEEecCCeEEEEe
Q 023500 42 TLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT-MDVLFSCSYDNTIKVWW 120 (281)
Q Consensus 42 ~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~-~~~l~s~s~d~~v~~w~ 120 (281)
.+.+|...|.+|+|+.+|..|++|+.|+++++|++...+ ........+|.+.|..++|+|. .+.+++++.|.+|++||
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r-~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR-FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchh-hhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 456899999999999999999999999999999997553 1223456789988999999885 45899999999999999
Q ss_pred CCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCC-----------------
Q 023500 121 AEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGY----------------- 183 (281)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~----------------- 183 (281)
+... ++...+.. +..-.-+.|+|++++++.+..|..|.+.|.+..++......
T Consensus 94 ~r~~-----k~~~~i~~-----~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Ff 163 (313)
T KOG1407|consen 94 IRSG-----KCTARIET-----KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFF 163 (313)
T ss_pred eccC-----cEEEEeec-----cCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEE
Confidence 8765 34444432 12234589999999999999999999998764433211111
Q ss_pred -------------cccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCC
Q 023500 184 -------------ASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMD 249 (281)
Q Consensus 184 -------------~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 249 (281)
++++++..+. .|.....||+++|.| ++++|+.|-.+.+|++..- .+.....-++-+
T Consensus 164 lt~GlG~v~ILsypsLkpv~si~-AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL---------iC~R~isRldwp 233 (313)
T KOG1407|consen 164 LTNGLGCVEILSYPSLKPVQSIK-AHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL---------ICERCISRLDWP 233 (313)
T ss_pred EecCCceEEEEeccccccccccc-cCCcceEEEEECCCCceEeeccccceeeccChhHh---------hhheeeccccCc
Confidence 1222222332 356667789999987 6889999999999977531 112223347789
Q ss_pred eeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 250 VNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 250 v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
|+.++|+.+|+ +||++|+|-.|-|=+
T Consensus 234 VRTlSFS~dg~-~lASaSEDh~IDIA~ 259 (313)
T KOG1407|consen 234 VRTLSFSHDGR-MLASASEDHFIDIAE 259 (313)
T ss_pred eEEEEeccCcc-eeeccCccceEEeEe
Confidence 99999999875 799999998875543
No 118
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.7e-23 Score=175.84 Aligned_cols=196 Identities=19% Similarity=0.402 Sum_probs=150.3
Q ss_pred CccceeEEEEcCCC-CEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcC-CCCEEEEecCCCcEEEEEecCC
Q 023500 2 HTRTVRSCAWSPSG-KLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 2 h~~~i~~~~~~~~~-~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~ 79 (281)
|.+.|+++.|++.- .+|++||.||.|++||....+. ..++.+..+.|..|+|+| .+..++++.+.|.+++||++..
T Consensus 132 H~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S--~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp 209 (839)
T KOG0269|consen 132 HERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS--KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQP 209 (839)
T ss_pred hccceeeeeeccCCccEEEecCCCceEEEEeeecccc--cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCc
Confidence 88999999999954 6889999999999999866542 446667889999999999 5788999999999999999865
Q ss_pred CeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCC-EE
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD-KL 158 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l 158 (281)
. .+...+.+|.+.|.|+.|||+..+||||+.|++|+||+...........+.+ .++|.++.|.|+.. +|
T Consensus 210 ~--r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT--------iapv~rVkWRP~~~~hL 279 (839)
T KOG0269|consen 210 D--RCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT--------IAPVGRVKWRPARSYHL 279 (839)
T ss_pred h--hHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEee--------cceeeeeeeccCccchh
Confidence 5 3556788999999999999999999999999999999987654332222222 36789999999765 68
Q ss_pred EEee--CCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC--CceeeecCCCCcE
Q 023500 159 VSCS--DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR--EGIIASGAADDSV 220 (281)
Q Consensus 159 ~s~~--~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~d~~~ 220 (281)
++|+ .|-.|++||+.-.+. +...+. .|+..+..+.|.. ...+.+++.|+.+
T Consensus 280 Atcsmv~dtsV~VWDvrRPYI----------P~~t~~-eH~~~vt~i~W~~~d~~~l~s~sKD~tv 334 (839)
T KOG0269|consen 280 ATCSMVVDTSVHVWDVRRPYI----------PYATFL-EHTDSVTGIAWDSGDRINLWSCSKDGTV 334 (839)
T ss_pred hhhhccccceEEEEeeccccc----------cceeee-ccCccccceeccCCCceeeEeecCccHH
Confidence 8876 577999999862221 112222 3666677777765 3355666666654
No 119
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.91 E-value=1.8e-22 Score=154.06 Aligned_cols=166 Identities=22% Similarity=0.426 Sum_probs=146.8
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCc-eeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCee
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGD-YECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF 82 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~-~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~ 82 (281)
.+|+|-+|++|++.+|.+-+.+.+.||...+.+ ++..++++.|+..|++|+|+|..++|++++.|+...||....+..+
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~W 90 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTW 90 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCee
Confidence 689999999999999999999999999988777 7889999999999999999999999999999999999999778888
Q ss_pred EEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee
Q 023500 83 ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS 162 (281)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 162 (281)
.+.-++..+...+++|.|+|.++.++.||....|.||.++..+ .|--...+ .+.++..|.+++|+|++-+|+.|+
T Consensus 91 kptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~EN--dWWVsKhi---kkPirStv~sldWhpnnVLlaaGs 165 (361)
T KOG1523|consen 91 KPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEN--DWWVSKHI---KKPIRSTVTSLDWHPNNVLLAAGS 165 (361)
T ss_pred ccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccc--ceehhhhh---CCccccceeeeeccCCcceecccc
Confidence 8888888999999999999999999999999999999988653 23222222 234678899999999999999999
Q ss_pred CCCcEEEEeCCc
Q 023500 163 DDLTIKIWGADI 174 (281)
Q Consensus 163 ~d~~i~~w~~~~ 174 (281)
.|+.+++|..-+
T Consensus 166 ~D~k~rVfSayI 177 (361)
T KOG1523|consen 166 TDGKCRVFSAYI 177 (361)
T ss_pred cCcceeEEEEee
Confidence 999999996543
No 120
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=8.9e-22 Score=162.64 Aligned_cols=232 Identities=26% Similarity=0.470 Sum_probs=176.4
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEee
Q 023500 9 CAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVL 88 (281)
Q Consensus 9 ~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~ 88 (281)
++|+ ..+.+|.|. +..+.+|+..+++...+..+. ...|+++.|+++|.+|+.|-.+|.|.+||..... .+..+
T Consensus 183 ldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k---~~~~~ 255 (484)
T KOG0305|consen 183 LDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFG--EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQK---KTRTL 255 (484)
T ss_pred hhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecC--CCceEEEEECCCCCEEEEeecCCeEEEEehhhcc---ccccc
Confidence 4677 445666654 457999998887755555543 7899999999999999999999999999986443 34556
Q ss_pred cC-CccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcE
Q 023500 89 QG-HAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTI 167 (281)
Q Consensus 89 ~~-~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i 167 (281)
.+ |...|-+++|+ ...+.+|+.|+.|..+|+...... . . ...+|...|..+.|++++.+|++|+.|+.+
T Consensus 256 ~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~----~---~-~~~~H~qeVCgLkws~d~~~lASGgnDN~~ 325 (484)
T KOG0305|consen 256 RGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHV----V---S-TLQGHRQEVCGLKWSPDGNQLASGGNDNVV 325 (484)
T ss_pred cCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhh----h---h-hhhcccceeeeeEECCCCCeeccCCCccce
Confidence 66 99999999999 568999999999999988654311 1 1 245799999999999999999999999999
Q ss_pred EEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC--CceeeecC--CCCcEEEEecccCCCcCCccceeeeeec
Q 023500 168 KIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR--EGIIASGA--ADDSVQFFVESKDDLIDGPSYKMLLKKE 243 (281)
Q Consensus 168 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (281)
.|||.... .+...+. .|...|..++|+| .++||+|+ .|+.+++|+...+.. +...
T Consensus 326 ~Iwd~~~~-----------~p~~~~~-~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~---------i~~v 384 (484)
T KOG0305|consen 326 FIWDGLSP-----------EPKFTFT-EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR---------IDSV 384 (484)
T ss_pred EeccCCCc-----------cccEEEe-ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE---------eccc
Confidence 99987321 1222222 4788999999997 67888776 699999997754311 1111
Q ss_pred cCCCCCeeEEEEcCCCCeeEEEeCC-CCeEEEEEccc
Q 023500 244 KAHDMDVNSVQWSPGERRLLASASD-DGMIKIWELAN 279 (281)
Q Consensus 244 ~~h~~~v~~~~~~~~~~~~~~s~~~-Dg~v~iw~~~~ 279 (281)
. -...|..+.|++..+.++.+-|. ++.|.||+...
T Consensus 385 d-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps 420 (484)
T KOG0305|consen 385 D-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS 420 (484)
T ss_pred c-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc
Confidence 1 23569999999988777766544 77899999754
No 121
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=3.3e-24 Score=178.96 Aligned_cols=223 Identities=27% Similarity=0.453 Sum_probs=179.5
Q ss_pred CCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCcc
Q 023500 14 SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQ 93 (281)
Q Consensus 14 ~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~ 93 (281)
-+.+++.+.-+-.+++||.. .+..|...|.++..-..++.+++||.|..+-+|.+.... ++..+.+|..
T Consensus 3 ~~~~~m~~~~~t~Lr~~~~~--------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~---~i~S~~~hes 71 (825)
T KOG0267|consen 3 GMEFLMKTKRATKLRVWDTR--------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN---AITSLTGHES 71 (825)
T ss_pred cccccceeeeeeccccccch--------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCc---hhheeeccCC
Confidence 34445555556667788632 334688888898887788999999999999999885333 4566899999
Q ss_pred ceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 023500 94 DVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 94 ~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~ 173 (281)
.|.++.|++...+|++|+.+|+||+||++... .++++ .+|...+.+++|+|-+.++++|+.|..+++||.+
T Consensus 72 pIeSl~f~~~E~LlaagsasgtiK~wDleeAk-----~vrtL----tgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~R 142 (825)
T KOG0267|consen 72 PIESLTFDTSERLLAAGSASGTIKVWDLEEAK-----IVRTL----TGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIR 142 (825)
T ss_pred cceeeecCcchhhhcccccCCceeeeehhhhh-----hhhhh----hccccCcceeeeccceEEeccccccccceehhhh
Confidence 99999999999999999999999999988642 33434 4899999999999999999999999999999987
Q ss_pred ccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeE
Q 023500 174 ITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNS 252 (281)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 252 (281)
...+ ...+.+ |...+..+.++|+| .++.++.|..+++|+...+ .+...+..|+..+..
T Consensus 143 k~Gc-----------~~~~~s-~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag---------k~~~ef~~~e~~v~s 201 (825)
T KOG0267|consen 143 KKGC-----------SHTYKS-HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG---------KLSKEFKSHEGKVQS 201 (825)
T ss_pred ccCc-----------eeeecC-CcceeEEEeecCCCceeeccCCcceeeeeccccc---------ccccccccccccccc
Confidence 3322 223333 78889999999999 6788888999999976543 234556789999999
Q ss_pred EEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 253 VQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 253 ~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
+.|+|.+ .++++||.|++|++||+.
T Consensus 202 le~hp~e-~Lla~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 202 LEFHPLE-VLLAPGSSDRTVRFWDLE 226 (825)
T ss_pred cccCchh-hhhccCCCCceeeeeccc
Confidence 9999965 689999999999999987
No 122
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.90 E-value=5.5e-23 Score=157.43 Aligned_cols=161 Identities=22% Similarity=0.441 Sum_probs=137.8
Q ss_pred CCccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeec-CCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCC
Q 023500 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLE-GHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 1 ~h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~ 79 (281)
||.+.|.|+.|+.|..++|+|+.||.|++|...++. |+..+. +|...|+|+.|+.|+..++++|.|.++++.-+.++
T Consensus 261 Mmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~--ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG 338 (508)
T KOG0275|consen 261 MMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQ--CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG 338 (508)
T ss_pred ecccceEEEeecccHHHhhccCcCCcEEEEEEecch--HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc
Confidence 688999999999999999999999999999988874 676776 89999999999999999999999999999998776
Q ss_pred CeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC-CCEE
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK-GDKL 158 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l 158 (281)
+ ++..+++|.+.|+-+.|.+++..++++|.||+|++|+.... .|+.++... +...+|+++..-|. .+.+
T Consensus 339 K---~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Ktt-----eC~~Tfk~~--~~d~~vnsv~~~PKnpeh~ 408 (508)
T KOG0275|consen 339 K---CLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTT-----ECLSTFKPL--GTDYPVNSVILLPKNPEHF 408 (508)
T ss_pred h---hHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcch-----hhhhhccCC--CCcccceeEEEcCCCCceE
Confidence 4 56778999999999999999999999999999999966543 355555322 34466788877774 4689
Q ss_pred EEeeCCCcEEEEeCC
Q 023500 159 VSCSDDLTIKIWGAD 173 (281)
Q Consensus 159 ~s~~~d~~i~~w~~~ 173 (281)
+.|-+..++.+.++.
T Consensus 409 iVCNrsntv~imn~q 423 (508)
T KOG0275|consen 409 IVCNRSNTVYIMNMQ 423 (508)
T ss_pred EEEcCCCeEEEEecc
Confidence 999999999888764
No 123
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.4e-22 Score=167.52 Aligned_cols=245 Identities=23% Similarity=0.399 Sum_probs=183.0
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEE-cCCCCEEEEecCCCcEEEEEecCCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSW-NASGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~-~~~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
|.+-|+.++..-+|+.|+++|.|.+|++|+.....-.|..++..|++.|.|++. -++...+||||-|+.|++||+..+.
T Consensus 72 HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~ 151 (735)
T KOG0308|consen 72 HSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGT 151 (735)
T ss_pred hHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcc
Confidence 778889999999999999999999999999866544578888999999999999 7788899999999999999998653
Q ss_pred e-------eEEeEeec-CCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEc
Q 023500 81 E-------FECVSVLQ-GHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN 152 (281)
Q Consensus 81 ~-------~~~~~~~~-~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 152 (281)
+ ......+. ++...|.+++.++.+..+++|+..+.+++||..... .+..+ .||+..|.++..+
T Consensus 152 ~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~-----kimkL----rGHTdNVr~ll~~ 222 (735)
T KOG0308|consen 152 ATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCK-----KIMKL----RGHTDNVRVLLVN 222 (735)
T ss_pred hhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEecccccc-----ceeee----eccccceEEEEEc
Confidence 2 11122333 788899999999999999999999999999776532 23333 3899999999999
Q ss_pred cCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCc
Q 023500 153 AKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLI 231 (281)
Q Consensus 153 ~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~ 231 (281)
+||+.+++++.||+|++||+.-. +-+.++ ..|...+.++..+++. .+.+|+.|+.+..-++...
T Consensus 223 dDGt~~ls~sSDgtIrlWdLgqQ-----------rCl~T~-~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~--- 287 (735)
T KOG0308|consen 223 DDGTRLLSASSDGTIRLWDLGQQ-----------RCLATY-IVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP--- 287 (735)
T ss_pred CCCCeEeecCCCceEEeeecccc-----------ceeeeE-EeccCceEEEeeCCCcceEEecCCCCcEEecccCCc---
Confidence 99999999999999999987522 222222 2367778888877764 6889999999888755431
Q ss_pred CCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 232 DGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 232 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
....++... +.+|..+..+.....+ =.++.|+.|+=|..
T Consensus 288 ---~~~tlick~---daPv~~l~~~~~~~~~-WvtTtds~I~rW~~ 326 (735)
T KOG0308|consen 288 ---AKSTLICKE---DAPVLKLHLHEHDNSV-WVTTTDSSIKRWKL 326 (735)
T ss_pred ---hhheEeecC---CCchhhhhhccccCCc-eeeeccccceecCC
Confidence 111222222 2245555555332222 34666777777764
No 124
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.4e-21 Score=148.46 Aligned_cols=221 Identities=25% Similarity=0.532 Sum_probs=156.4
Q ss_pred cCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecC-CCeeEEeEeecCCccceeEEEec-CC-CCeEEEEecCCeEEEEe
Q 023500 44 EGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP-GNEFECVSVLQGHAQDVKMVQWH-PT-MDVLFSCSYDNTIKVWW 120 (281)
Q Consensus 44 ~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~-~~~~~~~~~~~~~~~~v~~v~~~-p~-~~~l~s~s~d~~v~~w~ 120 (281)
.+|.+-|+|+.|.+.|+++++|+.|.++++||... ...+.+....+.|.+.|..|.|- |. |+.++++|.|++++||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 47899999999999999999999999999999643 35677888899999999999995 43 78999999999999995
Q ss_pred CCCC--C--CCCceeeeeeeeccCCccccEEEEEEccC--CCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEE---
Q 023500 121 AEDT--D--SDNWHCVQTISESNNGHSSTIWALSFNAK--GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCT--- 191 (281)
Q Consensus 121 ~~~~--~--~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~--- 191 (281)
-... + ...|....++. -.+..|+.+.|.|. |-.|++++.||.+|||+.-. + -++..|....-
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~----DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~d--p---~nLs~W~Lq~Ei~~ 160 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLV----DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPD--P---MNLSQWTLQHEIQN 160 (361)
T ss_pred ecccccccccceeEEEEEee----cCCcceeEEEecchhcceEEEEeccCcEEEEEecCC--c---cccccchhhhhhhh
Confidence 4211 1 12233333332 23678999999985 56899999999999996420 0 01111111111
Q ss_pred ---eecccCcceEEEEeCCCc----eeeecCCC-----CcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCC
Q 023500 192 ---ISGYHDRTIFSVHWSREG----IIASGAAD-----DSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGE 259 (281)
Q Consensus 192 ---~~~~~~~~v~~~~~~~~~----~~~~~~~d-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 259 (281)
-.+.+..+..|++|.+.. +++.|+.+ +.+.+|...... ...........|..+|++++|.|.-
T Consensus 161 ~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~-----rKw~kva~L~d~~dpI~di~wAPn~ 235 (361)
T KOG2445|consen 161 VIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENG-----RKWLKVAELPDHTDPIRDISWAPNI 235 (361)
T ss_pred ccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCc-----ceeeeehhcCCCCCcceeeeecccc
Confidence 112245677889998743 46666554 367777443321 1122334556899999999999963
Q ss_pred ---CeeEEEeCCCCeEEEEEccc
Q 023500 260 ---RRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 260 ---~~~~~s~~~Dg~v~iw~~~~ 279 (281)
..++|+++.|| |+||.+..
T Consensus 236 Gr~y~~lAvA~kDg-v~I~~v~~ 257 (361)
T KOG2445|consen 236 GRSYHLLAVATKDG-VRIFKVKV 257 (361)
T ss_pred CCceeeEEEeecCc-EEEEEEee
Confidence 34799999999 99999873
No 125
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=8.6e-21 Score=157.62 Aligned_cols=248 Identities=23% Similarity=0.295 Sum_probs=183.2
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCC-CCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCee
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHE-NEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF 82 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~-~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~ 82 (281)
..|+++||+.+.+.||.+-.||+|.||++..+-+ +...+.++. ..|..++|. .+.+|+|.+.+|+|.-||+...++
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~-~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~- 102 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWF-LEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQ- 102 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccCCCce-eeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCce-
Confidence 5799999999999999999999999999866432 334444444 689999999 567889999999999999976653
Q ss_pred EEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee
Q 023500 83 ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS 162 (281)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 162 (281)
..........|.+++.+|.+..++.|++||.++....+... .+........+++|.++.|+|++..+++|+
T Consensus 103 --~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~-------I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs 173 (691)
T KOG2048|consen 103 --KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDK-------ITYKRSLMRQKSRVLSLSWNPTGTKIAGGS 173 (691)
T ss_pred --eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCce-------EEEEeecccccceEEEEEecCCccEEEecc
Confidence 45566777889999999999999999999977776544321 111112223468899999999999999999
Q ss_pred CCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeeee
Q 023500 163 DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKK 242 (281)
Q Consensus 163 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (281)
.||.|++||.....-..-. ..+..........-|.++.+-.++.+++|-+-|.+.+|+...+ .+...
T Consensus 174 ~Dg~Iriwd~~~~~t~~~~----~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~g---------TLiqS 240 (691)
T KOG2048|consen 174 IDGVIRIWDVKSGQTLHII----TMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFG---------TLIQS 240 (691)
T ss_pred cCceEEEEEcCCCceEEEe----eecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCc---------chhhh
Confidence 9999999998643211100 0001111111223456777788999999999999999966443 23445
Q ss_pred ccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 243 EKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 243 ~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
...|...|.+++-.+++.+ +.++|-|+.|.-+..
T Consensus 241 ~~~h~adVl~Lav~~~~d~-vfsaGvd~~ii~~~~ 274 (691)
T KOG2048|consen 241 HSCHDADVLALAVADNEDR-VFSAGVDPKIIQYSL 274 (691)
T ss_pred hhhhhcceeEEEEcCCCCe-EEEccCCCceEEEEe
Confidence 5678999999999998665 568888888766553
No 126
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=2e-22 Score=162.33 Aligned_cols=238 Identities=17% Similarity=0.314 Sum_probs=183.5
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeE
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE 83 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~ 83 (281)
..|+.+...|||+-|++|++-.++.|||...........+..-.-..++++.+||.+..+++..||.|.|||+.+..
T Consensus 466 nyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~--- 542 (705)
T KOG0639|consen 466 NYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT--- 542 (705)
T ss_pred cceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce---
Confidence 45889999999999999999999999998765443333444333456788999999999999999999999997542
Q ss_pred EeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeC
Q 023500 84 CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD 163 (281)
Q Consensus 84 ~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 163 (281)
.++.+.+|.+.+.|+..++++..|.+|+-|++|+.||+.+.. .+++ --...+|.++.+.|.++.|+.|..
T Consensus 543 ~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregr--------qlqq--hdF~SQIfSLg~cP~~dWlavGMe 612 (705)
T KOG0639|consen 543 LVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGR--------QLQQ--HDFSSQIFSLGYCPTGDWLAVGME 612 (705)
T ss_pred eeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhh--------hhhh--hhhhhhheecccCCCccceeeecc
Confidence 478899999999999999999999999999999999886542 1111 123578999999999999999999
Q ss_pred CCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce-eeecCCCCcEEEEecccCCCcCCccceeeeee
Q 023500 164 DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKK 242 (281)
Q Consensus 164 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (281)
++.+.+-.+... .......|+.-|.++.|.+.|. +++.+.|+.+..|....+ -.++ +
T Consensus 613 ns~vevlh~skp-------------~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG--------asiF-q 670 (705)
T KOG0639|consen 613 NSNVEVLHTSKP-------------EKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG--------ASIF-Q 670 (705)
T ss_pred cCcEEEEecCCc-------------cceeecccccEEEEEEecccCceeeecCchhhhhhccCccc--------ccee-e
Confidence 998887754311 1111234788899999999875 788888999888844321 1111 1
Q ss_pred ccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 243 EKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 243 ~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
. .-.+.|+++..+.+++ +|+||+.|....||.+.
T Consensus 671 s-kE~SsVlsCDIS~ddk-yIVTGSGdkkATVYeV~ 704 (705)
T KOG0639|consen 671 S-KESSSVLSCDISFDDK-YIVTGSGDKKATVYEVI 704 (705)
T ss_pred c-cccCcceeeeeccCce-EEEecCCCcceEEEEEe
Confidence 1 1246799999999875 68899999988888763
No 127
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.90 E-value=5.4e-21 Score=142.71 Aligned_cols=211 Identities=22% Similarity=0.379 Sum_probs=165.1
Q ss_pred eecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeC
Q 023500 42 TLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121 (281)
Q Consensus 42 ~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~ 121 (281)
.+.||+.+++.+.++.+|.+|++++.|.++.||--.+++ .+.++.+|...|.|+...-+...+++||.|.++++||+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe---rlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE---RLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDV 81 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCc---eeeeecCCCceEEEEEecCCcceeeeccccceeEEEEc
Confidence 457899999999999999999999999999999876553 57889999999999999999999999999999999999
Q ss_pred CCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeC-----CCcEEEEeCCccccccCCCCcccceeEEeeccc
Q 023500 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD-----DLTIKIWGADITRMQSGDGYASWRHLCTISGYH 196 (281)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-----d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (281)
+... ++.+.. .+.+|..+.|++++.+++.+.. .+.|.++|++....... .-.+...+. .+
T Consensus 82 ~tGk-----~la~~k-----~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~----s~ep~~kI~-t~ 146 (327)
T KOG0643|consen 82 ETGK-----QLATWK-----TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDID----SEEPYLKIP-TP 146 (327)
T ss_pred CCCc-----EEEEee-----cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhc----ccCceEEec-CC
Confidence 8763 333332 3477999999999988777654 35788888753211100 111122222 25
Q ss_pred CcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEE
Q 023500 197 DRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIW 275 (281)
Q Consensus 197 ~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw 275 (281)
+..+...-|++-+ .+++|..|+.+..|+...+ ..+......|+..|+.+.++|+.. ++++++.|.+-++|
T Consensus 147 ~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g--------~~~v~s~~~h~~~Ind~q~s~d~T-~FiT~s~Dttakl~ 217 (327)
T KOG0643|consen 147 DSKITSALWGPLGETIIAGHEDGSISIYDARTG--------KELVDSDEEHSSKINDLQFSRDRT-YFITGSKDTTAKLV 217 (327)
T ss_pred ccceeeeeecccCCEEEEecCCCcEEEEEcccC--------ceeeechhhhccccccccccCCcc-eEEecccCccceee
Confidence 6778888999854 6889999999999977643 234555677889999999999865 68899999999999
Q ss_pred Eccc
Q 023500 276 ELAN 279 (281)
Q Consensus 276 ~~~~ 279 (281)
|+..
T Consensus 218 D~~t 221 (327)
T KOG0643|consen 218 DVRT 221 (327)
T ss_pred eccc
Confidence 9864
No 128
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=2.3e-21 Score=159.06 Aligned_cols=258 Identities=29% Similarity=0.472 Sum_probs=160.8
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCE-EEEecCCCcEEEEEecCCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL-LATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-l~s~~~d~~v~~w~~~~~~ 80 (281)
|++.|++|...|.|..||+|+.||+++||...++. |+.++. ..+.|.||+|+|.+.. +++.+.+..+.+-+-.-+.
T Consensus 399 Htg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgR--cvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~ 475 (733)
T KOG0650|consen 399 HTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGR--CVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGD 475 (733)
T ss_pred cCCeEEEEEecCCcceeeecCCCCcEEEEEeecce--EEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCccccc
Confidence 88999999999999999999999999999998885 566654 5679999999998764 3333333344444321110
Q ss_pred ------------------e---------------eE-EeEeecCCccceeEEEecCCCCeEEEEecCC---eEEEEeCCC
Q 023500 81 ------------------E---------------FE-CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN---TIKVWWAED 123 (281)
Q Consensus 81 ------------------~---------------~~-~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~---~v~~w~~~~ 123 (281)
+ .+ .+...-.|...|+.+.||..|.+|++..-++ .|.|.++..
T Consensus 476 ~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK 555 (733)
T KOG0650|consen 476 RLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK 555 (733)
T ss_pred hhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccc
Confidence 0 00 0112235777899999999999999887764 677776654
Q ss_pred CCCC-Cceeeee------eeec-------------------------cCCccccEEEEEEccCCCEEEEeeCCCcEEEEe
Q 023500 124 TDSD-NWHCVQT------ISES-------------------------NNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWG 171 (281)
Q Consensus 124 ~~~~-~~~~~~~------~~~~-------------------------~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~ 171 (281)
.... +++.... +... .......+..++.+|.|+.|+.|+.|+.+..||
T Consensus 556 ~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfD 635 (733)
T KOG0650|consen 556 RKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFD 635 (733)
T ss_pred ccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEE
Confidence 3211 1100000 0000 000123345555566666666666666665555
Q ss_pred CCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEeccc-CCCcCCccceeeeeeccCCCCC
Q 023500 172 ADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESK-DDLIDGPSYKMLLKKEKAHDMD 249 (281)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~ 249 (281)
+++.. ..++. ...|...++++++++.. ++++++.|+.+.+|.-.- .++...+.. .-++...+|...
T Consensus 636 ldlss----kPyk~-------lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpli-VPlK~L~gH~~~ 703 (733)
T KOG0650|consen 636 LDLSS----KPYKT-------LRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLI-VPLKRLRGHEKT 703 (733)
T ss_pred cccCc----chhHH-------hhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCce-EeeeeccCceee
Confidence 54321 00000 12366777888888764 788888889999985432 122222221 123445667555
Q ss_pred ----eeEEEEcCCCCeeEEEeCCCCeEEEE
Q 023500 250 ----VNSVQWSPGERRLLASASDDGMIKIW 275 (281)
Q Consensus 250 ----v~~~~~~~~~~~~~~s~~~Dg~v~iw 275 (281)
|.++.|+|..+++| +++.||+||+|
T Consensus 704 ~~~gVLd~~wHP~qpWLf-sAGAd~tirlf 732 (733)
T KOG0650|consen 704 NDLGVLDTIWHPRQPWLF-SAGADGTIRLF 732 (733)
T ss_pred cccceEeecccCCCceEE-ecCCCceEEee
Confidence 89999999988754 88889999998
No 129
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.89 E-value=5.3e-22 Score=159.90 Aligned_cols=243 Identities=21% Similarity=0.333 Sum_probs=183.3
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCC-ceeeeeeecC--CCCCeeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGG-DYECVATLEG--HENEVKSVSWNASGTLLATCGRDKSVWIWEVMP 78 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~-~~~~~~~~~~--h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~ 78 (281)
|-.-|-++.++...+++.||+ -|-|+|||.... ...++..+.. -...|.++.+.|||+-|++||.--++-+||+..
T Consensus 418 HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAa 496 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAA 496 (705)
T ss_pred cCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccC
Confidence 555667778998889999987 466999997532 2233444432 345788999999999999999999999999975
Q ss_pred CCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEE
Q 023500 79 GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158 (281)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 158 (281)
... .....+......+..++.+|+.++.+++..||.|.|||+.... .++.+ .||+..+.|++.+++|..|
T Consensus 497 pTp-rikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~-----~Vrqf----qGhtDGascIdis~dGtkl 566 (705)
T KOG0639|consen 497 PTP-RIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT-----LVRQF----QGHTDGASCIDISKDGTKL 566 (705)
T ss_pred CCc-chhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce-----eeecc----cCCCCCceeEEecCCCcee
Confidence 432 1223344455678899999999999999999999999886532 23334 4899999999999999999
Q ss_pred EEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce-eeecCCCCcEEEEecccCCCcCCccce
Q 023500 159 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYK 237 (281)
Q Consensus 159 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~ 237 (281)
-||+.|.++|.||.+.+....... ....|+++...|.+. ++.|..++.+.+....+.
T Consensus 567 WTGGlDntvRcWDlregrqlqqhd-------------F~SQIfSLg~cP~~dWlavGMens~vevlh~skp--------- 624 (705)
T KOG0639|consen 567 WTGGLDNTVRCWDLREGRQLQQHD-------------FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP--------- 624 (705)
T ss_pred ecCCCccceeehhhhhhhhhhhhh-------------hhhhheecccCCCccceeeecccCcEEEEecCCc---------
Confidence 999999999999987543221111 245678888888775 666777888777755431
Q ss_pred eeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 238 MLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 238 ~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
.......|++-|.++.|.+-|++ +++.+.|+.+..|....
T Consensus 625 -~kyqlhlheScVLSlKFa~cGkw-fvStGkDnlLnawrtPy 664 (705)
T KOG0639|consen 625 -EKYQLHLHESCVLSLKFAYCGKW-FVSTGKDNLLNAWRTPY 664 (705)
T ss_pred -cceeecccccEEEEEEecccCce-eeecCchhhhhhccCcc
Confidence 12334568999999999999875 67889999999998653
No 130
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=9.1e-20 Score=139.16 Aligned_cols=240 Identities=16% Similarity=0.253 Sum_probs=169.3
Q ss_pred cceeEEEEcCCCCEEEEeeC--CCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 4 RTVRSCAWSPSGKLLATASF--DATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~--d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
..|..+.|......++.++. |.+|++-+..+++ .+..+.||...|++++.+|-+..++|+|.|++|++||++..+
T Consensus 57 yG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNk--ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~- 133 (311)
T KOG1446|consen 57 YGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNK--YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKK- 133 (311)
T ss_pred ccccEEEEecCCceEEEccCCCCCceEEEEeecCc--eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCC-
Confidence 45677788777776666665 8899999888775 478899999999999999999999999999999999997443
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
|...+. ...-..++|.|+|-++|++.....|+++|+..-+.+++.. +.. ..+.....+.+.|+|+|++++.+
T Consensus 134 --cqg~l~--~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~t---f~i-~~~~~~ew~~l~FS~dGK~iLls 205 (311)
T KOG1446|consen 134 --CQGLLN--LSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTT---FSI-TDNDEAEWTDLEFSPDGKSILLS 205 (311)
T ss_pred --CceEEe--cCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCcee---Ecc-CCCCccceeeeEEcCCCCEEEEE
Confidence 222221 1223467899999999999988899999988765554422 211 11335678899999999999999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecc--cCcceEEEEeCCCce-eeecCCCCcEEEEecccCCCcCCcccee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGY--HDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKM 238 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 238 (281)
...+.+.+.|.=.+.. ..++... ......+.+++|++. +++|+.|+++.+|....+ . .
T Consensus 206 T~~s~~~~lDAf~G~~-----------~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg-----~---~ 266 (311)
T KOG1446|consen 206 TNASFIYLLDAFDGTV-----------KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETG-----K---K 266 (311)
T ss_pred eCCCcEEEEEccCCcE-----------eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCC-----c---E
Confidence 9999999987532221 1111111 111225667888875 667778899999966432 1 1
Q ss_pred eeeeccC-CCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 239 LLKKEKA-HDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 239 ~~~~~~~-h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
.....+ +..++.++.|+|.- .+++|+ +..+.+|=.
T Consensus 267 -v~~~~~~~~~~~~~~~fnP~~-~mf~sa--~s~l~fw~p 302 (311)
T KOG1446|consen 267 -VAVLRGPNGGPVSCVRFNPRY-AMFVSA--SSNLVFWLP 302 (311)
T ss_pred -eeEecCCCCCCccccccCCce-eeeeec--CceEEEEec
Confidence 122222 77889999999953 345444 667888854
No 131
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.89 E-value=2.9e-21 Score=151.70 Aligned_cols=162 Identities=24% Similarity=0.405 Sum_probs=134.8
Q ss_pred cceeEEEEcCCCC-EEEEeeCCCcEEEEecCCC-------ceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEE
Q 023500 4 RTVRSCAWSPSGK-LLATASFDATTCIWEDVGG-------DYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWE 75 (281)
Q Consensus 4 ~~i~~~~~~~~~~-~l~tg~~d~~i~lw~~~~~-------~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~ 75 (281)
.+|..+.|.+... .+|||+.|..|+||..+.+ +.+.+..+..|+..|+++.|+|+|..|+||++++.|.+|.
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk 93 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK 93 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence 5788999999776 9999999999999975432 3445677889999999999999999999999999999998
Q ss_pred ecC-------------CCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCc
Q 023500 76 VMP-------------GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGH 142 (281)
Q Consensus 76 ~~~-------------~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h 142 (281)
... .+.+...+++.+|...+..++|+|+++.+++++-|+++++||+.... +......|
T Consensus 94 ~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~---------l~~~~~dh 164 (434)
T KOG1009|consen 94 QGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ---------LLAILDDH 164 (434)
T ss_pred ecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce---------eEeecccc
Confidence 651 12244567788999999999999999999999999999999987643 22334578
Q ss_pred cccEEEEEEccCCCEEEEeeCCCcEEEEeCCc
Q 023500 143 SSTIWALSFNAKGDKLVSCSDDLTIKIWGADI 174 (281)
Q Consensus 143 ~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~ 174 (281)
...|+.++|.|.++++++-+.|...+.++...
T Consensus 165 ~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 165 EHYVQGVAWDPLNQYVASKSSDRHPEGFSAKL 196 (434)
T ss_pred ccccceeecchhhhhhhhhccCcccceeeeee
Confidence 88999999999999999988888777776543
No 132
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=1e-20 Score=143.43 Aligned_cols=243 Identities=16% Similarity=0.246 Sum_probs=167.3
Q ss_pred CCccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCC--EEEEecCCCcEEEEEecC
Q 023500 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT--LLATCGRDKSVWIWEVMP 78 (281)
Q Consensus 1 ~h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~l~s~~~d~~v~~w~~~~ 78 (281)
.|.++|.+++|+.||..+++|+-|+.+++||+..++ +..+..|.++|.++.|-+... .|+|||.|++|+.||.+.
T Consensus 70 ~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q---~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~ 146 (347)
T KOG0647|consen 70 SHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ---VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS 146 (347)
T ss_pred ccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC---eeeeeecccceeEEEEecCCCcceeEecccccceeecccCC
Confidence 478999999999999999999999999999998875 345567999999999977655 799999999999999986
Q ss_pred CCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEE
Q 023500 79 GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158 (281)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 158 (281)
..+. .++.- .+.+.+...- ..+++.+..+..|.++.++.....- + .... .-.-++.|++..++.+..
T Consensus 147 ~~pv---~t~~L-PeRvYa~Dv~--~pm~vVata~r~i~vynL~n~~te~-k---~~~S---pLk~Q~R~va~f~d~~~~ 213 (347)
T KOG0647|consen 147 SNPV---ATLQL-PERVYAADVL--YPMAVVATAERHIAVYNLENPPTEF-K---RIES---PLKWQTRCVACFQDKDGF 213 (347)
T ss_pred CCee---eeeec-cceeeehhcc--CceeEEEecCCcEEEEEcCCCcchh-h---hhcC---cccceeeEEEEEecCCce
Confidence 6542 22221 2234443221 2367788889999999886653211 1 1111 113456788888888888
Q ss_pred EEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC-ceeeecCCCCcEEEEecccCCCcCCccce
Q 023500 159 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE-GIIASGAADDSVQFFVESKDDLIDGPSYK 237 (281)
Q Consensus 159 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 237 (281)
+.|+-+|.+.+..++...+...-.+...|......+ .-..|.+++|+|. |.+++.++||+..+|+... +
T Consensus 214 alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~-~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkda---------r 283 (347)
T KOG0647|consen 214 ALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVND-DVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDA---------R 283 (347)
T ss_pred EeeeecceEEEEecCCCCccCceeEEEeccCCCCCC-ceEEecceEeecccceEEEecCCceEEEecchh---------h
Confidence 999999999998766432211101111111000000 1245778899985 6899999999999996532 1
Q ss_pred eeeeeccCCCCCeeEEEEcCCCCeeEEEeCCC
Q 023500 238 MLLKKEKAHDMDVNSVQWSPGERRLLASASDD 269 (281)
Q Consensus 238 ~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~D 269 (281)
..++....|..+|+++.|+.+|..+....+.|
T Consensus 284 ~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 284 TKLKTSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred hhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence 22344467899999999999887543345555
No 133
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=8.3e-21 Score=151.35 Aligned_cols=255 Identities=15% Similarity=0.264 Sum_probs=177.9
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCC-EEEEecCCCcEEEEEecCCCe
Q 023500 3 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT-LLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~v~~w~~~~~~~ 81 (281)
...|+++.|+|..++|++++.|+.++||.+.+..-..++.+.--..+|.+..|.|+|. +++++|.-.-+..||+...+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 3679999999999999999999999999876544344555554568999999999998 899999999999999864321
Q ss_pred eE----------EeE-----------eec--------------------CCccceeEEEecCCCCeEEEEecCCeEEEEe
Q 023500 82 FE----------CVS-----------VLQ--------------------GHAQDVKMVQWHPTMDVLFSCSYDNTIKVWW 120 (281)
Q Consensus 82 ~~----------~~~-----------~~~--------------------~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~ 120 (281)
.+ .+. .+. .-.+.|..++|+.++..|++++.+|.|.+|+
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~n 372 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWN 372 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEe
Confidence 10 000 011 1234677888999999999999999999998
Q ss_pred CCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcce
Q 023500 121 AEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTI 200 (281)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 200 (281)
++.. .++.++......|. ++++.++++.+||+|+..|-|.|||.+..-.. .. -+++..+.. ....|
T Consensus 373 l~~~-----~~~~rf~D~G~v~g---ts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s--~~---PkPik~~dN-Ltt~I 438 (514)
T KOG2055|consen 373 LRQN-----SCLHRFVDDGSVHG---TSLCISLNGSYLATGSDSGIVNIYDGNSCFAS--TN---PKPIKTVDN-LTTAI 438 (514)
T ss_pred cCCc-----ceEEEEeecCccce---eeeeecCCCceEEeccCcceEEEeccchhhcc--CC---CCchhhhhh-hheee
Confidence 8765 35555544332232 56788899999999999999999985421110 00 022222211 24568
Q ss_pred EEEEeCCCceeeecC---CCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 201 FSVHWSREGIIASGA---ADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 201 ~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
.+++|+++..+++.+ .+..+++..+....++..-+ ....--..|+|++|+|.+. ++|.|.++|.|.+|.+
T Consensus 439 tsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP------~~n~~vg~vtc~aFSP~sG-~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 439 TSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFP------TSNTKVGHVTCMAFSPNSG-YLAVGNEAGRVHLFKL 511 (514)
T ss_pred eeeeeCcchhhhhhhhhccccceEEEeccceeeeccCC------CCCCcccceEEEEecCCCc-eEEeecCCCceeeEee
Confidence 899999988654433 35577887665432222111 1112223589999999775 6899999999999987
Q ss_pred c
Q 023500 278 A 278 (281)
Q Consensus 278 ~ 278 (281)
.
T Consensus 512 ~ 512 (514)
T KOG2055|consen 512 H 512 (514)
T ss_pred c
Confidence 4
No 134
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.7e-20 Score=143.12 Aligned_cols=250 Identities=18% Similarity=0.281 Sum_probs=164.0
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEe
Q 023500 6 VRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECV 85 (281)
Q Consensus 6 i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~ 85 (281)
..|+.|++-|.+||.|+.||.+.|||..+.. ....+.+|..+|.+++||++|++|+|+|.|..|.+||+..+....
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~--iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~-- 101 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR--IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLK-- 101 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc--hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCcee--
Confidence 6789999999999999999999999987754 456788999999999999999999999999999999998776432
Q ss_pred EeecCCccceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCc-cccEEEEEEccCCCEEEEeeC
Q 023500 86 SVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGH-SSTIWALSFNAKGDKLVSCSD 163 (281)
Q Consensus 86 ~~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~ 163 (281)
.+. -.+.|..+.|||... ..+++=.+..-.+-++... .+.+.... ..+. .....+..|.+.|+++++|..
T Consensus 102 -rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~----~h~~Lp~d--~d~dln~sas~~~fdr~g~yIitGts 173 (405)
T KOG1273|consen 102 -RIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP----KHSVLPKD--DDGDLNSSASHGVFDRRGKYIITGTS 173 (405)
T ss_pred -EEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCC----ceeeccCC--CccccccccccccccCCCCEEEEecC
Confidence 222 256799999999755 3333333333333333321 11111110 0111 111223358889999999999
Q ss_pred CCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcC--Cccceeee
Q 023500 164 DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLID--GPSYKMLL 240 (281)
Q Consensus 164 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~--~~~~~~~~ 240 (281)
.|.+.++|....+.. ..+... ....|.++.++.+| .++.-++|+.+|.|..+..+... +..-....
T Consensus 174 KGkllv~~a~t~e~v---------as~rit--s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K 242 (405)
T KOG1273|consen 174 KGKLLVYDAETLECV---------ASFRIT--SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHK 242 (405)
T ss_pred cceEEEEecchheee---------eeeeec--hheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHH
Confidence 999999987643221 111111 13567778888766 57778899999999776322110 00000000
Q ss_pred eeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 241 ~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
.......-.-+++.|+.+|.+++++.+.-..++||.-.
T Consensus 243 ~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~ 280 (405)
T KOG1273|consen 243 LQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKS 280 (405)
T ss_pred HHHHHhhhhhhheeecCCccEEEeccccceeEEEEecC
Confidence 01122233456788998887766655556679999854
No 135
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.88 E-value=9.1e-20 Score=147.08 Aligned_cols=235 Identities=20% Similarity=0.394 Sum_probs=175.1
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCC--Ce
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG--NE 81 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~--~~ 81 (281)
+.|.|+.|.++|+.+ ||..+|.|.||+..+... .+...+|++.|.++..-.+|.+|- |+.|+.|..||-.-. ++
T Consensus 247 k~Vl~v~F~engdvi-TgDS~G~i~Iw~~~~~~~--~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~ 322 (626)
T KOG2106|consen 247 KFVLCVTFLENGDVI-TGDSGGNILIWSKGTNRI--SKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRE 322 (626)
T ss_pred eEEEEEEEcCCCCEE-eecCCceEEEEeCCCceE--EeEeeecCCceEEEEEecCccEee-cCccceEEecccccccccc
Confidence 569999999999976 999999999999866543 333348999999999888887665 999999999983210 00
Q ss_pred e------EEe-----------------------------EeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCC
Q 023500 82 F------ECV-----------------------------SVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDS 126 (281)
Q Consensus 82 ~------~~~-----------------------------~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~ 126 (281)
. ..+ .+..+|.+....++.+|+.+++++++.|+.+++|+ +..
T Consensus 323 ~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~~k-- 399 (626)
T KOG2106|consen 323 TELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-DHK-- 399 (626)
T ss_pred ccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-CCc--
Confidence 0 000 12347888888999999999999999999999996 111
Q ss_pred CCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeC
Q 023500 127 DNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS 206 (281)
Q Consensus 127 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 206 (281)
-.| .. .-..++.|++|+|.+ .++.|...|..-+.|.+... ..+... .+.++.++.++
T Consensus 400 ~~w------t~---~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~------------lv~~~~-d~~~ls~v~ys 456 (626)
T KOG2106|consen 400 LEW------TK---IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQD------------LVTIHT-DNEQLSVVRYS 456 (626)
T ss_pred eeE------EE---EecCceeEeeccCcc-eEEEeeccceEEEEecccce------------eEEEEe-cCCceEEEEEc
Confidence 111 11 113567899999999 99999999999999876421 112222 27889999999
Q ss_pred CCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 207 REG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 207 ~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
|+| ++|.|+.|+.+.+|.+..+.. .+.. -.+.|..+|+.+.|+++++ ++.+-+.|-.|..|+
T Consensus 457 p~G~~lAvgs~d~~iyiy~Vs~~g~----~y~r---~~k~~gs~ithLDwS~Ds~-~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 457 PDGAFLAVGSHDNHIYIYRVSANGR----KYSR---VGKCSGSPITHLDWSSDSQ-FLVSNSGDYEILYWK 519 (626)
T ss_pred CCCCEEEEecCCCeEEEEEECCCCc----EEEE---eeeecCceeEEeeecCCCc-eEEeccCceEEEEEc
Confidence 987 688899999999997765322 1111 1233458999999999886 577999999999994
No 136
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=5.9e-22 Score=173.20 Aligned_cols=245 Identities=22% Similarity=0.380 Sum_probs=182.0
Q ss_pred eeEEEEcCCCCE----EEEeeCCCcEEEEecCC----CceeeeeeecCCCCCeeEEEEcCC-CCEEEEecCCCcEEEEEe
Q 023500 6 VRSCAWSPSGKL----LATASFDATTCIWEDVG----GDYECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEV 76 (281)
Q Consensus 6 i~~~~~~~~~~~----l~tg~~d~~i~lw~~~~----~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~~w~~ 76 (281)
-+.++|.+.|.. ||.|.+||+|.+||... .+...+.++.-|++.|..+.|++. +++|++|+.||.|.+||+
T Consensus 67 F~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDl 146 (1049)
T KOG0307|consen 67 FNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDL 146 (1049)
T ss_pred ceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEecc
Confidence 357899998765 89999999999999643 344557788889999999999996 559999999999999999
Q ss_pred cCCCeeEEeEee--cCCccceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEcc
Q 023500 77 MPGNEFECVSVL--QGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA 153 (281)
Q Consensus 77 ~~~~~~~~~~~~--~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 153 (281)
...+.. ... ....+.|.+++|+..-+ .|++++.+|.+.|||+.... .+..+... +.+..+..+.|+|
T Consensus 147 nn~~tP---~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~-----pii~ls~~--~~~~~~S~l~WhP 216 (1049)
T KOG0307|consen 147 NKPETP---FTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKK-----PIIKLSDT--PGRMHCSVLAWHP 216 (1049)
T ss_pred CCcCCC---CCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCC-----cccccccC--CCccceeeeeeCC
Confidence 764321 122 22457899999998755 68899999999999987642 23333221 2234578999999
Q ss_pred CC-CEEEEeeCC---CcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC--ceeeecCCCCcEEEEeccc
Q 023500 154 KG-DKLVSCSDD---LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE--GIIASGAADDSVQFFVESK 227 (281)
Q Consensus 154 ~~-~~l~s~~~d---~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~d~~~~~~~~~~ 227 (281)
+. +.+++++.| ..|.+||++... .++..+ ..|...|.+++|.+. .++++++.|+.+..|..+.
T Consensus 217 ~~aTql~~As~dd~~PviqlWDlR~as----------sP~k~~-~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t 285 (1049)
T KOG0307|consen 217 DHATQLLVASGDDSAPVIQLWDLRFAS----------SPLKIL-EGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT 285 (1049)
T ss_pred CCceeeeeecCCCCCceeEeecccccC----------Cchhhh-cccccceeeeccCCCCchhhhcccCCCCeeEecCCC
Confidence 86 356666544 489999876321 111122 248889999999974 4789999999999996654
Q ss_pred CCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 228 DDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
+ +.+........++..+.|+|..+.+|+.++-||.|.|+.+..+
T Consensus 286 g---------Evl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 286 G---------EVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred c---------eEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 2 2334444566789999999999888999999999999987653
No 137
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.88 E-value=1.9e-20 Score=156.03 Aligned_cols=254 Identities=21% Similarity=0.400 Sum_probs=191.2
Q ss_pred EEEEcC-CCC-EEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCC---CEEEEecCCCcEEEEEecCCC-e
Q 023500 8 SCAWSP-SGK-LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG---TLLATCGRDKSVWIWEVMPGN-E 81 (281)
Q Consensus 8 ~~~~~~-~~~-~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~---~~l~s~~~d~~v~~w~~~~~~-~ 81 (281)
|+++.| .+. ++|.|+.+..+.|+.....++..+..+.||.+-|.+++|+.-+ .+|+|+|+|..||+|.+.... +
T Consensus 150 cL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~ 229 (764)
T KOG1063|consen 150 CLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDE 229 (764)
T ss_pred HHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCc
Confidence 455556 333 5677888889999977767788889999999999999997633 378999999999999986433 0
Q ss_pred e-----------------EEe----------EeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeee
Q 023500 82 F-----------------ECV----------SVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQT 134 (281)
Q Consensus 82 ~-----------------~~~----------~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~ 134 (281)
. ... ..+.||.+-|.++.|+|.+..|+++|.|.++-+|..++ ..+.|....+
T Consensus 230 ~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~-~tGiWv~~vR 308 (764)
T KOG1063|consen 230 DSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDE-NTGIWVDVVR 308 (764)
T ss_pred cccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCC-ccceEEEEEE
Confidence 0 111 12459999999999999999999999999999997654 3345666665
Q ss_pred eeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeee
Q 023500 135 ISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIAS 213 (281)
Q Consensus 135 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~ 213 (281)
+-... +.....+...|+|++..+++-+..|-+++|..+... .|.+.... ..|...|..+.|+|.| ++++
T Consensus 309 lGe~g-g~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~--------~w~~~~~i-SGH~~~V~dv~W~psGeflLs 378 (764)
T KOG1063|consen 309 LGEVG-GSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKT--------FWTQEPVI-SGHVDGVKDVDWDPSGEFLLS 378 (764)
T ss_pred eeccc-ccccceeeEEEcCCCCEEEEecccCcEEEEeccCcc--------ceeecccc-ccccccceeeeecCCCCEEEE
Confidence 54332 334567899999999999999999999999632111 12333233 3588899999999976 6889
Q ss_pred cCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 214 GAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 214 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
.+.|.+.|+|..-.. ..-...+.+.+.|..+++|++|-+. +..|++|++...+|+|+..
T Consensus 379 vs~DQTTRlFa~wg~-----q~~wHEiaRPQiHGyDl~c~~~vn~-~~~FVSgAdEKVlRvF~aP 437 (764)
T KOG1063|consen 379 VSLDQTTRLFARWGR-----QQEWHEIARPQIHGYDLTCLSFVNE-DLQFVSGADEKVLRVFEAP 437 (764)
T ss_pred eccccceeeeccccc-----ccceeeecccccccccceeeehccC-CceeeecccceeeeeecCc
Confidence 999999999954311 1113456677889999999999884 3457899999999999865
No 138
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=2.6e-21 Score=157.66 Aligned_cols=256 Identities=23% Similarity=0.322 Sum_probs=171.6
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEec---C---CCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEE
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWED---V---GGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWE 75 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~---~---~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~ 75 (281)
|.+.|+.++|+|....|++++.||.|.+|.. . ...++++.++.+|.++|.|+...+.+..+++||.||+|+.|+
T Consensus 293 ~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~ 372 (577)
T KOG0642|consen 293 HDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWN 372 (577)
T ss_pred chhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeec
Confidence 6788999999999999999999999999987 2 245678899999999999999999999999999999999998
Q ss_pred ecCCCe----e---EEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEE
Q 023500 76 VMPGNE----F---ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWA 148 (281)
Q Consensus 76 ~~~~~~----~---~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 148 (281)
+..... . .....+.||.+++..+.+|+..+.|+++|.||++++|....... | ++.... . .+....
T Consensus 373 ~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~----~--~f~~~~-e-~g~Pls 444 (577)
T KOG0642|consen 373 LPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP----C--TFGEPK-E-HGYPLS 444 (577)
T ss_pred cCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc----c--ccCCcc-c-cCCcce
Confidence 763211 1 22356789999999999999999999999999999997654421 1 111111 1 133445
Q ss_pred EEEccCC-CEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEeccc
Q 023500 149 LSFNAKG-DKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESK 227 (281)
Q Consensus 149 ~~~~~~~-~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~ 227 (281)
+++-... ..+++...-+.-.+++.++.......+-....... ........++.....+.+++..|+.+++++...
T Consensus 445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~----~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~ 520 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPR----RYPQINKVVSHPTADITFTAHEDRSIRFFDNKT 520 (577)
T ss_pred EeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCccc----ccCccceEEecCCCCeeEecccCCceecccccc
Confidence 6654332 22222222222223332221100000000000000 001112223333346788888999999997655
Q ss_pred CCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 228 DDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
+.+ ......|...++++++.|++. +|++++.|+.+++|.+..
T Consensus 521 ~~~---------l~s~~a~~~svtslai~~ng~-~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 521 GKI---------LHSMVAHKDSVTSLAIDPNGP-YLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred ccc---------chheeeccceecceeecCCCc-eEEeecCCceeehhhccc
Confidence 432 223346788899999999886 578999999999999754
No 139
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.87 E-value=7.6e-20 Score=147.53 Aligned_cols=252 Identities=21% Similarity=0.305 Sum_probs=173.7
Q ss_pred CCccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC
Q 023500 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 1 ~h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
.|.+..+.++.+|+.+.++|++.|+.++||+. .+.+..+. -..++.|+.|+|.| .++.|...|.-.+.|.....
T Consensus 366 gh~delwgla~hps~~q~~T~gqdk~v~lW~~--~k~~wt~~---~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~ 439 (626)
T KOG2106|consen 366 GHGDELWGLATHPSKNQLLTCGQDKHVRLWND--HKLEWTKI---IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQD 439 (626)
T ss_pred ecccceeeEEcCCChhheeeccCcceEEEccC--CceeEEEE---ecCceeEeeccCcc-eEEEeeccceEEEEecccce
Confidence 47888999999999999999999999999983 33332332 34788999999999 99999999998888876422
Q ss_pred eeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
.+..-.. .+++++++|+|++.+||.||.|+.|++|.+..... ...... +.|.++++.++|++|+++|.+
T Consensus 440 ---lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~----~y~r~~---k~~gs~ithLDwS~Ds~~~~~ 508 (626)
T KOG2106|consen 440 ---LVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR----KYSRVG---KCSGSPITHLDWSSDSQFLVS 508 (626)
T ss_pred ---eEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc----EEEEee---eecCceeEEeeecCCCceEEe
Confidence 1222222 77899999999999999999999999998876532 111121 123378999999999999999
Q ss_pred eeCCCcEEEEeCCccccccC-CCCcccce-eEEe-----ecccCcceEEEEeCCC-ceeeecCCCCcEEEEecccCCCcC
Q 023500 161 CSDDLTIKIWGADITRMQSG-DGYASWRH-LCTI-----SGYHDRTIFSVHWSRE-GIIASGAADDSVQFFVESKDDLID 232 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~~~~~~-~~~~~~~~-~~~~-----~~~~~~~v~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~ 232 (281)
-+-|-.|.+|.....+.... ... +|.. .|.+ -+.+...+..++-+.+ .++++|...+.+++|...=.
T Consensus 509 ~S~d~eiLyW~~~~~~~~ts~kDv-kW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~---- 583 (626)
T KOG2106|consen 509 NSGDYEILYWKPSECKQITSVKDV-KWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCS---- 583 (626)
T ss_pred ccCceEEEEEccccCcccceecce-eeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccC----
Confidence 99999999994432211111 111 1111 1110 0112222233333333 36777778899999954211
Q ss_pred CccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 233 GPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 233 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
.......+..+|++.|++++|.-+... +++.+.|..|..|++
T Consensus 584 --s~rA~~he~~ghs~~vt~V~Fl~~d~~-li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 584 --SPRAPSHEYGGHSSHVTNVAFLCKDSH-LISTGKDTSIMQWRL 625 (626)
T ss_pred --CCcccceeeccccceeEEEEEeeCCce-EEecCCCceEEEEEe
Confidence 111223345689999999999987764 556559999999986
No 140
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.87 E-value=2.9e-20 Score=148.10 Aligned_cols=256 Identities=18% Similarity=0.290 Sum_probs=172.2
Q ss_pred CCccceeEEEEcCCC--CEEEEeeCCCcEEEEecC--CCceeeeeeecCCCCCeeEEEEcC-CCCEEEEecCCCcEEEEE
Q 023500 1 MHTRTVRSCAWSPSG--KLLATASFDATTCIWEDV--GGDYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWE 75 (281)
Q Consensus 1 ~h~~~i~~~~~~~~~--~~l~tg~~d~~i~lw~~~--~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~~w~ 75 (281)
+|.+.|++++|+|.- +++|.|..-|+|=+||.. ..+..-+..+.+|..+|.++.|+| +..++++.|.||+|++=|
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D 263 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQD 263 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeee
Confidence 467889999999964 589999999999999984 233344677889999999999999 567899999999999998
Q ss_pred ecCCCe-----------eE-----------E--------------------eEeecCCccceeEEEecCCCC-eEEEEec
Q 023500 76 VMPGNE-----------FE-----------C--------------------VSVLQGHAQDVKMVQWHPTMD-VLFSCSY 112 (281)
Q Consensus 76 ~~~~~~-----------~~-----------~--------------------~~~~~~~~~~v~~v~~~p~~~-~l~s~s~ 112 (281)
+..... .- . ...+.-|...|+.++++|... +++|+|.
T Consensus 264 ~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~ 343 (498)
T KOG4328|consen 264 FEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASL 343 (498)
T ss_pred ecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeeccc
Confidence 853110 00 0 011234777999999999755 6899999
Q ss_pred CCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEe
Q 023500 113 DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTI 192 (281)
Q Consensus 113 d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 192 (281)
|.+++|||+........ ..+ ....|+..|.+..|||++-.|++-+.|..|++||..-. .... .+.+.+
T Consensus 344 D~T~kIWD~R~l~~K~s---p~l--st~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~--sa~~-----~p~~~I 411 (498)
T KOG4328|consen 344 DQTAKIWDLRQLRGKAS---PFL--STLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCI--SAKD-----EPLGTI 411 (498)
T ss_pred CcceeeeehhhhcCCCC---cce--ecccccceeeeeEEcCCCCceEeeccCCceEEeecccc--cccC-----Ccccee
Confidence 99999999876432110 111 12369999999999999878999999999999987310 0011 111111
Q ss_pred ec--ccC--cceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeee-ccCCCCCeeE-EEEcCCCCeeEEE
Q 023500 193 SG--YHD--RTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKK-EKAHDMDVNS-VQWSPGERRLLAS 265 (281)
Q Consensus 193 ~~--~~~--~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~-~~~~~~~~~~~~s 265 (281)
.. .+. -+.+...|.|+. +++.|-.-..+-+++.+.+ +.+.+ .......|.+ .+|+|-+..+++.
T Consensus 412 ~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~---------q~v~el~~P~~~tI~~vn~~HP~~~~~~aG 482 (498)
T KOG4328|consen 412 PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG---------QMVCELHDPESSTIPSVNEFHPMRDTLAAG 482 (498)
T ss_pred eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCC---------EEeeeccCccccccccceeecccccceecc
Confidence 11 111 233455788754 5666666667777755432 11111 1112223544 4799976545655
Q ss_pred eCCCCeEEEEEc
Q 023500 266 ASDDGMIKIWEL 277 (281)
Q Consensus 266 ~~~Dg~v~iw~~ 277 (281)
++.-|.|.||--
T Consensus 483 ~~s~Gki~vft~ 494 (498)
T KOG4328|consen 483 GNSSGKIYVFTN 494 (498)
T ss_pred CCccceEEEEec
Confidence 666788888853
No 141
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=4.8e-19 Score=147.38 Aligned_cols=248 Identities=16% Similarity=0.290 Sum_probs=179.5
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCee
Q 023500 3 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF 82 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~ 82 (281)
++.|-.++|++.+++ .+.+.+|.|.-||+.+.+ ....++...+.|++++.+|.+..++.|++||.+..+++.++. .
T Consensus 69 drsIE~L~W~e~~RL-FS~g~sg~i~EwDl~~lk--~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~-I 144 (691)
T KOG2048|consen 69 DRSIESLAWAEGGRL-FSSGLSGSITEWDLHTLK--QKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDK-I 144 (691)
T ss_pred CCceeeEEEccCCeE-EeecCCceEEEEecccCc--eeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCce-E
Confidence 367889999965555 488889999999998775 466777788999999999999999999999977777765443 2
Q ss_pred EEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee
Q 023500 83 ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS 162 (281)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 162 (281)
+..+.+....+.+-+++|+|++..+++|+.||.|++||+........ ....+-...++-+--||++.|-.++ .+++|+
T Consensus 145 ~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~-~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgD 222 (691)
T KOG2048|consen 145 TYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHI-ITMQLDRLSKREPTIVWSVLFLRDS-TIASGD 222 (691)
T ss_pred EEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEE-eeecccccccCCceEEEEEEEeecC-cEEEec
Confidence 33455666678999999999999999999999999999876542210 0001111112234567888887554 799999
Q ss_pred CCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC-ceeeecCCCCcEEEEecccCCCcCCccceeeee
Q 023500 163 DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLK 241 (281)
Q Consensus 163 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 241 (281)
..|+|++||.+.+... .. ...|+..|.++.-.++ ..+.+++-|+.+--|....... . .....
T Consensus 223 S~G~V~FWd~~~gTLi-----------qS-~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~----~-wv~~~ 285 (691)
T KOG2048|consen 223 SAGTVTFWDSIFGTLI-----------QS-HSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS----E-WVINS 285 (691)
T ss_pred CCceEEEEcccCcchh-----------hh-hhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc----c-eeeec
Confidence 9999999997644221 11 1237788999988876 6788888888776664433211 1 22233
Q ss_pred eccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 242 KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 242 ~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
....|...|++++..+. .+.+|+.|..|.+-.
T Consensus 286 ~r~~h~hdvrs~av~~~---~l~sgG~d~~l~i~~ 317 (691)
T KOG2048|consen 286 RRDLHAHDVRSMAVIEN---ALISGGRDFTLAICS 317 (691)
T ss_pred cccCCcccceeeeeecc---eEEecceeeEEEEcc
Confidence 45678889999998764 577999999987644
No 142
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=5e-20 Score=141.29 Aligned_cols=266 Identities=21% Similarity=0.450 Sum_probs=176.6
Q ss_pred CccceeEEEEcCC-----CCEEEEeeCCCcEEEEecCCCc-eeeeeee--cCCCCCeeEEEEcCC----CCEEEEecCCC
Q 023500 2 HTRTVRSCAWSPS-----GKLLATASFDATTCIWEDVGGD-YECVATL--EGHENEVKSVSWNAS----GTLLATCGRDK 69 (281)
Q Consensus 2 h~~~i~~~~~~~~-----~~~l~tg~~d~~i~lw~~~~~~-~~~~~~~--~~h~~~v~~v~~~~~----~~~l~s~~~d~ 69 (281)
|+.+|..++|++- -+.+||.+. +.+.||+....- ...+..+ ..|++..+.++|..+ ..++|.||.-|
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~G 115 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLG 115 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeeccee
Confidence 6788999999962 246777664 457788754322 1122222 247888999999764 34789999999
Q ss_pred cEEEEEecCCCeeEEeEeecCCccceeEEEecCCC-CeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEE
Q 023500 70 SVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTM-DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWA 148 (281)
Q Consensus 70 ~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~-~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 148 (281)
.|++.|+... ++...+.+|...|+.++++|+. ++++++|.|.+|++|++++. .|+.- .-...+|+..|.+
T Consensus 116 vIrVid~~~~---~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~-----~Cv~V-fGG~egHrdeVLS 186 (385)
T KOG1034|consen 116 VIRVIDVVSG---QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD-----VCVAV-FGGVEGHRDEVLS 186 (385)
T ss_pred EEEEEecchh---hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC-----eEEEE-ecccccccCcEEE
Confidence 9999998654 3567789999999999999975 68999999999999988764 24432 2344689999999
Q ss_pred EEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCc-------ccc----eeEEe-----ecccCcceEEEEeCCCceee
Q 023500 149 LSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYA-------SWR----HLCTI-----SGYHDRTIFSVHWSREGIIA 212 (281)
Q Consensus 149 ~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~-------~~~----~~~~~-----~~~~~~~v~~~~~~~~~~~~ 212 (281)
++|+++++++++|+.|..+++|++.........+.. +.+ +.+.+ ...|...|.|+.|-. .+++
T Consensus 187 vD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g-d~il 265 (385)
T KOG1034|consen 187 VDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG-DFIL 265 (385)
T ss_pred EEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh-hhee
Confidence 999999999999999999999988743322111100 000 11111 122444555555544 3566
Q ss_pred ecCCCCcEEEEeccc-CCCcC----CccceeeeeeccCCCCCeeEEEEc--CCCCeeEEEeCCCCeEEEEEccc
Q 023500 213 SGAADDSVQFFVESK-DDLID----GPSYKMLLKKEKAHDMDVNSVQWS--PGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 213 ~~~~d~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
+-+-++.+..|.+.+ .+... ...-...+.+...-.-.|+-+.|. |-+ .+||.|..-|.|.+||+.+
T Consensus 266 SkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~-~~la~gnq~g~v~vwdL~~ 338 (385)
T KOG1034|consen 266 SKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ-KMLALGNQSGKVYVWDLDN 338 (385)
T ss_pred ecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHH-HHHhhccCCCcEEEEECCC
Confidence 667777999997732 11110 011111222333334456666554 433 4688999999999999876
No 143
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.3e-19 Score=138.27 Aligned_cols=201 Identities=16% Similarity=0.368 Sum_probs=146.6
Q ss_pred eeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCC--eEEEEecCCe
Q 023500 38 ECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD--VLFSCSYDNT 115 (281)
Q Consensus 38 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~--~l~s~s~d~~ 115 (281)
.++..+.+|.++|++++. ++.+++|||.|.+|++||++...+ ...+..|.+.|+++.|.|... .|++|+.||.
T Consensus 34 ~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~q---lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~ 108 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQ---LGILLSHAGSITALKFYPPLSKSHLLSGSDDGH 108 (362)
T ss_pred eccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhh---hcceeccccceEEEEecCCcchhheeeecCCCc
Confidence 346678899999999987 579999999999999999975543 556778999999999998765 8999999999
Q ss_pred EEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecc
Q 023500 116 IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGY 195 (281)
Q Consensus 116 v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (281)
|-+|+. .+|.++..+ ++|.++|+.++.+|.+++.++.+.|+.++.|++-.++.... +.+ .
T Consensus 109 i~iw~~-----~~W~~~~sl----K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v---------~~L--~ 168 (362)
T KOG0294|consen 109 IIIWRV-----GSWELLKSL----KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFV---------LNL--K 168 (362)
T ss_pred EEEEEc-----CCeEEeeee----cccccccceeEecCCCceEEEEcCCceeeeehhhcCcccee---------ecc--C
Confidence 999954 346555544 47999999999999999999999999999998753322111 111 1
Q ss_pred cCcceEEEEeCCCce-eeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEE
Q 023500 196 HDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKI 274 (281)
Q Consensus 196 ~~~~v~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~i 274 (281)
+.. ..+.|+|+|. ++.++.+ .+-+|..... ..+..+ .....+.++.|-..+ .+++|++|+.|++
T Consensus 169 ~~a--t~v~w~~~Gd~F~v~~~~-~i~i~q~d~A-----~v~~~i-----~~~~r~l~~~~l~~~--~L~vG~d~~~i~~ 233 (362)
T KOG0294|consen 169 NKA--TLVSWSPQGDHFVVSGRN-KIDIYQLDNA-----SVFREI-----ENPKRILCATFLDGS--ELLVGGDNEWISL 233 (362)
T ss_pred Ccc--eeeEEcCCCCEEEEEecc-EEEEEecccH-----hHhhhh-----hccccceeeeecCCc--eEEEecCCceEEE
Confidence 122 2378888875 5555554 4566643221 111111 122457788887643 4779999999999
Q ss_pred EEcc
Q 023500 275 WELA 278 (281)
Q Consensus 275 w~~~ 278 (281)
||-.
T Consensus 234 ~D~d 237 (362)
T KOG0294|consen 234 KDTD 237 (362)
T ss_pred eccC
Confidence 9965
No 144
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.86 E-value=3.8e-18 Score=138.34 Aligned_cols=241 Identities=15% Similarity=0.175 Sum_probs=155.2
Q ss_pred ceeEEEEcCCCCEE-EEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEE-EecCCCcEEEEEecCCCee
Q 023500 5 TVRSCAWSPSGKLL-ATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLA-TCGRDKSVWIWEVMPGNEF 82 (281)
Q Consensus 5 ~i~~~~~~~~~~~l-~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~v~~w~~~~~~~~ 82 (281)
.+..++|+|+|+.+ ++++.++.+.+||..+++. ...+..+.. +..+.|+|+++.++ +++.|+.+++||+....
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~--~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~-- 106 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV--IGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRK-- 106 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEECCCCcE--EEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCe--
Confidence 36679999999875 6778889999999876643 334443333 46789999998765 45678999999997543
Q ss_pred EEeEeecCCccceeEEEecCCCCeEEEEecCC-eEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEE-E
Q 023500 83 ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN-TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV-S 160 (281)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~-~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s 160 (281)
.+..+.. ...+..+.|+|++..+++++.++ .+.+|+.+... ...... ....+..+.|+|+++.|+ +
T Consensus 107 -~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~-----~~~~~~-----~~~~~~~~~~s~dg~~l~~~ 174 (300)
T TIGR03866 107 -VLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYE-----IVDNVL-----VDQRPRFAEFTADGKELWVS 174 (300)
T ss_pred -EEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCe-----EEEEEE-----cCCCccEEEECCCCCEEEEE
Confidence 2333332 23467899999999999888875 45666654321 111111 112356789999998775 5
Q ss_pred eeCCCcEEEEeCCccccccCCCCcccceeEEeeccc--CcceEEEEeCCCce--eeecCCCCcEEEEecccCCCcCCccc
Q 023500 161 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYH--DRTIFSVHWSREGI--IASGAADDSVQFFVESKDDLIDGPSY 236 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~ 236 (281)
+..++.+++||.+..+.... +. ......+ ......+.+++++. +++.+.++.+.+|+.... ..
T Consensus 175 ~~~~~~v~i~d~~~~~~~~~-----~~--~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~-----~~- 241 (300)
T TIGR03866 175 SEIGGTVSVIDVATRKVIKK-----IT--FEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY-----EV- 241 (300)
T ss_pred cCCCCEEEEEEcCcceeeee-----ee--ecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC-----cE-
Confidence 55699999999874432110 00 0000000 11223566787764 445556678999966432 11
Q ss_pred eeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 237 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 237 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
.... .+...+.+++|+|+++.++++++.++.|++||+..
T Consensus 242 ---~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 242 ---LDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred ---EEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 1111 23346889999999987665567799999999875
No 145
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.86 E-value=1e-19 Score=142.66 Aligned_cols=211 Identities=22% Similarity=0.429 Sum_probs=148.1
Q ss_pred eecCCCCCeeEEEEcC-CCCEEEEecCCCcEEEEEecCCC----eeEEeEeecCCccceeEEEecCCC-CeEEEEecCCe
Q 023500 42 TLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGN----EFECVSVLQGHAQDVKMVQWHPTM-DVLFSCSYDNT 115 (281)
Q Consensus 42 ~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~~----~~~~~~~~~~~~~~v~~v~~~p~~-~~l~s~s~d~~ 115 (281)
.+.||+++|..++|+| +...|||||.|.+|++|.+.... ..+++..+.+|+..|--+.|||.. +.|+|++.|++
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 3468999999999999 67889999999999999986432 234567789999999999999985 57899999999
Q ss_pred EEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecc
Q 023500 116 IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGY 195 (281)
Q Consensus 116 v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (281)
|.+|+++... ...++ .|+..|+++.|+.+|.+|++.+.|..||+||...+...... ....
T Consensus 156 v~iWnv~tge-----ali~l-----~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~--------~~he-- 215 (472)
T KOG0303|consen 156 VSIWNVGTGE-----ALITL-----DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG--------VAHE-- 215 (472)
T ss_pred EEEEeccCCc-----eeeec-----CCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec--------cccc--
Confidence 9999988753 12222 39999999999999999999999999999998754432110 0000
Q ss_pred cCcceEEEEeCCCceeeecC----CCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCe
Q 023500 196 HDRTIFSVHWSREGIIASGA----ADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGM 271 (281)
Q Consensus 196 ~~~~v~~~~~~~~~~~~~~~----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~ 271 (281)
...+...+ |-.++.+++.+ ++..+.+|+... + ..+.. +.... -++.|.-==|.|+..-++++|-.|+.
T Consensus 216 G~k~~Rai-fl~~g~i~tTGfsr~seRq~aLwdp~n--l-~eP~~---~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~ 287 (472)
T KOG0303|consen 216 GAKPARAI-FLASGKIFTTGFSRMSERQIALWDPNN--L-EEPIA---LQELD-TSNGVLLPFYDPDTSIVYLCGKGDSS 287 (472)
T ss_pred CCCcceeE-EeccCceeeeccccccccceeccCccc--c-cCcce---eEEec-cCCceEEeeecCCCCEEEEEecCCcc
Confidence 11222222 33344444433 466777785532 1 11211 11122 22335444567777767788888999
Q ss_pred EEEEEcccC
Q 023500 272 IKIWELANT 280 (281)
Q Consensus 272 v~iw~~~~~ 280 (281)
||.|++.+.
T Consensus 288 IRYyEit~d 296 (472)
T KOG0303|consen 288 IRYFEITNE 296 (472)
T ss_pred eEEEEecCC
Confidence 999998764
No 146
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.85 E-value=1.6e-19 Score=138.58 Aligned_cols=259 Identities=20% Similarity=0.383 Sum_probs=174.8
Q ss_pred eeEEEEcCC----CCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCC-CCEEEEecCCCcEEEEEecCCC
Q 023500 6 VRSCAWSPS----GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 6 i~~~~~~~~----~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
-..++|+=+ ..++|.|+.-|.|+|.|+..++ +.+.+.+|...|+.+.|.|+ .++++++|.|.+||+|+++...
T Consensus 92 fytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~--~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~ 169 (385)
T KOG1034|consen 92 FYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQ--CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDV 169 (385)
T ss_pred eEEEEEEecCCCCCeeEEeecceeEEEEEecchhh--hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCe
Confidence 445556543 3588999999999999987764 57788999999999999995 6789999999999999997653
Q ss_pred eeEEeEe---ecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCC-------------Cceeeee----eee--c
Q 023500 81 EFECVSV---LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSD-------------NWHCVQT----ISE--S 138 (281)
Q Consensus 81 ~~~~~~~---~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~-------------~~~~~~~----~~~--~ 138 (281)
|+.+ +.+|.+.|-++.|++++..|+|++.|.++++|++...+.. ..+...+ +.. .
T Consensus 170 ---Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst 246 (385)
T KOG1034|consen 170 ---CVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFST 246 (385)
T ss_pred ---EEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccc
Confidence 5544 4679999999999999999999999999999998732110 0000000 000 1
Q ss_pred cCCccccEEEEEEccCCCEEEEeeCCCcEEEEeC-CccccccCCCCcccceeEEeec---ccCcceEEE--EeCC-Ccee
Q 023500 139 NNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA-DITRMQSGDGYASWRHLCTISG---YHDRTIFSV--HWSR-EGII 211 (281)
Q Consensus 139 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~--~~~~-~~~~ 211 (281)
...|+..|-|++|-. +++++=+-++.|..|.. ++.....+.... ...++..+ +..-.+.-+ ++++ ..++
T Consensus 247 ~diHrnyVDCvrw~g--d~ilSkscenaI~~w~pgkl~e~~~~vkp~--es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l 322 (385)
T KOG1034|consen 247 TDIHRNYVDCVRWFG--DFILSKSCENAIVCWKPGKLEESIHNVKPP--ESATTILGEFDYPMCDIWFIRFAFDPWQKML 322 (385)
T ss_pred cccccchHHHHHHHh--hheeecccCceEEEEecchhhhhhhccCCC--ccceeeeeEeccCccceEEEEEeecHHHHHH
Confidence 235788888888865 58888888889999966 322211000000 11111111 112223333 3444 3478
Q ss_pred eecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 212 ASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 212 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
+.|...|.+.+|++...+....+ .+. ...-...|+..+|+.++. +++...+|++|-=||..+
T Consensus 323 a~gnq~g~v~vwdL~~~ep~~~t---tl~--~s~~~~tVRQ~sfS~dgs-~lv~vcdd~~Vwrwdrv~ 384 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNNEPPKCT---TLT--HSKSGSTVRQTSFSRDGS-ILVLVCDDGTVWRWDRVS 384 (385)
T ss_pred hhccCCCcEEEEECCCCCCccCc---eEE--eccccceeeeeeecccCc-EEEEEeCCCcEEEEEeec
Confidence 88999999999988654332111 111 112345689999999886 556677799999998654
No 147
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=6e-20 Score=145.81 Aligned_cols=203 Identities=20% Similarity=0.300 Sum_probs=151.3
Q ss_pred CccceeEEEEcCCC-CEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcC-CCCEEEEecCCCcEEEEEecCC
Q 023500 2 HTRTVRSCAWSPSG-KLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 2 h~~~i~~~~~~~~~-~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~ 79 (281)
|++.|..++|+..- .+||+||.|.+|++||+.+++ |..++..|.+.|.+++|+| .+..|++||.|++|.+.|++..
T Consensus 242 HTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~--p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~ 319 (463)
T KOG0270|consen 242 HTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGK--PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP 319 (463)
T ss_pred chHHHHHHHhccccceeEEecCCCceEEEEEcCCCC--cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence 77888888888854 589999999999999998885 5778888999999999999 5789999999999999999843
Q ss_pred CeeEEeEeecCCccceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCC-CE
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG-DK 157 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~ 157 (281)
........+ .+.|..++|+|... .++++..||+|+-+|++... +++.++ .+|.+.|.++++++.- .+
T Consensus 320 ~~s~~~wk~---~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~----~~vwt~----~AHd~~ISgl~~n~~~p~~ 388 (463)
T KOG0270|consen 320 SNSGKEWKF---DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG----KPVWTL----KAHDDEISGLSVNIQTPGL 388 (463)
T ss_pred cccCceEEe---ccceEEEEecCCCceeEEEecCCceEEeeecCCCC----CceeEE----EeccCCcceEEecCCCCcc
Confidence 221111222 45689999999755 67788899999999887654 233333 4799999999998753 57
Q ss_pred EEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC--CceeeecCCCCcEEEEeccc
Q 023500 158 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR--EGIIASGAADDSVQFFVESK 227 (281)
Q Consensus 158 l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~d~~~~~~~~~~ 227 (281)
|++++.|+++++|++....+..... ..+ .-....|+++.+ .+.++.|+..+.+++|+...
T Consensus 389 l~t~s~d~~Vklw~~~~~~~~~v~~-------~~~---~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 389 LSTASTDKVVKLWKFDVDSPKSVKE-------HSF---KLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFT 450 (463)
T ss_pred eeeccccceEEEEeecCCCCccccc-------ccc---cccceeecccCCCcceEEEecCccceEEEeeccc
Confidence 9999999999999886543321110 000 011244555555 36788899999999996643
No 148
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.2e-19 Score=138.82 Aligned_cols=207 Identities=19% Similarity=0.329 Sum_probs=151.8
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC-
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN- 80 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~- 80 (281)
|+-.|..+...-.+++|++++.|..|.||+..+. .+.++......-+..+.||+|++|++++..-.|+||.+--.+
T Consensus 186 h~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq---~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kd 262 (420)
T KOG2096|consen 186 HQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQ---LLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKD 262 (420)
T ss_pred cccceEEEeecCCceEEEEecCCCcEEEEecCCc---eeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccC
Confidence 4556777888888999999999999999998743 355666666677788899999999999999999999964322
Q ss_pred ----eeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCC---CCCCceeeeeeeeccCCccccEEEEEEcc
Q 023500 81 ----EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDT---DSDNWHCVQTISESNNGHSSTIWALSFNA 153 (281)
Q Consensus 81 ----~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~---~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 153 (281)
+...+..+++|.+.|..++|+|+...++++|.||++++||.+-. ..++. .+.....+.....+...-+.++|
T Consensus 263 G~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk-~Lk~g~~pl~aag~~p~RL~lsP 341 (420)
T KOG2096|consen 263 GTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPK-ILKEGSAPLHAAGSEPVRLELSP 341 (420)
T ss_pred cchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCch-HhhcCCcchhhcCCCceEEEeCC
Confidence 22345678999999999999999999999999999999987521 11111 11111111111123334789999
Q ss_pred CCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEe
Q 023500 154 KGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFV 224 (281)
Q Consensus 154 ~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~ 224 (281)
+++.|+... ...+++|..+.++ .+ ..+...|...|.+++|+++|.+++.+.|+.++++.
T Consensus 342 ~g~~lA~s~-gs~l~~~~se~g~-----~~------~~~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 342 SGDSLAVSF-GSDLKVFASEDGK-----DY------PELEDIHSTTISSISYSSDGKYIATCGDRYVRVIR 400 (420)
T ss_pred CCcEEEeec-CCceEEEEcccCc-----cc------hhHHHhhcCceeeEEecCCCcEEeeecceeeeeec
Confidence 999887654 4469988665322 11 11223478899999999999988888999999884
No 149
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.85 E-value=8.2e-19 Score=149.13 Aligned_cols=265 Identities=19% Similarity=0.268 Sum_probs=189.4
Q ss_pred cceeEEEEcCCCC-EEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC-e
Q 023500 4 RTVRSCAWSPSGK-LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN-E 81 (281)
Q Consensus 4 ~~i~~~~~~~~~~-~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~-~ 81 (281)
+.|+.++|..||+ +||+|+..|.+.+||.+..+. .......|.+.|....|-|....+++++.|+++++|-...+. .
T Consensus 245 g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl-~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~ 323 (910)
T KOG1539|consen 245 GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKL-INVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGV 323 (910)
T ss_pred cceeEEEeccCCCeeEEeccCCceEEEEEcCCCee-eeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCc
Confidence 7899999999997 678888889999999987653 234456899999999999999999999999999999765332 1
Q ss_pred eEEeEeecCCccceeEEEec-CCCCeEEEEecCCeEEEEeCCCCC----CCC----------------------------
Q 023500 82 FECVSVLQGHAQDVKMVQWH-PTMDVLFSCSYDNTIKVWWAEDTD----SDN---------------------------- 128 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~-p~~~~l~s~s~d~~v~~w~~~~~~----~~~---------------------------- 128 (281)
...++.-.||..+-.|++|. .++..+.+++.|++.+.+.+.... +..
T Consensus 324 pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~ 403 (910)
T KOG1539|consen 324 PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAF 403 (910)
T ss_pred chheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeec
Confidence 23455667899999999998 567789999999988877543210 000
Q ss_pred -------ceeeeeeee----------cc--C-C----c------cccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccc
Q 023500 129 -------WHCVQTISE----------SN--N-G----H------SSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ 178 (281)
Q Consensus 129 -------~~~~~~~~~----------~~--~-~----h------~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~ 178 (281)
|..+..... .. . . + ...+++++.++-|.+.+.|...|.|.+|+++.+-..
T Consensus 404 ~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r 483 (910)
T KOG1539|consen 404 ENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHR 483 (910)
T ss_pred ccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeee
Confidence 000000000 00 0 0 1 245788889999999999999999999987643211
Q ss_pred cCCCCcccceeEEeecccCcceEEEEeCCC-ceeeecCCCCcEEEEecccCCCcC------C---cc-------------
Q 023500 179 SGDGYASWRHLCTISGYHDRTIFSVHWSRE-GIIASGAADDSVQFFVESKDDLID------G---PS------------- 235 (281)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~------~---~~------------- 235 (281)
....-...|..+|+.++.+.- ..+++++.+|-+.+|+.++..+.. . ..
T Consensus 484 ---------~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~d 554 (910)
T KOG1539|consen 484 ---------KSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALD 554 (910)
T ss_pred ---------cccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcC
Confidence 111112247889999988864 468899999999999877643211 0 00
Q ss_pred -c---------eeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 236 -Y---------KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 236 -~---------~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
. ........+|...|++++|||+|++ +++++-|++||+||+..
T Consensus 555 df~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrW-lisasmD~tIr~wDlpt 607 (910)
T KOG1539|consen 555 DFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRW-LISASMDSTIRTWDLPT 607 (910)
T ss_pred ceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcE-EEEeecCCcEEEEeccC
Confidence 0 0112345679999999999999986 66999999999999875
No 150
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.85 E-value=3e-19 Score=147.73 Aligned_cols=264 Identities=19% Similarity=0.249 Sum_probs=164.0
Q ss_pred EEEcCC---CCEEEEeeCCCcEEEEecCCCcee----eeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 9 CAWSPS---GKLLATASFDATTCIWEDVGGDYE----CVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 9 ~~~~~~---~~~l~tg~~d~~i~lw~~~~~~~~----~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
..|++- ..+||.+.+||.|.|+|.....+. .++....|...|..+.|-|...+|++++.|.++++||+....-
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 456652 347999999999999986544332 1345568999999999999777899999999999999975542
Q ss_pred eEEeEeecCCccceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCCc---------------eeeeeee---eccCCc
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNW---------------HCVQTIS---ESNNGH 142 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~~---------------~~~~~~~---~~~~~h 142 (281)
.....+.+|..-|.+++|+|+.. .+++|+.||.|.|||+.-...... .....+. ..-.+|
T Consensus 135 -~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~ 213 (720)
T KOG0321|consen 135 -VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA 213 (720)
T ss_pred -ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc
Confidence 22335789999999999999866 789999999999999764321000 0000000 001133
Q ss_pred cccEEE---EEEccCCCEEEEeeC-CCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCC
Q 023500 143 SSTIWA---LSFNAKGDKLVSCSD-DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAAD 217 (281)
Q Consensus 143 ~~~v~~---~~~~~~~~~l~s~~~-d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d 217 (281)
...+.. +.+..|...|++++. |+.|++||+...+.....+........... .-...+.++..+..| ++.+.+.|
T Consensus 214 s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~s-krs~G~~nL~lDssGt~L~AsCtD 292 (720)
T KOG0321|consen 214 SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHS-KRSVGQVNLILDSSGTYLFASCTD 292 (720)
T ss_pred cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcc-cceeeeEEEEecCCCCeEEEEecC
Confidence 333443 555577788999887 999999998644322221111000000000 001223445555433 55556669
Q ss_pred CcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 218 DSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
++|.+|++...... +. .++... -.......-..+|++. .+++|+.|....+|.+.++
T Consensus 293 ~sIy~ynm~s~s~s--P~--~~~sg~-~~~sf~vks~lSpd~~-~l~SgSsd~~ayiw~vs~~ 349 (720)
T KOG0321|consen 293 NSIYFYNMRSLSIS--PV--AEFSGK-LNSSFYVKSELSPDDC-SLLSGSSDEQAYIWVVSSP 349 (720)
T ss_pred CcEEEEeccccCcC--ch--hhccCc-ccceeeeeeecCCCCc-eEeccCCCcceeeeeecCc
Confidence 99999977543221 11 111100 0111122334678776 5779999999999998754
No 151
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.5e-18 Score=148.96 Aligned_cols=227 Identities=19% Similarity=0.285 Sum_probs=164.6
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|.+++-. +.+|++|+.++.|.+|....++.. ..+...+-++++++|+.+|.+++.||+|-.|++-++....
T Consensus 55 ~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~--~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s- 129 (933)
T KOG1274|consen 55 SGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEED--TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS- 129 (933)
T ss_pred cCceeEEEeec--ccceEEeeccceEEEeeCCCCCcc--ceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccc-
Confidence 45566666654 559999999999999976554432 2233456789999999999999999999999999986554
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCc-cccEEEEEEccCCCEEEE
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGH-SSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s 160 (281)
...++.+|.+.|.++.|+|.+++||+.+.||+|++|++++..... .+..+......- ...+..++|+|++..|+.
T Consensus 130 --~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~--tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~ 205 (933)
T KOG1274|consen 130 --QEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSK--TLTGVDKDNEFILSRICTRLAWHPKGGTLAV 205 (933)
T ss_pred --hheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhh--hcccCCccccccccceeeeeeecCCCCeEEe
Confidence 357789999999999999999999999999999999987542110 011111111111 456788999999888888
Q ss_pred eeCCCcEEEEeCCccccccCCCCcccceeEEeec-ccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCcccee
Q 023500 161 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISG-YHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKM 238 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 238 (281)
...|+.|++|+.+. |.....+.. .+...+..++|+|+| ++|+++.||.+-+|+...-
T Consensus 206 ~~~d~~Vkvy~r~~-----------we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~---------- 264 (933)
T KOG1274|consen 206 PPVDNTVKVYSRKG-----------WELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTH---------- 264 (933)
T ss_pred eccCCeEEEEccCC-----------ceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccc----------
Confidence 88999999997753 232222222 233448889999988 5777888999999977430
Q ss_pred eeeeccCCCCCeeEEEEcCCCCe
Q 023500 239 LLKKEKAHDMDVNSVQWSPGERR 261 (281)
Q Consensus 239 ~~~~~~~h~~~v~~~~~~~~~~~ 261 (281)
.. ..-...|.+++|.|+...
T Consensus 265 ~~---~~~~~~Vc~~aw~p~~n~ 284 (933)
T KOG1274|consen 265 ER---HEFKRAVCCEAWKPNANA 284 (933)
T ss_pred hh---ccccceeEEEecCCCCCe
Confidence 00 122356899999997653
No 152
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.84 E-value=3.7e-19 Score=148.28 Aligned_cols=232 Identities=21% Similarity=0.364 Sum_probs=169.3
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeE
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE 83 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~ 83 (281)
..|..++|.|||..|+.+. +..+.+||++.+. .+.++++|.+.|+|++|+.+|.+++||+.|+.|.+|+-+....
T Consensus 13 hci~d~afkPDGsqL~lAA-g~rlliyD~ndG~--llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-- 87 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILAA-GSRLLVYDTSDGT--LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-- 87 (1081)
T ss_pred cchheeEECCCCceEEEec-CCEEEEEeCCCcc--cccccccccceEEEEEEccCCceeccCCCceeEEEecccccce--
Confidence 3688999999998776654 4558899998875 4789999999999999999999999999999999998654332
Q ss_pred EeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeC
Q 023500 84 CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD 163 (281)
Q Consensus 84 ~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 163 (281)
-. ..|.+.|.|..|+|-.+.+++++-. ..-+|..++.. +.+ ..-..++.+.+|..||++|+.|..
T Consensus 88 --Lk-YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~---------V~K--~kss~R~~~CsWtnDGqylalG~~ 152 (1081)
T KOG1538|consen 88 --LK-YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS---------VSK--HKSSSRIICCSWTNDGQYLALGMF 152 (1081)
T ss_pred --ee-eccCCeeeEeecCchHHHhhhcchh-hccccChhhhh---------HHh--hhhheeEEEeeecCCCcEEEEecc
Confidence 11 3689999999999999999998853 34567333221 111 012356889999999999999999
Q ss_pred CCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc------eeeecCCCCcEEEEecccCCCcCCccce
Q 023500 164 DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG------IIASGAADDSVQFFVESKDDLIDGPSYK 237 (281)
Q Consensus 164 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 237 (281)
+|+|.+=+-. +.+ +....-++..+.+|++++|+|.. .++....++++.++....
T Consensus 153 nGTIsiRNk~-gEe---------k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG---------- 212 (1081)
T KOG1538|consen 153 NGTISIRNKN-GEE---------KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG---------- 212 (1081)
T ss_pred CceEEeecCC-CCc---------ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc----------
Confidence 9999875321 110 12223345578899999999842 466666777888875543
Q ss_pred eeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 238 MLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 238 ~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
..+...+.-.....|+.+.|+|.+ +..||.|+.+++|-
T Consensus 213 ~~Igk~r~L~FdP~CisYf~NGEy-~LiGGsdk~L~~fT 250 (1081)
T KOG1538|consen 213 KQIGKDRALNFDPCCISYFTNGEY-ILLGGSDKQLSLFT 250 (1081)
T ss_pred eeecccccCCCCchhheeccCCcE-EEEccCCCceEEEe
Confidence 122333445567789999998875 45677799998875
No 153
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=3.9e-18 Score=129.83 Aligned_cols=238 Identities=15% Similarity=0.217 Sum_probs=160.6
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|..++.+++|.++. .+++|+-||.|+++|.+++... .+..|.++|.|+.+++....+++||.|++|++||.+...
T Consensus 53 ~~~plL~c~F~d~~-~~~~G~~dg~vr~~Dln~~~~~---~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~- 127 (323)
T KOG1036|consen 53 HGAPLLDCAFADES-TIVTGGLDGQVRRYDLNTGNED---QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV- 127 (323)
T ss_pred cCCceeeeeccCCc-eEEEeccCceEEEEEecCCcce---eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc-
Confidence 77899999999754 4569999999999999887643 445699999999999988899999999999999986421
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
+..++. ....|.++.. .++.|+.|+.|..|.+||+...+.. ++.....-.-++.|+++.|+++-++.+
T Consensus 128 --~~~~~d-~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~-------~q~reS~lkyqtR~v~~~pn~eGy~~s 195 (323)
T KOG1036|consen 128 --VVGTFD-QGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEP-------FQRRESSLKYQTRCVALVPNGEGYVVS 195 (323)
T ss_pred --cccccc-cCceEEEEec--cCCEEEEeecCceEEEEEcccccch-------hhhccccceeEEEEEEEecCCCceEEE
Confidence 222222 2235666544 4568899999999999998764321 111112234678899999988888999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeec--ccCcceEEEEeCCC-ceeeecCCCCcEEEEecccCCCcCCcccee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISG--YHDRTIFSVHWSRE-GIIASGAADDSVQFFVESKDDLIDGPSYKM 238 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 238 (281)
+-||.+.+=..+.........++ .+-.+.... -.-.+|.+++|+|- +.+++|+.||-+.+|+... . ++
T Consensus 196 SieGRVavE~~d~s~~~~skkya-FkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~-----r---Kr 266 (323)
T KOG1036|consen 196 SIEGRVAVEYFDDSEEAQSKKYA-FKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFN-----R---KR 266 (323)
T ss_pred eecceEEEEccCCchHHhhhcee-EEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcc-----h---hh
Confidence 99998876333322111110000 000000000 01357889999985 6799999999999996532 1 12
Q ss_pred eeeeccCCCCCeeEEEEcCCCCeeEEEeC
Q 023500 239 LLKKEKAHDMDVNSVQWSPGERRLLASAS 267 (281)
Q Consensus 239 ~~~~~~~h~~~v~~~~~~~~~~~~~~s~~ 267 (281)
+ ++....+..|..++|+.+|. +||.++
T Consensus 267 l-~q~~~~~~SI~slsfs~dG~-~LAia~ 293 (323)
T KOG1036|consen 267 L-KQLAKYETSISSLSFSMDGS-LLAIAS 293 (323)
T ss_pred h-hhccCCCCceEEEEeccCCC-eEEEEe
Confidence 2 22223345689999999886 456554
No 154
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.83 E-value=1.2e-18 Score=133.34 Aligned_cols=173 Identities=18% Similarity=0.349 Sum_probs=135.6
Q ss_pred CCccceeEEEEcCCCCEEEEeeCCCcEEEEec-CCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCC
Q 023500 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWED-VGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 1 ~h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~-~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~ 79 (281)
+|...|+.++|+|..+.|++|+.|.+-.+|.. .++++++.-.+..++..+++|.|+|.++.+++||..+.|-||-+...
T Consensus 53 ~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~E 132 (361)
T KOG1523|consen 53 EHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQE 132 (361)
T ss_pred hhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecc
Confidence 58899999999999999999999999999987 67777777777789999999999999999999999999999998766
Q ss_pred CeeEE-eEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeC-----CCCC-CCCce---eeeeeeeccCCccccEEEE
Q 023500 80 NEFEC-VSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA-----EDTD-SDNWH---CVQTISESNNGHSSTIWAL 149 (281)
Q Consensus 80 ~~~~~-~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~-----~~~~-~~~~~---~~~~~~~~~~~h~~~v~~~ 149 (281)
+.+.. ..+-+.+.+.|.++.|||++-++++||.|+.++++-. ++.+ ..+|- ....+-.......+.+..+
T Consensus 133 NdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v 212 (361)
T KOG1523|consen 133 NDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGV 212 (361)
T ss_pred cceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeee
Confidence 54422 2223446778999999999999999999999999842 2211 11110 0001100111345778999
Q ss_pred EEccCCCEEEEeeCCCcEEEEeCC
Q 023500 150 SFNAKGDKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 150 ~~~~~~~~l~s~~~d~~i~~w~~~ 173 (281)
.|+|+|..|+=.+.|+++.+-|..
T Consensus 213 ~fs~sG~~lawv~Hds~v~~~da~ 236 (361)
T KOG1523|consen 213 LFSPSGNRLAWVGHDSTVSFVDAA 236 (361)
T ss_pred EeCCCCCEeeEecCCCceEEeecC
Confidence 999999999999999999998764
No 155
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=9.7e-19 Score=134.86 Aligned_cols=149 Identities=13% Similarity=0.267 Sum_probs=113.0
Q ss_pred CEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcC--CCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCc-
Q 023500 16 KLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA--SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHA- 92 (281)
Q Consensus 16 ~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~--~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~- 92 (281)
..+|++...|.++|||..++. .+..+++|...++.++|.. .++.+.+++.||+|++||++...+. ....+..+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~--~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~-a~~~~~~~~~ 117 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ--LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES-ARISWTQQSG 117 (376)
T ss_pred eeEEEEecCCeEEEEeccchh--hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh-hheeccCCCC
Confidence 358888889999999988764 3678889999999999976 4678999999999999999866542 233445554
Q ss_pred cceeEEEecCCCCeEEEEec----CCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC-CCEEEEeeCCCcE
Q 023500 93 QDVKMVQWHPTMDVLFSCSY----DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK-GDKLVSCSDDLTI 167 (281)
Q Consensus 93 ~~v~~v~~~p~~~~l~s~s~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i 167 (281)
....|++.+-.++.++.|.+ |-.|.+||+..... .+......|..-|++++|+|. ..+|++|+.||.+
T Consensus 118 ~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq-------~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLv 190 (376)
T KOG1188|consen 118 TPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQ-------LLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLV 190 (376)
T ss_pred CcceEeeccCcCCeEEeccccccCceEEEEEEeccccc-------hhhhhhhhccCcceeEEecCCCCCeEEeecccceE
Confidence 34556666556677777653 45889998875431 122233579999999999995 4699999999999
Q ss_pred EEEeCCc
Q 023500 168 KIWGADI 174 (281)
Q Consensus 168 ~~w~~~~ 174 (281)
.+||++.
T Consensus 191 nlfD~~~ 197 (376)
T KOG1188|consen 191 NLFDTKK 197 (376)
T ss_pred EeeecCC
Confidence 9999864
No 156
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.82 E-value=6.4e-17 Score=131.15 Aligned_cols=230 Identities=12% Similarity=0.199 Sum_probs=149.9
Q ss_pred CCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEE-EEecCCCcEEEEEecCCCeeEEeEeecCCcc
Q 023500 15 GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLL-ATCGRDKSVWIWEVMPGNEFECVSVLQGHAQ 93 (281)
Q Consensus 15 ~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~ 93 (281)
++++++++.|+.+.+||..+++ .+..+.++. .+.+++|+|++..+ ++++.++.|++||...++. ...+..+.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~--~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~---~~~~~~~~- 73 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLE--VTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV---IGTLPSGP- 73 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCc--eEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcE---EEeccCCC-
Confidence 3578899999999999987664 355666544 46789999999876 6778899999999875542 23333333
Q ss_pred ceeEEEecCCCCeEEE-EecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCC-cEEEEe
Q 023500 94 DVKMVQWHPTMDVLFS-CSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDL-TIKIWG 171 (281)
Q Consensus 94 ~v~~v~~~p~~~~l~s-~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~-~i~~w~ 171 (281)
.+..+.|+|+++.+++ ++.|+.+++|++.... .+..+. +...+.+++|+|++..++++..++ .+.+||
T Consensus 74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~-----~~~~~~-----~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d 143 (300)
T TIGR03866 74 DPELFALHPNGKILYIANEDDNLVTVIDIETRK-----VLAEIP-----VGVEPEGMAVSPDGKIVVNTSETTNMAHFID 143 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCeEEEEECCCCe-----EEeEee-----CCCCcceEEECCCCCEEEEEecCCCeEEEEe
Confidence 3567899999987654 4568999999886531 222221 123357899999999999888765 456677
Q ss_pred CCccccccCCCCcccceeEEeecccCcceEEEEeCCCce-e-eecCCCCcEEEEecccCCCcCCccceeee-eeccCC--
Q 023500 172 ADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-I-ASGAADDSVQFFVESKDDLIDGPSYKMLL-KKEKAH-- 246 (281)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~h-- 246 (281)
.+.... ..... .......+.|++++. + +++..++.+.+|+....... ..+. .....+
T Consensus 144 ~~~~~~-----------~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~-----~~~~~~~~~~~~~ 205 (300)
T TIGR03866 144 TKTYEI-----------VDNVL--VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVI-----KKITFEIPGVHPE 205 (300)
T ss_pred CCCCeE-----------EEEEE--cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceee-----eeeeecccccccc
Confidence 653211 11111 123345678888764 3 44456899999977543211 1110 000011
Q ss_pred CCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 247 DMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 247 ~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
......++|+|+++.++++.+.++.+.+||+..
T Consensus 206 ~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~ 238 (300)
T TIGR03866 206 AVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT 238 (300)
T ss_pred cCCccceEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 112356889999887666666778899999753
No 157
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.82 E-value=1.1e-18 Score=140.86 Aligned_cols=241 Identities=17% Similarity=0.237 Sum_probs=171.8
Q ss_pred ceeEEEEcCCCC-EEEEeeCCCcEEEEecCCC--ceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 5 TVRSCAWSPSGK-LLATASFDATTCIWEDVGG--DYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 5 ~i~~~~~~~~~~-~l~tg~~d~~i~lw~~~~~--~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
.+..+.|+.... ..|+.+.|..+++|...+. +...+....+. .-.|++......++++||..+.|++||++..
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k-- 111 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAK-- 111 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHH--
Confidence 477788887654 3456678889999975433 23333333332 3345555555689999999999999999732
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCC-EEEE
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD-KLVS 160 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s 160 (281)
.+.+.+++|.+.|+++.++-...+|++++..|.|.+..+..... ..++. .+....|.-+.|+|..+ +|.+
T Consensus 112 -l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~-----tt~f~---~~sgqsvRll~ys~skr~lL~~ 182 (673)
T KOG4378|consen 112 -LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK-----TTTFT---IDSGQSVRLLRYSPSKRFLLSI 182 (673)
T ss_pred -HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc-----cccee---cCCCCeEEEeecccccceeeEe
Confidence 35677899999999999999999999999999999986654321 11121 11124566899999766 5777
Q ss_pred eeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC--CceeeecCCCCcEEEEecccCCCcCCcccee
Q 023500 161 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR--EGIIASGAADDSVQFFVESKDDLIDGPSYKM 238 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 238 (281)
++.+|.|.+||+... ++.......|..+...++|+| +.++++.+.|+.+.+|+..... ..+.
T Consensus 183 asd~G~VtlwDv~g~-----------sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~-----s~~~ 246 (673)
T KOG4378|consen 183 ASDKGAVTLWDVQGM-----------SPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA-----STDR 246 (673)
T ss_pred eccCCeEEEEeccCC-----------CcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc-----ccce
Confidence 899999999998643 222233334677777777776 4578999999999999775421 1122
Q ss_pred eeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 239 LLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 239 ~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
+ ..+.|..+++|.++|. +|+.|+..|.|..||++.+
T Consensus 247 l-----~y~~Plstvaf~~~G~-~L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 247 L-----TYSHPLSTVAFSECGT-YLCAGNSKGELIAYDMRST 282 (673)
T ss_pred e-----eecCCcceeeecCCce-EEEeecCCceEEEEecccC
Confidence 2 2355789999999875 6788999999999999754
No 158
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=2.2e-18 Score=140.62 Aligned_cols=169 Identities=20% Similarity=0.297 Sum_probs=128.3
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeee-ecCCCCCeeEEEEcC--CCCEEEEecCCCcEEEEEecC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVAT-LEGHENEVKSVSWNA--SGTLLATCGRDKSVWIWEVMP 78 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~-~~~h~~~v~~v~~~~--~~~~l~s~~~d~~v~~w~~~~ 78 (281)
|++-|+|++|+.+|.+|++||.|--+.|||+...+. ++. -.||...|++++|-| +.+.++||+.|..|+++|+..
T Consensus 49 H~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl--lhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~ 126 (758)
T KOG1310|consen 49 HTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL--LHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDS 126 (758)
T ss_pred ccceecceeecCCCCEEeecCCcceEEeecchhcce--eeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccc
Confidence 889999999999999999999999999999875443 333 368999999999999 356789999999999999974
Q ss_pred CC-------eeEEeEeecCCccceeEEEecCCC-CeEEEEecCCeEEEEeCCCCCCCC--ceeeeeeeeccCCccccEEE
Q 023500 79 GN-------EFECVSVLQGHAQDVKMVQWHPTM-DVLFSCSYDNTIKVWWAEDTDSDN--WHCVQTISESNNGHSSTIWA 148 (281)
Q Consensus 79 ~~-------~~~~~~~~~~~~~~v~~v~~~p~~-~~l~s~s~d~~v~~w~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~ 148 (281)
.. ..+....+..|...|..++-.|.+ +.+.++++||+++-+|+.+...-. ..+...+... ....-...|
T Consensus 127 ~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny-~~~lielk~ 205 (758)
T KOG1310|consen 127 SKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNY-NPQLIELKC 205 (758)
T ss_pred ccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHh-chhhheeee
Confidence 22 122345567899999999999988 789999999999999997643210 0010011000 011234578
Q ss_pred EEEccCC-CEEEEeeCCCcEEEEeCC
Q 023500 149 LSFNAKG-DKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 149 ~~~~~~~-~~l~s~~~d~~i~~w~~~ 173 (281)
+..+|.. .+|+.|+.|...++||.+
T Consensus 206 ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 206 LTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred eeecCCCCceEEecCCCchhhhhhhh
Confidence 9999865 589999999999999953
No 159
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.81 E-value=2e-19 Score=139.61 Aligned_cols=157 Identities=17% Similarity=0.355 Sum_probs=125.9
Q ss_pred cceeEEEEcCCC-CEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCee
Q 023500 4 RTVRSCAWSPSG-KLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF 82 (281)
Q Consensus 4 ~~i~~~~~~~~~-~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~ 82 (281)
+.|.++.|+|.- .+|++|+.|++|.|||..+... ++.+. -+..-+.|+|+|.+-.+++|+.|.++..+|+..-.
T Consensus 188 Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~P--l~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~-- 262 (433)
T KOG0268|consen 188 DSISSVKFNPVETSILASCASDRSIVLYDLRQASP--LKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS-- 262 (433)
T ss_pred CceeEEecCCCcchheeeeccCCceEEEecccCCc--cceee-eeccccceecCccccceeeccccccceehhhhhhc--
Confidence 578899999955 5888999999999999876542 22222 13445789999988889999999999999987544
Q ss_pred EEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee
Q 023500 83 ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS 162 (281)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 162 (281)
.++.+..+|.++|..|.|+|.|+-+++||.|.+|+|+.+....+.....-. .-..|.|+.|+.|.+++++|+
T Consensus 263 ~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk--------RMq~V~~Vk~S~Dskyi~SGS 334 (433)
T KOG0268|consen 263 RPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK--------RMQHVFCVKYSMDSKYIISGS 334 (433)
T ss_pred ccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh--------hhheeeEEEEeccccEEEecC
Confidence 357788999999999999999999999999999999988766543211001 114589999999999999999
Q ss_pred CCCcEEEEeCC
Q 023500 163 DDLTIKIWGAD 173 (281)
Q Consensus 163 ~d~~i~~w~~~ 173 (281)
.|+.|++|...
T Consensus 335 dd~nvRlWka~ 345 (433)
T KOG0268|consen 335 DDGNVRLWKAK 345 (433)
T ss_pred CCcceeeeecc
Confidence 99999999643
No 160
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.81 E-value=5.2e-18 Score=135.43 Aligned_cols=214 Identities=18% Similarity=0.280 Sum_probs=156.6
Q ss_pred eeeecCCCCCeeEEEEcCCC--CEEEEecCCCcEEEEEec-CCCeeEEeEeecCCccceeEEEecCCCC-eEEEEecCCe
Q 023500 40 VATLEGHENEVKSVSWNASG--TLLATCGRDKSVWIWEVM-PGNEFECVSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNT 115 (281)
Q Consensus 40 ~~~~~~h~~~v~~v~~~~~~--~~l~s~~~d~~v~~w~~~-~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~ 115 (281)
.....-+.+.|++++|+|.. ..+++|..-|+|-+||+. ..........+..|...|.++.|+|... .+++.|.||+
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence 34455688999999999965 468888889999999994 2222234566778999999999999754 7999999999
Q ss_pred EEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecc
Q 023500 116 IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGY 195 (281)
Q Consensus 116 v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (281)
|++-|++..-.+ .+..+. .-......++|+.+...++.+..=|.+.+||.+..+.. +..++ .
T Consensus 259 iR~~D~~~~i~e---~v~s~~----~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~----~~~~~-------l 320 (498)
T KOG4328|consen 259 IRLQDFEGNISE---EVLSLD----TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE----YENLR-------L 320 (498)
T ss_pred eeeeeecchhhH---HHhhcC----ccceeeeeccccCCCccEEEeecccceEEEEeecCCcc----chhhh-------h
Confidence 999988765321 111111 12345667888888778888887778999998754321 11111 3
Q ss_pred cCcceEEEEeCCC--ceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEE
Q 023500 196 HDRTIFSVHWSRE--GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIK 273 (281)
Q Consensus 196 ~~~~v~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~ 273 (281)
|...|.++.+.|- .++++++.|++.++|+.+.-.....+ +-....|...|+++.|+|.+.. |+|-+.|..||
T Consensus 321 h~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp-----~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IR 394 (498)
T KOG4328|consen 321 HKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASP-----FLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIR 394 (498)
T ss_pred hhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCc-----ceecccccceeeeeEEcCCCCc-eEeeccCCceE
Confidence 6778999999884 57999999999999987642221111 1223468899999999999877 66888899999
Q ss_pred EEEc
Q 023500 274 IWEL 277 (281)
Q Consensus 274 iw~~ 277 (281)
|||.
T Consensus 395 v~ds 398 (498)
T KOG4328|consen 395 VFDS 398 (498)
T ss_pred Eeec
Confidence 9997
No 161
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.80 E-value=4.3e-18 Score=128.82 Aligned_cols=210 Identities=21% Similarity=0.364 Sum_probs=144.9
Q ss_pred CccceeEEEEcCCC-----CEEEEeeCCCcEEEEecC--CCceeeeeee-----cCCCCCeeEEEEcC-CCCEEEEecCC
Q 023500 2 HTRTVRSCAWSPSG-----KLLATASFDATTCIWEDV--GGDYECVATL-----EGHENEVKSVSWNA-SGTLLATCGRD 68 (281)
Q Consensus 2 h~~~i~~~~~~~~~-----~~l~tg~~d~~i~lw~~~--~~~~~~~~~~-----~~h~~~v~~v~~~~-~~~~l~s~~~d 68 (281)
|-.+++.+-|.|+. ++|||.+ ..++||... ..+..+...+ ..|..++++..|+. +.++|.++|-|
T Consensus 95 ~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiD 172 (364)
T KOG0290|consen 95 HPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSID 172 (364)
T ss_pred CCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeeccc
Confidence 55678999999986 3777765 569999865 3333332222 34667999999988 78999999999
Q ss_pred CcEEEEEecCCCeeEEeEeecCCccceeEEEecCCC-CeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEE
Q 023500 69 KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTM-DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 147 (281)
Q Consensus 69 ~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~-~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 147 (281)
-+..+||+..+........+-+|..+|..++|...+ +++++++.||+||++|+.+.+-. ..+.+- . ....+..
T Consensus 173 TTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS--TIIYE~---p-~~~~pLl 246 (364)
T KOG0290|consen 173 TTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS--TIIYED---P-SPSTPLL 246 (364)
T ss_pred CeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc--eEEecC---C-CCCCcce
Confidence 999999998764333345567899999999999854 47999999999999988754211 011110 0 1123344
Q ss_pred EEEEccC-CCEEEEeeCCC-cEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEec
Q 023500 148 ALSFNAK-GDKLVSCSDDL-TIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVE 225 (281)
Q Consensus 148 ~~~~~~~-~~~l~s~~~d~-~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~ 225 (281)
-++|++. -.++++-..|+ .|.+-|++.-
T Consensus 247 RLswnkqDpnymATf~~dS~~V~iLDiR~P-------------------------------------------------- 276 (364)
T KOG0290|consen 247 RLSWNKQDPNYMATFAMDSNKVVILDIRVP-------------------------------------------------- 276 (364)
T ss_pred eeccCcCCchHHhhhhcCCceEEEEEecCC--------------------------------------------------
Confidence 5566543 34555544333 3433333210
Q ss_pred ccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 226 SKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
..-+.+...|...|+.++|.|..+.-++|||+|..+.|||+..+
T Consensus 277 -----------~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 277 -----------CTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred -----------CcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 11133456799999999999998888999999999999998754
No 162
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=7.7e-17 Score=138.06 Aligned_cols=271 Identities=20% Similarity=0.295 Sum_probs=178.4
Q ss_pred CCccceeEEEEcCCCCEEEEeeCCCcEEEEecCC--CceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 023500 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVG--GDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP 78 (281)
Q Consensus 1 ~h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~--~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~ 78 (281)
.|+..+++.+++|.++++|+|..||.|.+|.... ++....+.+.=|...|.+++|+++|.+|+|||..+.+-+|.+..
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 3777899999999999999999999999997654 22222344555889999999999999999999999999999876
Q ss_pred CCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeec----cCCccccEEEEEEccC
Q 023500 79 GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISES----NNGHSSTIWALSFNAK 154 (281)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~----~~~h~~~v~~~~~~~~ 154 (281)
+.. .-+..-.+.|..+.++|++.+.+....|+.|.+-...+... ..-+..+... ..+.++-.+.++++|.
T Consensus 283 ~~k----qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~--k~tIsgi~~~~~~~k~~~~~l~t~~~idpr 356 (792)
T KOG1963|consen 283 GKK----QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEI--KSTISGIKPPTPSTKTRPQSLTTGVSIDPR 356 (792)
T ss_pred CCc----ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhh--hhhccCccCCCccccccccccceeEEEcCC
Confidence 541 22334467899999999999999999999998886543211 1111111111 1223445667788886
Q ss_pred CCEEEEeeCCCcEEEEeCCccccc---------cCCCC------------------------------------------
Q 023500 155 GDKLVSCSDDLTIKIWGADITRMQ---------SGDGY------------------------------------------ 183 (281)
Q Consensus 155 ~~~l~s~~~d~~i~~w~~~~~~~~---------~~~~~------------------------------------------ 183 (281)
...++-++..|.|++||.-..... ...+.
T Consensus 357 ~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~ 436 (792)
T KOG1963|consen 357 TNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQ 436 (792)
T ss_pred CCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEE
Confidence 667777888888888875311100 00000
Q ss_pred -----cccceeEEeecccCcceEEEEeC--CCc-eeeecCCCCcEEEEecccCCCc-CCccceeeeeeccCCCCCeeEEE
Q 023500 184 -----ASWRHLCTISGYHDRTIFSVHWS--REG-IIASGAADDSVQFFVESKDDLI-DGPSYKMLLKKEKAHDMDVNSVQ 254 (281)
Q Consensus 184 -----~~~~~~~~~~~~~~~~v~~~~~~--~~~-~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~~~ 254 (281)
+.+.....+...|+......++. +.. ..++++.|+.+++|........ .......+......|..++++++
T Consensus 437 ~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~ 516 (792)
T KOG1963|consen 437 YNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALC 516 (792)
T ss_pred EcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchh
Confidence 00000111111122222222222 222 6788899999999988543222 22233334444446899999999
Q ss_pred EcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 255 WSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 255 ~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
|+.+|. ++++|.|+.|.|||..+
T Consensus 517 fs~dGs--lla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 517 FSQDGS--LLAVSFDDTITIWDYDT 539 (792)
T ss_pred hcCCCc--EEEEecCCEEEEecCCC
Confidence 999885 45788899999999765
No 163
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.80 E-value=1.1e-17 Score=131.33 Aligned_cols=204 Identities=22% Similarity=0.378 Sum_probs=142.8
Q ss_pred CccceeEEEEcC-CCCEEEEeeCCCcEEEEecCCC-----ceeeeeeecCCCCCeeEEEEcCC-CCEEEEecCCCcEEEE
Q 023500 2 HTRTVRSCAWSP-SGKLLATASFDATTCIWEDVGG-----DYECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIW 74 (281)
Q Consensus 2 h~~~i~~~~~~~-~~~~l~tg~~d~~i~lw~~~~~-----~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~~w 74 (281)
|+.+|..++|+| +...+|+||+|.+|.||+.-.+ ..+++..+.||...|--++|+|. .+.|+|+|.|++|.+|
T Consensus 80 Ht~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iW 159 (472)
T KOG0303|consen 80 HTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIW 159 (472)
T ss_pred ccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEE
Confidence 889999999999 6678999999999999985322 23457889999999999999995 6789999999999999
Q ss_pred EecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccc-cEEEEEEcc
Q 023500 75 EVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSS-TIWALSFNA 153 (281)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~ 153 (281)
++..+.. +-.+. |.+-|.++.|+.++.++++++.|.+|+|||...... . ... .+|.+ ...-+.|-.
T Consensus 160 nv~tgea---li~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~------v--~e~-~~heG~k~~Raifl~ 226 (472)
T KOG0303|consen 160 NVGTGEA---LITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTV------V--SEG-VAHEGAKPARAIFLA 226 (472)
T ss_pred eccCCce---eeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcE------e--eec-ccccCCCcceeEEec
Confidence 9977653 33344 999999999999999999999999999998765431 1 111 23322 234566777
Q ss_pred CCCEEEEee---CCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC-c-eeeecCCCCcEEEEecccC
Q 023500 154 KGDKLVSCS---DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE-G-IIASGAADDSVQFFVESKD 228 (281)
Q Consensus 154 ~~~~l~s~~---~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~-~~~~~~~d~~~~~~~~~~~ 228 (281)
++..+-||- .+..+.+||.+... +.. ....+. ....|.-=-++++ + +++.|-.|+++|.|.+..+
T Consensus 227 ~g~i~tTGfsr~seRq~aLwdp~nl~----eP~----~~~elD--tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 227 SGKIFTTGFSRMSERQIALWDPNNLE----EPI----ALQELD--TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred cCceeeeccccccccceeccCccccc----Ccc----eeEEec--cCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 887665553 56788899864211 000 000000 0111111123333 2 4566778999999976543
No 164
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=2.7e-17 Score=129.43 Aligned_cols=269 Identities=16% Similarity=0.229 Sum_probs=181.8
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCC----Cceeeeeeec-CCCCCeeEEEEcCCCCEEEEecCCCcEEEEEe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVG----GDYECVATLE-GHENEVKSVSWNASGTLLATCGRDKSVWIWEV 76 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~----~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~ 76 (281)
|.+.|+++.|+.++++||+|+.|...++|.... ...+++.... .|...|.|++|+...+++++|+.+++|.+.|+
T Consensus 55 H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDi 134 (609)
T KOG4227|consen 55 HTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDI 134 (609)
T ss_pred hccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeec
Confidence 778899999999999999999999999998532 1123444443 35589999999998899999999999999999
Q ss_pred cCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCC-
Q 023500 77 MPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG- 155 (281)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~- 155 (281)
...+... +..-......|..+..+|..+.+++.+.++.|.+||.....+.. ..+... .-......+.|+|..
T Consensus 135 Et~qsi~-V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~----~~~~~A--N~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 135 ETKQSIY-VANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPI----SLVLPA--NSGKNFYTAEFHPETP 207 (609)
T ss_pred ccceeee-eecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCC----ceeeec--CCCccceeeeecCCCc
Confidence 7654322 11112234589999999999999999999999999987653211 111111 123446778899864
Q ss_pred CEEEEeeCCCcEEEEeCCcccccc-----CCCCc----cc----------------ceeE-Eeeccc-------------
Q 023500 156 DKLVSCSDDLTIKIWGADITRMQS-----GDGYA----SW----------------RHLC-TISGYH------------- 196 (281)
Q Consensus 156 ~~l~s~~~d~~i~~w~~~~~~~~~-----~~~~~----~~----------------~~~~-~~~~~~------------- 196 (281)
.+|++.+..+-+.+||....+... ..+++ .| +..+ .+..++
T Consensus 208 ~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~ 287 (609)
T KOG4227|consen 208 ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNP 287 (609)
T ss_pred eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCC
Confidence 578888888889999976432110 00000 00 0000 001111
Q ss_pred -----CcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCC--------------ccceeeeeeccCCCCCeeEEEEcC
Q 023500 197 -----DRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDG--------------PSYKMLLKKEKAHDMDVNSVQWSP 257 (281)
Q Consensus 197 -----~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~h~~~v~~~~~~~ 257 (281)
..++.+++|-.+..+++|+.+=.+.+|.+....-..+ ......+...++|.+-++.+.|+|
T Consensus 288 ~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~ 367 (609)
T KOG4227|consen 288 NGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQ 367 (609)
T ss_pred CcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecC
Confidence 1244556666666788999998999997654322111 011112234578999999999999
Q ss_pred CCCeeEEEeCCCCeEEEEEcc
Q 023500 258 GERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 258 ~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
.. ++|++.+-...++||.-.
T Consensus 368 H~-~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 368 HN-NLLVSSGVENSFKLWSDH 387 (609)
T ss_pred Cc-ceEeccchhhheeccccc
Confidence 75 688888889999999754
No 165
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=3.1e-19 Score=156.40 Aligned_cols=245 Identities=23% Similarity=0.341 Sum_probs=169.3
Q ss_pred EEEEcCCCC-EEEEee----------CCCcEEEEecCC--C--ceeeeeeecCCCCCeeEEEEcCCCCE----EEEecCC
Q 023500 8 SCAWSPSGK-LLATAS----------FDATTCIWEDVG--G--DYECVATLEGHENEVKSVSWNASGTL----LATCGRD 68 (281)
Q Consensus 8 ~~~~~~~~~-~l~tg~----------~d~~i~lw~~~~--~--~~~~~~~~~~h~~~v~~v~~~~~~~~----l~s~~~d 68 (281)
.++|+|.+. ++|+|. .+.++.||.... . +.+.+..+. -....+.++|.+.|.. |+.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 478999887 565553 345566775422 1 122333333 3456789999887665 8889999
Q ss_pred CcEEEEEecC---CCeeEEeEeecCCccceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccc
Q 023500 69 KSVWIWEVMP---GNEFECVSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSS 144 (281)
Q Consensus 69 ~~v~~w~~~~---~~~~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~ 144 (281)
|.|-+||... +.+.+.+.....|.+.|..+.|+|... ++++|+.||.|.|||+...... . ... .....+
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP-~----~~~--~~~~~~ 162 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETP-F----TPG--SQAPPS 162 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCC-C----CCC--CCCCcc
Confidence 9999999754 333445566778999999999999765 9999999999999999864321 1 010 112457
Q ss_pred cEEEEEEccC-CCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecc-cCcceEEEEeCCCc--eeeecCCC---
Q 023500 145 TIWALSFNAK-GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGY-HDRTIFSVHWSREG--IIASGAAD--- 217 (281)
Q Consensus 145 ~v~~~~~~~~-~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--~~~~~~~d--- 217 (281)
.|.+++|+.. ...|++++.+|.+.|||++..++.. .++.. ....+..++|+|+. .+++++.|
T Consensus 163 eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii-----------~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~ 231 (1049)
T KOG0307|consen 163 EIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPII-----------KLSDTPGRMHCSVLAWHPDHATQLLVASGDDSA 231 (1049)
T ss_pred cceEeccchhhhHHhhccCCCCCceeccccCCCccc-----------ccccCCCccceeeeeeCCCCceeeeeecCCCCC
Confidence 8999999864 4579999999999999987543221 11111 11335678999975 34444433
Q ss_pred CcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 218 DSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
..+.+|+.+-.. .. .+...+|+..|.++.|++.+..+++|++.|+.+..|+..+
T Consensus 232 PviqlWDlR~as----sP----~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t 285 (1049)
T KOG0307|consen 232 PVIQLWDLRFAS----SP----LKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT 285 (1049)
T ss_pred ceeEeecccccC----Cc----hhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCC
Confidence 367888654221 11 2234689999999999999878899999999999999765
No 166
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.80 E-value=2.3e-18 Score=138.94 Aligned_cols=217 Identities=17% Similarity=0.273 Sum_probs=161.7
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEe
Q 023500 8 SCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSV 87 (281)
Q Consensus 8 ~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~ 87 (281)
|++......++++|+..+.++|||.... .+...+++|...|+++.++....+||+++..|.|.+..+..... ...
T Consensus 84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k--l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~---tt~ 158 (673)
T KOG4378|consen 84 CVACASQSLYEISGGQSGCVKIWDLRAK--LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK---TTT 158 (673)
T ss_pred HHhhhhcceeeeccCcCceeeehhhHHH--HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc---ccc
Confidence 4444445578999999999999998632 35667889999999999999999999999999999999876542 222
Q ss_pred ecCC-ccceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCC-EEEEeeCC
Q 023500 88 LQGH-AQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD-KLVSCSDD 164 (281)
Q Consensus 88 ~~~~-~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d 164 (281)
+.-. ...|+-+.|+|... +|.+++.+|.|.+||+..... .......|.++...++|+|..+ +|++.+.|
T Consensus 159 f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp--------~~~~~~~HsAP~~gicfspsne~l~vsVG~D 230 (673)
T KOG4378|consen 159 FTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP--------IFHASEAHSAPCRGICFSPSNEALLVSVGYD 230 (673)
T ss_pred eecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc--------ccchhhhccCCcCcceecCCccceEEEeccc
Confidence 2221 33467899999877 577899999999999875421 1112347889999999999754 78899999
Q ss_pred CcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce-eeecCCCCcEEEEecccCCCcCCccceeeeeec
Q 023500 165 LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKE 243 (281)
Q Consensus 165 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (281)
..|.+||+...+.. ..+ ..+.+..+++|.++|. +++|...|.+..|+++.. +. -+...
T Consensus 231 kki~~yD~~s~~s~-----------~~l--~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~-----k~---Pv~v~ 289 (673)
T KOG4378|consen 231 KKINIYDIRSQAST-----------DRL--TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRST-----KA---PVAVR 289 (673)
T ss_pred ceEEEeeccccccc-----------cee--eecCCcceeeecCCceEEEeecCCceEEEEecccC-----CC---CceEe
Confidence 99999998633211 111 1356788899999885 677888999999977542 11 12334
Q ss_pred cCCCCCeeEEEEcCC
Q 023500 244 KAHDMDVNSVQWSPG 258 (281)
Q Consensus 244 ~~h~~~v~~~~~~~~ 258 (281)
..|...|++++|.|.
T Consensus 290 sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 290 SAHDASVTRVAFQPS 304 (673)
T ss_pred eecccceeEEEeeec
Confidence 578888999999984
No 167
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.80 E-value=1.4e-17 Score=139.87 Aligned_cols=254 Identities=18% Similarity=0.277 Sum_probs=177.4
Q ss_pred CCccceeEEEEcCC-----------CCEEEEeeCCCcEEEEecCCC---ce--------eeee-----------------
Q 023500 1 MHTRTVRSCAWSPS-----------GKLLATASFDATTCIWEDVGG---DY--------ECVA----------------- 41 (281)
Q Consensus 1 ~h~~~i~~~~~~~~-----------~~~l~tg~~d~~i~lw~~~~~---~~--------~~~~----------------- 41 (281)
+|...|+.+.--|- ..-|.|++.|++|+||+.... +. ..++
T Consensus 367 yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~ 446 (1080)
T KOG1408|consen 367 YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAG 446 (1080)
T ss_pred eccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCC
Confidence 46667777765551 124789999999999986431 00 0000
Q ss_pred -------eecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecC-C--CCeEEEEe
Q 023500 42 -------TLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP-T--MDVLFSCS 111 (281)
Q Consensus 42 -------~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~--~~~l~s~s 111 (281)
..-+..-.+.+++.+|+|++|++|..-|+++|++++.-.. .....+|..+|.|+.|+- . ..+|++++
T Consensus 447 ~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~---~~~~eAHesEilcLeyS~p~~~~kLLASas 523 (1080)
T KOG1408|consen 447 IFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY---TCFMEAHESEILCLEYSFPVLTNKLLASAS 523 (1080)
T ss_pred cccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhh---hhheecccceeEEEeecCchhhhHhhhhcc
Confidence 0012334688999999999999999999999999975543 445679999999999984 2 45899999
Q ss_pred cCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCC--CEEEEeeCCCcEEEEeCCccccccCCCCccccee
Q 023500 112 YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG--DKLVSCSDDLTIKIWGADITRMQSGDGYASWRHL 189 (281)
Q Consensus 112 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 189 (281)
.|.-|.++|+.+.- .+.+...+|...|+++.|-..+ ..+++|+.|..|.+ +..-+ ...+..-.+..
T Consensus 524 rdRlIHV~Dv~rny--------~l~qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk---~~~g~~f~r~t 591 (1080)
T KOG1408|consen 524 RDRLIHVYDVKRNY--------DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQK---ASSGRLFPRHT 591 (1080)
T ss_pred CCceEEEEeccccc--------chhhhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhcc---ccCceeccccc
Confidence 99999999987641 1223345899999999998776 68999999986643 32210 01111000111
Q ss_pred EEeecccCcceEEEEeCCC-ceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCC
Q 023500 190 CTISGYHDRTIFSVHWSRE-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASD 268 (281)
Q Consensus 190 ~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~ 268 (281)
.. ....++..+...|. +++++++.|+.+++|+...+ +.. ..++....|++..-.+...|.+- ++++...
T Consensus 592 ~t---~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sg-----Kq~-k~FKgs~~~eG~lIKv~lDPSgi-Y~atScs 661 (1080)
T KOG1408|consen 592 QT---LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESG-----KQV-KSFKGSRDHEGDLIKVILDPSGI-YLATSCS 661 (1080)
T ss_pred cc---cccceEEEeeeCCCcceEEEEecccceEEEecccc-----cee-eeecccccCCCceEEEEECCCcc-EEEEeec
Confidence 11 12356677888875 68999999999999976543 222 23455677888888899999774 5778888
Q ss_pred CCeEEEEEccc
Q 023500 269 DGMIKIWELAN 279 (281)
Q Consensus 269 Dg~v~iw~~~~ 279 (281)
|.+|.++|+.+
T Consensus 662 dktl~~~Df~s 672 (1080)
T KOG1408|consen 662 DKTLCFVDFVS 672 (1080)
T ss_pred CCceEEEEecc
Confidence 99999999764
No 168
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.78 E-value=8.1e-18 Score=139.64 Aligned_cols=156 Identities=21% Similarity=0.401 Sum_probs=118.9
Q ss_pred EcCCCCEEEE--eeCCCcEEEEecCCCceeeeeeecC--CCCCeeEEEEcC-CCCEEEEecCCCcEEEEEecCCC----e
Q 023500 11 WSPSGKLLAT--ASFDATTCIWEDVGGDYECVATLEG--HENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGN----E 81 (281)
Q Consensus 11 ~~~~~~~l~t--g~~d~~i~lw~~~~~~~~~~~~~~~--h~~~v~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~~----~ 81 (281)
|+.+.+++|. .+..|.|.||+.+..-..+-..+.+ ....|+.+.|+| |..+|+.+++|+.|++|.+..+. +
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~ 666 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE 666 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCccc
Confidence 4445555543 3456899999976432111111111 346789999999 78899999999999999987543 2
Q ss_pred eEEeEeecCCccceeEEEecCC-CCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEE
Q 023500 82 FECVSVLQGHAQDVKMVQWHPT-MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~-~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
..+...++.|.+.|+++.|||- .++|++++.|.+|++||+..... .-...+|++.|..++|+|+|+.+++
T Consensus 667 ~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~---------~~~l~gHtdqIf~~AWSpdGr~~At 737 (1012)
T KOG1445|consen 667 MTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKL---------YSRLVGHTDQIFGIAWSPDGRRIAT 737 (1012)
T ss_pred CCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhh---------hheeccCcCceeEEEECCCCcceee
Confidence 3345678899999999999996 56899999999999999876532 1123489999999999999999999
Q ss_pred eeCCCcEEEEeCCcc
Q 023500 161 CSDDLTIKIWGADIT 175 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~ 175 (281)
.+.||++++|....+
T Consensus 738 VcKDg~~rVy~Prs~ 752 (1012)
T KOG1445|consen 738 VCKDGTLRVYEPRSR 752 (1012)
T ss_pred eecCceEEEeCCCCC
Confidence 999999999976644
No 169
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.78 E-value=2.8e-15 Score=126.46 Aligned_cols=245 Identities=28% Similarity=0.529 Sum_probs=176.5
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCC-CCeeEEEE-cCCCC-EEEEecC-CCcEEEEEec
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHE-NEVKSVSW-NASGT-LLATCGR-DKSVWIWEVM 77 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~-~~v~~v~~-~~~~~-~l~s~~~-d~~v~~w~~~ 77 (281)
|...|..+.+.+.+..++.++.|+.+.+|+..... ..+..+.++. ..+..+.+ ++++. .++..+. |+.+++|++.
T Consensus 64 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 142 (466)
T COG2319 64 HEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE-KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLS 142 (466)
T ss_pred ccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc-eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEec
Confidence 67889999999999999999999999999987664 2344555534 36777777 88887 5555444 9999999986
Q ss_pred CCCeeEEeEeecCCccceeEEEecCCCCeEEEEec-CCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCC
Q 023500 78 PGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY-DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD 156 (281)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~-d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 156 (281)
.. ......+..|...|..++|+|++..+++++. |+.+++|+..... .+..+ .+|...|.+++|+|++.
T Consensus 143 ~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~----~~~~~~v~~~~~~~~~~ 211 (466)
T COG2319 143 TP--GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK-----PLSTL----AGHTDPVSSLAFSPDGG 211 (466)
T ss_pred CC--CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc-----eEEee----ccCCCceEEEEEcCCcc
Confidence 51 1345667889999999999999998888886 9999999876521 12222 34888999999999987
Q ss_pred -EEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCc
Q 023500 157 -KLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGP 234 (281)
Q Consensus 157 -~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~ 234 (281)
.+++++.|+.+++||....... ......|.... ...+++++ .+++++.|+.+++|+......
T Consensus 212 ~~~~~~~~d~~i~~wd~~~~~~~-----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---- 275 (466)
T COG2319 212 LLIASGSSDGTIRLWDLSTGKLL-----------RSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS---- 275 (466)
T ss_pred eEEEEecCCCcEEEEECCCCcEE-----------eeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc----
Confidence 6666699999999966522111 10111233332 22667765 777899999999997754211
Q ss_pred cceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 235 SYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 235 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
..... ..|...+.++.|+|++.. +++++.|+.+++|+...
T Consensus 276 ---~~~~~-~~~~~~v~~~~~~~~~~~-~~~~~~d~~~~~~~~~~ 315 (466)
T COG2319 276 ---LLRTL-SGHSSSVLSVAFSPDGKL-LASGSSDGTVRLWDLET 315 (466)
T ss_pred ---EEEEE-ecCCccEEEEEECCCCCE-EEEeeCCCcEEEEEcCC
Confidence 11111 567889999999996655 45588888899998754
No 170
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.77 E-value=9.9e-19 Score=148.82 Aligned_cols=237 Identities=24% Similarity=0.389 Sum_probs=171.4
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|.|+.|...|.+++||+.|..++||...+. .+++...||.+.|+.++.+.+..+++++|.|.-|++|.++.+.
T Consensus 189 H~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~--~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~- 265 (1113)
T KOG0644|consen 189 HRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA--RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA- 265 (1113)
T ss_pred hhhheeeeeeccccceEeecCccceeeeeeccch--hhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCc-
Confidence 6677999999999999999999999999986655 4789999999999999998888899999999999999997664
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
++.++.+|.+.|++++|+|- .+.+.||++++||..-. +...+...... .....+-++.|-..+..++|+
T Consensus 266 --pvsvLrghtgavtaiafsP~----~sss~dgt~~~wd~r~~---~~~y~prp~~~--~~~~~~~s~~~~~~~~~f~Tg 334 (1113)
T KOG0644|consen 266 --PVSVLRGHTGAVTAIAFSPR----ASSSDDGTCRIWDARLE---PRIYVPRPLKF--TEKDLVDSILFENNGDRFLTG 334 (1113)
T ss_pred --hHHHHhccccceeeeccCcc----ccCCCCCceEecccccc---ccccCCCCCCc--ccccceeeeeccccccccccc
Confidence 47789999999999999996 48899999999976521 11111111111 112556677888888899999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeC--CCceeeecCCCCcEEEEecccCCCcCCccceee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS--REGIIASGAADDSVQFFVESKDDLIDGPSYKML 239 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 239 (281)
+.|+.-+.|...... ++.. .+.-+..+ -+.++++.-.+-.+.+|.... + .+
T Consensus 335 s~d~ea~n~e~~~l~---------~~~~---------~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~-----g----~l 387 (1113)
T KOG0644|consen 335 SRDGEARNHEFEQLA---------WRSN---------LLIFVTRSSDLSSIVVTARNDHRLCVWNLYT-----G----QL 387 (1113)
T ss_pred cCCcccccchhhHhh---------hhcc---------ceEEEeccccccccceeeeeeeEeeeeeccc-----c----hh
Confidence 999998888543211 1100 00000000 112333333344455563322 1 12
Q ss_pred eeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 240 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 240 ~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
.....+|...+..+.++|.++++..+++.||...|||+..
T Consensus 388 ~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~e 427 (1113)
T KOG0644|consen 388 LHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWE 427 (1113)
T ss_pred hhhhcccccceeeeeecCCCcHhhhhccCCCceEeeeccc
Confidence 2334578889999999999998888999999999999754
No 171
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.77 E-value=2.4e-17 Score=137.67 Aligned_cols=235 Identities=21% Similarity=0.353 Sum_probs=163.8
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|.+.|.|++|+.||+++|+|+.|..+.+|...- +-+-.+ .|.+.|.|+.|+|-.+.|+|++-. ..-+|+.....
T Consensus 52 HKDtVycVAys~dGkrFASG~aDK~VI~W~~kl---EG~LkY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~- 125 (1081)
T KOG1538|consen 52 HKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL---EGILKY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS- 125 (1081)
T ss_pred ccceEEEEEEccCCceeccCCCceeEEEecccc---cceeee-ccCCeeeEeecCchHHHhhhcchh-hccccChhhhh-
Confidence 889999999999999999999999999997532 112232 499999999999999999998863 24568653221
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCC-----C
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG-----D 156 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-----~ 156 (281)
+.. ......|.+++|.-+|++++.|-.+|+|.+-+-...+ ...++. ..|..++|++++|+|.. +
T Consensus 126 ---V~K-~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEe------k~~I~R-pgg~Nspiwsi~~~p~sg~G~~d 194 (1081)
T KOG1538|consen 126 ---VSK-HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEE------KVKIER-PGGSNSPIWSICWNPSSGEGRND 194 (1081)
T ss_pred ---HHh-hhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCc------ceEEeC-CCCCCCCceEEEecCCCCCCccc
Confidence 100 1124568899999999999999999999986332211 112222 23567899999999853 4
Q ss_pred EEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCcc
Q 023500 157 KLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPS 235 (281)
Q Consensus 157 ~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~ 235 (281)
.++......++.++.+...... .+ + ..+-...|+++.++| +++.|+.|+-+.+|--..
T Consensus 195 i~aV~DW~qTLSFy~LsG~~Ig-k~-----r-------~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G-------- 253 (1081)
T KOG1538|consen 195 ILAVADWGQTLSFYQLSGKQIG-KD-----R-------ALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG-------- 253 (1081)
T ss_pred eEEEEeccceeEEEEecceeec-cc-----c-------cCCCCchhheeccCCcEEEEccCCCceEEEeecC--------
Confidence 6777888888888865422110 00 0 012234567767666 678899999999994322
Q ss_pred ceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 236 YKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 236 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
..+........+|+.++..|+++ .++.|..||+|--|++
T Consensus 254 --vrLGTvg~~D~WIWtV~~~PNsQ-~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 254 --VRLGTVGEQDSWIWTVQAKPNSQ-YVVVGCQDGTIACYNL 292 (1081)
T ss_pred --eEEeeccccceeEEEEEEccCCc-eEEEEEccCeeehhhh
Confidence 12222333567899999999876 5778889999877664
No 172
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.77 E-value=3e-17 Score=125.98 Aligned_cols=226 Identities=22% Similarity=0.314 Sum_probs=151.3
Q ss_pred CCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCC---eeEEEEcCCCCEEEEecCCCcEEEEEec-CCCeeEEeEee
Q 023500 13 PSGKLLATASFDATTCIWEDVGGDYECVATLEGHENE---VKSVSWNASGTLLATCGRDKSVWIWEVM-PGNEFECVSVL 88 (281)
Q Consensus 13 ~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~---v~~v~~~~~~~~l~s~~~d~~v~~w~~~-~~~~~~~~~~~ 88 (281)
|+..++|+.+.|.-|.+||..+++..+....-.|.++ ..+++|+|||.+|++| ..+.|+++|+. ++.. ......
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~-c~vy~t 198 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRD-CPVYTT 198 (406)
T ss_pred CccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCC-Ccchhh
Confidence 5667999999999999999988876554443335443 4689999999999886 45899999994 4432 122222
Q ss_pred c-----CCccceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee
Q 023500 89 Q-----GHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS 162 (281)
Q Consensus 89 ~-----~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 162 (281)
. +....+.|++|+|... .++.++....+-|+.-... .....+ .+|.+.|+.++|.++|..|.+|.
T Consensus 199 ~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-----~pl~ll----ggh~gGvThL~~~edGn~lfsGa 269 (406)
T KOG2919|consen 199 VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-----RPLQLL----GGHGGGVTHLQWCEDGNKLFSGA 269 (406)
T ss_pred hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC-----Cceeee----cccCCCeeeEEeccCcCeecccc
Confidence 2 3367789999999765 7899999888887733221 122222 38999999999999999999987
Q ss_pred C-CCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEE--EeCCCc-eeeecCCCCcEEEEecccCCCcCCcccee
Q 023500 163 D-DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSV--HWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKM 238 (281)
Q Consensus 163 ~-d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 238 (281)
+ |..|..||++......- .+... .+.+-..| ...+++ .+++|+.+|.+++|+.+.-..
T Consensus 270 Rk~dkIl~WDiR~~~~pv~-------~L~rh---v~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn-------- 331 (406)
T KOG2919|consen 270 RKDDKILCWDIRYSRDPVY-------ALERH---VGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN-------- 331 (406)
T ss_pred cCCCeEEEEeehhccchhh-------hhhhh---ccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC--------
Confidence 5 67899999863321100 00000 01111222 234544 677788999999998865211
Q ss_pred eeeeccCCCCCeeEEEEcCCCCeeEEEeCC
Q 023500 239 LLKKEKAHDMDVNSVQWSPGERRLLASASD 268 (281)
Q Consensus 239 ~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~ 268 (281)
.......|+..++.++++|- -.++|+++.
T Consensus 332 ~~sv~~~~sd~vNgvslnP~-mpilatssG 360 (406)
T KOG2919|consen 332 EVSVTGNYSDTVNGVSLNPI-MPILATSSG 360 (406)
T ss_pred cccccccccccccceecCcc-cceeeeccC
Confidence 01122356778999999996 456777664
No 173
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.77 E-value=3.3e-16 Score=133.56 Aligned_cols=261 Identities=21% Similarity=0.308 Sum_probs=186.1
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCE-EEEecCCCcEEEEEecCCCe
Q 023500 3 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL-LATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-l~s~~~d~~v~~w~~~~~~~ 81 (281)
...|+++.-+|--..+|.|..+|.|.|++...++ .+.+++.-.+.|+.++|..||+- +++|+..|.+-+||+...+
T Consensus 202 ~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dk--il~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kk- 278 (910)
T KOG1539|consen 202 FSRITAIEQSPALDVVAIGLENGTVIIFNLKFDK--ILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKK- 278 (910)
T ss_pred ccceeEeccCCcceEEEEeccCceEEEEEcccCc--EEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCe-
Confidence 3679999999999999999999999999987765 46677733599999999999875 6777778999999996443
Q ss_pred eEEeEe-ecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEc-cCCCEEE
Q 023500 82 FECVSV-LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN-AKGDKLV 159 (281)
Q Consensus 82 ~~~~~~-~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~ 159 (281)
.+.. ...|...+..+.|-|....+++++.|+.+++|-.+..+-. .++...-.||.++..+++|. .++..+.
T Consensus 279 --l~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~-----pR~LR~R~GHs~Pp~~irfy~~~g~~il 351 (910)
T KOG1539|consen 279 --LINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGV-----PRLLRSRGGHSAPPSCIRFYGSQGHFIL 351 (910)
T ss_pred --eeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCc-----chheeeccCCCCCchheeeeccCcEEEE
Confidence 2233 3478888999999999999999999999999977654322 22333446899999999998 6788999
Q ss_pred EeeCCCcEEEEeCCccccccC------------CCC--------c-------------ccceeEE---------------
Q 023500 160 SCSDDLTIKIWGADITRMQSG------------DGY--------A-------------SWRHLCT--------------- 191 (281)
Q Consensus 160 s~~~d~~i~~w~~~~~~~~~~------------~~~--------~-------------~~~~~~~--------------- 191 (281)
+.+.|++++.+++....+... .+. + .|..+..
T Consensus 352 sa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n 431 (910)
T KOG1539|consen 352 SAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRN 431 (910)
T ss_pred ecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccC
Confidence 999999999886421110000 000 0 0100000
Q ss_pred -------eecc----cCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCC
Q 023500 192 -------ISGY----HDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGE 259 (281)
Q Consensus 192 -------~~~~----~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 259 (281)
+... .+..+.+++.++.| +.+.|.+.|.+.+|....+ ...+ .+.....|..+|+.++...-+
T Consensus 432 ~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSG-----i~r~-sf~~~~ah~~~V~gla~D~~n 505 (910)
T KOG1539|consen 432 KTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSG-----IHRK-SFGDSPAHKGEVTGLAVDGTN 505 (910)
T ss_pred cccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccC-----eeec-ccccCccccCceeEEEecCCC
Confidence 0000 12344566666654 5667778899999966542 1111 122346899999999998766
Q ss_pred CeeEEEeCCCCeEEEEEcccC
Q 023500 260 RRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 260 ~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
+ ++++++.||.+++||+...
T Consensus 506 ~-~~vsa~~~Gilkfw~f~~k 525 (910)
T KOG1539|consen 506 R-LLVSAGADGILKFWDFKKK 525 (910)
T ss_pred c-eEEEccCcceEEEEecCCc
Confidence 4 6789999999999998754
No 174
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=4.8e-17 Score=128.78 Aligned_cols=159 Identities=19% Similarity=0.222 Sum_probs=108.9
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeE
Q 023500 7 RSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVS 86 (281)
Q Consensus 7 ~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~ 86 (281)
.+++|+++|..|++|+.||.+++|+..... .+.....|.++|.++.|+|||.+|++-+.| ..+||+...+..... .
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~--t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~-~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML--TILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALAR-K 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcch--hhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhh-c
Confidence 578999999999999999999999843322 244556799999999999999999999999 899999987732211 1
Q ss_pred eecCCccceeEEEecCCC---CeE--EEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 87 VLQGHAQDVKMVQWHPTM---DVL--FSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 87 ~~~~~~~~v~~v~~~p~~---~~l--~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
+..........+.|+-+. .+. +....-+.|+.|++..-.-. .+....+.... ...+.+++.+++|++++.|
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~---~~l~~~~~~~~-~~siSsl~VS~dGkf~AlG 299 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS---NFLRLRKKIKR-FKSISSLAVSDDGKFLALG 299 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc---cccchhhhhhc-cCcceeEEEcCCCcEEEEe
Confidence 112223345566676655 332 33333456676655322111 01111111112 2468999999999999999
Q ss_pred eCCCcEEEEeCC
Q 023500 162 SDDLTIKIWGAD 173 (281)
Q Consensus 162 ~~d~~i~~w~~~ 173 (281)
+.||.|.+++..
T Consensus 300 T~dGsVai~~~~ 311 (398)
T KOG0771|consen 300 TMDGSVAIYDAK 311 (398)
T ss_pred ccCCcEEEEEec
Confidence 999999999753
No 175
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.76 E-value=1.1e-14 Score=122.81 Aligned_cols=243 Identities=31% Similarity=0.583 Sum_probs=172.5
Q ss_pred CccceeEEEEcCCCCEEEEeeC-CCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCC-EEEEecCCCcEEEEEecCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASF-DATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT-LLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~-d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~v~~w~~~~~ 79 (281)
|...|..++|+|++++++.++. |+.+++|+.... ..+..+.+|...|.+++|+|++. .+++++.|+.+++||...+
T Consensus 154 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~ 231 (466)
T COG2319 154 HSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG--KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG 231 (466)
T ss_pred CcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC--ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC
Confidence 7788999999999999888885 999999998764 34667778999999999999998 5666699999999987633
Q ss_pred CeeEEeE-eecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEE
Q 023500 80 NEFECVS-VLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158 (281)
Q Consensus 80 ~~~~~~~-~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 158 (281)
. ... .+.+|.... ...|+|++..+++++.|+.+++|+...... ....+ .+|...+.++.|+|++..+
T Consensus 232 ~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----~~~~~----~~~~~~v~~~~~~~~~~~~ 299 (466)
T COG2319 232 K---LLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS----LLRTL----SGHSSSVLSVAFSPDGKLL 299 (466)
T ss_pred c---EEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc----EEEEE----ecCCccEEEEEECCCCCEE
Confidence 3 233 577787765 448999998889999999999998875432 11112 3678889999999988888
Q ss_pred EEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC-ceeeec-CCCCcEEEEecccCCCcCCccc
Q 023500 159 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE-GIIASG-AADDSVQFFVESKDDLIDGPSY 236 (281)
Q Consensus 159 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~-~~d~~~~~~~~~~~~~~~~~~~ 236 (281)
++++.|+.+++|+........ ... ...+...+..+.+.++ ..++.+ ..|+.+++|......
T Consensus 300 ~~~~~d~~~~~~~~~~~~~~~---------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~------- 362 (466)
T COG2319 300 ASGSSDGTVRLWDLETGKLLS---------SLT-LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK------- 362 (466)
T ss_pred EEeeCCCcEEEEEcCCCceEE---------Eee-ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc-------
Confidence 889989899999765332110 000 1124445777777333 234444 577888888654321
Q ss_pred eeeeeeccCCCCCeeEEEEcCCCCeeEEE-eCCCCeEEEEEcccC
Q 023500 237 KMLLKKEKAHDMDVNSVQWSPGERRLLAS-ASDDGMIKIWELANT 280 (281)
Q Consensus 237 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~s-~~~Dg~v~iw~~~~~ 280 (281)
.......+ ..+..+.+.+ . ..+.+ ++.++.+.+|+....
T Consensus 363 --~~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~ 402 (466)
T COG2319 363 --PLKTLEGH-SNVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTG 402 (466)
T ss_pred --eeEEecCC-ceEEEEEECC-C-CCEEEEecCCCceEEEecccC
Confidence 11111111 1278899988 6 44544 788999999997653
No 176
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.76 E-value=3e-17 Score=133.74 Aligned_cols=205 Identities=21% Similarity=0.348 Sum_probs=144.0
Q ss_pred CEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccce
Q 023500 16 KLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDV 95 (281)
Q Consensus 16 ~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v 95 (281)
+.|+.++.||.+.|-+... +. -..+++|.+.+.|-.|+|+|.-|+|+|.||.|++|.-. + ....++......|
T Consensus 76 d~~~i~s~DGkf~il~k~~-rV--E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-G---MLRStl~Q~~~~v 148 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSA-RV--ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-G---MLRSTVVQNEESI 148 (737)
T ss_pred ceEEEEcCCceEEEecccc-hh--hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-c---hHHHHHhhcCcee
Confidence 4678889999998875443 22 24667899999999999999999999999999999732 1 1122344456789
Q ss_pred eEEEecCCCCeEEEEecC-CeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCc
Q 023500 96 KMVQWHPTMDVLFSCSYD-NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI 174 (281)
Q Consensus 96 ~~v~~~p~~~~l~s~s~d-~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~ 174 (281)
+|++|.|+.+.++-+..+ -.|+-...+. .+ +. =++|.+.|.+++|++..+.+++|+.|-..++||...
T Consensus 149 ~c~~W~p~S~~vl~c~g~h~~IKpL~~n~-------k~--i~--WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G 217 (737)
T KOG1524|consen 149 RCARWAPNSNSIVFCQGGHISIKPLAANS-------KI--IR--WRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG 217 (737)
T ss_pred EEEEECCCCCceEEecCCeEEEeeccccc-------ce--eE--EeccCcEEEEeecCccccceeecCCceeEEeecccC
Confidence 999999998755443332 2333221111 01 11 137999999999999999999999999999998642
Q ss_pred cccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEE
Q 023500 175 TRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQ 254 (281)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 254 (281)
.. +.. +..|+.+|++++|.|+..++.++.+ .+|+ .....+.|-.++
T Consensus 218 ~~------------Lf~-S~~~ey~ITSva~npd~~~~v~S~n-t~R~--------------------~~p~~GSifnls 263 (737)
T KOG1524|consen 218 AN------------LFT-SAAEEYAITSVAFNPEKDYLLWSYN-TARF--------------------SSPRVGSIFNLS 263 (737)
T ss_pred cc------------ccc-CChhccceeeeeeccccceeeeeee-eeee--------------------cCCCccceEEEE
Confidence 21 111 1247899999999999767665543 3331 122345688899
Q ss_pred EcCCCCeeEEEeCCCCeEE
Q 023500 255 WSPGERRLLASASDDGMIK 273 (281)
Q Consensus 255 ~~~~~~~~~~s~~~Dg~v~ 273 (281)
|+++|.+ +++|...|.|.
T Consensus 264 WS~DGTQ-~a~gt~~G~v~ 281 (737)
T KOG1524|consen 264 WSADGTQ-ATCGTSTGQLI 281 (737)
T ss_pred EcCCCce-eeccccCceEE
Confidence 9999975 66776677653
No 177
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.76 E-value=9.2e-17 Score=121.59 Aligned_cols=231 Identities=19% Similarity=0.311 Sum_probs=158.4
Q ss_pred CCCcEEEEecCCC-ceeeeeeecCCCCCeeEEEEcCC-CCEEEEecCC-------CcEEEEEecCCC------eeEEeEe
Q 023500 23 FDATTCIWEDVGG-DYECVATLEGHENEVKSVSWNAS-GTLLATCGRD-------KSVWIWEVMPGN------EFECVSV 87 (281)
Q Consensus 23 ~d~~i~lw~~~~~-~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d-------~~v~~w~~~~~~------~~~~~~~ 87 (281)
.|+.|.+-+.... .....+.+..|.++|+.++-+|. .+.|+|+-.| ..+.+|.+.... ..+++..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 4566666544322 22234567778899999999995 4555554332 356799985332 1233334
Q ss_pred ec-CCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeee-eccCCccccEEEEEEcc--CCCEEEEeeC
Q 023500 88 LQ-GHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTIS-ESNNGHSSTIWALSFNA--KGDKLVSCSD 163 (281)
Q Consensus 88 ~~-~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~--~~~~l~s~~~ 163 (281)
+. .+-..|.|+.|.|++..+++-. |..|.+|+++..... +..+. .....++...++-+|+| ++..+++ ..
T Consensus 118 Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~----vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~ 191 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKI----VAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TS 191 (370)
T ss_pred CCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcch----heeecccccccccceecccccCCCCccceEEE-eC
Confidence 43 4455899999999988888765 899999988765321 11111 11123566788889998 5555655 46
Q ss_pred CCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC--ceeeecCCCCcEEEEecccCCCcCCccceeeee
Q 023500 164 DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE--GIIASGAADDSVQFFVESKDDLIDGPSYKMLLK 241 (281)
Q Consensus 164 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 241 (281)
|+++..||.+.-. ....+...|...++.+.|.|+ .++++++.|+.+++|+.++- +.-+.
T Consensus 192 d~tl~~~D~RT~~-----------~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t--------k~pv~ 252 (370)
T KOG1007|consen 192 DSTLQFWDLRTMK-----------KNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT--------KFPVQ 252 (370)
T ss_pred CCcEEEEEccchh-----------hhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC--------Ccccc
Confidence 8899999986321 122333457888999999986 47999999999999977642 12234
Q ss_pred eccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 242 KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 242 ~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
....|..+|+++.|+|.-.++++++|.|..|.+|-..
T Consensus 253 el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~ 289 (370)
T KOG1007|consen 253 ELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCAS 289 (370)
T ss_pred ccCCCceEEEEEEecCccceEEEecCCCceeEEEecc
Confidence 5568999999999999777899999999999998653
No 178
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=6e-16 Score=118.57 Aligned_cols=251 Identities=16% Similarity=0.256 Sum_probs=159.3
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCC-EEEEecCCCcEEEEEecCCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT-LLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~v~~w~~~~~~ 80 (281)
|..+|.+++|+++|+.|+|+|.|..|.+||+..+. +++.+. ...+|+.+.|+|..+ ..+..=.+..-.+-++.+..
T Consensus 64 H~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs--~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~ 140 (405)
T KOG1273|consen 64 HVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS--PLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK 140 (405)
T ss_pred cccceeEEEecCCCCEeeeecCCceeEEEeccCCC--ceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCc
Confidence 78999999999999999999999999999998776 466655 779999999999554 44444455555556654321
Q ss_pred eeEEeEee-cC-CccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEE
Q 023500 81 EFECVSVL-QG-HAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158 (281)
Q Consensus 81 ~~~~~~~~-~~-~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 158 (281)
. .++..- .+ -.....+..|.+.++++++|...|.+.+++.++. +++..+... ....|..+.|+..++.|
T Consensus 141 h-~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~-----e~vas~rit---s~~~IK~I~~s~~g~~l 211 (405)
T KOG1273|consen 141 H-SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL-----ECVASFRIT---SVQAIKQIIVSRKGRFL 211 (405)
T ss_pred e-eeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchh-----eeeeeeeec---hheeeeEEEEeccCcEE
Confidence 1 010000 00 0111223358899999999999999999987764 244333211 12568889999999999
Q ss_pred EEeeCCCcEEEEeCCc-cccccCCCCcccceeEEeecc-cCcceEEEEeCCCceeeecCCC--CcEEEEecccCCCcCCc
Q 023500 159 VSCSDDLTIKIWGADI-TRMQSGDGYASWRHLCTISGY-HDRTIFSVHWSREGIIASGAAD--DSVQFFVESKDDLIDGP 234 (281)
Q Consensus 159 ~s~~~d~~i~~w~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~d--~~~~~~~~~~~~~~~~~ 234 (281)
+.-+.|..||.|+..- ..+....... +...+... ....=.+++|+.+|.++.+++. -.+++|....+
T Consensus 212 iiNtsDRvIR~ye~~di~~~~r~~e~e---~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G------ 282 (405)
T KOG1273|consen 212 IINTSDRVIRTYEISDIDDEGRDGEVE---PEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG------ 282 (405)
T ss_pred EEecCCceEEEEehhhhcccCccCCcC---hhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCc------
Confidence 9999999999998651 1110110100 00000000 0112245677777765544443 36677744332
Q ss_pred cceeeeeeccCCC-CCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 235 SYKMLLKKEKAHD-MDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 235 ~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
.+++...+-. ....++.|+|-- .++++- .-|.++||...
T Consensus 283 ---sLVKILhG~kgE~l~DV~whp~r-p~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 283 ---SLVKILHGTKGEELLDVNWHPVR-PIIASI-ASGVVYIWAVV 322 (405)
T ss_pred ---ceeeeecCCchhheeecccccce-eeeeec-cCCceEEEEee
Confidence 2333333443 457789999964 355555 67999999864
No 179
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=3.9e-16 Score=128.76 Aligned_cols=223 Identities=25% Similarity=0.436 Sum_probs=141.9
Q ss_pred eeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCe-EEEEecCCeE
Q 023500 38 ECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDV-LFSCSYDNTI 116 (281)
Q Consensus 38 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~-l~s~s~d~~v 116 (281)
.|...+.||++.|.||+..|.|.+|++||+||+|++|.+..+. |++++. -.+.|+||+|+|.... +++++.+..+
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgR---cvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~ 466 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGR---CVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECV 466 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecce---EEEEEe-ecceeEEEEecCCCCceeEEEEecCce
Confidence 3456778999999999999999999999999999999998775 555543 2457999999998763 4444445556
Q ss_pred EEEeCCCCC-----------------CC------Cceee--eeee---eccCCccccEEEEEEccCCCEEEEeeCCC---
Q 023500 117 KVWWAEDTD-----------------SD------NWHCV--QTIS---ESNNGHSSTIWALSFNAKGDKLVSCSDDL--- 165 (281)
Q Consensus 117 ~~w~~~~~~-----------------~~------~~~~~--~~~~---~~~~~h~~~v~~~~~~~~~~~l~s~~~d~--- 165 (281)
.+-+..-++ .. .|... ...+ .....|...|..+.||..|+||++...++
T Consensus 467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~ 546 (733)
T KOG0650|consen 467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNK 546 (733)
T ss_pred EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcc
Confidence 555432110 00 00000 0000 00124778899999999999999987654
Q ss_pred cEEEEeCCccccccCCCCcccceeEEeeccc-------------------------------CcceEEEEeCCCc-eeee
Q 023500 166 TIKIWGADITRMQSGDGYASWRHLCTISGYH-------------------------------DRTIFSVHWSREG-IIAS 213 (281)
Q Consensus 166 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~v~~~~~~~~~-~~~~ 213 (281)
.|.|.++. +...+..+..-+.......+| ...+.+++.++.| -++.
T Consensus 547 ~VliHQLS--K~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~ 624 (733)
T KOG0650|consen 547 SVLIHQLS--KRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLIL 624 (733)
T ss_pred eEEEEecc--cccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEE
Confidence 45555443 222221111111111111111 2344566777755 4677
Q ss_pred cCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEE
Q 023500 214 GAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIW 275 (281)
Q Consensus 214 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw 275 (281)
++.|+.+..|++.. .+..+ +..+.|...+++++|++. ..||++|++||++.|+
T Consensus 625 gs~d~k~~WfDldl----sskPy----k~lr~H~~avr~Va~H~r-yPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 625 GSYDKKMCWFDLDL----SSKPY----KTLRLHEKAVRSVAFHKR-YPLFASGSDDGTVIVF 677 (733)
T ss_pred ecCCCeeEEEEccc----Ccchh----HHhhhhhhhhhhhhhccc-cceeeeecCCCcEEEE
Confidence 78888888886632 12222 334578899999999985 4689999999998886
No 180
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.74 E-value=2.6e-16 Score=124.12 Aligned_cols=116 Identities=27% Similarity=0.527 Sum_probs=100.0
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecC--------C------CceeeeeeecCCCCCeeEEEEcCCCCEEEEecC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDV--------G------GDYECVATLEGHENEVKSVSWNASGTLLATCGR 67 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~--------~------~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~ 67 (281)
|++.|+++.|+|+|++||+|+.+|.+.||... + ..+...+.+.+|.+.|..++|+|++.++++++.
T Consensus 64 H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~ 143 (434)
T KOG1009|consen 64 HTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSV 143 (434)
T ss_pred CcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeec
Confidence 88999999999999999999999999999765 1 224445677899999999999999999999999
Q ss_pred CCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEe
Q 023500 68 DKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWW 120 (281)
Q Consensus 68 d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~ 120 (281)
|+++++||+..+. ....+.+|...+..++|.|..+++++-|.|...+...
T Consensus 144 dns~~l~Dv~~G~---l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~ 193 (434)
T KOG1009|consen 144 DNSVRLWDVHAGQ---LLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFS 193 (434)
T ss_pred cceEEEEEeccce---eEeeccccccccceeecchhhhhhhhhccCcccceee
Confidence 9999999997664 4567788999999999999999998888887555443
No 181
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.74 E-value=2.6e-14 Score=117.71 Aligned_cols=257 Identities=11% Similarity=0.157 Sum_probs=154.1
Q ss_pred cceeEEEEcCCCCEEEEee-CCCcEEEEecC-CCceeeeeeecCCCCCeeEEEEcCCCCEEEEec-CCCcEEEEEecCCC
Q 023500 4 RTVRSCAWSPSGKLLATAS-FDATTCIWEDV-GGDYECVATLEGHENEVKSVSWNASGTLLATCG-RDKSVWIWEVMPGN 80 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~-~d~~i~lw~~~-~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~d~~v~~w~~~~~~ 80 (281)
.....++++|++++|+.++ .++.|.+|+.. ++....+.... ..+....++|+|++++|++++ .++.|.+|++....
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g 113 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDG 113 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence 3456789999999876654 57889999875 33333333322 334556899999999888776 48899999986322
Q ss_pred -eeEEeEeecCCccceeEEEecCCCCeEEE-EecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEE
Q 023500 81 -EFECVSVLQGHAQDVKMVQWHPTMDVLFS-CSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158 (281)
Q Consensus 81 -~~~~~~~~~~~~~~v~~v~~~p~~~~l~s-~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 158 (281)
.......+. +.....++.++|+++++++ ...++.|.+|+++....-.......... .. ...+..+.|+|+++++
T Consensus 114 ~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~-~~--g~~p~~~~~~pdg~~l 189 (330)
T PRK11028 114 IPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTT-VE--GAGPRHMVFHPNQQYA 189 (330)
T ss_pred CCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceec-CC--CCCCceEEECCCCCEE
Confidence 111222222 2234677889999988754 4456999999986521100000000010 01 1235678999999998
Q ss_pred EEeeC-CCcEEEEeCCccccccCCCCcccceeEEeec-----ccCcceEEEEeCCCce-eeec-CCCCcEEEEecccCCC
Q 023500 159 VSCSD-DLTIKIWGADITRMQSGDGYASWRHLCTISG-----YHDRTIFSVHWSREGI-IASG-AADDSVQFFVESKDDL 230 (281)
Q Consensus 159 ~s~~~-d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~-~~~~-~~d~~~~~~~~~~~~~ 230 (281)
++... ++.|.+|+++...- .++....+.. ........+.++|++. ++++ ..++.+.+|+......
T Consensus 190 yv~~~~~~~v~v~~~~~~~~-------~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~ 262 (330)
T PRK11028 190 YCVNELNSSVDVWQLKDPHG-------EIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGS 262 (330)
T ss_pred EEEecCCCEEEEEEEeCCCC-------CEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCC
Confidence 77765 89999998752100 0011111110 0111223577788763 3333 3567899997743211
Q ss_pred cCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 231 IDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 231 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
.. ......... ...+.+.++|++++++++...++.|.+|++.
T Consensus 263 ----~~-~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 263 ----VL-SFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred ----eE-EEeEEEecc-ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 01 111111111 2456789999999888777779999999874
No 182
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.74 E-value=1.5e-15 Score=129.33 Aligned_cols=255 Identities=20% Similarity=0.290 Sum_probs=167.4
Q ss_pred ccceeEEEEcC-CCCEEEEeeCCCcEEEEecCCCceeee----eeecCCCCCeeEEEEcCCC--CEEEEecCCCcEEEEE
Q 023500 3 TRTVRSCAWSP-SGKLLATASFDATTCIWEDVGGDYECV----ATLEGHENEVKSVSWNASG--TLLATCGRDKSVWIWE 75 (281)
Q Consensus 3 ~~~i~~~~~~~-~~~~l~tg~~d~~i~lw~~~~~~~~~~----~~~~~h~~~v~~v~~~~~~--~~l~s~~~d~~v~~w~ 75 (281)
...|++++|+| +..++|.|..+|+|.+||...+...+. .....|.+++..+.|..+. .-++++|.||.|..|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 35799999999 567899999999999999765443211 2224588999999996643 4599999999999998
Q ss_pred ecCCCeeE---EeEeec------CCccceeEEEecCCCC-eEEEEecCCeEEE-EeCCCCCCCCceeeeeeeeccCCccc
Q 023500 76 VMPGNEFE---CVSVLQ------GHAQDVKMVQWHPTMD-VLFSCSYDNTIKV-WWAEDTDSDNWHCVQTISESNNGHSS 144 (281)
Q Consensus 76 ~~~~~~~~---~~~~~~------~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~-w~~~~~~~~~~~~~~~~~~~~~~h~~ 144 (281)
+..-.... ...... .....+++++|.|... .++.|+++|.|.- .+-.... ... ...+.......|.+
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~-~~~-~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTP-APE-VSYKGHSTFITHIG 399 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcc-ccc-ccccccccccccCc
Confidence 75322110 001111 2234678999998654 6889999998865 2111110 000 11111222235789
Q ss_pred cEEEEEEccCCC-EEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC--ceeeecCCCCcEE
Q 023500 145 TIWALSFNAKGD-KLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE--GIIASGAADDSVQ 221 (281)
Q Consensus 145 ~v~~~~~~~~~~-~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~d~~~~ 221 (281)
.|.++.++|-.. .+++++ |-++++|..+... .++..+. .+...+++++|+|- ..++++..+|.+.
T Consensus 400 ~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~----------~Pl~~~~-~~~~~v~~vaWSptrpavF~~~d~~G~l~ 467 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIA----------SPLLSLD-SSPDYVTDVAWSPTRPAVFATVDGDGNLD 467 (555)
T ss_pred ceEeeecCCCccceeeeec-cceeEeccccCCC----------Ccchhhh-hccceeeeeEEcCcCceEEEEEcCCCcee
Confidence 999999999664 555555 8899999765221 1111111 13344889999985 5788888999999
Q ss_pred EEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 222 FFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
+|++...... +... ...+....+.+.|++.++ ++++|...|.+.+|++..
T Consensus 468 iWDLl~~~~~--Pv~s-----~~~~~~~l~~~~~s~~g~-~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 468 IWDLLQDDEE--PVLS-----QKVCSPALTRVRWSPNGK-LLAVGDANGTTHILKLSE 517 (555)
T ss_pred hhhhhccccC--Cccc-----ccccccccceeecCCCCc-EEEEecCCCcEEEEEcCc
Confidence 9987653221 1111 112345567788888664 788999999999999853
No 183
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.74 E-value=2.3e-15 Score=115.78 Aligned_cols=249 Identities=22% Similarity=0.411 Sum_probs=161.1
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEecCCCc----------eeeeeeec-CCCCCeeEEEEc-------CCCCEEEEecCC
Q 023500 7 RSCAWSPSGKLLATASFDATTCIWEDVGGD----------YECVATLE-GHENEVKSVSWN-------ASGTLLATCGRD 68 (281)
Q Consensus 7 ~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~----------~~~~~~~~-~h~~~v~~v~~~-------~~~~~l~s~~~d 68 (281)
..+.|+|||.-|++-+.|+.+.+|+.-... ++...++. ...+.|....|- |+..++++.+.|
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 357899999999999999999999842110 00000111 123567777774 667789999999
Q ss_pred CcEEEEEecCCCeeEEeEeecCCccc---eeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCcccc
Q 023500 69 KSVWIWEVMPGNEFECVSVLQGHAQD---VKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSST 145 (281)
Q Consensus 69 ~~v~~w~~~~~~~~~~~~~~~~~~~~---v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~ 145 (281)
.-|.+||...+... +...--.|.++ ..+++|+|++..|++| ....|+++++.+.... .....++.....+..+-
T Consensus 133 ~PIh~wdaftG~lr-aSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~-c~vy~t~~~~k~gq~gi 209 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLR-ASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRD-CPVYTTVTKGKFGQKGI 209 (406)
T ss_pred Cceeeeeccccccc-cchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCC-Ccchhhhhcccccccce
Confidence 99999998776532 21111224333 4589999999998874 5789999988654311 11112222223355677
Q ss_pred EEEEEEccCC-CEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCC-CCcEEE
Q 023500 146 IWALSFNAKG-DKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAA-DDSVQF 222 (281)
Q Consensus 146 v~~~~~~~~~-~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~-d~~~~~ 222 (281)
+.+++|+|.. +.++.|+-...+-||.-... +++ ...+.|...|+.++|.++| .+.+|+. +..+..
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~-----------~pl-~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~ 277 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-----------RPL-QLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILC 277 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCC-----------Cce-eeecccCCCeeeEEeccCcCeecccccCCCeEEE
Confidence 8899999965 48888888888888754422 222 2234688899999999876 5777775 668889
Q ss_pred EecccCCCcCCccceeeeeeccCCCCC-eeEE--EEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 223 FVESKDDLIDGPSYKMLLKKEKAHDMD-VNSV--QWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~--~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
|+++.... +. .....|... =..| ...|++. +|++|+.||.|++||+..
T Consensus 278 WDiR~~~~---pv-----~~L~rhv~~TNQRI~FDld~~~~-~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 278 WDIRYSRD---PV-----YALERHVGDTNQRILFDLDPKGE-ILASGDTDGSVRVWDLKD 328 (406)
T ss_pred Eeehhccc---hh-----hhhhhhccCccceEEEecCCCCc-eeeccCCCccEEEEecCC
Confidence 97754211 11 111122221 1123 3446664 789999999999999764
No 184
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.73 E-value=5.1e-16 Score=117.69 Aligned_cols=204 Identities=15% Similarity=0.293 Sum_probs=138.4
Q ss_pred ccceeEEEEcC-CCCEEEEeeCCCcEEEEecCCCce-eeeeeecCCCCCeeEEEEcCCCC-EEEEecCCCcEEEEEecCC
Q 023500 3 TRTVRSCAWSP-SGKLLATASFDATTCIWEDVGGDY-ECVATLEGHENEVKSVSWNASGT-LLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 3 ~~~i~~~~~~~-~~~~l~tg~~d~~i~lw~~~~~~~-~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~v~~w~~~~~ 79 (281)
..++++..|+. +-+++.+.|-|.++.|||..++.. -....+-+|+++|+.|+|...+. .+++.|+||+||+||++.-
T Consensus 150 ~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~l 229 (364)
T KOG0290|consen 150 CAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSL 229 (364)
T ss_pred CCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccc
Confidence 35788889998 667899999999999999877622 22345678999999999998664 6899999999999999754
Q ss_pred CeeEEeEeecCCccceeEEEecCCC-CeEEEEecC-CeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCC-C
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPTM-DVLFSCSYD-NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG-D 156 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~~-~~l~s~s~d-~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~ 156 (281)
+-...+..-.........++|+++. +++++-..| ..|.+.|+....+ .+.++ .+|++.|+.++|.|.. .
T Consensus 230 eHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t----pva~L----~~H~a~VNgIaWaPhS~~ 301 (364)
T KOG0290|consen 230 EHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT----PVARL----RNHQASVNGIAWAPHSSS 301 (364)
T ss_pred ccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc----ceehh----hcCcccccceEecCCCCc
Confidence 3211222112224556778888765 466665555 4788888765532 22233 4799999999999964 5
Q ss_pred EEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC-CceeeecCCCCcEE
Q 023500 157 KLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQ 221 (281)
Q Consensus 157 ~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~d~~~~ 221 (281)
.+.+|+.|....+||+..-.....+ .++..+. ....|..+.|++ ..-.++.+.++.++
T Consensus 302 hictaGDD~qaliWDl~q~~~~~~~-----dPilay~--a~~EVNqi~Ws~~~~Dwiai~~~kkle 360 (364)
T KOG0290|consen 302 HICTAGDDCQALIWDLQQMPRENGE-----DPILAYT--AGGEVNQIQWSSSQPDWIAICFGKKLE 360 (364)
T ss_pred eeeecCCcceEEEEecccccccCCC-----Cchhhhh--ccceeeeeeecccCCCEEEEEecCeee
Confidence 8999999999999998632221000 1111111 356788888885 33344444444443
No 185
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=2.7e-15 Score=111.20 Aligned_cols=245 Identities=13% Similarity=0.143 Sum_probs=155.1
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecCCC--------ceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEe
Q 023500 5 TVRSCAWSPSGKLLATASFDATTCIWEDVGG--------DYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEV 76 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~--------~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~ 76 (281)
.|..-+++|.+++|+.|+.+|.|.+...+.- ....+....+|+++|+.++|. ..+|++|++ |.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeee
Confidence 4566689999999999999999999874321 112344558999999999997 456777765 99999976
Q ss_pred cCCCe-eEE---------eEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccE
Q 023500 77 MPGNE-FEC---------VSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTI 146 (281)
Q Consensus 77 ~~~~~-~~~---------~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v 146 (281)
....+ ..+ ..+-.-.-+.|++.-..|..+-++.++.|+.++.||+++.. +....+||+..+
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~---------i~r~~rGHtDYv 159 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGR---------IQREYRGHTDYV 159 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCE---------EEEEEcCCccee
Confidence 53322 101 11111124678899999999988888899999999998763 333346999999
Q ss_pred EEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecc
Q 023500 147 WALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVES 226 (281)
Q Consensus 147 ~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~ 226 (281)
.++.-......+++|+.||++|+||.+..+....-+.-. .+.+.-+ .-...|-+++- +.-.+.++....+.+|..+
T Consensus 160 H~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk-~~~~lRp-~~g~wigala~--~edWlvCGgGp~lslwhLr 235 (325)
T KOG0649|consen 160 HSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYK-NPNLLRP-DWGKWIGALAV--NEDWLVCGGGPKLSLWHLR 235 (325)
T ss_pred eeeeecccCcceeecCCCccEEEEeccccceeEEecccc-ChhhcCc-ccCceeEEEec--cCceEEecCCCceeEEecc
Confidence 999985555678899999999999998655322111000 0000000 01223333332 3334555666678889664
Q ss_pred cCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 227 KDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
... . ...+. -..++..+.|--+ .+++++..+.|.-|.+.
T Consensus 236 sse-----~-t~vfp----ipa~v~~v~F~~d---~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 236 SSE-----S-TCVFP----IPARVHLVDFVDD---CVLIGGEGNHVQSYTLN 274 (325)
T ss_pred CCC-----c-eEEEe----cccceeEeeeecc---eEEEeccccceeeeeec
Confidence 321 1 11111 1234666777632 35567766667666543
No 186
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.73 E-value=2.2e-16 Score=131.33 Aligned_cols=205 Identities=17% Similarity=0.280 Sum_probs=138.5
Q ss_pred cceeEEEEcC-CCCEEEEeeCCCcEEEEecCCCc-----eeeeeeecCCCCCeeEEEEcC-CCCEEEEecCCCcEEEEEe
Q 023500 4 RTVRSCAWSP-SGKLLATASFDATTCIWEDVGGD-----YECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEV 76 (281)
Q Consensus 4 ~~i~~~~~~~-~~~~l~tg~~d~~i~lw~~~~~~-----~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~~w~~ 76 (281)
..|+.+.|+| |.+.||.++.||.|+||....+. ..+-+.+.+|.+.|+++.|+| ..+.|++++.|-+|++||+
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL 707 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence 4588999999 88899999999999999864332 234567789999999999999 6788999999999999999
Q ss_pred cCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCC
Q 023500 77 MPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD 156 (281)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 156 (281)
.+... ...+.+|.+.|..++|+|+++.+++.+.||++++|...+.+.. ++.- ....+.+ ---+.|-.++.
T Consensus 708 ~~~~~---~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~p----v~Eg-~gpvgtR--gARi~wacdgr 777 (1012)
T KOG1445|consen 708 ANAKL---YSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQP----VYEG-KGPVGTR--GARILWACDGR 777 (1012)
T ss_pred hhhhh---hheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCc----cccC-CCCccCc--ceeEEEEecCc
Confidence 87654 3457899999999999999999999999999999976554311 1111 0111111 13467777888
Q ss_pred EEEEeeCC----CcEEEEeCCccccccCCCCcccceeEEeec-c-cCcceEEEEeCCCceeeecCCCCcEEEEeccc
Q 023500 157 KLVSCSDD----LTIKIWGADITRMQSGDGYASWRHLCTISG-Y-HDRTIFSVHWSREGIIASGAADDSVQFFVESK 227 (281)
Q Consensus 157 ~l~s~~~d----~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~ 227 (281)
+++..+-| ..|.+|+..... .+++....- . ....+-....+.+-++++|-.|..+.+|.+-.
T Consensus 778 ~viv~Gfdk~SeRQv~~Y~Aq~l~---------~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 778 IVIVVGFDKSSERQVQMYDAQTLD---------LRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred EEEEecccccchhhhhhhhhhhcc---------CCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecC
Confidence 77766544 356666543211 111111100 0 00001111112233678888899998885543
No 187
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.70 E-value=1.1e-14 Score=124.12 Aligned_cols=239 Identities=19% Similarity=0.247 Sum_probs=154.7
Q ss_pred CcEEEEecCCCceeeeeeecCCCCCeeEEEEcC-CCCEEEEecCCCcEEEEEecCCCe--eEE-eEeecCCccceeEEEe
Q 023500 25 ATTCIWEDVGGDYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNE--FEC-VSVLQGHAQDVKMVQW 100 (281)
Q Consensus 25 ~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~~~--~~~-~~~~~~~~~~v~~v~~ 100 (281)
+.+.||+..... .+-..+. -...|.|+.|+| ++.+++.|..+|+|.+||++.... ... -.....|...+..+.|
T Consensus 222 ~~~~vW~~~~p~-~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 222 GVLLVWSLKNPN-TPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred ceEEEEecCCCC-CceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 368899876542 2233333 568899999999 678899999999999999986543 111 1223468889999999
Q ss_pred cCCCCe--EEEEecCCeEEEEeCCCCCCCCceeeeeeeec----cCCccccEEEEEEccC-CCEEEEeeCCCcEEEEeCC
Q 023500 101 HPTMDV--LFSCSYDNTIKVWWAEDTDSDNWHCVQTISES----NNGHSSTIWALSFNAK-GDKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 101 ~p~~~~--l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~----~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~~w~~~ 173 (281)
-.+..- ++++|.||.|..|+++...... .....-... .......++++.|.+. ...++.|+.+|.|.--...
T Consensus 300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~-e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~ 378 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPV-EGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK 378 (555)
T ss_pred eccCCCCceEEEecCCcEeeeeccccccch-hhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence 765444 9999999999999765432100 000000000 0012345788999874 4579999999988663222
Q ss_pred ccccccCCCCcccceeEEeecccCcceEEEEeCCCc--eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCee
Q 023500 174 ITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVN 251 (281)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 251 (281)
....... ...+.+.. ...|..++.++.++|-+ .+++++ |-.+++|.... ...+. .....+...|+
T Consensus 379 g~~~~~~---~~~~~~~~-~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~---~~~Pl-----~~~~~~~~~v~ 445 (555)
T KOG1587|consen 379 GYTPAPE---VSYKGHST-FITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDV---IASPL-----LSLDSSPDYVT 445 (555)
T ss_pred CCccccc---cccccccc-ccccCcceEeeecCCCccceeeeec-cceeEeccccC---CCCcc-----hhhhhccceee
Confidence 1111110 01111211 23478899999999854 455555 88999996642 11111 12233555699
Q ss_pred EEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 252 SVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 252 ~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
+++|||.-+.+|+++..||.|.|||+..
T Consensus 446 ~vaWSptrpavF~~~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 446 DVAWSPTRPAVFATVDGDGNLDIWDLLQ 473 (555)
T ss_pred eeEEcCcCceEEEEEcCCCceehhhhhc
Confidence 9999998888999999999999999864
No 188
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1.3e-15 Score=122.82 Aligned_cols=268 Identities=18% Similarity=0.276 Sum_probs=178.7
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCC--CCEEEEecCCCcEEEEEecCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS--GTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~d~~v~~w~~~~~ 79 (281)
|.+.|+.+.|+..|..|++|+.|..+.+||....... +.-..||...|....|-|. .+-|++++.||.+++=.+...
T Consensus 141 H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~-l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t 219 (559)
T KOG1334|consen 141 HKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK-LSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILET 219 (559)
T ss_pred CCCccceeeecccCceeeccCccceEEeehhhccCcc-cccccccccchhhhhccCCCCCcCceeccccCceeeeeeccc
Confidence 7789999999999999999999999999998766533 3334689999999999883 345999999999999887655
Q ss_pred CeeEEeEeecCCccceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccc---cEEEEEEccCC
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSS---TIWALSFNAKG 155 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~ 155 (281)
...+....+..|...|..++.-|+.. .+.+++.|+.++-.|+....... ... ....+.. ...+++.+|..
T Consensus 220 ~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~--~~~----cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 220 GYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAE--KFV----CREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred cceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccc--eee----eeccCCccceeeeeEecCCCC
Confidence 54443455677889999999988765 58999999999877765432111 011 1112222 45788888876
Q ss_pred C-EEEEeeCCCcEEEEeCCccccccCCC-CcccceeEEeecccCcceEEEEeC-CCceeeecCCCCcEEEEecccCCCcC
Q 023500 156 D-KLVSCSDDLTIKIWGADITRMQSGDG-YASWRHLCTISGYHDRTIFSVHWS-REGIIASGAADDSVQFFVESKDDLID 232 (281)
Q Consensus 156 ~-~l~s~~~d~~i~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~ 232 (281)
. .+++++.|...++||.....-....+ +...-+-.... -....|+++.++ ..+.+++.-.|-.++++.........
T Consensus 294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~-d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~ 372 (559)
T KOG1334|consen 294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVE-DDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE 372 (559)
T ss_pred ccccccCChhhhhhhhcccchhhccccchhhhcCCccccc-cCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence 5 89999999999999865322111111 00000111111 123457788888 45567777778788888443322211
Q ss_pred ---Cccceeeeee-ccCCC--CCeeEEEEc-CCCCeeEEEeCCCCeEEEEEcc
Q 023500 233 ---GPSYKMLLKK-EKAHD--MDVNSVQWS-PGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 233 ---~~~~~~~~~~-~~~h~--~~v~~~~~~-~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
......+.+. .++|. ..|..+-|- |.. .++++|++-|.|.||+-.
T Consensus 373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs-EyVvSGSDCGhIFiW~K~ 424 (559)
T KOG1334|consen 373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS-EYVVSGSDCGHIFIWDKK 424 (559)
T ss_pred CCCCcchhhccchhhcccccccccceeeeccCcc-ceEEecCccceEEEEecc
Confidence 0111122222 45663 347777654 443 578899999999999854
No 189
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=7.4e-15 Score=128.55 Aligned_cols=255 Identities=22% Similarity=0.298 Sum_probs=160.2
Q ss_pred ceeEEEEcC--CCCEEEEeeCCCcEEEEecCC---CceeeeeeecC-------CCCCeeEEEEcCCCCEEEEecCCCcEE
Q 023500 5 TVRSCAWSP--SGKLLATASFDATTCIWEDVG---GDYECVATLEG-------HENEVKSVSWNASGTLLATCGRDKSVW 72 (281)
Q Consensus 5 ~i~~~~~~~--~~~~l~tg~~d~~i~lw~~~~---~~~~~~~~~~~-------h~~~v~~v~~~~~~~~l~s~~~d~~v~ 72 (281)
.|+.+.+-. |..++++|+.||.|+||+... ++.+.+..+.+ -.+.-.-++|.....+|+++|+-+.|+
T Consensus 1111 ~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IR 1190 (1387)
T KOG1517|consen 1111 RVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIR 1190 (1387)
T ss_pred ccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEE
Confidence 456666444 345889999999999998643 23344443322 112223467887666677777789999
Q ss_pred EEEecCCCeeEEeEeecCCccceeEEEec-CCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCcccc--EEEE
Q 023500 73 IWEVMPGNEFECVSVLQGHAQDVKMVQWH-PTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSST--IWAL 149 (281)
Q Consensus 73 ~w~~~~~~~~~~~~~~~~~~~~v~~v~~~-p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~~ 149 (281)
+||..... .+.....+-...++++.-. +.++.+++|-.||.|++||......+...+. -+.|.+. |..+
T Consensus 1191 IWDa~~E~--~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~------~R~h~~~~~Iv~~ 1262 (1387)
T KOG1517|consen 1191 IWDAHKEQ--VVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCV------YREHNDVEPIVHL 1262 (1387)
T ss_pred EEecccce--eEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcccccee------ecccCCcccceeE
Confidence 99985432 2333333444456665433 3468999999999999998866543321111 1245555 8888
Q ss_pred EEccCCC-EEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeeccc-CcceEEEEeCCCc-eeeecCCCCcEEEEecc
Q 023500 150 SFNAKGD-KLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYH-DRTIFSVHWSREG-IIASGAADDSVQFFVES 226 (281)
Q Consensus 150 ~~~~~~~-~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~ 226 (281)
.+.+.|. .|++|+.||.|++||+++. ..+.+. ....... ....+++..++.. .+++|+. +.+.+|+..
T Consensus 1263 slq~~G~~elvSgs~~G~I~~~DlR~~---~~e~~~-----~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1263 SLQRQGLGELVSGSQDGDIQLLDLRMS---SKETFL-----TIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS 1333 (1387)
T ss_pred EeecCCCcceeeeccCCeEEEEecccC---cccccc-----eeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC
Confidence 9988664 5999999999999998753 111111 1111111 1236677667654 5555555 999999887
Q ss_pred cCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 227 KDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
.+.+..-+.....+.. ....+.+++|||- +-++|.|+.|..|.||...++
T Consensus 1334 G~~l~~~k~n~~F~~q---~~gs~scL~FHP~-~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1334 GEQLNIIKYNPGFMGQ---RIGSVSCLAFHPH-RLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred hhhhcccccCcccccC---cCCCcceeeecch-hHhhhhccCCceEEEeecCCc
Confidence 6544322221222222 2344689999996 457888999999999987664
No 190
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=1.9e-15 Score=123.89 Aligned_cols=134 Identities=23% Similarity=0.455 Sum_probs=109.8
Q ss_pred eeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecC-----CCeeEEeEeecCCccceeEEEecCCCCeEEEEecC
Q 023500 39 CVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP-----GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD 113 (281)
Q Consensus 39 ~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~-----~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d 113 (281)
...++..|...|..++|.|....|++++.|+.+++|+++. ....+++.++.+|..+|-|+...+.+.++++|+.|
T Consensus 286 ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~D 365 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGID 365 (577)
T ss_pred eeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccC
Confidence 3446778999999999999999999999999999999942 22346788999999999999999999999999999
Q ss_pred CeEEEEeCCCCCCCC--ceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 023500 114 NTIKVWWAEDTDSDN--WHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 114 ~~v~~w~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~ 173 (281)
|+|+.|.+. ....+ ......+.....||...|+.+++|+..+.|++|+.||+++.|+..
T Consensus 366 g~I~~w~~p-~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~ 426 (577)
T KOG0642|consen 366 GTIRCWNLP-PNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPT 426 (577)
T ss_pred ceeeeeccC-CCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccC
Confidence 999999765 21111 111222333345899999999999999999999999999999764
No 191
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=2.3e-14 Score=115.05 Aligned_cols=203 Identities=13% Similarity=0.229 Sum_probs=141.8
Q ss_pred CCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCC-eEEEEecCCeEEEEeCCCC
Q 023500 46 HENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDT 124 (281)
Q Consensus 46 h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~ 124 (281)
..+.|+++.|+|....++++|.|+++++|-+..... ..+..+.--.-+|.++.|.|++. .+++++.-.-.+.||++..
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N-~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN-PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccC-hhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 347899999999999999999999999999853322 23333333356799999999999 8999999999999999765
Q ss_pred CCCCceeeeeeeeccCCcc-ccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEE
Q 023500 125 DSDNWHCVQTISESNNGHS-STIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSV 203 (281)
Q Consensus 125 ~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 203 (281)
.... +.. ..++. ..+.....+|++.+++..+..|.|.+-..+.+.. +.++. ....+..+
T Consensus 291 k~~k------~~~-~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el-----------i~s~K--ieG~v~~~ 350 (514)
T KOG2055|consen 291 KVTK------LKP-PYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL-----------ITSFK--IEGVVSDF 350 (514)
T ss_pred cccc------ccC-CCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh-----------hheee--eccEEeeE
Confidence 4222 211 12332 2345567789999999999999999986654321 22222 35667788
Q ss_pred EeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 204 HWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 204 ~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
.|+.++ .+++++.+|.+.+|+++.. ......+-....| -++++.++++. +||+|+.-|.|.|||..
T Consensus 351 ~fsSdsk~l~~~~~~GeV~v~nl~~~-----~~~~rf~D~G~v~---gts~~~S~ng~-ylA~GS~~GiVNIYd~~ 417 (514)
T KOG2055|consen 351 TFSSDSKELLASGGTGEVYVWNLRQN-----SCLHRFVDDGSVH---GTSLCISLNGS-YLATGSDSGIVNIYDGN 417 (514)
T ss_pred EEecCCcEEEEEcCCceEEEEecCCc-----ceEEEEeecCccc---eeeeeecCCCc-eEEeccCcceEEEeccc
Confidence 888665 5777788889999977542 2222222222222 35566677665 79999999999999954
No 192
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.66 E-value=5e-13 Score=110.10 Aligned_cols=243 Identities=11% Similarity=0.128 Sum_probs=145.9
Q ss_pred EEEeeCCCcEEEEecCC-CceeeeeeecCCCCCeeEEEEcCCCCEEEEe-cCCCcEEEEEecCCCeeEEeEeecCCccce
Q 023500 18 LATASFDATTCIWEDVG-GDYECVATLEGHENEVKSVSWNASGTLLATC-GRDKSVWIWEVMPGNEFECVSVLQGHAQDV 95 (281)
Q Consensus 18 l~tg~~d~~i~lw~~~~-~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~-~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v 95 (281)
+++...|+.|.+|+..+ ++...+..+. +.+....++++|++++|+.+ ..++.|.+|++........+.... .....
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p 82 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSP 82 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCc
Confidence 45557789999999853 4444555554 34667789999999988665 458899999996332222222222 22345
Q ss_pred eEEEecCCCCeEEEEec-CCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEE-EeeCCCcEEEEeCC
Q 023500 96 KMVQWHPTMDVLFSCSY-DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV-SCSDDLTIKIWGAD 173 (281)
Q Consensus 96 ~~v~~~p~~~~l~s~s~-d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~d~~i~~w~~~ 173 (281)
..+.++|+++.+++++. ++.|.+|+++..... ...+..+ .+...+..++++|++++++ +...++.|.+||++
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~-~~~~~~~-----~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~ 156 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIP-VAPIQII-----EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLS 156 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCC-CCceeec-----cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEEC
Confidence 78999999998887765 789999988632110 0111111 1123356788999998775 55567899999986
Q ss_pred ccccccCCCCcccceeEEeecccCcceEEEEeCCCce-e-eecCCCCcEEEEecccCCCcCCccceee--eee---ccCC
Q 023500 174 ITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-I-ASGAADDSVQFFVESKDDLIDGPSYKML--LKK---EKAH 246 (281)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~h 246 (281)
......... ....... .......+.++|++. + ++...++.+.+|+..... + ..... ... ...+
T Consensus 157 ~~g~l~~~~----~~~~~~~--~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~---~-~~~~~~~~~~~p~~~~~ 226 (330)
T PRK11028 157 DDGHLVAQE----PAEVTTV--EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPH---G-EIECVQTLDMMPADFSD 226 (330)
T ss_pred CCCcccccC----CCceecC--CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCC---C-CEEEEEEEecCCCcCCC
Confidence 321110000 0000000 122345678888764 3 333347899999875310 0 00111 100 0112
Q ss_pred CCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 247 DMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 247 ~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
......+.++|++++++++...++.|.+|++.
T Consensus 227 ~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~ 258 (330)
T PRK11028 227 TRWAADIHITPDGRHLYACDRTASLISVFSVS 258 (330)
T ss_pred CccceeEEECCCCCEEEEecCCCCeEEEEEEe
Confidence 22344688999998877766678999999984
No 193
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.66 E-value=3.4e-15 Score=121.98 Aligned_cols=179 Identities=21% Similarity=0.372 Sum_probs=128.0
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|.+-.|+|||.-|+|.++||.|++|...+-- -.++-....+|+|++|.|++..++-+.. +++.+=.+...
T Consensus 103 H~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGML---RStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~n-- 176 (737)
T KOG1524|consen 103 HAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGML---RSTVVQNEESIRCARWAPNSNSIVFCQG-GHISIKPLAAN-- 176 (737)
T ss_pred hhhhhhhcccCCCCceeeeecCCceEEEEeccchH---HHHHhhcCceeEEEEECCCCCceEEecC-CeEEEeecccc--
Confidence 67788899999999999999999999999754421 1233446789999999998766554433 34444344322
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
..+-.+++|.+-|-++.|+|..+++++|++|...++||..... +. ....|..++++++|+|+ +.++.+
T Consensus 177 -~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~---------Lf-~S~~~ey~ITSva~npd-~~~~v~ 244 (737)
T KOG1524|consen 177 -SKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGAN---------LF-TSAAEEYAITSVAFNPE-KDYLLW 244 (737)
T ss_pred -cceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcc---------cc-cCChhccceeeeeeccc-cceeee
Confidence 2345688999999999999999999999999999999754321 11 12368889999999999 556655
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeec-CCCCcEEE
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASG-AADDSVQF 222 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~~~~ 222 (281)
+.. ++|+ .......|+.++|+++|.-+++ ...|.+.+
T Consensus 245 S~n-t~R~-----------------------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 245 SYN-TARF-----------------------SSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eee-eeee-----------------------cCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 532 3331 1123567899999999865544 45665544
No 194
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=1.9e-14 Score=122.28 Aligned_cols=218 Identities=22% Similarity=0.305 Sum_probs=136.5
Q ss_pred CccceeEEEEcCCCCEEEEeeCC---CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEec-CCCcEEEEEec
Q 023500 2 HTRTVRSCAWSPSGKLLATASFD---ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCG-RDKSVWIWEVM 77 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d---~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~d~~v~~w~~~ 77 (281)
|...+...+|+|||+.||.++.+ ..|.+||..+++...+..+.+|. ..++|+|||++|+.++ .++.+.+|.+.
T Consensus 202 ~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~---~~~~wSPDG~~La~~~~~~g~~~Iy~~d 278 (429)
T PRK01742 202 SSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN---GAPAFSPDGSRLAFASSKDGVLNIYVMG 278 (429)
T ss_pred CCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc---CceeECCCCCEEEEEEecCCcEEEEEEE
Confidence 34568899999999999887754 36999998777655555555443 4689999999887764 68877776543
Q ss_pred C-CCeeEEeEeecCCccceeEEEecCCCCeEEEEe-cCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCC
Q 023500 78 P-GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS-YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG 155 (281)
Q Consensus 78 ~-~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s-~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 155 (281)
. +.. ...+..+...+..+.|+|++..++.++ .++...+|.++..... ...+ .+.. ....|+|++
T Consensus 279 ~~~~~---~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~----~~~l-----~~~~--~~~~~SpDG 344 (429)
T PRK01742 279 ANGGT---PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG----ASLV-----GGRG--YSAQISADG 344 (429)
T ss_pred CCCCC---eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----eEEe-----cCCC--CCccCCCCC
Confidence 2 122 233455666688999999999766555 5788888876432211 1111 1222 346899999
Q ss_pred CEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCc
Q 023500 156 DKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGP 234 (281)
Q Consensus 156 ~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~ 234 (281)
+.|+..+.++ +..||...+... .+. ... ......|+|++ +++.++.++...+|.... .++.
T Consensus 345 ~~ia~~~~~~-i~~~Dl~~g~~~---------~lt--~~~---~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~---~~G~ 406 (429)
T PRK01742 345 KTLVMINGDN-VVKQDLTSGSTE---------VLS--STF---LDESPSISPNGIMIIYSSTQGLGKVLQLVS---ADGR 406 (429)
T ss_pred CEEEEEcCCC-EEEEECCCCCeE---------Eec--CCC---CCCCceECCCCCEEEEEEcCCCceEEEEEE---CCCC
Confidence 9998887766 445877543211 000 011 12345688887 455555677666664321 0111
Q ss_pred cceeeeeeccCCCCCeeEEEEcCC
Q 023500 235 SYKMLLKKEKAHDMDVNSVQWSPG 258 (281)
Q Consensus 235 ~~~~~~~~~~~h~~~v~~~~~~~~ 258 (281)
.......|...+...+|+|-
T Consensus 407 ----~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 407 ----FKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred ----ceEEccCCCCCCCCcccCCC
Confidence 12233467778888999984
No 195
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.64 E-value=8.8e-15 Score=109.64 Aligned_cols=255 Identities=18% Similarity=0.234 Sum_probs=161.2
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeec-CCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLE-GHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
|...|+++.|..+++ |.+|..-|.+.+|+..+.... ..+. .|...|+.+..-|+ ..+.+=+.|..+.+|++..+.
T Consensus 13 ~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~--~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~ 88 (323)
T KOG0322|consen 13 HSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDL--PLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSA 88 (323)
T ss_pred ccchheehhhccchh-hhcccccceEEEEEeecCccc--hhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcc
Confidence 566788888887776 668999999999998776533 3445 45678888887776 678899999999999985321
Q ss_pred eeE-----------EeEee---------------------------------------cCCccceeEEEecC-CCC--eE
Q 023500 81 EFE-----------CVSVL---------------------------------------QGHAQDVKMVQWHP-TMD--VL 107 (281)
Q Consensus 81 ~~~-----------~~~~~---------------------------------------~~~~~~v~~v~~~p-~~~--~l 107 (281)
... |...+ .+..+-+.|..|.- .+. ++
T Consensus 89 ~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~ll 168 (323)
T KOG0322|consen 89 FISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLL 168 (323)
T ss_pred eEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEE
Confidence 100 00000 00011122332211 122 46
Q ss_pred EEEecCCeEEEEeCCCCCCC-CceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCccc
Q 023500 108 FSCSYDNTIKVWWAEDTDSD-NWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASW 186 (281)
Q Consensus 108 ~s~s~d~~v~~w~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~ 186 (281)
++|-++|.+-+||+...+-. .....-........|..+|.+++|.+.-..=++|+.+-.+..|+++-...... .
T Consensus 169 laGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq-----~ 243 (323)
T KOG0322|consen 169 LAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQ-----I 243 (323)
T ss_pred EEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccc-----c
Confidence 78889999999999765210 00000011112235889999999987666667788888888887642111000 0
Q ss_pred ceeEEeecccCcceEEEEeCCC-ceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEE
Q 023500 187 RHLCTISGYHDRTIFSVHWSRE-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLAS 265 (281)
Q Consensus 187 ~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s 265 (281)
+...... ...+..+..-++ .++++++.|+++|+|..+.... +...+.|...|++++|+|+. .++|.
T Consensus 244 ~~e~~lk---npGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~p---------LAVLkyHsagvn~vAfspd~-~lmAa 310 (323)
T KOG0322|consen 244 RKEITLK---NPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNP---------LAVLKYHSAGVNAVAFSPDC-ELMAA 310 (323)
T ss_pred cceEEec---CCCccceEEccCCcEEeecccCCcEEEEEeccCCc---------hhhhhhhhcceeEEEeCCCC-chhhh
Confidence 1111111 112223333444 4788999999999998765321 23456799999999999974 58999
Q ss_pred eCCCCeEEEEEcc
Q 023500 266 ASDDGMIKIWELA 278 (281)
Q Consensus 266 ~~~Dg~v~iw~~~ 278 (281)
+|.|+.|-+|++.
T Consensus 311 askD~rISLWkLY 323 (323)
T KOG0322|consen 311 ASKDARISLWKLY 323 (323)
T ss_pred ccCCceEEeeecC
Confidence 9999999999974
No 196
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.62 E-value=3.8e-13 Score=119.61 Aligned_cols=267 Identities=19% Similarity=0.207 Sum_probs=164.7
Q ss_pred CccceeEEEEcC-CCCEEEEeeCCCcEEEEecCC-----CceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEE
Q 023500 2 HTRTVRSCAWSP-SGKLLATASFDATTCIWEDVG-----GDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWE 75 (281)
Q Consensus 2 h~~~i~~~~~~~-~~~~l~tg~~d~~i~lw~~~~-----~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~ 75 (281)
|...|..++.++ .+.+|+|||.||+|++|+... +...+..++..-...+.++..-+.++.+|.++.||.|.+.+
T Consensus 1047 hs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~ 1126 (1431)
T KOG1240|consen 1047 HSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLR 1126 (1431)
T ss_pred ccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEE
Confidence 556677777766 459999999999999998532 22222334443457888999999999999999999999998
Q ss_pred ecCCCe--eE--EeE---------------------------e---------------------ecCCccceeEEEecCC
Q 023500 76 VMPGNE--FE--CVS---------------------------V---------------------LQGHAQDVKMVQWHPT 103 (281)
Q Consensus 76 ~~~~~~--~~--~~~---------------------------~---------------------~~~~~~~v~~v~~~p~ 103 (281)
+...+. .. +.+ . .....+.|++++.+|.
T Consensus 1127 id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~ 1206 (1431)
T KOG1240|consen 1127 IDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPW 1206 (1431)
T ss_pred ccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCC
Confidence 864110 00 000 0 0112356889999999
Q ss_pred CCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEcc---CCCEEEEee--CCCcEEEEeCCccccc
Q 023500 104 MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA---KGDKLVSCS--DDLTIKIWGADITRMQ 178 (281)
Q Consensus 104 ~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~~--~d~~i~~w~~~~~~~~ 178 (281)
++.+++|+..|.+-+||+.-... +.... -++..++..+..+| .....++++ ..+.+.+|++..+.++
T Consensus 1207 ~~WlviGts~G~l~lWDLRF~~~-----i~sw~---~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~ 1278 (1431)
T KOG1240|consen 1207 CNWLVIGTSRGQLVLWDLRFRVP-----ILSWE---HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQ 1278 (1431)
T ss_pred ceEEEEecCCceEEEEEeecCce-----eeccc---CcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcce
Confidence 99999999999999998865421 11111 12345555555554 233444443 4678999987654322
Q ss_pred cC----CCCcccceeEEee----cccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCc-------------------
Q 023500 179 SG----DGYASWRHLCTIS----GYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLI------------------- 231 (281)
Q Consensus 179 ~~----~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~------------------- 231 (281)
.. ++...+....... ......+.+.-..+++.+++|++|..+|.|+.......
T Consensus 1279 ~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~ 1358 (1431)
T KOG1240|consen 1279 TVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYD 1358 (1431)
T ss_pred EEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhcc
Confidence 11 0111111000000 00112233444456789999999999999975421110
Q ss_pred ----CCccc-------------e-----ee-e-----eeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 232 ----DGPSY-------------K-----ML-L-----KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 232 ----~~~~~-------------~-----~~-~-----~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
.+... . .. . .....|-.+|+++++....+.++++++.||.|+||+
T Consensus 1359 ~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1359 LSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred ccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 00000 0 00 0 011346778999998887777999999999999995
No 197
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.61 E-value=1.3e-13 Score=103.93 Aligned_cols=148 Identities=20% Similarity=0.397 Sum_probs=100.3
Q ss_pred EEEEcCCCCEEEEeeC---C-------CcEEEEecCCCceeeeeeec-CCCCCeeEEEEcCCCCEEEE--ecCCCcEEEE
Q 023500 8 SCAWSPSGKLLATASF---D-------ATTCIWEDVGGDYECVATLE-GHENEVKSVSWNASGTLLAT--CGRDKSVWIW 74 (281)
Q Consensus 8 ~~~~~~~~~~l~tg~~---d-------~~i~lw~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s--~~~d~~v~~w 74 (281)
.+.|+|+|++|+.-.. | +...||....... .+..+. ...++|.+++|+|+|+.++. |..+..|.+|
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~-~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI-PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC-ccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 4679999997754332 1 2355555432221 122322 23457999999999998644 4567899999
Q ss_pred EecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecC---CeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEE
Q 023500 75 EVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD---NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF 151 (281)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d---~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 151 (281)
|+. . +.+..+. ...++.+.|+|++++++.++.+ |.+.+||++.. +.+.+. .| ..+..++|
T Consensus 89 d~~-~---~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~-----~~i~~~-----~~-~~~t~~~W 151 (194)
T PF08662_consen 89 DVK-G---KKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK-----KKISTF-----EH-SDATDVEW 151 (194)
T ss_pred cCc-c---cEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC-----EEeecc-----cc-CcEEEEEE
Confidence 995 2 2334443 4567899999999999988754 56999988743 223222 23 34789999
Q ss_pred ccCCCEEEEeeC------CCcEEEEeCC
Q 023500 152 NAKGDKLVSCSD------DLTIKIWGAD 173 (281)
Q Consensus 152 ~~~~~~l~s~~~------d~~i~~w~~~ 173 (281)
+|+|++|+++.. |..++||+..
T Consensus 152 sPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 152 SPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred cCCCCEEEEEEeccceeccccEEEEEec
Confidence 999999999874 6778889765
No 198
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=5.5e-15 Score=121.10 Aligned_cols=235 Identities=19% Similarity=0.253 Sum_probs=149.4
Q ss_pred eeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCC--CCeEEEEecCCeEE
Q 023500 40 VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT--MDVLFSCSYDNTIK 117 (281)
Q Consensus 40 ~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~--~~~l~s~s~d~~v~ 117 (281)
-+.+.||.+.|+|+.|+.+|.+|++||+|-.+.|||...-+. ....-.+|...|.+++|-|. ..++++|+.|..|+
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl--lhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL--LHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcce--eeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 457789999999999999999999999999999999763332 22344689999999999995 44799999999999
Q ss_pred EEeCCCCCCCC-ceeeeeeeeccCCccccEEEEEEccCC-CEEEEeeCCCcEEEEeCCcc--ccccCCCCcccceeEEee
Q 023500 118 VWWAEDTDSDN-WHCVQTISESNNGHSSTIWALSFNAKG-DKLVSCSDDLTIKIWGADIT--RMQSGDGYASWRHLCTIS 193 (281)
Q Consensus 118 ~w~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~~w~~~~~--~~~~~~~~~~~~~~~~~~ 193 (281)
++|+.+..... -...........-|...|..++--|.+ ..+-+++.||+++=+|++-. ..+...........+.
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~-- 198 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP-- 198 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhch--
Confidence 99987531110 000111111223588899999998887 68999999999999987531 1110000000000000
Q ss_pred cccCcceEEEEeCCCceeeecCCCCcEEEEecccCC-------CcCCccce---eeeeeccCCC--------CC---eeE
Q 023500 194 GYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDD-------LIDGPSYK---MLLKKEKAHD--------MD---VNS 252 (281)
Q Consensus 194 ~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-------~~~~~~~~---~~~~~~~~h~--------~~---v~~ 252 (281)
..-+.....|+.+...+++.|++|...++|+.+... .......+ .......+|. .. .+-
T Consensus 199 ~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~ 278 (758)
T KOG1310|consen 199 QLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTY 278 (758)
T ss_pred hhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEE
Confidence 001112233444556789999999999999833210 00111000 0011111221 12 456
Q ss_pred EEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 253 VQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 253 ~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
++|+|+|..+|++-+. ..|.++++..
T Consensus 279 vtfnpNGtElLvs~~g-EhVYlfdvn~ 304 (758)
T KOG1310|consen 279 VTFNPNGTELLVSWGG-EHVYLFDVNE 304 (758)
T ss_pred EEECCCCcEEEEeeCC-eEEEEEeecC
Confidence 8899999888877653 4688888764
No 199
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=6.7e-13 Score=116.60 Aligned_cols=249 Identities=18% Similarity=0.314 Sum_probs=158.1
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecC---CCCCeeEEEEcC--CCCEEEEecCCCcEEEEEecCC-
Q 023500 6 VRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEG---HENEVKSVSWNA--SGTLLATCGRDKSVWIWEVMPG- 79 (281)
Q Consensus 6 i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~---h~~~v~~v~~~~--~~~~l~s~~~d~~v~~w~~~~~- 79 (281)
-..+.|+|=...++++..--.|++||...++. +..|.. ....|..+.+-. |..++++|+.||.||+|+--..
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~--l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEKGRL--LNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CceeeecCCCceeEEcCCcceEEEEecccCce--eccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 34567888778888877667899999876642 333332 234677887743 4567999999999999974322
Q ss_pred -CeeEEeEee---cCC----ccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEE
Q 023500 80 -NEFECVSVL---QGH----AQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF 151 (281)
Q Consensus 80 -~~~~~~~~~---~~~----~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 151 (281)
+..+.+..+ .++ .+.-..+.|.....+|++++.-..|+|||..... ++..+. .+....|+++.=
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~-----~~~diP---~~s~t~vTaLS~ 1216 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQ-----VVADIP---YGSSTLVTALSA 1216 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccce-----eEeecc---cCCCccceeecc
Confidence 222222222 111 1112455788877788888888999999887542 222221 223344555543
Q ss_pred c-cCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcc--eEEEEeCCCc--eeeecCCCCcEEEEecc
Q 023500 152 N-AKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRT--IFSVHWSREG--IIASGAADDSVQFFVES 226 (281)
Q Consensus 152 ~-~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~--~~~~~~~d~~~~~~~~~ 226 (281)
+ +.|..++.|..||.+++||.++..+... .+. ..-|... |..+++.++| .+++|+.||.+++|+++
T Consensus 1217 ~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~--------v~~-~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR 1287 (1387)
T KOG1517|consen 1217 DLVHGNIIAAGFADGSVRVYDRRMAPPDSL--------VCV-YREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLR 1287 (1387)
T ss_pred cccCCceEEEeecCCceEEeecccCCcccc--------cee-ecccCCcccceeEEeecCCCcceeeeccCCeEEEEecc
Confidence 3 3468999999999999999876443211 111 1123333 7777776655 58999999999999876
Q ss_pred cCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 227 KDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
..... .+...... ....+.++++..|+..+ ++|||+. +.|+||++.-
T Consensus 1288 ~~~~e---~~~~iv~~-~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1288 MSSKE---TFLTIVAH-WEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSG 1334 (1387)
T ss_pred cCccc---ccceeeec-cccCccceeeeeccCCC-eeeecCc-ceEEEEecCh
Confidence 53111 11111111 11123589999999765 7899988 9999999753
No 200
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=9.1e-14 Score=107.73 Aligned_cols=194 Identities=19% Similarity=0.344 Sum_probs=138.2
Q ss_pred CEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecC--CCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeee
Q 023500 60 TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP--TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISE 137 (281)
Q Consensus 60 ~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p--~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~ 137 (281)
..++++-..++|+++|...++. +..++++.+.++.++|.. ....+.+|+.||+|++||+....... .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~---l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a-----~~~- 111 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQL---LEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA-----RIS- 111 (376)
T ss_pred eeEEEEecCCeEEEEeccchhh---hheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh-----hee-
Confidence 4678888889999999876543 556778888888888876 45679999999999999987653221 111
Q ss_pred ccCCcc-ccEEEEEEccCCCEEEEee----CCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC--ce
Q 023500 138 SNNGHS-STIWALSFNAKGDKLVSCS----DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE--GI 210 (281)
Q Consensus 138 ~~~~h~-~~v~~~~~~~~~~~l~s~~----~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~ 210 (281)
..+++ .+-.+++.+..+..+++|. .+..+.+||.+..+.. +..+...|...|+++.|+|+ .+
T Consensus 112 -~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~----------l~~~~eSH~DDVT~lrFHP~~pnl 180 (376)
T KOG1188|consen 112 -WTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL----------LRQLNESHNDDVTQLRFHPSDPNL 180 (376)
T ss_pred -ccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccch----------hhhhhhhccCcceeEEecCCCCCe
Confidence 12333 4456777666666777765 4668899998754321 22333458889999999985 58
Q ss_pred eeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 211 IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 211 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
+++|+.||.+.+|+.+.++..+ . +...-.|...|..+.|..++..-+.+-+..+...+|++.-
T Consensus 181 LlSGSvDGLvnlfD~~~d~EeD--a----L~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~ 243 (376)
T KOG1188|consen 181 LLSGSVDGLVNLFDTKKDNEED--A----LLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELED 243 (376)
T ss_pred EEeecccceEEeeecCCCcchh--h----HHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccC
Confidence 9999999999999987652211 1 1112246677999999987743477888999999999753
No 201
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.59 E-value=3e-14 Score=106.80 Aligned_cols=160 Identities=18% Similarity=0.276 Sum_probs=117.9
Q ss_pred cceeEEEEcC-CCC--EEEEeeCCCcEEEEecCCCce--------eeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEE
Q 023500 4 RTVRSCAWSP-SGK--LLATASFDATTCIWEDVGGDY--------ECVATLEGHENEVKSVSWNASGTLLATCGRDKSVW 72 (281)
Q Consensus 4 ~~i~~~~~~~-~~~--~l~tg~~d~~i~lw~~~~~~~--------~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~ 72 (281)
+.+.+..+.. .+. +++.|-++|.+.+||..+++. +.......|..+|.++.+.+.-..=++||.+..+.
T Consensus 151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~ 230 (323)
T KOG0322|consen 151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLV 230 (323)
T ss_pred CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccce
Confidence 3456666444 233 567888999999999877521 11223456999999999988766778999999999
Q ss_pred EEEecCC-CeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEE
Q 023500 73 IWEVMPG-NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF 151 (281)
Q Consensus 73 ~w~~~~~-~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 151 (281)
+|++... ...+......-....|..+..-||++.++++++|+.|++|...+.+ .+. -.+-|.+.|++++|
T Consensus 231 ~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~--------pLA-VLkyHsagvn~vAf 301 (323)
T KOG0322|consen 231 MYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN--------PLA-VLKYHSAGVNAVAF 301 (323)
T ss_pred eeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCC--------chh-hhhhhhcceeEEEe
Confidence 9998754 2222112222234568889999999999999999999999554432 221 12358899999999
Q ss_pred ccCCCEEEEeeCCCcEEEEeC
Q 023500 152 NAKGDKLVSCSDDLTIKIWGA 172 (281)
Q Consensus 152 ~~~~~~l~s~~~d~~i~~w~~ 172 (281)
+|+...++.++.|+.|.+|++
T Consensus 302 spd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 302 SPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CCCCchhhhccCCceEEeeec
Confidence 999999999999999999964
No 202
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=2.7e-12 Score=110.62 Aligned_cols=155 Identities=15% Similarity=0.209 Sum_probs=114.0
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEecCCCce-eeee-eecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecC-CCeeE
Q 023500 7 RSCAWSPSGKLLATASFDATTCIWEDVGGDY-ECVA-TLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP-GNEFE 83 (281)
Q Consensus 7 ~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~-~~~~-~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~-~~~~~ 83 (281)
..+.+++.|++....-++ .+.+|....+.. .+.. .-..|...++|.+++|+++++++|..||.|.+|.=.. .....
T Consensus 164 ~~I~~~~~ge~~~i~~~~-~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~ 242 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVHMC-KIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSE 242 (792)
T ss_pred ccEEEcCCceEEEEEEee-eEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccc
Confidence 457788888877665544 466776654321 1111 1124778899999999999999999999999997432 22222
Q ss_pred EeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeC
Q 023500 84 CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD 163 (281)
Q Consensus 84 ~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 163 (281)
....+.=|...|.++.|+++|.+|+||+.++.+-+|..++.. .+.+.++ .+++..+.++||+++.+.+..
T Consensus 243 t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~---kqfLPRL-------gs~I~~i~vS~ds~~~sl~~~ 312 (792)
T KOG1963|consen 243 TCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK---KQFLPRL-------GSPILHIVVSPDSDLYSLVLE 312 (792)
T ss_pred cceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC---ccccccc-------CCeeEEEEEcCCCCeEEEEec
Confidence 234455588899999999999999999999999999877653 2222222 377899999999999999999
Q ss_pred CCcEEEEeC
Q 023500 164 DLTIKIWGA 172 (281)
Q Consensus 164 d~~i~~w~~ 172 (281)
|..|.+...
T Consensus 313 DNqI~li~~ 321 (792)
T KOG1963|consen 313 DNQIHLIKA 321 (792)
T ss_pred CceEEEEec
Confidence 999988754
No 203
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.57 E-value=3.4e-15 Score=127.67 Aligned_cols=160 Identities=25% Similarity=0.428 Sum_probs=117.7
Q ss_pred eeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEE
Q 023500 40 VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 119 (281)
Q Consensus 40 ~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w 119 (281)
++.+.+|...|+|+.|...|+++++|++|..++||...+. .+.....||...|+.++.+.....++++|.|..|++|
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~---~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA---RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVW 259 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccch---hhhccCCCCccccchhccchhhhhhhhcccCceEEEE
Confidence 4456689999999999999999999999999999996443 4678889999999999999988899999999999999
Q ss_pred eCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcc
Q 023500 120 WAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRT 199 (281)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (281)
....... + .-..+|++.|++++|+|-. +.+.||++++||.+.......- ++. .......
T Consensus 260 rl~~~~p-----v----svLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~p-----rp~---~~~~~~~ 318 (1113)
T KOG0644|consen 260 RLPDGAP-----V----SVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVP-----RPL---KFTEKDL 318 (1113)
T ss_pred ecCCCch-----H----HHHhccccceeeeccCccc----cCCCCCceEeccccccccccCC-----CCC---Ccccccc
Confidence 7655421 1 1224899999999999975 6788999999998632211110 000 0001233
Q ss_pred eEEEEeCCCc-eeeecCCCCcEEEE
Q 023500 200 IFSVHWSREG-IIASGAADDSVQFF 223 (281)
Q Consensus 200 v~~~~~~~~~-~~~~~~~d~~~~~~ 223 (281)
+.++.+...+ -+++++.|+..+.|
T Consensus 319 ~~s~~~~~~~~~f~Tgs~d~ea~n~ 343 (1113)
T KOG0644|consen 319 VDSILFENNGDRFLTGSRDGEARNH 343 (1113)
T ss_pred eeeeeccccccccccccCCcccccc
Confidence 4445554444 36777777766665
No 204
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.56 E-value=5.1e-12 Score=99.14 Aligned_cols=156 Identities=16% Similarity=0.227 Sum_probs=114.0
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeec---CCCCCeeEEEEcCCCCEEEE-e-cCCCcEEEEEecCC
Q 023500 5 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLE---GHENEVKSVSWNASGTLLAT-C-GRDKSVWIWEVMPG 79 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~---~h~~~v~~v~~~~~~~~l~s-~-~~d~~v~~w~~~~~ 79 (281)
+|.++.++ .++|+.+-++. |.|||..+-+ .++++. .+...+.++++++.+.+++- + -.-|.|.+||+.+-
T Consensus 89 ~IL~VrmN--r~RLvV~Lee~-IyIydI~~Mk--lLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl 163 (391)
T KOG2110|consen 89 SILAVRMN--RKRLVVCLEES-IYIYDIKDMK--LLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL 163 (391)
T ss_pred ceEEEEEc--cceEEEEEccc-EEEEecccce--eehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc
Confidence 45555554 44666655554 9999987653 455544 35556767777766677763 2 24589999998644
Q ss_pred CeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeE-EEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEE
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI-KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v-~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 158 (281)
++...+.+|.+.+-+++|+|+|.++|++|+.|+| ||+.+.+.. .+.++.... -...+.+++|+|++++|
T Consensus 164 ---~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~-----kl~eFRRG~--~~~~IySL~Fs~ds~~L 233 (391)
T KOG2110|consen 164 ---QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQ-----KLYEFRRGT--YPVSIYSLSFSPDSQFL 233 (391)
T ss_pred ---eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCcc-----EeeeeeCCc--eeeEEEEEEECCCCCeE
Confidence 3467788999999999999999999999999976 899876542 334443222 14568899999999999
Q ss_pred EEeeCCCcEEEEeCCcc
Q 023500 159 VSCSDDLTIKIWGADIT 175 (281)
Q Consensus 159 ~s~~~d~~i~~w~~~~~ 175 (281)
.+.+..++|.+|.++..
T Consensus 234 ~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 234 AASSNTETVHIFKLEKV 250 (391)
T ss_pred EEecCCCeEEEEEeccc
Confidence 99999999999977643
No 205
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=6.8e-12 Score=93.38 Aligned_cols=197 Identities=17% Similarity=0.240 Sum_probs=128.3
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCce----eeeeee--cCC-----CCCeeEEEEcCCCCEEEEecCCCc
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDY----ECVATL--EGH-----ENEVKSVSWNASGTLLATCGRDKS 70 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~----~~~~~~--~~h-----~~~v~~v~~~~~~~~l~s~~~d~~ 70 (281)
|..+|..++|+ .++|++|+ ||.++=|....... +.+-.. --| .-.|+++...|..+-++.++.|+.
T Consensus 61 hdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~ 137 (325)
T KOG0649|consen 61 HDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGV 137 (325)
T ss_pred cCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeE
Confidence 78899999998 55666665 69999887543211 000000 012 246889999998777777779999
Q ss_pred EEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeecc-----CCcc-c
Q 023500 71 VWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESN-----NGHS-S 144 (281)
Q Consensus 71 v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~-----~~h~-~ 144 (281)
+.-||+..++ ..+++++|.+.+.++.--.....+++|++||++++||..+.. ++..+.... +.|. .
T Consensus 138 ~y~~dlE~G~---i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k-----~v~~ie~yk~~~~lRp~~g~ 209 (325)
T KOG0649|consen 138 IYQVDLEDGR---IQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQK-----HVSMIEPYKNPNLLRPDWGK 209 (325)
T ss_pred EEEEEecCCE---EEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccc-----eeEEeccccChhhcCcccCc
Confidence 9999998775 467899999999999886666789999999999999876542 343333221 2222 2
Q ss_pred cEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEe
Q 023500 145 TIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFV 224 (281)
Q Consensus 145 ~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~ 224 (281)
.+-+++- +.+.|+.|+ ...+.+|.+... ...+.++ -..++..+.|..+ .+++++..+-++-|.
T Consensus 210 wigala~--~edWlvCGg-Gp~lslwhLrss-----------e~t~vfp--ipa~v~~v~F~~d-~vl~~G~g~~v~~~~ 272 (325)
T KOG0649|consen 210 WIGALAV--NEDWLVCGG-GPKLSLWHLRSS-----------ESTCVFP--IPARVHLVDFVDD-CVLIGGEGNHVQSYT 272 (325)
T ss_pred eeEEEec--cCceEEecC-CCceeEEeccCC-----------CceEEEe--cccceeEeeeecc-eEEEeccccceeeee
Confidence 3444443 455676554 557999987532 2223332 2345666666544 455566666677775
Q ss_pred cc
Q 023500 225 ES 226 (281)
Q Consensus 225 ~~ 226 (281)
..
T Consensus 273 l~ 274 (325)
T KOG0649|consen 273 LN 274 (325)
T ss_pred ec
Confidence 44
No 206
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=7.9e-13 Score=112.45 Aligned_cols=212 Identities=15% Similarity=0.198 Sum_probs=128.0
Q ss_pred CCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC---CcEEEEEecCCCeeEEeEeecCCccceeEEEe
Q 023500 24 DATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD---KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQW 100 (281)
Q Consensus 24 d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~ 100 (281)
+..|.+||..+.. ...+..|...+...+|+|+|++|+..+.+ ..|++||+..+.. ..+..+.+| ...++|
T Consensus 183 ~~~i~i~d~dg~~---~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~-~~l~~~~g~---~~~~~w 255 (429)
T PRK01742 183 PYEVRVADYDGFN---QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR-KVVASFRGH---NGAPAF 255 (429)
T ss_pred eEEEEEECCCCCC---ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce-EEEecCCCc---cCceeE
Confidence 4689999876543 23456678889999999999999887654 3699999865532 233334444 346899
Q ss_pred cCCCCeEEEEe-cCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee-CCCcEEEEeCCccccc
Q 023500 101 HPTMDVLFSCS-YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS-DDLTIKIWGADITRMQ 178 (281)
Q Consensus 101 ~p~~~~l~s~s-~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~~w~~~~~~~~ 178 (281)
+|+++.|+.++ .++.+.||.++.... ....+. .+...+....|+|+++.|+..+ .++..++|+++.....
T Consensus 256 SPDG~~La~~~~~~g~~~Iy~~d~~~~----~~~~lt----~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~ 327 (429)
T PRK01742 256 SPDGSRLAFASSKDGVLNIYVMGANGG----TPSQLT----SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG 327 (429)
T ss_pred CCCCCEEEEEEecCCcEEEEEEECCCC----CeEeec----cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 99999877654 688776664322110 112221 3445577899999999766544 6788999976432110
Q ss_pred cCCCCcccceeEEeecccCcceEEEEeCCCce-eeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcC
Q 023500 179 SGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP 257 (281)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 257 (281)
.... . +.. ....|+|++. ++..+.++ +..|+...+. . .. +. ..+ ......|+|
T Consensus 328 ----------~~~l-~-~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~-----~-~~-lt--~~~--~~~~~~~sP 381 (429)
T PRK01742 328 ----------ASLV-G-GRG--YSAQISADGKTLVMINGDN-VVKQDLTSGS-----T-EV-LS--STF--LDESPSISP 381 (429)
T ss_pred ----------eEEe-c-CCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCC-----e-EE-ec--CCC--CCCCceECC
Confidence 0011 1 111 2356788764 44444444 4446543321 1 11 11 111 234578999
Q ss_pred CCCeeEEEeCCCCeEEEEEc
Q 023500 258 GERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 258 ~~~~~~~s~~~Dg~v~iw~~ 277 (281)
+++ +|+.++.++..++|.+
T Consensus 382 dG~-~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 382 NGI-MIIYSSTQGLGKVLQL 400 (429)
T ss_pred CCC-EEEEEEcCCCceEEEE
Confidence 986 4666777888888775
No 207
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.56 E-value=8e-14 Score=114.03 Aligned_cols=138 Identities=20% Similarity=0.366 Sum_probs=99.8
Q ss_pred ccceeEEEEcCCC-CEEEEeeCCCcEEEEecCC---------------Ccee-----------eeeeecCCCCCeeEEEE
Q 023500 3 TRTVRSCAWSPSG-KLLATASFDATTCIWEDVG---------------GDYE-----------CVATLEGHENEVKSVSW 55 (281)
Q Consensus 3 ~~~i~~~~~~~~~-~~l~tg~~d~~i~lw~~~~---------------~~~~-----------~~~~~~~h~~~v~~v~~ 55 (281)
+..|+|+.|-|-+ ..++.+-.+|.+.+||..- ..+. ++..+.--.+.|+.++|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 4679999999954 4566677889999996321 0111 11111112357889999
Q ss_pred cCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeee
Q 023500 56 NASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTI 135 (281)
Q Consensus 56 ~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~ 135 (281)
+|||++||+.|+||.+|||+..... .+.+.+..-....||+|+||+++|++|++|.-|.||-+.+.+ .+.
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt~e---Llg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erR-----VVA-- 368 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDTQE---LLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERR-----VVA-- 368 (636)
T ss_pred cCCCceEEEEecCceEEEeeccHHH---HHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccce-----EEE--
Confidence 9999999999999999999985332 223333445678999999999999999999999999766432 222
Q ss_pred eeccCCccccEEEEEEc
Q 023500 136 SESNNGHSSTIWALSFN 152 (281)
Q Consensus 136 ~~~~~~h~~~v~~~~~~ 152 (281)
...+|+..|..++|.
T Consensus 369 --RGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 369 --RGQGHKSWVSVVAFD 383 (636)
T ss_pred --eccccccceeeEeec
Confidence 224899999999987
No 208
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.54 E-value=4.1e-12 Score=113.23 Aligned_cols=231 Identities=14% Similarity=0.175 Sum_probs=141.4
Q ss_pred eeeeeecCCCCCeeEEEEcCC-CCEEEEecCCCcEEEEEecCC----CeeEEeEeecCCccceeEEEecCCCCeEEEEec
Q 023500 38 ECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPG----NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY 112 (281)
Q Consensus 38 ~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~~w~~~~~----~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~ 112 (281)
..++++..|...|..++.++. +.+++|||.||+||+|+++.- ....+..++..-...+.++...+.++.+|.++.
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence 457888899999999988774 599999999999999998632 122233334334567889999999999999999
Q ss_pred CCeEEEEeCCCCCCCCceee-------------eeeee------c---------------------------cCCccccE
Q 023500 113 DNTIKVWWAEDTDSDNWHCV-------------QTISE------S---------------------------NNGHSSTI 146 (281)
Q Consensus 113 d~~v~~w~~~~~~~~~~~~~-------------~~~~~------~---------------------------~~~h~~~v 146 (281)
||.|.+..++........+. ..... . .....+.|
T Consensus 1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~v 1198 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLV 1198 (1431)
T ss_pred CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccce
Confidence 99999998876211100000 00000 0 00113679
Q ss_pred EEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC--C--c-eeeecC-CCCcE
Q 023500 147 WALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR--E--G-IIASGA-ADDSV 220 (281)
Q Consensus 147 ~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~--~-~~~~~~-~d~~~ 220 (281)
++++.+|.+..+++|...|.+.+||++.+-+. .+| ...+..++..+...+ . . .+.++. ..+.+
T Consensus 1199 TSi~idp~~~WlviGts~G~l~lWDLRF~~~i-----~sw------~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nev 1267 (1431)
T KOG1240|consen 1199 TSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPI-----LSW------EHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEV 1267 (1431)
T ss_pred eEEEecCCceEEEEecCCceEEEEEeecCcee-----ecc------cCcccCCcceEEeeccCCCCceEEEecccCCCce
Confidence 99999999999999999999999998754321 112 111234444443332 1 2 344444 56777
Q ss_pred EEEecccCCCcC----C---ccceeeeeec---cCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 221 QFFVESKDDLID----G---PSYKMLLKKE---KAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 221 ~~~~~~~~~~~~----~---~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
.+|....+.... + +......... +.+......+.+...+ .++.+|+.|..||.||...+
T Consensus 1268 s~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~-~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1268 STWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKN-GFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred eeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCC-ceeeecCCccceeeccCCCc
Confidence 788554431100 0 0000000000 0122223334444433 46789999999999998764
No 209
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=2e-11 Score=95.79 Aligned_cols=149 Identities=28% Similarity=0.539 Sum_probs=103.0
Q ss_pred ccceeEEEEcCC-CCEEEEeeCCCcEEEEecCCC----c------eee--eeeecCCCCCeeEEEEcCCCCEEEEecC-C
Q 023500 3 TRTVRSCAWSPS-GKLLATASFDATTCIWEDVGG----D------YEC--VATLEGHENEVKSVSWNASGTLLATCGR-D 68 (281)
Q Consensus 3 ~~~i~~~~~~~~-~~~l~tg~~d~~i~lw~~~~~----~------~~~--~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d 68 (281)
++.|++++|-|- ++-|+.|+..| |+||..... . --+ +....|| -+|++++|++||..+++++. |
T Consensus 140 QrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gs 217 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGS 217 (445)
T ss_pred hcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCc
Confidence 478999999994 56788888655 889974321 0 001 1222344 68999999999999999884 6
Q ss_pred CcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEE
Q 023500 69 KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWA 148 (281)
Q Consensus 69 ~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 148 (281)
..|++||...+... ++. ...-+.+.-++|+|++.++++++-|+..++|..... |.+.+... -.+.|+.
T Consensus 218 ssi~iWdpdtg~~~-pL~--~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~----wt~erw~l-----gsgrvqt 285 (445)
T KOG2139|consen 218 SSIMIWDPDTGQKI-PLI--PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQS----WTKERWIL-----GSGRVQT 285 (445)
T ss_pred ceEEEEcCCCCCcc-ccc--ccCCCceeeEEEcCCCCEEEEecccceeeeehhccc----ceecceec-----cCCceee
Confidence 79999998765432 111 123456889999999999999999999999944322 22222221 1347999
Q ss_pred EEEccCCCE-EEEeeCCC
Q 023500 149 LSFNAKGDK-LVSCSDDL 165 (281)
Q Consensus 149 ~~~~~~~~~-l~s~~~d~ 165 (281)
..|+|.|.. |++++.+.
T Consensus 286 acWspcGsfLLf~~sgsp 303 (445)
T KOG2139|consen 286 ACWSPCGSFLLFACSGSP 303 (445)
T ss_pred eeecCCCCEEEEEEcCCc
Confidence 999999985 44555443
No 210
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.51 E-value=1e-13 Score=113.42 Aligned_cols=94 Identities=27% Similarity=0.404 Sum_probs=79.5
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCee
Q 023500 3 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF 82 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~ 82 (281)
+..|+..+|+|||++||+.+.||.++|++..+.. .+..++.+=+...|++|||||++|++||.|.-|.||.+...
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e--Llg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er--- 364 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE--LLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER--- 364 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHH--HHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccc---
Confidence 3578899999999999999999999999876543 34555666788999999999999999999999999998543
Q ss_pred EEeEeecCCccceeEEEec
Q 023500 83 ECVSVLQGHAQDVKMVQWH 101 (281)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~~ 101 (281)
..+..-.+|.+.|..|+|.
T Consensus 365 RVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 365 RVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred eEEEeccccccceeeEeec
Confidence 3455567899999999987
No 211
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.50 E-value=1.8e-12 Score=97.79 Aligned_cols=109 Identities=24% Similarity=0.514 Sum_probs=82.1
Q ss_pred cceeEEEEcCCCCEEEE--eeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC---CcEEEEEecC
Q 023500 4 RTVRSCAWSPSGKLLAT--ASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD---KSVWIWEVMP 78 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~t--g~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---~~v~~w~~~~ 78 (281)
.+|.+++|+|+|+.||. |..++.+.|||... +.+..+. ...++.+.|+|+|++|+.+|.+ |.|.+||+..
T Consensus 60 ~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~---~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~ 134 (194)
T PF08662_consen 60 GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG---KKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK 134 (194)
T ss_pred CceEEEEECcCCCEEEEEEccCCcccEEEcCcc---cEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 46999999999997654 44667999999853 3345543 5677899999999999988754 5799999973
Q ss_pred CCeeEEeEeecCCccceeEEEecCCCCeEEEEec------CCeEEEEeCC
Q 023500 79 GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY------DNTIKVWWAE 122 (281)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~------d~~v~~w~~~ 122 (281)
. +.+... +...++.++|+|++.++++++. |+.++||+..
T Consensus 135 ~---~~i~~~--~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 135 K---KKISTF--EHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred C---EEeecc--ccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 3 233332 2335789999999999988775 6788888664
No 212
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=8.1e-12 Score=97.91 Aligned_cols=181 Identities=20% Similarity=0.343 Sum_probs=122.3
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCC-CCEEEEecCCCcEEEEEecCCCee-
Q 023500 5 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPGNEF- 82 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~~w~~~~~~~~- 82 (281)
.+..++|++--.-||.+.+|-.|++|+.+......++. .-...|+|++|.|. +.-|+.|+..| |.+|........
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks--~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~ 176 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKS--VSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNAN 176 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecc--hhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccc
Confidence 46778999865667899999999999876532221222 23478999999994 56777777754 889987532111
Q ss_pred E--------E--eEeecCCccceeEEEecCCCCeEEEEecC-CeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEE
Q 023500 83 E--------C--VSVLQGHAQDVKMVQWHPTMDVLFSCSYD-NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF 151 (281)
Q Consensus 83 ~--------~--~~~~~~~~~~v~~v~~~p~~~~l~s~s~d-~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 151 (281)
. + +....+| ..|++++|++++..++++|.+ ..|.+||++.....+ ... ...+.+.-+.|
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~p-----L~~----~glgg~slLkw 246 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIP-----LIP----KGLGGFSLLKW 246 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccc-----ccc----cCCCceeeEEE
Confidence 0 1 1223455 469999999999999998876 588999887654211 111 11355788999
Q ss_pred ccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce
Q 023500 152 NAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI 210 (281)
Q Consensus 152 ~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 210 (281)
|||+++|....-|+..++|.... .|....-. .....+...+|+|+|.
T Consensus 247 SPdgd~lfaAt~davfrlw~e~q----------~wt~erw~--lgsgrvqtacWspcGs 293 (445)
T KOG2139|consen 247 SPDGDVLFAATCDAVFRLWQENQ----------SWTKERWI--LGSGRVQTACWSPCGS 293 (445)
T ss_pred cCCCCEEEEecccceeeeehhcc----------cceeccee--ccCCceeeeeecCCCC
Confidence 99999999999999999995321 11111111 1234678889999884
No 213
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=8.4e-13 Score=104.43 Aligned_cols=129 Identities=13% Similarity=0.237 Sum_probs=100.3
Q ss_pred eeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCC---CeeEEeEeec-CCccceeEEEecCCCCeEEEEecCC
Q 023500 39 CVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG---NEFECVSVLQ-GHAQDVKMVQWHPTMDVLFSCSYDN 114 (281)
Q Consensus 39 ~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~---~~~~~~~~~~-~~~~~v~~v~~~p~~~~l~s~s~d~ 114 (281)
+.+.+.+|.+.|+++.|+.++++|++||+|..+++|.+..- +..+++.... .|.+.|.|++|......+++|..++
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence 44566789999999999999999999999999999997421 1112333322 3568999999999999999999999
Q ss_pred eEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCc
Q 023500 115 TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI 174 (281)
Q Consensus 115 ~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~ 174 (281)
+|...|+++... +.-.. ....++.|..+..+|....|++.+.++.+.+||..-
T Consensus 128 ~VI~HDiEt~qs-----i~V~~--~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd 180 (609)
T KOG4227|consen 128 TVIKHDIETKQS-----IYVAN--ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRD 180 (609)
T ss_pred eeEeeeccccee-----eeeec--ccCcccceeecccCCCCceEEEEecCceEEEEeccC
Confidence 999999887532 11111 012345899999999988999999999999998763
No 214
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=1.8e-11 Score=96.74 Aligned_cols=251 Identities=16% Similarity=0.189 Sum_probs=155.9
Q ss_pred ceeEEEEcCCCC--EEEEeeCCCcEEEEecCCCceee----eeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 023500 5 TVRSCAWSPSGK--LLATASFDATTCIWEDVGGDYEC----VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP 78 (281)
Q Consensus 5 ~i~~~~~~~~~~--~l~tg~~d~~i~lw~~~~~~~~~----~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~ 78 (281)
.|..++|.-+++ ++...+.|..+..++........ +.+.....+.|..++. ....|++|-.+|.+.+|....
T Consensus 57 ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~--~dg~Litc~~sG~l~~~~~k~ 134 (412)
T KOG3881|consen 57 RISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL--ADGTLITCVSSGNLQVRHDKS 134 (412)
T ss_pred hhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhh--cCCEEEEEecCCcEEEEeccC
Confidence 455666766554 56555567667666543332111 1122334455555443 234678888889999999874
Q ss_pred CCee-EEeEeecCCccceeEEEecCCCCe-EEEEecC--CeEEEEeCCCCCCCCceeeeeeeecc-CCccccEEEEEEcc
Q 023500 79 GNEF-ECVSVLQGHAQDVKMVQWHPTMDV-LFSCSYD--NTIKVWWAEDTDSDNWHCVQTISESN-NGHSSTIWALSFNA 153 (281)
Q Consensus 79 ~~~~-~~~~~~~~~~~~v~~v~~~p~~~~-l~s~s~d--~~v~~w~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~ 153 (281)
+..- .....+..+ +.+..+.-+|.... +++|+.. ..+++|+.+.. ...|..---..... -.-+-.++.+.|-+
T Consensus 135 ~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~-~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~ 212 (412)
T KOG3881|consen 135 GDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS-KQIWSAKNVPNDRLGLRVPVWITDIRFLE 212 (412)
T ss_pred CccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccc-eeeeeccCCCCccccceeeeeeccceecC
Confidence 4310 112223222 44666666676655 5568888 78999988754 11110000000000 01134456888887
Q ss_pred C--CCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCC
Q 023500 154 K--GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDL 230 (281)
Q Consensus 154 ~--~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~ 230 (281)
. ...|++|+.-+.+++||+.-.. ++...+ .+.+.++.++...|++ .+.++..-+.+..|+.+..
T Consensus 213 g~~~~~fat~T~~hqvR~YDt~~qR----------RPV~~f-d~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~-- 279 (412)
T KOG3881|consen 213 GSPNYKFATITRYHQVRLYDTRHQR----------RPVAQF-DFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG-- 279 (412)
T ss_pred CCCCceEEEEecceeEEEecCcccC----------cceeEe-ccccCcceeeeecCCCcEEEEecccchhheecccCc--
Confidence 6 7899999999999999986322 333333 3457788888888875 5677777788888865442
Q ss_pred cCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 231 IDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 231 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
+.......+-.+.|+++..+|.. +++++||.|..|||+|+.+
T Consensus 280 ------kl~g~~~kg~tGsirsih~hp~~-~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 280 ------KLLGCGLKGITGSIRSIHCHPTH-PVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred ------eeeccccCCccCCcceEEEcCCC-ceEEeeccceeEEEeeccc
Confidence 22333355667889999999975 4799999999999999876
No 215
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.47 E-value=9.5e-12 Score=96.95 Aligned_cols=270 Identities=15% Similarity=0.243 Sum_probs=162.9
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCC---CceeeeeeecCCC------------CCeeEEEEcCCCC--EEEEec
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVG---GDYECVATLEGHE------------NEVKSVSWNASGT--LLATCG 66 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~---~~~~~~~~~~~h~------------~~v~~v~~~~~~~--~l~s~~ 66 (281)
+.|.++.|..+|.+||||..+|-+.++.... +++.....++.|. +.|+.+.|.+++. .++...
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 6789999999999999999999999997532 2222333444444 4578889987654 466777
Q ss_pred CCCcEEEEEecCCCeeE--------------------------------EeEee-cCCccceeEEEecCCCCeEEEEecC
Q 023500 67 RDKSVWIWEVMPGNEFE--------------------------------CVSVL-QGHAQDVKMVQWHPTMDVLFSCSYD 113 (281)
Q Consensus 67 ~d~~v~~w~~~~~~~~~--------------------------------~~~~~-~~~~~~v~~v~~~p~~~~l~s~s~d 113 (281)
.|++|++|.+....... |.+++ .+|..-|+++.++.+...+++ +.|
T Consensus 106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS-ADd 184 (433)
T KOG1354|consen 106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS-ADD 184 (433)
T ss_pred CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee-ccc
Confidence 89999999986322110 11111 368888999999999998888 457
Q ss_pred CeEEEEeCCCCCCCCceeeeeeee-ccCCccccEEEEEEccCC-CEEEEeeCCCcEEEEeCCcccc-c----cCCCCccc
Q 023500 114 NTIKVWWAEDTDSDNWHCVQTISE-SNNGHSSTIWALSFNAKG-DKLVSCSDDLTIKIWGADITRM-Q----SGDGYASW 186 (281)
Q Consensus 114 ~~v~~w~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~~w~~~~~~~-~----~~~~~~~~ 186 (281)
=.|.+|.++-.+. .+. +..+.. ....-+..|++..|+|.. ..|+-.+..|+|++.|++.... . ..+....
T Consensus 185 LRINLWnlei~d~-sFn-IVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped- 261 (433)
T KOG1354|consen 185 LRINLWNLEIIDQ-SFN-IVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED- 261 (433)
T ss_pred eeeeeccccccCC-cee-EEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC-
Confidence 7999998765431 111 111100 000114567889999964 5677778899999998862210 0 0000000
Q ss_pred ceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCc-CCccceeee----eeccCC--CCCeeEEEEcCCC
Q 023500 187 RHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLI-DGPSYKMLL----KKEKAH--DMDVNSVQWSPGE 259 (281)
Q Consensus 187 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~h--~~~v~~~~~~~~~ 259 (281)
.....+...-...|..+.|+.+|.++..=.-.++.+|+...+... .....+... +..... -..--.+.|+-++
T Consensus 262 p~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~ 341 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND 341 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence 000000001134566788999987766555578999988543211 000000000 000000 1122357898776
Q ss_pred CeeEEEeCCCCeEEEEEcc
Q 023500 260 RRLLASASDDGMIKIWELA 278 (281)
Q Consensus 260 ~~~~~s~~~Dg~v~iw~~~ 278 (281)
. .++|||.....++++..
T Consensus 342 ~-~v~TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 342 S-YVMTGSYNNVFRVFNLA 359 (433)
T ss_pred c-eEecccccceEEEecCC
Confidence 5 57899999999999854
No 216
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.47 E-value=8e-13 Score=115.77 Aligned_cols=148 Identities=21% Similarity=0.379 Sum_probs=119.5
Q ss_pred EEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeec
Q 023500 10 AWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQ 89 (281)
Q Consensus 10 ~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~ 89 (281)
.++++.=++++|+.-+.|.+|+..... .+. .+.||++.+..+.|+-||+++++.|+|+++|+|++.+.+... .+.-
T Consensus 140 g~s~~~~~i~~gsv~~~iivW~~~~dn-~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~f 215 (967)
T KOG0974|consen 140 GDSAEELYIASGSVFGEIIVWKPHEDN-KPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTGF 215 (967)
T ss_pred eccCcEEEEEeccccccEEEEeccccC-Ccc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--cccc
Confidence 345555588999999999999987333 223 578999999999999999999999999999999997665422 3566
Q ss_pred CCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCc-cccEEEEEEccCCCEEEEeeCCCcEE
Q 023500 90 GHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGH-SSTIWALSFNAKGDKLVSCSDDLTIK 168 (281)
Q Consensus 90 ~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~d~~i~ 168 (281)
+|...+..+.|+|. .++++++|.++++|..+... ++.. .+| ...++.++..++.-..+|++.||.++
T Consensus 216 gHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~---------l~~y-~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk 283 (967)
T KOG0974|consen 216 GHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQ---------LEVY-DEHSGKGIWKIAVPIGVIIKVTGGNDSTLK 283 (967)
T ss_pred cccceeEEEEeccc--eeEEeccceEEEEEecccce---------ehhh-hhhhhcceeEEEEcCCceEEEeeccCcchh
Confidence 89999999999998 99999999999999655432 1111 233 35689999999988999999999999
Q ss_pred EEeCC
Q 023500 169 IWGAD 173 (281)
Q Consensus 169 ~w~~~ 173 (281)
+|+..
T Consensus 284 ~~~l~ 288 (967)
T KOG0974|consen 284 LWDLN 288 (967)
T ss_pred hhhhh
Confidence 99864
No 217
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.47 E-value=1.4e-12 Score=105.06 Aligned_cols=222 Identities=15% Similarity=0.217 Sum_probs=148.8
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEecCCCceee-------------------------------------eeeecCCCCC
Q 023500 7 RSCAWSPSGKLLATASFDATTCIWEDVGGDYEC-------------------------------------VATLEGHENE 49 (281)
Q Consensus 7 ~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~-------------------------------------~~~~~~h~~~ 49 (281)
..+.++.+|++|+.|+.-|.+..+|..+...-+ ++-++. ...
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~-~~~ 211 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKR-HIR 211 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhh-cCc
Confidence 357788899999999988988888765542111 111111 134
Q ss_pred eeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCc
Q 023500 50 VKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNW 129 (281)
Q Consensus 50 v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~ 129 (281)
|..+.|-|..-+|++++..|-++.-|+..++. +..+......+...+-+|-...+-.|...|+|.+|......
T Consensus 212 v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gkl---Va~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske---- 284 (545)
T KOG1272|consen 212 VARLEFLPYHFLLVAASEAGFLKYQDVSTGKL---VASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE---- 284 (545)
T ss_pred hhhhcccchhheeeecccCCceEEEeechhhh---hHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc----
Confidence 66678889888899999999999999977653 34444555667777888988899999999999999554322
Q ss_pred eeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc
Q 023500 130 HCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG 209 (281)
Q Consensus 130 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 209 (281)
.+..+ -.|+++|.++++.++|.+++|.+.|..++|||++.... +.++. ...+...++++..|
T Consensus 285 -PLvKi----LcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q-----------l~t~~--tp~~a~~ls~Sqkg 346 (545)
T KOG1272|consen 285 -PLVKI----LCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ-----------LHTYR--TPHPASNLSLSQKG 346 (545)
T ss_pred -hHHHH----HhcCCCcceEEECCCCcEEeecccccceeEeeeccccc-----------cceee--cCCCcccccccccc
Confidence 12222 26999999999999999999999999999999875431 11111 12344556778888
Q ss_pred eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCC
Q 023500 210 IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGE 259 (281)
Q Consensus 210 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 259 (281)
+++.+-. ..+.+|....... +......+... -..+|..+.|+|-.
T Consensus 347 lLA~~~G-~~v~iw~d~~~~s--~~~~~pYm~H~--~~~~V~~l~FcP~E 391 (545)
T KOG1272|consen 347 LLALSYG-DHVQIWKDALKGS--GHGETPYMNHR--CGGPVEDLRFCPYE 391 (545)
T ss_pred ceeeecC-CeeeeehhhhcCC--CCCCcchhhhc--cCcccccceeccHH
Confidence 8776544 4678884322110 00000111111 13478888999854
No 218
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=2.2e-11 Score=103.58 Aligned_cols=161 Identities=19% Similarity=0.229 Sum_probs=103.6
Q ss_pred CccceeEEEEcCCCCEEEEeeCC---CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEE-EecCCCcEEEEEec
Q 023500 2 HTRTVRSCAWSPSGKLLATASFD---ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLA-TCGRDKSVWIWEVM 77 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d---~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~v~~w~~~ 77 (281)
+...+...+|+|||+.|+..+.+ ..|.+||..+++...+. ...+.+.+.+|+|||+.|+ +.+.++...+|.+.
T Consensus 194 ~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~---~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 270 (427)
T PRK02889 194 SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA---NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVN 270 (427)
T ss_pred CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEee---cCCCCccceEECCCCCEEEEEEccCCCceEEEEE
Confidence 34567889999999998877643 35899998777543333 2345566889999999876 66788887787764
Q ss_pred CCCeeEEeEeecCCccceeEEEecCCCCeEEEEec-CCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCC
Q 023500 78 PGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY-DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD 156 (281)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~-d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 156 (281)
.... ....+..+........|+|++..++.++. ++...+|.+..... . ...+.. .+ .......|+|+++
T Consensus 271 ~~~~--~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g-~---~~~lt~--~g--~~~~~~~~SpDG~ 340 (427)
T PRK02889 271 ADGS--GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG-A---AQRVTF--TG--SYNTSPRISPDGK 340 (427)
T ss_pred CCCC--CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC-c---eEEEec--CC--CCcCceEECCCCC
Confidence 3211 12334445555667889999998776664 46667775532211 1 111111 11 1223568999999
Q ss_pred EEEEeeCCC---cEEEEeCCcc
Q 023500 157 KLVSCSDDL---TIKIWGADIT 175 (281)
Q Consensus 157 ~l~s~~~d~---~i~~w~~~~~ 175 (281)
+++..+.++ .|.+||...+
T Consensus 341 ~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 341 LLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred EEEEEEccCCcEEEEEEECCCC
Confidence 988776554 5888887543
No 219
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=7.4e-11 Score=100.30 Aligned_cols=213 Identities=18% Similarity=0.225 Sum_probs=124.9
Q ss_pred cceeEEEEcCCCCEEEEeeC---CCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEe-cCCC--cEEEEEec
Q 023500 4 RTVRSCAWSPSGKLLATASF---DATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATC-GRDK--SVWIWEVM 77 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~---d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~-~~d~--~v~~w~~~ 77 (281)
..+...+|+|||+.||..+. +..+.+|+..+++...+..+.++ +....|+|||++|+.. +.++ .|.+||+.
T Consensus 199 ~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~---~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~ 275 (429)
T PRK03629 199 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH---NGAPAFSPDGSKLAFALSKTGSLNLYVMDLA 275 (429)
T ss_pred CceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCC---cCCeEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence 46788999999998886542 35788998877765444444443 4468999999987754 4444 58888886
Q ss_pred CCCeeEEeEeecCCccceeEEEecCCCCeEEEEecC-CeEEEEe--CCCCCCCCceeeeeeeeccCCccccEEEEEEccC
Q 023500 78 PGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD-NTIKVWW--AEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK 154 (281)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d-~~v~~w~--~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 154 (281)
.+.. ..+..+...+....|+|+++.|+.++.+ +...+|. +.... ...+.. +........|+|+
T Consensus 276 tg~~----~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~------~~~lt~----~~~~~~~~~~SpD 341 (429)
T PRK03629 276 SGQI----RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA------PQRITW----EGSQNQDADVSSD 341 (429)
T ss_pred CCCE----EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC------eEEeec----CCCCccCEEECCC
Confidence 5532 2233344567889999999988776654 4555654 33221 112211 1223456889999
Q ss_pred CCEEEEeeCC-C--cEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce-eeecCCCCc---EEEEeccc
Q 023500 155 GDKLVSCSDD-L--TIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDS---VQFFVESK 227 (281)
Q Consensus 155 ~~~l~s~~~d-~--~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~---~~~~~~~~ 227 (281)
++.++..+.+ + .|.+||.+.+... .+ ... .......|+|+|. ++..+.++. +.++....
T Consensus 342 G~~Ia~~~~~~g~~~I~~~dl~~g~~~---------~L---t~~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G 407 (429)
T PRK03629 342 GKFMVMVSSNGGQQHIAKQDLATGGVQ---------VL---TDT--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG 407 (429)
T ss_pred CCEEEEEEccCCCceEEEEECCCCCeE---------Ee---CCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 9988776543 2 4666776543211 11 110 1122456788874 443343432 33332211
Q ss_pred CCCcCCccceeeeeeccCCCCCeeEEEEcC
Q 023500 228 DDLIDGPSYKMLLKKEKAHDMDVNSVQWSP 257 (281)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 257 (281)
. .......|...+...+|+|
T Consensus 408 ------~----~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 408 ------R----FKARLPATDGQVKFPAWSP 427 (429)
T ss_pred ------C----CeEECccCCCCcCCcccCC
Confidence 1 1122335677788888987
No 220
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=2.3e-12 Score=104.48 Aligned_cols=263 Identities=18% Similarity=0.268 Sum_probs=170.7
Q ss_pred CccceeEEEEcCC--CCEEEEeeCCCcEEEEecC-CCceeeeeeecCCCCCeeEEEEcCCC-CEEEEecCCCcEEEEEec
Q 023500 2 HTRTVRSCAWSPS--GKLLATASFDATTCIWEDV-GGDYECVATLEGHENEVKSVSWNASG-TLLATCGRDKSVWIWEVM 77 (281)
Q Consensus 2 h~~~i~~~~~~~~--~~~l~tg~~d~~i~lw~~~-~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~v~~w~~~ 77 (281)
|...|....|-|. .+-+++++.||.+++=... ++..+..+.+..|.++|.-++.-|+. .-|.|+|.|+.++-.|+.
T Consensus 184 H~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr 263 (559)
T KOG1334|consen 184 HCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLR 263 (559)
T ss_pred cccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeec
Confidence 5556666777773 3568899999999987653 34444456677899999999999964 569999999999999998
Q ss_pred CCCeeEEeEeecCCcc---ceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCC------ceeeeeeeeccCCccccEE
Q 023500 78 PGNEFECVSVLQGHAQ---DVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDN------WHCVQTISESNNGHSSTIW 147 (281)
Q Consensus 78 ~~~~~~~~~~~~~~~~---~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~------~~~~~~~~~~~~~h~~~v~ 147 (281)
...+......-..+.. ....++.+|... .+++++.|--+++||........ ..|...+. ....-.|+
T Consensus 264 ~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~---~d~~v~IT 340 (559)
T KOG1334|consen 264 QDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLV---EDDPVNIT 340 (559)
T ss_pred cCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCcccc---ccCcccce
Confidence 6654333322222333 457888888765 78899999999999876543221 11111111 12245689
Q ss_pred EEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccc-eeEE-eecc-cCcceEEEEeC-C-CceeeecCCCCcEEE
Q 023500 148 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWR-HLCT-ISGY-HDRTIFSVHWS-R-EGIIASGAADDSVQF 222 (281)
Q Consensus 148 ~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~-~~~~-~~~~-~~~~v~~~~~~-~-~~~~~~~~~d~~~~~ 222 (281)
+++|+.++.-|++...|-.|.++.-..+.-.........+ .... +++. ...+|..+.|- | ..++++|+.=|.|-+
T Consensus 341 gl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFi 420 (559)
T KOG1334|consen 341 GLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFI 420 (559)
T ss_pred eEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEE
Confidence 9999987776667777878888854332221111111000 1111 2221 24567777665 3 567888888899999
Q ss_pred EecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 223 FVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
|+.+...++ +++.-. -| -|+|+.-+|--+ +|||+|-|.-||||-.
T Consensus 421 W~K~t~eii------~~MegD-r~--VVNCLEpHP~~P-vLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 421 WDKKTGEII------RFMEGD-RH--VVNCLEPHPHLP-VLASSGIDHDVKIWTP 465 (559)
T ss_pred EecchhHHH------HHhhcc-cc--eEeccCCCCCCc-hhhccCCccceeeecC
Confidence 966543221 222211 12 689999999765 8999999999999976
No 221
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=5.2e-11 Score=101.56 Aligned_cols=156 Identities=21% Similarity=0.262 Sum_probs=100.5
Q ss_pred ccceeEEEEcCCCCEEEEeeCC---CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEE-EecCCC--cEEEEEe
Q 023500 3 TRTVRSCAWSPSGKLLATASFD---ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLA-TCGRDK--SVWIWEV 76 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d---~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~--~v~~w~~ 76 (281)
...+...+|+|||+.|+..+.+ ..|.+|+..+++...+. .+.+...+.+|+|+|+.|+ +.+.++ .|.+||+
T Consensus 203 ~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~---~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~ 279 (433)
T PRK04922 203 AEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVA---SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDL 279 (433)
T ss_pred CCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEec---cCCCCccCceECCCCCEEEEEEeCCCCceEEEEEC
Confidence 3467788999999998887744 36899998776544333 3344455789999999765 555555 5888888
Q ss_pred cCCCeeEEeEeecCCccceeEEEecCCCCeEEEEec-CCe--EEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEcc
Q 023500 77 MPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY-DNT--IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA 153 (281)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~-d~~--v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 153 (281)
..+. ...+..+......+.|+|++..++.++. ++. |.++++.... ...+.. +.......+|+|
T Consensus 280 ~~g~----~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~------~~~lt~----~g~~~~~~~~Sp 345 (433)
T PRK04922 280 GSRQ----LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS------AERLTF----QGNYNARASVSP 345 (433)
T ss_pred CCCC----eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC------eEEeec----CCCCccCEEECC
Confidence 6553 2234445445567899999998876664 444 4444443321 111211 112234689999
Q ss_pred CCCEEEEeeCCC---cEEEEeCCcc
Q 023500 154 KGDKLVSCSDDL---TIKIWGADIT 175 (281)
Q Consensus 154 ~~~~l~s~~~d~---~i~~w~~~~~ 175 (281)
+++.++..+.++ .|.+||...+
T Consensus 346 DG~~Ia~~~~~~~~~~I~v~d~~~g 370 (433)
T PRK04922 346 DGKKIAMVHGSGGQYRIAVMDLSTG 370 (433)
T ss_pred CCCEEEEEECCCCceeEEEEECCCC
Confidence 999887765433 5788887543
No 222
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.44 E-value=2.1e-11 Score=95.00 Aligned_cols=163 Identities=19% Similarity=0.426 Sum_probs=121.6
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCC--CceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEec-CCC
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVG--GDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVM-PGN 80 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~--~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~-~~~ 80 (281)
.+++++++++..++|..|-..|++.=+.... ++...+.....|...|..+-|+-...++++.+.|..+. |-.. .+.
T Consensus 69 ~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e~~~ 147 (404)
T KOG1409|consen 69 SPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTESGN 147 (404)
T ss_pred CCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceE-EEeeccCC
Confidence 5678889999999999998888877664321 12223455667999999999988888999988887644 5322 110
Q ss_pred --------------------------------------eeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCC
Q 023500 81 --------------------------------------EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAE 122 (281)
Q Consensus 81 --------------------------------------~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~ 122 (281)
....+..+.+|...+++++|.|....+++|+.|..+.+||+.
T Consensus 148 ~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdig 227 (404)
T KOG1409|consen 148 RLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIG 227 (404)
T ss_pred cccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEecc
Confidence 001234567899999999999999999999999999999886
Q ss_pred CCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCcc
Q 023500 123 DTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADIT 175 (281)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~ 175 (281)
.... + .-...+|...|..+..-+.-+.|.+++.||.|.+|+.+..
T Consensus 228 g~~g-----~---~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 228 GRKG-----T---AYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred CCcc-----e---eeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 5421 1 1112378888988888887789999999999999998643
No 223
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.43 E-value=3.6e-12 Score=98.78 Aligned_cols=144 Identities=18% Similarity=0.300 Sum_probs=91.5
Q ss_pred cceeEEEEcCCCCE-EEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCee
Q 023500 4 RTVRSCAWSPSGKL-LATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF 82 (281)
Q Consensus 4 ~~i~~~~~~~~~~~-l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~ 82 (281)
..+..+.|+|||+. |.+...|-.|.+|...+.....+ .--+..+..++|+|||++.+.++.........+...+.+
T Consensus 92 agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~---~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W 168 (447)
T KOG4497|consen 92 AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL---PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAW 168 (447)
T ss_pred CcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe---cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHH
Confidence 56788999999964 55667778899999877643222 222346789999999999888765322122222222222
Q ss_pred EEeEeecCCccceeEEEecCCCCeEEEEecCCeE--EEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEE
Q 023500 83 ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI--KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v--~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
..++.+.-..-..+.+.|+|+++.++. .|+.+ +++ ..+ -.-.+..++|+|.+++|+.
T Consensus 169 ~ll~~f~~dT~DltgieWsPdg~~laV--wd~~Leykv~--------------aYe-----~~lG~k~v~wsP~~qflav 227 (447)
T KOG4497|consen 169 ILLKEFKLDTIDLTGIEWSPDGNWLAV--WDNVLEYKVY--------------AYE-----RGLGLKFVEWSPCNQFLAV 227 (447)
T ss_pred HHHHhcCCCcccccCceECCCCcEEEE--ecchhhheee--------------eee-----eccceeEEEeccccceEEe
Confidence 222233333445788899999887776 33321 111 011 0134778999999999999
Q ss_pred eeCCCcEEEEe
Q 023500 161 CSDDLTIKIWG 171 (281)
Q Consensus 161 ~~~d~~i~~w~ 171 (281)
|+.|+++|+-+
T Consensus 228 GsyD~~lrvln 238 (447)
T KOG4497|consen 228 GSYDQMLRVLN 238 (447)
T ss_pred eccchhhhhhc
Confidence 99999998743
No 224
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.43 E-value=1.1e-11 Score=108.69 Aligned_cols=151 Identities=17% Similarity=0.302 Sum_probs=114.0
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCe-----eEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 7 RSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEV-----KSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 7 ~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v-----~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
....+....+.++.+..++.+.|||...+.. +... .+.+.. .-+.++++.-++++|+.-+.|.+|+....+.
T Consensus 91 ~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~--~~~i-~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~ 167 (967)
T KOG0974|consen 91 FGAKLFEENKKIALVTSRNSLLIRDSKNSSV--LSKI-QSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK 167 (967)
T ss_pred cccchhhhcceEEEEEcCceEEEEecccCce--ehhc-CCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence 3344455667788889999999999866532 2222 233322 1223467778899999999999999863221
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
+. .+.+|...|..+.|+-++.+++++|+|.++++|.+++.+... ...-+|+++|+.+.|+|. .++++
T Consensus 168 --p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--------~~~fgHsaRvw~~~~~~n--~i~t~ 234 (967)
T KOG0974|consen 168 --PI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--------CTGFGHSARVWACCFLPN--RIITV 234 (967)
T ss_pred --cc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--------cccccccceeEEEEeccc--eeEEe
Confidence 12 478999999999999999999999999999999998764321 112379999999999999 89999
Q ss_pred eCCCcEEEEeCC
Q 023500 162 SDDLTIKIWGAD 173 (281)
Q Consensus 162 ~~d~~i~~w~~~ 173 (281)
+.|-++++|+.+
T Consensus 235 gedctcrvW~~~ 246 (967)
T KOG0974|consen 235 GEDCTCRVWGVN 246 (967)
T ss_pred ccceEEEEEecc
Confidence 999999999654
No 225
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=1.6e-10 Score=98.77 Aligned_cols=154 Identities=12% Similarity=0.146 Sum_probs=101.4
Q ss_pred CccceeEEEEcCCCCEEEEeeC---CCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEE-EecCCCc--EEEEE
Q 023500 2 HTRTVRSCAWSPSGKLLATASF---DATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLA-TCGRDKS--VWIWE 75 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~---d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~--v~~w~ 75 (281)
|...+...+|+|||+.|+..+. +..|.+||..++... .+..+.+.+...+|+|||+.|+ +.+.++. |.+||
T Consensus 200 ~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~---~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 276 (435)
T PRK05137 200 GSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE---LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMD 276 (435)
T ss_pred CCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE---EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEE
Confidence 4567889999999998887763 457999998776543 3344566778899999998765 5566665 66667
Q ss_pred ecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEec-CC--eEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEc
Q 023500 76 VMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY-DN--TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN 152 (281)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~-d~--~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 152 (281)
+..+. ...+..+........|+|++..++..+. ++ .|++++..... .+.+.. +...+....|+
T Consensus 277 ~~~~~----~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~------~~~lt~----~~~~~~~~~~S 342 (435)
T PRK05137 277 LRSGT----TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN------PRRISF----GGGRYSTPVWS 342 (435)
T ss_pred CCCCc----eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC------eEEeec----CCCcccCeEEC
Confidence 65443 2334455555678899999998876664 33 56666654321 122221 12335567899
Q ss_pred cCCCEEEEeeCC-C--cEEEEeC
Q 023500 153 AKGDKLVSCSDD-L--TIKIWGA 172 (281)
Q Consensus 153 ~~~~~l~s~~~d-~--~i~~w~~ 172 (281)
|+++.|+....+ + .|.+|+.
T Consensus 343 pdG~~ia~~~~~~~~~~i~~~d~ 365 (435)
T PRK05137 343 PRGDLIAFTKQGGGQFSIGVMKP 365 (435)
T ss_pred CCCCEEEEEEcCCCceEEEEEEC
Confidence 999988776543 2 3445554
No 226
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.42 E-value=2.6e-10 Score=89.77 Aligned_cols=160 Identities=17% Similarity=0.306 Sum_probs=106.4
Q ss_pred CCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEE--EecCCeEEEEeCCCC
Q 023500 47 ENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFS--CSYDNTIKVWWAEDT 124 (281)
Q Consensus 47 ~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s--~s~d~~v~~w~~~~~ 124 (281)
..+|.+|.++- ++|+.+-.+ .|.++|+...+....+.....+...+..+..++.+++++- .-.-|.|.+||....
T Consensus 87 pt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl 163 (391)
T KOG2110|consen 87 PTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL 163 (391)
T ss_pred CCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc
Confidence 45666777654 566666554 4999999866544444444455566777777777778763 334589999987654
Q ss_pred CCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcE-EEEeCCccccccCCCCcccceeEEeecccCcceEEE
Q 023500 125 DSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTI-KIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSV 203 (281)
Q Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 203 (281)
. .+..+ .+|.+.+.+++|+++|.+|||++..|+| |+|.+..++
T Consensus 164 ~-----~v~~I----~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~--------------------------- 207 (391)
T KOG2110|consen 164 Q-----PVNTI----NAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQ--------------------------- 207 (391)
T ss_pred e-----eeeEE----EecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCcc---------------------------
Confidence 2 22223 3799999999999999999999999964 555432110
Q ss_pred EeCCCceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 204 HWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 204 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
+++..+. . .--..|.+++|+|+++ +|++.|.-++|.||++..
T Consensus 208 -----------------kl~eFRR---------------G-~~~~~IySL~Fs~ds~-~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 208 -----------------KLYEFRR---------------G-TYPVSIYSLSFSPDSQ-FLAASSNTETVHIFKLEK 249 (391)
T ss_pred -----------------EeeeeeC---------------C-ceeeEEEEEEECCCCC-eEEEecCCCeEEEEEecc
Confidence 1111110 0 0023478899999876 677888889999998764
No 227
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=6.1e-12 Score=100.20 Aligned_cols=161 Identities=18% Similarity=0.228 Sum_probs=117.1
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeec--CCCCCeeEEEEcCCC---C--EEEEecCCCcEEEE
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLE--GHENEVKSVSWNASG---T--LLATCGRDKSVWIW 74 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~--~h~~~v~~v~~~~~~---~--~l~s~~~d~~v~~w 74 (281)
|.+.|.++.|+|||++|++-+.| ..++|+..++- +++... +-+.....+.|+.++ . .++.-..-+.|+.|
T Consensus 185 ~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~--~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~ 261 (398)
T KOG0771|consen 185 HHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA--ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLC 261 (398)
T ss_pred hcCccccceeCCCCcEEEEecCC-ceEEEEeccCc--hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEE
Confidence 67899999999999999999999 89999988773 233322 344566788888776 2 23344455677877
Q ss_pred EecCCCe--eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEc
Q 023500 75 EVMPGNE--FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN 152 (281)
Q Consensus 75 ~~~~~~~--~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 152 (281)
++..-.. .-..+........|.+++.++++++++.|+.||.|.+++..+. +.+.....+|..-|+.+.|+
T Consensus 262 ~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~l--------q~~~~vk~aH~~~VT~ltF~ 333 (398)
T KOG0771|consen 262 DISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSL--------QRLQYVKEAHLGFVTGLTFS 333 (398)
T ss_pred EeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEecee--------eeeEeehhhheeeeeeEEEc
Confidence 7642211 0011111122345899999999999999999999999966543 33344456899999999999
Q ss_pred cCCCEEEEeeCCCcEEEEeCC
Q 023500 153 AKGDKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 153 ~~~~~l~s~~~d~~i~~w~~~ 173 (281)
|+.+++++.+.|....+..+.
T Consensus 334 Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 334 PDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred CCcCcccccccCCceeEEEEe
Confidence 999999999988888887554
No 228
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.37 E-value=1.7e-08 Score=83.57 Aligned_cols=257 Identities=16% Similarity=0.211 Sum_probs=153.7
Q ss_pred eeEEEEcCCCCEEEEeeC----CCcEEEEecCC--CceeeeeeecCCCCCeeEEEEcCCCCEEEEec-CCCcEEEEEecC
Q 023500 6 VRSCAWSPSGKLLATASF----DATTCIWEDVG--GDYECVATLEGHENEVKSVSWNASGTLLATCG-RDKSVWIWEVMP 78 (281)
Q Consensus 6 i~~~~~~~~~~~l~tg~~----d~~i~lw~~~~--~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~d~~v~~w~~~~ 78 (281)
-..++++|++++|.+..+ ++.|..|.... +....+.........-..++++|++++|+++. .+++|.++++..
T Consensus 39 Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~ 118 (345)
T PF10282_consen 39 PSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDD 118 (345)
T ss_dssp ECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccC
Confidence 356789999998877766 46888887654 45555554442233445689999999988876 589999999976
Q ss_pred CCeeEEe-Eee----------cCCccceeEEEecCCCCeEEEEec-CCeEEEEeCCCCCCCCceeeeeeeeccCCccccE
Q 023500 79 GNEFECV-SVL----------QGHAQDVKMVQWHPTMDVLFSCSY-DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTI 146 (281)
Q Consensus 79 ~~~~~~~-~~~----------~~~~~~v~~v~~~p~~~~l~s~s~-d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v 146 (281)
....... ... ..-.....++.++|+++++++... ...|.+|+++..... ......+. .......
T Consensus 119 ~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~-l~~~~~~~---~~~G~GP 194 (345)
T PF10282_consen 119 DGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGK-LTPVDSIK---VPPGSGP 194 (345)
T ss_dssp TSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-T-EEEEEEEE---CSTTSSE
T ss_pred CcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCce-EEEeeccc---cccCCCC
Confidence 4332222 111 112345678999999998776544 358888888654311 11111121 1223457
Q ss_pred EEEEEccCCCEEEE-eeCCCcEEEEeCCccccccCCCCcccceeEEeec----cc-CcceEEEEeCCCc--eeeecCCCC
Q 023500 147 WALSFNAKGDKLVS-CSDDLTIKIWGADITRMQSGDGYASWRHLCTISG----YH-DRTIFSVHWSREG--IIASGAADD 218 (281)
Q Consensus 147 ~~~~~~~~~~~l~s-~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~v~~~~~~~~~--~~~~~~~d~ 218 (281)
..+.|+|++++++. +-.++.|.+++..... + .++....... .. ......+.++|++ ++++.-..+
T Consensus 195 Rh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~-----g--~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~ 267 (345)
T PF10282_consen 195 RHLAFSPDGKYAYVVNELSNTVSVFDYDPSD-----G--SLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSN 267 (345)
T ss_dssp EEEEE-TTSSEEEEEETTTTEEEEEEEETTT-----T--EEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTT
T ss_pred cEEEEcCCcCEEEEecCCCCcEEEEeecccC-----C--ceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCC
Confidence 78999999987655 4567889998765110 0 1111211111 11 1245667778876 455555677
Q ss_pred cEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 219 SVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
++.+|.+.... +.. ..+..........+.++++|+++.++++...++.|.+|++.
T Consensus 268 sI~vf~~d~~~---g~l--~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 268 SISVFDLDPAT---GTL--TLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEEEECTTT---TTE--EEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEEecCC---Cce--EEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 88888773211 111 11222222334578999999999888888889999999874
No 229
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=3.9e-10 Score=95.95 Aligned_cols=213 Identities=15% Similarity=0.170 Sum_probs=119.4
Q ss_pred cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC---CcEEEEEecCCCeeEEeEeecCCccceeEEEecC
Q 023500 26 TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD---KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP 102 (281)
Q Consensus 26 ~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p 102 (281)
.|.++|..+.. ...+..+.+.+.+.+|+|||+.|+..+.+ ..|.+||+..+.. ..+ ......+....|+|
T Consensus 177 ~L~~~D~dG~~---~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~-~~l---~~~~g~~~~~~~SP 249 (427)
T PRK02889 177 QLQISDADGQN---AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR-RVV---ANFKGSNSAPAWSP 249 (427)
T ss_pred EEEEECCCCCC---ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE-EEe---ecCCCCccceEECC
Confidence 56666654332 23344577889999999999998876643 3599999976543 222 22223456889999
Q ss_pred CCCeEE-EEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee-CCCcEEEEeCCccccccC
Q 023500 103 TMDVLF-SCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS-DDLTIKIWGADITRMQSG 180 (281)
Q Consensus 103 ~~~~l~-s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~~w~~~~~~~~~~ 180 (281)
+++.++ +.+.++...+|.++.... ....+. .+........|+||++.|+..+ .++...+|..+...-
T Consensus 250 DG~~la~~~~~~g~~~Iy~~d~~~~----~~~~lt----~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g--- 318 (427)
T PRK02889 250 DGRTLAVALSRDGNSQIYTVNADGS----GLRRLT----QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG--- 318 (427)
T ss_pred CCCEEEEEEccCCCceEEEEECCCC----CcEECC----CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC---
Confidence 998765 667888877776532211 111221 2333445678999999877555 456778886532110
Q ss_pred CCCcccceeEEeecccCcceEEEEeCCCce-eeecC-CCC--cEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEc
Q 023500 181 DGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGA-ADD--SVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWS 256 (281)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 256 (281)
..+.+. . .........|+|+|. ++..+ .++ .+.+|+..... ...+ . .........|+
T Consensus 319 ----~~~~lt-~---~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~------~~~l-t----~~~~~~~p~~s 379 (427)
T PRK02889 319 ----AAQRVT-F---TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQ------VTAL-T----DTTRDESPSFA 379 (427)
T ss_pred ----ceEEEe-c---CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCC------eEEc-c----CCCCccCceEC
Confidence 001111 1 111223456788774 33222 333 46666553321 1111 1 11123567899
Q ss_pred CCCCeeEEEeCCCCeEEEE
Q 023500 257 PGERRLLASASDDGMIKIW 275 (281)
Q Consensus 257 ~~~~~~~~s~~~Dg~v~iw 275 (281)
|+++.++.+....|.-.++
T Consensus 380 pdg~~l~~~~~~~g~~~l~ 398 (427)
T PRK02889 380 PNGRYILYATQQGGRSVLA 398 (427)
T ss_pred CCCCEEEEEEecCCCEEEE
Confidence 9998766666555543333
No 230
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.34 E-value=2.5e-11 Score=112.07 Aligned_cols=191 Identities=17% Similarity=0.253 Sum_probs=142.9
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeE
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE 83 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~ 83 (281)
..|.++.=+|...+.+||+.||.+++|...-++........|. ..|+.+.|+..|+.+..+..||.+-+|.+.+ .
T Consensus 2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p----k 2283 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQASP----K 2283 (2439)
T ss_pred CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCCceeeeccCCceeecccCC----c
Confidence 5677888899999999999999999998765554333333444 8899999999999999999999999998752 3
Q ss_pred EeEeecCCccceeEEEecCCCCeEEEE---ecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEE
Q 023500 84 CVSVLQGHAQDVKMVQWHPTMDVLFSC---SYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 84 ~~~~~~~~~~~v~~v~~~p~~~~l~s~---s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
+....+.|........|-. ..++++ +.++.+.+||.....+.. ++. ..|...++++++-|..+.|++
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s--~v~------~~H~~gaT~l~~~P~~qllis 2353 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNS--LVH------TCHDGGATVLAYAPKHQLLIS 2353 (2439)
T ss_pred ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccc--eee------eecCCCceEEEEcCcceEEEe
Confidence 4566778887777777765 445544 356799999876544322 121 468899999999999999999
Q ss_pred eeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCC
Q 023500 161 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDL 230 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 230 (281)
|+++|.+.+||++-++. + |.-+. ++...++++++..|.+++|....-.+
T Consensus 2354 ggr~G~v~l~D~rqrql---------~--------h~~~~----~~~~~~f~~~ss~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2354 GGRKGEVCLFDIRQRQL---------R--------HTFQA----LDTREYFVTGSSEGNIKIWRLSEFGL 2402 (2439)
T ss_pred cCCcCcEEEeehHHHHH---------H--------HHhhh----hhhhheeeccCcccceEEEEccccch
Confidence 99999999999864332 1 11111 23456888999999999998765433
No 231
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=6.2e-10 Score=92.41 Aligned_cols=243 Identities=14% Similarity=0.227 Sum_probs=145.6
Q ss_pred cceeEEEEcCCCCE-EEEeeCCCcEEEEecCCCceeeeeeec--------------------------CCC--C-----C
Q 023500 4 RTVRSCAWSPSGKL-LATASFDATTCIWEDVGGDYECVATLE--------------------------GHE--N-----E 49 (281)
Q Consensus 4 ~~i~~~~~~~~~~~-l~tg~~d~~i~lw~~~~~~~~~~~~~~--------------------------~h~--~-----~ 49 (281)
..-+.+..+|||+| +|||-+--.|++||......+.-..+. -|. + .
T Consensus 52 ~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~R 131 (703)
T KOG2321|consen 52 TASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTR 131 (703)
T ss_pred cccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeee
Confidence 34578899999997 578888999999997653221111110 000 0 0
Q ss_pred ----eeEEEEc-CCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCC
Q 023500 50 ----VKSVSWN-ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDT 124 (281)
Q Consensus 50 ----v~~v~~~-~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~ 124 (281)
-..++++ |...+++.|+ ...|.=.++..+.- +..+....+.++++..+|-..+|++|+.||.|-.||....
T Consensus 132 IP~~GRDm~y~~~scDly~~gs-g~evYRlNLEqGrf---L~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~k 207 (703)
T KOG2321|consen 132 IPKFGRDMKYHKPSCDLYLVGS-GSEVYRLNLEQGRF---LNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDK 207 (703)
T ss_pred cCcCCccccccCCCccEEEeec-CcceEEEEcccccc---ccccccccccceeeeecCccceEEecccCceEEEecchhh
Confidence 0122222 2223333333 23444455544432 3334445578999999999999999999999999987653
Q ss_pred CCCCceeeeeeeeccCCccc-----cEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcc
Q 023500 125 DSDNWHCVQTISESNNGHSS-----TIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRT 199 (281)
Q Consensus 125 ~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (281)
..-. ..........|+. .|+++.|+.+|-.++.|..+|.+.|||+....+.. ..-....-+
T Consensus 208 srv~---~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~-----------~kdh~~e~p 273 (703)
T KOG2321|consen 208 SRVG---TLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL-----------VKDHGYELP 273 (703)
T ss_pred hhhe---eeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee-----------ecccCCccc
Confidence 2110 1111111122333 49999999999999999999999999987654321 111123456
Q ss_pred eEEEEeCCC--ceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEE
Q 023500 200 IFSVHWSRE--GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIW 275 (281)
Q Consensus 200 v~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw 275 (281)
|..+.|.+. +-.+.......+++|+...+ ..+ .... -..+++.+.+-|++ .++.++.++..+..|
T Consensus 274 i~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~G-----k~~---asiE--pt~~lND~C~~p~s-Gm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 274 IKKLDWQDTDQQNKVVSMDKRILKIWDECTG-----KPM---ASIE--PTSDLNDFCFVPGS-GMFFTANESSKMHTY 340 (703)
T ss_pred eeeecccccCCCceEEecchHHhhhcccccC-----Cce---eecc--ccCCcCceeeecCC-ceEEEecCCCcceeE
Confidence 777777654 22333345567788955432 211 1112 23458899998965 478888887776554
No 232
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.33 E-value=6.4e-09 Score=80.57 Aligned_cols=178 Identities=14% Similarity=0.263 Sum_probs=113.9
Q ss_pred CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCC--ccceeEEEecC
Q 023500 25 ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGH--AQDVKMVQWHP 102 (281)
Q Consensus 25 ~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~--~~~v~~v~~~p 102 (281)
+++-|||.... .++.+++ ...+|.+|.++++ +|+..- .+.|.||...... +.+..+... ...+++++=+-
T Consensus 75 NkviIWDD~k~--~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~--k~l~~~et~~NPkGlC~~~~~~ 146 (346)
T KOG2111|consen 75 NKVIIWDDLKE--RCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNP--KLLHVIETRSNPKGLCSLCPTS 146 (346)
T ss_pred ceEEEEecccC--cEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCCh--hheeeeecccCCCceEeecCCC
Confidence 46899996544 3566665 6789999999875 444443 4789999986332 122222221 12233332222
Q ss_pred CCCeEEE-EecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCC-cEEEEeCCccccccC
Q 023500 103 TMDVLFS-CSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDL-TIKIWGADITRMQSG 180 (281)
Q Consensus 103 ~~~~l~s-~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~-~i~~w~~~~~~~~~~ 180 (281)
...+|+- |-.-|.|+|-++....... .....+|...+.|++++.+|..+||++..| .|||||...+.....
T Consensus 147 ~k~~LafPg~k~GqvQi~dL~~~~~~~-------p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E 219 (346)
T KOG2111|consen 147 NKSLLAFPGFKTGQVQIVDLASTKPNA-------PSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQE 219 (346)
T ss_pred CceEEEcCCCccceEEEEEhhhcCcCC-------ceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeee
Confidence 3334443 3345889998876543211 112348999999999999999999999999 578999875532110
Q ss_pred CCCcccceeEEeecccCcceEEEEeCCCce-eeecCCCCcEEEEeccc
Q 023500 181 DGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESK 227 (281)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~~~~~~~~~ 227 (281)
.--+.....+.+++|+|+.. ++..+..|++.+|....
T Consensus 220 ----------~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 220 ----------LRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred ----------eecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 11133567899999999875 55555667999997654
No 233
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.32 E-value=2.6e-09 Score=82.66 Aligned_cols=159 Identities=14% Similarity=0.201 Sum_probs=106.8
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeee--cCCCCCeeEEEEcCCCCEEEE-ecCCCcEEEEEecCCC
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATL--EGHENEVKSVSWNASGTLLAT-CGRDKSVWIWEVMPGN 80 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~--~~h~~~v~~v~~~~~~~~l~s-~~~d~~v~~w~~~~~~ 80 (281)
.+|.++.+.++ +++..- .+.|.+|...++. ..+..+ ......+.++.-..+...||- |-.-|.|++-|+....
T Consensus 95 ~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~-k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~ 170 (346)
T KOG2111|consen 95 SEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNP-KLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTK 170 (346)
T ss_pred cceeeEEEcCC--eEEEEe-cCeEEEEEcCCCh-hheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcC
Confidence 45666666544 444433 5779999765332 122222 223344444432223344443 3356899999986554
Q ss_pred eeEEeEeecCCccceeEEEecCCCCeEEEEecCCeE-EEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI-KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV 159 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v-~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 159 (281)
.. ....+.+|...|.|++.+-+|..+||+|..|++ |||+..+.. .+.++... ..++.+.+++|||+..+|+
T Consensus 171 ~~-~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~-----~l~E~RRG--~d~A~iy~iaFSp~~s~La 242 (346)
T KOG2111|consen 171 PN-APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGT-----LLQELRRG--VDRADIYCIAFSPNSSWLA 242 (346)
T ss_pred cC-CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCc-----EeeeeecC--CchheEEEEEeCCCccEEE
Confidence 31 235678999999999999999999999999976 899876653 33334322 2357799999999999999
Q ss_pred EeeCCCcEEEEeCCc
Q 023500 160 SCSDDLTIKIWGADI 174 (281)
Q Consensus 160 s~~~d~~i~~w~~~~ 174 (281)
..+..|++.+|.++.
T Consensus 243 vsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 243 VSSDKGTLHIFSLRD 257 (346)
T ss_pred EEcCCCeEEEEEeec
Confidence 999999999997653
No 234
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=9.8e-10 Score=93.81 Aligned_cols=214 Identities=14% Similarity=0.163 Sum_probs=121.0
Q ss_pred cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC---CcEEEEEecCCCeeEEeEeecCCccceeEEEecC
Q 023500 26 TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD---KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP 102 (281)
Q Consensus 26 ~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p 102 (281)
.|.+||..+.. ...+..+...+.+.+|+|||+.|+..+.+ ..|.+|++..+.. .. +.........+.|+|
T Consensus 185 ~l~i~D~~g~~---~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~-~~---l~~~~g~~~~~~~Sp 257 (433)
T PRK04922 185 ALQVADSDGYN---PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR-EL---VASFRGINGAPSFSP 257 (433)
T ss_pred EEEEECCCCCC---ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE-EE---eccCCCCccCceECC
Confidence 58888875443 23445577789999999999998877643 4699999865542 22 222333345789999
Q ss_pred CCCeE-EEEecCC--eEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee-CCCcEEEEeCCccccc
Q 023500 103 TMDVL-FSCSYDN--TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS-DDLTIKIWGADITRMQ 178 (281)
Q Consensus 103 ~~~~l-~s~s~d~--~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~~w~~~~~~~~ 178 (281)
+++.+ ++.+.++ .|++|++.... ...+. .+.......+|+|+++.|+..+ .+|...+|..+....
T Consensus 258 DG~~l~~~~s~~g~~~Iy~~d~~~g~------~~~lt----~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g- 326 (433)
T PRK04922 258 DGRRLALTLSRDGNPEIYVMDLGSRQ------LTRLT----NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG- 326 (433)
T ss_pred CCCEEEEEEeCCCCceEEEEECCCCC------eEECc----cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC-
Confidence 99866 4556666 58888776532 11221 2333445689999999877665 456655554332110
Q ss_pred cCCCCcccceeEEeecccCcceEEEEeCCCce-ee-ecCCCC--cEEEEecccCCCcCCccceeeeeeccCCCCCeeEEE
Q 023500 179 SGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IA-SGAADD--SVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQ 254 (281)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~-~~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 254 (281)
..+.+. ..........|+|+|. ++ +...++ .+.+|+..... . . .+. +........
T Consensus 327 ------~~~~lt----~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~-----~-~-~Lt----~~~~~~~p~ 385 (433)
T PRK04922 327 ------SAERLT----FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS-----V-R-TLT----PGSLDESPS 385 (433)
T ss_pred ------CeEEee----cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCC-----e-E-ECC----CCCCCCCce
Confidence 001111 1122233567888774 22 222333 46666543221 1 1 111 112234568
Q ss_pred EcCCCCeeEEEeCCCC--eEEEEEcc
Q 023500 255 WSPGERRLLASASDDG--MIKIWELA 278 (281)
Q Consensus 255 ~~~~~~~~~~s~~~Dg--~v~iw~~~ 278 (281)
|+|+++.++.+....+ .|.++++.
T Consensus 386 ~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 386 FAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred ECCCCCEEEEEEecCCceEEEEEECC
Confidence 9999986655554433 46666653
No 235
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.30 E-value=4e-08 Score=77.67 Aligned_cols=261 Identities=13% Similarity=0.136 Sum_probs=157.5
Q ss_pred cceeEEEEcCCCCEEEEeeCC---CcEEEEecC--CCceeeeeeecCCCCCeeEEEEcCCCCEEEEecC-CCcEEEEEec
Q 023500 4 RTVRSCAWSPSGKLLATASFD---ATTCIWEDV--GGDYECVATLEGHENEVKSVSWNASGTLLATCGR-DKSVWIWEVM 77 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d---~~i~lw~~~--~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d~~v~~w~~~ 77 (281)
...+-++|+|++++|-++..+ |.|.-|... .+....+........+-.-++++++|++++++.. -+.|.++.++
T Consensus 40 ~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~ 119 (346)
T COG2706 40 GNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQ 119 (346)
T ss_pred CCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcc
Confidence 457789999999988877655 567766544 3554443332222223367899999999988865 5789999887
Q ss_pred CCCeeEEeEeecCCccc----------eeEEEecCCCCeEEEEecC-CeEEEEeCCCCCCCCceeeeeeeeccCCccccE
Q 023500 78 PGNEFECVSVLQGHAQD----------VKMVQWHPTMDVLFSCSYD-NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTI 146 (281)
Q Consensus 78 ~~~~~~~~~~~~~~~~~----------v~~v~~~p~~~~l~s~s~d-~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v 146 (281)
.............|... +.++.+.|++++++++.-. ..|.+|++++........ ..+ ......
T Consensus 120 ~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~-~~v-----~~G~GP 193 (346)
T COG2706 120 ADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADP-AEV-----KPGAGP 193 (346)
T ss_pred cCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccc-ccc-----CCCCCc
Confidence 64432222122223333 7889999999998887654 478899888553322111 111 112445
Q ss_pred EEEEEccCCCEEEEee-CCCcEEEEeCCccccccCCCCcccceeEEeec-c-cCcceEEEEeCCCceeeecCC--CCcEE
Q 023500 147 WALSFNAKGDKLVSCS-DDLTIKIWGADITRMQSGDGYASWRHLCTISG-Y-HDRTIFSVHWSREGIIASGAA--DDSVQ 221 (281)
Q Consensus 147 ~~~~~~~~~~~l~s~~-~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~~~~~--d~~~~ 221 (281)
..+.|+|++++..... -+++|.+|..+.... .+..+..+..+.. + .....-.|..+++|.++=.+. ..++.
T Consensus 194 RHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g----~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~ 269 (346)
T COG2706 194 RHIVFHPNGKYAYLVNELNSTVDVLEYNPAVG----KFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIA 269 (346)
T ss_pred ceEEEcCCCcEEEEEeccCCEEEEEEEcCCCc----eEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEE
Confidence 6799999999766654 588999997653210 0011111111111 1 123445567778775443332 34677
Q ss_pred EEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 222 FFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
+|.+.... +. ..+......+....+...|+|.++.|+++.-....|.+|.+..
T Consensus 270 ~f~V~~~~---g~--L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 270 VFSVDPDG---GK--LELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred EEEEcCCC---CE--EEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 77654321 11 2233344455556789999999887776666667799988654
No 236
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.29 E-value=1.7e-11 Score=98.98 Aligned_cols=192 Identities=18% Similarity=0.237 Sum_probs=136.7
Q ss_pred eEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCce
Q 023500 51 KSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWH 130 (281)
Q Consensus 51 ~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~ 130 (281)
+.+.++.+|++|+.||.-|.|-.+|..+..-. ..+. -...|..+.|--+.+++|. ....-++|||-...+ -+
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~---~Ei~-v~Etv~Dv~~LHneq~~AV-AQK~y~yvYD~~GtE---lH 204 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLH---FEIN-VMETVRDVTFLHNEQFFAV-AQKKYVYVYDNNGTE---LH 204 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceee---eeee-hhhhhhhhhhhcchHHHHh-hhhceEEEecCCCcE---Ee
Confidence 46788889999999999999999998765421 1111 2345778888776665554 567788998654332 23
Q ss_pred eeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC-Cc
Q 023500 131 CVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR-EG 209 (281)
Q Consensus 131 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 209 (281)
|+.+ ...|..+.|-|-.-+|++++..|.++.-|+..++....- . .....+..++..| +.
T Consensus 205 Clk~--------~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~--------~----t~~G~~~vm~qNP~Na 264 (545)
T KOG1272|consen 205 CLKR--------HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASI--------R----TGAGRTDVMKQNPYNA 264 (545)
T ss_pred ehhh--------cCchhhhcccchhheeeecccCCceEEEeechhhhhHHH--------H----ccCCccchhhcCCccc
Confidence 3322 255888999999889999999999999888766532110 0 0123445555565 55
Q ss_pred eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 210 IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 210 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
.+-.|..+|++.+|.++... + +.....|.++|.++++.++|. +++|.|.|..++|||+++.
T Consensus 265 Vih~GhsnGtVSlWSP~ske----P-----LvKiLcH~g~V~siAv~~~G~-YMaTtG~Dr~~kIWDlR~~ 325 (545)
T KOG1272|consen 265 VIHLGHSNGTVSLWSPNSKE----P-----LVKILCHRGPVSSIAVDRGGR-YMATTGLDRKVKIWDLRNF 325 (545)
T ss_pred eEEEcCCCceEEecCCCCcc----h-----HHHHHhcCCCcceEEECCCCc-EEeecccccceeEeeeccc
Confidence 77889999999999765421 1 222347999999999999875 6889999999999999864
No 237
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.28 E-value=3.8e-10 Score=86.37 Aligned_cols=156 Identities=19% Similarity=0.227 Sum_probs=114.7
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcC-CCCEEEEecCCCcEEEEEecCCCeeEEe
Q 023500 7 RSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECV 85 (281)
Q Consensus 7 ~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~~~~~~~ 85 (281)
.++.|++.+.-++++..+|.+.+-+......+.++.+++|+-+.+...|+. +.+.+.+||+|+.+..||++..+++ .-
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~-i~ 203 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF-IW 203 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcce-ee
Confidence 467899999888888888988844333334445668899999999999976 5678999999999999999854432 11
Q ss_pred EeecCCccceeEEEecCC-CCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC--CCEEEEee
Q 023500 86 SVLQGHAQDVKMVQWHPT-MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK--GDKLVSCS 162 (281)
Q Consensus 86 ~~~~~~~~~v~~v~~~p~-~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~ 162 (281)
..-+-|...|.++.-+|. ..++++|+.|..|++||..... +.+.... -.+.|+-+.++|. +..|++|.
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~-------kPl~~~~--v~GGVWRi~~~p~~~~~lL~~CM 274 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG-------KPLFKAK--VGGGVWRIKHHPEIFHRLLAACM 274 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc-------CccccCc--cccceEEEEecchhhhHHHHHHH
Confidence 224568888999988875 5689999999999999876432 1122111 2377999999985 34678888
Q ss_pred CCCcEEEEeCC
Q 023500 163 DDLTIKIWGAD 173 (281)
Q Consensus 163 ~d~~i~~w~~~ 173 (281)
..| .++-+..
T Consensus 275 h~G-~ki~~~~ 284 (339)
T KOG0280|consen 275 HNG-AKILDSS 284 (339)
T ss_pred hcC-ceEEEec
Confidence 877 6666543
No 238
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.28 E-value=4.5e-11 Score=92.78 Aligned_cols=223 Identities=17% Similarity=0.341 Sum_probs=133.1
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEE-EEecCCCcEEEEEecCCCeeEEeE
Q 023500 8 SCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLL-ATCGRDKSVWIWEVMPGNEFECVS 86 (281)
Q Consensus 8 ~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~~~d~~v~~w~~~~~~~~~~~~ 86 (281)
-+.|+|+|+++|+++.- -+.|=|.++-+. .+-+. --..|.-+.|..+..++ .....|+.|.+|++...+ + ..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~--~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe-w--~c 85 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQL--HQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE-W--YC 85 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhH--HHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecce-e--EE
Confidence 46799999999998755 455555444321 11111 12345567888877665 456788899999996543 2 23
Q ss_pred eecCCccceeEEEecCCCCe-EEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCC
Q 023500 87 VLQGHAQDVKMVQWHPTMDV-LFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDL 165 (281)
Q Consensus 87 ~~~~~~~~v~~v~~~p~~~~-l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~ 165 (281)
.+....+.+.+++|+|++.. +.+...|-.|-+|.+.+.. ...+... ...+..++|+|++++.+.+++-.
T Consensus 86 kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~------~~~~~~p----K~~~kg~~f~~dg~f~ai~sRrD 155 (447)
T KOG4497|consen 86 KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK------GYLLPHP----KTNVKGYAFHPDGQFCAILSRRD 155 (447)
T ss_pred EeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce------eEEeccc----ccCceeEEECCCCceeeeeeccc
Confidence 34556778999999999965 5677778899999665431 1112111 23457899999999988877532
Q ss_pred cEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeeeeccC
Q 023500 166 TIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKA 245 (281)
Q Consensus 166 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (281)
....+.+-. .+.|.....+ ...+.....+.|+|+|..++ +|+.- . .++.... .
T Consensus 156 Ckdyv~i~~--------c~~W~ll~~f-~~dT~DltgieWsPdg~~la--------Vwd~~----L---eykv~aY---e 208 (447)
T KOG4497|consen 156 CKDYVQISS--------CKAWILLKEF-KLDTIDLTGIEWSPDGNWLA--------VWDNV----L---EYKVYAY---E 208 (447)
T ss_pred HHHHHHHHh--------hHHHHHHHhc-CCCcccccCceECCCCcEEE--------Eecch----h---hheeeee---e
Confidence 211111100 0111111111 11234456788999876553 44211 0 1111111 1
Q ss_pred CCCCeeEEEEcCCCCeeEEEeCCCCeEEEE
Q 023500 246 HDMDVNSVQWSPGERRLLASASDDGMIKIW 275 (281)
Q Consensus 246 h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw 275 (281)
-.-.+..++|+|-++ +++.|+.|+.+||-
T Consensus 209 ~~lG~k~v~wsP~~q-flavGsyD~~lrvl 237 (447)
T KOG4497|consen 209 RGLGLKFVEWSPCNQ-FLAVGSYDQMLRVL 237 (447)
T ss_pred eccceeEEEeccccc-eEEeeccchhhhhh
Confidence 123478899999764 78999999999874
No 239
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.24 E-value=6.9e-09 Score=88.38 Aligned_cols=154 Identities=19% Similarity=0.237 Sum_probs=100.6
Q ss_pred cceeEEEEcCCCCEEEEeeCC---CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEE-EecCCC--cEEEEEec
Q 023500 4 RTVRSCAWSPSGKLLATASFD---ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLA-TCGRDK--SVWIWEVM 77 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d---~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~--~v~~w~~~ 77 (281)
..+...+|+|||++||.+..+ ..|.+|+..++....+ ..+.+.+.+++|+|+|+.|+ +.+.++ .|.+|++.
T Consensus 190 ~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~---~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~ 266 (417)
T TIGR02800 190 EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV---ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLD 266 (417)
T ss_pred CceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe---ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECC
Confidence 457788999999999877644 4789999877654333 33556667789999998765 455444 57788876
Q ss_pred CCCeeEEeEeecCCccceeEEEecCCCCeEEEEecC-C--eEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC
Q 023500 78 PGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD-N--TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK 154 (281)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d-~--~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 154 (281)
.+.. ..+..+........|+|+++.++.++.. + .|.+++..... ...+. .+...+....|+|+
T Consensus 267 ~~~~----~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~------~~~l~----~~~~~~~~~~~spd 332 (417)
T TIGR02800 267 GKQL----TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE------VRRLT----FRGGYNASPSWSPD 332 (417)
T ss_pred CCCE----EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC------EEEee----cCCCCccCeEECCC
Confidence 5432 2233444445577899999987766543 3 46666554321 11221 12234567889999
Q ss_pred CCEEEEeeCCC---cEEEEeCCc
Q 023500 155 GDKLVSCSDDL---TIKIWGADI 174 (281)
Q Consensus 155 ~~~l~s~~~d~---~i~~w~~~~ 174 (281)
+++++....++ .|.+||...
T Consensus 333 g~~i~~~~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 333 GDLIAFVHREGGGFNIAVMDLDG 355 (417)
T ss_pred CCEEEEEEccCCceEEEEEeCCC
Confidence 99888877765 666776653
No 240
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.24 E-value=2.1e-07 Score=77.11 Aligned_cols=248 Identities=14% Similarity=0.167 Sum_probs=147.3
Q ss_pred EEeeCC----CcEEEEec--CCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecC----CCcEEEEEecCC-CeeEEeEe
Q 023500 19 ATASFD----ATTCIWED--VGGDYECVATLEGHENEVKSVSWNASGTLLATCGR----DKSVWIWEVMPG-NEFECVSV 87 (281)
Q Consensus 19 ~tg~~d----~~i~lw~~--~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~----d~~v~~w~~~~~-~~~~~~~~ 87 (281)
..|+.+ +.|..|+. .+++...+.... -...-..++++|++++|.+... ++.|..|.+... .....+..
T Consensus 3 ~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 3 YVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 456655 68888876 455555444433 2344467889999999888765 579999998765 44444444
Q ss_pred ecCCccceeEEEecCCCCeEEEEec-CCeEEEEeCCCCCCCCceeeeeeee------ccCCccccEEEEEEccCCCEEEE
Q 023500 88 LQGHAQDVKMVQWHPTMDVLFSCSY-DNTIKVWWAEDTDSDNWHCVQTISE------SNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 88 ~~~~~~~v~~v~~~p~~~~l~s~s~-d~~v~~w~~~~~~~~~~~~~~~~~~------~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
.......-+.++++|++.+++++.. +++|.++++...... ......... ........+.++.|+|+++++++
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l-~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSL-GEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEE-EEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCccc-ceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 4323344567899999999888875 789999988764211 111111100 00112345678999999998777
Q ss_pred eeC-CCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc--eeeecCCCCcEEEEecccCCCcCCccc-
Q 023500 161 CSD-DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSVQFFVESKDDLIDGPSY- 236 (281)
Q Consensus 161 ~~~-d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~- 236 (281)
... ...|.+|+.+..... +.....+........+.+.|++++ .+++...++.+.++...... +...
T Consensus 161 ~dlG~D~v~~~~~~~~~~~-------l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~---g~~~~ 230 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGK-------LTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSD---GSLTE 230 (345)
T ss_dssp EETTTTEEEEEEE-TTS-T-------EEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT---TEEEE
T ss_pred EecCCCEEEEEEEeCCCce-------EEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccC---CceeE
Confidence 643 347888876532200 111112222234556788888876 45666677888888665211 1100
Q ss_pred eeeee---eccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 237 KMLLK---KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 237 ~~~~~---~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
..... ...........++++|++++++++....+.|.+|++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 231 IQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp EEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred EEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 00011 1111122577899999999999988889999999983
No 241
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=2.6e-08 Score=84.87 Aligned_cols=212 Identities=12% Similarity=0.127 Sum_probs=117.9
Q ss_pred cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEec---CCCcEEEEEecCCCeeEEeEeecCCccceeEEEecC
Q 023500 26 TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCG---RDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP 102 (281)
Q Consensus 26 ~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~---~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p 102 (281)
.|.+||..+.... .+..+.+.+...+|+|||+.|+..+ .+..+.+|++..++. ..+..+.++ +..+.|+|
T Consensus 180 ~l~~~d~dg~~~~---~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~-~~l~~~~~~---~~~~~~SP 252 (429)
T PRK03629 180 ELRVSDYDGYNQF---VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRH---NGAPAFSP 252 (429)
T ss_pred eEEEEcCCCCCCE---EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe-EEccCCCCC---cCCeEECC
Confidence 5888876554322 3334667889999999999887643 345788999865542 223333333 45689999
Q ss_pred CCCeEEEE-ecCC--eEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeC-CCcEEEEeCCccccc
Q 023500 103 TMDVLFSC-SYDN--TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD-DLTIKIWGADITRMQ 178 (281)
Q Consensus 103 ~~~~l~s~-s~d~--~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~~i~~w~~~~~~~~ 178 (281)
++..|+.. +.++ .|++|+++... ...+. .+...+....|+|+++.|+..+. ++..++|..+...-
T Consensus 253 DG~~La~~~~~~g~~~I~~~d~~tg~------~~~lt----~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g- 321 (429)
T PRK03629 253 DGSKLAFALSKTGSLNLYVMDLASGQ------IRQVT----DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG- 321 (429)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCC------EEEcc----CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC-
Confidence 99977644 4455 57788775432 11221 12234667899999998776654 45667774332110
Q ss_pred cCCCCcccceeEEeecccCcceEEEEeCCCce-e-eecCCCC--cEEEEecccCCCcCCccceeeeeeccCCCCCeeEEE
Q 023500 179 SGDGYASWRHLCTISGYHDRTIFSVHWSREGI-I-ASGAADD--SVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQ 254 (281)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~-~~~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 254 (281)
..+.+ . ..........|+|+|. + ++...++ .+.+++..... ... +.. .+ ......
T Consensus 322 ------~~~~l---t-~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~------~~~-Lt~--~~--~~~~p~ 380 (429)
T PRK03629 322 ------APQRI---T-WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG------VQV-LTD--TF--LDETPS 380 (429)
T ss_pred ------CeEEe---e-cCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC------eEE-eCC--CC--CCCCce
Confidence 00111 1 1122234567788763 3 3333333 34555443221 111 111 11 223578
Q ss_pred EcCCCCeeEEEeCCCCe---EEEEEc
Q 023500 255 WSPGERRLLASASDDGM---IKIWEL 277 (281)
Q Consensus 255 ~~~~~~~~~~s~~~Dg~---v~iw~~ 277 (281)
|+|+|+.++ .++.|+. +.++++
T Consensus 381 ~SpDG~~i~-~~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 381 IAPNGTMVI-YSSSQGMGSVLNLVST 405 (429)
T ss_pred ECCCCCEEE-EEEcCCCceEEEEEEC
Confidence 999987654 4444543 666665
No 242
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=2.2e-08 Score=85.58 Aligned_cols=155 Identities=19% Similarity=0.230 Sum_probs=96.0
Q ss_pred ccceeEEEEcCCCCEEEEeeCC---CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEE-EecCCC--cEEEEEe
Q 023500 3 TRTVRSCAWSPSGKLLATASFD---ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLA-TCGRDK--SVWIWEV 76 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d---~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~--~v~~w~~ 76 (281)
...+...+|+|||+.|+..+.+ ..|.+|+..+++...+.. ..+.+....|+|+|++|+ +.+.++ .|.++|+
T Consensus 198 ~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~---~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~ 274 (430)
T PRK00178 198 REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN---FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDL 274 (430)
T ss_pred CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC---CCCCcCCeEECCCCCEEEEEEccCCCceEEEEEC
Confidence 3567788999999988776644 358888887765443333 334455789999999876 455555 5777787
Q ss_pred cCCCeeEEeEeecCCccceeEEEecCCCCeEEEEec-CC--eEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEcc
Q 023500 77 MPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY-DN--TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA 153 (281)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~-d~--~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 153 (281)
..+.. ..+..+........|+|+++.++..+. ++ .|.++++.... ...+.. .+ .......|+|
T Consensus 275 ~~~~~----~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~------~~~lt~--~~--~~~~~~~~Sp 340 (430)
T PRK00178 275 ASRQL----SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR------AERVTF--VG--NYNARPRLSA 340 (430)
T ss_pred CCCCe----EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC------EEEeec--CC--CCccceEECC
Confidence 65432 223444445667899999997765554 33 45666554332 111211 11 1223468999
Q ss_pred CCCEEEEeeC-CC--cEEEEeCCc
Q 023500 154 KGDKLVSCSD-DL--TIKIWGADI 174 (281)
Q Consensus 154 ~~~~l~s~~~-d~--~i~~w~~~~ 174 (281)
+++.++.... ++ .|.++|.+.
T Consensus 341 dg~~i~~~~~~~~~~~l~~~dl~t 364 (430)
T PRK00178 341 DGKTLVMVHRQDGNFHVAAQDLQR 364 (430)
T ss_pred CCCEEEEEEccCCceEEEEEECCC
Confidence 9998877654 33 355666653
No 243
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=1.9e-08 Score=86.00 Aligned_cols=131 Identities=13% Similarity=0.149 Sum_probs=86.1
Q ss_pred cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecC---CCcEEEEEecCCCeeEEeEeecCCccceeEEEecC
Q 023500 26 TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR---DKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP 102 (281)
Q Consensus 26 ~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~---d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p 102 (281)
.|.++|..+.. ...+..|.+.+.+.+|+|||+.|+..+. +..|.+||+..+.. ..+..+...+....|+|
T Consensus 183 ~l~~~d~dg~~---~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~----~~l~~~~g~~~~~~~SP 255 (435)
T PRK05137 183 RLAIMDQDGAN---VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR----ELVGNFPGMTFAPRFSP 255 (435)
T ss_pred EEEEECCCCCC---cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE----EEeecCCCcccCcEECC
Confidence 67788765543 3345567889999999999999887653 46899999965542 22334445667889999
Q ss_pred CCCeE-EEEecCCe--EEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee-CCC--cEEEEeCC
Q 023500 103 TMDVL-FSCSYDNT--IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS-DDL--TIKIWGAD 173 (281)
Q Consensus 103 ~~~~l-~s~s~d~~--v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~--~i~~w~~~ 173 (281)
++..+ ++.+.++. |.+|+++... ...+. .+........|+|+++.|+..+ .+| .|.++|..
T Consensus 256 DG~~la~~~~~~g~~~Iy~~d~~~~~------~~~Lt----~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~ 322 (435)
T PRK05137 256 DGRKVVMSLSQGGNTDIYTMDLRSGT------TTRLT----DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNAD 322 (435)
T ss_pred CCCEEEEEEecCCCceEEEEECCCCc------eEEcc----CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECC
Confidence 99876 46666665 5566655432 12221 2334456789999999877665 344 35555543
No 244
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=1.4e-08 Score=86.85 Aligned_cols=150 Identities=19% Similarity=0.248 Sum_probs=90.7
Q ss_pred cceeEEEEcCCCCEEEEeeCC-C--cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEE-EecCCCc--EEEEEec
Q 023500 4 RTVRSCAWSPSGKLLATASFD-A--TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLA-TCGRDKS--VWIWEVM 77 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d-~--~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~--v~~w~~~ 77 (281)
..+....|+|||+.|+..+.+ + .|.+||..+++...+..+. +.....+|+|||+.|+ +.+.++. |.++|+.
T Consensus 218 ~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~---g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~ 294 (448)
T PRK04792 218 EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP---GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA 294 (448)
T ss_pred CcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC---CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC
Confidence 346678999999988866543 3 5778887766544444333 3344689999999776 4566665 6666765
Q ss_pred CCCeeEEeEeecCCccceeEEEecCCCCeEEEEec-CCe--EEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC
Q 023500 78 PGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY-DNT--IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK 154 (281)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~-d~~--v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 154 (281)
.+. ...+..+........|+|+++.++..+. ++. |.+++++... ...+.. .++ ......|+|+
T Consensus 295 tg~----~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~------~~~Lt~--~g~--~~~~~~~SpD 360 (448)
T PRK04792 295 TKA----LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK------VSRLTF--EGE--QNLGGSITPD 360 (448)
T ss_pred CCC----eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC------EEEEec--CCC--CCcCeeECCC
Confidence 443 2233444455677899999997765553 444 4444444321 111211 111 1234689999
Q ss_pred CCEEEEeeC-CCcEEEE
Q 023500 155 GDKLVSCSD-DLTIKIW 170 (281)
Q Consensus 155 ~~~l~s~~~-d~~i~~w 170 (281)
++.|+..+. ++..++|
T Consensus 361 G~~l~~~~~~~g~~~I~ 377 (448)
T PRK04792 361 GRSMIMVNRTNGKFNIA 377 (448)
T ss_pred CCEEEEEEecCCceEEE
Confidence 998766554 4555555
No 245
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.18 E-value=1.9e-07 Score=77.65 Aligned_cols=157 Identities=17% Similarity=0.172 Sum_probs=95.6
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEec-CCCcEEEEEecCCCeeEEeE
Q 023500 8 SCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCG-RDKSVWIWEVMPGNEFECVS 86 (281)
Q Consensus 8 ~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~d~~v~~w~~~~~~~~~~~~ 86 (281)
.+.|+|||+++..++.|+.|.++|..+.+ .++++.. ...-.++++++||++++++. .++++.++|....+....+.
T Consensus 41 ~~~~s~Dgr~~yv~~rdg~vsviD~~~~~--~v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~ 117 (369)
T PF02239_consen 41 GLKFSPDGRYLYVANRDGTVSVIDLATGK--VVATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP 117 (369)
T ss_dssp EEE-TT-SSEEEEEETTSEEEEEETTSSS--EEEEEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE
T ss_pred EEEecCCCCEEEEEcCCCeEEEEECCccc--EEEEEec-CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecc
Confidence 46799999999888999999999998775 3555553 34457899999999988665 68999999986554322221
Q ss_pred ee----cCCccceeEEEecCCCCeEEEEecC-CeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 87 VL----QGHAQDVKMVQWHPTMDVLFSCSYD-NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 87 ~~----~~~~~~v~~v~~~p~~~~l~s~s~d-~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
+. ....+.+..+..+|....++..-.| +.|.+-|...... .....+. .........|+|++++++.+
T Consensus 118 ~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~---~~~~~i~-----~g~~~~D~~~dpdgry~~va 189 (369)
T PF02239_consen 118 TGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN---LKVTTIK-----VGRFPHDGGFDPDGRYFLVA 189 (369)
T ss_dssp --EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC---EEEEEEE-------TTEEEEEE-TTSSEEEEE
T ss_pred cccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc---cceeeec-----ccccccccccCcccceeeec
Confidence 11 0133466777778887755554444 7776666554321 1111221 12345678999999987664
Q ss_pred -eCCCcEEEEeCCcc
Q 023500 162 -SDDLTIKIWGADIT 175 (281)
Q Consensus 162 -~~d~~i~~w~~~~~ 175 (281)
-.+..+-++|.+..
T Consensus 190 ~~~sn~i~viD~~~~ 204 (369)
T PF02239_consen 190 ANGSNKIAVIDTKTG 204 (369)
T ss_dssp EGGGTEEEEEETTTT
T ss_pred ccccceeEEEeeccc
Confidence 45668888887644
No 246
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.17 E-value=5.1e-09 Score=81.96 Aligned_cols=246 Identities=17% Similarity=0.252 Sum_probs=158.4
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecC-CCcee-eeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDV-GGDYE-CVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~-~~~~~-~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~ 79 (281)
|.+.|++...-|--+-+.+.+.|.+++||-.. .+++. .++. .-..+++++.+++..++|+.|-..|++.-+.+...
T Consensus 23 ~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~--~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sed 100 (404)
T KOG1409|consen 23 SQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYH--YMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSED 100 (404)
T ss_pred chhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhh--hCCCCceEeeeeccceEEEEEEecceEEEEEhhhh
Confidence 34556666666666677899999999999532 22221 1222 23467888999999999999999999998876532
Q ss_pred -CeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEE
Q 023500 80 -NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158 (281)
Q Consensus 80 -~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 158 (281)
+.....+....|...+..+-|+-....+++.+.|..+. |...+.+.. +..... .....++.+.-. +.
T Consensus 101 fnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e~~~~----lg~Y~~-----~~~~t~~~~d~~--~~ 168 (404)
T KOG1409|consen 101 FNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTESGNR----LGGYNF-----ETPASALQFDAL--YA 168 (404)
T ss_pred hhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceE-EEeeccCCc----ccceEe-----eccCCCCceeeE--EE
Confidence 22233456778999999999998888999999887764 432221110 000000 011112222111 55
Q ss_pred EEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC-CceeeecCCCCcEEEEecccCCCcCCccce
Q 023500 159 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLIDGPSYK 237 (281)
Q Consensus 159 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 237 (281)
..|...|.+..-...... ...+..+. .|...+.+++|++ ++.+++|..|.++.+|++... +
T Consensus 169 fvGd~~gqvt~lr~~~~~---------~~~i~~~~-~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~--------~ 230 (404)
T KOG1409|consen 169 FVGDHSGQITMLKLEQNG---------CQLITTFN-GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR--------K 230 (404)
T ss_pred EecccccceEEEEEeecC---------CceEEEEc-CcccceEEEEEcCCCcEEEeccccCceEEEeccCC--------c
Confidence 556666666554332111 12233333 4788999999997 568999999999999977432 1
Q ss_pred eeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 238 MLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 238 ~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
-...+..+|...|..+..-+--+ .+.+++.||.|.+|++...
T Consensus 231 g~~~el~gh~~kV~~l~~~~~t~-~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 231 GTAYELQGHNDKVQALSYAQHTR-QLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred ceeeeeccchhhhhhhhhhhhhe-eeeeccCCCeEEEEeccce
Confidence 12334567888888877665444 4679999999999998764
No 247
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.17 E-value=2.6e-08 Score=76.56 Aligned_cols=235 Identities=16% Similarity=0.219 Sum_probs=146.6
Q ss_pred CCC-EEEEeeCCCcEEEEecCCCceeeeeeecC---CC---CCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeE
Q 023500 14 SGK-LLATASFDATTCIWEDVGGDYECVATLEG---HE---NEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVS 86 (281)
Q Consensus 14 ~~~-~l~tg~~d~~i~lw~~~~~~~~~~~~~~~---h~---~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~ 86 (281)
+|. .++-+-.+|.|.+|...... ....+++ -. ....++.|++.+..++++-.+|.+-+-+..... .+...
T Consensus 83 ~g~~~l~~a~a~G~i~~~r~~~~~--ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~-le~vq 159 (339)
T KOG0280|consen 83 DGDFNLLDAHARGQIQLYRNDEDE--SSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMV-LEKVQ 159 (339)
T ss_pred CccceeeeccccceEEEEeeccce--eeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceee-eeecc
Confidence 444 45556677889998643321 1122222 11 123477899999999999999998855443222 23345
Q ss_pred eecCCccceeEEEecCCC-CeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEcc-CCCEEEEeeCC
Q 023500 87 VLQGHAQDVKMVQWHPTM-DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA-KGDKLVSCSDD 164 (281)
Q Consensus 87 ~~~~~~~~v~~v~~~p~~-~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d 164 (281)
.++.|.-++..++|+... +++++|+.|+.+..||+..+.. ++ ..-...|...|.++.-+| .+.++++|+-|
T Consensus 160 ~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~----~i---~~n~kvH~~GV~SI~ss~~~~~~I~TGsYD 232 (339)
T KOG0280|consen 160 TWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT----FI---WHNSKVHTSGVVSIYSSPPKPTYIATGSYD 232 (339)
T ss_pred cccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc----ee---eecceeeecceEEEecCCCCCceEEEeccc
Confidence 788899889888887643 5899999999999999874321 11 111235788888888775 56799999999
Q ss_pred CcEEEEeCC-ccccccCCCCcccceeEEeecccCcceEEEEeCCCce---eeecCCCCcEEEEecccCCCcCCccceeee
Q 023500 165 LTIKIWGAD-ITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI---IASGAADDSVQFFVESKDDLIDGPSYKMLL 240 (281)
Q Consensus 165 ~~i~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 240 (281)
-.|++||++ ++++.... .-...|..+.++|.-. ++++..+|. ++........ ......
T Consensus 233 e~i~~~DtRnm~kPl~~~-------------~v~GGVWRi~~~p~~~~~lL~~CMh~G~-ki~~~~~~~~----e~~~~~ 294 (339)
T KOG0280|consen 233 ECIRVLDTRNMGKPLFKA-------------KVGGGVWRIKHHPEIFHRLLAACMHNGA-KILDSSDKVL----EFQIVL 294 (339)
T ss_pred cceeeeehhcccCccccC-------------ccccceEEEEecchhhhHHHHHHHhcCc-eEEEeccccc----chheee
Confidence 999999987 33332211 1235577777777543 555555553 3333322110 011234
Q ss_pred eeccCCCCCeeEEEEcCCCCeeEEEeC-CCCeEE-EEEc
Q 023500 241 KKEKAHDMDVNSVQWSPGERRLLASAS-DDGMIK-IWEL 277 (281)
Q Consensus 241 ~~~~~h~~~v~~~~~~~~~~~~~~s~~-~Dg~v~-iw~~ 277 (281)
...+.|.+-.....|.... .+++||+ .|..++ +|-.
T Consensus 295 ~s~~~hdSl~YG~DWd~~~-~~lATCsFYDk~~~~~Wl~ 332 (339)
T KOG0280|consen 295 PSDKIHDSLCYGGDWDSKD-SFLATCSFYDKKIRQLWLH 332 (339)
T ss_pred eccccccceeecccccccc-ceeeeeeccccceeeeeee
Confidence 4556787777777886543 3677765 477755 7753
No 248
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.16 E-value=2.8e-09 Score=83.41 Aligned_cols=225 Identities=18% Similarity=0.293 Sum_probs=135.9
Q ss_pred CCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC--eeEEeEeecCC------------ccceeEEEecCCCC--eEEEE
Q 023500 47 ENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN--EFECVSVLQGH------------AQDVKMVQWHPTMD--VLFSC 110 (281)
Q Consensus 47 ~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~--~~~~~~~~~~~------------~~~v~~v~~~p~~~--~l~s~ 110 (281)
.+.|.+|.|...|.+|++|..+|.|-++.=.... ++.....++.| ...|..+.|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4578899999999999999999999988532211 22222233333 35688899999876 56777
Q ss_pred ecCCeEEEEeCCCCCCCC----------ceeeeeee-----------------eccCCccccEEEEEEccCCCEEEEeeC
Q 023500 111 SYDNTIKVWWAEDTDSDN----------WHCVQTIS-----------------ESNNGHSSTIWALSFNAKGDKLVSCSD 163 (281)
Q Consensus 111 s~d~~v~~w~~~~~~~~~----------~~~~~~~~-----------------~~~~~h~~~v~~~~~~~~~~~l~s~~~ 163 (281)
..|.+|++|.+....... ...+..+. ....+|+--++++.++.|.+.++++ .
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-D 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-D 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-c
Confidence 889999999876432211 00000000 1124788999999999999888876 4
Q ss_pred CCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC--ceeeecCCCCcEEEEecccCCCcCCccce-ee-
Q 023500 164 DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE--GIIASGAADDSVQFFVESKDDLIDGPSYK-ML- 239 (281)
Q Consensus 164 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~- 239 (281)
|-.|.+|+++....... ....++.. +. -....|++..|+|. .+++=.++.|++++-+.+...+.+..... ..
T Consensus 184 dLRINLWnlei~d~sFn--IVDIKP~n-mE-eLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEep 259 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFN--IVDIKPAN-ME-ELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEP 259 (433)
T ss_pred ceeeeeccccccCCcee--EEEccccC-HH-HHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccc
Confidence 77899998765432211 00000000 00 01345566677773 46777788999999987643332211100 00
Q ss_pred -----eeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 240 -----LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 240 -----~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
.....+--..|.++.|++.|++ +++-. =-+|+|||+.
T Consensus 260 edp~~rsffseiIsSISDvKFs~sGry-ilsRD-yltvk~wD~n 301 (433)
T KOG1354|consen 260 EDPSSRSFFSEIISSISDVKFSHSGRY-ILSRD-YLTVKLWDLN 301 (433)
T ss_pred cCCcchhhHHHHhhhhhceEEccCCcE-EEEec-cceeEEEecc
Confidence 0001111234778999998764 44432 2679999984
No 249
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.16 E-value=5.4e-08 Score=82.92 Aligned_cols=210 Identities=16% Similarity=0.199 Sum_probs=114.2
Q ss_pred cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC---CcEEEEEecCCCeeEEeEeecCCccceeEEEecC
Q 023500 26 TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD---KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP 102 (281)
Q Consensus 26 ~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p 102 (281)
.|.++|..+.. ...+..+...+...+|+|+|++|+.++.+ ..|.+|++..+... .+..+...+.++.|+|
T Consensus 171 ~l~~~d~~g~~---~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~----~~~~~~~~~~~~~~sp 243 (417)
T TIGR02800 171 ELQVADYDGAN---PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE----KVASFPGMNGAPAFSP 243 (417)
T ss_pred eEEEEcCCCCC---CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EeecCCCCccceEECC
Confidence 46677664433 23344566778899999999998876543 47999998765431 2223344566789999
Q ss_pred CCCeEE-EEecCC--eEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee-CCCc--EEEEeCCccc
Q 023500 103 TMDVLF-SCSYDN--TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS-DDLT--IKIWGADITR 176 (281)
Q Consensus 103 ~~~~l~-s~s~d~--~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~--i~~w~~~~~~ 176 (281)
+++.++ +.+.++ .|++|++.... ...+. .+........|+|+++.|+..+ .++. |.+++.+..+
T Consensus 244 Dg~~l~~~~~~~~~~~i~~~d~~~~~------~~~l~----~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~ 313 (417)
T TIGR02800 244 DGSKLAVSLSKDGNPDIYVMDLDGKQ------LTRLT----NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE 313 (417)
T ss_pred CCCEEEEEECCCCCccEEEEECCCCC------EEECC----CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 998665 555554 57777765432 11121 1223334568999998876654 3444 4444443221
Q ss_pred cccCCCCcccceeEEeecccCcceEEEEeCCCce-eeecCCC-C--cEEEEecccCCCcCCccceeeeeeccCCCCCeeE
Q 023500 177 MQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAAD-D--SVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNS 252 (281)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 252 (281)
. + .+. ..........|++++. ++....+ + .+.+++.... . ...+.. . .....
T Consensus 314 ~---------~---~l~-~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~------~-~~~l~~---~-~~~~~ 369 (417)
T TIGR02800 314 V---------R---RLT-FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG------G-ERVLTD---T-GLDES 369 (417)
T ss_pred E---------E---Eee-cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC------C-eEEccC---C-CCCCC
Confidence 1 1 111 1223345567787763 3333333 3 3444433221 1 111111 1 12334
Q ss_pred EEEcCCCCeeEEEeCCCCe--EEEEE
Q 023500 253 VQWSPGERRLLASASDDGM--IKIWE 276 (281)
Q Consensus 253 ~~~~~~~~~~~~s~~~Dg~--v~iw~ 276 (281)
..|+|+++.++.+...++. +.+.+
T Consensus 370 p~~spdg~~l~~~~~~~~~~~l~~~~ 395 (417)
T TIGR02800 370 PSFAPNGRMILYATTRGGRGVLGLVS 395 (417)
T ss_pred ceECCCCCEEEEEEeCCCcEEEEEEE
Confidence 5799998876655554443 44444
No 250
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=1e-08 Score=81.52 Aligned_cols=191 Identities=13% Similarity=0.141 Sum_probs=129.9
Q ss_pred EEEEeeCCCcEEEEecCCCc--eeeeeeecCCCCCeeEEEEcCC-CCEEEEecCC--CcEEEEEecCCCeeEEeEeec--
Q 023500 17 LLATASFDATTCIWEDVGGD--YECVATLEGHENEVKSVSWNAS-GTLLATCGRD--KSVWIWEVMPGNEFECVSVLQ-- 89 (281)
Q Consensus 17 ~l~tg~~d~~i~lw~~~~~~--~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d--~~v~~w~~~~~~~~~~~~~~~-- 89 (281)
.|++|-.+|.+.+|....+. ...+..+..+ ..+..+.-.|. ...+++||.. +.+++||+....+........
T Consensus 117 ~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD 195 (412)
T KOG3881|consen 117 TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPND 195 (412)
T ss_pred EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCc
Confidence 56678889999999876332 1222233222 45566666664 4566779999 899999997653221111111
Q ss_pred --C--CccceeEEEecCC--CCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeC
Q 023500 90 --G--HAQDVKMVQWHPT--MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD 163 (281)
Q Consensus 90 --~--~~~~v~~v~~~p~--~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 163 (281)
+ -.-.++.+.|-|. ...+++++.-+.+++||....+ +.+..+.. -..++.++...|.+..+++|..
T Consensus 196 ~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR----RPV~~fd~----~E~~is~~~l~p~gn~Iy~gn~ 267 (412)
T KOG3881|consen 196 RLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR----RPVAQFDF----LENPISSTGLTPSGNFIYTGNT 267 (412)
T ss_pred cccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC----cceeEecc----ccCcceeeeecCCCcEEEEecc
Confidence 0 0123467778776 6789999999999999887432 33443332 1356889999999999999999
Q ss_pred CCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC-ceeeecCCCCcEEEEeccc
Q 023500 164 DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE-GIIASGAADDSVQFFVESK 227 (281)
Q Consensus 164 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~~~~~~~~~ 227 (281)
-+.+..||...+... .+.+. .....+.++..+|. .++++++-|+.+|+++...
T Consensus 268 ~g~l~~FD~r~~kl~----------g~~~k-g~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 268 KGQLAKFDLRGGKLL----------GCGLK-GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred cchhheecccCceee----------ccccC-CccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 999999998754321 11122 24677888888888 4788999999999997764
No 251
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.15 E-value=3.5e-08 Score=90.70 Aligned_cols=158 Identities=16% Similarity=0.335 Sum_probs=96.4
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecC----C---------Cceeee------------------------------
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDV----G---------GDYECV------------------------------ 40 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~----~---------~~~~~~------------------------------ 40 (281)
..|.+++||||+++||....++++.+-... . +..+++
T Consensus 121 ~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~ 200 (928)
T PF04762_consen 121 SGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPK 200 (928)
T ss_pred CcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCc
Confidence 579999999999999988888887764311 0 000000
Q ss_pred ---eeecCCCCCeeEEEEcCCCCEEEEecC------CCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEe
Q 023500 41 ---ATLEGHENEVKSVSWNASGTLLATCGR------DKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS 111 (281)
Q Consensus 41 ---~~~~~h~~~v~~v~~~~~~~~l~s~~~------d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s 111 (281)
..+. ++..-..|+|..||.++|..+. -+.+|||+=. .... .+-..-..--.+++|.|.|++|++.-
T Consensus 201 ~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re--G~L~--stSE~v~gLe~~l~WrPsG~lIA~~q 275 (928)
T PF04762_consen 201 VDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE--GELQ--STSEPVDGLEGALSWRPSGNLIASSQ 275 (928)
T ss_pred cccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC--ceEE--eccccCCCccCCccCCCCCCEEEEEE
Confidence 0011 2334457899999999987764 2578888632 2111 11111122224789999999999877
Q ss_pred c---CCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 023500 112 Y---DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 112 ~---d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~ 173 (281)
. ...|-+| ++........ .+. .......|..+.|+++++.|+....|. |++|-..
T Consensus 276 ~~~~~~~VvFf--ErNGLrhgeF--~l~--~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~ 333 (928)
T PF04762_consen 276 RLPDRHDVVFF--ERNGLRHGEF--TLR--FDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRS 333 (928)
T ss_pred EcCCCcEEEEE--ecCCcEeeeE--ecC--CCCCCceeeEEEECCCCCEEEEEecCC-ceEEEee
Confidence 5 2234444 3333222111 111 112346789999999999999987665 9999653
No 252
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.15 E-value=3.7e-08 Score=83.72 Aligned_cols=161 Identities=11% Similarity=0.040 Sum_probs=89.7
Q ss_pred eeEEEEcCCCCE--E-EEeeCCC--cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecC-CC----cEEEEE
Q 023500 6 VRSCAWSPSGKL--L-ATASFDA--TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR-DK----SVWIWE 75 (281)
Q Consensus 6 i~~~~~~~~~~~--l-~tg~~d~--~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d~----~v~~w~ 75 (281)
+..=+|+|||+. + .+...++ .|.+.+..+++...+..+. +.....+|+|||++|+..+. ++ .+..|+
T Consensus 187 ~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~---g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~ 263 (428)
T PRK01029 187 SITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQ---GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFS 263 (428)
T ss_pred cccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCC---CCccceEECCCCCEEEEEECCCCCcceeEEEee
Confidence 344589999974 2 2444444 4666677666544454444 44456899999998775442 23 333466
Q ss_pred ecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEe-cCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC
Q 023500 76 VMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS-YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK 154 (281)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s-~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 154 (281)
+..+...........+........|+|+++.|+..+ .++...+|.+....... ....+. .+...+....|+|+
T Consensus 264 ~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~--~~~~lt----~~~~~~~~p~wSPD 337 (428)
T PRK01029 264 LETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ--SPRLLT----KKYRNSSCPAWSPD 337 (428)
T ss_pred cccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc--ceEEec----cCCCCccceeECCC
Confidence 543211112222222223346789999999776655 46666666432111000 111121 12234567899999
Q ss_pred CCEEEEeeCC---CcEEEEeCCcc
Q 023500 155 GDKLVSCSDD---LTIKIWGADIT 175 (281)
Q Consensus 155 ~~~l~s~~~d---~~i~~w~~~~~ 175 (281)
++.|+..+.+ ..|.+||...+
T Consensus 338 G~~Laf~~~~~g~~~I~v~dl~~g 361 (428)
T PRK01029 338 GKKIAFCSVIKGVRQICVYDLATG 361 (428)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCC
Confidence 9988766543 35777877543
No 253
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.13 E-value=2e-09 Score=91.81 Aligned_cols=243 Identities=15% Similarity=0.238 Sum_probs=151.0
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCc-------------eeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCc
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGD-------------YECVATLEGHENEVKSVSWNASGTLLATCGRDKS 70 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~-------------~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~ 70 (281)
....|++|+....++|+|+.||.+++-...+.. ...-++++||.+.|.-+.|+...+.|-|+..+|-
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence 456799999999999999999999998643211 1112467899999999999999899999999999
Q ss_pred EEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEE
Q 023500 71 VWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALS 150 (281)
Q Consensus 71 v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 150 (281)
|.||-+-.+.-.+. .+-....+.|.+.+|+.+|..+..+-+||.|-+=.++.. +.|- ..+ ++ .....+.
T Consensus 95 IiVWmlykgsW~EE-MiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGN--RIwg--KeL----kg--~~l~hv~ 163 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEE-MINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGN--RIWG--KEL----KG--QLLAHVL 163 (1189)
T ss_pred EEEEeeecccHHHH-HhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccc--eecc--hhc----ch--hecccee
Confidence 99999865531111 111234567899999999999999999998876433321 1110 011 11 1234678
Q ss_pred EccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC---------CceeeecCCCCcEE
Q 023500 151 FNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR---------EGIIASGAADDSVQ 221 (281)
Q Consensus 151 ~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---------~~~~~~~~~d~~~~ 221 (281)
|++|.+.++.+-..|.+.+||... ....+-..................+-.+.|.. ...++.+-.+|.++
T Consensus 164 ws~D~~~~Lf~~ange~hlydnqg-nF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Q 242 (1189)
T KOG2041|consen 164 WSEDLEQALFKKANGETHLYDNQG-NFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQ 242 (1189)
T ss_pred ecccHHHHHhhhcCCcEEEecccc-cHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceeh
Confidence 999998888888999999998642 11111111110000000011122344444432 23567777778777
Q ss_pred EEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCC
Q 023500 222 FFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDD 269 (281)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~D 269 (281)
+.....+. .| .++. . ...+..+.|+++|. +++.||.|
T Consensus 243 iMR~eND~---~P---vv~d--t--gm~~vgakWnh~G~-vLAvcG~~ 279 (1189)
T KOG2041|consen 243 IMRSENDP---EP---VVVD--T--GMKIVGAKWNHNGA-VLAVCGND 279 (1189)
T ss_pred hhhhcCCC---CC---eEEe--c--ccEeecceecCCCc-EEEEccCc
Confidence 76322110 11 1111 1 14577889999875 56777655
No 254
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=9.8e-09 Score=85.50 Aligned_cols=213 Identities=16% Similarity=0.268 Sum_probs=127.6
Q ss_pred CCCCCeeEEEEcCCCCEE-EEecCCCcEEEEEecCCCe-eE--------EeEe----------------ecCCc------
Q 023500 45 GHENEVKSVSWNASGTLL-ATCGRDKSVWIWEVMPGNE-FE--------CVSV----------------LQGHA------ 92 (281)
Q Consensus 45 ~h~~~v~~v~~~~~~~~l-~s~~~d~~v~~w~~~~~~~-~~--------~~~~----------------~~~~~------ 92 (281)
+|...-+.|..+|||+++ ++|-.--.|++||+.+-.. ++ .... +.-|.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 477778899999999985 5555677999999853210 00 0000 00010
Q ss_pred -----cceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcE
Q 023500 93 -----QDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTI 167 (281)
Q Consensus 93 -----~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i 167 (281)
...+.++++.-.+=|+.++....|+=++++.+. .+. +.....+.++++..++...+|++|+.+|.+
T Consensus 129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGr-----fL~----P~~~~~~~lN~v~in~~hgLla~Gt~~g~V 199 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGR-----FLN----PFETDSGELNVVSINEEHGLLACGTEDGVV 199 (703)
T ss_pred eeecCcCCccccccCCCccEEEeecCcceEEEEccccc-----ccc----ccccccccceeeeecCccceEEecccCceE
Confidence 011233344334444555555556555665542 111 122234678999999998899999999999
Q ss_pred EEEeCCccccccCCCCcccceeEEeec-ccCcceEEEEeCCCce-eeecCCCCcEEEEecccCCCcCCccceeeeeeccC
Q 023500 168 KIWGADITRMQSGDGYASWRHLCTISG-YHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKA 245 (281)
Q Consensus 168 ~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (281)
.+||...+..-....... .+...++ -....|++++|..+|+ ++.|.++|.+.+|++... ..++...+.
T Consensus 200 EfwDpR~ksrv~~l~~~~--~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~--------~pl~~kdh~ 269 (703)
T KOG2321|consen 200 EFWDPRDKSRVGTLDAAS--SVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS--------KPLLVKDHG 269 (703)
T ss_pred EEecchhhhhheeeeccc--ccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC--------CceeecccC
Confidence 999986543221111110 0000111 1234588999999775 788889999999977542 123334456
Q ss_pred CCCCeeEEEEcCCCC-eeEEEeCCCCeEEEEEc
Q 023500 246 HDMDVNSVQWSPGER-RLLASASDDGMIKIWEL 277 (281)
Q Consensus 246 h~~~v~~~~~~~~~~-~~~~s~~~Dg~v~iw~~ 277 (281)
...+|..+.|.+.+. ..++|. +...++|||-
T Consensus 270 ~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~ 301 (703)
T KOG2321|consen 270 YELPIKKLDWQDTDQQNKVVSM-DKRILKIWDE 301 (703)
T ss_pred CccceeeecccccCCCceEEec-chHHhhhccc
Confidence 678899999987532 334443 3567999984
No 255
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.09 E-value=1.2e-06 Score=67.42 Aligned_cols=242 Identities=17% Similarity=0.224 Sum_probs=129.1
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCC---CCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeE-
Q 023500 8 SCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHE---NEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE- 83 (281)
Q Consensus 8 ~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~---~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~- 83 (281)
-++.+.+|++||. -.|..|.|=...++=..++....-.. -.=..++||||+..||.+...|+|+++|+....-+.
T Consensus 2 ~~~~~~~Gk~lAi-~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 2 HLALSSDGKLLAI-LQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVI 80 (282)
T ss_pred ceeecCCCcEEEE-EeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEc
Confidence 3567889999976 45777777543321111222222122 234689999999999999999999999986432110
Q ss_pred -EeEeec-CCccceeEEEecCC------CCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCC
Q 023500 84 -CVSVLQ-GHAQDVKMVQWHPT------MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG 155 (281)
Q Consensus 84 -~~~~~~-~~~~~v~~v~~~p~------~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 155 (281)
+..... .-...|..+.|-+- ...|+.-..+|.++=+-+....+...+....+... ..++..|.++.|+|..
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~-~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFS-SHYPHGINSAVYHPKH 159 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEec-ccCCCceeEEEEcCCC
Confidence 000011 11234555555332 12466667888887776643333333333333321 2346789999999998
Q ss_pred CEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCc------EEEEecccCC
Q 023500 156 DKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDS------VQFFVESKDD 229 (281)
Q Consensus 156 ~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~------~~~~~~~~~~ 229 (281)
++|+.|+....= +.......-++..||.+.. . |-...+....|+. ..++..
T Consensus 160 ~LLlVgG~~~~~-----~~~s~a~~~GLtaWRiL~~------~--------Pyyk~v~~~~~~~~~~~~~~~~~~~---- 216 (282)
T PF15492_consen 160 RLLLVGGCEQNQ-----DGMSKASSCGLTAWRILSD------S--------PYYKQVTSSEDDITASSKRRGLLRI---- 216 (282)
T ss_pred CEEEEeccCCCC-----CccccccccCceEEEEcCC------C--------CcEEEccccCccccccccccceeec----
Confidence 887777643320 0000011123333332211 1 1111111111111 011100
Q ss_pred CcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 230 LIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 230 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
... .+......-...|..+..+|++. +|++...+|.|.+|++.+.
T Consensus 217 ----~~~-~~fs~~~~~~d~i~kmSlSPdg~-~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 217 ----PSF-KFFSRQGQEQDGIFKMSLSPDGS-LLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred ----cce-eeeeccccCCCceEEEEECCCCC-EEEEEEcCCeEEEEecCcc
Confidence 000 11111222345688999999986 6889999999999998763
No 256
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.08 E-value=4.2e-08 Score=81.90 Aligned_cols=193 Identities=12% Similarity=0.190 Sum_probs=129.9
Q ss_pred CCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEe------cC--------------CCCeEEEEecCCeE
Q 023500 57 ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQW------HP--------------TMDVLFSCSYDNTI 116 (281)
Q Consensus 57 ~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~------~p--------------~~~~l~s~s~d~~v 116 (281)
|...++|....||.+++|+...++..+.......-.+.+++..| +| +...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 45678899999999999998765432211111111223344444 22 22357778888999
Q ss_pred EEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeeccc
Q 023500 117 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYH 196 (281)
Q Consensus 117 ~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (281)
.++.+..... ...+ ....|.+.|.++.++.+-..|.+++.|..+-.|+.+..+ ..+.. ...
T Consensus 83 ~~ys~~~g~i-----t~~~--st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~-----------~~~~~-~~~ 143 (541)
T KOG4547|consen 83 LLYSVAGGEI-----TAKL--STDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV-----------IIRIW-KEQ 143 (541)
T ss_pred EEEEecCCeE-----EEEE--ecCCCCCcceeeecccccCceEecCCceeEEEEecccce-----------eeeee-ccC
Confidence 9987665431 1112 224689999999999988899999999999999876432 22222 234
Q ss_pred CcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCC-----CCeeEEEeCCCC
Q 023500 197 DRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPG-----ERRLLASASDDG 270 (281)
Q Consensus 197 ~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~~~~~s~~~Dg 270 (281)
...+.+++.+|++ ++++++ +.+.+|+... +..+....+|.++|++++|-.. |.+++.+...+.
T Consensus 144 ~~~~~sl~is~D~~~l~~as--~~ik~~~~~~---------kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r 212 (541)
T KOG4547|consen 144 KPLVSSLCISPDGKILLTAS--RQIKVLDIET---------KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAER 212 (541)
T ss_pred CCccceEEEcCCCCEEEecc--ceEEEEEccC---------ceEEEEecCCCcceEEEEEEEeccccccceeeecccccc
Confidence 5667788888886 444444 4688997754 2345567799999999999876 667777777777
Q ss_pred eEEEEEccc
Q 023500 271 MIKIWELAN 279 (281)
Q Consensus 271 ~v~iw~~~~ 279 (281)
.+.+|.+..
T Consensus 213 ~i~~w~v~~ 221 (541)
T KOG4547|consen 213 GITVWVVEK 221 (541)
T ss_pred ceeEEEEEc
Confidence 888998764
No 257
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.08 E-value=5.7e-10 Score=60.90 Aligned_cols=38 Identities=32% Similarity=0.897 Sum_probs=36.0
Q ss_pred eeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEE
Q 023500 38 ECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWE 75 (281)
Q Consensus 38 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~ 75 (281)
+++.++.+|.+.|++++|+|++.+|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46788999999999999999999999999999999997
No 258
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=5.8e-07 Score=76.95 Aligned_cols=127 Identities=17% Similarity=0.175 Sum_probs=78.0
Q ss_pred EEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC---CcEEEEEecCCCeeEEeEeecCCccceeEEEecCC
Q 023500 27 TCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD---KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT 103 (281)
Q Consensus 27 i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~ 103 (281)
|.++|..+.. ...+..+...+...+|+|||++|+..+.+ ..|.+|++..+.. +.+ ......+....|+|+
T Consensus 181 l~~~d~~g~~---~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~-~~l---~~~~g~~~~~~~SpD 253 (430)
T PRK00178 181 LQRSDYDGAR---AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR-EQI---TNFEGLNGAPAWSPD 253 (430)
T ss_pred EEEECCCCCC---ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE-EEc---cCCCCCcCCeEECCC
Confidence 6666665543 23344567788999999999998766543 3688888865542 222 222233456899999
Q ss_pred CCeEE-EEecCC--eEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee-CCCcEEEE
Q 023500 104 MDVLF-SCSYDN--TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS-DDLTIKIW 170 (281)
Q Consensus 104 ~~~l~-s~s~d~--~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~~w 170 (281)
++.++ +.+.++ .|+++++.... ...+. .+........|+|+++.++..+ .++...+|
T Consensus 254 G~~la~~~~~~g~~~Iy~~d~~~~~------~~~lt----~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy 314 (430)
T PRK00178 254 GSKLAFVLSKDGNPEIYVMDLASRQ------LSRVT----NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIY 314 (430)
T ss_pred CCEEEEEEccCCCceEEEEECCCCC------eEEcc----cCCCCcCCeEECCCCCEEEEEECCCCCceEE
Confidence 98765 555555 57777765432 11121 2233445678999998766554 44554444
No 259
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.03 E-value=1.4e-08 Score=81.07 Aligned_cols=158 Identities=18% Similarity=0.171 Sum_probs=106.1
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEecCCCc--eeeeeeecCCCCCeeEEEEcCCC---CEEEEecCCCcEEEEEecCCC
Q 023500 6 VRSCAWSPSGKLLATASFDATTCIWEDVGGD--YECVATLEGHENEVKSVSWNASG---TLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 6 i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~--~~~~~~~~~h~~~v~~v~~~~~~---~~l~s~~~d~~v~~w~~~~~~ 80 (281)
...+.++|+++++|.+..+..+.+++..... .+++...-. ...-+++.|-.+. .....+|+...+.+|....
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-- 141 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADS-- 141 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccc--
Confidence 3456688899999999888887676654433 222222211 1222334443332 2333455666666665532
Q ss_pred eeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
.+...+.||-+-+..|+|+|+++.|+++-.|..|++-+...... +...+-||+.=|..++.-++ +.|++
T Consensus 142 --~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~--------IesfclGH~eFVS~isl~~~-~~LlS 210 (390)
T KOG3914|consen 142 --GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFV--------IESFCLGHKEFVSTISLTDN-YLLLS 210 (390)
T ss_pred --cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccc--------hhhhccccHhheeeeeeccC-ceeee
Confidence 23455679999999999999999999999999999876544321 12223589999998888655 46899
Q ss_pred eeCCCcEEEEeCCcccc
Q 023500 161 CSDDLTIKIWGADITRM 177 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~~~ 177 (281)
++.|+++++||...++.
T Consensus 211 ~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 211 GSGDKTLRLWDITSGKL 227 (390)
T ss_pred cCCCCcEEEEecccCCc
Confidence 99999999999876654
No 260
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.03 E-value=3.4e-07 Score=84.33 Aligned_cols=244 Identities=18% Similarity=0.256 Sum_probs=150.1
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEE----ecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCC
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIW----EDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw----~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~ 79 (281)
+.|..+.|-++..-++.+..+|.|.+. +......+.+..+ +..|.+++||||+..|+....++++.+-+-.-.
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v---d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd 152 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV---DSGILAASWSPDEELLALVTGEGNLLLMTRDFD 152 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE---cCcEEEEEECCCcCEEEEEeCCCEEEEEeccce
Confidence 568888999999888888999999998 6666666666655 478999999999999888777787776542100
Q ss_pred ------------CeeEEeE---------------------------------eecCCccceeEEEecCCCCeEEEEec--
Q 023500 80 ------------NEFECVS---------------------------------VLQGHAQDVKMVQWHPTMDVLFSCSY-- 112 (281)
Q Consensus 80 ------------~~~~~~~---------------------------------~~~~~~~~v~~v~~~p~~~~l~s~s~-- 112 (281)
++.+.+. .+. +.+.-..++|-.||.+++..+-
T Consensus 153 ~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 153 PISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred EEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEc
Confidence 0000000 001 2334567889999999987764
Q ss_pred -C---CeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeC---CCcEEEEeCCccccccCCCCcc
Q 023500 113 -D---NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD---DLTIKIWGADITRMQSGDGYAS 185 (281)
Q Consensus 113 -d---~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---d~~i~~w~~~~~~~~~~~~~~~ 185 (281)
+ ..+|||+-+.. +....+.. .+.-.+++|.|.|.++++.-. ...|.+|.-+..+
T Consensus 232 ~~~~~R~iRVy~ReG~-------L~stSE~v---~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLr--------- 292 (928)
T PF04762_consen 232 ETGSRRVIRVYSREGE-------LQSTSEPV---DGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLR--------- 292 (928)
T ss_pred CCCceeEEEEECCCce-------EEeccccC---CCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcE---------
Confidence 2 47889943311 11111111 222346899999998888764 3456666432111
Q ss_pred cceeEEee-cccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEE
Q 023500 186 WRHLCTIS-GYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLA 264 (281)
Q Consensus 186 ~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 264 (281)
...+.+. ......+..+.|+.++.+++......+++|..+.. ....|+.+.. .....+..+.|+|..+..+.
T Consensus 293 -hgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NY----HWYLKqei~~--~~~~~~~~~~Wdpe~p~~L~ 365 (928)
T PF04762_consen 293 -HGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNY----HWYLKQEIRF--SSSESVNFVKWDPEKPLRLH 365 (928)
T ss_pred -eeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCC----EEEEEEEEEc--cCCCCCCceEECCCCCCEEE
Confidence 0111111 12356789999999987666665656999955321 1222222221 12233555999997665555
Q ss_pred EeCCCCeEEEEEc
Q 023500 265 SASDDGMIKIWEL 277 (281)
Q Consensus 265 s~~~Dg~v~iw~~ 277 (281)
....+|.+..+++
T Consensus 366 v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 366 VLTSNGQYEIYDF 378 (928)
T ss_pred EEecCCcEEEEEE
Confidence 6666677666554
No 261
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.03 E-value=8e-10 Score=102.50 Aligned_cols=144 Identities=17% Similarity=0.339 Sum_probs=112.5
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEec---CCCcEEEEEecCCC
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCG---RDKSVWIWEVMPGN 80 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~---~d~~v~~w~~~~~~ 80 (281)
..|+.+.|+.+|.-+..+..||.+.+|.... .+....+.|+.....+.|-. ..+++++ +++++.+||.....
T Consensus 2252 s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p---k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~ 2326 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQGNKFGIVDGDGDLSLWQASP---KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPP 2326 (2439)
T ss_pred chhhhhhhcccCCceeeeccCCceeecccCC---cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCc
Confidence 3567788999999999999999999998763 34567788999999888865 5666654 67899999965443
Q ss_pred eeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
....+. ++|...++++++-|..+++++|+.+|.|++||+.... + .|.-+. ++ ...++++
T Consensus 2327 ~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrq---------l-----~h~~~~----~~-~~~~f~~ 2385 (2439)
T KOG1064|consen 2327 MNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQ---------L-----RHTFQA----LD-TREYFVT 2385 (2439)
T ss_pred ccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHH---------H-----HHHhhh----hh-hhheeec
Confidence 333333 7899999999999999999999999999999886532 1 122222 33 5579999
Q ss_pred eeCCCcEEEEeCC
Q 023500 161 CSDDLTIKIWGAD 173 (281)
Q Consensus 161 ~~~d~~i~~w~~~ 173 (281)
|+..|.++||++.
T Consensus 2386 ~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2386 GSSEGNIKIWRLS 2398 (2439)
T ss_pred cCcccceEEEEcc
Confidence 9999999999875
No 262
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=3.5e-07 Score=78.42 Aligned_cols=213 Identities=15% Similarity=0.163 Sum_probs=112.7
Q ss_pred cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecC-CC--cEEEEEecCCCeeEEeEeecCCccceeEEEecC
Q 023500 26 TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR-DK--SVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP 102 (281)
Q Consensus 26 ~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d~--~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p 102 (281)
.|.++|..+... ..+..+...+.+..|+|||++|+..+. ++ .|.+||+..++. ..+.... .......|+|
T Consensus 199 ~l~i~d~dG~~~---~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~-~~lt~~~---g~~~~~~wSP 271 (448)
T PRK04792 199 QLMIADYDGYNE---QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR-EKVTSFP---GINGAPRFSP 271 (448)
T ss_pred EEEEEeCCCCCc---eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe-EEecCCC---CCcCCeeECC
Confidence 466666655432 233345678889999999998876543 33 577788765442 2222222 2235789999
Q ss_pred CCCeEE-EEecCCe--EEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee-CCCcEEEE--eCCccc
Q 023500 103 TMDVLF-SCSYDNT--IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS-DDLTIKIW--GADITR 176 (281)
Q Consensus 103 ~~~~l~-s~s~d~~--v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~~w--~~~~~~ 176 (281)
+++.|+ +.+.++. |++++++... ...+. .+........|+|+++.++..+ .++...+| +.+.++
T Consensus 272 DG~~La~~~~~~g~~~Iy~~dl~tg~------~~~lt----~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~ 341 (448)
T PRK04792 272 DGKKLALVLSKDGQPEIYVVDIATKA------LTRIT----RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK 341 (448)
T ss_pred CCCEEEEEEeCCCCeEEEEEECCCCC------eEECc----cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 999765 5566775 5566654432 11221 2233455678999998776544 45555555 433221
Q ss_pred cccCCCCcccceeEEeecccCcceEEEEeCCCce--eeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEE
Q 023500 177 MQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI--IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQ 254 (281)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 254 (281)
. +.+. . .........|+|+|. +++...++..++|..... .+. . ..+... .. .....
T Consensus 342 ~---------~~Lt-~---~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~---~g~-~-~~lt~~-~~---d~~ps 399 (448)
T PRK04792 342 V---------SRLT-F---EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLE---TGA-M-QVLTST-RL---DESPS 399 (448)
T ss_pred E---------EEEe-c---CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECC---CCC-e-EEccCC-CC---CCCce
Confidence 1 1111 1 111123346777763 333334454555543211 111 1 111111 11 12347
Q ss_pred EcCCCCeeEEEeCCCCe--EEEEEc
Q 023500 255 WSPGERRLLASASDDGM--IKIWEL 277 (281)
Q Consensus 255 ~~~~~~~~~~s~~~Dg~--v~iw~~ 277 (281)
|+|+++.++.+...++. +.+++.
T Consensus 400 ~spdG~~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 400 VAPNGTMVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred ECCCCCEEEEEEecCCceEEEEEEC
Confidence 99999877766666665 555554
No 263
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.02 E-value=1.5e-08 Score=78.51 Aligned_cols=221 Identities=16% Similarity=0.259 Sum_probs=135.4
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCc---eeeeeeecCCC------------CCeeEEEEcCC-CC-EEEEe
Q 023500 3 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGD---YECVATLEGHE------------NEVKSVSWNAS-GT-LLATC 65 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~---~~~~~~~~~h~------------~~v~~v~~~~~-~~-~l~s~ 65 (281)
.+.|+++.|...|.||+||...|-+.+|...... .+....+++|. +.|..+.|-.+ ++ .++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 3679999999999999999999999999765432 22334455555 34677877544 32 46666
Q ss_pred cCCCcEEEEEecCCCee----------------------------------E-----EeEee-cCCccceeEEEecCCCC
Q 023500 66 GRDKSVWIWEVMPGNEF----------------------------------E-----CVSVL-QGHAQDVKMVQWHPTMD 105 (281)
Q Consensus 66 ~~d~~v~~w~~~~~~~~----------------------------------~-----~~~~~-~~~~~~v~~v~~~p~~~ 105 (281)
..|++|++|.+...... + +.++. .+|..-++++.++.+..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 78899999987532100 0 01112 46778889999999988
Q ss_pred eEEEEecCCeEEEEeCCCCCCCCceeeeeeee-ccCCccccEEEEEEccCC-CEEEEeeCCCcEEEEeCCccccccCCCC
Q 023500 106 VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISE-SNNGHSSTIWALSFNAKG-DKLVSCSDDLTIKIWGADITRMQSGDGY 183 (281)
Q Consensus 106 ~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~~w~~~~~~~~~~~~~ 183 (281)
.+++ +.|=.|.+|.++-.+. .+ .+..+.. ....-...+++..|+|.. ..+.-.+..|.|++-|++... ..+..
T Consensus 186 t~lS-aDdLrINLWnl~i~D~-sF-nIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~a--lcdn~ 260 (460)
T COG5170 186 TLLS-ADDLRINLWNLEIIDG-SF-NIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSA--LCDNS 260 (460)
T ss_pred eeee-ccceeeeeccccccCC-ce-EEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhh--hccCc
Confidence 8887 4577999997765431 11 1111100 000113557888999864 456666778999999875211 00100
Q ss_pred cccceeE----Eee--cccCcceEEEEeCCCceeeecCCCCcEEEEecccC
Q 023500 184 ASWRHLC----TIS--GYHDRTIFSVHWSREGIIASGAADDSVQFFVESKD 228 (281)
Q Consensus 184 ~~~~~~~----~~~--~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 228 (281)
.++-... ... ..-...|..+.|+++|.++..-.-.++.+|+++..
T Consensus 261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~ 311 (460)
T COG5170 261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMA 311 (460)
T ss_pred hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccc
Confidence 0000000 000 01134566788999996666556678999987653
No 264
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.99 E-value=5.4e-09 Score=89.49 Aligned_cols=252 Identities=21% Similarity=0.331 Sum_probs=149.7
Q ss_pred eeEEEEcCCC--CE-EEEeeCCCcEEEEecCCCc-eeeeeeecCCCCCeeEEEEcCC-CCEEEEecCCCcEEEEEecCCC
Q 023500 6 VRSCAWSPSG--KL-LATASFDATTCIWEDVGGD-YECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 6 i~~~~~~~~~--~~-l~tg~~d~~i~lw~~~~~~-~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
|-...|+|.. .+ +++-+ ...-.+|+..... ...-..+.||...|+.+.|+|. ...+++++.|-.+..||++...
T Consensus 70 vad~qws~h~a~~~wiVsts-~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~ 148 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTS-NQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH 148 (1081)
T ss_pred hcceecccCCCCceeEEecC-cchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC
Confidence 3345666643 33 44433 4445578753321 1122345689999999999994 6689999999999999998665
Q ss_pred eeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC-CCEEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK-GDKLV 159 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~ 159 (281)
. +...+..-......|+|+.....+.+.+..+.|++||...... + + -..++|...|+.++|..- ...+.
T Consensus 149 ~--p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~-p------l-~s~K~~vs~vn~~~fnr~~~s~~~ 218 (1081)
T KOG0309|consen 149 R--PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGST-P------L-CSLKGHVSSVNSIDFNRFKYSEIM 218 (1081)
T ss_pred c--ceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCc-c------e-EEecccceeeehHHHhhhhhhhhc
Confidence 3 2344444345578899998777777778889999998865421 1 1 112458888999998753 34688
Q ss_pred EeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC--CceeeecCC-CCcEEEEecccCCCcCC-cc
Q 023500 160 SCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR--EGIIASGAA-DDSVQFFVESKDDLIDG-PS 235 (281)
Q Consensus 160 s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~-d~~~~~~~~~~~~~~~~-~~ 235 (281)
+++.|+++++||.....-. +.. +. ..+.++..-.+.| +|+.++-.. +..+..+.....+.... ..
T Consensus 219 s~~~d~tvkfw~y~kSt~e-------~~~--~v--tt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~ 287 (1081)
T KOG0309|consen 219 SSSNDGTVKFWDYSKSTTE-------SKR--TV--TTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFD 287 (1081)
T ss_pred ccCCCCceeeecccccccc-------cce--ec--cccCcceeccccccCceeEeccccCCeeeeeccccchhhhhcccc
Confidence 9999999999986421100 000 00 1233444444444 333332222 22333333322221110 00
Q ss_pred ceeeeeeccCCCCCeeEEEEcC--------CC-CeeEEEeCCCCeEEEEEccc
Q 023500 236 YKMLLKKEKAHDMDVNSVQWSP--------GE-RRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 236 ~~~~~~~~~~h~~~v~~~~~~~--------~~-~~~~~s~~~Dg~v~iw~~~~ 279 (281)
...-+....+|...|....|-. +. .+.|+|-+.|..||+|-+.+
T Consensus 288 ~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 288 LNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred CCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 1122344568887776555533 22 23578999999999998754
No 265
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=2.6e-08 Score=80.79 Aligned_cols=163 Identities=19% Similarity=0.214 Sum_probs=111.5
Q ss_pred CCccceeEEEEcCCCCEEEEeeCCCcEEEEecCC-CceeeeeeecCCCCCeeEEEEcCCCCEEEEecC-CCcEEEEEecC
Q 023500 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVG-GDYECVATLEGHENEVKSVSWNASGTLLATCGR-DKSVWIWEVMP 78 (281)
Q Consensus 1 ~h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~-~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d~~v~~w~~~~ 78 (281)
||.+.|+-+ +..-.+++.+++.||.++.|.... .-.+.++.+..|-+.|.+++.+.+|..+.|.+. |..++++|+.+
T Consensus 7 mhrd~i~hv-~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHV-FPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeE-eeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 788888877 445678999999999999997654 334567778889999999999999999999888 99999999976
Q ss_pred CCeeEEeEeecCCccceeEEEecCCC---CeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCC
Q 023500 79 GNEFECVSVLQGHAQDVKMVQWHPTM---DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG 155 (281)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~v~~~p~~---~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 155 (281)
..-..-+. +.--...+.+ -.+|.. .+-++.-.++.+.++|-.... |.. .....-|..+|.++.++|.+
T Consensus 86 ~DminmiK-L~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~-----~q~--~~fkklH~sPV~~i~y~qa~ 156 (558)
T KOG0882|consen 86 FDMINMIK-LVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDF-----CQD--GYFKKLHFSPVKKIRYNQAG 156 (558)
T ss_pred cchhhhcc-cccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCc-----Ccc--ceecccccCceEEEEeeccc
Confidence 54211111 1100111111 112221 123344456788888543221 111 11123588999999999999
Q ss_pred CEEEEeeCCCcEEEEeCC
Q 023500 156 DKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 156 ~~l~s~~~d~~i~~w~~~ 173 (281)
+.+++....|+|..|..+
T Consensus 157 Ds~vSiD~~gmVEyWs~e 174 (558)
T KOG0882|consen 157 DSAVSIDISGMVEYWSAE 174 (558)
T ss_pred cceeeccccceeEeecCC
Confidence 999999999999999664
No 266
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.94 E-value=8.1e-08 Score=80.25 Aligned_cols=145 Identities=19% Similarity=0.268 Sum_probs=114.0
Q ss_pred CCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccc
Q 023500 15 GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQD 94 (281)
Q Consensus 15 ~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~ 94 (281)
..++|-|-.-|.|.+|+...++..-...-..|.+.|.++.++.+-..|.|+++|+.+-.|+..... .++.+.+....
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~---~~~~~~~~~~~ 146 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV---IIRIWKEQKPL 146 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce---eeeeeccCCCc
Confidence 347888889999999998887654333335799999999999988899999999999999986543 45667778888
Q ss_pred eeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC-----CCEEEEe-eCCCcEE
Q 023500 95 VKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK-----GDKLVSC-SDDLTIK 168 (281)
Q Consensus 95 v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~~l~s~-~~d~~i~ 168 (281)
+.+++.+|++..++++| +.|++|++++.+ .+.++ .||.++|.++.|--. |.++++. ..+..+.
T Consensus 147 ~~sl~is~D~~~l~~as--~~ik~~~~~~ke-----vv~~f----tgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~ 215 (541)
T KOG4547|consen 147 VSSLCISPDGKILLTAS--RQIKVLDIETKE-----VVITF----TGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGIT 215 (541)
T ss_pred cceEEEcCCCCEEEecc--ceEEEEEccCce-----EEEEe----cCCCcceEEEEEEEeccccccceeeecccccccee
Confidence 99999999999999865 799999888653 33333 589999999999765 5666554 4456678
Q ss_pred EEeCC
Q 023500 169 IWGAD 173 (281)
Q Consensus 169 ~w~~~ 173 (281)
+|-++
T Consensus 216 ~w~v~ 220 (541)
T KOG4547|consen 216 VWVVE 220 (541)
T ss_pred EEEEE
Confidence 88543
No 267
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.93 E-value=9.8e-06 Score=66.34 Aligned_cols=246 Identities=11% Similarity=0.034 Sum_probs=118.4
Q ss_pred EcCCCCEEEEeeC----------CCcEEEEecCCCceeeeeeecCC-------CCCeeEEEEcCCCCEEEEec-C-CCcE
Q 023500 11 WSPSGKLLATASF----------DATTCIWEDVGGDYECVATLEGH-------ENEVKSVSWNASGTLLATCG-R-DKSV 71 (281)
Q Consensus 11 ~~~~~~~l~tg~~----------d~~i~lw~~~~~~~~~~~~~~~h-------~~~v~~v~~~~~~~~l~s~~-~-d~~v 71 (281)
++|||+.|..+.. +..|.+||..+.+. +..+.-- ...-..++++|||++|+... . +..|
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~--~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V 130 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP--IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAV 130 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE--EeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEE
Confidence 8999997765554 67899999887753 3333311 11223688999999988766 3 6899
Q ss_pred EEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeecc--CCccccEEEE
Q 023500 72 WIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESN--NGHSSTIWAL 149 (281)
Q Consensus 72 ~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~ 149 (281)
-+.|+...+....+.+ + .+..-...+++. ...-+.|++......+....... ....+.... .....+
T Consensus 131 ~VvD~~~~kvv~ei~v--p--~~~~vy~t~e~~--~~~~~~Dg~~~~v~~d~~g~~~~-~~~~vf~~~~~~v~~rP---- 199 (352)
T TIGR02658 131 GVVDLEGKAFVRMMDV--P--DCYHIFPTANDT--FFMHCRDGSLAKVGYGTKGNPKI-KPTEVFHPEDEYLINHP---- 199 (352)
T ss_pred EEEECCCCcEEEEEeC--C--CCcEEEEecCCc--cEEEeecCceEEEEecCCCceEE-eeeeeecCCccccccCC----
Confidence 9999976653222221 0 001111111111 11223455443333322211000 000010000 000111
Q ss_pred EEcc-CCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc--eee-ecCCC--------
Q 023500 150 SFNA-KGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIA-SGAAD-------- 217 (281)
Q Consensus 150 ~~~~-~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~-~~~~d-------- 217 (281)
.|.+ +++++..... |+|.+.|+...................-.+.......-+.+++++ +++ +-...
T Consensus 200 ~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~ 278 (352)
T TIGR02658 200 AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTAS 278 (352)
T ss_pred ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCC
Confidence 3445 7776666555 999999853221111100000000000001111112225666553 222 21111
Q ss_pred CcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCC-eeEEEeCCCCeEEEEEcccC
Q 023500 218 DSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGER-RLLASASDDGMIKIWELANT 280 (281)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~~s~~~Dg~v~iw~~~~~ 280 (281)
+.+.+++.... +....... ...+..++++|+++ .++++...++.|.+.|..+.
T Consensus 279 ~~V~ViD~~t~--------kvi~~i~v--G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 279 RFLFVVDAKTG--------KRLRKIEL--GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred CEEEEEECCCC--------eEEEEEeC--CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence 34555544321 22222222 34688999999998 66767777899999998653
No 268
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.91 E-value=3.1e-07 Score=78.16 Aligned_cols=157 Identities=17% Similarity=0.108 Sum_probs=87.9
Q ss_pred eEEEEcCCCCEEEEeeC-CC--c--EEEEecCCCce-eeeeeecCCCCCeeEEEEcCCCCEEEEec-CCCcEEEEEecCC
Q 023500 7 RSCAWSPSGKLLATASF-DA--T--TCIWEDVGGDY-ECVATLEGHENEVKSVSWNASGTLLATCG-RDKSVWIWEVMPG 79 (281)
Q Consensus 7 ~~~~~~~~~~~l~tg~~-d~--~--i~lw~~~~~~~-~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~d~~v~~w~~~~~ 79 (281)
...+|+|||+.||..+. +| . +.+|+...+.. .......++.+.....+|+|||+.|+..+ .++...+|.+...
T Consensus 234 ~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~ 313 (428)
T PRK01029 234 LMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQID 313 (428)
T ss_pred cceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECc
Confidence 45689999988775542 33 2 33355443211 11111222223445789999999877655 4666666654321
Q ss_pred CeeEEeEeecCCccceeEEEecCCCCeEEEEecC---CeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCC
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD---NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD 156 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d---~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 156 (281)
........+..+...+....|+|+++.|+..+.+ ..|.+|+++.... ..+.. ....+....|+|+++
T Consensus 314 ~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~------~~Lt~----~~~~~~~p~wSpDG~ 383 (428)
T PRK01029 314 PEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD------YQLTT----SPENKESPSWAIDSL 383 (428)
T ss_pred ccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe------EEccC----CCCCccceEECCCCC
Confidence 1101123333444456788999999988766543 3688888765421 11211 122355688999998
Q ss_pred EEEEe-eCC--CcEEEEeCC
Q 023500 157 KLVSC-SDD--LTIKIWGAD 173 (281)
Q Consensus 157 ~l~s~-~~d--~~i~~w~~~ 173 (281)
.|+.. ... ..|.+++++
T Consensus 384 ~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 384 HLVYSAGNSNESELYLISLI 403 (428)
T ss_pred EEEEEECCCCCceEEEEECC
Confidence 77643 333 345555554
No 269
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.91 E-value=3.2e-06 Score=70.39 Aligned_cols=143 Identities=15% Similarity=0.183 Sum_probs=85.4
Q ss_pred EEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeE
Q 023500 18 LATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKM 97 (281)
Q Consensus 18 l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~ 97 (281)
+++-..++.+.+.|..+.+ .+..+......-..+.|+|||++++.++.|+.|.++|+...+. +..+.. ......
T Consensus 9 ~V~~~~~~~v~viD~~t~~--~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~---v~~i~~-G~~~~~ 82 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNK--VVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV---VATIKV-GGNPRG 82 (369)
T ss_dssp EEEEGGGTEEEEEETTT-S--EEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE---EEEEE--SSEEEE
T ss_pred EEEecCCCEEEEEECCCCe--EEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccE---EEEEec-CCCcce
Confidence 3566678999999977654 3566654333334578999999999999999999999987663 333332 234678
Q ss_pred EEecCCCCeEEEEe-cCCeEEEEeCCCCCCCCceeeeeeee---ccCCccccEEEEEEccCCCEEEEeeC-CCcEEEEe
Q 023500 98 VQWHPTMDVLFSCS-YDNTIKVWWAEDTDSDNWHCVQTISE---SNNGHSSTIWALSFNAKGDKLVSCSD-DLTIKIWG 171 (281)
Q Consensus 98 v~~~p~~~~l~s~s-~d~~v~~w~~~~~~~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~l~s~~~-d~~i~~w~ 171 (281)
++++|++++++++. ..+.+.++|.++.+ .+..+.. .......++.++-.+|....++..-. .+.|-+-|
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle-----~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd 156 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDAETLE-----PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD 156 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEETTT-------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred EEEcCCCCEEEEEecCCCceeEecccccc-----ceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence 99999999887655 67899999876542 2222221 11113345667766777665554444 35554444
No 270
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.86 E-value=1.5e-08 Score=55.19 Aligned_cols=38 Identities=37% Similarity=0.776 Sum_probs=35.5
Q ss_pred EEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEe
Q 023500 83 ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWW 120 (281)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~ 120 (281)
+++.++.+|...|++++|+|+++++++++.|++|++|+
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46778899999999999999999999999999999995
No 271
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.86 E-value=1.2e-05 Score=64.04 Aligned_cols=244 Identities=13% Similarity=0.123 Sum_probs=141.5
Q ss_pred CCcEEEEecCCC--ceeeeeeecCCCCCeeEEEEcCCCCEEEEecC---CCcEEEEEecCC-CeeEEeEeecCCccceeE
Q 023500 24 DATTCIWEDVGG--DYECVATLEGHENEVKSVSWNASGTLLATCGR---DKSVWIWEVMPG-NEFECVSVLQGHAQDVKM 97 (281)
Q Consensus 24 d~~i~lw~~~~~--~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~---d~~v~~w~~~~~-~~~~~~~~~~~~~~~v~~ 97 (281)
+..|..|+..+. +...+. +-.+.+..+-++|+|+++.|.++-. ++.|-.+.+... .....+.........-+-
T Consensus 15 s~gI~v~~ld~~~g~l~~~~-~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~y 93 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQ-LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCY 93 (346)
T ss_pred CCceEEEEEeCcccccchhh-hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeE
Confidence 567999987633 222222 2346678889999999998887754 577888888643 222222221212223378
Q ss_pred EEecCCCCeEEEEecC-CeEEEEeCCCCCCCCceeeeeeeecc-CCc----cccEEEEEEccCCCEEEEeeC-CCcEEEE
Q 023500 98 VQWHPTMDVLFSCSYD-NTIKVWWAEDTDSDNWHCVQTISESN-NGH----SSTIWALSFNAKGDKLVSCSD-DLTIKIW 170 (281)
Q Consensus 98 v~~~p~~~~l~s~s~d-~~v~~w~~~~~~~~~~~~~~~~~~~~-~~h----~~~v~~~~~~~~~~~l~s~~~-d~~i~~w 170 (281)
+++++++++++++... +.|.++.+..... .+..+..+.... ..| ...+....|.|++++|++++. .-.|.+|
T Consensus 94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~-l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y 172 (346)
T COG2706 94 VSVDEDGRFVFVANYHSGSVSVYPLQADGS-LQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY 172 (346)
T ss_pred EEECCCCCEEEEEEccCceEEEEEcccCCc-cccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence 9999999999888876 6888987754211 111111111111 112 112778899999999988863 2258889
Q ss_pred eCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce--eeecCCCCcEEEEecccCC-CcCCccceeeeeeccCCC
Q 023500 171 GADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI--IASGAADDSVQFFVESKDD-LIDGPSYKMLLKKEKAHD 247 (281)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~ 247 (281)
+.+.+....... . .+ -...-.+.|.|+|++. ++..--++++.+|...... ..........+...-...
T Consensus 173 ~~~dg~L~~~~~------~-~v--~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~ 243 (346)
T COG2706 173 DLDDGKLTPADP------A-EV--KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGT 243 (346)
T ss_pred EcccCccccccc------c-cc--CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCC
Confidence 876433221110 0 01 1234457788899874 4456678888888665421 000000011111122234
Q ss_pred CCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 248 MDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 248 ~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
....+|..+|+|+++++|--....|-+|.+.
T Consensus 244 ~~~aaIhis~dGrFLYasNRg~dsI~~f~V~ 274 (346)
T COG2706 244 NWAAAIHISPDGRFLYASNRGHDSIAVFSVD 274 (346)
T ss_pred CceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 4567788999998887776555667676653
No 272
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.79 E-value=3.6e-05 Score=72.55 Aligned_cols=263 Identities=14% Similarity=0.145 Sum_probs=143.4
Q ss_pred EEEEcCC-CCEEEEeeCCCcEEEEecCCCceeeeeeecCCC------------CCeeEEEEcCCCCEEEE-ecCCCcEEE
Q 023500 8 SCAWSPS-GKLLATASFDATTCIWEDVGGDYECVATLEGHE------------NEVKSVSWNASGTLLAT-CGRDKSVWI 73 (281)
Q Consensus 8 ~~~~~~~-~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~------------~~v~~v~~~~~~~~l~s-~~~d~~v~~ 73 (281)
.++++++ ++++++-...+.|.++|..+........ .+.. ..-..++++++++.|+. -...+.|+.
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~-~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGS-TGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEcc-CCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 5788874 6677777778889999875432111111 0111 12367889998876544 445678888
Q ss_pred EEecCCCeeEEeEeecC----------C-------ccceeEEEecC-CCCeEEEEecCCeEEEEeCCCCCCCCceeeee-
Q 023500 74 WEVMPGNEFECVSVLQG----------H-------AQDVKMVQWHP-TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQT- 134 (281)
Q Consensus 74 w~~~~~~~~~~~~~~~~----------~-------~~~v~~v~~~p-~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~- 134 (281)
+|+..+. +.++.+ . -..-..++++| ++.++++.+.++.|++|+....... ....
T Consensus 651 id~~~~~----V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~---~~~G~ 723 (1057)
T PLN02919 651 IDFVNET----VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR---VFSGD 723 (1057)
T ss_pred EecCCCE----EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE---EEecC
Confidence 8875432 111111 0 01124789999 5667788888899999987543110 0000
Q ss_pred -eeeccC------CccccEEEEEEccCCCE-EEEeeCCCcEEEEeCCccccccCCCCcc-c-ceeEEee---c----ccC
Q 023500 135 -ISESNN------GHSSTIWALSFNAKGDK-LVSCSDDLTIKIWGADITRMQSGDGYAS-W-RHLCTIS---G----YHD 197 (281)
Q Consensus 135 -~~~~~~------~h~~~v~~~~~~~~~~~-l~s~~~d~~i~~w~~~~~~~~~~~~~~~-~-~~~~~~~---~----~~~ 197 (281)
...... ..-..+..++++|+++. +++-..++.|++||.+........+... . .....+. + ..-
T Consensus 724 G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l 803 (1057)
T PLN02919 724 GYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLL 803 (1057)
T ss_pred CccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhc
Confidence 000000 11234678999999884 4555567899999976432110000000 0 0000000 0 001
Q ss_pred cceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCcccee-ee---eeccCCCCCeeEEEEcCCCCeeEEEeCCCCeE
Q 023500 198 RTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKM-LL---KKEKAHDMDVNSVQWSPGERRLLASASDDGMI 272 (281)
Q Consensus 198 ~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v 272 (281)
.....+.++++| ++++-..++.+++|+.............. -. ....+.-.....++++++|. ++++.+.++.|
T Consensus 804 ~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVaDt~Nn~I 882 (1057)
T PLN02919 804 QHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVADTNNSLI 882 (1057)
T ss_pred cCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEEECCCCEE
Confidence 123466777766 56777788899999765321110000000 00 00011223567899999875 78888889999
Q ss_pred EEEEccc
Q 023500 273 KIWELAN 279 (281)
Q Consensus 273 ~iw~~~~ 279 (281)
++||+..
T Consensus 883 rvid~~~ 889 (1057)
T PLN02919 883 RYLDLNK 889 (1057)
T ss_pred EEEECCC
Confidence 9999864
No 273
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.78 E-value=1.6e-06 Score=66.13 Aligned_cols=149 Identities=13% Similarity=0.096 Sum_probs=102.4
Q ss_pred EEEeeCCCcEEEEecCCCceeeeeeecCCCC--CeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccce
Q 023500 18 LATASFDATTCIWEDVGGDYECVATLEGHEN--EVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDV 95 (281)
Q Consensus 18 l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~--~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v 95 (281)
+..++.|+++++.+...+..... -|.. .++.+.++|+++++++.|+...|..+.+....++-....+..-.+.-
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~----~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~g 206 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFA----VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHG 206 (344)
T ss_pred eeeccCCcceeEEEEecCcccce----eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCc
Confidence 45678888888887655432211 1332 37889999999999999999999999997665432221222334445
Q ss_pred eEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCC--CEEEEeeCCCcEEEEeCC
Q 023500 96 KMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG--DKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 96 ~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~~~d~~i~~w~~~ 173 (281)
.+..|+.....+|++..||++.|||+..... ...........|.+.+..+.|++-| ++|...-.=+.+.+.|++
T Consensus 207 F~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~t----pm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R 282 (344)
T KOG4532|consen 207 FYNSFSENDLQFAVVFQDGTCAIYDVRNMAT----PMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTR 282 (344)
T ss_pred eeeeeccCcceEEEEecCCcEEEEEeccccc----chhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcc
Confidence 7889999999999999999999999976532 1122222233588899999999754 344444445567787775
Q ss_pred c
Q 023500 174 I 174 (281)
Q Consensus 174 ~ 174 (281)
.
T Consensus 283 ~ 283 (344)
T KOG4532|consen 283 N 283 (344)
T ss_pred c
Confidence 4
No 274
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=6.3e-06 Score=69.03 Aligned_cols=140 Identities=16% Similarity=0.301 Sum_probs=86.6
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC-----------CcEEEEE
Q 023500 7 RSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD-----------KSVWIWE 75 (281)
Q Consensus 7 ~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d-----------~~v~~w~ 75 (281)
+.+.|||-|.||+|=-.- .|.||-- .++..++.+. |. .|.-+.|||..++|+|-|.. ..+.+||
T Consensus 214 tyv~wSP~GTYL~t~Hk~-GI~lWGG--~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQ-GIALWGG--ESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeEEecCCceEEEEEecc-ceeeecC--ccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 568899999999886544 4889942 2233344443 54 47889999999999986632 5889999
Q ss_pred ecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCC
Q 023500 76 VMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG 155 (281)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 155 (281)
+.++.....-.++.+....---..|+.++.++|--.. .+|.|++..+-.. .....-....|....|+|.+
T Consensus 289 I~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~l---------ld~Kslki~gIr~FswsP~~ 358 (698)
T KOG2314|consen 289 IATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFML---------LDKKSLKISGIRDFSWSPTS 358 (698)
T ss_pred ccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceee---------ecccccCCccccCcccCCCc
Confidence 9988643322222333333345689999888875444 7788885543211 11111112345566677766
Q ss_pred CEEEEe
Q 023500 156 DKLVSC 161 (281)
Q Consensus 156 ~~l~s~ 161 (281)
..||--
T Consensus 359 ~llAYw 364 (698)
T KOG2314|consen 359 NLLAYW 364 (698)
T ss_pred ceEEEE
Confidence 555543
No 275
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.76 E-value=3.4e-08 Score=77.55 Aligned_cols=120 Identities=14% Similarity=0.170 Sum_probs=92.4
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCC---ceeeeeeecCCCCCeeEEEEcC-CCCEEEEecCCCcEEEEEecCC
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGG---DYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~---~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~ 79 (281)
..|.++.|...++++..|+-.|.|...|.... ...+.+.+. |+..|+++..-. ++.+|++++.+|+|++||++..
T Consensus 253 sDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~ 331 (425)
T KOG2695|consen 253 SDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT 331 (425)
T ss_pred hhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhh
Confidence 45777888888999999999999999997432 334455554 999999998866 7889999999999999999765
Q ss_pred CeeEEeEeecCCccceeEEE--ecCCCCeEEEEecCCeEEEEeCCCC
Q 023500 80 NEFECVSVLQGHAQDVKMVQ--WHPTMDVLFSCSYDNTIKVWWAEDT 124 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~--~~p~~~~l~s~s~d~~v~~w~~~~~ 124 (281)
+-...+..+.+|...-.-+. .+|....+++++.|...++|.+.+.
T Consensus 332 K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g 378 (425)
T KOG2695|consen 332 KCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG 378 (425)
T ss_pred hcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccC
Confidence 44344778888854333332 3456678999999999999976654
No 276
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.76 E-value=3.7e-06 Score=64.27 Aligned_cols=175 Identities=13% Similarity=0.030 Sum_probs=113.9
Q ss_pred CEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCC-CCEEEEecCCCcEEEEEecCCCeeEEeEeecCCcc-
Q 023500 16 KLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQ- 93 (281)
Q Consensus 16 ~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~- 93 (281)
.+||.|+.-|...+|...+++. ..+....|...|.-+.=..+ ...+..++.|.++++.++..+..... -|..
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~-h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~-----~h~~~ 158 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDG-HLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFA-----VHNQN 158 (344)
T ss_pred cEEEeccccceeeeecccCccc-ceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccce-----eeccc
Confidence 4889999999999998876542 34444445544433322222 23477888999999999865432211 2333
Q ss_pred -ceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeC
Q 023500 94 -DVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA 172 (281)
Q Consensus 94 -~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~ 172 (281)
.+.++.++|++.+.++.+....|..|.+.+... ........ .....=.+..|+.....+|++..||++.|||+
T Consensus 159 ~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~se---y~~~~~~a---~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DV 232 (344)
T KOG4532|consen 159 LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESE---YIENIYEA---PTSDHGFYNSFSENDLQFAVVFQDGTCAIYDV 232 (344)
T ss_pred cceeeeEEcCCCceEEEecCCCcceEEEeCCccc---eeeeeEec---ccCCCceeeeeccCcceEEEEecCCcEEEEEe
Confidence 378899999999999999999999998765421 11121111 12233467889998899999999999999998
Q ss_pred CccccccCCCCcccceeEEeecccCcceEEEEeCCCc
Q 023500 173 DITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG 209 (281)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 209 (281)
+.-...... .......|.+.+..+.|++.|
T Consensus 233 R~~~tpm~~-------~sstrp~hnGa~R~c~Fsl~g 262 (344)
T KOG4532|consen 233 RNMATPMAE-------ISSTRPHHNGAFRVCRFSLYG 262 (344)
T ss_pred cccccchhh-------hcccCCCCCCceEEEEecCCC
Confidence 632211110 111112377888888888755
No 277
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.76 E-value=4.7e-07 Score=72.49 Aligned_cols=160 Identities=13% Similarity=0.179 Sum_probs=97.9
Q ss_pred eEEEEcCCCCEEEEecCCCcEEEEEecCCCe-eEEe--EeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCC
Q 023500 51 KSVSWNASGTLLATCGRDKSVWIWEVMPGNE-FECV--SVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSD 127 (281)
Q Consensus 51 ~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~-~~~~--~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~ 127 (281)
..+..+|.+++++.+-.+....+++.....+ .+.. .........++.+...-.....-.++....+.+|.+..
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~---- 141 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS---- 141 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccc----
Confidence 4445677788888777777666666543332 1111 11111222233333333322333444555666664332
Q ss_pred CceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC
Q 023500 128 NWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR 207 (281)
Q Consensus 128 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 207 (281)
+.+. ..-||-..+..++|+||+++++++.+|..|++-... .. -.+..+.-.|..-|..++..+
T Consensus 142 -~~~~-----~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~yp----a~-------f~IesfclGH~eFVS~isl~~ 204 (390)
T KOG3914|consen 142 -GRCE-----PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYP----AT-------FVIESFCLGHKEFVSTISLTD 204 (390)
T ss_pred -cCcc-----hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecC----cc-------cchhhhccccHhheeeeeecc
Confidence 1111 223899999999999999999999999999984221 00 011122224777788888888
Q ss_pred CceeeecCCCCcEEEEecccCCCc
Q 023500 208 EGIIASGAADDSVQFFVESKDDLI 231 (281)
Q Consensus 208 ~~~~~~~~~d~~~~~~~~~~~~~~ 231 (281)
+..+++++.|+++++|+...+...
T Consensus 205 ~~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 205 NYLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred CceeeecCCCCcEEEEecccCCcc
Confidence 888999999999999988765443
No 278
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.74 E-value=3.4e-07 Score=69.43 Aligned_cols=148 Identities=15% Similarity=0.273 Sum_probs=88.7
Q ss_pred CCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecC-----CCcEEEEEecCCCeeEEeEee
Q 023500 14 SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR-----DKSVWIWEVMPGNEFECVSVL 88 (281)
Q Consensus 14 ~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-----d~~v~~w~~~~~~~~~~~~~~ 88 (281)
.++.+++++.||.+.+++... .+........-.....+.+.-..+..+.+++. -+..+.|++++.......
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~-~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~--- 175 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDK-DLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPS--- 175 (319)
T ss_pred cCCceEecCCCceEEEEechH-HHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccc---
Confidence 457889999999999987543 11111111100111112222233455555432 123455655433221110
Q ss_pred cCCccceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEcc-CCCEEEEeeCCCc
Q 023500 89 QGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA-KGDKLVSCSDDLT 166 (281)
Q Consensus 89 ~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~ 166 (281)
..-...|.+++-||..+ +++.|+.||.+-+||.....+ . .....+|.+.++.+-|+| +++.|++|++||.
T Consensus 176 ~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~-----p---~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGs 247 (319)
T KOG4714|consen 176 KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM-----P---VSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGS 247 (319)
T ss_pred ccccccchhhhCCcccccEEEEecCCCeEEEEEcccccc-----h---HHHHHHhhhhhhheeccCCCchheeEecCCCc
Confidence 01123488999999765 567888899999998765421 1 112247899999999998 4679999999999
Q ss_pred EEEEeCC
Q 023500 167 IKIWGAD 173 (281)
Q Consensus 167 i~~w~~~ 173 (281)
+-.||..
T Consensus 248 lw~wdas 254 (319)
T KOG4714|consen 248 LWHWDAS 254 (319)
T ss_pred EEEEcCC
Confidence 9999764
No 279
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.72 E-value=1.2e-07 Score=81.45 Aligned_cols=212 Identities=17% Similarity=0.346 Sum_probs=136.3
Q ss_pred CccceeEEEEcCCC-CEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC
Q 023500 2 HTRTVRSCAWSPSG-KLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 2 h~~~i~~~~~~~~~-~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
|.+.|+.+.|+|+. ..+|+++.|..+..||...... ++............|+|+.-...+.+.+..+.|++||++.+.
T Consensus 113 hsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~-p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs 191 (1081)
T KOG0309|consen 113 HSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR-PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGS 191 (1081)
T ss_pred CccceeccccCCCCCcceeeccccccceeeeccCCCc-ceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCC
Confidence 67889999999965 5899999999999999865543 355555556667889998844444555666889999998776
Q ss_pred eeEEeEeecCCccceeEEEecCC-CCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPT-MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV 159 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~-~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 159 (281)
. ++..+++|...|+.+.|+.. ...+.+++.|++|+.|+.+.......+.+ ....+++.-+|-|-++-..
T Consensus 192 ~--pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v--------tt~~piw~~r~~Pfg~g~~ 261 (1081)
T KOG0309|consen 192 T--PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV--------TTNFPIWRGRYLPFGEGYC 261 (1081)
T ss_pred c--ceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceec--------cccCcceeccccccCceeE
Confidence 4 45677889888999888764 33688999999999998776533222111 1234567677777554222
Q ss_pred E--eeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeC-----------CCceeeecCCCCcEEEEecc
Q 023500 160 S--CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS-----------REGIIASGAADDSVQFFVES 226 (281)
Q Consensus 160 s--~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----------~~~~~~~~~~d~~~~~~~~~ 226 (281)
+ --.+.++-+++-+...... ......+++..+.+ |+..|..+.|- .+..+++=+.|..+++|-+.
T Consensus 262 ~mp~~G~n~v~~~~c~n~d~e~-n~~~~~~pVh~F~G-H~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 262 IMPMVGGNMVPQLRCENSDLEW-NVFDLNTPVHTFVG-HDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred eccccCCeeeeeccccchhhhh-ccccCCcceeeecC-cchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 2 1112233333222110000 00112245566654 66666554442 13468889999999999654
No 280
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.71 E-value=1.6e-06 Score=73.23 Aligned_cols=137 Identities=14% Similarity=0.152 Sum_probs=86.4
Q ss_pred EEEEecCCCceeeeeeecCCCCCeeEEEEcC-CCCEEEE----ecCCCcEE----EEEecCCCeeEEeEeec-CCcccee
Q 023500 27 TCIWEDVGGDYECVATLEGHENEVKSVSWNA-SGTLLAT----CGRDKSVW----IWEVMPGNEFECVSVLQ-GHAQDVK 96 (281)
Q Consensus 27 i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s----~~~d~~v~----~w~~~~~~~~~~~~~~~-~~~~~v~ 96 (281)
+.++.....+.+.+..+..-..+ .++.||- ++..+.| .+.++.+. +|++...+ .+++.+.. .....+.
T Consensus 186 l~L~~~~~~klEvL~yirTE~dP-l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~k-lqrvsvtsipL~s~v~ 263 (545)
T PF11768_consen 186 LHLLSCSGGKLEVLSYIRTENDP-LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNK-LQRVSVTSIPLPSQVI 263 (545)
T ss_pred EEEEEecCCcEEEEEEEEecCCc-EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCc-eeEEEEEEEecCCcce
Confidence 34443333343333333322233 5777876 4555544 34445433 34443322 23332222 3566799
Q ss_pred EEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccc
Q 023500 97 MVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 176 (281)
Q Consensus 97 ~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~ 176 (281)
|++++|+...++.|+.||+|.+||....- .... ...-.++.++|||+|..+++|+.-|.+.+||+.+..
T Consensus 264 ~ca~sp~E~kLvlGC~DgSiiLyD~~~~~-------t~~~----ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 264 CCARSPSEDKLVLGCEDGSIILYDTTRGV-------TLLA----KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEecCcccceEEEEecCCeEEEEEcCCCe-------eeee----eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 99999999999999999999999875431 1111 122346789999999999999999999999987654
No 281
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.71 E-value=1e-07 Score=79.46 Aligned_cols=176 Identities=14% Similarity=0.314 Sum_probs=113.5
Q ss_pred eeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC----eeEEeEeecCCccceeEEEecCCCCeEEEEecCCe
Q 023500 40 VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN----EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNT 115 (281)
Q Consensus 40 ~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~----~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~ 115 (281)
+..+.||...|..++--.+.+-+++++.|++|++|.+++.. ...|..++++|...|..+.|-.+..++++ .|+.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCc
Confidence 45678999999888665566779999999999999998642 23477889999999999999888777766 7999
Q ss_pred EEEEeCCCCCCCCceeeeeee-eccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeec
Q 023500 116 IKVWWAEDTDSDNWHCVQTIS-ESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISG 194 (281)
Q Consensus 116 v~~w~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 194 (281)
|.+||.=... .+.+.. .+..+....|.|+.--...-.++.|+...+++++|.+...... +|+ .|..+
T Consensus 806 iHlWDPFigr-----~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~-----E~k-Vcna~- 873 (1034)
T KOG4190|consen 806 IHLWDPFIGR-----LLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTC-----ELK-VCNAP- 873 (1034)
T ss_pred ceeecccccc-----hhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccccccee-----eEE-eccCC-
Confidence 9999753221 011111 1112223445554321222245556889999999876432210 011 11111
Q ss_pred ccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCC
Q 023500 195 YHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDD 229 (281)
Q Consensus 195 ~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~ 229 (281)
..+..+.++..-+.| .++++-++|.+...+.+.+.
T Consensus 874 ~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~ 909 (1034)
T KOG4190|consen 874 GPNALTRAIAVADKGNKLAAALSNGCIAILDARNGK 909 (1034)
T ss_pred CCchheeEEEeccCcchhhHHhcCCcEEEEecCCCc
Confidence 234567777777665 46667788888887665543
No 282
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.69 E-value=8.3e-08 Score=80.04 Aligned_cols=169 Identities=21% Similarity=0.373 Sum_probs=111.3
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCC-----CceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVG-----GDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEV 76 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~-----~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~ 76 (281)
|+..|+.++--.+.+-+++++.|.++++|.... +...|..+++.|+.+|.++.|-.+-+.++++ |+-|.+||-
T Consensus 734 H~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDP 811 (1034)
T KOG4190|consen 734 HQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDP 811 (1034)
T ss_pred cHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecc
Confidence 455566554333455678999999999998532 2233677889999999999998887777765 678999996
Q ss_pred cCCCeeEEeEeecCC--ccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC
Q 023500 77 MPGNEFECVSVLQGH--AQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK 154 (281)
Q Consensus 77 ~~~~~~~~~~~~~~~--~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 154 (281)
..++....+.--..| ...|.|+.=-...-+++.++...+||++|...- .|.+..++... .+..+.+.+++..+.
T Consensus 812 Figr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsc---e~~~E~kVcna-~~Pna~~R~iaVa~~ 887 (1034)
T KOG4190|consen 812 FIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSC---EWTCELKVCNA-PGPNALTRAIAVADK 887 (1034)
T ss_pred cccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccc---cceeeEEeccC-CCCchheeEEEeccC
Confidence 555432111111112 223344321111224455588899999976543 35444443321 234567889999999
Q ss_pred CCEEEEeeCCCcEEEEeCCccc
Q 023500 155 GDKLVSCSDDLTIKIWGADITR 176 (281)
Q Consensus 155 ~~~l~s~~~d~~i~~w~~~~~~ 176 (281)
|..++.+-..|+|.+.|.+.++
T Consensus 888 GN~lAa~LSnGci~~LDaR~G~ 909 (1034)
T KOG4190|consen 888 GNKLAAALSNGCIAILDARNGK 909 (1034)
T ss_pred cchhhHHhcCCcEEEEecCCCc
Confidence 9999999999999999887554
No 283
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.65 E-value=0.00013 Score=60.41 Aligned_cols=116 Identities=16% Similarity=0.241 Sum_probs=92.7
Q ss_pred CccceeEEEEcCCCCEEEEeeCCC-cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDA-TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~-~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
|...|....+..+++-++.|..|| .+-|||..+++ ++.+++.-+.|.+++.+|+|++++.+.....+.+.|+.+++
T Consensus 358 ~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e---~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 358 KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE---VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred CCCceEEEEEccCCcceEEeccCCceEEEEecCCce---EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 345577778888888889999999 89999987764 45667777899999999999999999999999999998876
Q ss_pred eeEEeEeecCCccceeEEEecCCCCeEEEEecCC----eEEEEeCCC
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN----TIKVWWAED 123 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~----~v~~w~~~~ 123 (281)
.. ..-+....-|+...|||++..+|-+=-+| .|+++|++.
T Consensus 435 v~---~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 435 VR---LIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred ee---EecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 42 22334456789999999999988665555 788998765
No 284
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.65 E-value=2.3e-06 Score=73.76 Aligned_cols=248 Identities=17% Similarity=0.283 Sum_probs=147.4
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|+..|..+.|+.+.+-|-|...+|.|.+|-...+++-.--.=.-.+..|.+++|+.+|..|...-.||.|.|=.+...+.
T Consensus 70 H~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI 149 (1189)
T KOG2041|consen 70 HNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI 149 (1189)
T ss_pred CcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee
Confidence 78899999999999999999999999999877765421111123456788999999999998888888877665543221
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCC--CceeeeeeeeccCCccccEEEEEEc-------
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSD--NWHCVQTISESNNGHSSTIWALSFN------- 152 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~--~~~~~~~~~~~~~~h~~~v~~~~~~------- 152 (281)
+. ..+++. ....+.|+|+...++.+-..|.+.++|.+..-.. ...|.....-.....+..+..+.|.
T Consensus 150 wg--KeLkg~--~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v 225 (1189)
T KOG2041|consen 150 WG--KELKGQ--LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPV 225 (1189)
T ss_pred cc--hhcchh--eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccC
Confidence 11 111221 2346789999998888888899999976543111 0111111111111112234455553
Q ss_pred -cCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeee-cCCCC---------cEE
Q 023500 153 -AKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIAS-GAADD---------SVQ 221 (281)
Q Consensus 153 -~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~d~---------~~~ 221 (281)
|+...|+.|-..|.+++.-... +. .+.... ..-.+....|+++|-+++ ++.+. .+.
T Consensus 226 ~pdrP~lavcy~nGr~QiMR~eN------D~----~Pvv~d---tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~ 292 (1189)
T KOG2041|consen 226 PPDRPRLAVCYANGRMQIMRSEN------DP----EPVVVD---TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVH 292 (1189)
T ss_pred CCCCCEEEEEEcCceehhhhhcC------CC----CCeEEe---cccEeecceecCCCcEEEEccCcccccCccccceEE
Confidence 4667899999999988762211 00 111111 123456678888875444 33332 222
Q ss_pred EEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 222 FFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
+|. ++...+...+.-...|++++|-..|-+ ++ -+-|+.|.+=+++
T Consensus 293 Fys----------p~G~i~gtlkvpg~~It~lsWEg~gLr-iA-~AvdsfiyfanIR 337 (1189)
T KOG2041|consen 293 FYS----------PYGHIVGTLKVPGSCITGLSWEGTGLR-IA-IAVDSFIYFANIR 337 (1189)
T ss_pred Eec----------cchhheEEEecCCceeeeeEEcCCceE-EE-EEecceEEEEeec
Confidence 221 111223334445677999999866543 33 3347777765554
No 285
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.65 E-value=6.5e-07 Score=69.69 Aligned_cols=226 Identities=18% Similarity=0.330 Sum_probs=130.3
Q ss_pred CCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC--eeEEeEeecCC------------ccceeEEEecCCCC--eEEEE
Q 023500 47 ENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN--EFECVSVLQGH------------AQDVKMVQWHPTMD--VLFSC 110 (281)
Q Consensus 47 ~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~--~~~~~~~~~~~------------~~~v~~v~~~p~~~--~l~s~ 110 (281)
.+.|+++.|...|.++++|...|.|.++.=.... ++.....+++| ...|..+.|..+.+ .++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4678999999999999999999999988632211 11112223333 34677888876543 56777
Q ss_pred ecCCeEEEEeCCCCCC----------------C----Cce--------------eeeeeeeccCCccccEEEEEEccCCC
Q 023500 111 SYDNTIKVWWAEDTDS----------------D----NWH--------------CVQTISESNNGHSSTIWALSFNAKGD 156 (281)
Q Consensus 111 s~d~~v~~w~~~~~~~----------------~----~~~--------------~~~~~~~~~~~h~~~v~~~~~~~~~~ 156 (281)
+.|.+|++|.+..... . +.+ +.........+|+-.++++.|+.+.+
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 8899999998754310 0 000 00000011246888899999999988
Q ss_pred EEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC--ceeeecCCCCcEEEEecccCCCcCCc
Q 023500 157 KLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE--GIIASGAADDSVQFFVESKDDLIDGP 234 (281)
Q Consensus 157 ~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~ 234 (281)
.++++ .|-.|.+|+++....... ....++.. +. -....|++..|+|. ..++=.++.|.+.+-+.+...+.+.+
T Consensus 186 t~lSa-DdLrINLWnl~i~D~sFn--IVDiKP~n-me-eLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 186 TLLSA-DDLRINLWNLEIIDGSFN--IVDIKPHN-ME-ELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred eeeec-cceeeeeccccccCCceE--EEeccCcc-HH-HHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence 77765 577899997754321100 00000000 00 01234566677774 35666677889998877643332222
Q ss_pred cc--eeee-----eeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 235 SY--KMLL-----KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 235 ~~--~~~~-----~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
.. .... ....+-.+.|..+.|++.|+ ++++-. =-+|+|||+..
T Consensus 261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngr-yIlsRd-yltvkiwDvnm 310 (460)
T COG5170 261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGR-YILSRD-YLTVKIWDVNM 310 (460)
T ss_pred hhhhhhccCcccchhHHHHhhhhcceEEcCCCc-EEEEec-cceEEEEeccc
Confidence 11 0000 00111234577899999876 454433 36799999864
No 286
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.63 E-value=1.5e-05 Score=61.58 Aligned_cols=164 Identities=16% Similarity=0.291 Sum_probs=101.0
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecC-------CCCCeeEEEEcCC------CCEEEEecCCCcEEE
Q 023500 7 RSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEG-------HENEVKSVSWNAS------GTLLATCGRDKSVWI 73 (281)
Q Consensus 7 ~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~-------h~~~v~~v~~~~~------~~~l~s~~~d~~v~~ 73 (281)
+.++|+||+.+||.+...|+|++||..+.. +..+.+ -...|..+.|-+. ...|+.-..+|.++-
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~---lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSE---LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEecccce---eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 468999999999999999999999976542 112211 2245666667432 124666667777777
Q ss_pred EEecCC--CeeEEe--EeecCC-ccceeEEEecCCCCeEEEEec-CC----------eEEEEeCCCCC----------CC
Q 023500 74 WEVMPG--NEFECV--SVLQGH-AQDVKMVQWHPTMDVLFSCSY-DN----------TIKVWWAEDTD----------SD 127 (281)
Q Consensus 74 w~~~~~--~~~~~~--~~~~~~-~~~v~~v~~~p~~~~l~s~s~-d~----------~v~~w~~~~~~----------~~ 127 (281)
+-+..+ +.++.. ..+..| ...|+++.++|..++|+.|+. .. -+..|.+-+.. ..
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~ 203 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDD 203 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcc
Confidence 765332 222222 223333 567999999999987665543 22 24456543210 00
Q ss_pred C-----ceeeeeee-----eccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 023500 128 N-----WHCVQTIS-----ESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 128 ~-----~~~~~~~~-----~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~ 173 (281)
. ......+. .....-...|..+..||+++.|++...+|.|.+|++-
T Consensus 204 ~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iP 259 (282)
T PF15492_consen 204 ITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIP 259 (282)
T ss_pred ccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecC
Confidence 0 00111110 0011224668899999999999999999999999864
No 287
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.63 E-value=1e-05 Score=76.16 Aligned_cols=163 Identities=14% Similarity=0.142 Sum_probs=105.9
Q ss_pred eEEEEcC-CCCEEEEeeCCCcEEEEecCCCceeeee------eecCCC------CCeeEEEEcCCCC-EEEEecCCCcEE
Q 023500 7 RSCAWSP-SGKLLATASFDATTCIWEDVGGDYECVA------TLEGHE------NEVKSVSWNASGT-LLATCGRDKSVW 72 (281)
Q Consensus 7 ~~~~~~~-~~~~l~tg~~d~~i~lw~~~~~~~~~~~------~~~~h~------~~v~~v~~~~~~~-~l~s~~~d~~v~ 72 (281)
+.++|+| ++.++++...++.|.+|+..++...... ...++. ..-..++++|++. ++++.+.++.|+
T Consensus 686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Ir 765 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIR 765 (1057)
T ss_pred eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEE
Confidence 4689999 5677788888899999987665322110 001111 1235689999988 456667789999
Q ss_pred EEEecCCCeeEEeE----------eecCC--------ccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeee
Q 023500 73 IWEVMPGNEFECVS----------VLQGH--------AQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQT 134 (281)
Q Consensus 73 ~w~~~~~~~~~~~~----------~~~~~--------~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~ 134 (281)
+||+..+....... .+..+ -..-..+++.|+++++++-+.++.|++|+.+... +.+
T Consensus 766 v~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~------v~t 839 (1057)
T PLN02919 766 ALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKR------VTT 839 (1057)
T ss_pred EEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCe------EEE
Confidence 99987543211000 00000 0123578899999999999999999999876432 111
Q ss_pred eee----------ccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCcc
Q 023500 135 ISE----------SNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADIT 175 (281)
Q Consensus 135 ~~~----------~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~ 175 (281)
+.. ...++-..+..++++++++.+++-+.++.|++||.+.+
T Consensus 840 iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 840 LAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred EeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 110 00122235678999999998888889999999998644
No 288
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.58 E-value=6.9e-05 Score=68.49 Aligned_cols=200 Identities=14% Similarity=0.218 Sum_probs=120.8
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEe--cC--C
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEV--MP--G 79 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~--~~--~ 79 (281)
+.|..+.|..++.-++.+..+|.|.+-|+.+...+++... ...|.+.+||||+..++-...++++.+-+- .. .
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~v---d~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E 145 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNV---DNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAE 145 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeec---cCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence 4688888998888888888999999988888777666554 478999999999998877766666654432 00 0
Q ss_pred Cee--------EEeE--------eecC---------------------CccceeEEEecCCCCeEEE-----EecCCeEE
Q 023500 80 NEF--------ECVS--------VLQG---------------------HAQDVKMVQWHPTMDVLFS-----CSYDNTIK 117 (281)
Q Consensus 80 ~~~--------~~~~--------~~~~---------------------~~~~v~~v~~~p~~~~l~s-----~s~d~~v~ 117 (281)
+.. +.+. .+.+ ..+.=++|.|-.++++++. .....+++
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir 225 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR 225 (1265)
T ss_pred cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence 000 0000 0110 1112245889999998876 33337999
Q ss_pred EEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee---CCCcEEEEeCCccccccCCCCcccceeEEeec
Q 023500 118 VWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS---DDLTIKIWGADITRMQSGDGYASWRHLCTISG 194 (281)
Q Consensus 118 ~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~---~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 194 (281)
+|+-+..- ..... .....=.+++|-|.|..+++-. .|+.|.+|..+..... .....-
T Consensus 226 V~drEg~L-------ns~se---~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg----------~f~l~~ 285 (1265)
T KOG1920|consen 226 VYDREGAL-------NSTSE---PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHG----------EFVLPF 285 (1265)
T ss_pred Eecccchh-------hcccC---cccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccc----------ccccCC
Confidence 99765211 11111 1112235799999998888753 4567888854321110 000000
Q ss_pred -ccCcceEEEEeCCCceeeec----CCCCcEEEEecc
Q 023500 195 -YHDRTIFSVHWSREGIIASG----AADDSVQFFVES 226 (281)
Q Consensus 195 -~~~~~v~~~~~~~~~~~~~~----~~d~~~~~~~~~ 226 (281)
....++..++|..++-++++ ..+..+++|..+
T Consensus 286 p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~ 322 (1265)
T KOG1920|consen 286 PLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTG 322 (1265)
T ss_pred cccccchheeeecCCCCceeeeecccccceEEEEEec
Confidence 12233778899887654443 344458999553
No 289
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.53 E-value=5.9e-07 Score=68.14 Aligned_cols=73 Identities=23% Similarity=0.465 Sum_probs=61.3
Q ss_pred cceeEEEEcCCC-CEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcC-CCCEEEEecCCCcEEEEEec
Q 023500 4 RTVRSCAWSPSG-KLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVM 77 (281)
Q Consensus 4 ~~i~~~~~~~~~-~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~~w~~~ 77 (281)
+.|.+++-+|.. .++++|+.||.+-|||...... ++..++.|+.+++-+-|+| ++..|++++.||.+..||-.
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~-p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM-PVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccc-hHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 347888889954 5778899999999999866542 4667789999999999999 78999999999999999863
No 290
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.51 E-value=1.4e-06 Score=73.49 Aligned_cols=113 Identities=16% Similarity=0.216 Sum_probs=79.2
Q ss_pred eEEEEcCCC-CEEEEe----eCCCc----EEEEecCCCceeeeeee-cCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEe
Q 023500 7 RSCAWSPSG-KLLATA----SFDAT----TCIWEDVGGDYECVATL-EGHENEVKSVSWNASGTLLATCGRDKSVWIWEV 76 (281)
Q Consensus 7 ~~~~~~~~~-~~l~tg----~~d~~----i~lw~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~ 76 (281)
.++.|+... ..+.|. +.+|. -++|+...++...+... -.....|.|++++|+...++.|+.||+|.+||.
T Consensus 209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~ 288 (545)
T PF11768_consen 209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDT 288 (545)
T ss_pred EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEc
Confidence 456676633 333222 23443 35677766555444322 246788999999999999999999999999998
Q ss_pred cCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCC
Q 023500 77 MPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDT 124 (281)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~ 124 (281)
..+-. ......=..+.++|||++..++.|+..|.+.+||+.-.
T Consensus 289 ~~~~t-----~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 289 TRGVT-----LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred CCCee-----eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 64422 11122234588999999999999999999999998644
No 291
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.50 E-value=1.9e-06 Score=68.00 Aligned_cols=148 Identities=20% Similarity=0.235 Sum_probs=99.4
Q ss_pred EEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCc
Q 023500 63 ATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGH 142 (281)
Q Consensus 63 ~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h 142 (281)
++.|.+-.|.+-++..+.. ..+. ..+.|.+++|+..+++++.|+..|.|...|+.....+...+...+. |
T Consensus 228 fs~G~sqqv~L~nvetg~~----qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-----h 297 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ----QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-----H 297 (425)
T ss_pred ecccccceeEEEEeecccc----cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-----c
Confidence 5556666777777654431 1222 3567888999999999999999999999999776555444555553 7
Q ss_pred cccEEEEEEcc-CCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCc---ceEEEEeCCCceeeecCCCC
Q 023500 143 SSTIWALSFNA-KGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDR---TIFSVHWSREGIIASGAADD 218 (281)
Q Consensus 143 ~~~v~~~~~~~-~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~d~ 218 (281)
...|+++..-. ++.+|++.+.+|+|++||.+..+.. ..+.++.+ |-. .+...--..+|.+++++.|-
T Consensus 298 ~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~--------~~V~qYeG-HvN~~a~l~~~v~~eeg~I~s~GdDc 368 (425)
T KOG2695|consen 298 DSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCK--------KSVMQYEG-HVNLSAYLPAHVKEEEGSIFSVGDDC 368 (425)
T ss_pred CcchhhhhhhccccceEeeccCcCceeEeeehhhhcc--------cceeeeec-ccccccccccccccccceEEEccCee
Confidence 78888887766 6778999999999999998754431 11112221 111 11111112367899999999
Q ss_pred cEEEEecccCC
Q 023500 219 SVQFFVESKDD 229 (281)
Q Consensus 219 ~~~~~~~~~~~ 229 (281)
..|+|....+-
T Consensus 369 ytRiWsl~~gh 379 (425)
T KOG2695|consen 369 YTRIWSLDSGH 379 (425)
T ss_pred EEEEEecccCc
Confidence 99999876543
No 292
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=5.7e-06 Score=69.19 Aligned_cols=112 Identities=22% Similarity=0.468 Sum_probs=83.1
Q ss_pred ccceeEEEEcCCCCEEEEe--eCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC---CcEEEEEec
Q 023500 3 TRTVRSCAWSPSGKLLATA--SFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD---KSVWIWEVM 77 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg--~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---~~v~~w~~~ 77 (281)
.++|.++.|+|+|+-++.+ -+=-.+.|||.... ++..+. .++=+++-|+|.|++|+.+|.+ |.+-+||+.
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~---~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~ 344 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK---PVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVP 344 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCCCC---EeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEecc
Confidence 4789999999999876543 34468899987553 344443 5777899999999999888765 689999997
Q ss_pred CCCeeEEeEeecCCccceeEEEecCCCCeEEEEec------CCeEEEEeCCCC
Q 023500 78 PGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY------DNTIKVWWAEDT 124 (281)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~------d~~v~~w~~~~~ 124 (281)
+. +++..+. ....+-..|+|+|.++++++. |+.++||+....
T Consensus 345 n~---K~i~~~~--a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 345 NR---KLIAKFK--AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred ch---hhccccc--cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 53 2344443 345677899999999988775 578889976543
No 293
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.43 E-value=3.3e-07 Score=77.77 Aligned_cols=205 Identities=14% Similarity=0.204 Sum_probs=122.5
Q ss_pred ceeEEEEcC--CCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcC-CCCEEEEec----CCCcEEEEEec
Q 023500 5 TVRSCAWSP--SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA-SGTLLATCG----RDKSVWIWEVM 77 (281)
Q Consensus 5 ~i~~~~~~~--~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~----~d~~v~~w~~~ 77 (281)
.+.|++++- +..+++.|..+|.|.+-.....-........+|....++++|++ |...||+|- .|-.+++||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 456666554 33589999999999887543222121223456888999999999 566677663 24589999997
Q ss_pred CC--CeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEcc-C
Q 023500 78 PG--NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA-K 154 (281)
Q Consensus 78 ~~--~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~ 154 (281)
.. .+++...-..+--....+++|-.+..++++|.....+.++|+...... .. .-.+..+..+..+| .
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~----~~------svnTk~vqG~tVdp~~ 207 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDS----VS------SVNTKYVQGITVDPFS 207 (783)
T ss_pred cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhh----hh------hhhhhhcccceecCCC
Confidence 55 221111101112334568888888889999999999999877632110 00 11234456677777 6
Q ss_pred CCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC--CceeeecCCC-CcEEEEecc
Q 023500 155 GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR--EGIIASGAAD-DSVQFFVES 226 (281)
Q Consensus 155 ~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~d-~~~~~~~~~ 226 (281)
+.++++-. ||.+.+||.. .+.. ..+ ..+..-.......+..++|.| .|.+++...| +.++++++.
T Consensus 208 ~nY~cs~~-dg~iAiwD~~-rnie--npl---~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 208 PNYFCSNS-DGDIAIWDTY-RNIE--NPL---QIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CCceeccc-cCceeeccch-hhhc--cHH---HHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 66787655 8999999942 1110 000 000000000122466777776 5777777765 577888654
No 294
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=4e-05 Score=64.33 Aligned_cols=145 Identities=19% Similarity=0.354 Sum_probs=93.9
Q ss_pred EEEcCCCC-E--EEEeeCCC---------cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEE--ecCCCcEEEE
Q 023500 9 CAWSPSGK-L--LATASFDA---------TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLAT--CGRDKSVWIW 74 (281)
Q Consensus 9 ~~~~~~~~-~--l~tg~~d~---------~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s--~~~d~~v~~w 74 (281)
..|++-|+ + |++..-|. ++.+.+..+. .+...+. -.++|.++.|+|+|+.++. |-+=-.+.++
T Consensus 223 m~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~--s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtif 299 (566)
T KOG2315|consen 223 MKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE--SVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIF 299 (566)
T ss_pred EEeccCCceEEEEEEEeecCCCccccccceEEEEEecCc--eEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEE
Confidence 45777665 3 33444443 3445444422 2233332 4689999999999987654 3445578888
Q ss_pred EecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecC---CeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEE
Q 023500 75 EVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD---NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF 151 (281)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d---~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 151 (281)
|+.-. .+..+ ....=+++-|+|.+++++.++.+ |.+-+||+... +++..+.. ...+-.+|
T Consensus 300 nlr~~----~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~-----K~i~~~~a------~~tt~~eW 362 (566)
T KOG2315|consen 300 NLRGK----PVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR-----KLIAKFKA------ANTTVFEW 362 (566)
T ss_pred cCCCC----EeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccch-----hhcccccc------CCceEEEE
Confidence 87522 23333 23445788999999999888876 58999988753 23333321 22345799
Q ss_pred ccCCCEEEEeeC------CCcEEEEeCC
Q 023500 152 NAKGDKLVSCSD------DLTIKIWGAD 173 (281)
Q Consensus 152 ~~~~~~l~s~~~------d~~i~~w~~~ 173 (281)
+|||++++|+.. |..++||+..
T Consensus 363 ~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 363 SPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred cCCCcEEEEEeccccEEecCCeEEEEec
Confidence 999999999874 5678899865
No 295
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.40 E-value=0.00021 Score=60.22 Aligned_cols=249 Identities=19% Similarity=0.295 Sum_probs=133.9
Q ss_pred cceeEEEEcCCCCEEEEeeC-----------CCcEEEEecCCCceeeeeeecC--CCCCee-EEEEcCCCCEEEEecCCC
Q 023500 4 RTVRSCAWSPSGKLLATASF-----------DATTCIWEDVGGDYECVATLEG--HENEVK-SVSWNASGTLLATCGRDK 69 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~-----------d~~i~lw~~~~~~~~~~~~~~~--h~~~v~-~v~~~~~~~~l~s~~~d~ 69 (281)
..|..+.|||.-+||+|=+. ...|+|||..++.. ...+.. -...++ -+.||.|+.++|-... .
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~l--krsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~ 326 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLL--KRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-N 326 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccch--hcceeccCCCccccceEEeccCCceeEEecc-c
Confidence 45788999999999998652 25799999988753 233332 122333 3589999999987766 5
Q ss_pred cEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecC--C---eEEEEeCCCC-------------------C
Q 023500 70 SVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD--N---TIKVWWAEDT-------------------D 125 (281)
Q Consensus 70 ~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d--~---~v~~w~~~~~-------------------~ 125 (281)
+|-+++.......+ .+.+ .-+.|....|+|.+++||--+.. . .+-+-.+.+. .
T Consensus 327 sisIyEtpsf~lld-~Ksl--ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk 403 (698)
T KOG2314|consen 327 SISIYETPSFMLLD-KKSL--KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQK 403 (698)
T ss_pred eEEEEecCceeeec-cccc--CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEecc
Confidence 68888764322111 1111 23457778899987776532211 0 1112111110 0
Q ss_pred CCCceeeeeeeecc------------------------CCccccEEEEEEccCCCEEEEee---CCCcEEEEeCCccccc
Q 023500 126 SDNWHCVQTISESN------------------------NGHSSTIWALSFNAKGDKLVSCS---DDLTIKIWGADITRMQ 178 (281)
Q Consensus 126 ~~~~~~~~~~~~~~------------------------~~h~~~v~~~~~~~~~~~l~s~~---~d~~i~~w~~~~~~~~ 178 (281)
++.+-|+..-.... ..-...|...+|-|.|+.+++-+ ...++.+|.++..
T Consensus 404 ~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~--- 480 (698)
T KOG2314|consen 404 SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETN--- 480 (698)
T ss_pred CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecC---
Confidence 11111111000000 01135577788889888766544 2347777865421
Q ss_pred cCCCCcccceeEEeecccCcceEEEEeCCCcee----eecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEE
Q 023500 179 SGDGYASWRHLCTISGYHDRTIFSVHWSREGII----ASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQ 254 (281)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 254 (281)
...++.+.. ........+.|+|.|.+ +.++..+.+.+++..-.+... .....|. .-+.+.
T Consensus 481 ----~~~~~lVk~---~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~--------~~~~eh~-~at~ve 544 (698)
T KOG2314|consen 481 ----IKKPSLVKE---LDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKD--------TASPEHF-AATEVE 544 (698)
T ss_pred ----CCchhhhhh---hcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhh--------ccCcccc-ccccce
Confidence 011111111 12234467889998842 234467888998764321111 1112332 356789
Q ss_pred EcCCCCeeEEEeCC------CCeEEEEEcc
Q 023500 255 WSPGERRLLASASD------DGMIKIWELA 278 (281)
Q Consensus 255 ~~~~~~~~~~s~~~------Dg~v~iw~~~ 278 (281)
|.|.|++ +++++. |..-+||.+.
T Consensus 545 WDPtGRY-vvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 545 WDPTGRY-VVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred ECCCCCE-EEEeeehhhhccccceEEEEee
Confidence 9999875 455543 4445666654
No 296
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.39 E-value=0.0005 Score=58.50 Aligned_cols=141 Identities=11% Similarity=0.073 Sum_probs=81.8
Q ss_pred ceeEEEEcCCCCE-EEEeeCC---CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEE-EecCCC--cEEEEEec
Q 023500 5 TVRSCAWSPSGKL-LATASFD---ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLA-TCGRDK--SVWIWEVM 77 (281)
Q Consensus 5 ~i~~~~~~~~~~~-l~tg~~d---~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~--~v~~w~~~ 77 (281)
.+..-.|+|||+. ++..+.. ..|.++|..+++...+.. ..+......|+|||+.|+ +.+.++ .|.++++.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~---~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~ 265 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS---SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN 265 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec---CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECC
Confidence 3456789999984 6644443 467788887776554443 345566778999998765 444444 56666664
Q ss_pred CCCeeEEeEeecCCccceeEEEecCCCCeEEEEec-CC--eEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC
Q 023500 78 PGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY-DN--TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK 154 (281)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~-d~--~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 154 (281)
.+. .. .+..+........|+|+++.++-.+. .+ .|.+.+++... .+.+.. .+. ....|+|+
T Consensus 266 ~g~-~~---~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~------~~rlt~--~g~----~~~~~SPD 329 (419)
T PRK04043 266 TKT-LT---QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS------VEQVVF--HGK----NNSSVSTY 329 (419)
T ss_pred CCc-EE---EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC------eEeCcc--CCC----cCceECCC
Confidence 443 22 22333322345689999987665553 34 45555554332 111211 111 12489999
Q ss_pred CCEEEEeeCC
Q 023500 155 GDKLVSCSDD 164 (281)
Q Consensus 155 ~~~l~s~~~d 164 (281)
++.++-....
T Consensus 330 G~~Ia~~~~~ 339 (419)
T PRK04043 330 KNYIVYSSRE 339 (419)
T ss_pred CCEEEEEEcC
Confidence 9987766543
No 297
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.00011 Score=64.85 Aligned_cols=196 Identities=11% Similarity=0.176 Sum_probs=120.5
Q ss_pred EEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCC-eeEEEEcCCCCEEEEecCCCc-----EEEEEecCC--Ce
Q 023500 10 AWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENE-VKSVSWNASGTLLATCGRDKS-----VWIWEVMPG--NE 81 (281)
Q Consensus 10 ~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~-v~~v~~~~~~~~l~s~~~d~~-----v~~w~~~~~--~~ 81 (281)
.|++.+..+|.|++||.|.+.+ ..+.....++++... |..+..-....+|++-+.|+. +++|++..- +.
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln---~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN---SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred EEcCCCceEEEeeccccEEEec---ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 4788999999999999998875 334455777777777 433333333467888777654 899998643 12
Q ss_pred -eEEe---Eeec----CCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEcc
Q 023500 82 -FECV---SVLQ----GHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA 153 (281)
Q Consensus 82 -~~~~---~~~~----~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 153 (281)
++++ +.+. ....++.+++.+.+-+.++.|=.+|.|.++.-+-.+....+. ... ..-..+|+.+.+..
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~--~~~---~~~~~pITgL~~~~ 181 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQ--DYS---HRGKEPITGLALRS 181 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccce--eee---ccCCCCceeeEEec
Confidence 3444 2221 134578899999998899999999999988433221111111 111 11257899999988
Q ss_pred CCCE-EEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce-eeecCCCCcEEEEecc
Q 023500 154 KGDK-LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVES 226 (281)
Q Consensus 154 ~~~~-l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~~~~~~~~ 226 (281)
++.. +.... ...|.+|.+..+.+ ..+. ...+..++.|..+++... ++. +...-+.+|+..
T Consensus 182 d~~s~lFv~T-t~~V~~y~l~gr~p----------~~~~-ld~~G~~lnCss~~~~t~qfIc-a~~e~l~fY~sd 243 (933)
T KOG2114|consen 182 DGKSVLFVAT-TEQVMLYSLSGRTP----------SLKV-LDNNGISLNCSSFSDGTYQFIC-AGSEFLYFYDSD 243 (933)
T ss_pred CCceeEEEEe-cceeEEEEecCCCc----------ceee-eccCCccceeeecCCCCccEEE-ecCceEEEEcCC
Confidence 8775 33333 44588887752211 0111 123556677777766544 333 334457777554
No 298
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=2e-05 Score=68.92 Aligned_cols=189 Identities=17% Similarity=0.225 Sum_probs=117.1
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeE
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE 83 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~ 83 (281)
+.+.|++++ +++|+-|..+|.+.+++..... .+...|... ..+|.+++|||.||+|.+-.+-++++.
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~----~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~- 106 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP----KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEI- 106 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCcc----ccccccccc------ccCCceEEEecCCCcEEEeeccCCccc-
Confidence 455666665 6799999999999999765432 222224333 558999999999999999988766542
Q ss_pred EeEeecCCccceeEEEecCC-----CCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEE
Q 023500 84 CVSVLQGHAQDVKMVQWHPT-----MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158 (281)
Q Consensus 84 ~~~~~~~~~~~v~~v~~~p~-----~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 158 (281)
..+. -...+.+++++|+ ...+++|+.-| +.++.-. -.+.+..+ .+. .-.+.|.++.|.. .++
T Consensus 107 --~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~--wlgnk~~v-~l~----~~eG~I~~i~W~g--~lI 173 (846)
T KOG2066|consen 107 --TQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERN--WLGNKDSV-VLS----EGEGPIHSIKWRG--NLI 173 (846)
T ss_pred --eeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhh--hhcCccce-eee----cCccceEEEEecC--cEE
Confidence 1122 2346899999998 34789999888 6665211 01111111 111 2247899999963 356
Q ss_pred EEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecc
Q 023500 159 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVES 226 (281)
Q Consensus 159 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~ 226 (281)
|=...+| +++||+..+++......+.... ..+.-...+.|.++..++.|-.| ++++..++
T Consensus 174 AWand~G-v~vyd~~~~~~l~~i~~p~~~~------R~e~fpphl~W~~~~~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 174 AWANDDG-VKVYDTPTRQRLTNIPPPSQSV------RPELFPPHLHWQDEDRLVIGWGD-SVKICSIK 233 (846)
T ss_pred EEecCCC-cEEEeccccceeeccCCCCCCC------CcccCCCceEecCCCeEEEecCC-eEEEEEEe
Confidence 5555555 9999987665443322221000 01222345778888777776655 56777665
No 299
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=0.00012 Score=59.23 Aligned_cols=77 Identities=18% Similarity=0.235 Sum_probs=64.2
Q ss_pred CCccceeEEEEcCCCC-EEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCC-CCEEEEecCCCcEEEEEecC
Q 023500 1 MHTRTVRSCAWSPSGK-LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMP 78 (281)
Q Consensus 1 ~h~~~i~~~~~~~~~~-~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~~w~~~~ 78 (281)
+|...|..++|+|..+ ++..++-++.|+|.|..+.. .+..+..| ..+++++|.-+ .++|..|-.+|.|.++|++.
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~--~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC--VVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccce--eeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 3667899999999887 78889999999999988764 35566666 88999999875 46789999999999999986
Q ss_pred CC
Q 023500 79 GN 80 (281)
Q Consensus 79 ~~ 80 (281)
..
T Consensus 268 ~~ 269 (463)
T KOG1645|consen 268 PE 269 (463)
T ss_pred CC
Confidence 54
No 300
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=4.4e-05 Score=66.80 Aligned_cols=145 Identities=14% Similarity=0.161 Sum_probs=89.6
Q ss_pred CCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCC-----CCEEEEecCCCcEEEEEecCCCeeEEeEee
Q 023500 14 SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS-----GTLLATCGRDKSVWIWEVMPGNEFECVSVL 88 (281)
Q Consensus 14 ~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~-----~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~ 88 (281)
+|++++||+.||++.|-...+.+..+... ...++.+|+++|+ .+++++||..| +.+..=.=-+....+ .+
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~d---f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l 156 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYD---FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VL 156 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEe---cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-ee
Confidence 59999999999999998776655433333 5589999999998 56899999988 665531101111111 34
Q ss_pred cCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccC--CccccEEEEEEccCCCEEEEeeCCCc
Q 023500 89 QGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNN--GHSSTIWALSFNAKGDKLVSCSDDLT 166 (281)
Q Consensus 89 ~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~d~~ 166 (281)
....+.|.+++|..+ ++|-++ |--|+++|..... .+..++.+.. ....-...+.|.++.++++..+ .+
T Consensus 157 ~~~eG~I~~i~W~g~--lIAWan-d~Gv~vyd~~~~~-----~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~--d~ 226 (846)
T KOG2066|consen 157 SEGEGPIHSIKWRGN--LIAWAN-DDGVKVYDTPTRQ-----RLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWG--DS 226 (846)
T ss_pred ecCccceEEEEecCc--EEEEec-CCCcEEEeccccc-----eeeccCCCCCCCCcccCCCceEecCCCeEEEecC--Ce
Confidence 455678999999864 566655 4457899876542 1111211110 0011234678877765444333 35
Q ss_pred EEEEeCC
Q 023500 167 IKIWGAD 173 (281)
Q Consensus 167 i~~w~~~ 173 (281)
|++..++
T Consensus 227 v~i~~I~ 233 (846)
T KOG2066|consen 227 VKICSIK 233 (846)
T ss_pred EEEEEEe
Confidence 8888765
No 301
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.31 E-value=0.00044 Score=63.50 Aligned_cols=209 Identities=14% Similarity=0.320 Sum_probs=119.9
Q ss_pred CCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCC----
Q 023500 47 ENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAE---- 122 (281)
Q Consensus 47 ~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~---- 122 (281)
++.|.++.|..++..++.+..+|.|.+-|..... .+.+. .-...|.+.+|+|+.++++-.+.+.++.+-.-.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~-~eivg---~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i 143 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLE-LEIVG---NVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPI 143 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccc-eeeee---eccCceEEEeecCCCcEEEEEeCCcEEEEEeccccch
Confidence 3578899999998888888888999888764332 22222 235679999999999999888888887665321
Q ss_pred -CCCC----C--------Cc-eeeeeeeec--------c----C--C---ccccEEEEEEccCCCEEEEe-----eCCCc
Q 023500 123 -DTDS----D--------NW-HCVQTISES--------N----N--G---HSSTIWALSFNAKGDKLVSC-----SDDLT 166 (281)
Q Consensus 123 -~~~~----~--------~~-~~~~~~~~~--------~----~--~---h~~~v~~~~~~~~~~~l~s~-----~~d~~ 166 (281)
.... . .| +....+.-. . + + ....=..+.|..||+++++. .....
T Consensus 144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 144 AEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred hccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 0000 0 00 000000000 0 0 0 00112358999999998883 23379
Q ss_pred EEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeec----CCCCcEEEEecccCCCcCCccceeeeee
Q 023500 167 IKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASG----AADDSVQFFVESKDDLIDGPSYKMLLKK 242 (281)
Q Consensus 167 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (281)
|++||.+ +..+.... .....-.+++|-|.|.+++. .+|+.+.+|-.++ +..+. +.-.
T Consensus 224 irV~drE-g~Lns~se------------~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNG--L~hg~----f~l~ 284 (1265)
T KOG1920|consen 224 IRVYDRE-GALNSTSE------------PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNG--LRHGE----FVLP 284 (1265)
T ss_pred EEEeccc-chhhcccC------------cccccccceeecCCCCeEeeeeecCCCCcEEEEecCC--ccccc----cccC
Confidence 9999877 32221111 11223345677777654432 2455677774432 22211 1111
Q ss_pred ccCCCCCeeEEEEcCCCCeeEEE---eCCCCeEEEEEccc
Q 023500 243 EKAHDMDVNSVQWSPGERRLLAS---ASDDGMIKIWELAN 279 (281)
Q Consensus 243 ~~~h~~~v~~~~~~~~~~~~~~s---~~~Dg~v~iw~~~~ 279 (281)
...-..++..++|+.++. ++|. +.....|++|=+.|
T Consensus 285 ~p~de~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 285 FPLDEKEVEELAWNSNSD-ILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred CcccccchheeeecCCCC-ceeeeecccccceEEEEEecC
Confidence 122233489999999875 5665 55555699997654
No 302
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=0.00048 Score=61.07 Aligned_cols=201 Identities=19% Similarity=0.264 Sum_probs=118.9
Q ss_pred EcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccc-eeEEEecCCCCeEEEEecCCe-----EEEEeCCCCC-CC
Q 023500 55 WNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQD-VKMVQWHPTMDVLFSCSYDNT-----IKVWWAEDTD-SD 127 (281)
Q Consensus 55 ~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~-v~~v~~~p~~~~l~s~s~d~~-----v~~w~~~~~~-~~ 127 (281)
|++.+..++.|+.+|.|.+.+- ..+....+.++... |..+..--..+.|++.++|.. +++|+++..+ +.
T Consensus 31 ~~s~~~~vvigt~~G~V~~Ln~----s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 31 CSSSTGSVVIGTADGRVVILNS----SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred EcCCCceEEEeeccccEEEecc----cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 5788899999999998866642 22233556666555 343333333468888888864 8999998763 23
Q ss_pred Cceeeeeee--e-ccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEE
Q 023500 128 NWHCVQTIS--E-SNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVH 204 (281)
Q Consensus 128 ~~~~~~~~~--~-~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 204 (281)
+-.|+.... . .....+.++.+++.+.+-..++.|-.+|.|..+.-+.. ...+. + ..+......+|+.+.
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~---RDrgs---r--~~~~~~~~~pITgL~ 178 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDIL---RDRGS---R--QDYSHRGKEPITGLA 178 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcch---hcccc---c--eeeeccCCCCceeeE
Confidence 244552221 1 11223567788999988889999999999998843321 11111 1 112222456777777
Q ss_pred eCCCce--eeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 205 WSREGI--IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 205 ~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
+-.++. +.++ +-..+.+|...... +. ......|...++|.++++....++ +++ +..|.+|+..
T Consensus 179 ~~~d~~s~lFv~-Tt~~V~~y~l~gr~----p~----~~~ld~~G~~lnCss~~~~t~qfI-ca~-~e~l~fY~sd 243 (933)
T KOG2114|consen 179 LRSDGKSVLFVA-TTEQVMLYSLSGRT----PS----LKVLDNNGISLNCSSFSDGTYQFI-CAG-SEFLYFYDSD 243 (933)
T ss_pred EecCCceeEEEE-ecceeEEEEecCCC----cc----eeeeccCCccceeeecCCCCccEE-Eec-CceEEEEcCC
Confidence 665442 2222 33456777665321 11 122345778899999998654444 443 4577787754
No 303
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.20 E-value=0.0016 Score=51.28 Aligned_cols=224 Identities=12% Similarity=0.133 Sum_probs=123.7
Q ss_pred EEEEcC-CCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEc-CCCCEEEEecCCCcEEEEEecCCCeeEEe
Q 023500 8 SCAWSP-SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN-ASGTLLATCGRDKSVWIWEVMPGNEFECV 85 (281)
Q Consensus 8 ~~~~~~-~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~-~~~~~l~s~~~d~~v~~w~~~~~~~~~~~ 85 (281)
...|.+ ++.++.+--..+.|..|+..++... ...+. . ...+.+. +++.++++. .+ .+.++|...+. .+.+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~---~-~~G~~~~~~~g~l~v~~-~~-~~~~~d~~~g~-~~~~ 75 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLP---G-PNGMAFDRPDGRLYVAD-SG-GIAVVDPDTGK-VTVL 75 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-EEESS---S-EEEEEEECTTSEEEEEE-TT-CEEEEETTTTE-EEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-EEecC---C-CceEEEEccCCEEEEEE-cC-ceEEEecCCCc-EEEE
Confidence 467888 7777877777888999998776532 22222 2 5677787 665555554 43 34555876543 2333
Q ss_pred Eee--cC-CccceeEEEecCCCCeEEEEecC--------CeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC
Q 023500 86 SVL--QG-HAQDVKMVQWHPTMDVLFSCSYD--------NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK 154 (281)
Q Consensus 86 ~~~--~~-~~~~v~~v~~~p~~~~l~s~s~d--------~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 154 (281)
... .. .....+.+++.|+++++++.... +.+..++.. .. +..+.. .-...+.++|+|+
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~------~~~~~~----~~~~pNGi~~s~d 144 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK------VTVVAD----GLGFPNGIAFSPD 144 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE------EEEEEE----EESSEEEEEEETT
T ss_pred eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce------EEEEec----CcccccceEECCc
Confidence 332 12 34567899999999988886655 345555433 11 111111 1234678999999
Q ss_pred CCEEE-EeeCCCcEEEEeCCccccccCCCCcccceeEEeecccC--cceEEEEeCCCce-eeecCCCCcEEEEecccCCC
Q 023500 155 GDKLV-SCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHD--RTIFSVHWSREGI-IASGAADDSVQFFVESKDDL 230 (281)
Q Consensus 155 ~~~l~-s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~ 230 (281)
++.|+ +-+..+.|..++.+.... .+.....+..... .....++.+.+|. +++....+.+.+++...
T Consensus 145 g~~lyv~ds~~~~i~~~~~~~~~~-------~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G--- 214 (246)
T PF08450_consen 145 GKTLYVADSFNGRIWRFDLDADGG-------ELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDG--- 214 (246)
T ss_dssp SSEEEEEETTTTEEEEEEEETTTC-------CEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTS---
T ss_pred chheeecccccceeEEEecccccc-------ceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCc---
Confidence 98765 556677777776542110 0011111111111 2355677777664 44444667777776542
Q ss_pred cCCccceeeeeeccCCCCCeeEEEEc-CCCCeeEEEeC
Q 023500 231 IDGPSYKMLLKKEKAHDMDVNSVQWS-PGERRLLASAS 267 (281)
Q Consensus 231 ~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~~~s~~ 267 (281)
..... +. .. ...+++++|. ++...|++|.+
T Consensus 215 ---~~~~~-i~--~p-~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 215 ---KLLRE-IE--LP-VPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp ---CEEEE-EE---S-SSSEEEEEEESTTSSEEEEEEB
T ss_pred ---cEEEE-Ec--CC-CCCEEEEEEECCCCCEEEEEeC
Confidence 11111 11 12 2368999994 55567777764
No 304
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.20 E-value=9.2e-07 Score=75.15 Aligned_cols=208 Identities=14% Similarity=0.212 Sum_probs=124.5
Q ss_pred CCeeEEEEcCCC--CEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCC-eEEEEe----cCCeEEEEe
Q 023500 48 NEVKSVSWNASG--TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD-VLFSCS----YDNTIKVWW 120 (281)
Q Consensus 48 ~~v~~v~~~~~~--~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s----~d~~v~~w~ 120 (281)
..+.|++++.+- ..++.|..+|.|-+-.+..... ....+..+|...+++++|++-.. .|++|- .|..++|||
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd-Ss~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD-SSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCccc-ccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 456788776543 3578889999999988765431 12445678889999999999644 555542 345899999
Q ss_pred CCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcce
Q 023500 121 AEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTI 200 (281)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 200 (281)
+.+.-..+.... .++. +......+++|..+.+++.+|+...++.++|++...- +.....+..+
T Consensus 136 i~s~ltvPke~~-~fs~---~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~-------------~~~svnTk~v 198 (783)
T KOG1008|consen 136 INSLLTVPKESP-LFSS---STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD-------------SVSSVNTKYV 198 (783)
T ss_pred cccccCCCcccc-cccc---ccccCccccccccCcchhhcccccchhhhhhhhhhhh-------------hhhhhhhhhc
Confidence 987522221111 1111 1123345788888888999999998999998752110 0001122233
Q ss_pred EEEEeCC-C-ceeeecCCCCcEEEEec-ccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCC-CeEEEEE
Q 023500 201 FSVHWSR-E-GIIASGAADDSVQFFVE-SKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDD-GMIKIWE 276 (281)
Q Consensus 201 ~~~~~~~-~-~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~D-g~v~iw~ 276 (281)
.-+..+| . +++++ ..|+.+.+|+. ... +.+ ...+......-...+..++|+|....++++...| ++|++++
T Consensus 199 qG~tVdp~~~nY~cs-~~dg~iAiwD~~rni---enp-l~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlyd 273 (783)
T KOG1008|consen 199 QGITVDPFSPNYFCS-NSDGDIAIWDTYRNI---ENP-LQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYD 273 (783)
T ss_pred ccceecCCCCCceec-cccCceeeccchhhh---ccH-HHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEec
Confidence 3333344 2 34444 45889999973 211 111 1111111122223588999999877788888776 5799998
Q ss_pred cc
Q 023500 277 LA 278 (281)
Q Consensus 277 ~~ 278 (281)
+.
T Consensus 274 i~ 275 (783)
T KOG1008|consen 274 IC 275 (783)
T ss_pred cc
Confidence 75
No 305
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.13 E-value=0.00067 Score=56.70 Aligned_cols=235 Identities=16% Similarity=0.280 Sum_probs=128.2
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC---------------C
Q 023500 5 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD---------------K 69 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---------------~ 69 (281)
++..+.|||-|++|++... ..|.+|.-.... . +..+. ...|.-+.|+|.+.+|.+=+.. +
T Consensus 34 p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~~-~-l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n 108 (561)
T COG5354 34 PVAYVSESPLGTYLFSEHA-AGVECWGGPSKA-K-LVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKN 108 (561)
T ss_pred chhheeecCcchheehhhc-cceEEccccchh-h-eeeee--cCCceecccCcccceeeeeccCCccChhhccCCccccC
Confidence 5678899999999987553 458899654333 2 33333 3568899999999999985443 3
Q ss_pred cEEEEEecCCCeeEEeEeecCCccc--ee-EEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccE
Q 023500 70 SVWIWEVMPGNEFECVSVLQGHAQD--VK-MVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTI 146 (281)
Q Consensus 70 ~v~~w~~~~~~~~~~~~~~~~~~~~--v~-~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v 146 (281)
.+.+||+..+.. +..+...... .. -++|+-+..+++=. -...++++++.. +.. ......+ ....+
T Consensus 109 ~~~vwd~~sg~i---v~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~-n~~-~~p~~~l------r~~gi 176 (561)
T COG5354 109 NVFVWDIASGMI---VFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITD-NIE-EHPFKNL------RPVGI 176 (561)
T ss_pred ceeEEeccCcee---EeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCC-ccc-cCchhhc------cccce
Confidence 589999976642 3444333222 33 67888887766543 345678887522 111 0000111 12446
Q ss_pred EEEEEccCC--CEEEE-----eeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceee-----ec
Q 023500 147 WALSFNAKG--DKLVS-----CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIA-----SG 214 (281)
Q Consensus 147 ~~~~~~~~~--~~l~s-----~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----~~ 214 (281)
....|+|.+ ..|+. ...++++++|.+-.... +.+. .+....-+.+.|.+.|..+ +-
T Consensus 177 ~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~-----------l~tk-~lfk~~~~qLkW~~~g~~ll~l~~t~ 244 (561)
T COG5354 177 LDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSV-----------LVTK-NLFKVSGVQLKWQVLGKYLLVLVMTH 244 (561)
T ss_pred eeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCe-----------eeee-eeEeecccEEEEecCCceEEEEEEEe
Confidence 677777764 23433 24567788886542111 1110 0111222345555544211 10
Q ss_pred C-CC------CcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEE-EeCCCCeEEEEEcc
Q 023500 215 A-AD------DSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLA-SASDDGMIKIWELA 278 (281)
Q Consensus 215 ~-~d------~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~-s~~~Dg~v~iw~~~ 278 (281)
. ++ ..++++.....+ +.....-.++|...+|.|.+.++.+ +|--+..+.++|+.
T Consensus 245 ~ksnKsyfgesnLyl~~~~e~~----------i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr 306 (561)
T COG5354 245 TKSNKSYFGESNLYLLRITERS----------IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLR 306 (561)
T ss_pred eecccceeccceEEEEeecccc----------cceeccccccceeeeecccCCceeEEecccccceeecccc
Confidence 0 11 233444333211 1111234678999999998876533 33457777777764
No 306
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.11 E-value=3.9e-05 Score=68.13 Aligned_cols=145 Identities=17% Similarity=0.288 Sum_probs=101.0
Q ss_pred CCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC---------CcEEEEEecCCCeeEE
Q 023500 14 SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD---------KSVWIWEVMPGNEFEC 84 (281)
Q Consensus 14 ~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---------~~v~~w~~~~~~~~~~ 84 (281)
+++++.+|..-|+|.|-|++.. +.++++.+|.+.|.+ |.-.|+.|+++|.. .=|+|||++.-+...+
T Consensus 186 Nnr~lf~G~t~G~V~LrD~~s~--~~iht~~aHs~siSD--fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P 261 (1118)
T KOG1275|consen 186 NNRNLFCGDTRGTVFLRDPNSF--ETIHTFDAHSGSISD--FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP 261 (1118)
T ss_pred cCcEEEeecccceEEeecCCcC--ceeeeeeccccceee--eeccCCeEEEeecccccccccccchhhhhhhhhhhccCC
Confidence 5688999999999999887654 468899999999865 45578999998864 4568899875543333
Q ss_pred eEeecCCccceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeC
Q 023500 85 VSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD 163 (281)
Q Consensus 85 ~~~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 163 (281)
+.. +.. -..++|+|.-. .++.+|..|...+-|.....+... .+.-+. .-...+.+++++++++.|+.|..
T Consensus 262 I~~---~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~-~~~~v~----p~~s~i~~fDiSsn~~alafgd~ 332 (1118)
T KOG1275|consen 262 IQF---PYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPA-GVKMVN----PNGSGISAFDISSNGDALAFGDH 332 (1118)
T ss_pred ccc---ccC-chhhhhcccccceEEEEecccceeeccccccCCCcc-ceeEEc----cCCCcceeEEecCCCceEEEecc
Confidence 221 222 26778899754 577788889888876332211100 011111 11344889999999999999999
Q ss_pred CCcEEEEe
Q 023500 164 DLTIKIWG 171 (281)
Q Consensus 164 d~~i~~w~ 171 (281)
+|.|.+|-
T Consensus 333 ~g~v~~wa 340 (1118)
T KOG1275|consen 333 EGHVNLWA 340 (1118)
T ss_pred cCcEeeec
Confidence 99999995
No 307
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.05 E-value=0.0015 Score=54.45 Aligned_cols=148 Identities=14% Similarity=0.134 Sum_probs=105.1
Q ss_pred EcC-CCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCC-cEEEEEecCCCeeEEeEee
Q 023500 11 WSP-SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDK-SVWIWEVMPGNEFECVSVL 88 (281)
Q Consensus 11 ~~~-~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~-~v~~w~~~~~~~~~~~~~~ 88 (281)
|++ +|+++|..|- |+.-|.+...+.. ..-+|.+.|.-..+..++.-++.|-.|+ .+-++|...+. +..+
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~----iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e----~kr~ 397 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYS----IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE----VKRI 397 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCee----EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce----EEEe
Confidence 444 6788877763 4555655443322 1235788898888888888888888888 88899976543 3344
Q ss_pred cCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCC---
Q 023500 89 QGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDL--- 165 (281)
Q Consensus 89 ~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~--- 165 (281)
.+.-..|..++.+|++..++.+.....+-+.|++... ++.+.+ ...+.++..+|||+++.+|-+-.+|
T Consensus 398 e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn------v~~idk---S~~~lItdf~~~~nsr~iAYafP~gy~t 468 (668)
T COG4946 398 EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN------VRLIDK---SEYGLITDFDWHPNSRWIAYAFPEGYYT 468 (668)
T ss_pred eCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC------eeEecc---cccceeEEEEEcCCceeEEEecCcceee
Confidence 5556789999999999999998887888888887653 121221 2246789999999999998877665
Q ss_pred -cEEEEeCCccc
Q 023500 166 -TIKIWGADITR 176 (281)
Q Consensus 166 -~i~~w~~~~~~ 176 (281)
.|+++|+..++
T Consensus 469 q~Iklydm~~~K 480 (668)
T COG4946 469 QSIKLYDMDGGK 480 (668)
T ss_pred eeEEEEecCCCe
Confidence 68889876433
No 308
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.04 E-value=1.7e-05 Score=42.00 Aligned_cols=37 Identities=32% Similarity=0.677 Sum_probs=32.8
Q ss_pred eeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEE
Q 023500 39 CVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWE 75 (281)
Q Consensus 39 ~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~ 75 (281)
+...+.+|...|.++.|+|.+.++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4556678899999999999999999999999999995
No 309
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.98 E-value=0.0014 Score=55.79 Aligned_cols=138 Identities=7% Similarity=0.050 Sum_probs=76.6
Q ss_pred eeEEEEcCCCCEEE-EeeCC--CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecC-CC--cEEEEEecCC
Q 023500 6 VRSCAWSPSGKLLA-TASFD--ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR-DK--SVWIWEVMPG 79 (281)
Q Consensus 6 i~~~~~~~~~~~l~-tg~~d--~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d~--~v~~w~~~~~ 79 (281)
....+|+|||+.++ +.+.+ ..|.+++..++....+. .+......-.|+|||+.|+-.+. .+ .|.+.++..+
T Consensus 235 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT---~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g 311 (419)
T PRK04043 235 LVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQIT---NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG 311 (419)
T ss_pred EEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcc---cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 44678999998654 44434 35666676666543333 23332334579999987765543 33 5666666544
Q ss_pred CeeEEeEeecCCccceeEEEecCCCCeEEEEecC---------CeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEE
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD---------NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALS 150 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d---------~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 150 (281)
... +.... .. ....|+|++..++..+.. ..|.+.+++... .+.+... + ......
T Consensus 312 ~~~---rlt~~-g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~------~~~LT~~--~---~~~~p~ 374 (419)
T PRK04043 312 SVE---QVVFH-GK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY------IRRLTAN--G---VNQFPR 374 (419)
T ss_pred CeE---eCccC-CC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC------eEECCCC--C---CcCCeE
Confidence 321 11111 11 124899999987765543 255666654432 1222211 1 122468
Q ss_pred EccCCCEEEEeeC
Q 023500 151 FNAKGDKLVSCSD 163 (281)
Q Consensus 151 ~~~~~~~l~s~~~ 163 (281)
|+|+|+.++-...
T Consensus 375 ~SPDG~~I~f~~~ 387 (419)
T PRK04043 375 FSSDGGSIMFIKY 387 (419)
T ss_pred ECCCCCEEEEEEc
Confidence 9999987666554
No 310
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.93 E-value=0.0003 Score=58.70 Aligned_cols=137 Identities=16% Similarity=0.307 Sum_probs=92.7
Q ss_pred ccceeEEEEcCCCCEEEEee--CCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC---CcEEEEEec
Q 023500 3 TRTVRSCAWSPSGKLLATAS--FDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD---KSVWIWEVM 77 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~--~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---~~v~~w~~~ 77 (281)
.++|...+|.|.++.+++.+ .+-.+.++|..++ .... .....=+.+.|+|.+++++.+|-| |.+-+|+..
T Consensus 274 ~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N---l~~~--~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~ 348 (561)
T COG5354 274 KDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN---LRFY--FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPA 348 (561)
T ss_pred cccceeeeecccCCceeEEecccccceeecccccc---eEEe--cCCcccccccccCcccEEEEecCCccccceEEeccC
Confidence 46889999999988776554 6778888887654 2222 233444678899999999998876 588889864
Q ss_pred CCCeeEEeEeecCCccceeEEEecCCCCeEEEEe------cCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEE
Q 023500 78 PGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS------YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF 151 (281)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s------~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 151 (281)
..+.++..+.+ ...+-+.|+|+++.+.+.. .|+.+++|++..... ...+.+.|
T Consensus 349 --~rf~~~~~~~~--~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~-----------------fel~~~~W 407 (561)
T COG5354 349 --GRFKVAGAFNG--LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV-----------------FELTNITW 407 (561)
T ss_pred --CceEEEEEeec--CCceEeeccCCceEEEecCCCcccccCcceEEEEecCchh-----------------hhhhhccc
Confidence 22334434433 3466778999999876643 467899998765421 12345777
Q ss_pred ccCCCEEEEeeCCC
Q 023500 152 NAKGDKLVSCSDDL 165 (281)
Q Consensus 152 ~~~~~~l~s~~~d~ 165 (281)
.|.+++..+.+.+.
T Consensus 408 ~p~~~~~ttsSs~~ 421 (561)
T COG5354 408 DPSGQYVTTSSSCP 421 (561)
T ss_pred cCCcccceeeccCC
Confidence 77776666655544
No 311
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=9e-05 Score=63.33 Aligned_cols=73 Identities=23% Similarity=0.355 Sum_probs=61.9
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCee-EEEEcCCCCEEEEecCCCcEEEEEecCCC
Q 023500 5 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVK-SVSWNASGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~-~v~~~~~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
.|..+.|+|...++|++..+|.+.+...+- ..+.++.-|..++. +++|.|||+.|+.|-.||+|++.|+..+.
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n~---qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLNW---QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEecc---ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 467789999999999999999998887652 33556665777777 99999999999999999999999997664
No 312
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.89 E-value=0.0007 Score=60.20 Aligned_cols=108 Identities=20% Similarity=0.365 Sum_probs=82.0
Q ss_pred EEEEcCCCCEEEEeeC----CCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeE
Q 023500 8 SCAWSPSGKLLATASF----DATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE 83 (281)
Q Consensus 8 ~~~~~~~~~~l~tg~~----d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~ 83 (281)
-+.|+|.-.+||.++- .|++.||-. +++ +-.... ..-.+.++.|+|..-.|+.|=.-|.+.+|..... +
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfad-tGE--Pqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~---e 92 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFAD-TGE--PQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTT---E 92 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEec-CCC--CCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCc---e
Confidence 3569999999988874 478899843 332 111111 3344667999998888888888899999986543 2
Q ss_pred EeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCC
Q 023500 84 CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAE 122 (281)
Q Consensus 84 ~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~ 122 (281)
...+...|..+|..+.|+|+|..++++..=|.|.+|...
T Consensus 93 ~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 93 THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 345567899999999999999999999999999999765
No 313
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.88 E-value=0.00012 Score=63.39 Aligned_cols=119 Identities=14% Similarity=0.125 Sum_probs=89.2
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeE
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE 83 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~ 83 (281)
..|.--+++..+++++.|+.-|.+.+|+..++... .....+-.+.+..+..+++..++|.|++.+.|-++-++...+..
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~-~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR-KLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhh-cccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 34555567888999999999999999988776432 22223344556666789999999999999999999887644333
Q ss_pred EeEee---cCCccceeEEEecCCCCeEEEEecCCeEEEEeCCC
Q 023500 84 CVSVL---QGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAED 123 (281)
Q Consensus 84 ~~~~~---~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~ 123 (281)
..... ..|...|++++|++++..+++|...|+|.+-.++.
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 22222 23678899999999999999999999998776554
No 314
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.85 E-value=0.0086 Score=47.20 Aligned_cols=161 Identities=15% Similarity=0.194 Sum_probs=95.4
Q ss_pred eeEEEEc-CCCCEEEEeeCCCcEEEEecCCCceeeeeeec--C-CCCCeeEEEEcCCCCEEEEecCCCc------EEEEE
Q 023500 6 VRSCAWS-PSGKLLATASFDATTCIWEDVGGDYECVATLE--G-HENEVKSVSWNASGTLLATCGRDKS------VWIWE 75 (281)
Q Consensus 6 i~~~~~~-~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~--~-h~~~v~~v~~~~~~~~l~s~~~d~~------v~~w~ 75 (281)
...+++. ++++++++ ..+ .+.++|..+++...+.... . .....+.+++.|+|++.++...... =.+|.
T Consensus 42 ~~G~~~~~~~g~l~v~-~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVA-DSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSEEEEE-ETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCEEEEE-EcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence 4456677 67666655 444 4566688887766555542 2 3346789999999998887654421 24555
Q ss_pred ecCCCeeEEeEeecCCccceeEEEecCCCCeE-EEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC
Q 023500 76 VMPGNEFECVSVLQGHAQDVKMVQWHPTMDVL-FSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK 154 (281)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l-~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 154 (281)
+........ ....-...+.++|+|+++.| ++-+..+.|..+++...... ......+... ..-...+-.+++..+
T Consensus 120 ~~~~~~~~~---~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~-~~~~~~~~~~-~~~~g~pDG~~vD~~ 194 (246)
T PF08450_consen 120 IDPDGKVTV---VADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGE-LSNRRVFIDF-PGGPGYPDGLAVDSD 194 (246)
T ss_dssp EETTSEEEE---EEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCC-EEEEEEEEE--SSSSCEEEEEEEBTT
T ss_pred ECCCCeEEE---EecCcccccceEECCcchheeecccccceeEEEeccccccc-eeeeeeEEEc-CCCCcCCCcceEcCC
Confidence 544432211 12223446899999999865 56677788888877543210 0011111111 111133667899999
Q ss_pred CCEEEEeeCCCcEEEEeCC
Q 023500 155 GDKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 155 ~~~l~s~~~d~~i~~w~~~ 173 (281)
|.+.++....+.|.+++.+
T Consensus 195 G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 195 GNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp S-EEEEEETTTEEEEEETT
T ss_pred CCEEEEEcCCCEEEEECCC
Confidence 9888877788899999876
No 315
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.00024 Score=58.38 Aligned_cols=173 Identities=13% Similarity=0.091 Sum_probs=108.5
Q ss_pred CccceeEEEEcCCCCEEEEeeC-CCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCC-C--CEEEEecCCCcEEEEEec
Q 023500 2 HTRTVRSCAWSPSGKLLATASF-DATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS-G--TLLATCGRDKSVWIWEVM 77 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~-d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~--~~l~s~~~d~~v~~w~~~ 77 (281)
|...|..++.+-+|.+++|++. |+.++++|...-+......+.--.+.+.++ .+|. . ..-++.-.++.+.++|-.
T Consensus 52 HL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~ 130 (558)
T KOG0882|consen 52 HLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGF 130 (558)
T ss_pred HHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCc
Confidence 3455677888889999999887 999999987654322111111122332222 2232 1 223344567888888854
Q ss_pred CCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCC----CC-CCceee-eeeeeccCCccccEEEEEE
Q 023500 78 PGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDT----DS-DNWHCV-QTISESNNGHSSTIWALSF 151 (281)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~----~~-~~~~~~-~~~~~~~~~h~~~v~~~~~ 151 (281)
.... +....-.-|..+|.++.++|.++..++....|.|..|..+.. +. ..+... .+..-..........++.|
T Consensus 131 ~d~~-q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Ef 209 (558)
T KOG0882|consen 131 GDFC-QDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEF 209 (558)
T ss_pred CCcC-ccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEE
Confidence 3321 112233458899999999999999999999999999976531 00 001000 0000000112345678999
Q ss_pred ccCCCEEEEeeCCCcEEEEeCCccc
Q 023500 152 NAKGDKLVSCSDDLTIKIWGADITR 176 (281)
Q Consensus 152 ~~~~~~l~s~~~d~~i~~w~~~~~~ 176 (281)
+|++..+.+-..|..|+++..+.++
T Consensus 210 sp~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 210 SPDGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred ccccCcccccCcccEEEEEEeccch
Confidence 9999999999999999999877554
No 316
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.73 E-value=0.00011 Score=38.54 Aligned_cols=37 Identities=38% Similarity=0.532 Sum_probs=32.0
Q ss_pred EeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEe
Q 023500 84 CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWW 120 (281)
Q Consensus 84 ~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~ 120 (281)
+...+..|...|.++.|+|.+..+++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3455667888899999999999999999999999983
No 317
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.0038 Score=50.91 Aligned_cols=80 Identities=13% Similarity=0.219 Sum_probs=62.9
Q ss_pred eecCCCCCeeEEEEcCCCC-EEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCC-eEEEEecCCeEEEE
Q 023500 42 TLEGHENEVKSVSWNASGT-LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVW 119 (281)
Q Consensus 42 ~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w 119 (281)
.+-+|...|..++|+|..+ ++..++.++.|++.|+.... +...+..+ ..+.+++|.-+.. +|.+|-..|.|.++
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~---~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlvy 263 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC---VVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVY 263 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccce---eeeheecc-CCceeeeeccCCcceeEEeccCceEEEE
Confidence 3446778899999999765 78899999999999996543 23444555 5689999988754 68888899999999
Q ss_pred eCCCCC
Q 023500 120 WAEDTD 125 (281)
Q Consensus 120 ~~~~~~ 125 (281)
|+....
T Consensus 264 D~R~~~ 269 (463)
T KOG1645|consen 264 DMRQPE 269 (463)
T ss_pred EccCCC
Confidence 987653
No 318
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.63 E-value=0.03 Score=47.21 Aligned_cols=226 Identities=11% Similarity=0.081 Sum_probs=106.7
Q ss_pred CCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccc
Q 023500 15 GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQD 94 (281)
Q Consensus 15 ~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~ 94 (281)
+..++.++.++.+..+|..+++......+. +.+.+.... .+..++.++.++.+..+|..+++..... ......
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~---~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~---~~~~~~ 177 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLS---SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTY---SRVTPA 177 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccC---ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEE---ccCCCc
Confidence 455566677777777777666532222211 222111111 3456677778899999998776532211 111110
Q ss_pred e-----eEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCcc--ccEEEEEEcc--CCCEEEEeeCCC
Q 023500 95 V-----KMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHS--STIWALSFNA--KGDKLVSCSDDL 165 (281)
Q Consensus 95 v-----~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~--~~~~l~s~~~d~ 165 (281)
. .+... .+..++.++.++.+..++.++... .|+. ..... .+.. ..+..+.-+| .+..++.++.+|
T Consensus 178 ~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~-~W~~--~~~~~-~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g 251 (377)
T TIGR03300 178 LTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQP-LWEQ--RVALP-KGRTELERLVDVDGDPVVDGGQVYAVSYQG 251 (377)
T ss_pred eeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCE-eeee--ccccC-CCCCchhhhhccCCccEEECCEEEEEEcCC
Confidence 0 00011 124667778888888888765431 1211 01000 0000 0000000011 245777888899
Q ss_pred cEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeeeeccC
Q 023500 166 TIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKA 245 (281)
Q Consensus 166 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (281)
.+..+|.+.++.. |+.. .. ....+ .. .++.+..+..++.+..++...+.. +......
T Consensus 252 ~l~a~d~~tG~~~-------W~~~--~~-~~~~p----~~-~~~~vyv~~~~G~l~~~d~~tG~~--------~W~~~~~ 308 (377)
T TIGR03300 252 RVAALDLRSGRVL-------WKRD--AS-SYQGP----AV-DDNRLYVTDADGVVVALDRRSGSE--------LWKNDEL 308 (377)
T ss_pred EEEEEECCCCcEE-------Eeec--cC-CccCc----eE-eCCEEEEECCCCeEEEEECCCCcE--------EEccccc
Confidence 9999987654321 1111 00 00011 11 245666667888888886643321 1111000
Q ss_pred CCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 246 HDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 246 h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
........... +. .+..++.||.|.++|...
T Consensus 309 ~~~~~ssp~i~--g~-~l~~~~~~G~l~~~d~~t 339 (377)
T TIGR03300 309 KYRQLTAPAVV--GG-YLVVGDFEGYLHWLSRED 339 (377)
T ss_pred cCCccccCEEE--CC-EEEEEeCCCEEEEEECCC
Confidence 00111111121 33 355778899999988653
No 319
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.62 E-value=0.027 Score=46.54 Aligned_cols=96 Identities=14% Similarity=0.138 Sum_probs=61.7
Q ss_pred CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEec----------CCCcEEEEEecCCCeeEEeEeecC-C--
Q 023500 25 ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCG----------RDKSVWIWEVMPGNEFECVSVLQG-H-- 91 (281)
Q Consensus 25 ~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~----------~d~~v~~w~~~~~~~~~~~~~~~~-~-- 91 (281)
+.+.+.|..+.+. +.++..-..+- .+ ++|||+.|+.+. .+..|.+||....+....+..-.. +
T Consensus 27 ~~v~ViD~~~~~v--~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEAGRV--LGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEECCCCEE--EEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh
Confidence 7899999877653 34443222222 24 899999876654 478999999976654322211000 1
Q ss_pred -ccceeEEEecCCCCeEEEEec--CCeEEEEeCCCC
Q 023500 92 -AQDVKMVQWHPTMDVLFSCSY--DNTIKVWWAEDT 124 (281)
Q Consensus 92 -~~~v~~v~~~p~~~~l~s~s~--d~~v~~w~~~~~ 124 (281)
...-....++|++++++.... +..|-+.|++..
T Consensus 103 ~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~ 138 (352)
T TIGR02658 103 VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGK 138 (352)
T ss_pred ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCC
Confidence 222347789999998887663 579999988764
No 320
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.57 E-value=0.0001 Score=65.61 Aligned_cols=155 Identities=15% Similarity=0.167 Sum_probs=103.7
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC-C-cEEEEEecCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD-K-SVWIWEVMPG 79 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d-~-~v~~w~~~~~ 79 (281)
|+..-+|++|+-+.++|+.|+-.|.|++|+..++.. ....++|..+|+-+.-+-+|..+++.+.- . -..+|++...
T Consensus 1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~--e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~ 1177 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM--EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST 1177 (1516)
T ss_pred cccceeeEEeecCCceEEeeeccceEEEEEccCccc--cccccccccccccccccCCcceeeeeccccCchHHHhccccc
Confidence 445678999999999999999999999999988754 45678999999999888888876665442 2 4568987542
Q ss_pred CeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEE
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV 159 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 159 (281)
. .....+ ..-.+++|+-..+.-+.|.......+||++... ...++.....+....-++..|+|+.++++
T Consensus 1178 ~--~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~-----~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1178 G--GPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCS-----PLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred c--Cccccc----cccceeehhhhHHHHHhcccccceEEEecccCc-----HHHHhcCcchhhhhhccccccCCCcceEe
Confidence 1 222222 345678888775554555555677889887642 12221111112222336788999887664
Q ss_pred EeeCCCcEEEEeCCc
Q 023500 160 SCSDDLTIKIWGADI 174 (281)
Q Consensus 160 s~~~d~~i~~w~~~~ 174 (281)
+||. +||.+.
T Consensus 1247 ---ndGv--LWDvR~ 1256 (1516)
T KOG1832|consen 1247 ---NDGV--LWDVRI 1256 (1516)
T ss_pred ---eCce--eeeecc
Confidence 5663 688753
No 321
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.52 E-value=0.0011 Score=57.74 Aligned_cols=123 Identities=15% Similarity=0.147 Sum_probs=83.5
Q ss_pred CCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCC
Q 023500 47 ENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDS 126 (281)
Q Consensus 47 ~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~ 126 (281)
...|.--+++..+.+++-|+.-|.+.+++=.. +... .....+....+.....|++..+.|+|+..|.|.++.+.....
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~-~~~~-~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHT-GEMR-KLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCc-hhhh-cccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC
Confidence 34455455667789999999999999887422 2211 112222344456678899988999999999999886655321
Q ss_pred CCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCc
Q 023500 127 DNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI 174 (281)
Q Consensus 127 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~ 174 (281)
..-.. +......|...|++++|++++..+++|...|.|..-.++.
T Consensus 111 ~~~~~---~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 111 RDLDY---VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred Cccee---eccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 11111 1112234788999999999999999999999988765543
No 322
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.50 E-value=0.0051 Score=55.35 Aligned_cols=182 Identities=16% Similarity=0.248 Sum_probs=102.6
Q ss_pred CEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeecc
Q 023500 60 TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESN 139 (281)
Q Consensus 60 ~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~ 139 (281)
..++-||--..+...|+....+... ..+. .+.|.- ...++..+++|...|+|.+-|..+- +.+.++
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~-~~v~--a~~v~i--mR~Nnr~lf~G~t~G~V~LrD~~s~-----~~iht~---- 213 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRT-TNVS--ASGVTI--MRYNNRNLFCGDTRGTVFLRDPNSF-----ETIHTF---- 213 (1118)
T ss_pred cceeecchhhheeeeecccceeeee-eecc--CCceEE--EEecCcEEEeecccceEEeecCCcC-----ceeeee----
Confidence 4455565555666677765443211 1111 112322 2345678999999999999865432 233333
Q ss_pred CCccccEEEEEEccCCCEEEEeeC---------CCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC--C
Q 023500 140 NGHSSTIWALSFNAKGDKLVSCSD---------DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR--E 208 (281)
Q Consensus 140 ~~h~~~v~~~~~~~~~~~l~s~~~---------d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~ 208 (281)
.+|.+.+. +|+-.|..|++|+. |..|++||+++-+......+ +..+ .-+.+.| .
T Consensus 214 ~aHs~siS--DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~------------~~~P-~flrf~Psl~ 278 (1118)
T KOG1275|consen 214 DAHSGSIS--DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF------------PYGP-QFLRFHPSLT 278 (1118)
T ss_pred ecccccee--eeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCccc------------ccCc-hhhhhccccc
Confidence 47888885 55567789999984 56778888764321111110 1111 1122233 3
Q ss_pred ceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 209 GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 209 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
..++.++.-|..++.+...- ..+.....+. ......+.+..+++.+. .++-+..+|.|.+|.
T Consensus 279 t~~~V~S~sGq~q~vd~~~l---sNP~~~~~~v--~p~~s~i~~fDiSsn~~-alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 279 TRLAVTSQSGQFQFVDTATL---SNPPAGVKMV--NPNGSGISAFDISSNGD-ALAFGDHEGHVNLWA 340 (1118)
T ss_pred ceEEEEecccceeecccccc---CCCccceeEE--ccCCCcceeEEecCCCc-eEEEecccCcEeeec
Confidence 35666666677777653211 1121112221 22344588899999764 688899999999997
No 323
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.47 E-value=0.00033 Score=62.20 Aligned_cols=107 Identities=23% Similarity=0.322 Sum_probs=75.2
Q ss_pred EEEcCCCCEEEEecC----CCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCC
Q 023500 53 VSWNASGTLLATCGR----DKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDN 128 (281)
Q Consensus 53 v~~~~~~~~l~s~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~ 128 (281)
.+|+|...+++.++- .|+|.++-=. +.+ + ..+. ..-.+++++|||..-+|+.|.+-|.+.+|......
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfadt-GEP-q-r~Vt--~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e--- 92 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFADT-GEP-Q-RDVT--YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE--- 92 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEecC-CCC-C-cccc--cceehhhhccChHHHHHhhccccceeEEEecCCce---
Confidence 467887777766542 4677776322 211 1 1111 11125679999999899999999999999655432
Q ss_pred ceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 023500 129 WHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 129 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~ 173 (281)
..+ ....|+.++..++||++|..|+++.+-|.+.+|..+
T Consensus 93 ---~ht---v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 93 ---THT---VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ---eee---eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 112 234689999999999999999999999999999654
No 324
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.44 E-value=0.066 Score=47.79 Aligned_cols=151 Identities=17% Similarity=0.346 Sum_probs=96.7
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCC------------CEEEEecCCCcEE
Q 023500 5 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG------------TLLATCGRDKSVW 72 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~------------~~l~s~~~d~~v~ 72 (281)
.-.++.|+|.| ++|-|+. ..|.+-|..+- +.+..++-|...|+.+.|.|-. .+|+++.-.|.|.
T Consensus 17 N~~A~Dw~~~G-LiAygsh-slV~VVDs~s~--q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSH-SLVSVVDSRSL--QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred cccccccCccc-eEEEecC-ceEEEEehhhh--hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 34567888876 4555552 35666665543 3467788899999999997631 2567777889999
Q ss_pred EEEecCCCeeEEeEeecCCccceeEEEecCC---C-CeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEE
Q 023500 73 IWEVMPGNEFECVSVLQGHAQDVKMVQWHPT---M-DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWA 148 (281)
Q Consensus 73 ~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~---~-~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 148 (281)
+||..... .+.-+..|.+.+..++|-|. . ..+++-..-.++.+|+..++. .-| +...+ .....|
T Consensus 93 l~d~~~~s---~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~-k~W-------k~~ys-~~iLs~ 160 (1062)
T KOG1912|consen 93 LVDFVLAS---VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGE-KFW-------KYDYS-HEILSC 160 (1062)
T ss_pred EEEehhhh---hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCc-eee-------ccccC-Ccceee
Confidence 99986443 23345667777888887663 3 466776777899999665542 111 11112 244566
Q ss_pred EEEcc-CCCEEEEeeCCCcEEEEe
Q 023500 149 LSFNA-KGDKLVSCSDDLTIKIWG 171 (281)
Q Consensus 149 ~~~~~-~~~~l~s~~~d~~i~~w~ 171 (281)
+.+.| |.+.+..-+..|.+-+-+
T Consensus 161 f~~DPfd~rh~~~l~s~g~vl~~~ 184 (1062)
T KOG1912|consen 161 FRVDPFDSRHFCVLGSKGFVLSCK 184 (1062)
T ss_pred eeeCCCCcceEEEEccCceEEEEe
Confidence 77777 445665556666665554
No 325
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.34 E-value=0.02 Score=50.89 Aligned_cols=115 Identities=15% Similarity=0.237 Sum_probs=76.4
Q ss_pred CccceeEEEEcCCC------------CEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcC---CC-CEEEEe
Q 023500 2 HTRTVRSCAWSPSG------------KLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA---SG-TLLATC 65 (281)
Q Consensus 2 h~~~i~~~~~~~~~------------~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~-~~l~s~ 65 (281)
|+..|+.+.|.|-. -+||++.-.|.|.|||...... +..++.|.+++..+.|-| +. ..|+.-
T Consensus 54 h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~--~~~l~~~~~~~qdl~W~~~rd~Srd~LlaI 131 (1062)
T KOG1912|consen 54 HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASV--INWLSHSNDSVQDLCWVPARDDSRDVLLAI 131 (1062)
T ss_pred CccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhh--hhhhcCCCcchhheeeeeccCcchheeEEe
Confidence 67889999998842 2567777779999999866543 345677889999999865 34 356655
Q ss_pred cCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCC-CeEEEEecCCeEEEEeC
Q 023500 66 GRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTM-DVLFSCSYDNTIKVWWA 121 (281)
Q Consensus 66 ~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~-~~l~s~s~d~~v~~w~~ 121 (281)
..-..+-+|+...++... ..........|..+.|-. ..+..-+..|.+.+.+.
T Consensus 132 h~ss~lvLwntdtG~k~W---k~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~ 185 (1062)
T KOG1912|consen 132 HGSSTLVLWNTDTGEKFW---KYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKD 185 (1062)
T ss_pred cCCcEEEEEEccCCceee---ccccCCcceeeeeeCCCCcceEEEEccCceEEEEec
Confidence 666789999987776432 222223345678888843 34444445566655543
No 326
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.34 E-value=0.00025 Score=63.21 Aligned_cols=125 Identities=13% Similarity=0.149 Sum_probs=85.7
Q ss_pred ceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCC-
Q 023500 36 DYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN- 114 (281)
Q Consensus 36 ~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~- 114 (281)
.+....++..|+...+|++|+-+.++|+.|+..|.|+++++.++.. .....+|.+.|+-+.=+-++...++.+.-.
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~---e~s~ncH~SavT~vePs~dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM---EESVNCHQSAVTLVEPSVDGSTQLTSSSSSS 1166 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc---cccccccccccccccccCCcceeeeeccccC
Confidence 3445677888999999999999999999999999999999987753 345688999999888777888665544333
Q ss_pred -eEEEEeCCCCCCCCceeeeeeeeccCCcc-ccEEEEEEccCCCEEEEeeCCCcEEEEeCCccc
Q 023500 115 -TIKVWWAEDTDSDNWHCVQTISESNNGHS-STIWALSFNAKGDKLVSCSDDLTIKIWGADITR 176 (281)
Q Consensus 115 -~v~~w~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~ 176 (281)
-..+|+..+... ..|. ..-.++.|+.....-+.|..-....+||+.+..
T Consensus 1167 PlsaLW~~~s~~~-------------~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~ 1217 (1516)
T KOG1832|consen 1167 PLSALWDASSTGG-------------PRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCS 1217 (1516)
T ss_pred chHHHhccccccC-------------ccccccccceeehhhhHHHHHhcccccceEEEecccCc
Confidence 457887654310 0121 224567887653322222222357789987543
No 327
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.28 E-value=0.058 Score=42.38 Aligned_cols=167 Identities=11% Similarity=0.160 Sum_probs=92.4
Q ss_pred cceeEEEEcCCCC-EEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC-e
Q 023500 4 RTVRSCAWSPSGK-LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN-E 81 (281)
Q Consensus 4 ~~i~~~~~~~~~~-~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~-~ 81 (281)
+.+..++|+|+.+ ++|.....+.|.-++.. ++......+.+ .+....|++..++.++++.-.++.+.+.++.... .
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~ 99 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS 99 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence 4588999999755 67777777777666654 44333334454 3456788888888777777678899999884321 1
Q ss_pred --eEEeE--e---ecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeee---eeeeccCCccccEEEEEE
Q 023500 82 --FECVS--V---LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQ---TISESNNGHSSTIWALSF 151 (281)
Q Consensus 82 --~~~~~--~---~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~---~~~~~~~~h~~~v~~~~~ 151 (281)
..... . ...+...+..++|.|..+.|+.+-+..-.+++.+..........+. .+.. .......+.++.+
T Consensus 100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~S~l~~ 178 (248)
T PF06977_consen 100 LDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD-DKLFVRDLSGLSY 178 (248)
T ss_dssp --EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH--HT--SS---EEEE
T ss_pred cchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccc-ccceeccccceEE
Confidence 11111 1 1124556899999999888888888877777765431100000000 0000 1122345788999
Q ss_pred ccCC-CEEEEeeCCCcEEEEeCC
Q 023500 152 NAKG-DKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 152 ~~~~-~~l~s~~~d~~i~~w~~~ 173 (281)
+|.. .+++....+..+..+|.+
T Consensus 179 ~p~t~~lliLS~es~~l~~~d~~ 201 (248)
T PF06977_consen 179 DPRTGHLLILSDESRLLLELDRQ 201 (248)
T ss_dssp ETTTTEEEEEETTTTEEEEE-TT
T ss_pred cCCCCeEEEEECCCCeEEEECCC
Confidence 9864 456666677788888754
No 328
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.27 E-value=0.09 Score=44.30 Aligned_cols=220 Identities=10% Similarity=0.087 Sum_probs=108.9
Q ss_pred CCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEE--EcC--CCCEEEEecCCCcEEEEEecCCCeeEEeEeecC
Q 023500 15 GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVS--WNA--SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQG 90 (281)
Q Consensus 15 ~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~--~~~--~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~ 90 (281)
+..++.++.++.+..||..+++... .+......+ .+. -+| .+..++.+..++.+..+|..+++.......-..
T Consensus 145 ~~~v~v~~~~g~l~a~d~~tG~~~W--~~~~~~~~~-~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~ 221 (377)
T TIGR03300 145 NGLVVVRTNDGRLTALDAATGERLW--TYSRVTPAL-TLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALP 221 (377)
T ss_pred CCEEEEECCCCeEEEEEcCCCceee--EEccCCCce-eecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccC
Confidence 3455567778999999987765422 222111111 000 011 134677788889999999877653221110000
Q ss_pred Cc-cc---eeEEEecC--CCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCC
Q 023500 91 HA-QD---VKMVQWHP--TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDD 164 (281)
Q Consensus 91 ~~-~~---v~~v~~~p--~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 164 (281)
.. .. ...+.-+| .+..++.++.++.+..++.++.. ..|.. . ..... ... ..+..++.++.|
T Consensus 222 ~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~-~~W~~----~--~~~~~----~p~--~~~~~vyv~~~~ 288 (377)
T TIGR03300 222 KGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGR-VLWKR----D--ASSYQ----GPA--VDDNRLYVTDAD 288 (377)
T ss_pred CCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCc-EEEee----c--cCCcc----Cce--EeCCEEEEECCC
Confidence 00 00 00000112 24577888889999999886542 11211 0 00111 111 245678888889
Q ss_pred CcEEEEeCCccccccCCCCcccceeEEeec-ccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeeeec
Q 023500 165 LTIKIWGADITRMQSGDGYASWRHLCTISG-YHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKE 243 (281)
Q Consensus 165 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (281)
|.+..+|...++..... . .... ....++. .++.++.++.++.+.+++...+.. ....
T Consensus 289 G~l~~~d~~tG~~~W~~-------~-~~~~~~~ssp~i-----~g~~l~~~~~~G~l~~~d~~tG~~---------~~~~ 346 (377)
T TIGR03300 289 GVVVALDRRSGSELWKN-------D-ELKYRQLTAPAV-----VGGYLVVGDFEGYLHWLSREDGSF---------VARL 346 (377)
T ss_pred CeEEEEECCCCcEEEcc-------c-cccCCccccCEE-----ECCEEEEEeCCCEEEEEECCCCCE---------EEEE
Confidence 99999987654332111 0 0000 0011111 245777788899998886543211 1122
Q ss_pred cCCCCCeeE-EEEcCCCCeeEEEeCCCCeEEEE
Q 023500 244 KAHDMDVNS-VQWSPGERRLLASASDDGMIKIW 275 (281)
Q Consensus 244 ~~h~~~v~~-~~~~~~~~~~~~s~~~Dg~v~iw 275 (281)
..+...+.. -.+ .++ .+ ..++.||.|..|
T Consensus 347 ~~~~~~~~~sp~~-~~~-~l-~v~~~dG~l~~~ 376 (377)
T TIGR03300 347 KTDGSGIASPPVV-VGD-GL-LVQTRDGDLYAF 376 (377)
T ss_pred EcCCCccccCCEE-ECC-EE-EEEeCCceEEEe
Confidence 223322222 122 223 44 467779988765
No 329
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.23 E-value=0.074 Score=42.72 Aligned_cols=186 Identities=15% Similarity=0.237 Sum_probs=102.1
Q ss_pred EEcCCCCEEEEeeCC-----CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecC-------CCcEEE----
Q 023500 10 AWSPSGKLLATASFD-----ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR-------DKSVWI---- 73 (281)
Q Consensus 10 ~~~~~~~~l~tg~~d-----~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-------d~~v~~---- 73 (281)
.|+|||++|.+.-+| |.|-+||.. ..+..+..+..|.-.=..+.+.|||..|+.+-. .+..++
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t 135 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT 135 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence 699999998876544 679999987 344556677666544467788999966655421 123332
Q ss_pred -------EEecCCCeeEEeEee--cCCccceeEEEecCCCCeEEEEecCCe-------EEEEeCCCCCCCCceeeeeeee
Q 023500 74 -------WEVMPGNEFECVSVL--QGHAQDVKMVQWHPTMDVLFSCSYDNT-------IKVWWAEDTDSDNWHCVQTISE 137 (281)
Q Consensus 74 -------w~~~~~~~~~~~~~~--~~~~~~v~~v~~~p~~~~l~s~s~d~~-------v~~w~~~~~~~~~~~~~~~~~~ 137 (281)
-|..++...+. ..+ .-|.-.|+-+++.+++..++..-+.+. +-++.-... ...+..
T Consensus 136 M~psL~~ld~~sG~ll~q-~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-------~~~~~~ 207 (305)
T PF07433_consen 136 MQPSLVYLDARSGALLEQ-VELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA-------LRLLPA 207 (305)
T ss_pred cCCceEEEecCCCceeee-eecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc-------ceeccC
Confidence 12222221111 112 224555777777777776666554442 222211110 000100
Q ss_pred c---cCCccccEEEEEEccCCCEE-EEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeee
Q 023500 138 S---NNGHSSTIWALSFNAKGDKL-VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIAS 213 (281)
Q Consensus 138 ~---~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 213 (281)
. ...-...+=++++++++..+ +|+=+-+.+.+||...+...... .-..++.+...+++++++
T Consensus 208 p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~--------------~l~D~cGva~~~~~f~~s 273 (305)
T PF07433_consen 208 PEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV--------------PLPDACGVAPTDDGFLVS 273 (305)
T ss_pred ChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc--------------ccCceeeeeecCCceEEe
Confidence 0 01123567799999998766 55557789999987755432111 112344555566676666
Q ss_pred cCCCC
Q 023500 214 GAADD 218 (281)
Q Consensus 214 ~~~d~ 218 (281)
.+...
T Consensus 274 sG~G~ 278 (305)
T PF07433_consen 274 SGQGQ 278 (305)
T ss_pred CCCcc
Confidence 55543
No 330
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.18 E-value=0.032 Score=37.44 Aligned_cols=100 Identities=14% Similarity=0.108 Sum_probs=59.4
Q ss_pred eeEEEEcC---CC-CEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 6 VRSCAWSP---SG-KLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 6 i~~~~~~~---~~-~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|+++++.. +| +.|+.|+.|..|++|+-. +.+..+..+ +.|.++.-.+. .+++-+-.+|+|-+++-.. +
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~----e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~-R- 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD----EIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRSQ-R- 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC----cEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCcc-e-
Confidence 55565444 44 368899999999999632 345666644 44555554433 6688888888888886421 1
Q ss_pred eEEeEeecCCccceeEEEe-cCCC--C-eEEEEecCCeEE
Q 023500 82 FECVSVLQGHAQDVKMVQW-HPTM--D-VLFSCSYDNTIK 117 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~-~p~~--~-~l~s~s~d~~v~ 117 (281)
+-..+... .++++.+ ..++ . -|++|..+|.|-
T Consensus 74 ---lWRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 ---LWRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ---eeeeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 11122222 2444443 3332 2 588888888774
No 331
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.12 E-value=0.092 Score=41.59 Aligned_cols=154 Identities=16% Similarity=0.093 Sum_probs=86.3
Q ss_pred ceeEEEEcCCCCEEEEee--CC-CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEe-cCCC
Q 023500 5 TVRSCAWSPSGKLLATAS--FD-ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEV-MPGN 80 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~--~d-~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~-~~~~ 80 (281)
.+...+++++|+.+|... .+ ..+.++..... ... .+.+ ..+..-+|++++...+....+...+++.. ..+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-~~~--~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-VRP--VLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-cee--eccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 577889999999776554 33 34444433222 111 1122 36677789999877766666666676642 2222
Q ss_pred eeEEeEee-cCCccceeEEEecCCCCeEEEEe---cCCeEEEEeCCCCCCC-CceeeeeeeeccCCccccEEEEEEccCC
Q 023500 81 EFECVSVL-QGHAQDVKMVQWHPTMDVLFSCS---YDNTIKVWWAEDTDSD-NWHCVQTISESNNGHSSTIWALSFNAKG 155 (281)
Q Consensus 81 ~~~~~~~~-~~~~~~v~~v~~~p~~~~l~s~s---~d~~v~~w~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 155 (281)
. .....- ..-...|..++++|++..++... .++.|.+=-+...... ........ .........+..+.|.+++
T Consensus 100 ~-~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~-~~~~~~~~~v~~v~W~~~~ 177 (253)
T PF10647_consen 100 G-EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPR-RVAPPLLSDVTDVAWSDDS 177 (253)
T ss_pred c-eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccce-EecccccCcceeeeecCCC
Confidence 1 111111 11111799999999999765544 3567776655543332 11111111 1111223568899999998
Q ss_pred CEEEEeeCCC
Q 023500 156 DKLVSCSDDL 165 (281)
Q Consensus 156 ~~l~s~~~d~ 165 (281)
.+++.+...+
T Consensus 178 ~L~V~~~~~~ 187 (253)
T PF10647_consen 178 TLVVLGRSAG 187 (253)
T ss_pred EEEEEeCCCC
Confidence 8766665443
No 332
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.10 E-value=0.04 Score=37.01 Aligned_cols=100 Identities=13% Similarity=0.170 Sum_probs=59.4
Q ss_pred eeEEEEc---CCC-CEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCC
Q 023500 50 VKSVSWN---ASG-TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTD 125 (281)
Q Consensus 50 v~~v~~~---~~~-~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~ 125 (281)
|+++++. .+| +.|+.||+|..||+|+-. +.+..+.. .+.|+++.-.+. ..++.+-.+|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-----e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--- 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-----EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRS--- 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-----cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCc---
Confidence 4455543 344 469999999999999732 22333333 345666665555 568888899999998432
Q ss_pred CCCceeeeeeeeccCCccccEEEEEEcc---CC-CEEEEeeCCCcEE
Q 023500 126 SDNWHCVQTISESNNGHSSTIWALSFNA---KG-DKLVSCSDDLTIK 168 (281)
Q Consensus 126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~-~~l~s~~~d~~i~ 168 (281)
.+-|+. ... ..+.++.+.. +| ..|++|-.+|.|-
T Consensus 72 ~RlWRi-------KSK--~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 72 QRLWRI-------KSK--NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ceeeee-------ccC--CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 122221 111 2245555432 33 2688888888763
No 333
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.0039 Score=57.01 Aligned_cols=98 Identities=17% Similarity=0.225 Sum_probs=65.3
Q ss_pred CCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCcc
Q 023500 14 SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQ 93 (281)
Q Consensus 14 ~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~ 93 (281)
.+..++.|+..|.+-+.|..++ ..+...=+.-.++|++++|+.+|.+++.|-.+|.|.+||+...+... .+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~---~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILK---VITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCccee---eeeecCC
Confidence 4556778887888888776553 11111112234799999999999999999999999999998765433 3333333
Q ss_pred ---ceeEEEecCCCCeEEEEecCCe
Q 023500 94 ---DVKMVQWHPTMDVLFSCSYDNT 115 (281)
Q Consensus 94 ---~v~~v~~~p~~~~l~s~s~d~~ 115 (281)
.+-.+.+..++..++++...|+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc
Confidence 3334444455557777666665
No 334
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.0049 Score=53.14 Aligned_cols=74 Identities=20% Similarity=0.307 Sum_probs=62.4
Q ss_pred CCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCcccee-EEEecCCCCeEEEEecCCeEEEEeCCCCC
Q 023500 48 NEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVK-MVQWHPTMDVLFSCSYDNTIKVWWAEDTD 125 (281)
Q Consensus 48 ~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~-~v~~~p~~~~l~s~s~d~~v~~w~~~~~~ 125 (281)
-.+.-+.|+|.-..||.+-.+|.|.+..+. ++.+.++..|..+++ +++|.|+|+.++.|=.||+|++.|++...
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n----~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN----WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec----cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 457788999998999999999999988875 344566666777777 99999999999999999999999998764
No 335
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.00 E-value=0.0031 Score=35.28 Aligned_cols=30 Identities=20% Similarity=0.384 Sum_probs=27.4
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecC
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDV 33 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~ 33 (281)
..|.+++|+|..+++|.|..||.|.+|..+
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 468999999999999999999999999763
No 336
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.00 E-value=0.14 Score=42.12 Aligned_cols=113 Identities=12% Similarity=0.053 Sum_probs=70.4
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCc-eeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 3 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGD-YECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~-~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
.++|++++-- .+.++++. .+.|.+|+....+ ......+. .++..++....+++|+.|..-+.+.++.......
T Consensus 88 ~g~V~ai~~~-~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~---~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~ 161 (321)
T PF03178_consen 88 KGPVTAICSF-NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYD---SPFYITSLSVFKNYILVGDAMKSVSLLRYDEENN 161 (321)
T ss_dssp SS-EEEEEEE-TTEEEEEE--TTEEEEEEEETTSSEEEEEEE----BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE
T ss_pred cCcceEhhhh-CCEEEEee--cCEEEEEEccCcccchhhheec---ceEEEEEEeccccEEEEEEcccCEEEEEEEccCC
Confidence 4667777655 44444333 4789999987766 54444433 2223444444567999999889999887654332
Q ss_pred -eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCC
Q 023500 82 -FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAE 122 (281)
Q Consensus 82 -~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~ 122 (281)
...+.. ......++++.+-++++.++.+..+|.+.++...
T Consensus 162 ~l~~va~-d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 162 KLILVAR-DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp -EEEEEE-ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEEEe-cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 222222 1224457888888676789999999999988765
No 337
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.99 E-value=0.17 Score=42.35 Aligned_cols=71 Identities=20% Similarity=0.353 Sum_probs=41.6
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCC----------------CCCeeEEEEcCCCCEEEEecC
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGH----------------ENEVKSVSWNASGTLLATCGR 67 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h----------------~~~v~~v~~~~~~~~l~s~~~ 67 (281)
..+....|+|+|+.+|-.. +++|.+++..++....+. ..|- -+.-..+-|||||++|+....
T Consensus 43 ~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT-~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 43 PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLT-TDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESE-S--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred cccccceeecCCCeeEEEe-cCceEEEECCCCCeEEec-cccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 3567789999999998765 678999876555332222 2220 012246789999999887643
Q ss_pred -CCcEEEEEe
Q 023500 68 -DKSVWIWEV 76 (281)
Q Consensus 68 -d~~v~~w~~ 76 (281)
+..|+.+.+
T Consensus 121 d~~~v~~~~~ 130 (353)
T PF00930_consen 121 DEREVPEYPL 130 (353)
T ss_dssp E-TTS-EEEE
T ss_pred CCcCCceEEe
Confidence 344444443
No 338
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.98 E-value=0.2 Score=43.09 Aligned_cols=225 Identities=16% Similarity=0.210 Sum_probs=104.9
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEE-ecCCCeeEE
Q 023500 6 VRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWE-VMPGNEFEC 84 (281)
Q Consensus 6 i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~-~~~~~~~~~ 84 (281)
...+.++|+|++++. +.||.-.||....... .. .+.-....|.++++ +|+-....+|.++. +....
T Consensus 35 p~~ls~npngr~v~V-~g~geY~iyt~~~~r~--k~-----~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~---- 101 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLV-CGDGEYEIYTALAWRN--KA-----FGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEV---- 101 (443)
T ss_dssp -SEEEE-TTSSEEEE-EETTEEEEEETTTTEE--EE-----EEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-T----
T ss_pred CeeEEECCCCCEEEE-EcCCEEEEEEccCCcc--cc-----cCceeEEEEecCcc-EEEEECCCeEEEEEcCcccc----
Confidence 568899999999887 5588888886433221 11 23445688988555 55555578899874 32111
Q ss_pred eEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCC
Q 023500 85 VSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDD 164 (281)
Q Consensus 85 ~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 164 (281)
...+.-. ..+..+ .+ |.+|+..+. +.|.+||.++.. .+.++. -..|..+-|++++++++..+.+
T Consensus 102 ~k~i~~~-~~~~~I--f~-G~LL~~~~~-~~i~~yDw~~~~-----~i~~i~------v~~vk~V~Ws~~g~~val~t~~ 165 (443)
T PF04053_consen 102 VKSIKLP-FSVEKI--FG-GNLLGVKSS-DFICFYDWETGK-----LIRRID------VSAVKYVIWSDDGELVALVTKD 165 (443)
T ss_dssp T-----S-S-EEEE--E--SSSEEEEET-TEEEEE-TTT-------EEEEES------S-E-EEEEE-TTSSEEEEE-S-
T ss_pred ceEEcCC-cccceE--Ec-CcEEEEECC-CCEEEEEhhHcc-----eeeEEe------cCCCcEEEEECCCCEEEEEeCC
Confidence 0111111 012221 22 666666554 489999887653 344443 1237899999999999888866
Q ss_pred CcEEEEeCCcccc--ccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeeee
Q 023500 165 LTIKIWGADITRM--QSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKK 242 (281)
Q Consensus 165 ~~i~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (281)
.+.+++.+.... ...++... ..+... -....|.+..|..+-++.+... .+..+ +..+ . .. +.
T Consensus 166 -~i~il~~~~~~~~~~~~~g~e~--~f~~~~-E~~~~IkSg~W~~d~fiYtT~~--~lkYl-~~Ge------~-~~-i~- 229 (443)
T PF04053_consen 166 -SIYILKYNLEAVAAIPEEGVED--AFELIH-EISERIKSGCWVEDCFIYTTSN--HLKYL-VNGE------T-GI-IA- 229 (443)
T ss_dssp -SEEEEEE-HHHHHHBTTTB-GG--GEEEEE-EE-S--SEEEEETTEEEEE-TT--EEEEE-ETTE------E-EE-EE-
T ss_pred -eEEEEEecchhcccccccCchh--ceEEEE-EecceeEEEEEEcCEEEEEcCC--eEEEE-EcCC------c-ce-EE-
Confidence 577776543211 11112211 111111 1146778888887744444333 55553 2211 0 01 11
Q ss_pred ccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 243 EKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 243 ~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
.-+.++.=+...|.... +...-.|+.+..+.+.
T Consensus 230 --~ld~~~yllgy~~~~~~-ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 230 --HLDKPLYLLGYLPKENR-LYLIDRDGNVISYELD 262 (443)
T ss_dssp --E-SS--EEEEEETTTTE-EEEE-TT--EEEEE--
T ss_pred --EcCCceEEEEEEccCCE-EEEEECCCCEEEEEEC
Confidence 11345555666665444 4456677777777654
No 339
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.92 E-value=0.19 Score=41.97 Aligned_cols=102 Identities=19% Similarity=0.404 Sum_probs=60.3
Q ss_pred cCCCCEEEEee---------CCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCee
Q 023500 12 SPSGKLLATAS---------FDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF 82 (281)
Q Consensus 12 ~~~~~~l~tg~---------~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~ 82 (281)
|||+++++... ..+.+.|||..++....+.. ....+....|+|+|+.++-... +.|.++++..+.+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~---~~~~~~~~~~sP~g~~~~~v~~-~nly~~~~~~~~~~ 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP---PPPKLQDAKWSPDGKYIAFVRD-NNLYLRDLATGQET 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS----EETTBSEEEE-SSSTEEEEEET-TEEEEESSTTSEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC---CccccccceeecCCCeeEEEec-CceEEEECCCCCeE
Confidence 68888776632 23567888888775443332 2567889999999999887764 78888876544221
Q ss_pred EEeEeecC-------C---------ccceeEEEecCCCCeEEEEecC-CeEEEE
Q 023500 83 ECVSVLQG-------H---------AQDVKMVQWHPTMDVLFSCSYD-NTIKVW 119 (281)
Q Consensus 83 ~~~~~~~~-------~---------~~~v~~v~~~p~~~~l~s~s~d-~~v~~w 119 (281)
.+. ..+ - -..-..+-|+|+++.|+....| ..|+.+
T Consensus 77 -~lT-~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~ 128 (353)
T PF00930_consen 77 -QLT-TDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEY 128 (353)
T ss_dssp -ESE-S--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EE
T ss_pred -Eec-cccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceE
Confidence 111 111 0 0122467799999987765544 445444
No 340
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.84 E-value=0.12 Score=46.15 Aligned_cols=161 Identities=18% Similarity=0.226 Sum_probs=82.8
Q ss_pred ceeEEEEcCCCCEEEEee------CCCcEEEEecC-CCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCc-EEEEEe
Q 023500 5 TVRSCAWSPSGKLLATAS------FDATTCIWEDV-GGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKS-VWIWEV 76 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~------~d~~i~lw~~~-~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~-v~~w~~ 76 (281)
.+...+++|+|+.+|..- .|..-.||-.. ++....+ ..+. ....-.|+|+|..|.+.+.... +++.+-
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~l--t~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQV--LEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceee--ecCC--CCCCceECCCCCceEEEecCcceEEEecc
Confidence 567889999999776554 34444555321 2222222 2232 3677899999988777654322 222221
Q ss_pred cCCCeeEEeEe----ec-CCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEE
Q 023500 77 MPGNEFECVSV----LQ-GHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF 151 (281)
Q Consensus 77 ~~~~~~~~~~~----~~-~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 151 (281)
....+...+.. .. .....|..+.|+|++..++... ++.|.+=-+........ .+........+-...+..++|
T Consensus 427 ~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~-~l~~~~~l~~~l~~~~~~l~W 504 (591)
T PRK13616 427 PATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQY-ALTNPREVGPGLGDTAVSLDW 504 (591)
T ss_pred CCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCce-eecccEEeecccCCccccceE
Confidence 11111100000 00 1234699999999999877655 47776633333222221 111111111112233577899
Q ss_pred ccCCCEEEEeeCCCcEEEEeC
Q 023500 152 NAKGDKLVSCSDDLTIKIWGA 172 (281)
Q Consensus 152 ~~~~~~l~s~~~d~~i~~w~~ 172 (281)
.+++.+ +.+..++.-.+|-+
T Consensus 505 ~~~~~L-~V~~~~~~~~v~~v 524 (591)
T PRK13616 505 RTGDSL-VVGRSDPEHPVWYV 524 (591)
T ss_pred ecCCEE-EEEecCCCCceEEE
Confidence 998874 45555555556644
No 341
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.81 E-value=0.16 Score=39.51 Aligned_cols=142 Identities=13% Similarity=0.089 Sum_probs=75.8
Q ss_pred CCcEEEEecCCCceeeeeeecC-CCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecC
Q 023500 24 DATTCIWEDVGGDYECVATLEG-HENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP 102 (281)
Q Consensus 24 d~~i~lw~~~~~~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p 102 (281)
++.|..||..+++......+.. ....+ +. ..+++..+++++.++.+..||...++...... +.+. +.... ..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~-~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~-~~~~---~~~~~-~~ 74 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPV-AT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFD-LPGP---ISGAP-VV 74 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEE-ET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEE-CSSC---GGSGE-EE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCcc-ce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEee-cccc---cccee-ee
Confidence 5778888887765433333321 12222 11 23466777777899999999987775432222 2211 11111 12
Q ss_pred CCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCcccc
Q 023500 103 TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRM 177 (281)
Q Consensus 103 ~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~ 177 (281)
.+..++.++.++.+..++..+... .|+....... ... ..........+..++.+..++.+..+|.+.++.
T Consensus 75 ~~~~v~v~~~~~~l~~~d~~tG~~-~W~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~ 144 (238)
T PF13360_consen 75 DGGRVYVGTSDGSLYALDAKTGKV-LWSIYLTSSP---PAG-VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKL 144 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSCE-EEEEEE-SSC---TCS-TB--SEEEEETTEEEEEETCSEEEEEETTTTEE
T ss_pred cccccccccceeeeEecccCCcce-eeeecccccc---ccc-cccccCceEecCEEEEEeccCcEEEEecCCCcE
Confidence 345666666888898888665431 2221111100 011 111122222367788888899999999876554
No 342
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.78 E-value=0.0055 Score=34.29 Aligned_cols=30 Identities=27% Similarity=0.493 Sum_probs=27.1
Q ss_pred ccceeEEEecCCCCeEEEEecCCeEEEEeC
Q 023500 92 AQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121 (281)
Q Consensus 92 ~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~ 121 (281)
...|.+++|+|..+++|.++.+|.|.++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 346899999999999999999999999965
No 343
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.71 E-value=0.27 Score=43.98 Aligned_cols=169 Identities=16% Similarity=0.203 Sum_probs=86.1
Q ss_pred CCCCeeEEEEcCCCCEEEEec------CCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCe-EEE
Q 023500 46 HENEVKSVSWNASGTLLATCG------RDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNT-IKV 118 (281)
Q Consensus 46 h~~~v~~v~~~~~~~~l~s~~------~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~-v~~ 118 (281)
....+...+++|+|+.++..- .|..-.+|-...+..... .+.+. ....-.|+|++..+++.+.... +++
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~--lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQ--VLEGH--SLTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCccee--eecCC--CCCCceECCCCCceEEEecCcceEEE
Confidence 334677889999999876544 345445565433332222 22332 3788899999888877764423 233
Q ss_pred EeCCCCCCCCceeeeeee--eccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeeccc
Q 023500 119 WWAEDTDSDNWHCVQTIS--ESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYH 196 (281)
Q Consensus 119 w~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (281)
..-.... ..+ +..+. .........|..+.|||||..++... ++.|.+=-+. . ...+...+.....+....
T Consensus 424 ~~~~~~g-ql~--~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vv--r--~~~G~~~l~~~~~l~~~l 495 (591)
T PRK13616 424 IRDPATG-QLA--RTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVE--Q--TEDGQYALTNPREVGPGL 495 (591)
T ss_pred eccCCCc-eEE--EEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEE--e--CCCCceeecccEEeeccc
Confidence 2111100 000 00000 00001235699999999999877655 4655542111 0 011111111111111112
Q ss_pred CcceEEEEeCCCceeeecCCCCcEEEEecc
Q 023500 197 DRTIFSVHWSREGIIASGAADDSVQFFVES 226 (281)
Q Consensus 197 ~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~ 226 (281)
...+.++.|..++.++.+..+....+|.+.
T Consensus 496 ~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~ 525 (591)
T PRK13616 496 GDTAVSLDWRTGDSLVVGRSDPEHPVWYVN 525 (591)
T ss_pred CCccccceEecCCEEEEEecCCCCceEEEe
Confidence 334577889998877666665555566543
No 344
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.68 E-value=0.081 Score=45.17 Aligned_cols=143 Identities=21% Similarity=0.254 Sum_probs=79.7
Q ss_pred eeEEEEcCCCCEEEEee---CC-CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEE-EecCCCcEEEE--EecC
Q 023500 6 VRSCAWSPSGKLLATAS---FD-ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLA-TCGRDKSVWIW--EVMP 78 (281)
Q Consensus 6 i~~~~~~~~~~~l~tg~---~d-~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~v~~w--~~~~ 78 (281)
+..-+|+|+++.++-.. .. ..+.+++..+++.+.+..+.++.. .-+|+|||++|+ +...|+...+| |+..
T Consensus 195 ~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~---~P~fspDG~~l~f~~~rdg~~~iy~~dl~~ 271 (425)
T COG0823 195 ILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNG---APAFSPDGSKLAFSSSRDGSPDIYLMDLDG 271 (425)
T ss_pred eeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccC---CccCCCCCCEEEEEECCCCCccEEEEcCCC
Confidence 44457889887654432 22 347788887776555555554443 468999998754 55667765555 4443
Q ss_pred CCeeEEeEeecCCccceeEEEecCCCCeEEE-EecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCE
Q 023500 79 GNEFECVSVLQGHAQDVKMVQWHPTMDVLFS-CSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK 157 (281)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s-~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 157 (281)
... ..+..-...-+.-.|+|+|..++- .+..|.-.||-....... ...+.... ..-..-.|+|+|++
T Consensus 272 ~~~----~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~----~~riT~~~----~~~~~p~~SpdG~~ 339 (425)
T COG0823 272 KNL----PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ----VTRLTFSG----GGNSNPVWSPDGDK 339 (425)
T ss_pred Ccc----eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc----eeEeeccC----CCCcCccCCCCCCE
Confidence 331 112222222236679999997654 444555555543322211 11121111 11125678899998
Q ss_pred EEEeeC
Q 023500 158 LVSCSD 163 (281)
Q Consensus 158 l~s~~~ 163 (281)
++..+.
T Consensus 340 i~~~~~ 345 (425)
T COG0823 340 IVFESS 345 (425)
T ss_pred EEEEec
Confidence 887764
No 345
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.64 E-value=0.21 Score=45.69 Aligned_cols=139 Identities=12% Similarity=0.134 Sum_probs=85.3
Q ss_pred cCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCC-------CCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeec
Q 023500 66 GRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT-------MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISES 138 (281)
Q Consensus 66 ~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~-------~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~ 138 (281)
.....|.-.|+..++ .+..+..|... .-..+.|+ ....+.|-.++.+..||..-.. .+.+..-. .
T Consensus 501 ~~~~~ly~mDLe~GK---VV~eW~~~~~~-~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~---~k~v~~~~-k 572 (794)
T PF08553_consen 501 NNPNKLYKMDLERGK---VVEEWKVHDDI-PVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG---NKLVDSQS-K 572 (794)
T ss_pred CCCCceEEEecCCCc---EEEEeecCCCc-ceeEecccccccccCCCceEEEECCCceEEeccCCCC---Cceeeccc-c
Confidence 345667667776654 34556555432 23345553 2345667778899999876433 11221111 1
Q ss_pred cCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCC
Q 023500 139 NNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADD 218 (281)
Q Consensus 139 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~ 218 (281)
.........|++-+.+| ++|.|+.+|.||+||. ++. +-...++ ....+|..+..+.+|..+.+.-+.
T Consensus 573 ~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~----------~AKT~lp-~lG~pI~~iDvt~DGkwilaTc~t 639 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGK----------RAKTALP-GLGDPIIGIDVTADGKWILATCKT 639 (794)
T ss_pred ccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cch----------hhhhcCC-CCCCCeeEEEecCCCcEEEEeecc
Confidence 11223456777777776 8999999999999984 221 1111222 246899999999999877777777
Q ss_pred cEEEEec
Q 023500 219 SVQFFVE 225 (281)
Q Consensus 219 ~~~~~~~ 225 (281)
.+.+++.
T Consensus 640 yLlLi~t 646 (794)
T PF08553_consen 640 YLLLIDT 646 (794)
T ss_pred eEEEEEE
Confidence 7777754
No 346
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.62 E-value=0.36 Score=40.90 Aligned_cols=116 Identities=9% Similarity=0.062 Sum_probs=72.9
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecCCC-----------------------------------------ceeeeeee
Q 023500 5 TVRSCAWSPSGKLLATASFDATTCIWEDVGG-----------------------------------------DYECVATL 43 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~-----------------------------------------~~~~~~~~ 43 (281)
.|+.+.|+++..-||.|...|.+.||....+ .+.+..-+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 5889999999888999999999999853211 01122233
Q ss_pred cCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecC------CccceeEEEecC-----C---CCeEEE
Q 023500 44 EGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQG------HAQDVKMVQWHP-----T---MDVLFS 109 (281)
Q Consensus 44 ~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~------~~~~v~~v~~~p-----~---~~~l~s 109 (281)
+...++|++++.| +=.+++.|.++|++.|.|++...- -....+.. ....++++.|.. + .-.++.
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPav-I~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAV-IYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEE-EEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeE-EeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 4456889999886 445889999999999999953321 11122222 244677787752 2 236888
Q ss_pred EecCCeEEEEeCC
Q 023500 110 CSYDNTIKVWWAE 122 (281)
Q Consensus 110 ~s~d~~v~~w~~~ 122 (281)
|...|.+.+|.+.
T Consensus 161 GTn~G~v~~fkIl 173 (395)
T PF08596_consen 161 GTNSGNVLTFKIL 173 (395)
T ss_dssp EETTSEEEEEEEE
T ss_pred EeCCCCEEEEEEe
Confidence 8899999998764
No 347
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.60 E-value=0.3 Score=39.65 Aligned_cols=155 Identities=12% Similarity=0.227 Sum_probs=76.2
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecC-CCee
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP-GNEF 82 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~-~~~~ 82 (281)
..+..+..+++|++++.++..+...-||.-...+.+.. ..-...|..+.|+|++...+.+ ..+.|+.=+... ..++
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~--r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w 221 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHN--RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETW 221 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEc--cCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccc
Confidence 35778888999999988776666677876544443322 2345789999999998875554 667777655211 1111
Q ss_pred EE-eEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 83 EC-VSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 83 ~~-~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
.. +..+......+..++|.++....++|+ .|++.+= .+ .-..|+...... .-+.....+.|.+..+-++.
T Consensus 222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~~S-~D--gGktW~~~~~~~----~~~~n~~~i~f~~~~~gf~l- 292 (302)
T PF14870_consen 222 SEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLLVS-TD--GGKTWQKDRVGE----NVPSNLYRIVFVNPDKGFVL- 292 (302)
T ss_dssp ---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EEEE-SS--TTSS-EE-GGGT----TSSS---EEEEEETTEEEEE-
T ss_pred ccccCCcccCceeeEEEEecCCCCEEEEeC-CccEEEe-CC--CCccceECcccc----CCCCceEEEEEcCCCceEEE-
Confidence 11 111222334578889998876666554 5555442 11 122344332221 22455778888766555554
Q ss_pred eCCCcEEEE
Q 023500 162 SDDLTIKIW 170 (281)
Q Consensus 162 ~~d~~i~~w 170 (281)
+.+|.|.-|
T Consensus 293 G~~G~ll~~ 301 (302)
T PF14870_consen 293 GQDGVLLRY 301 (302)
T ss_dssp -STTEEEEE
T ss_pred CCCcEEEEe
Confidence 567766444
No 348
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.49 E-value=0.046 Score=46.66 Aligned_cols=100 Identities=22% Similarity=0.211 Sum_probs=56.4
Q ss_pred EEEEcCCCCEEE-EeeCCCcEEEE--ecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEe-cCCCcEEEEEecCCCeeE
Q 023500 8 SCAWSPSGKLLA-TASFDATTCIW--EDVGGDYECVATLEGHENEVKSVSWNASGTLLATC-GRDKSVWIWEVMPGNEFE 83 (281)
Q Consensus 8 ~~~~~~~~~~l~-tg~~d~~i~lw--~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~-~~d~~v~~w~~~~~~~~~ 83 (281)
.-+|+|||+.|| +...|+...|| |..++... .+..-.+.-..=.|+|||+.|+-. +..|.-.+|-........
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~---~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~ 318 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP---RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV 318 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCcce---ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce
Confidence 347999998655 55677766665 44444322 233222222244689999987644 455665666554332211
Q ss_pred EeEeecCCccceeEEEecCCCCeEEEEec
Q 023500 84 CVSVLQGHAQDVKMVQWHPTMDVLFSCSY 112 (281)
Q Consensus 84 ~~~~~~~~~~~v~~v~~~p~~~~l~s~s~ 112 (281)
..+......-....|+|++..++..+.
T Consensus 319 --~riT~~~~~~~~p~~SpdG~~i~~~~~ 345 (425)
T COG0823 319 --TRLTFSGGGNSNPVWSPDGDKIVFESS 345 (425)
T ss_pred --eEeeccCCCCcCccCCCCCCEEEEEec
Confidence 112222222237789999998877664
No 349
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.47 E-value=0.013 Score=44.31 Aligned_cols=104 Identities=13% Similarity=0.153 Sum_probs=57.1
Q ss_pred CCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCee-EEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCc-
Q 023500 15 GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVK-SVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHA- 92 (281)
Q Consensus 15 ~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~-~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~- 92 (281)
+.-++.|..+|.|.+|..+....-+-....+ ...|- .|.--.++.+..+++.|+.|+.|++++.+. ......|.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~-~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~---~g~~g~h~~ 145 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSG-EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV---LGYVGQHNF 145 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcc-cccceeccccccccceeEEeccCCceeeeccccCce---eeeeccccC
Confidence 3457789999999999765211000000001 11221 222222456788999999999999976643 22233444
Q ss_pred cceeEEEecCCCCeEEEE--ecCCeEEEEeCC
Q 023500 93 QDVKMVQWHPTMDVLFSC--SYDNTIKVWWAE 122 (281)
Q Consensus 93 ~~v~~v~~~p~~~~l~s~--s~d~~v~~w~~~ 122 (281)
..+........+..+.++ |.|..++.|+++
T Consensus 146 ~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 146 ESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred CCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 334444444445555555 666666666554
No 350
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.42 E-value=0.2 Score=44.39 Aligned_cols=74 Identities=14% Similarity=0.132 Sum_probs=50.4
Q ss_pred CCeeEEEEcCCCCEEEE-ecCCCcEEEEEecCCCee-----E----Ee-EeecCCccceeEEEecCCCCeEEEEecCCeE
Q 023500 48 NEVKSVSWNASGTLLAT-CGRDKSVWIWEVMPGNEF-----E----CV-SVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 116 (281)
Q Consensus 48 ~~v~~v~~~~~~~~l~s-~~~d~~v~~w~~~~~~~~-----~----~~-~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v 116 (281)
..-+.+.++|||++++. +..+.+|.|.|+...... + .. .+..+- .-.-.+|.++++.+.|---|..|
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGl--GPLHTaFDg~G~aytslf~dsqv 398 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGL--GPLHTAFDGRGNAYTTLFLDSQI 398 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCC--CcceEEECCCCCEEEeEeeccee
Confidence 45578899999998655 556999999998753320 0 01 111111 12345688888888888899999
Q ss_pred EEEeCCC
Q 023500 117 KVWWAED 123 (281)
Q Consensus 117 ~~w~~~~ 123 (281)
-.|+++.
T Consensus 399 ~kwn~~~ 405 (635)
T PRK02888 399 VKWNIEA 405 (635)
T ss_pred EEEehHH
Confidence 9998865
No 351
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.42 E-value=0.32 Score=43.17 Aligned_cols=74 Identities=16% Similarity=0.169 Sum_probs=49.1
Q ss_pred eeEEEecCCCCeEE-EEecCCeEEEEeCCCCCC------CCceee-eeeeeccCCccccEEEEEEccCCCEEEEeeCCCc
Q 023500 95 VKMVQWHPTMDVLF-SCSYDNTIKVWWAEDTDS------DNWHCV-QTISESNNGHSSTIWALSFNAKGDKLVSCSDDLT 166 (281)
Q Consensus 95 v~~v~~~p~~~~l~-s~s~d~~v~~w~~~~~~~------~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~ 166 (281)
...+.++|++++++ ++..+++|.|.|++.... ....++ .++.. + ......+|.++|....|..-|+.
T Consensus 323 PHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev---G--lGPLHTaFDg~G~aytslf~dsq 397 (635)
T PRK02888 323 PHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL---G--LGPLHTAFDGRGNAYTTLFLDSQ 397 (635)
T ss_pred ccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc---C--CCcceEEECCCCCEEEeEeecce
Confidence 46788999999865 455588999999876421 111111 11111 1 22345789999888888888999
Q ss_pred EEEEeCC
Q 023500 167 IKIWGAD 173 (281)
Q Consensus 167 i~~w~~~ 173 (281)
|..|+++
T Consensus 398 v~kwn~~ 404 (635)
T PRK02888 398 IVKWNIE 404 (635)
T ss_pred eEEEehH
Confidence 9999875
No 352
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.39 E-value=0.68 Score=41.40 Aligned_cols=223 Identities=16% Similarity=0.222 Sum_probs=106.8
Q ss_pred CCCEEEEeeCCC------cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC-C-----cEEEEEecCCCe
Q 023500 14 SGKLLATASFDA------TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD-K-----SVWIWEVMPGNE 81 (281)
Q Consensus 14 ~~~~l~tg~~d~------~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d-~-----~v~~w~~~~~~~ 81 (281)
.+.+++.||.++ .+..||+.++.+.....+.. ...-.+++.. ++...++||.| + ++..+|.....
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~-~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~- 360 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPS-PRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ- 360 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCc-ccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc-
Confidence 356778888774 57789988887766666552 3333444443 45677888888 3 55566654332
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCe-----EEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCC
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNT-----IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD 156 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~-----v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 156 (281)
+.....+.......-.+ .-.+.+.+.|+.||. +-.||... ..|..+...... +...-... -++.
T Consensus 361 W~~~a~M~~~R~~~~v~--~l~g~iYavGG~dg~~~l~svE~YDp~~---~~W~~va~m~~~----r~~~gv~~--~~g~ 429 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVA--VLDGKLYAVGGFDGEKSLNSVECYDPVT---NKWTPVAPMLTR----RSGHGVAV--LGGK 429 (571)
T ss_pred eeccCCccCccccceeE--EECCEEEEEeccccccccccEEEecCCC---CcccccCCCCcc----eeeeEEEE--ECCE
Confidence 32222222111111111 124567888888873 44554432 234333322211 11111111 2566
Q ss_pred EEEEeeCCCc------EEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCc-----EEEEec
Q 023500 157 KLVSCSDDLT------IKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDS-----VQFFVE 225 (281)
Q Consensus 157 ~l~s~~~d~~------i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~-----~~~~~~ 225 (281)
..+.|+.++. +..||..... |+....+.. .+.-..+....+.+++.|+.|+. +..|++
T Consensus 430 iYi~GG~~~~~~~l~sve~YDP~t~~---------W~~~~~M~~--~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp 498 (571)
T KOG4441|consen 430 LYIIGGGDGSSNCLNSVECYDPETNT---------WTLIAPMNT--RRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDP 498 (571)
T ss_pred EEEEcCcCCCccccceEEEEcCCCCc---------eeecCCccc--ccccceEEEECCEEEEECCccCCCccceEEEEcC
Confidence 7777776653 4456554332 332222211 11112233345567777877653 444544
Q ss_pred ccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCe
Q 023500 226 SKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGM 271 (281)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~ 271 (281)
..+ . ...+.........+-.+.+ +..+++.|+.||.
T Consensus 499 ~~~------~-W~~v~~m~~~rs~~g~~~~---~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 499 ETN------Q-WTMVAPMTSPRSAVGVVVL---GGKLYAVGGFDGN 534 (571)
T ss_pred CCC------c-eeEcccCccccccccEEEE---CCEEEEEecccCc
Confidence 321 1 1111111112222222333 3457888988875
No 353
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.37 E-value=0.55 Score=40.14 Aligned_cols=154 Identities=13% Similarity=0.144 Sum_probs=76.2
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCc-eee---eeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCC
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGD-YEC---VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~-~~~---~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~ 79 (281)
+.|..+.|+.+.++ +.-..||.+++||..+.. +.. +....-....+....+..+|-.+++++ +.+ +-+.+.
T Consensus 81 ~~iv~~~wt~~e~L-vvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~--~~~--~~v~n~ 155 (410)
T PF04841_consen 81 GRIVGMGWTDDEEL-VVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGN--NRF--YVVNNI 155 (410)
T ss_pred CCEEEEEECCCCeE-EEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCEEEECCC--CeE--EEEeCc
Confidence 46778888875444 456789999999875432 000 111111112233334444565555543 333 333322
Q ss_pred CeeEEeEee---cC-------CccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEE
Q 023500 80 NEFECVSVL---QG-------HAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWAL 149 (281)
Q Consensus 80 ~~~~~~~~~---~~-------~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 149 (281)
.+....+.+ .. +........+..+....+....++.+.+.+-... ..+ ...+++..+
T Consensus 156 ~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~--------~~i-----~~~~~i~~i 222 (410)
T PF04841_consen 156 DEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF--------KQI-----DSDGPIIKI 222 (410)
T ss_pred cccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc--------ccc-----cCCCCeEEE
Confidence 211000000 00 0000000223334444444455555553221110 000 113578999
Q ss_pred EEccCCCEEEEeeCCCcEEEEeCCcc
Q 023500 150 SFNAKGDKLVSCSDDLTIKIWGADIT 175 (281)
Q Consensus 150 ~~~~~~~~l~s~~~d~~i~~w~~~~~ 175 (281)
+.||++++++.-..+|.+.+...+..
T Consensus 223 avSpng~~iAl~t~~g~l~v~ssDf~ 248 (410)
T PF04841_consen 223 AVSPNGKFIALFTDSGNLWVVSSDFS 248 (410)
T ss_pred EECCCCCEEEEEECCCCEEEEECccc
Confidence 99999999999999999988876543
No 354
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.34 E-value=0.47 Score=39.05 Aligned_cols=146 Identities=6% Similarity=0.133 Sum_probs=86.7
Q ss_pred CCEEEEeeC----------CCcEEEEecCCC-----ceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCC
Q 023500 15 GKLLATASF----------DATTCIWEDVGG-----DYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 15 ~~~l~tg~~----------d~~i~lw~~~~~-----~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~ 79 (281)
.++++.|.. .|-|.+++.... +.+.++.. ...++|+++.-- .++++++.+ +.|.+|++...
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~-~~~lv~~~g--~~l~v~~l~~~ 117 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHST-EVKGPVTAICSF-NGRLVVAVG--NKLYVYDLDNS 117 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEE-TTEEEEEET--TEEEEEEEETT
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhh-CCEEEEeec--CEEEEEEccCc
Confidence 357776652 277889987663 44444443 357889888654 444333333 78999999876
Q ss_pred CeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEE
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV 159 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 159 (281)
........+..+. .+.++... +++++.|..-..+.++...... +.+..+.. ...+..+.++.|-++++.++
T Consensus 118 ~~l~~~~~~~~~~-~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~----~~l~~va~--d~~~~~v~~~~~l~d~~~~i 188 (321)
T PF03178_consen 118 KTLLKKAFYDSPF-YITSLSVF--KNYILVGDAMKSVSLLRYDEEN----NKLILVAR--DYQPRWVTAAEFLVDEDTII 188 (321)
T ss_dssp SSEEEEEEE-BSS-SEEEEEEE--TTEEEEEESSSSEEEEEEETTT----E-EEEEEE--ESS-BEEEEEEEE-SSSEEE
T ss_pred ccchhhheecceE-EEEEEecc--ccEEEEEEcccCEEEEEEEccC----CEEEEEEe--cCCCccEEEEEEecCCcEEE
Confidence 6333333333322 45555444 5588888877888777443311 11222221 12345688888886667999
Q ss_pred EeeCCCcEEEEeCC
Q 023500 160 SCSDDLTIKIWGAD 173 (281)
Q Consensus 160 s~~~d~~i~~w~~~ 173 (281)
.++.+|.+.++...
T Consensus 189 ~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 189 VGDKDGNLFVLRYN 202 (321)
T ss_dssp EEETTSEEEEEEE-
T ss_pred EEcCCCeEEEEEEC
Confidence 99999999998654
No 355
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.23 E-value=0.26 Score=42.33 Aligned_cols=138 Identities=19% Similarity=0.343 Sum_probs=71.9
Q ss_pred CCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCC--------CeeEEeE
Q 023500 15 GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG--------NEFECVS 86 (281)
Q Consensus 15 ~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~--------~~~~~~~ 86 (281)
|.+|+..+.+ .|.+||..+++. +..+.- .+|..|.|+++|.+++-.+.+ ++.+.+.... +......
T Consensus 117 G~LL~~~~~~-~i~~yDw~~~~~--i~~i~v--~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~ 190 (443)
T PF04053_consen 117 GNLLGVKSSD-FICFYDWETGKL--IRRIDV--SAVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFE 190 (443)
T ss_dssp SSSEEEEETT-EEEEE-TTT--E--EEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEE
T ss_pred CcEEEEECCC-CEEEEEhhHcce--eeEEec--CCCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceE
Confidence 7777766544 799999987753 555542 348999999999998888765 6677765322 0000112
Q ss_pred eecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCc
Q 023500 87 VLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLT 166 (281)
Q Consensus 87 ~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~ 166 (281)
.+..-...|.+..|..+ ..+++... .++.+ +. + ..-.+..+ ..++.-+.+.+....+....+|+.
T Consensus 191 ~~~E~~~~IkSg~W~~d-~fiYtT~~--~lkYl-~~-G---e~~~i~~l-------d~~~yllgy~~~~~~ly~~Dr~~~ 255 (443)
T PF04053_consen 191 LIHEISERIKSGCWVED-CFIYTTSN--HLKYL-VN-G---ETGIIAHL-------DKPLYLLGYLPKENRLYLIDRDGN 255 (443)
T ss_dssp EEEEE-S--SEEEEETT-EEEEE-TT--EEEEE-ET-T---EEEEEEE--------SS--EEEEEETTTTEEEEE-TT--
T ss_pred EEEEecceeEEEEEEcC-EEEEEcCC--eEEEE-Ec-C---CcceEEEc-------CCceEEEEEEccCCEEEEEECCCC
Confidence 22222456888888877 44555332 77664 11 1 11112222 245667778887778888999998
Q ss_pred EEEEeCC
Q 023500 167 IKIWGAD 173 (281)
Q Consensus 167 i~~w~~~ 173 (281)
+..+.++
T Consensus 256 v~~~~ld 262 (443)
T PF04053_consen 256 VISYELD 262 (443)
T ss_dssp EEEEE--
T ss_pred EEEEEEC
Confidence 8888654
No 356
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.23 E-value=0.49 Score=38.18 Aligned_cols=99 Identities=13% Similarity=0.151 Sum_probs=62.4
Q ss_pred EEEEcC-CCCEEEEeeCCC-cEEEEecCCCceeeeeeecCCCCCee--EEEEcCCCCEEEEe-----cCCCcEEEEEecC
Q 023500 8 SCAWSP-SGKLLATASFDA-TTCIWEDVGGDYECVATLEGHENEVK--SVSWNASGTLLATC-----GRDKSVWIWEVMP 78 (281)
Q Consensus 8 ~~~~~~-~~~~l~tg~~d~-~i~lw~~~~~~~~~~~~~~~h~~~v~--~v~~~~~~~~l~s~-----~~d~~v~~w~~~~ 78 (281)
.++.+| .+..++.+---| -..+||..+++. ...+....+.-+ =..|+|||++|++. ...|.|-|||..
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~--~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~- 85 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQL--LQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA- 85 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCce--eeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc-
Confidence 467788 445566665555 356777766643 222222222111 14689999999875 345799999986
Q ss_pred CCeeEEeEeecCCccceeEEEecCCCCeEEEE
Q 023500 79 GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSC 110 (281)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~ 110 (281)
..+..+..+..|.-.-..+.+.|++..|+.+
T Consensus 86 -~~~~ri~E~~s~GIGPHel~l~pDG~tLvVA 116 (305)
T PF07433_consen 86 -RGYRRIGEFPSHGIGPHELLLMPDGETLVVA 116 (305)
T ss_pred -CCcEEEeEecCCCcChhhEEEcCCCCEEEEE
Confidence 3345566677766556677899999776663
No 357
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.18 E-value=0.6 Score=39.29 Aligned_cols=104 Identities=16% Similarity=0.265 Sum_probs=56.4
Q ss_pred ceeEEEEcCCCCEEEEee-----------CCC-cEEEEecCC--CceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCc
Q 023500 5 TVRSCAWSPSGKLLATAS-----------FDA-TTCIWEDVG--GDYECVATLEGHENEVKSVSWNASGTLLATCGRDKS 70 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~-----------~d~-~i~lw~~~~--~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~ 70 (281)
....++|.++|+++++-. ..+ .|.+++..+ +.......+-..-.....+++.++| ++++ ... .
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~-~ 91 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPP-D 91 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCC-e
Confidence 345789999999887642 223 676776532 2222223333223345788998988 5554 333 3
Q ss_pred EEEE-EecCCC----eeE-EeEeecC----CccceeEEEecCCCCeEEEEe
Q 023500 71 VWIW-EVMPGN----EFE-CVSVLQG----HAQDVKMVQWHPTMDVLFSCS 111 (281)
Q Consensus 71 v~~w-~~~~~~----~~~-~~~~~~~----~~~~v~~v~~~p~~~~l~s~s 111 (281)
|..+ +..... +.+ .+..+.. +......+.|.|++.++++.+
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 3333 332111 111 1122222 134477899999998777655
No 358
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.16 E-value=0.26 Score=43.93 Aligned_cols=106 Identities=15% Similarity=0.351 Sum_probs=69.3
Q ss_pred cCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEE--cCCCCEEEEecCCCcEEEEEecC------CCeeE
Q 023500 12 SPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSW--NASGTLLATCGRDKSVWIWEVMP------GNEFE 83 (281)
Q Consensus 12 ~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~~~l~s~~~d~~v~~w~~~~------~~~~~ 83 (281)
+.-++..+.-+.-..+.|||...+..+--..+ ...+.|.+++| .|+|+.+++.|..+.|.++.-.. +..+.
T Consensus 38 ss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~ 116 (631)
T PF12234_consen 38 SSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWA 116 (631)
T ss_pred cccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccc
Confidence 33344333333334789999877765444455 35788999999 46899999999999999996532 11222
Q ss_pred EeEe--ecCCc-cceeEEEecCCCCeEEEEecCCeEEEEe
Q 023500 84 CVSV--LQGHA-QDVKMVQWHPTMDVLFSCSYDNTIKVWW 120 (281)
Q Consensus 84 ~~~~--~~~~~-~~v~~v~~~p~~~~l~s~s~d~~v~~w~ 120 (281)
.++. +..|. .+|....|.++|.+++++ ++.+.|++
T Consensus 117 ~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~d 154 (631)
T PF12234_consen 117 PIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFD 154 (631)
T ss_pred eeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEEC
Confidence 2222 23333 568899999998877763 56777764
No 359
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.15 E-value=0.45 Score=36.98 Aligned_cols=107 Identities=12% Similarity=0.042 Sum_probs=63.3
Q ss_pred CCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCC-c
Q 023500 14 SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGH-A 92 (281)
Q Consensus 14 ~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~-~ 92 (281)
++..+.+++.++.|..||..+++......+. +.+.... ...+..++.+..|+.+..+|...++........... .
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~---~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~ 110 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLP---GPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA 110 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECS---SCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecc---cccccee-eecccccccccceeeeEecccCCcceeeeecccccccc
Confidence 5666667789999999998888654434432 2221111 224556666667789999998777654332111110 1
Q ss_pred cceeEEEecCCCCeEEEEecCCeEEEEeCCCC
Q 023500 93 QDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDT 124 (281)
Q Consensus 93 ~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~ 124 (281)
...........++.++.+..++.+..++..+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG 142 (238)
T PF13360_consen 111 GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTG 142 (238)
T ss_dssp STB--SEEEEETTEEEEEETCSEEEEEETTTT
T ss_pred ccccccCceEecCEEEEEeccCcEEEEecCCC
Confidence 11122222233677888888999999987765
No 360
>PHA02713 hypothetical protein; Provisional
Probab=96.03 E-value=0.6 Score=41.67 Aligned_cols=63 Identities=5% Similarity=0.038 Sum_probs=36.3
Q ss_pred CCCEEEEeeCC------CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCC-----cEEEEEecC
Q 023500 14 SGKLLATASFD------ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDK-----SVWIWEVMP 78 (281)
Q Consensus 14 ~~~~l~tg~~d------~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~-----~v~~w~~~~ 78 (281)
++.+++.||.+ ..+..||+.++.+..+..+.........+ .-+|...+.||.++ ++..||...
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~--~~~g~IYviGG~~~~~~~~sve~Ydp~~ 376 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA--VIDDTIYAIGGQNGTNVERTIECYTMGD 376 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE--EECCEEEEECCcCCCCCCceEEEEECCC
Confidence 56777888854 23667887777665444433222222122 23667778888764 467787653
No 361
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.91 E-value=0.51 Score=42.18 Aligned_cols=147 Identities=15% Similarity=0.251 Sum_probs=77.4
Q ss_pred CCCEEEEeeCC-C-----cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCc-----EEEEEecCCCee
Q 023500 14 SGKLLATASFD-A-----TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKS-----VWIWEVMPGNEF 82 (281)
Q Consensus 14 ~~~~l~tg~~d-~-----~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~-----v~~w~~~~~~~~ 82 (281)
.+.++++||.| | ++..||+.++++..+..+.......-... -+|...+.||.||. +-.||... +++
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~-~~W 408 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVT-NKW 408 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCC-Ccc
Confidence 46788999999 3 46788888887766666554433332222 26778899999864 44455432 222
Q ss_pred EEeEeecCCccceeEEEecCCCCeEEEEecCCe------EEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCC
Q 023500 83 ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNT------IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD 156 (281)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~------v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 156 (281)
..+..........-. -.-.+.++++|+.++. +..+|.. .+.|+.+........+|. ++. -++.
T Consensus 409 ~~va~m~~~r~~~gv--~~~~g~iYi~GG~~~~~~~l~sve~YDP~---t~~W~~~~~M~~~R~~~g-----~a~-~~~~ 477 (571)
T KOG4441|consen 409 TPVAPMLTRRSGHGV--AVLGGKLYIIGGGDGSSNCLNSVECYDPE---TNTWTLIAPMNTRRSGFG-----VAV-LNGK 477 (571)
T ss_pred cccCCCCcceeeeEE--EEECCEEEEEcCcCCCccccceEEEEcCC---CCceeecCCcccccccce-----EEE-ECCE
Confidence 222111111111111 1224567788886663 4555443 344655554443222222 221 2456
Q ss_pred EEEEeeCCCc-----EEEEeCCc
Q 023500 157 KLVSCSDDLT-----IKIWGADI 174 (281)
Q Consensus 157 ~l~s~~~d~~-----i~~w~~~~ 174 (281)
..+.|+.|+. +..||...
T Consensus 478 iYvvGG~~~~~~~~~VE~ydp~~ 500 (571)
T KOG4441|consen 478 IYVVGGFDGTSALSSVERYDPET 500 (571)
T ss_pred EEEECCccCCCccceEEEEcCCC
Confidence 7777777762 55566543
No 362
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.77 E-value=0.77 Score=36.60 Aligned_cols=169 Identities=14% Similarity=0.201 Sum_probs=98.1
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeE
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE 83 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~ 83 (281)
..|..+.|+|+.+.|.+..+...-.++=...++..-...+.+..+ -..|.+..++.+.++-=.++.+.++.+.......
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~D-pE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~ 164 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSD-PETIEYIGGNQFVIVDERDRALYLFTVDADTTVI 164 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCC-hhHeEEecCCEEEEEehhcceEEEEEEcCCccEE
Confidence 348899999998877666655555565444555433333444322 2456777777777777778888888776543211
Q ss_pred Ee-------EeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeee-eeeeccCCccccEEEEEEccC-
Q 023500 84 CV-------SVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQ-TISESNNGHSSTIWALSFNAK- 154 (281)
Q Consensus 84 ~~-------~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~- 154 (281)
.. ............++|.|....++.+-+-.-+.|+.+....+.-..... .......-.-..|..+.|++.
T Consensus 165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~ 244 (316)
T COG3204 165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAIT 244 (316)
T ss_pred eccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCC
Confidence 11 111222556789999999999999888888877766543211000000 000000001233667788764
Q ss_pred CCEEEEeeCCCcEEEEeCC
Q 023500 155 GDKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 155 ~~~l~s~~~d~~i~~w~~~ 173 (281)
+.+|+-+..++.+...|.+
T Consensus 245 ~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 245 NSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred CcEEEEecCCceEEEEecC
Confidence 4566666667776666554
No 363
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.75 E-value=0.07 Score=49.35 Aligned_cols=71 Identities=21% Similarity=0.374 Sum_probs=51.8
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeE---EEEcCCCCEEEEecCCCcEEEEEec
Q 023500 3 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKS---VSWNASGTLLATCGRDKSVWIWEVM 77 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~---v~~~~~~~~l~s~~~d~~v~~w~~~ 77 (281)
+.+|++++|+.+|++++.|-.+|.|.+||...++. ++.+..|..+... +.+..++..++++..-|. +|.+.
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~--l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI--LKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred CCcceeeEecCCCceeccccCCCcEEEEEccCCcc--eeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 36899999999999999999999999999877653 4444444444333 344445567888877776 67764
No 364
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.70 E-value=1.1 Score=38.01 Aligned_cols=180 Identities=10% Similarity=0.100 Sum_probs=83.3
Q ss_pred EEEEecCCCcEEEEEecCCCeeEEeEeecC---Cc-cceeEEEecC--CCCeEEEEecCCeEEEEeCCCCCCCCceeeee
Q 023500 61 LLATCGRDKSVWIWEVMPGNEFECVSVLQG---HA-QDVKMVQWHP--TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQT 134 (281)
Q Consensus 61 ~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~---~~-~~v~~v~~~p--~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~ 134 (281)
.++.++.++.+...|..+++.......... +. .....+.-+| .+..++.++.++.+...|..+.. ..|+. .
T Consensus 207 ~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~-~~W~~--~ 283 (394)
T PRK11138 207 GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ-IVWKR--E 283 (394)
T ss_pred EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC-EEEee--c
Confidence 455566677777777765543211110000 00 0001111123 24566777788988888776542 11211 1
Q ss_pred eeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeec
Q 023500 135 ISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASG 214 (281)
Q Consensus 135 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 214 (281)
+ +. ...+. ..+..++.++.+|.+..+|.+.++........ .......++. .++.+..+
T Consensus 284 ~-----~~---~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~-------~~~~~~sp~v-----~~g~l~v~ 341 (394)
T PRK11138 284 Y-----GS---VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDL-------LHRLLTAPVL-----YNGYLVVG 341 (394)
T ss_pred C-----CC---ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEccccc-------CCCcccCCEE-----ECCEEEEE
Confidence 1 10 00111 23456777788888888887654322111000 0000011111 25677778
Q ss_pred CCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeE-EEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 215 AADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNS-VQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 215 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
..++.+..++...+ .. +.. .......+.+ -.. . +.. |..++.||.|..+++
T Consensus 342 ~~~G~l~~ld~~tG-----~~---~~~-~~~~~~~~~s~P~~-~-~~~-l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 342 DSEGYLHWINREDG-----RF---VAQ-QKVDSSGFLSEPVV-A-DDK-LLIQARDGTVYAITR 393 (394)
T ss_pred eCCCEEEEEECCCC-----CE---EEE-EEcCCCcceeCCEE-E-CCE-EEEEeCCceEEEEeC
Confidence 88888888755432 11 111 1111112221 112 2 334 446788999887764
No 365
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.68 E-value=0.84 Score=39.97 Aligned_cols=118 Identities=18% Similarity=0.280 Sum_probs=65.0
Q ss_pred CCCeeEEEEcCCC----CEEEEecCCCcEEEEEecCCCee--EEe----EeecCCcc-ceeEEEecCCCCeEEEEecCCe
Q 023500 47 ENEVKSVSWNASG----TLLATCGRDKSVWIWEVMPGNEF--ECV----SVLQGHAQ-DVKMVQWHPTMDVLFSCSYDNT 115 (281)
Q Consensus 47 ~~~v~~v~~~~~~----~~l~s~~~d~~v~~w~~~~~~~~--~~~----~~~~~~~~-~v~~v~~~p~~~~l~s~s~d~~ 115 (281)
=+.|..+.|.|-+ ..|++.-.-+.|.||-+...... +.. ..+...-+ --..+-|||....|+.-.....
T Consensus 56 FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv 135 (671)
T PF15390_consen 56 FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV 135 (671)
T ss_pred cceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce
Confidence 3568899998852 35677777899999998743211 111 11111101 1135679999887654443333
Q ss_pred EEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee-CCCcEEEEeC
Q 023500 116 IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS-DDLTIKIWGA 172 (281)
Q Consensus 116 v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~~w~~ 172 (281)
--+..+.... .+....+ ...+.|.|.+|.+||..|+.+- ..-.-.+||-
T Consensus 136 SV~~sV~~d~---srVkaDi-----~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 136 SVLPSVHCDS---SRVKADI-----KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred eEeeeeeeCC---ceEEEec-----cCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 2233332211 1111112 2347799999999998766543 3445567874
No 366
>PHA02713 hypothetical protein; Provisional
Probab=95.44 E-value=0.56 Score=41.88 Aligned_cols=147 Identities=9% Similarity=0.116 Sum_probs=74.5
Q ss_pred CCCEEEEeeCCC-----cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCC-------------------
Q 023500 14 SGKLLATASFDA-----TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDK------------------- 69 (281)
Q Consensus 14 ~~~~l~tg~~d~-----~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~------------------- 69 (281)
+|++.+.||.++ ++..||+.++.+..+..+.........+. -+|...+.||.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccc
Confidence 678888898764 37789988877765544432222222222 2677777787653
Q ss_pred ----cEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecC------CeEEEEeCCCCCCCCceeeeeeeecc
Q 023500 70 ----SVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD------NTIKVWWAEDTDSDNWHCVQTISESN 139 (281)
Q Consensus 70 ----~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d------~~v~~w~~~~~~~~~~~~~~~~~~~~ 139 (281)
++..||.... .+..+..+.........+ .-++.+++.|+.+ ..+..||.+. ...|..+..+...
T Consensus 429 ~~~~~ve~YDP~td-~W~~v~~m~~~r~~~~~~--~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~--~~~W~~~~~m~~~- 502 (557)
T PHA02713 429 HSSNKVIRYDTVNN-IWETLPNFWTGTIRPGVV--SHKDDIYVVCDIKDEKNVKTCIFRYNTNT--YNGWELITTTESR- 502 (557)
T ss_pred cccceEEEECCCCC-eEeecCCCCcccccCcEE--EECCEEEEEeCCCCCCccceeEEEecCCC--CCCeeEccccCcc-
Confidence 3555655432 232222221111111111 1234566666654 2356676553 1246555444321
Q ss_pred CCccccEEEEEEccCCCEEEEeeCCC--cEEEEeCC
Q 023500 140 NGHSSTIWALSFNAKGDKLVSCSDDL--TIKIWGAD 173 (281)
Q Consensus 140 ~~h~~~v~~~~~~~~~~~l~s~~~d~--~i~~w~~~ 173 (281)
+.....+.+ ++...+.|+.|+ .+..||..
T Consensus 503 ---r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~ 533 (557)
T PHA02713 503 ---LSALHTILH--DNTIMMLHCYESYMLQDTFNVY 533 (557)
T ss_pred ---cccceeEEE--CCEEEEEeeecceeehhhcCcc
Confidence 122222222 567888888888 55556554
No 367
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=95.37 E-value=1.5 Score=37.25 Aligned_cols=160 Identities=13% Similarity=0.135 Sum_probs=86.9
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecC------CCCCeeEEEEcC-----CC---CEEEEecCC
Q 023500 3 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEG------HENEVKSVSWNA-----SG---TLLATCGRD 68 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~------h~~~v~~v~~~~-----~~---~~l~s~~~d 68 (281)
+++|++++.+ +=-++|.|..+|.+.|.|..+.....-..+.. ....++++.|.. |+ -.|+.|-..
T Consensus 86 ~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~ 164 (395)
T PF08596_consen 86 QGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNS 164 (395)
T ss_dssp S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETT
T ss_pred CCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCC
Confidence 5789999987 66789999999999999987665433333333 334678888852 22 367888888
Q ss_pred CcEEEEEecCC--Cee--EEeEeecCCccceeEEE-ecCC--------------------CCeEEEEecCCeEEEEeCCC
Q 023500 69 KSVWIWEVMPG--NEF--ECVSVLQGHAQDVKMVQ-WHPT--------------------MDVLFSCSYDNTIKVWWAED 123 (281)
Q Consensus 69 ~~v~~w~~~~~--~~~--~~~~~~~~~~~~v~~v~-~~p~--------------------~~~l~s~s~d~~v~~w~~~~ 123 (281)
|++.+|.+... ..+ +.......+.+.+..+. ++.+ -+.++....+..+|++....
T Consensus 165 G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~ 244 (395)
T PF08596_consen 165 GNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPK 244 (395)
T ss_dssp SEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT-
T ss_pred CCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCC
Confidence 99999998632 212 12222223445554443 3211 12344555688889985543
Q ss_pred CCCCCceeeeeeeeccCCccccEEEEEEc-----cCCCEEEEeeCCCcEEEEeC
Q 023500 124 TDSDNWHCVQTISESNNGHSSTIWALSFN-----AKGDKLVSCSDDLTIKIWGA 172 (281)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----~~~~~l~s~~~d~~i~~w~~ 172 (281)
.. ...+.. .....+..+.+- ..+..|++-..+|.+++|.+
T Consensus 245 ~k-----~~~K~~----~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SL 289 (395)
T PF08596_consen 245 SK-----GAHKSF----DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSL 289 (395)
T ss_dssp -------EEEEE-----SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEET
T ss_pred Cc-----ccceee----ccccccceEEEEeecccCCceEEEEEECCCcEEEEEC
Confidence 22 111111 111223334442 24557888889999999976
No 368
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.34 E-value=1.4 Score=39.53 Aligned_cols=118 Identities=12% Similarity=0.266 Sum_probs=72.7
Q ss_pred CeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEec--CCCCeEEEEecCCeEEEEeCCCC--
Q 023500 49 EVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWH--PTMDVLFSCSYDNTIKVWWAEDT-- 124 (281)
Q Consensus 49 ~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~--p~~~~l~s~s~d~~v~~w~~~~~-- 124 (281)
....+.-+.-++..+.-+...++.+||...+. .+....+ ...+.|..+.|. |+++.+++.+..+.|.++--.+-
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~-lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGV-LEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcE-EEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 33444444445555555556689999997554 3333334 345679999885 67889999999999999854211
Q ss_pred --CCCCceeeeeeeeccCCc-cccEEEEEEccCCCEEEEeeCCCcEEEEeC
Q 023500 125 --DSDNWHCVQTISESNNGH-SSTIWALSFNAKGDKLVSCSDDLTIKIWGA 172 (281)
Q Consensus 125 --~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~ 172 (281)
....|..++.+... .| +.+|....|.++|..++.++ ..+.++|-
T Consensus 109 ~~~~p~w~~i~~i~i~--~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDIS--SHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEee--cCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 12234444444221 22 24678899999986555443 24777764
No 369
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.27 E-value=0.85 Score=36.13 Aligned_cols=110 Identities=15% Similarity=0.191 Sum_probs=64.6
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEe-cCCCceeeeee-ecCCCCCeeEEEEcCCCCEEEEec---CCCcEEEEEecCC
Q 023500 5 TVRSCAWSPSGKLLATASFDATTCIWE-DVGGDYECVAT-LEGHENEVKSVSWNASGTLLATCG---RDKSVWIWEVMPG 79 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~~i~lw~-~~~~~~~~~~~-~~~h~~~v~~v~~~~~~~~l~s~~---~d~~v~~w~~~~~ 79 (281)
.++.-.|++++.+.+....+...+++. ...+....+.. ..+-.+.|..+++||||.+++.-. .++.|.+=.+...
T Consensus 67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~ 146 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRD 146 (253)
T ss_pred ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeC
Confidence 345557888888777666666666663 22222221111 111112899999999999865433 4577777766543
Q ss_pred Cee------EEeEeecCCccceeEEEecCCCCeEEEEecCC
Q 023500 80 NEF------ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN 114 (281)
Q Consensus 80 ~~~------~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~ 114 (281)
... ............+..+.|.++..+++.+...+
T Consensus 147 ~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 147 GDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred CCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCC
Confidence 322 11122223345789999999988766555443
No 370
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.12 E-value=1.3 Score=35.32 Aligned_cols=148 Identities=11% Similarity=0.126 Sum_probs=82.1
Q ss_pred CCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeE------
Q 023500 13 PSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVS------ 86 (281)
Q Consensus 13 ~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~------ 86 (281)
..++.|+.|.++| +.+++..... ...... +...|..+...|.-+.|+.-+ |+.+.++++..-.......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~-~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPS-KPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCc-cceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccc
Confidence 4678889999888 7787762111 112221 234489999888766665554 3999999986433211000
Q ss_pred -----eecCCccceeEEE--ecCCCCeEEEEecCCeEEEEeCCCCCCCCc-eeeeeeeeccCCccccEEEEEEccCCCEE
Q 023500 87 -----VLQGHAQDVKMVQ--WHPTMDVLFSCSYDNTIKVWWAEDTDSDNW-HCVQTISESNNGHSSTIWALSFNAKGDKL 158 (281)
Q Consensus 87 -----~~~~~~~~v~~v~--~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 158 (281)
........+...+ -.+.+...+.+....+|.+|...... ..+ +...++. -+..+.+++|. ++.+
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~-~~f~~~~ke~~-----lp~~~~~i~~~--~~~i 151 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPR-NSFSKLLKEIS-----LPDPPSSIAFL--GNKI 151 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCc-ccccceeEEEE-----cCCCcEEEEEe--CCEE
Confidence 0011122233333 12334444455556688888765531 112 2233332 23667888888 4467
Q ss_pred EEeeCCCcEEEEeCCc
Q 023500 159 VSCSDDLTIKIWGADI 174 (281)
Q Consensus 159 ~s~~~d~~i~~w~~~~ 174 (281)
+.|..++ ..+.|+..
T Consensus 152 ~v~~~~~-f~~idl~~ 166 (275)
T PF00780_consen 152 CVGTSKG-FYLIDLNT 166 (275)
T ss_pred EEEeCCc-eEEEecCC
Confidence 7777665 66677663
No 371
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=94.93 E-value=1.5 Score=40.47 Aligned_cols=135 Identities=10% Similarity=0.047 Sum_probs=79.6
Q ss_pred CCCcEEEEecCCCceeeeeeecCCCCC-eeEEEEcCC-------CCEEEEecCCCcEEEEEecCCCeeEEeEe-e--cCC
Q 023500 23 FDATTCIWEDVGGDYECVATLEGHENE-VKSVSWNAS-------GTLLATCGRDKSVWIWEVMPGNEFECVSV-L--QGH 91 (281)
Q Consensus 23 ~d~~i~lw~~~~~~~~~~~~~~~h~~~-v~~v~~~~~-------~~~l~s~~~d~~v~~w~~~~~~~~~~~~~-~--~~~ 91 (281)
..+.|.-.|+..++. +..++.|... |..+ .|+ ...-+.|=.++.+..||.+.... ..+.. . ...
T Consensus 502 ~~~~ly~mDLe~GKV--V~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~-k~v~~~~k~Y~~ 576 (794)
T PF08553_consen 502 NPNKLYKMDLERGKV--VEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN-KLVDSQSKQYSS 576 (794)
T ss_pred CCCceEEEecCCCcE--EEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCC-ceeecccccccc
Confidence 345666667777653 5566655543 5444 343 23456676778899999875432 11110 1 112
Q ss_pred ccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEe
Q 023500 92 AQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWG 171 (281)
Q Consensus 92 ~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~ 171 (281)
....+|++-..+ .+||.||.+|.||+|+-.. .+ ..+.. .+-..+|..|+.+.||++++.-+. -++-+++
T Consensus 577 ~~~Fs~~aTt~~-G~iavgs~~G~IRLyd~~g-----~~-AKT~l---p~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~ 645 (794)
T PF08553_consen 577 KNNFSCFATTED-GYIAVGSNKGDIRLYDRLG-----KR-AKTAL---PGLGDPIIGIDVTADGKWILATCK-TYLLLID 645 (794)
T ss_pred CCCceEEEecCC-ceEEEEeCCCcEEeecccc-----hh-hhhcC---CCCCCCeeEEEecCCCcEEEEeec-ceEEEEE
Confidence 334556555544 3789999999999996221 11 11121 133478999999999997665543 3577777
Q ss_pred CC
Q 023500 172 AD 173 (281)
Q Consensus 172 ~~ 173 (281)
+.
T Consensus 646 t~ 647 (794)
T PF08553_consen 646 TL 647 (794)
T ss_pred Ee
Confidence 53
No 372
>PRK13684 Ycf48-like protein; Provisional
Probab=94.72 E-value=2.1 Score=35.54 Aligned_cols=155 Identities=13% Similarity=0.172 Sum_probs=82.4
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEE-EEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCee
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTC-IWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF 82 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~-lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~ 82 (281)
..+..+.+.|++.+++.|. .|.+. .++.....+..+. .+-...++++.+.|+++.++.+ ..|.+++=+...+..+
T Consensus 173 g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~--~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQ--RNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred ceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEee--CCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 3577889999988877655 44432 2332223343322 2345688999999988876664 4566543222233333
Q ss_pred EEeEee-cCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 83 ECVSVL-QGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 83 ~~~~~~-~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
...... ......+..+.+.|++.. +.++.+|.+..= .+ .-..|+.+... .+-+...+.+.|..+++.++ .
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~-~~~G~~G~v~~S-~d--~G~tW~~~~~~----~~~~~~~~~~~~~~~~~~~~-~ 319 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEI-WAGGGNGTLLVS-KD--GGKTWEKDPVG----EEVPSNFYKIVFLDPEKGFV-L 319 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCE-EEEcCCCeEEEe-CC--CCCCCeECCcC----CCCCcceEEEEEeCCCceEE-E
Confidence 321111 111234678888887664 455667766542 11 11234332111 11123566777776665555 4
Q ss_pred eCCCcEEEEe
Q 023500 162 SDDLTIKIWG 171 (281)
Q Consensus 162 ~~d~~i~~w~ 171 (281)
+..|.|--|+
T Consensus 320 G~~G~il~~~ 329 (334)
T PRK13684 320 GQRGVLLRYV 329 (334)
T ss_pred CCCceEEEec
Confidence 5677776653
No 373
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=94.71 E-value=1.7 Score=34.32 Aligned_cols=130 Identities=16% Similarity=0.234 Sum_probs=67.7
Q ss_pred eeecCCCCCeeEEEEcCCCC-EEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEE
Q 023500 41 ATLEGHENEVKSVSWNASGT-LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 119 (281)
Q Consensus 41 ~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w 119 (281)
+.+.+-...+..++|+|+.. +++.....+.|.-.+. .++.. ....+.+ ......|++..++.++++.-.++.+.+.
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vl-r~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVL-RRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIF 91 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EE-EEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEE-EEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEE
Confidence 34555566799999999755 5555666666655554 23322 1222333 3457888888777666665457888888
Q ss_pred eCCCCCC-CCceeeeeeeecc-CCccccEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 023500 120 WAEDTDS-DNWHCVQTISESN-NGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 120 ~~~~~~~-~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~ 173 (281)
++..... ......+.+.... ..+...+-.++|++.+..|+.+-...-.++|.++
T Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~ 147 (248)
T PF06977_consen 92 TIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVN 147 (248)
T ss_dssp EE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred EEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEc
Confidence 7743221 1111122222111 1244557789999987777766666566677554
No 374
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.56 E-value=1.3 Score=36.60 Aligned_cols=109 Identities=20% Similarity=0.298 Sum_probs=58.2
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecCCCce-eeeeee----cCCCCCeeEEEEcCC----CCEEEEecC------CC
Q 023500 5 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDY-ECVATL----EGHENEVKSVSWNAS----GTLLATCGR------DK 69 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~-~~~~~~----~~h~~~v~~v~~~~~----~~~l~s~~~------d~ 69 (281)
.-+.++|.|+|++|++ ...|.|.+++. .+.. ..+..+ .........++++|+ +.+.+.... +.
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~-~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDK-DGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEET-TTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeC-CCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3468999999999876 55999999983 3332 223222 234467789999994 333333331 12
Q ss_pred --cEEEEEecCC-Cee---E-EeEeecC---CccceeEEEecCCCCeEEEEecCCe
Q 023500 70 --SVWIWEVMPG-NEF---E-CVSVLQG---HAQDVKMVQWHPTMDVLFSCSYDNT 115 (281)
Q Consensus 70 --~v~~w~~~~~-~~~---~-~~~~~~~---~~~~v~~v~~~p~~~~l~s~s~d~~ 115 (281)
.|.-|..... ... + .+..+.. .......+.|.|++.++++.+..+.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence 3333444333 111 1 1111121 2334567999999987777665543
No 375
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.54 E-value=1.7 Score=37.69 Aligned_cols=143 Identities=12% Similarity=0.066 Sum_probs=80.6
Q ss_pred EEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCC-------eEEEEecCCeEEEEeCCCCCCCCceeeeee
Q 023500 63 ATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD-------VLFSCSYDNTIKVWWAEDTDSDNWHCVQTI 135 (281)
Q Consensus 63 ~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-------~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~ 135 (281)
.+++.-..+.--|+..++ .+..+.-+.. |+-+.+.|+.. .-+.|=.|+.|.-||+.-.... .....+.
T Consensus 350 ~~~~~~~~l~klDIE~GK---IVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl~~~q~ 424 (644)
T KOG2395|consen 350 MDGGEQDKLYKLDIERGK---IVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KLAVVQS 424 (644)
T ss_pred eCCCCcCcceeeecccce---eeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-eeeeeec
Confidence 344444455555665553 3555665555 88888888743 1244556777777876532211 0000011
Q ss_pred eeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecC
Q 023500 136 SESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGA 215 (281)
Q Consensus 136 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 215 (281)
.+. .......|.+-..+| +++.|+.+|.||+||.-.. ...+.......+|..+..+.+|..+.+.
T Consensus 425 kqy--~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~------------~AKTAlPgLG~~I~hVdvtadGKwil~T 489 (644)
T KOG2395|consen 425 KQY--STKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGR------------RAKTALPGLGDAIKHVDVTADGKWILAT 489 (644)
T ss_pred ccc--ccccccceeeecCCc-eEEEeecCCcEEeehhhhh------------hhhhcccccCCceeeEEeeccCcEEEEe
Confidence 111 112234455554454 8999999999999986221 1111112346788888888888766666
Q ss_pred CCCcEEEEec
Q 023500 216 ADDSVQFFVE 225 (281)
Q Consensus 216 ~d~~~~~~~~ 225 (281)
-+..+.+.+.
T Consensus 490 c~tyLlLi~t 499 (644)
T KOG2395|consen 490 CKTYLLLIDT 499 (644)
T ss_pred cccEEEEEEE
Confidence 6777666643
No 376
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.52 E-value=0.18 Score=27.47 Aligned_cols=31 Identities=29% Similarity=0.415 Sum_probs=25.4
Q ss_pred CeeEEEEcCCCC--eeEEEeCCCCeEEEEEccc
Q 023500 249 DVNSVQWSPGER--RLLASASDDGMIKIWELAN 279 (281)
Q Consensus 249 ~v~~~~~~~~~~--~~~~s~~~Dg~v~iw~~~~ 279 (281)
.++++.|+|... .+|+-+-.-|.|.|+|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 578999998654 5788888889999999884
No 377
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.17 E-value=2.7 Score=38.63 Aligned_cols=76 Identities=32% Similarity=0.514 Sum_probs=52.2
Q ss_pred CCeeEEEEcCCCCEEEEecCCCcEEEEEecCC-----------CeeEEeEe-------ecCCccceeEEEecCCC---Ce
Q 023500 48 NEVKSVSWNASGTLLATCGRDKSVWIWEVMPG-----------NEFECVSV-------LQGHAQDVKMVQWHPTM---DV 106 (281)
Q Consensus 48 ~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~-----------~~~~~~~~-------~~~~~~~v~~v~~~p~~---~~ 106 (281)
-.|..|.+||+|++++-.|..+ |.|-.+... .+..|... ...+...|..+.|||.+ .+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 4578889999999998888754 555555321 01122211 12345678899999974 67
Q ss_pred EEEEecCCeEEEEeCCCC
Q 023500 107 LFSCSYDNTIKVWWAEDT 124 (281)
Q Consensus 107 l~s~s~d~~v~~w~~~~~ 124 (281)
|+.-..|+++++|++...
T Consensus 164 l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEecCCEEEEEecCCC
Confidence 888889999999998643
No 378
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.83 E-value=2.1 Score=35.51 Aligned_cols=51 Identities=18% Similarity=0.367 Sum_probs=32.8
Q ss_pred eEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEe----ecCCccceeEEEecCC
Q 023500 51 KSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSV----LQGHAQDVKMVQWHPT 103 (281)
Q Consensus 51 ~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~----~~~~~~~v~~v~~~p~ 103 (281)
+.++|.|+|+++++-- .|.|++.+ ..+.....+.. ..........++++|+
T Consensus 5 ~~~a~~pdG~l~v~e~-~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 5 RSMAFLPDGRLLVAER-SGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp EEEEEETTSCEEEEET-TTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred eEEEEeCCCcEEEEeC-CceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence 5799999998877654 89998888 33332122222 2234556789999995
No 379
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.81 E-value=0.26 Score=37.64 Aligned_cols=105 Identities=13% Similarity=0.083 Sum_probs=53.7
Q ss_pred CCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeec
Q 023500 59 GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISES 138 (281)
Q Consensus 59 ~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~ 138 (281)
+.-++.|+.|+.|.+|.......... ....+-....+.+.--.++.+..++++|+.|+.|.+.-.. .+ -.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d-~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k-----~~----g~ 139 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSD-RVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNK-----VL----GY 139 (238)
T ss_pred CceEEeecccceEEEecCCccchHHH-hhhcccccceeccccccccceeEEeccCCceeeeccccCc-----ee----ee
Confidence 45688899999999998652221100 0011111111222222334578899999999999654321 00 01
Q ss_pred cCCcc-ccEEEEEEccCCCEEEEe--eCCCcEEEEeCC
Q 023500 139 NNGHS-STIWALSFNAKGDKLVSC--SDDLTIKIWGAD 173 (281)
Q Consensus 139 ~~~h~-~~v~~~~~~~~~~~l~s~--~~d~~i~~w~~~ 173 (281)
...|. .+...+..+..++.++.. +.|..++.|+++
T Consensus 140 ~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 140 VGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred eccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 12343 333333344444555555 556666666553
No 380
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=93.56 E-value=3.9 Score=34.32 Aligned_cols=27 Identities=15% Similarity=0.298 Sum_probs=18.4
Q ss_pred EEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 252 SVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 252 ~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
...|+|+++.+|.++...|.-.||=+.
T Consensus 355 hp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 355 HPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp --EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred CCccCCCCCEEEEECCCCCCccEEEEe
Confidence 478999999998888889987777554
No 381
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=93.31 E-value=3.8 Score=33.48 Aligned_cols=230 Identities=13% Similarity=0.079 Sum_probs=105.4
Q ss_pred EcCCCC-EEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe-eEEeEee
Q 023500 11 WSPSGK-LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE-FECVSVL 88 (281)
Q Consensus 11 ~~~~~~-~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~-~~~~~~~ 88 (281)
|.++.. ++.+--..+.|.-|+..++.. ..+. +.+.+.++..-..+.+|+++.. -+.+++...+.. .......
T Consensus 32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~---~~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 32 WDPDRGALLWVDILGGRIHRLDPETGKK---RVFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred CcCCCCEEEEEeCCCCeEEEecCCcCce---EEEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecccc
Confidence 455544 333444445666666654432 1222 3344444444444555665543 345566643432 1111112
Q ss_pred cCC-ccceeEEEecCCCCeEEEEecC---------CeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEE
Q 023500 89 QGH-AQDVKMVQWHPTMDVLFSCSYD---------NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158 (281)
Q Consensus 89 ~~~-~~~v~~v~~~p~~~~l~s~s~d---------~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 158 (281)
.+. ...-+.+...|++.+.++.... ..-.+|.+.-.. . ..++ ...+-...+.++||||++.|
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g----~-~~~l---~~~~~~~~NGla~SpDg~tl 177 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDG----G-VVRL---LDDDLTIPNGLAFSPDGKTL 177 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCC----C-EEEe---ecCcEEecCceEECCCCCEE
Confidence 222 1334677788998877765540 111344333110 0 0111 11223445789999999877
Q ss_pred EEeeCC-CcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceee-ecCCCC-cEEEEecccCCCcCCcc
Q 023500 159 VSCSDD-LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIA-SGAADD-SVQFFVESKDDLIDGPS 235 (281)
Q Consensus 159 ~s~~~d-~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~-~~~~~~~~~~~~~~~~~ 235 (281)
+..... +.|.-|+.+... +...-+.............-.++.+.+|.+- ++..++ .+..|+...
T Consensus 178 y~aDT~~~~i~r~~~d~~~-----g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG-------- 244 (307)
T COG3386 178 YVADTPANRIHRYDLDPAT-----GPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDG-------- 244 (307)
T ss_pred EEEeCCCCeEEEEecCccc-----CccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCCC--------
Confidence 766543 566666554200 0000011111111122333344555565544 333333 677775431
Q ss_pred ceeeeeeccCCCCCeeEEEEcC-CCCeeEEEeCCC
Q 023500 236 YKMLLKKEKAHDMDVNSVQWSP-GERRLLASASDD 269 (281)
Q Consensus 236 ~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~s~~~D 269 (281)
.+..........+++++|-- +...|++|++..
T Consensus 245 --~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 245 --KLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred --cEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence 11122222225577788763 335677776665
No 382
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.23 E-value=1.2 Score=42.04 Aligned_cols=147 Identities=11% Similarity=-0.044 Sum_probs=86.0
Q ss_pred eeEEEEcCCCCEEE--EeeCCCcEEEEecCCCc------eeeee---eecCCCCCeeEEEEcCC-CCEEEEecCCCcEEE
Q 023500 6 VRSCAWSPSGKLLA--TASFDATTCIWEDVGGD------YECVA---TLEGHENEVKSVSWNAS-GTLLATCGRDKSVWI 73 (281)
Q Consensus 6 i~~~~~~~~~~~l~--tg~~d~~i~lw~~~~~~------~~~~~---~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~~ 73 (281)
|......+|++..+ ..+++-.|..||...-. ..+++ +......-..++.|+|. ....+....|+.|++
T Consensus 103 i~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V 182 (1405)
T KOG3630|consen 103 IVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRV 182 (1405)
T ss_pred ceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhh
Confidence 44556667776543 33444467788864321 11111 11112234467889995 445677788999998
Q ss_pred EEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEcc
Q 023500 74 WEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA 153 (281)
Q Consensus 74 w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 153 (281)
..+..... .... ..-....++++|+|.+..++.|-..|++.-|...-. ..+.+.... ..-...|.+++|-.
T Consensus 183 ~~~~~~~~--~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le---ik~~ip~Pp---~~e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 183 KSTKQLAQ--NVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE---IKSEIPEPP---VEENYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhh--hhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecccc---eeecccCCC---cCCCcceeEEEEec
Confidence 87643211 1111 123456799999999999999999999988854322 011111111 11146789999987
Q ss_pred CCCEEEEe
Q 023500 154 KGDKLVSC 161 (281)
Q Consensus 154 ~~~~l~s~ 161 (281)
...+++.-
T Consensus 254 t~eflvvy 261 (1405)
T KOG3630|consen 254 TQEFLVVY 261 (1405)
T ss_pred ceeEEEEe
Confidence 76665553
No 383
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.23 E-value=0.43 Score=25.99 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=25.4
Q ss_pred CCeeEEEEcCC-C--CEEEEecCCCcEEEEEecC
Q 023500 48 NEVKSVSWNAS-G--TLLATCGRDKSVWIWEVMP 78 (281)
Q Consensus 48 ~~v~~v~~~~~-~--~~l~s~~~d~~v~~w~~~~ 78 (281)
+.|.+++|+|. + .+|+-+-.-+.|-++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 46899999985 4 5888888888999999874
No 384
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=93.12 E-value=4.9 Score=34.16 Aligned_cols=150 Identities=10% Similarity=0.068 Sum_probs=73.5
Q ss_pred CCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcC--CCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCc
Q 023500 15 GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA--SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHA 92 (281)
Q Consensus 15 ~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~--~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~ 92 (281)
+..+..++.++.+.-+|..+++......+. +.+.+ +| .+..++.+..++.+..+|..+++....... ..
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~---~~~~s---sP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~---~~ 190 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVA---GEALS---RPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNL---DV 190 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCC---Cceec---CCEEECCEEEEECCCCEEEEEEccCCCEeeeecC---CC
Confidence 345556778888988998777643333322 22221 12 245566677788899899877764322211 00
Q ss_pred ccee-EEEecC--CCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCcc-ccEEEEEEcc--CCCEEEEeeCCCc
Q 023500 93 QDVK-MVQWHP--TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHS-STIWALSFNA--KGDKLVSCSDDLT 166 (281)
Q Consensus 93 ~~v~-~v~~~p--~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~--~~~~l~s~~~d~~ 166 (281)
.... ...-+| .+..++.++.++.+...+.++... .|+. .+......+. .....+.-+| .+..++.++.+|.
T Consensus 191 ~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~-~W~~--~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~ 267 (394)
T PRK11138 191 PSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQL-IWQQ--RISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGN 267 (394)
T ss_pred CcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChh-hhee--ccccCCCccchhcccccCCCcEEECCEEEEEEcCCe
Confidence 0000 000012 123566677788888777655421 1211 0100000000 0000011112 2456777778888
Q ss_pred EEEEeCCccc
Q 023500 167 IKIWGADITR 176 (281)
Q Consensus 167 i~~w~~~~~~ 176 (281)
+.-+|.+.++
T Consensus 268 l~ald~~tG~ 277 (394)
T PRK11138 268 LVALDLRSGQ 277 (394)
T ss_pred EEEEECCCCC
Confidence 8888876543
No 385
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=92.70 E-value=2.7 Score=31.10 Aligned_cols=29 Identities=14% Similarity=0.298 Sum_probs=24.3
Q ss_pred cceeEEEecCCC------CeEEEEecCCeEEEEeC
Q 023500 93 QDVKMVQWHPTM------DVLFSCSYDNTIKVWWA 121 (281)
Q Consensus 93 ~~v~~v~~~p~~------~~l~s~s~d~~v~~w~~ 121 (281)
..+..++|+|.| ++|+..+.++.|.+|..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~ 120 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGP 120 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEec
Confidence 478999999963 47899999999999944
No 386
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.46 E-value=3.6 Score=37.47 Aligned_cols=115 Identities=9% Similarity=0.039 Sum_probs=71.6
Q ss_pred eeEEEEcC--CCCEEEEeeCCCcEEEEecCC-------C----c-------eeeeeeecCCCCCeeEEEEc--CCCCEEE
Q 023500 6 VRSCAWSP--SGKLLATASFDATTCIWEDVG-------G----D-------YECVATLEGHENEVKSVSWN--ASGTLLA 63 (281)
Q Consensus 6 i~~~~~~~--~~~~l~tg~~d~~i~lw~~~~-------~----~-------~~~~~~~~~h~~~v~~v~~~--~~~~~l~ 63 (281)
|+.+...- ..++|+.|..||.+.+|.... . + ..+-..+. -...+++++++ ...++||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence 45454433 346889999999999995310 0 0 01112222 23478999998 6777888
Q ss_pred EecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCC---C---eEEEEecCCeEEEEeC
Q 023500 64 TCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTM---D---VLFSCSYDNTIKVWWA 121 (281)
Q Consensus 64 s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~---~---~l~s~s~d~~v~~w~~ 121 (281)
.++....|.||-+....+.........|...|-+|+|-++. . .+++++-.|.+-+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 88888888888654322111111111356678888887753 2 6788899998887766
No 387
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=92.27 E-value=5.4 Score=32.53 Aligned_cols=237 Identities=11% Similarity=0.144 Sum_probs=97.4
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCC-CeeEE
Q 023500 6 VRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG-NEFEC 84 (281)
Q Consensus 6 i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~-~~~~~ 84 (281)
...+.|.. .+.++.| ..+.|..-......++.+..-..-.+....+....++..++. +..+. +|....+ ..++.
T Consensus 64 l~~I~f~~-~~g~ivG-~~g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~-~~~G~--iy~T~DgG~tW~~ 138 (302)
T PF14870_consen 64 LNSISFDG-NEGWIVG-EPGLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELA-GDRGA--IYRTTDGGKTWQA 138 (302)
T ss_dssp EEEEEEET-TEEEEEE-ETTEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEE-ETT----EEEESSTTSSEEE
T ss_pred EEEEEecC-CceEEEc-CCceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEE-cCCCc--EEEeCCCCCCeeE
Confidence 44566653 3444444 445433322233334333211122333444444344433333 34454 3444443 44443
Q ss_pred eEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCC
Q 023500 85 VSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDD 164 (281)
Q Consensus 85 ~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 164 (281)
+. ..-...+..+.-.+++.+++.++......-|+.... .|+...+ .-..++.++.|.|++.+.+.. +.
T Consensus 139 ~~--~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~---~w~~~~r------~~~~riq~~gf~~~~~lw~~~-~G 206 (302)
T PF14870_consen 139 VV--SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT---TWQPHNR------NSSRRIQSMGFSPDGNLWMLA-RG 206 (302)
T ss_dssp EE---S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S---S-EEEE--------SSS-EEEEEE-TTS-EEEEE-TT
T ss_pred cc--cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCc---cceEEcc------CccceehhceecCCCCEEEEe-CC
Confidence 22 233455788888899988877766555567754322 2322221 224679999999998765544 78
Q ss_pred CcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeeeecc
Q 023500 165 LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEK 244 (281)
Q Consensus 165 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (281)
|.|++=+... ....|.....-.......+..+.+.+++.+-+++..+.+..-... +...+. .....
T Consensus 207 g~~~~s~~~~-------~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~Dg------GktW~~-~~~~~ 272 (302)
T PF14870_consen 207 GQIQFSDDPD-------DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVSTDG------GKTWQK-DRVGE 272 (302)
T ss_dssp TEEEEEE-TT-------EEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEESST------TSS-EE--GGGT
T ss_pred cEEEEccCCC-------CccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEEeCCC------CccceE-Ccccc
Confidence 8777654110 001111100000012334678888876655545555544332111 111111 11111
Q ss_pred CCCCCeeEEEEcCCCCeeEEEeCCCCeEEEE
Q 023500 245 AHDMDVNSVQWSPGERRLLASASDDGMIKIW 275 (281)
Q Consensus 245 ~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw 275 (281)
.-...++.+.|.++++. ++ .+.||.|.=|
T Consensus 273 ~~~~n~~~i~f~~~~~g-f~-lG~~G~ll~~ 301 (302)
T PF14870_consen 273 NVPSNLYRIVFVNPDKG-FV-LGQDGVLLRY 301 (302)
T ss_dssp TSSS---EEEEEETTEE-EE-E-STTEEEEE
T ss_pred CCCCceEEEEEcCCCce-EE-ECCCcEEEEe
Confidence 22345778888765543 43 4558876544
No 388
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=92.27 E-value=7 Score=33.86 Aligned_cols=55 Identities=16% Similarity=0.211 Sum_probs=37.1
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeec-----CCCCCeeEEEEcCCC
Q 023500 5 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLE-----GHENEVKSVSWNASG 59 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~-----~h~~~v~~v~~~~~~ 59 (281)
.-+.++|.|||++|++--..|.|++++..+.....+..+. .-.+....|+|+|+-
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 3467899999999987665688998876544322222111 125678899999873
No 389
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=91.97 E-value=7.3 Score=33.40 Aligned_cols=65 Identities=15% Similarity=0.307 Sum_probs=42.6
Q ss_pred EEEcCCCCEEEEeeCC----------C-cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEec
Q 023500 9 CAWSPSGKLLATASFD----------A-TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVM 77 (281)
Q Consensus 9 ~~~~~~~~~l~tg~~d----------~-~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~ 77 (281)
++.+|.|..+|....+ . .|.||+..+.... ...++. +.+.++.|+.+. .|+.-..||.++++|+.
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~ll~-~i~w~~--~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGKLLS-SIPWDS--GRIVGMGWTDDE-ELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCCEeE-EEEECC--CCEEEEEECCCC-eEEEEEcCCEEEEEeCC
Confidence 4667777666665444 1 4888876654322 223333 788899998754 45555688999999985
No 390
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.90 E-value=2.5 Score=36.68 Aligned_cols=108 Identities=9% Similarity=0.113 Sum_probs=68.1
Q ss_pred ceeEEEEcCCCCE-------EEEeeCCCcEEEEecCCCceeeeeeecCCC----CCeeEEEEcCCCCEEEEecCCCcEEE
Q 023500 5 TVRSCAWSPSGKL-------LATASFDATTCIWEDVGGDYECVATLEGHE----NEVKSVSWNASGTLLATCGRDKSVWI 73 (281)
Q Consensus 5 ~i~~~~~~~~~~~-------l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~----~~v~~v~~~~~~~~l~s~~~d~~v~~ 73 (281)
.|+-+.+.|+.+. =+.|-.|+.|.-||+.-.....+...++|. ....|.+-. ...+|+.||.+|.||+
T Consensus 377 di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT-~sG~IvvgS~~GdIRL 455 (644)
T KOG2395|consen 377 DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATT-ESGYIVVGSLKGDIRL 455 (644)
T ss_pred CcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeec-CCceEEEeecCCcEEe
Confidence 3677778887541 135778888999997532221122223332 233454433 3458999999999999
Q ss_pred EEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeE
Q 023500 74 WEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 116 (281)
Q Consensus 74 w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v 116 (281)
+|= .+. .....+.+-..+|..|..+.+|..|+..+...-+
T Consensus 456 Ydr-i~~--~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLl 495 (644)
T KOG2395|consen 456 YDR-IGR--RAKTALPGLGDAIKHVDVTADGKWILATCKTYLL 495 (644)
T ss_pred ehh-hhh--hhhhcccccCCceeeEEeeccCcEEEEecccEEE
Confidence 984 222 1223456677889999999999988776644433
No 391
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=91.72 E-value=7.7 Score=33.16 Aligned_cols=157 Identities=12% Similarity=0.214 Sum_probs=68.0
Q ss_pred cCCCCEEEEee--CC----CcEEEEecCCCceeeeeeecCC---CCCeeEEEEcCCCCEEEEecC---------------
Q 023500 12 SPSGKLLATAS--FD----ATTCIWEDVGGDYECVATLEGH---ENEVKSVSWNASGTLLATCGR--------------- 67 (281)
Q Consensus 12 ~~~~~~l~tg~--~d----~~i~lw~~~~~~~~~~~~~~~h---~~~v~~v~~~~~~~~l~s~~~--------------- 67 (281)
-|+|++++++- .+ |.+.+.|-.+. +.....+.. ..--+.+-|.|..+.++|+..
T Consensus 138 lp~G~imIS~lGd~~G~g~Ggf~llD~~tf--~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~ 215 (461)
T PF05694_consen 138 LPDGRIMISALGDADGNGPGGFVLLDGETF--EVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDL 215 (461)
T ss_dssp -SS--EEEEEEEETTS-S--EEEEE-TTT----EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTH
T ss_pred cCCccEEEEeccCCCCCCCCcEEEEcCccc--cccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHh
Confidence 46888887763 22 34667665443 333443322 223456777888888888643
Q ss_pred -----CCcEEEEEecCCCeeEEeEeecCCccceeEEEe--cCCCCe-EEEEecCCeEEEEeCCCCCCCCceee--eeeee
Q 023500 68 -----DKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQW--HPTMDV-LFSCSYDNTIKVWWAEDTDSDNWHCV--QTISE 137 (281)
Q Consensus 68 -----d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~--~p~~~~-l~s~s~d~~v~~w~~~~~~~~~~~~~--~~~~~ 137 (281)
-.++.+||+...+..+.+. +.......--|+| .|+..+ ++.+.-.++|..|.-.. ...|... .++..
T Consensus 216 ~~~~yG~~l~vWD~~~r~~~Q~id-Lg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~--~g~W~a~kVi~ip~ 292 (461)
T PF05694_consen 216 EAGKYGHSLHVWDWSTRKLLQTID-LGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDD--DGEWAAEKVIDIPA 292 (461)
T ss_dssp HHH-S--EEEEEETTTTEEEEEEE-S-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-E--TTEEEEEEEEEE--
T ss_pred hcccccCeEEEEECCCCcEeeEEe-cCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcC--CCCeeeeEEEECCC
Confidence 3689999997654333222 2111112233444 455554 55555566666554322 2223222 22211
Q ss_pred c-------------cCCccccEEEEEEccCCCEEEEee-CCCcEEEEeCC
Q 023500 138 S-------------NNGHSSTIWALSFNAKGDKLVSCS-DDLTIKIWGAD 173 (281)
Q Consensus 138 ~-------------~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~~w~~~ 173 (281)
. ..+-+..++.+..|.|.++|.... ..|.++-||+.
T Consensus 293 ~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDIS 342 (461)
T PF05694_consen 293 KKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDIS 342 (461)
T ss_dssp EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-S
T ss_pred cccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecC
Confidence 1 011145678999999988776654 68999999975
No 392
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=91.69 E-value=3.3 Score=36.48 Aligned_cols=125 Identities=12% Similarity=0.168 Sum_probs=64.7
Q ss_pred cccEEEEEEccCC----CEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCC
Q 023500 143 SSTIWALSFNAKG----DKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADD 218 (281)
Q Consensus 143 ~~~v~~~~~~~~~----~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~ 218 (281)
-..|..+.|.|-+ ..|+..-....|.+|-+.......... ...+.|.+.....--..-+-|+|+.-+++.-...
T Consensus 56 FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~--l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~ 133 (671)
T PF15390_consen 56 FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKL--LMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR 133 (671)
T ss_pred cceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccc--eeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence 3558899998842 256666778899999664222111110 0111121110001111235677776544443333
Q ss_pred cEE-EEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 219 SVQ-FFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 219 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
.+. ++.+..++ . +..... ...+.|.|..|..+|+++++..+.-=--+|||-
T Consensus 134 dvSV~~sV~~d~----s---rVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 134 DVSVLPSVHCDS----S---RVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred ceeEeeeeeeCC----c---eEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 332 33222211 1 111112 234679999999999988777665555778874
No 393
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=91.51 E-value=7.9 Score=32.83 Aligned_cols=156 Identities=13% Similarity=0.153 Sum_probs=88.8
Q ss_pred eEEEEcCCCCEEEEeeC---CCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEE-ecCCCcEEEEEecCCCee
Q 023500 7 RSCAWSPSGKLLATASF---DATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLAT-CGRDKSVWIWEVMPGNEF 82 (281)
Q Consensus 7 ~~~~~~~~~~~l~tg~~---d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s-~~~d~~v~~w~~~~~~~~ 82 (281)
..++++|+++.+..+.. ++.+.+.|..+...... ...+- .+ ..++++|+|.++.. -..++.|.+.|.......
T Consensus 119 ~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~-~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~ 195 (381)
T COG3391 119 VGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT-IPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV 195 (381)
T ss_pred ceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE-EecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCccee
Confidence 46789999975544443 67888888776654322 22322 33 78999999996554 457889999996533221
Q ss_pred E-EeEeecCCccceeEEEecCCCCeEEEEecC---CeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEE
Q 023500 83 E-CVSVLQGHAQDVKMVQWHPTMDVLFSCSYD---NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158 (281)
Q Consensus 83 ~-~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d---~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 158 (281)
. .......-...-..+.+.|+++.+...-.. +.+...+..... +..... ..+.. ....+.++|++..+
T Consensus 196 ~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~------v~~~~~-~~~~~-~~~~v~~~p~g~~~ 267 (381)
T COG3391 196 RGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGN------VTATDL-PVGSG-APRGVAVDPAGKAA 267 (381)
T ss_pred ccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCce------EEEecc-ccccC-CCCceeECCCCCEE
Confidence 0 000001112233567889999865443333 477666554431 111100 01111 34567888999877
Q ss_pred EEee-CCCcEEEEeCC
Q 023500 159 VSCS-DDLTIKIWGAD 173 (281)
Q Consensus 159 ~s~~-~d~~i~~w~~~ 173 (281)
.... ..+.+.+.|..
T Consensus 268 yv~~~~~~~V~vid~~ 283 (381)
T COG3391 268 YVANSQGGTVSVIDGA 283 (381)
T ss_pred EEEecCCCeEEEEeCC
Confidence 7763 34677777654
No 394
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.29 E-value=4.5 Score=37.28 Aligned_cols=79 Identities=18% Similarity=0.320 Sum_probs=53.2
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecC---------CC--ceeeeee------e-cCCCCCeeEEEEcCC---CCEE
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDV---------GG--DYECVAT------L-EGHENEVKSVSWNAS---GTLL 62 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~---------~~--~~~~~~~------~-~~h~~~v~~v~~~~~---~~~l 62 (281)
-.|..+.++|+|+++|..|..+...+.=+. .+ ...|-.. + ..+...|..+.|+|. +..|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 358889999999999988887755443211 01 1112111 1 234567889999996 4778
Q ss_pred EEecCCCcEEEEEecCCCee
Q 023500 63 ATCGRDKSVWIWEVMPGNEF 82 (281)
Q Consensus 63 ~s~~~d~~v~~w~~~~~~~~ 82 (281)
+.-..|+++|+||+......
T Consensus 165 ~vLtsdn~lR~y~~~~~~~p 184 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQHP 184 (717)
T ss_pred EEEecCCEEEEEecCCCCCC
Confidence 88888999999999755433
No 395
>PHA03098 kelch-like protein; Provisional
Probab=90.74 E-value=12 Score=33.41 Aligned_cols=62 Identities=8% Similarity=0.090 Sum_probs=34.4
Q ss_pred CCCEEEEeeCCC------cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCC-----cEEEEEec
Q 023500 14 SGKLLATASFDA------TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDK-----SVWIWEVM 77 (281)
Q Consensus 14 ~~~~l~tg~~d~------~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~-----~v~~w~~~ 77 (281)
++.+++.||.++ .+..||..++++..+..+.........+. -++..++.||.++ ++..||..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~ 366 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPG 366 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCC
Confidence 456777887653 46678877776644433322222222222 2567777787653 45566654
No 396
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=90.71 E-value=1.2 Score=23.45 Aligned_cols=28 Identities=25% Similarity=0.522 Sum_probs=21.0
Q ss_pred CCeeEEEEcCCCCeeEEEeCCC--CeEEEE
Q 023500 248 MDVNSVQWSPGERRLLASASDD--GMIKIW 275 (281)
Q Consensus 248 ~~v~~~~~~~~~~~~~~s~~~D--g~v~iw 275 (281)
..-....|+|+|+.++.++..+ |.-.||
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3456788999999888888877 777766
No 397
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=90.64 E-value=0.51 Score=43.35 Aligned_cols=113 Identities=15% Similarity=0.220 Sum_probs=65.7
Q ss_pred EcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEE-----------EEcCCCCEEEEecCCCcEEEEEecCC
Q 023500 11 WSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSV-----------SWNASGTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 11 ~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v-----------~~~~~~~~l~s~~~d~~v~~w~~~~~ 79 (281)
|-+..-++..+-.++.++|-..+.-.. ..+.+|...+..+ ..+|||..++.++.||.++.|.+.-.
T Consensus 191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~---~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~ 267 (1283)
T KOG1916|consen 191 IAVNKVYICYGLKGGEIRLLNINRALR---SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYIT 267 (1283)
T ss_pred cccccceeeeccCCCceeEeeechHHH---HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeee
Confidence 333455677777778888765433221 2233455444333 36899999999999999999987543
Q ss_pred C--eeEEeEeecCCc--cceeEEEecCC---------CCeEEEEecC-CeEEEEeCCCCCCCCceee
Q 023500 80 N--EFECVSVLQGHA--QDVKMVQWHPT---------MDVLFSCSYD-NTIKVWWAEDTDSDNWHCV 132 (281)
Q Consensus 80 ~--~~~~~~~~~~~~--~~v~~v~~~p~---------~~~l~s~s~d-~~v~~w~~~~~~~~~~~~~ 132 (281)
. ...|...++.|. ..++.+ ++-+ ..++++++.- ..+++| ....|+|.
T Consensus 268 g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w-----~~a~w~Cl 328 (1283)
T KOG1916|consen 268 GKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFW-----AEAPWQCL 328 (1283)
T ss_pred ccccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEe-----eccchhhh
Confidence 3 223444555565 233333 3332 1244555544 467888 44557666
No 398
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.64 E-value=3.9 Score=39.46 Aligned_cols=148 Identities=12% Similarity=0.184 Sum_probs=82.2
Q ss_pred eCCCcEEEEecCCCceeeeeeecCCCCCeeEEEE-cCC-------CCEEEEecCCCcEEEEEecCCCeeEEe------Ee
Q 023500 22 SFDATTCIWEDVGGDYECVATLEGHENEVKSVSW-NAS-------GTLLATCGRDKSVWIWEVMPGNEFECV------SV 87 (281)
Q Consensus 22 ~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~-~~~-------~~~l~s~~~d~~v~~w~~~~~~~~~~~------~~ 87 (281)
+.|+.+.+|+.+++. ....+.+-...|..|.. .|. =++++.-+.--.|.+.-+.-....... ..
T Consensus 96 TiDn~L~lWny~~~~--e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~ 173 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDN--ELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFK 173 (1311)
T ss_pred EeCCeEEEEEcCCCC--ccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccccccee
Confidence 458999999987632 13344554555555543 332 234444444455666665422211011 11
Q ss_pred ecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCce---e-------------eeeeeeccCCccccEEEEEE
Q 023500 88 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWH---C-------------VQTISESNNGHSSTIWALSF 151 (281)
Q Consensus 88 ~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~---~-------------~~~~~~~~~~h~~~v~~~~~ 151 (281)
+......|+|+....+|+.+++|-.| .+|.+.-...+.|. | +.++......+..+|..+..
T Consensus 174 i~~dg~~V~~I~~t~nGRIF~~G~dg---~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~I 250 (1311)
T KOG1900|consen 174 ISVDGVSVNCITYTENGRIFFAGRDG---NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITI 250 (1311)
T ss_pred eecCCceEEEEEeccCCcEEEeecCC---CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEe
Confidence 22224567888877777777776554 34433211111221 0 11111111245678889999
Q ss_pred ccCCCEEEEeeCCCcEEEEeCCc
Q 023500 152 NAKGDKLVSCSDDLTIKIWGADI 174 (281)
Q Consensus 152 ~~~~~~l~s~~~d~~i~~w~~~~ 174 (281)
......+.+=+..|+++.|++..
T Consensus 251 D~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 251 DNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccccceeeeeccCceEEEEEccC
Confidence 88888999999999999998753
No 399
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.19 E-value=7.9 Score=30.60 Aligned_cols=102 Identities=12% Similarity=0.084 Sum_probs=65.5
Q ss_pred CCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccc
Q 023500 15 GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQD 94 (281)
Q Consensus 15 ~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~ 94 (281)
..+++.|+..+.+.--|...++...-+.+. ..+.+-+.- -|++++.|...+.+.+-+...+........+. ..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg---~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~---~v 95 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG---VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE---TV 95 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhC---ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehh---hh
Confidence 357778888887777777766543322222 333333322 57889999999999988887774332211111 11
Q ss_pred eeEEEecCCCCeEEEEecCCeEEEEeCCC
Q 023500 95 VKMVQWHPTMDVLFSCSYDNTIKVWWAED 123 (281)
Q Consensus 95 v~~v~~~p~~~~l~s~s~d~~v~~w~~~~ 123 (281)
-......+++.++..++.|+..+..|..+
T Consensus 96 k~~a~~d~~~glIycgshd~~~yalD~~~ 124 (354)
T KOG4649|consen 96 KVRAQCDFDGGLIYCGSHDGNFYALDPKT 124 (354)
T ss_pred ccceEEcCCCceEEEecCCCcEEEecccc
Confidence 12334568899999999999998887654
No 400
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.17 E-value=7.9 Score=30.59 Aligned_cols=96 Identities=11% Similarity=0.107 Sum_probs=58.2
Q ss_pred CCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeE-EEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCcc
Q 023500 15 GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKS-VSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQ 93 (281)
Q Consensus 15 ~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~-v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~ 93 (281)
|++++.|++.|.+.+-+.++++.-..... .+.|.+ ....+++..|..|+.|++...-|.... .++...+....
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~---~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~---~cVykskcgG~ 136 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVI---LETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTY---GCVYKSKCGGG 136 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeee---hhhhccceEEcCCCceEEEecCCCcEEEeccccc---ceEEecccCCc
Confidence 56788999999998888887753222221 133332 234678999999999999998887533 34444443333
Q ss_pred ceeEEEecCCCCeEEEEecCCeE
Q 023500 94 DVKMVQWHPTMDVLFSCSYDNTI 116 (281)
Q Consensus 94 ~v~~v~~~p~~~~l~s~s~d~~v 116 (281)
.-.+-...|-...|+.+...|.+
T Consensus 137 ~f~sP~i~~g~~sly~a~t~G~v 159 (354)
T KOG4649|consen 137 TFVSPVIAPGDGSLYAAITAGAV 159 (354)
T ss_pred eeccceecCCCceEEEEeccceE
Confidence 33344455533444444555544
No 401
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=89.81 E-value=0.21 Score=45.70 Aligned_cols=120 Identities=13% Similarity=0.142 Sum_probs=68.0
Q ss_pred ecCCCCCeeEEEEcC-CCCEEEEecCCCcEEEEEecC--CCee--EEeEeecCCccceeEEEecC---CCCeEEEEecCC
Q 023500 43 LEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMP--GNEF--ECVSVLQGHAQDVKMVQWHP---TMDVLFSCSYDN 114 (281)
Q Consensus 43 ~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~~w~~~~--~~~~--~~~~~~~~~~~~v~~v~~~p---~~~~l~s~s~d~ 114 (281)
++|..+.|-.+.|-. +..++. -.-|.+.||++.. ++.. -.+.........+.-|.|.| ..-++..+-.++
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~ 205 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG 205 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence 356677787888733 222222 2335788998743 2210 11223333344456677776 344555556667
Q ss_pred eEEEEeCCCCCCCCceeeeeeeeccCCccccEEE-----------EEEccCCCEEEEeeCCCcEEEEeCCc
Q 023500 115 TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWA-----------LSFNAKGDKLVSCSDDLTIKIWGADI 174 (281)
Q Consensus 115 ~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-----------~~~~~~~~~l~s~~~d~~i~~w~~~~ 174 (281)
.+++...++... ....+|...+.. -..+|||+.|+....||.+++|.+.+
T Consensus 206 ~i~lL~~~ra~~----------~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi 266 (1283)
T KOG1916|consen 206 EIRLLNINRALR----------SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYI 266 (1283)
T ss_pred ceeEeeechHHH----------HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeee
Confidence 888775544311 111123222222 23689999999999999999997643
No 402
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.35 E-value=3.4 Score=35.25 Aligned_cols=102 Identities=16% Similarity=0.294 Sum_probs=67.8
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceee--eeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC
Q 023500 3 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYEC--VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~--~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
.++|.++.|++|.+.+|.--.|..|.+......+... ..+.+..+..|....|+.+ .-+|--...| +-++-+.+..
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pek 143 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEK 143 (657)
T ss_pred CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhh
Confidence 4689999999999999999999999999864332211 1222333456888888765 3344333333 4666654332
Q ss_pred eeEEeEeecCCccceeEEEecCCCCeEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTMDVLF 108 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~ 108 (281)
..++..+.|...|+.-.|.|+.+.++
T Consensus 144 --rslRlVks~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 144 --RSLRLVKSHNLNVNWYMYCPETAVIL 169 (657)
T ss_pred --hhhhhhhhcccCccEEEEccccceEe
Confidence 23455667888899999999887543
No 403
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=89.13 E-value=14 Score=32.05 Aligned_cols=55 Identities=13% Similarity=0.210 Sum_probs=36.0
Q ss_pred CeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeE----eec-CCccceeEEEecCCC
Q 023500 49 EVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVS----VLQ-GHAQDVKMVQWHPTM 104 (281)
Q Consensus 49 ~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~----~~~-~~~~~v~~v~~~p~~ 104 (281)
.-+.++|.|+|++|++--..|.|++++-..... ..+. ... ........++++|+.
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~-~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEV-KVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCce-eeeecCCceeccCCCCceeeEEECCCc
Confidence 347899999998888876678898887433221 1111 111 124567899999986
No 404
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=89.09 E-value=4 Score=34.85 Aligned_cols=77 Identities=8% Similarity=0.095 Sum_probs=42.5
Q ss_pred EEEecCCCCeEEEEecCCeEEE---EeCCCCC-CCCceeeeeeeeccCCccccEEEEEEcc-----------CCCEEEEe
Q 023500 97 MVQWHPTMDVLFSCSYDNTIKV---WWAEDTD-SDNWHCVQTISESNNGHSSTIWALSFNA-----------KGDKLVSC 161 (281)
Q Consensus 97 ~v~~~p~~~~l~s~s~d~~v~~---w~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----------~~~~l~s~ 161 (281)
.++.+|++++++.+..+..+.+ |+..+.. ......+.............|+++.+-| |...++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4567888888888777766554 4332221 1111111111110001114566665533 45789999
Q ss_pred eCCCcEEEEeCC
Q 023500 162 SDDLTIKIWGAD 173 (281)
Q Consensus 162 ~~d~~i~~w~~~ 173 (281)
..+|.+++|...
T Consensus 86 ~ssG~vrfyte~ 97 (415)
T PF14655_consen 86 TSSGYVRFYTEN 97 (415)
T ss_pred ecccEEEEEecc
Confidence 999999999754
No 405
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=88.74 E-value=11 Score=30.06 Aligned_cols=114 Identities=13% Similarity=0.140 Sum_probs=60.1
Q ss_pred CCCC--eeEEEEcCCCCEEEEecCCC--cEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeC
Q 023500 46 HENE--VKSVSWNASGTLLATCGRDK--SVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121 (281)
Q Consensus 46 h~~~--v~~v~~~~~~~~l~s~~~d~--~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~ 121 (281)
|+.. ...+.|..+|.++-+.|.-| .|+.+|+..++.... ..+.. ..--..+.... +.++.-.-.++...+||.
T Consensus 41 Hd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~-~~l~~-~~FgEGit~~~-d~l~qLTWk~~~~f~yd~ 117 (264)
T PF05096_consen 41 HDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQS-VPLPP-RYFGEGITILG-DKLYQLTWKEGTGFVYDP 117 (264)
T ss_dssp --TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEE-EE-TT-T--EEEEEEET-TEEEEEESSSSEEEEEET
T ss_pred CCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEE-EECCc-cccceeEEEEC-CEEEEEEecCCeEEEEcc
Confidence 5543 34677777888888888877 677777766653222 12221 11112233332 233444467788899976
Q ss_pred CCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCc
Q 023500 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI 174 (281)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~ 174 (281)
+.- +.+.++.-. ..=+.++ .+++.|+....+..+.++|.+.
T Consensus 118 ~tl-----~~~~~~~y~-----~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~ 158 (264)
T PF05096_consen 118 NTL-----KKIGTFPYP-----GEGWGLT--SDGKRLIMSDGSSRLYFLDPET 158 (264)
T ss_dssp TTT-----EEEEEEE-S-----SS--EEE--ECSSCEEEE-SSSEEEEE-TTT
T ss_pred ccc-----eEEEEEecC-----CcceEEE--cCCCEEEEECCccceEEECCcc
Confidence 542 334444322 2235566 4566676666677888888653
No 406
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=88.17 E-value=16 Score=31.38 Aligned_cols=103 Identities=11% Similarity=0.142 Sum_probs=48.4
Q ss_pred CCCcEEEEecCCCceeeeeeecCCCCCeeEEEEc--CCCCE-EEEecCCCcEEEEEecCCCeeEEeEeec--C-------
Q 023500 23 FDATTCIWEDVGGDYECVATLEGHENEVKSVSWN--ASGTL-LATCGRDKSVWIWEVMPGNEFECVSVLQ--G------- 90 (281)
Q Consensus 23 ~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~--~~~~~-l~s~~~d~~v~~w~~~~~~~~~~~~~~~--~------- 90 (281)
..+.+.+||..+.+......+........-|.|. |+..+ ++.+.-..+|..|--.....+....++. .
T Consensus 220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~ 299 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI 299 (461)
T ss_dssp S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence 3467999999887643333332212234567774 44555 3333334445444332333333322221 0
Q ss_pred ----------CccceeEEEecCCCCeE-EEEecCCeEEEEeCCCCC
Q 023500 91 ----------HAQDVKMVQWHPTMDVL-FSCSYDNTIKVWWAEDTD 125 (281)
Q Consensus 91 ----------~~~~v~~v~~~p~~~~l-~s~s~d~~v~~w~~~~~~ 125 (281)
-..-|+.+..+.+.++| +++-.+|.|+.||+.+..
T Consensus 300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 300 LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp --GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 02346888999999865 566778999999998754
No 407
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=87.96 E-value=22 Score=32.91 Aligned_cols=71 Identities=17% Similarity=0.259 Sum_probs=39.3
Q ss_pred cEEEEEEccCCCEEEEeeCCC-----cEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCc
Q 023500 145 TIWALSFNAKGDKLVSCSDDL-----TIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDS 219 (281)
Q Consensus 145 ~v~~~~~~~~~~~l~s~~~d~-----~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~ 219 (281)
+-..+.|.|+|..+++-..|| .+.++..+... + +-...+ -..+...+..+|.-...+++.+..+.
T Consensus 248 ~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLr-H---Gef~lr------~~~dEk~~~~~wn~~s~vlav~~~n~ 317 (1243)
T COG5290 248 MEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLR-H---GEFDLR------VGCDEKAFLENWNLLSTVLAVAEGNL 317 (1243)
T ss_pred chhccccccCCceeeeeccCCCCCcceEEEEccCCcc-c---CCcccc------CCchhhhhhhhhhHHHHHHHHhhcce
Confidence 334589999999999977555 45555322110 0 000000 01233445556665556666777788
Q ss_pred EEEEec
Q 023500 220 VQFFVE 225 (281)
Q Consensus 220 ~~~~~~ 225 (281)
+++|-.
T Consensus 318 ~~lwtt 323 (1243)
T COG5290 318 LKLWTT 323 (1243)
T ss_pred EEEEEc
Confidence 888843
No 408
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=87.77 E-value=4.3 Score=30.04 Aligned_cols=30 Identities=33% Similarity=0.607 Sum_probs=25.3
Q ss_pred CeeEEEEcCCC-----CeeEEEeCCCCeEEEEEcc
Q 023500 249 DVNSVQWSPGE-----RRLLASASDDGMIKIWELA 278 (281)
Q Consensus 249 ~v~~~~~~~~~-----~~~~~s~~~Dg~v~iw~~~ 278 (281)
.+..++|||.| +.+|+....++.|.||.-.
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 68899999954 5689999999999999854
No 409
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.65 E-value=13 Score=29.93 Aligned_cols=128 Identities=12% Similarity=0.163 Sum_probs=77.5
Q ss_pred ecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCC
Q 023500 43 LEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAE 122 (281)
Q Consensus 43 ~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~ 122 (281)
+.|-...+.++.|+|+.+.|++........||=-..++-.. ...+.+ -..-..+.+...+++.++-=.+..+.+..++
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlir-tiPL~g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIR-TIPLTG-FSDPETIEYIGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEE-Eecccc-cCChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence 44556679999999999988887777776777554444221 122233 2335667777777777777777788777665
Q ss_pred CCCCC--CceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 023500 123 DTDSD--NWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 123 ~~~~~--~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~ 173 (281)
..... .......+.....+ +...-.++|+|....|...-.-.-+++|.++
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~-N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKK-NKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred CCccEEeccceEEeccccCCC-CcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 33111 01101112111111 3445679999988877777766667887654
No 410
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.62 E-value=11 Score=32.30 Aligned_cols=96 Identities=10% Similarity=0.067 Sum_probs=55.5
Q ss_pred CcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEE
Q 023500 69 KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWA 148 (281)
Q Consensus 69 ~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 148 (281)
+.+.-|-+...+...++.......++|.+++|+||.+.++.-=.|++|.++.....+. .+.....+......+..
T Consensus 43 ggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~-----~l~~~~~ck~k~~~IlG 117 (657)
T KOG2377|consen 43 GGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNS-----QLEYTQECKTKNANILG 117 (657)
T ss_pred CCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCch-----hhHHHHHhccCcceeEE
Confidence 3345566554332222333333455899999999999999999999998886521110 11111122233455777
Q ss_pred EEEccCCCEEEEeeCCCcEEEEe
Q 023500 149 LSFNAKGDKLVSCSDDLTIKIWG 171 (281)
Q Consensus 149 ~~~~~~~~~l~s~~~d~~i~~w~ 171 (281)
..|+.+ .-++.....| +.+|-
T Consensus 118 F~W~~s-~e~A~i~~~G-~e~y~ 138 (657)
T KOG2377|consen 118 FCWTSS-TEIAFITDQG-IEFYQ 138 (657)
T ss_pred EEEecC-eeEEEEecCC-eEEEE
Confidence 788766 3455555555 55664
No 411
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.55 E-value=17 Score=35.44 Aligned_cols=34 Identities=12% Similarity=0.336 Sum_probs=27.9
Q ss_pred CCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 245 AHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 245 ~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
.+..+|..++... .+.++.+-++.|+|++|++..
T Consensus 240 ~~~dpI~qi~ID~-SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 240 SSKDPIRQITIDN-SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCcceeeEecc-ccceeeeeccCceEEEEEccC
Confidence 5677899998876 467888899999999999864
No 412
>PHA03098 kelch-like protein; Provisional
Probab=87.31 E-value=21 Score=31.82 Aligned_cols=63 Identities=13% Similarity=0.141 Sum_probs=35.4
Q ss_pred CCCEEEEeeCCC-----cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC------CcEEEEEecC
Q 023500 14 SGKLLATASFDA-----TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD------KSVWIWEVMP 78 (281)
Q Consensus 14 ~~~~l~tg~~d~-----~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d------~~v~~w~~~~ 78 (281)
++++++.||.++ .+..||+.++++.....+...... .+++ .-++...+.||.+ +.+..||...
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t 415 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNT 415 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCC
Confidence 577888888663 466788877766544433211111 1222 2356667777732 3566777653
No 413
>PHA02790 Kelch-like protein; Provisional
Probab=87.13 E-value=20 Score=31.49 Aligned_cols=104 Identities=9% Similarity=0.031 Sum_probs=52.7
Q ss_pred CCCEEEEeeCCC-----cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCC--cEEEEEecCCCeeEEeE
Q 023500 14 SGKLLATASFDA-----TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDK--SVWIWEVMPGNEFECVS 86 (281)
Q Consensus 14 ~~~~l~tg~~d~-----~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~--~v~~w~~~~~~~~~~~~ 86 (281)
++.+++.||.++ .+..||+.++.+..+..+.........+ .-++...+.||.++ ++..||... +.+..+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~-n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGD-AAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCC-CeEEECC
Confidence 456778888653 4667888777665555443222222222 23667777787643 566677532 2233222
Q ss_pred eecCCccceeEEEecCCCCeEEEEecCC---eEEEEeCC
Q 023500 87 VLQGHAQDVKMVQWHPTMDVLFSCSYDN---TIKVWWAE 122 (281)
Q Consensus 87 ~~~~~~~~v~~v~~~p~~~~l~s~s~d~---~v~~w~~~ 122 (281)
.+.........+ .-++.+++.|+.++ ++..||.+
T Consensus 348 ~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~ 384 (480)
T PHA02790 348 SLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPN 384 (480)
T ss_pred CCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCC
Confidence 222111111111 22456677777554 45566554
No 414
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.07 E-value=18 Score=34.82 Aligned_cols=116 Identities=10% Similarity=0.046 Sum_probs=67.7
Q ss_pred CeeEEEEcCCCCEE--EEecCCCcEEEEEecCCCeeE--EeE------eecCCccceeEEEecCCCC-eEEEEecCCeEE
Q 023500 49 EVKSVSWNASGTLL--ATCGRDKSVWIWEVMPGNEFE--CVS------VLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIK 117 (281)
Q Consensus 49 ~v~~v~~~~~~~~l--~s~~~d~~v~~w~~~~~~~~~--~~~------~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~ 117 (281)
++..+..++|+... +..+.+-.|..+|+....+.. ... +......-.-++.|+|.-. ..+.+..|..|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 44445556776543 334445578889986432110 011 1111122335778988744 456677888888
Q ss_pred EEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 023500 118 VWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 118 ~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~ 173 (281)
+.-+.... ..+..+ .-...+++++|+|.|..++.|...|++.=|...
T Consensus 182 V~~~~~~~----~~v~s~-----p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~ 228 (1405)
T KOG3630|consen 182 VKSTKQLA----QNVTSF-----PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS 228 (1405)
T ss_pred hhhhhhhh----hhhccc-----CcccceeeEEeccccceeeEecCCCeEEEeecc
Confidence 76443211 011111 124567899999999999999999998877543
No 415
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=86.06 E-value=21 Score=30.56 Aligned_cols=114 Identities=20% Similarity=0.196 Sum_probs=61.8
Q ss_pred eeEEEEcCCCCEEEEe-eCCC----cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC-----------C
Q 023500 6 VRSCAWSPSGKLLATA-SFDA----TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD-----------K 69 (281)
Q Consensus 6 i~~~~~~~~~~~l~tg-~~d~----~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d-----------~ 69 (281)
+....++|+|+++|-+ +..| .+++.|..+++... ..+..- ....+.|.++++.|+-...+ .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~-d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP-DGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE-EEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC-Cccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 3467899999988744 4444 48899988875422 122211 11239999998765544322 2
Q ss_pred cEEEEEecCCCeeEEeEeecCCccc--eeEEEecCCCCeEEEEe-cCCe---EEEEeCCC
Q 023500 70 SVWIWEVMPGNEFECVSVLQGHAQD--VKMVQWHPTMDVLFSCS-YDNT---IKVWWAED 123 (281)
Q Consensus 70 ~v~~w~~~~~~~~~~~~~~~~~~~~--v~~v~~~p~~~~l~s~s-~d~~---v~~w~~~~ 123 (281)
.|+.|.+-..... ...++...... ...+..++++++++..+ ...+ +.+.+...
T Consensus 203 ~v~~~~~gt~~~~-d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 203 QVYRHKLGTPQSE-DELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp EEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred EEEEEECCCChHh-CeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 3566665433321 12334333322 56788899999765433 3333 44444443
No 416
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=85.74 E-value=4.3 Score=36.26 Aligned_cols=68 Identities=18% Similarity=0.210 Sum_probs=38.7
Q ss_pred CCCCEEEEeeCCCcEEEEecCC-----CceeeeeeecC--------------------CCCCeeEEEEcC----CCCEEE
Q 023500 13 PSGKLLATASFDATTCIWEDVG-----GDYECVATLEG--------------------HENEVKSVSWNA----SGTLLA 63 (281)
Q Consensus 13 ~~~~~l~tg~~d~~i~lw~~~~-----~~~~~~~~~~~--------------------h~~~v~~v~~~~----~~~~l~ 63 (281)
++...++.+..||.+...+... ..+.. ..+.. -...+..++.++ +..+++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 234 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSE-ELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLF 234 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE-----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEE-EEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEE
Confidence 3566777788888877665432 11111 01111 123455666666 678999
Q ss_pred EecCCCcEEEEEecCCCe
Q 023500 64 TCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 64 s~~~d~~v~~w~~~~~~~ 81 (281)
+.+.|+++|+||+.....
T Consensus 235 tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 235 TLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp EEETTSEEEEEETTTTCE
T ss_pred EEeCCCeEEEEECCCCeE
Confidence 999999999999976653
No 417
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.69 E-value=11 Score=32.91 Aligned_cols=92 Identities=17% Similarity=0.239 Sum_probs=52.2
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEE
Q 023500 5 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFEC 84 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~ 84 (281)
.|..+..++.|..+|-.|-+|.+..+=+. .+..-..++..+..|+|=.|. -+..|++.+.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~--rwG~~s~~eDgk~~v~CRt~~-i~~~~ftss~----------------- 164 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPK--RWGKNSEFEDGKSTVNCRTTP-VAERFFTSST----------------- 164 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchh--hcCccceecCCCceEEEEeec-ccceeeccCC-----------------
Confidence 46778889999999888888876654211 111122333223334443332 2222222211
Q ss_pred eEeecCCccceeEEEecCCC---CeEEEEecCCeEEEEeCCC
Q 023500 85 VSVLQGHAQDVKMVQWHPTM---DVLFSCSYDNTIKVWWAED 123 (281)
Q Consensus 85 ~~~~~~~~~~v~~v~~~p~~---~~l~s~s~d~~v~~w~~~~ 123 (281)
.-.+..++|||+. .++..-+.|+++++|+...
T Consensus 165 -------~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 165 -------SLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSE 199 (741)
T ss_pred -------ceeeeeccccCCccCCceEEEEecCcEEEEEecCC
Confidence 1125567788875 3566667888999987754
No 418
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=85.60 E-value=22 Score=30.41 Aligned_cols=103 Identities=15% Similarity=0.195 Sum_probs=56.0
Q ss_pred eEEEEcCCCCEEEEe-cCC----CcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCC-----------
Q 023500 51 KSVSWNASGTLLATC-GRD----KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN----------- 114 (281)
Q Consensus 51 ~~v~~~~~~~~l~s~-~~d----~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~----------- 114 (281)
....++|+|++++-+ +.. .++++.|+..+.... ..+. ......+.|.++++.++-...+.
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~--d~i~--~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP--DGIE--NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE--EEEE--EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC--Cccc--ccccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 356889999987632 332 469999998764322 1111 11123489999988766555333
Q ss_pred eEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee
Q 023500 115 TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS 162 (281)
Q Consensus 115 ~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 162 (281)
.|+.|.+.+..... .. +.... ........+..++++++|+...
T Consensus 203 ~v~~~~~gt~~~~d-~l---vfe~~-~~~~~~~~~~~s~d~~~l~i~~ 245 (414)
T PF02897_consen 203 QVYRHKLGTPQSED-EL---VFEEP-DEPFWFVSVSRSKDGRYLFISS 245 (414)
T ss_dssp EEEEEETTS-GGG--EE---EEC-T-TCTTSEEEEEE-TTSSEEEEEE
T ss_pred EEEEEECCCChHhC-ee---EEeec-CCCcEEEEEEecCcccEEEEEE
Confidence 36777665543211 11 11111 1112245678889998766543
No 419
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.15 E-value=8.2 Score=29.86 Aligned_cols=75 Identities=15% Similarity=0.165 Sum_probs=46.4
Q ss_pred ecCCCCeEEEEecCCeEEEEeCCCCCCCCce-eeeeeeec----cCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCc
Q 023500 100 WHPTMDVLFSCSYDNTIKVWWAEDTDSDNWH-CVQTISES----NNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI 174 (281)
Q Consensus 100 ~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~-~~~~~~~~----~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~ 174 (281)
+...++++++.+.+|.+++||+......-.. .+..+... .......|..+.++.+|.-+++-+ +|....|+.++
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4456778999999999999998764211000 00011100 002446678888888887666654 57788888765
Q ss_pred c
Q 023500 175 T 175 (281)
Q Consensus 175 ~ 175 (281)
.
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 4
No 420
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=84.71 E-value=20 Score=33.69 Aligned_cols=156 Identities=11% Similarity=0.165 Sum_probs=70.9
Q ss_pred CCCcEEEEEecCCCeeEEeEeecCCccceeEEE-ecCCCC-------eEEEEecCCeEEEEeCCCCC-CCCceee-eeee
Q 023500 67 RDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ-WHPTMD-------VLFSCSYDNTIKVWWAEDTD-SDNWHCV-QTIS 136 (281)
Q Consensus 67 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~-~~p~~~-------~l~s~s~d~~v~~w~~~~~~-~~~~~~~-~~~~ 136 (281)
.|+.+.+|+..++++++++..+. | .|..|+ +-|..+ .++..++...+.++-+...+ ....... ..+.
T Consensus 100 ~dnkLiLWnynn~neyq~idd~s-h--tIlkVkLvrPkantFvs~i~hlL~vAT~~e~~ilgvs~d~~T~Els~fnTgl~ 176 (1263)
T COG5308 100 NDNKLILWNYNNSNEYQEIDDFS-H--TILKVKLVRPKANTFVSRISHLLFVATEKEVMILGVSKDTKTGELSLFNTGLV 176 (1263)
T ss_pred cCCEEEEEecCCCcchhhhhhhh-h--heeEEEEeccCCcccHHhhhhhhhhhhhheeeEEEEEeccccceeEEEecceE
Confidence 36889999999888776654332 2 233332 233322 12222233334444332111 0000000 0011
Q ss_pred eccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCcccc------------ccCCCCcccceeEEeecccCcceEEEE
Q 023500 137 ESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRM------------QSGDGYASWRHLCTISGYHDRTIFSVH 204 (281)
Q Consensus 137 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~v~~~~ 204 (281)
. ....-.|.|+.-+-+|+.+.+|-.| ..+|...-... .+...+..+-+.....+.+..+|..+.
T Consensus 177 v--svqGinV~civs~e~GrIFf~g~~d--~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipgetI~Ql~ 252 (1263)
T COG5308 177 V--SVQGINVRCIVSEEDGRIFFGGEND--PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGETIKQLA 252 (1263)
T ss_pred E--eccCceeEEEEeccCCcEEEecCCC--CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcccchhhee
Confidence 1 1122457777777789999988887 66774321000 000000111111122223455566665
Q ss_pred eCC-CceeeecCCCCcEEEEecccCC
Q 023500 205 WSR-EGIIASGAADDSVQFFVESKDD 229 (281)
Q Consensus 205 ~~~-~~~~~~~~~d~~~~~~~~~~~~ 229 (281)
.++ .|.+.+-.....++-|.+.+..
T Consensus 253 vDqsRg~ly~Lr~kS~Vray~itkng 278 (1263)
T COG5308 253 VDQSRGLLYVLRKKSAVRAYSITKNG 278 (1263)
T ss_pred ecccccceeeecccceeeeEeeeccc
Confidence 554 3555555555666666665543
No 421
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=84.34 E-value=11 Score=29.09 Aligned_cols=65 Identities=14% Similarity=0.208 Sum_probs=40.0
Q ss_pred EcCCCCEEEEeeCCCcEEEEecCCCceeeee-----eec-------CCCCCeeEEEEcCCCCEEEEecCCCcEEEEEe
Q 023500 11 WSPSGKLLATASFDATTCIWEDVGGDYECVA-----TLE-------GHENEVKSVSWNASGTLLATCGRDKSVWIWEV 76 (281)
Q Consensus 11 ~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~-----~~~-------~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~ 76 (281)
+...+++|+.-..+|.+.+||..+.+..... .+. .....|..+.++.+|.-|++-+. |....|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-GDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-CCEEEecc
Confidence 5567889988999999999998765421100 011 23455666666666665555443 45566654
No 422
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=84.29 E-value=25 Score=29.88 Aligned_cols=155 Identities=12% Similarity=0.165 Sum_probs=88.1
Q ss_pred EEEEcCCCC-EEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecC---CCcEEEEEecCCCeeE
Q 023500 8 SCAWSPSGK-LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR---DKSVWIWEVMPGNEFE 83 (281)
Q Consensus 8 ~~~~~~~~~-~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~---d~~v~~w~~~~~~~~~ 83 (281)
.+++++.+. .+++...++.+.+.|........... .+. .-..++++|++..+..+.. ++++.+.|-......
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~-vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~- 153 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIP-VGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT- 153 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEee-ecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE-
Confidence 567888777 56666667889998855543221111 222 4457899999877665544 566666665433321
Q ss_pred EeEeecCCccceeEEEecCCCCeEE-EEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee
Q 023500 84 CVSVLQGHAQDVKMVQWHPTMDVLF-SCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS 162 (281)
Q Consensus 84 ~~~~~~~~~~~v~~v~~~p~~~~l~-s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 162 (281)
.....+-.+ ..+.+.|+++.++ +-..++.+.+.+....... + ...... ..-......+.++|++.++....
T Consensus 154 -~~~~vG~~P--~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~--~--~~~~~~-~~~~~~P~~i~v~~~g~~~yV~~ 225 (381)
T COG3391 154 -ATIPVGNTP--TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV--R--GSVGSL-VGVGTGPAGIAVDPDGNRVYVAN 225 (381)
T ss_pred -EEEecCCCc--ceEEECCCCCeEEEEecCCCeEEEEeCCCccee--c--cccccc-cccCCCCceEEECCCCCEEEEEe
Confidence 222233222 7889999999554 4457889999875443210 0 000000 01112345688899998555443
Q ss_pred C-C--CcEEEEeCCc
Q 023500 163 D-D--LTIKIWGADI 174 (281)
Q Consensus 163 ~-d--~~i~~w~~~~ 174 (281)
. + +.+...|...
T Consensus 226 ~~~~~~~v~~id~~~ 240 (381)
T COG3391 226 DGSGSNNVLKIDTAT 240 (381)
T ss_pred ccCCCceEEEEeCCC
Confidence 3 2 4777776653
No 423
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=83.53 E-value=23 Score=28.90 Aligned_cols=116 Identities=16% Similarity=0.196 Sum_probs=65.8
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEecC-----CCceeeeeeecC-----CCCCeeEEEEcCCCC------------EEE
Q 023500 6 VRSCAWSPSGKLLATASFDATTCIWEDV-----GGDYECVATLEG-----HENEVKSVSWNASGT------------LLA 63 (281)
Q Consensus 6 i~~~~~~~~~~~l~tg~~d~~i~lw~~~-----~~~~~~~~~~~~-----h~~~v~~v~~~~~~~------------~l~ 63 (281)
-+-++++|.+.+-++....+...+||.. .-....+.++-. -....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4678999999988888888999999976 112122223221 123566777775433 357
Q ss_pred EecCCCcEEEEEecCCCee--EEeEeec-CCccce-eEEEecC--CCCeEEEEe-cCCeEEEEeC
Q 023500 64 TCGRDKSVWIWEVMPGNEF--ECVSVLQ-GHAQDV-KMVQWHP--TMDVLFSCS-YDNTIKVWWA 121 (281)
Q Consensus 64 s~~~d~~v~~w~~~~~~~~--~~~~~~~-~~~~~v-~~v~~~p--~~~~l~s~s-~d~~v~~w~~ 121 (281)
.+++||+|.-|.-...... ....++. .....| ..+++.. .++.|+.+- ..++|.++|-
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~ 169 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKG 169 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecC
Confidence 7889999999984333220 0111111 111223 3444443 345555443 4568888754
No 424
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.28 E-value=5.3 Score=31.97 Aligned_cols=56 Identities=21% Similarity=0.370 Sum_probs=42.3
Q ss_pred EEcCCCCEEEEeeCC-----CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEec
Q 023500 10 AWSPSGKLLATASFD-----ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCG 66 (281)
Q Consensus 10 ~~~~~~~~l~tg~~d-----~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~ 66 (281)
.|||||++|...-+| |.|=|||.. ..+..+..+..|.-.=..+.+.+||+.++.+.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r-~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAR-EGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecc-cccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 589999988655444 568899875 44556777777777677889999999887764
No 425
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=82.75 E-value=26 Score=32.26 Aligned_cols=107 Identities=16% Similarity=0.135 Sum_probs=66.2
Q ss_pred CCEEEEecCCCcEEEEEecC-------C----Ce------eEEeEeecCCccceeEEEec--CCCCeEEEEecCCeEEEE
Q 023500 59 GTLLATCGRDKSVWIWEVMP-------G----NE------FECVSVLQGHAQDVKMVQWH--PTMDVLFSCSYDNTIKVW 119 (281)
Q Consensus 59 ~~~l~s~~~d~~v~~w~~~~-------~----~~------~~~~~~~~~~~~~v~~v~~~--p~~~~l~s~s~d~~v~~w 119 (281)
...|+.+.+||.|.+|.+.. . .. ..+-..+.- ..-+.+++++ ....+||.++....|-||
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v-~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRV-GASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeec-CCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 45788999999999997631 0 00 001111221 2346788888 777788888888888888
Q ss_pred eCCCCCCCCceeeeeeeeccCCccccEEEEEEccCC---C---EEEEeeCCCcEEEEeC
Q 023500 120 WAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG---D---KLVSCSDDLTIKIWGA 172 (281)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~---~l~s~~~d~~i~~w~~ 172 (281)
.+...+.... ... ...|...|.++.|-++. . .+++++=.|.+-+|++
T Consensus 193 af~l~~~r~~-~~~-----s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFY-HVP-----SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccc-ccc-----ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 6654311110 000 01244568889997643 2 6777888998888876
No 426
>PHA02790 Kelch-like protein; Provisional
Probab=82.17 E-value=35 Score=30.05 Aligned_cols=63 Identities=8% Similarity=0.073 Sum_probs=37.2
Q ss_pred CCCCEEEEeeCCC--cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCC---cEEEEEec
Q 023500 13 PSGKLLATASFDA--TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDK---SVWIWEVM 77 (281)
Q Consensus 13 ~~~~~l~tg~~d~--~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~---~v~~w~~~ 77 (281)
-++.+.+.||.++ .+..||+.++++..+..+.........+ .-+|+..+.||.++ ++..||..
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~ 384 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPN 384 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCC
Confidence 3677888888643 5778888777665555443222222222 23677777777653 45667754
No 427
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=82.00 E-value=23 Score=30.41 Aligned_cols=69 Identities=22% Similarity=0.282 Sum_probs=44.1
Q ss_pred EEEEcCCCCEEEEeeCCCcEEE---EecC-----CCceee--eeeecCCC-CCeeEEEEc-----------CCCCEEEEe
Q 023500 8 SCAWSPSGKLLATASFDATTCI---WEDV-----GGDYEC--VATLEGHE-NEVKSVSWN-----------ASGTLLATC 65 (281)
Q Consensus 8 ~~~~~~~~~~l~tg~~d~~i~l---w~~~-----~~~~~~--~~~~~~h~-~~v~~v~~~-----------~~~~~l~s~ 65 (281)
.++.+|++++||.+..+..+.+ |+.. .+.+.. ...+..-. +.|+++.+- ||...++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4678999999999988886665 6331 122211 12222111 466666543 345678999
Q ss_pred cCCCcEEEEEe
Q 023500 66 GRDKSVWIWEV 76 (281)
Q Consensus 66 ~~d~~v~~w~~ 76 (281)
-.+|.|+++..
T Consensus 86 ~ssG~vrfyte 96 (415)
T PF14655_consen 86 TSSGYVRFYTE 96 (415)
T ss_pred ecccEEEEEec
Confidence 99999999986
No 428
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.60 E-value=37 Score=29.97 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=21.9
Q ss_pred EEEEEEccCC---CEEEEeeCCCcEEEEeCC
Q 023500 146 IWALSFNAKG---DKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 146 v~~~~~~~~~---~~l~s~~~d~~i~~w~~~ 173 (281)
+..++|+|+. ..|..-+.|..||+|+..
T Consensus 168 l~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS 198 (741)
T KOG4460|consen 168 LKQAAWHPSSILDPHLVLLTSDNVIRIYSLS 198 (741)
T ss_pred eeeccccCCccCCceEEEEecCcEEEEEecC
Confidence 4557888865 577788889999999864
No 429
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=81.22 E-value=30 Score=28.71 Aligned_cols=31 Identities=23% Similarity=0.488 Sum_probs=23.0
Q ss_pred CeeEEEEcCCCCeeEE-EeCCCCeEEEEEccc
Q 023500 249 DVNSVQWSPGERRLLA-SASDDGMIKIWELAN 279 (281)
Q Consensus 249 ~v~~~~~~~~~~~~~~-s~~~Dg~v~iw~~~~ 279 (281)
++.+++.+.+.+.+|. ....++.|.+||..+
T Consensus 290 ~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t 321 (342)
T PF06433_consen 290 PIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT 321 (342)
T ss_dssp EESEEEEESSSS-EEEEEETTTTEEEEEETTT
T ss_pred ccceEEEccCCCcEEEEEcCCCCeEEEEeCcC
Confidence 5778999887765554 456689999999765
No 430
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=81.21 E-value=0.23 Score=42.28 Aligned_cols=143 Identities=16% Similarity=0.358 Sum_probs=91.1
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEE-EEecCCCcEEEEEecCCCeeEEeEe
Q 023500 9 CAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLL-ATCGRDKSVWIWEVMPGNEFECVSV 87 (281)
Q Consensus 9 ~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~~~d~~v~~w~~~~~~~~~~~~~ 87 (281)
..|.|.+.-++.++.+..+..||..+... -... .++....++|..+|..+ +.+-..+.+.+||+..... +.+.
T Consensus 40 ~~w~~e~~nlavaca~tiv~~YD~agq~~---le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqLE- 113 (615)
T KOG2247|consen 40 HRWRPEGHNLAVACANTIVIYYDKAGQVI---LELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQLE- 113 (615)
T ss_pred eeEecCCCceehhhhhhHHHhhhhhccee---cccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHHh-
Confidence 45778776688888899999998654321 1111 34555677888877764 4556678999999965432 1111
Q ss_pred ecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCC-ccccEEEEEEccCCCEEEEeeCCCc
Q 023500 88 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNG-HSSTIWALSFNAKGDKLVSCSDDLT 166 (281)
Q Consensus 88 ~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~ 166 (281)
.+....-.-+.|++....++.+-..+.+.++.....+. .. ..| |..++.++++.+.+ +.+.++.|.+
T Consensus 114 -~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~--------ii--v~Gkh~RRgtq~av~lEd-~vil~dcd~~ 181 (615)
T KOG2247|consen 114 -SGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRR--------II--VMGKHQRRGTQIAVTLED-YVILCDCDNT 181 (615)
T ss_pred -ccCcchHHHHhhccCCccccccccccceEEEeccchhh--------hh--hhcccccceeEEEecccc-eeeecCcHHH
Confidence 11122223367888888888888889999985443321 11 124 88889999999886 5556666655
Q ss_pred EEE
Q 023500 167 IKI 169 (281)
Q Consensus 167 i~~ 169 (281)
+.+
T Consensus 182 L~v 184 (615)
T KOG2247|consen 182 LSV 184 (615)
T ss_pred HHH
Confidence 543
No 431
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=80.96 E-value=11 Score=33.82 Aligned_cols=69 Identities=17% Similarity=0.198 Sum_probs=39.1
Q ss_pred CCCCEEEEecCCCcEEEEEecC----CCeeEEeE--------eec-----------CCccceeEEEecC----CCCeEEE
Q 023500 57 ASGTLLATCGRDKSVWIWEVMP----GNEFECVS--------VLQ-----------GHAQDVKMVQWHP----TMDVLFS 109 (281)
Q Consensus 57 ~~~~~l~s~~~d~~v~~w~~~~----~~~~~~~~--------~~~-----------~~~~~v~~v~~~p----~~~~l~s 109 (281)
++...++.+..||.+....... +....... .+. .-......+..++ +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3666777788888888777653 11111100 000 0123345566666 6678999
Q ss_pred EecCCeEEEEeCCCCC
Q 023500 110 CSYDNTIKVWWAEDTD 125 (281)
Q Consensus 110 ~s~d~~v~~w~~~~~~ 125 (281)
.+.|+++|+|++.+..
T Consensus 236 l~~D~~LRiW~l~t~~ 251 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQ 251 (547)
T ss_dssp EETTSEEEEEETTTTC
T ss_pred EeCCCeEEEEECCCCe
Confidence 9999999999987653
No 432
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=80.20 E-value=37 Score=29.08 Aligned_cols=150 Identities=13% Similarity=0.190 Sum_probs=77.5
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeE--E
Q 023500 7 RSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE--C 84 (281)
Q Consensus 7 ~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~--~ 84 (281)
..+..+++|.+++.|.....++-||.-..-+..+. ..-...+..+.|.+++..++.+ .+|.+. |....+...+ .
T Consensus 242 ~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~--~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~ 317 (398)
T PLN00033 242 STVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHN--RASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFD 317 (398)
T ss_pred eeEEEcCCCCEEEEECCccEEEecCCCCcceEEec--CCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccc
Confidence 34556778887776654433334433211122222 2334678899999998887766 445543 4433332111 0
Q ss_pred eEeec--CCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee
Q 023500 85 VSVLQ--GHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS 162 (281)
Q Consensus 85 ~~~~~--~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 162 (281)
..... .....+..+.|.+++.. +.++..|.+..... .-..|+..... ..-....+.+.|.++++-+++|
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~~-~a~G~~G~v~~s~D---~G~tW~~~~~~----~~~~~~ly~v~f~~~~~g~~~G- 388 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKEA-WAAGGSGILLRSTD---GGKSWKRDKGA----DNIAANLYSVKFFDDKKGFVLG- 388 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCcE-EEEECCCcEEEeCC---CCcceeEcccc----CCCCcceeEEEEcCCCceEEEe-
Confidence 11111 11234788888877655 45566787766421 11223322111 1123456788887776666554
Q ss_pred CCCcEEE
Q 023500 163 DDLTIKI 169 (281)
Q Consensus 163 ~d~~i~~ 169 (281)
.+|.|--
T Consensus 389 ~~G~il~ 395 (398)
T PLN00033 389 NDGVLLR 395 (398)
T ss_pred CCcEEEE
Confidence 5666543
No 433
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.45 E-value=60 Score=31.61 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=23.4
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEec
Q 023500 6 VRSCAWSPSGKLLATASFDATTCIWED 32 (281)
Q Consensus 6 i~~~~~~~~~~~l~tg~~d~~i~lw~~ 32 (281)
...++|+|...++|.|..+|.+++|-.
T Consensus 38 ~~~~afD~~q~llai~t~tg~i~~yg~ 64 (993)
T KOG1983|consen 38 PSALAFDPTQGLLAIGTRTGAIKIYGQ 64 (993)
T ss_pred CcceeeccccceEEEEEecccEEEecc
Confidence 346789999999999999999999853
No 434
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=79.27 E-value=35 Score=28.33 Aligned_cols=43 Identities=7% Similarity=0.044 Sum_probs=23.1
Q ss_pred CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC
Q 023500 25 ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD 68 (281)
Q Consensus 25 ~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d 68 (281)
+.+..||+.++++..+..+..-...-.++. ..++++.+.||.+
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~-~~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIV-HKGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEE-EECCEEEEEeeee
Confidence 457889988887765544421111112222 2356777777653
No 435
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=78.92 E-value=11 Score=28.87 Aligned_cols=52 Identities=15% Similarity=0.203 Sum_probs=37.0
Q ss_pred CCC-CEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEe
Q 023500 13 PSG-KLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATC 65 (281)
Q Consensus 13 ~~~-~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~ 65 (281)
..| +.|..+...+.|.+|+..+........+. --+.|..+.++..|++|+|-
T Consensus 25 ~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTl 77 (215)
T PF14761_consen 25 CGGPDALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTL 77 (215)
T ss_pred ccCCceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEE
Confidence 335 44444455578999998755555566665 34889999999999999984
No 436
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=76.96 E-value=44 Score=31.20 Aligned_cols=146 Identities=9% Similarity=0.117 Sum_probs=72.3
Q ss_pred EEEEeeCCCcEEEEecCCC-ceeeee-eecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeE--EeEeecCCc
Q 023500 17 LLATASFDATTCIWEDVGG-DYECVA-TLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE--CVSVLQGHA 92 (281)
Q Consensus 17 ~l~tg~~d~~i~lw~~~~~-~~~~~~-~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~--~~~~~~~~~ 92 (281)
-+..|+.++.+.|+....+ ..+... ....-...+.++.+++.. +..|..||++-++-=.....+. +...+..-.
T Consensus 549 Tic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~S--lgagl~dgt~a~y~rap~gSwd~ep~~~~~~g~ 626 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSGS--LGAGLIDGTLAVYGRAPSGSWDGEPNISIPTGS 626 (925)
T ss_pred cccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhccccc--cccCccCCccccccCCCCCCCCCCCccccccCC
Confidence 4567888999999976522 222222 222334566666665532 4445555554443211111100 111111122
Q ss_pred cceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeC
Q 023500 93 QDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA 172 (281)
Q Consensus 93 ~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~ 172 (281)
..|++..+..+ .+.++.+|.|.++..++.. ..+ .+. ....|...|+++.+...+-.++-.+ ...++.++.
T Consensus 627 lPvrsla~~ed---~~was~gG~V~vi~~tt~~-~~~----~le-ahqee~~~Vthm~~~~~gVwvafas-G~~~rlfht 696 (925)
T KOG3522|consen 627 LPVRSLAFQED---FVWASEGGCVHVIPSTTFI-RSW----DLE-AHQEEAHSVTHMLYLDNGVWVAFAS-GDEERLFHT 696 (925)
T ss_pred ccccchhhhhc---eeeeecCCceEEEechhcc-ccc----hhH-HHHhhcceEEEEEeeCCceEEEEcC-CCEEEEecc
Confidence 34555554443 5677899999998665431 111 111 1112456688888876664433333 335666665
Q ss_pred Cc
Q 023500 173 DI 174 (281)
Q Consensus 173 ~~ 174 (281)
+.
T Consensus 697 et 698 (925)
T KOG3522|consen 697 ET 698 (925)
T ss_pred cc
Confidence 43
No 437
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=74.62 E-value=44 Score=27.04 Aligned_cols=61 Identities=11% Similarity=0.249 Sum_probs=39.7
Q ss_pred ccceeEEEEcCCCCEEEEee------CCCcEEEEecCCCceeeeee-e-cCCCCCeeEEEEcC-CCCEEE
Q 023500 3 TRTVRSCAWSPSGKLLATAS------FDATTCIWEDVGGDYECVAT-L-EGHENEVKSVSWNA-SGTLLA 63 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~------~d~~i~lw~~~~~~~~~~~~-~-~~h~~~v~~v~~~~-~~~~l~ 63 (281)
++.|+.+.|..+.++++.|. ....+..||..+..+..... . ..-.++|..+.+.. ++..+.
T Consensus 36 ~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~ 105 (281)
T PF12768_consen 36 SGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALTFISNDGSNFW 105 (281)
T ss_pred eEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEEeeccCCceEE
Confidence 35789999997778888775 34568889987776543332 1 12347888887743 444443
No 438
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=74.43 E-value=8.2 Score=18.57 Aligned_cols=23 Identities=13% Similarity=0.290 Sum_probs=14.4
Q ss_pred eEEEEcCCCCEEEEecCCCcEEE
Q 023500 51 KSVSWNASGTLLATCGRDKSVWI 73 (281)
Q Consensus 51 ~~v~~~~~~~~l~s~~~d~~v~~ 73 (281)
..++.+++|+.+++-.....|++
T Consensus 5 ~gvav~~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGNHRVQV 27 (28)
T ss_dssp EEEEEETTSEEEEEECCCTEEEE
T ss_pred cEEEEeCCCCEEEEECCCCEEEE
Confidence 35666677777666666665554
No 439
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=74.40 E-value=40 Score=26.45 Aligned_cols=101 Identities=12% Similarity=0.151 Sum_probs=56.9
Q ss_pred eEEEecCCCC-eEEEEecCCeEEEEe--CCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeC
Q 023500 96 KMVQWHPTMD-VLFSCSYDNTIKVWW--AEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA 172 (281)
Q Consensus 96 ~~v~~~p~~~-~l~s~s~d~~v~~w~--~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~ 172 (281)
+.++|..+.. ..++-+.+.+|.-|+ .........+.+..+.....--....-.++...+|.+.+++-+.++|...|.
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp 240 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP 240 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence 5678887655 456778888998888 4444333333333333211100111223444557777888888888888877
Q ss_pred CccccccCCCCcccceeEEeecccCcceEEEEeCCC
Q 023500 173 DITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE 208 (281)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 208 (281)
..++... .+. .....+.+++|...
T Consensus 241 ~tGK~L~-----------eik-lPt~qitsccFgGk 264 (310)
T KOG4499|consen 241 TTGKILL-----------EIK-LPTPQITSCCFGGK 264 (310)
T ss_pred CCCcEEE-----------EEE-cCCCceEEEEecCC
Confidence 6554321 111 23566777877643
No 440
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=74.03 E-value=58 Score=28.12 Aligned_cols=113 Identities=19% Similarity=0.259 Sum_probs=54.8
Q ss_pred CCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC-----CceeeecCCCCcEEEEecccCC
Q 023500 155 GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR-----EGIIASGAADDSVQFFVESKDD 229 (281)
Q Consensus 155 ~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~ 229 (281)
.+.++.|+.+|.++||+.........+ + .+..-...+|..+...+ +...++.-.-+.+.+|.+...+
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~-------l-llE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~ 108 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPED-------L-LLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVD 108 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCcc-------E-EEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecC
Confidence 468999999999999977432211110 1 11111346677665432 1223333445556666552211
Q ss_pred C--cCCccceeeeeeccCCCCC--eeEEEEcCC----CCeeEEEeCCCCeEEEEEc
Q 023500 230 L--IDGPSYKMLLKKEKAHDMD--VNSVQWSPG----ERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 230 ~--~~~~~~~~~~~~~~~h~~~--v~~~~~~~~----~~~~~~s~~~Dg~v~iw~~ 277 (281)
- ..+.... +.....|.-. ...+..-|- ++.+++.=+-||.+.+++-
T Consensus 109 g~~~~g~~~~--L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feq 162 (418)
T PF14727_consen 109 GTVEHGNQYQ--LELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQ 162 (418)
T ss_pred CCcccCcEEE--EEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeC
Confidence 1 1111111 1111223222 122222222 2456777888999999874
No 441
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=74.02 E-value=42 Score=26.50 Aligned_cols=139 Identities=13% Similarity=0.191 Sum_probs=64.1
Q ss_pred EEEEecCCCceeeeeeecCCCCCeeEE--EEcCCCCEEEEecC-C--CcEEEEEecCC---CeeEE-eEeecCCccceeE
Q 023500 27 TCIWEDVGGDYECVATLEGHENEVKSV--SWNASGTLLATCGR-D--KSVWIWEVMPG---NEFEC-VSVLQGHAQDVKM 97 (281)
Q Consensus 27 i~lw~~~~~~~~~~~~~~~h~~~v~~v--~~~~~~~~l~s~~~-d--~~v~~w~~~~~---~~~~~-~~~~~~~~~~v~~ 97 (281)
-.+||..++++..+.. ...++|- .|-|||++|.+||. | ..+++++-... ..+.. ...+. ....=-.
T Consensus 48 s~~yD~~tn~~rpl~v----~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT 122 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTV----QTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPT 122 (243)
T ss_pred EEEEecCCCcEEeccC----CCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCcccc
Confidence 3578888877654432 1223333 56789999999875 2 46777774330 11100 00010 0000012
Q ss_pred EEecCCCCeEEEEecCC-eEEEEeCCCCCCCCceeeeeeeeccCCc-cccEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 023500 98 VQWHPTMDVLFSCSYDN-TIKVWWAEDTDSDNWHCVQTISESNNGH-SSTIWALSFNAKGDKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 98 v~~~p~~~~l~s~s~d~-~v~~w~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~ 173 (281)
+.--|++..++.|+.+. +.-+|.-........ ....+....... ...-.-+-..|+|+.|+.+..++. +||.+
T Consensus 123 ~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~-~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~--i~d~~ 197 (243)
T PF07250_consen 123 ATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPV-TLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSI--IYDYK 197 (243)
T ss_pred ceECCCCCEEEEeCcCCCcccccCCccCCCCce-eeecchhhhccCccccCceEEEcCCCCEEEEEcCCcE--EEeCC
Confidence 22346788877777764 333432211111000 010111000000 111123455689988888877654 45544
No 442
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=73.74 E-value=8.1 Score=20.30 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=14.7
Q ss_pred CCCCeeEEEeCCCCeEEEEEcc
Q 023500 257 PGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 257 ~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
|++++++++...++.|.++|..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~ 22 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTA 22 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECC
Confidence 4556667666667777777754
No 443
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=73.26 E-value=9 Score=24.62 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=26.0
Q ss_pred CeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 249 DVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 249 ~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
..+.|..+|+++.++++....+.|++|+..
T Consensus 55 ~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 55 FANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 357899999988888899999999999875
No 444
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=73.16 E-value=61 Score=27.98 Aligned_cols=146 Identities=12% Similarity=0.178 Sum_probs=80.8
Q ss_pred CEEEEeeCCCcEEEEecCCCceee---eeeecCCCCCeeEEEEc---C-CCCEEEEecCCCcEEEEEecCCC-e-----e
Q 023500 16 KLLATASFDATTCIWEDVGGDYEC---VATLEGHENEVKSVSWN---A-SGTLLATCGRDKSVWIWEVMPGN-E-----F 82 (281)
Q Consensus 16 ~~l~tg~~d~~i~lw~~~~~~~~~---~~~~~~h~~~v~~v~~~---~-~~~~l~s~~~d~~v~~w~~~~~~-~-----~ 82 (281)
..++.||..|.++||++..+.... +-.. .-..+|..+..- + .....++-=.-+.+.++.+.... . .
T Consensus 38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred cEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence 588899999999999986544321 1111 134677766542 2 22222222444677777763211 0 0
Q ss_pred EEeEeecCC-----ccceeEEEecCC--CCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCC
Q 023500 83 ECVSVLQGH-----AQDVKMVQWHPT--MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG 155 (281)
Q Consensus 83 ~~~~~~~~~-----~~~v~~v~~~p~--~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 155 (281)
-.+.....| ....++..|... ...+..-|-||++.+++-+.-. ....+. ..-.++ .+.|.+..
T Consensus 117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~-----f~~~lp--~~llPg---Pl~Y~~~t 186 (418)
T PF14727_consen 117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA-----FSRFLP--DFLLPG---PLCYCPRT 186 (418)
T ss_pred EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE-----EEEEcC--CCCCCc---CeEEeecC
Confidence 111111222 222233334332 3578889999999999554321 011111 111233 47888888
Q ss_pred CEEEEeeCCCcEEEEeC
Q 023500 156 DKLVSCSDDLTIKIWGA 172 (281)
Q Consensus 156 ~~l~s~~~d~~i~~w~~ 172 (281)
+.|++++.+..+.-|..
T Consensus 187 Dsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 187 DSFVTASSSWTLECYKY 203 (418)
T ss_pred CEEEEecCceeEEEecH
Confidence 89999999988888853
No 445
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=72.09 E-value=59 Score=27.40 Aligned_cols=111 Identities=14% Similarity=0.153 Sum_probs=53.4
Q ss_pred eeEEEEcCCCCEEEEec-----------CCC-cEEEEEecCC-CeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeE
Q 023500 50 VKSVSWNASGTLLATCG-----------RDK-SVWIWEVMPG-NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 116 (281)
Q Consensus 50 v~~v~~~~~~~~l~s~~-----------~d~-~v~~w~~~~~-~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v 116 (281)
-..++|.++|+++++-. ..+ .|.+++-..+ ........+...-...+.+.+.+++ ++++ +.....
T Consensus 16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~~i~ 93 (367)
T TIGR02604 16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPPDIL 93 (367)
T ss_pred CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCCeEE
Confidence 35788889988877643 122 5655543322 1222223333333345788888888 5554 333322
Q ss_pred EEEeCCCCCCC--Cceeeee-eeeccCCccccEEEEEEccCCCEEEEee
Q 023500 117 KVWWAEDTDSD--NWHCVQT-ISESNNGHSSTIWALSFNAKGDKLVSCS 162 (281)
Q Consensus 117 ~~w~~~~~~~~--~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 162 (281)
++.+.+..... ..+.+.. +......+......+.|.|++.+.++-+
T Consensus 94 ~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 94 FLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 33333221101 1111111 1110000123467899999987655544
No 446
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=71.99 E-value=8.4 Score=35.45 Aligned_cols=107 Identities=21% Similarity=0.375 Sum_probs=59.4
Q ss_pred EEEEcCCCCEEEEeeCCC-----cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCee
Q 023500 8 SCAWSPSGKLLATASFDA-----TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF 82 (281)
Q Consensus 8 ~~~~~~~~~~l~tg~~d~-----~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~ 82 (281)
.+.|-|+|..+||-+.|| .+..++.++-.-...-.-.+-++.+..+.|+-....++. +..+.+++|...+-.-+
T Consensus 251 ~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav-~~~n~~~lwttkNyhWY 329 (1243)
T COG5290 251 QLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAV-AEGNLLKLWTTKNYHWY 329 (1243)
T ss_pred ccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHH-hhcceEEEEEccceEEE
Confidence 378999999999877554 356665544221111011233455667777665544443 34478999987544322
Q ss_pred EEeEeecCCccceeEEEecCCCC-eEEEEecCCeEEE
Q 023500 83 ECVSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKV 118 (281)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~ 118 (281)
+.. .-..+.+.-++|||... .++........++
T Consensus 330 --LK~-e~~ip~~s~vkwhpe~~nTl~f~d~~~I~~V 363 (1243)
T COG5290 330 --LKV-ERQIPGISYVKWHPEEKNTLLFRDGERILRV 363 (1243)
T ss_pred --EEE-eecCCCcceeeeccccCcEEEEecCCeEEEE
Confidence 111 12345678899999754 3443333333344
No 447
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=69.55 E-value=1.1e+02 Score=29.30 Aligned_cols=147 Identities=16% Similarity=0.238 Sum_probs=76.7
Q ss_pred eCCCcEEEEecCC-CceeeeeeecCCCCCeeEEE-EcCCCC-------EEEEecCCCcEEEEEecCCCeeEEeEeec---
Q 023500 22 SFDATTCIWEDVG-GDYECVATLEGHENEVKSVS-WNASGT-------LLATCGRDKSVWIWEVMPGNEFECVSVLQ--- 89 (281)
Q Consensus 22 ~~d~~i~lw~~~~-~~~~~~~~~~~h~~~v~~v~-~~~~~~-------~l~s~~~d~~v~~w~~~~~~~~~~~~~~~--- 89 (281)
..|+.+.||+.+. +++.++..++ | .|.-|+ +.|..+ .++.-+....+.+.-+...........+.
T Consensus 99 T~dnkLiLWnynn~neyq~idd~s-h--tIlkVkLvrPkantFvs~i~hlL~vAT~~e~~ilgvs~d~~T~Els~fnTgl 175 (1263)
T COG5308 99 TNDNKLILWNYNNSNEYQEIDDFS-H--TILKVKLVRPKANTFVSRISHLLFVATEKEVMILGVSKDTKTGELSLFNTGL 175 (1263)
T ss_pred EcCCEEEEEecCCCcchhhhhhhh-h--heeEEEEeccCCcccHHhhhhhhhhhhhheeeEEEEEeccccceeEEEecce
Confidence 4689999999864 3444443333 2 233332 233322 22222233445555543222111111111
Q ss_pred ---CCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCce-------eeee-----ee---eccCCccccEEEEEE
Q 023500 90 ---GHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWH-------CVQT-----IS---ESNNGHSSTIWALSF 151 (281)
Q Consensus 90 ---~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~-------~~~~-----~~---~~~~~h~~~v~~~~~ 151 (281)
-..-.|.|+.-+.+|+.+++|-.| ..+|.+.-...+.|. |+.. +. .....|...+..++.
T Consensus 176 ~vsvqGinV~civs~e~GrIFf~g~~d--~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipgetI~Ql~v 253 (1263)
T COG5308 176 VVSVQGINVRCIVSEEDGRIFFGGEND--PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGETIKQLAV 253 (1263)
T ss_pred EEeccCceeEEEEeccCCcEEEecCCC--CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcccchhheee
Confidence 123467788778889999998888 666755322222220 1000 00 001134466777888
Q ss_pred ccCCCEEEEeeCCCcEEEEeCC
Q 023500 152 NAKGDKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 152 ~~~~~~l~s~~~d~~i~~w~~~ 173 (281)
......|.+-+....|+-|.+.
T Consensus 254 DqsRg~ly~Lr~kS~Vray~it 275 (1263)
T COG5308 254 DQSRGLLYVLRKKSAVRAYSIT 275 (1263)
T ss_pred cccccceeeecccceeeeEeee
Confidence 7777788888888888888653
No 448
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.53 E-value=62 Score=26.25 Aligned_cols=56 Identities=16% Similarity=0.237 Sum_probs=40.1
Q ss_pred EEcCCCCEEEEecCC-----CcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEe
Q 023500 54 SWNASGTLLATCGRD-----KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS 111 (281)
Q Consensus 54 ~~~~~~~~l~s~~~d-----~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s 111 (281)
.|||||.+|...=.| |.|=+||.. ..++.+..+.+|.-.-..+.|.+|+.+++.+.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r--~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAR--EGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecc--cccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 489999998765332 578889876 33345566777766667888999999887743
No 449
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=68.09 E-value=21 Score=31.28 Aligned_cols=61 Identities=16% Similarity=0.278 Sum_probs=44.0
Q ss_pred CCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEec
Q 023500 14 SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVM 77 (281)
Q Consensus 14 ~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~ 77 (281)
...++|.||.-|.|+|||..+..- ...+-+-...|..|..+.+|.++++.+. ..+.+-|+.
T Consensus 572 esGyIa~as~kGDirLyDRig~rA--KtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRA--KTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred cCceEEEecCCCceeeehhhcchh--hhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 345899999999999999765421 2334556678889999999998776665 356666653
No 450
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=67.23 E-value=56 Score=25.18 Aligned_cols=51 Identities=24% Similarity=0.378 Sum_probs=33.7
Q ss_pred CeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeC
Q 023500 105 DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD 163 (281)
Q Consensus 105 ~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 163 (281)
+.|+.+...+.|.+|++...... ...++. .-+.|..+.++..|++|+|--.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~---~~~~F~-----Tv~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECP---LLCTFS-----TVGRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCc---eeEEEc-----chhheeEEEeccccceEEEEEe
Confidence 44444467788999998743221 122222 2367899999999999999653
No 451
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=66.91 E-value=1.2e+02 Score=29.09 Aligned_cols=77 Identities=17% Similarity=0.204 Sum_probs=48.6
Q ss_pred CCCCeeEEEEcCCC------CEEEEecCCCcEEEEEecCCCeeEEeEeecCC--ccceeEEEecCCCCeEEEEecCCeEE
Q 023500 46 HENEVKSVSWNASG------TLLATCGRDKSVWIWEVMPGNEFECVSVLQGH--AQDVKMVQWHPTMDVLFSCSYDNTIK 117 (281)
Q Consensus 46 h~~~v~~v~~~~~~------~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~--~~~v~~v~~~p~~~~l~s~s~d~~v~ 117 (281)
....|.|+.++|-| ++++.|..+..+.+-...+.....+...+.+. ...|-...+-.+..+|..+..||.+.
T Consensus 529 ~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~ 608 (1096)
T KOG1897|consen 529 FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALL 608 (1096)
T ss_pred ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEE
Confidence 34689999999842 26888888877776665544433333322221 12233445556678899999999987
Q ss_pred EEeCC
Q 023500 118 VWWAE 122 (281)
Q Consensus 118 ~w~~~ 122 (281)
.+-+.
T Consensus 609 ~fv~d 613 (1096)
T KOG1897|consen 609 YFVLD 613 (1096)
T ss_pred EEEEE
Confidence 66443
No 452
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=64.82 E-value=23 Score=31.00 Aligned_cols=61 Identities=10% Similarity=0.217 Sum_probs=41.2
Q ss_pred CCceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 207 REGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 207 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
.+|++++++..|.+++|+--.. . .+.. ..+....|..+..+.+|+.++|||- ..|.+-|+.
T Consensus 572 esGyIa~as~kGDirLyDRig~-----r-AKta---lP~lG~aIk~idvta~Gk~ilaTCk--~yllL~d~~ 632 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGK-----R-AKTA---LPGLGDAIKHIDVTANGKHILATCK--NYLLLTDVP 632 (776)
T ss_pred cCceEEEecCCCceeeehhhcc-----h-hhhc---CcccccceeeeEeecCCcEEEEeec--ceEEEEecc
Confidence 3678999999999999943211 0 1111 1234456888888899999998884 467676654
No 453
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=63.70 E-value=1.7 Score=37.29 Aligned_cols=142 Identities=18% Similarity=0.227 Sum_probs=83.9
Q ss_pred eEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCe-EEEEecCCeEEEEeCCCCCCCCc
Q 023500 51 KSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDV-LFSCSYDNTIKVWWAEDTDSDNW 129 (281)
Q Consensus 51 ~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~-l~s~s~d~~v~~w~~~~~~~~~~ 129 (281)
....|.|.+.-++.++.+..+..+|-. ++ ..... -.....-.++|.-++.. ++.+-..+.+.+|++.+..
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~a-gq---~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey---- 108 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKA-GQ---VILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY---- 108 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhh-cc---eeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhh----
Confidence 345678877778888888888878732 11 11111 11233445566666664 4455677899999987542
Q ss_pred eeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc
Q 023500 130 HCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG 209 (281)
Q Consensus 130 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 209 (281)
.+++... ..|.. .-+.|++....++.+-..|.+.+++..+.+... ..+-|.+.+.++++.+++
T Consensus 109 --tqqLE~g-g~~s~--sll~wsKg~~el~ig~~~gn~viynhgtsR~ii------------v~Gkh~RRgtq~av~lEd 171 (615)
T KOG2247|consen 109 --TQQLESG-GTSSK--SLLAWSKGTPELVIGNNAGNIVIYNHGTSRRII------------VMGKHQRRGTQIAVTLED 171 (615)
T ss_pred --HHHHhcc-CcchH--HHHhhccCCccccccccccceEEEeccchhhhh------------hhcccccceeEEEecccc
Confidence 1122211 11222 237888888888888899999999765432211 112255667777777776
Q ss_pred eeeecCCCC
Q 023500 210 IIASGAADD 218 (281)
Q Consensus 210 ~~~~~~~d~ 218 (281)
+++.++.|.
T Consensus 172 ~vil~dcd~ 180 (615)
T KOG2247|consen 172 YVILCDCDN 180 (615)
T ss_pred eeeecCcHH
Confidence 665555443
No 454
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=62.26 E-value=88 Score=25.73 Aligned_cols=119 Identities=11% Similarity=0.088 Sum_probs=63.6
Q ss_pred CeeEEEEcCCCCEEEEecC---------CCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEE-EEecCCeEEE
Q 023500 49 EVKSVSWNASGTLLATCGR---------DKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLF-SCSYDNTIKV 118 (281)
Q Consensus 49 ~v~~v~~~~~~~~l~s~~~---------d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~-s~s~d~~v~~ 118 (281)
.-+.+...|+|++-++... -..-.+|.+..... .++.+..+-..-+.++|+|+++.++ +=+..+.|.-
T Consensus 112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~--~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r 189 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGG--VVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHR 189 (307)
T ss_pred CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCC--EEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEE
Confidence 4467788899887665444 11224666653221 2333444445568999999997654 5444577776
Q ss_pred EeCCCC--CCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCC-cEEEEeCC
Q 023500 119 WWAEDT--DSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDL-TIKIWGAD 173 (281)
Q Consensus 119 w~~~~~--~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~-~i~~w~~~ 173 (281)
++.... .....+. ... ....++..=.++...+|.+.+++...| .|..|+.+
T Consensus 190 ~~~d~~~g~~~~~~~---~~~-~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 190 YDLDPATGPIGGRRG---FVD-FDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred EecCcccCccCCcce---EEE-ccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence 666521 1111100 000 011223344456666776664444333 78888766
No 455
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=62.05 E-value=22 Score=32.81 Aligned_cols=32 Identities=13% Similarity=0.179 Sum_probs=27.0
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCC
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGG 35 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~ 35 (281)
..++.+.-+|.|+-++.+..||+|.+|+....
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r 46 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPR 46 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeeccc
Confidence 34677888899999999999999999986543
No 456
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=61.90 E-value=79 Score=25.09 Aligned_cols=61 Identities=15% Similarity=0.297 Sum_probs=42.1
Q ss_pred CCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCC
Q 023500 58 SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDT 124 (281)
Q Consensus 58 ~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~ 124 (281)
.+++|+.|..+| +.++++..... ..+... ...|..+..-|+-+.++.-+ |+.+.++++...
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~--~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l 66 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSK--PTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSL 66 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCcc--ceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhh
Confidence 578899998888 88888832222 122221 22388999999888777665 599999987654
No 457
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=59.70 E-value=67 Score=27.91 Aligned_cols=156 Identities=13% Similarity=0.140 Sum_probs=75.9
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCC----Cee-EEEEcCCCCEEEEecCCCcEEEE-EecC
Q 023500 5 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHEN----EVK-SVSWNASGTLLATCGRDKSVWIW-EVMP 78 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~----~v~-~v~~~~~~~~l~s~~~d~~v~~w-~~~~ 78 (281)
+|..+-..|||+.+..-+. ..+.+++..+.+.+.-+-.+...+ .|. .+..-..|.-++.+..||-|.-| |...
T Consensus 222 ~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~ 300 (733)
T COG4590 222 DVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRR 300 (733)
T ss_pred chHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeec
Confidence 4556678999996543332 567777755433221111111111 111 11112244557778888888777 4443
Q ss_pred CCee--EEeEeecCCccceeEEEecCC--CCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC
Q 023500 79 GNEF--ECVSVLQGHAQDVKMVQWHPT--MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK 154 (281)
Q Consensus 79 ~~~~--~~~~~~~~~~~~v~~v~~~p~--~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 154 (281)
+... ..++.++--...+..+ -|+ .+.+++-+..|++.++.-.... .. +.+. --..+.-+++||.
T Consensus 301 ~~~p~l~h~R~f~l~pa~~~~l--~pe~~rkgF~~l~~~G~L~~f~st~~~------~l-L~~~---~~~~~~~~~~Sp~ 368 (733)
T COG4590 301 DGQPHLNHIRNFKLAPAEVQFL--LPETNRKGFYSLYRNGTLQSFYSTSEK------LL-LFER---AYQAPQLVAMSPN 368 (733)
T ss_pred CCCCcceeeeccccCcccceee--ccccccceEEEEcCCCceeeeecccCc------ce-ehhh---hhcCcceeeeCcc
Confidence 3321 1111111111112221 222 2346666777777766332211 00 1110 1123456899999
Q ss_pred CCEEEEeeCCCcEEEEeCCc
Q 023500 155 GDKLVSCSDDLTIKIWGADI 174 (281)
Q Consensus 155 ~~~l~s~~~d~~i~~w~~~~ 174 (281)
+.+|++-. .|.++++..+.
T Consensus 369 ~~~Ll~e~-~gki~~~~l~N 387 (733)
T COG4590 369 QAYLLSED-QGKIRLAQLEN 387 (733)
T ss_pred cchheeec-CCceEEEEecC
Confidence 98888754 56799886653
No 458
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=59.04 E-value=87 Score=24.68 Aligned_cols=45 Identities=11% Similarity=0.142 Sum_probs=35.1
Q ss_pred EEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEc
Q 023500 10 AWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN 56 (281)
Q Consensus 10 ~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~ 56 (281)
++..+|.+.++.-+.+.+.-.|+.+++. +.+++-.+..|+|++|-
T Consensus 218 ~ID~eG~L~Va~~ng~~V~~~dp~tGK~--L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 218 TIDTEGNLYVATFNGGTVQKVDPTTGKI--LLEIKLPTPQITSCCFG 262 (310)
T ss_pred eEccCCcEEEEEecCcEEEEECCCCCcE--EEEEEcCCCceEEEEec
Confidence 4466788888888888998889988864 55666568899999994
No 459
>PRK10115 protease 2; Provisional
Probab=58.69 E-value=1.6e+02 Score=27.51 Aligned_cols=112 Identities=13% Similarity=0.125 Sum_probs=56.0
Q ss_pred eeEEEEcCCCCEEEEee-CCC----cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC------CcEEEE
Q 023500 6 VRSCAWSPSGKLLATAS-FDA----TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD------KSVWIW 74 (281)
Q Consensus 6 i~~~~~~~~~~~l~tg~-~d~----~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d------~~v~~w 74 (281)
+..+.++|||++||-+- .+| .|.+-|..++.. ....+. ..-..++|.+|++.|+-...+ ..|+.+
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~-l~~~i~---~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNW-YPELLD---NVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCC-CCcccc---CcceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 55678999999887653 223 366667665531 111222 111468999998765443322 355666
Q ss_pred EecCCCeeEEeEeecCCccceeEEEecC-CCCeEEEEe---cCCeEEEEeCC
Q 023500 75 EVMPGNEFECVSVLQGHAQDVKMVQWHP-TMDVLFSCS---YDNTIKVWWAE 122 (281)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~l~s~s---~d~~v~~w~~~ 122 (281)
++.++.+. ....+...........+.+ ++.+++..+ .++.+.+++..
T Consensus 205 ~lgt~~~~-d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 205 TIGTPASQ-DELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred ECCCChhH-CeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 66544211 1122222222222223333 666544333 23467777643
No 460
>PLN02153 epithiospecifier protein
Probab=58.01 E-value=1.1e+02 Score=25.42 Aligned_cols=28 Identities=7% Similarity=0.125 Sum_probs=18.1
Q ss_pred CCCEEEEeeCC-----------CcEEEEecCCCceeeee
Q 023500 14 SGKLLATASFD-----------ATTCIWEDVGGDYECVA 41 (281)
Q Consensus 14 ~~~~l~tg~~d-----------~~i~lw~~~~~~~~~~~ 41 (281)
++++++.|+.+ ..+.+||..+..+..+.
T Consensus 137 ~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~ 175 (341)
T PLN02153 137 ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLP 175 (341)
T ss_pred CCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCC
Confidence 56777787754 24667888777665443
No 461
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=56.28 E-value=59 Score=23.05 Aligned_cols=51 Identities=12% Similarity=0.089 Sum_probs=24.0
Q ss_pred eeEEEEcCCCCEEE-EeeCCCcEEEEecCCCc--eeeeeeecCCCCCeeEEEEcC
Q 023500 6 VRSCAWSPSGKLLA-TASFDATTCIWEDVGGD--YECVATLEGHENEVKSVSWNA 57 (281)
Q Consensus 6 i~~~~~~~~~~~l~-tg~~d~~i~lw~~~~~~--~~~~~~~~~h~~~v~~v~~~~ 57 (281)
+..--|.+|.++|. +|=.|++|+.|+....+ ...+..+. +......++|-|
T Consensus 13 ~L~P~yD~dt~llyl~gKGD~~ir~yEv~~~~p~l~~l~~~~-s~~~~~G~~~lP 66 (136)
T PF08954_consen 13 VLMPFYDEDTNLLYLAGKGDGNIRYYEVSDESPYLHYLSEYR-SPEPQKGFAFLP 66 (136)
T ss_dssp -EEEEE-TTT-EEEEEETT-S-EEEEEE-SSTTSEEEEEEE---SS--SEEEE--
T ss_pred eeEeeEcCCCCEEEEEeccCcEEEEEEEcCCCCceEEccccc-cCCCeEeeEecC
Confidence 34445777777654 55577899999886552 33333333 345667777766
No 462
>PRK13684 Ycf48-like protein; Provisional
Probab=56.22 E-value=1.2e+02 Score=25.28 Aligned_cols=232 Identities=14% Similarity=0.192 Sum_probs=100.1
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeee-ecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecC-CCe
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVAT-LEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP-GNE 81 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~-~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~-~~~ 81 (281)
..++++.|....+-+|.|. ++.|..=......+..... +......+.++.|.++ ..++. +..+.| +.... ++.
T Consensus 46 ~~l~~v~F~d~~~g~avG~-~G~il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i--~~S~DgG~t 120 (334)
T PRK13684 46 ANLLDIAFTDPNHGWLVGS-NRTLLETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLL--LHTTDGGKN 120 (334)
T ss_pred CceEEEEEeCCCcEEEEEC-CCEEEEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceE--EEECCCCCC
Confidence 4677888986666676664 4543221112223322111 1112334778888653 33333 444443 33333 233
Q ss_pred eEEeEe---ecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEE
Q 023500 82 FECVSV---LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158 (281)
Q Consensus 82 ~~~~~~---~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 158 (281)
++.+.. +.++. .......++ .+..++..+.|..= .+ .-..|+.+.. .-...+..+.+.|++.++
T Consensus 121 W~~~~~~~~~~~~~--~~i~~~~~~--~~~~~g~~G~i~~S--~D-gG~tW~~~~~------~~~g~~~~i~~~~~g~~v 187 (334)
T PRK13684 121 WTRIPLSEKLPGSP--YLITALGPG--TAEMATNVGAIYRT--TD-GGKNWEALVE------DAAGVVRNLRRSPDGKYV 187 (334)
T ss_pred CeEccCCcCCCCCc--eEEEEECCC--cceeeeccceEEEE--CC-CCCCceeCcC------CCcceEEEEEECCCCeEE
Confidence 433221 11121 111222222 22333445544321 11 1123432221 113457888999988766
Q ss_pred EEeeCCCcEE-EEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccce
Q 023500 159 VSCSDDLTIK-IWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYK 237 (281)
Q Consensus 159 ~s~~~d~~i~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 237 (281)
+++. .|.+. .++- +-.+|.... ......+..+.+.+++.++..+..+.+++-....+ ....
T Consensus 188 ~~g~-~G~i~~s~~~---------gg~tW~~~~---~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G-----~sW~ 249 (334)
T PRK13684 188 AVSS-RGNFYSTWEP---------GQTAWTPHQ---RNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDL-----ESWS 249 (334)
T ss_pred EEeC-CceEEEEcCC---------CCCeEEEee---CCCcccceeeeEcCCCCEEEEecCCEEEEccCCCC-----Cccc
Confidence 6554 44332 2211 111232221 12345667777777775555566666543211111 1111
Q ss_pred eeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEE
Q 023500 238 MLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIK 273 (281)
Q Consensus 238 ~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~ 273 (281)
........-...+.++.+.|++. +++ ++.+|.+.
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~-~~~-~G~~G~v~ 283 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGE-IWA-GGGNGTLL 283 (334)
T ss_pred cccCCccccccceeeEEEcCCCC-EEE-EcCCCeEE
Confidence 11000011123467788888654 444 44566543
No 463
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=54.48 E-value=25 Score=16.99 Aligned_cols=26 Identities=15% Similarity=0.397 Sum_probs=18.3
Q ss_pred CCeeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 248 MDVNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 248 ~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
+.|.+++..+ ..++.+..-+.||||.
T Consensus 2 E~i~aia~g~---~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGD---SWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccC---CEEEEEeCCCeEEecC
Confidence 3577787765 2566777778999973
No 464
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=53.54 E-value=32 Score=18.05 Aligned_cols=22 Identities=14% Similarity=0.117 Sum_probs=18.0
Q ss_pred cceeEEEEcCCCCEEEEeeCCC
Q 023500 4 RTVRSCAWSPSGKLLATASFDA 25 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~ 25 (281)
.....+++.++|.+.++|..++
T Consensus 13 ~~~~~IavD~~GNiYv~G~T~~ 34 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVTGYTNG 34 (38)
T ss_pred eeEEEEEECCCCCEEEEEeecC
Confidence 3477899999999999987665
No 465
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=52.39 E-value=36 Score=18.27 Aligned_cols=28 Identities=11% Similarity=0.326 Sum_probs=18.5
Q ss_pred CCCCEEEEeeCCC------cEEEEecCCCceeee
Q 023500 13 PSGKLLATASFDA------TTCIWEDVGGDYECV 40 (281)
Q Consensus 13 ~~~~~l~tg~~d~------~i~lw~~~~~~~~~~ 40 (281)
-++++++.||.++ .+..||..++.+..+
T Consensus 10 ~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 43 (47)
T PF01344_consen 10 VGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEEL 43 (47)
T ss_dssp ETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEE
T ss_pred ECCEEEEEeeecccCceeeeEEEEeCCCCEEEEc
Confidence 3677888888776 356677766665443
No 466
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=52.03 E-value=1.1e+02 Score=24.99 Aligned_cols=69 Identities=17% Similarity=0.332 Sum_probs=43.1
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCC-Ce--e--EEEEcCCCCEEEEecCCCcEEEEEe
Q 023500 6 VRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHEN-EV--K--SVSWNASGTLLATCGRDKSVWIWEV 76 (281)
Q Consensus 6 i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~-~v--~--~v~~~~~~~~l~s~~~d~~v~~w~~ 76 (281)
|+++...++|.+|++.-.-..|.+.+..+++. +-.+.|... .. . ..++-.+-+++-.+..+++|.++|=
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I--~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKI--IWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcE--EEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 66778888999999988778888777766653 334444311 10 1 1233234445555567788888874
No 467
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=51.83 E-value=1.1e+02 Score=23.66 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=18.0
Q ss_pred cCCCCCeeEEEEcCCCCeeEEEeC
Q 023500 244 KAHDMDVNSVQWSPGERRLLASAS 267 (281)
Q Consensus 244 ~~h~~~v~~~~~~~~~~~~~~s~~ 267 (281)
..|..-.+.+++.|++.+++++|-
T Consensus 225 ~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 225 KSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred ccccccccceeecCcCCeEEEecC
Confidence 345556789999998877888874
No 468
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=51.73 E-value=1.7e+02 Score=25.85 Aligned_cols=141 Identities=8% Similarity=0.128 Sum_probs=0.0
Q ss_pred EEcCCCCEEEEeeCCC------------------cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCC-----------
Q 023500 10 AWSPSGKLLATASFDA------------------TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT----------- 60 (281)
Q Consensus 10 ~~~~~~~~l~tg~~d~------------------~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~----------- 60 (281)
++.+.+.++..++.++ .+.-.|..+++.........|........-.|.-.
T Consensus 223 a~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~ 302 (488)
T cd00216 223 TYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVP 302 (488)
T ss_pred eEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeE
Q ss_pred EEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEe------------------cCCeEEEEeCC
Q 023500 61 LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS------------------YDNTIKVWWAE 122 (281)
Q Consensus 61 ~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s------------------~d~~v~~w~~~ 122 (281)
.++.++.++.+...|..+++........ ...+...| ..++.++ .++.+.-.|..
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~------~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~ 374 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEV------EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPK 374 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEee------ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCC
Q ss_pred CCCCCCceeeeeeeeccCCccccEEEEEEc------------------cCCCEEEEeeCCCcEEEEeCCcccc
Q 023500 123 DTDSDNWHCVQTISESNNGHSSTIWALSFN------------------AKGDKLVSCSDDLTIKIWGADITRM 177 (281)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~------------------~~~~~l~s~~~d~~i~~w~~~~~~~ 177 (281)
+. ..++..... ..+..++.++.||.+..+|.+.++.
T Consensus 375 tG-------------------~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~ 428 (488)
T cd00216 375 TG-------------------KVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKE 428 (488)
T ss_pred CC-------------------cEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCce
No 469
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=51.62 E-value=1.3e+02 Score=24.41 Aligned_cols=54 Identities=11% Similarity=0.319 Sum_probs=37.1
Q ss_pred CCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEec------CCCcEEEEEecC
Q 023500 23 FDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCG------RDKSVWIWEVMP 78 (281)
Q Consensus 23 ~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~------~d~~v~~w~~~~ 78 (281)
....|++||..+.++.... .+-.+.|..+.|..+...++.|. ....+..||+..
T Consensus 14 ~C~~lC~yd~~~~qW~~~g--~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~ 73 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPG--NGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKN 73 (281)
T ss_pred CCCEEEEEECCCCEeecCC--CCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCC
Confidence 3567999998877664333 23568899999986666666654 345677788754
No 470
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=49.66 E-value=1.6e+02 Score=24.90 Aligned_cols=41 Identities=7% Similarity=0.025 Sum_probs=20.8
Q ss_pred cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecC
Q 023500 26 TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR 67 (281)
Q Consensus 26 ~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~ 67 (281)
.+.+||..++.+..+..+......-.++... +++..+.||.
T Consensus 190 ~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~-~~~iYv~GG~ 230 (376)
T PRK14131 190 EVLSYDPSTNQWKNAGESPFLGTAGSAVVIK-GNKLWLINGE 230 (376)
T ss_pred eEEEEECCCCeeeECCcCCCCCCCcceEEEE-CCEEEEEeee
Confidence 4788898887765444332111112233322 4556666653
No 471
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=49.47 E-value=51 Score=19.11 Aligned_cols=19 Identities=16% Similarity=0.176 Sum_probs=14.9
Q ss_pred CeeEEEEcCCCCEEEEecC
Q 023500 49 EVKSVSWNASGTLLATCGR 67 (281)
Q Consensus 49 ~v~~v~~~~~~~~l~s~~~ 67 (281)
.+++++.-|||+.|++|..
T Consensus 2 ~~~~~~~q~DGkIlv~G~~ 20 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGYV 20 (55)
T ss_pred ceEEEEECCCCcEEEEEEe
Confidence 3567888899999998853
No 472
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=48.89 E-value=72 Score=20.66 Aligned_cols=55 Identities=9% Similarity=0.064 Sum_probs=28.4
Q ss_pred EEEEcCC-CCEEEEee-----------------CCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEe
Q 023500 8 SCAWSPS-GKLLATAS-----------------FDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATC 65 (281)
Q Consensus 8 ~~~~~~~-~~~l~tg~-----------------~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~ 65 (281)
.+++.++ |.+..|-+ .+|-+.-||+.+++...+.. + -.--+.|+++||+.+++.+
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~--~-L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLD--G-LYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEE--E-ESSEEEEEE-TTSSEEEEE
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehh--C-CCccCeEEEcCCCCEEEEE
Confidence 4666776 66555543 33446667777765432221 1 1234678899998876654
No 473
>cd03444 Thioesterase_II_repeat1 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=48.69 E-value=72 Score=21.17 Aligned_cols=58 Identities=17% Similarity=0.176 Sum_probs=32.2
Q ss_pred EEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCc
Q 023500 107 LFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLT 166 (281)
Q Consensus 107 l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~ 166 (281)
...+|-|.+|.+.+.... ..|...........+.+.....--|+++|+.++++..++.
T Consensus 46 ~~~aSldhsi~Fh~~~~~--~~W~l~~~~~~~~~~gr~~~~~~l~~~~G~LvAs~~Q~~l 103 (104)
T cd03444 46 SASASLDHAIWFHRPFRA--DDWLLYEQRSPRAGNGRGLVEGRIFTRDGELVASVAQEGL 103 (104)
T ss_pred cceEeeeEEEEEeCCCCC--CceEEEEEECccccCCeeEEEEEEECCCCCEEEEEEEeee
Confidence 455667777776643322 2332222211111223445566778899999999887653
No 474
>PF13964 Kelch_6: Kelch motif
Probab=46.69 E-value=29 Score=19.15 Aligned_cols=28 Identities=14% Similarity=0.296 Sum_probs=18.2
Q ss_pred CCCCEEEEeeCCC------cEEEEecCCCceeee
Q 023500 13 PSGKLLATASFDA------TTCIWEDVGGDYECV 40 (281)
Q Consensus 13 ~~~~~l~tg~~d~------~i~lw~~~~~~~~~~ 40 (281)
-++++++.|+.++ .+.+||..+++++.+
T Consensus 10 ~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 43 (50)
T PF13964_consen 10 VGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQL 43 (50)
T ss_pred ECCEEEEECCCCCCCCccccEEEEcCCCCcEEEC
Confidence 3677778887665 456677776665543
No 475
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=45.21 E-value=1.8e+02 Score=24.15 Aligned_cols=53 Identities=13% Similarity=0.178 Sum_probs=28.9
Q ss_pred CCCEEEEeeCC-----------CcEEEEecCCCceeeeeeecCCCCCeeEE-EE-cCCCCEEEEecCC
Q 023500 14 SGKLLATASFD-----------ATTCIWEDVGGDYECVATLEGHENEVKSV-SW-NASGTLLATCGRD 68 (281)
Q Consensus 14 ~~~~l~tg~~d-----------~~i~lw~~~~~~~~~~~~~~~h~~~v~~v-~~-~~~~~~l~s~~~d 68 (281)
++++.+.|+.+ ..+..||+.++.+..+... ........ .. .-+++..+.||.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~--~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTR--SPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCC--CCCcccceeEEEEeCCEEEEEcCcC
Confidence 57788888753 2366778877766544321 11111111 11 2467777777764
No 476
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=44.19 E-value=3.4e+02 Score=27.12 Aligned_cols=145 Identities=14% Similarity=0.253 Sum_probs=74.6
Q ss_pred CEEEEee-----CC----CcEEEEecCC-----C------ceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEE
Q 023500 16 KLLATAS-----FD----ATTCIWEDVG-----G------DYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWE 75 (281)
Q Consensus 16 ~~l~tg~-----~d----~~i~lw~~~~-----~------~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~ 75 (281)
.+||.|. +| |.+.|+|... + +.+.+ ..+.-+++|..++ .-+|.++.+-| ..|.+|+
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel-~~eE~KGtVsavc-eV~G~l~~~~G--qKI~v~~ 1122 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKEL-YIEEQKGTVSAVC-EVRGHLLSSQG--QKIIVRK 1122 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeee-ehhhcccceEEEE-EeccEEEEccC--cEEEEEE
Confidence 3677663 44 6688888432 1 11111 1234567776654 22454444433 5799999
Q ss_pred ecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCC
Q 023500 76 VMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG 155 (281)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 155 (281)
+..+...-.+.-+.. .+......--.++|+.|.--..|.+..+.... .+ ...+.. ..-+-.+.++.|--+|
T Consensus 1123 l~r~~~ligVaFiD~---~~yv~s~~~vknlIl~gDV~ksisfl~fqeep---~r-lsL~sr--d~~~l~v~s~EFLVdg 1193 (1366)
T KOG1896|consen 1123 LDRDSELIGVAFIDL---PLYVHSMKVVKNLILAGDVMKSISFLGFQEEP---YR-LSLLSR--DFEPLNVYSTEFLVDG 1193 (1366)
T ss_pred eccCCcceeeEEecc---ceeEEehhhhhhheehhhhhhceEEEEEccCc---eE-EEEeec--CCchhhceeeeeEEcC
Confidence 965543322222211 12222222234556665544555554333221 11 111111 1223457888887766
Q ss_pred C--EEEEeeCCCcEEEEeCC
Q 023500 156 D--KLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 156 ~--~l~s~~~d~~i~~w~~~ 173 (281)
. .++.++.|+.|.+|-..
T Consensus 1194 ~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1194 SNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred CeeEEEEEcCCCcEEEEEeC
Confidence 4 68889999999998544
No 477
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=43.97 E-value=1.8e+02 Score=23.86 Aligned_cols=64 Identities=11% Similarity=0.151 Sum_probs=35.0
Q ss_pred CCCEEEEeeCC-----CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCc----EEEEEecC
Q 023500 14 SGKLLATASFD-----ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKS----VWIWEVMP 78 (281)
Q Consensus 14 ~~~~l~tg~~d-----~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~----v~~w~~~~ 78 (281)
++++++.|+.. ..+..||+.+.++..+..+..... ........+++..+.||.++. +..+|...
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r-~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPR-VQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCC-CcceEEEECCEEEEEcCCCCccccceEEEecCC
Confidence 46677777742 357778887777665543322111 111222335667777776542 44666643
No 478
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=42.79 E-value=2.2e+02 Score=24.51 Aligned_cols=30 Identities=17% Similarity=0.328 Sum_probs=24.4
Q ss_pred cEEEEEEccCCCEEEEeeCCCcEEEEeCCc
Q 023500 145 TIWALSFNAKGDKLVSCSDDLTIKIWGADI 174 (281)
Q Consensus 145 ~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~ 174 (281)
.+.++...+....|++-..+|.|++|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 388889988889999999999999998853
No 479
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=42.41 E-value=1.9e+02 Score=23.74 Aligned_cols=142 Identities=12% Similarity=0.052 Sum_probs=77.6
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeE
Q 023500 7 RSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVS 86 (281)
Q Consensus 7 ~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~ 86 (281)
..+.++ +++...+.++.-++|.|..+.+......+-.-.+-..++.. .|++...+..|.-..+.|+......+...
T Consensus 90 ~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~lag 165 (370)
T COG5276 90 ADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAG 165 (370)
T ss_pred heeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeee
Confidence 344454 44555667778899999876543222222212243445444 57888777756667778987665444333
Q ss_pred eecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 87 VLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 87 ~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
.+.........+.. .+++...+..|+-+.+-|+....+... +.... ....+.++..+++..+++..
T Consensus 166 rya~~~~d~~~v~I--SGn~AYvA~~d~GL~ivDVSnp~sPvl--i~~~n-----~g~g~~sv~vsdnr~y~vvy 231 (370)
T COG5276 166 RYALPGGDTHDVAI--SGNYAYVAWRDGGLTIVDVSNPHSPVL--IGSYN-----TGPGTYSVSVSDNRAYLVVY 231 (370)
T ss_pred eeccCCCCceeEEE--ecCeEEEEEeCCCeEEEEccCCCCCeE--EEEEe-----cCCceEEEEecCCeeEEEEc
Confidence 33322222223333 356777778999999999876543211 11111 11245666666665554443
No 480
>KOG3611 consensus Semaphorins [Signal transduction mechanisms]
Probab=42.26 E-value=3e+02 Score=25.97 Aligned_cols=76 Identities=13% Similarity=0.113 Sum_probs=46.2
Q ss_pred ccceeEEEec----CCCC--eEEEEecCCeE-EEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCC
Q 023500 92 AQDVKMVQWH----PTMD--VLFSCSYDNTI-KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDD 164 (281)
Q Consensus 92 ~~~v~~v~~~----p~~~--~l~s~s~d~~v-~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 164 (281)
....+.|... ++++ .++.|+++|+| |+-.+..........+.+++.. .+..+|..|.+++....|+.|+.+
T Consensus 407 ~~~~t~I~Vd~~~~~~~~ydVlflGTd~G~vlKvV~~~~~~~~~~~llEElqvf--~~~~pI~~m~Ls~~~~~LyVgs~~ 484 (737)
T KOG3611|consen 407 DYRLTQIVVDRVAGLDGNYDVLFLGTDAGTVLKVVSPGKESGKSNVLLEELQVF--PDAEPIRSMQLSSKRGSLYVGSRS 484 (737)
T ss_pred cceEEEEEEEEecCCCCcEEEEEEecCCCeEEEEEecCCccCccceeEEEEeec--CCCCceeEEEecccCCeEEEEccC
Confidence 3444555544 3333 57889999977 5554443211111123333322 344779999999988889999999
Q ss_pred CcEEE
Q 023500 165 LTIKI 169 (281)
Q Consensus 165 ~~i~~ 169 (281)
|-+++
T Consensus 485 gV~qv 489 (737)
T KOG3611|consen 485 GVVQV 489 (737)
T ss_pred cEEEe
Confidence 87665
No 481
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=41.60 E-value=1.3e+02 Score=21.37 Aligned_cols=108 Identities=11% Similarity=0.062 Sum_probs=59.9
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEecCCCc------eeeeeeecCCCCCeeEEE---EcCC--CCEEEEecCCCcEEEEEe
Q 023500 8 SCAWSPSGKLLATASFDATTCIWEDVGGD------YECVATLEGHENEVKSVS---WNAS--GTLLATCGRDKSVWIWEV 76 (281)
Q Consensus 8 ~~~~~~~~~~l~tg~~d~~i~lw~~~~~~------~~~~~~~~~h~~~v~~v~---~~~~--~~~l~s~~~d~~v~~w~~ 76 (281)
.-.|.....-|+.+...++|.|+++.... ...+..++ -...|++++ |.|+ ...|+.|+. .++..+|+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEc
Confidence 34566666678888888999999865331 12233443 456677774 4443 345666665 67899998
Q ss_pred cCCCeeEEeEeecCCccceeEEEec---CCCCeEEEEecCCeEEEEeC
Q 023500 77 MPGNEFECVSVLQGHAQDVKMVQWH---PTMDVLFSCSYDNTIKVWWA 121 (281)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~v~~v~~~---p~~~~l~s~s~d~~v~~w~~ 121 (281)
......- ++.-.+.|+++.+- ....-++..+.+..|.-+|.
T Consensus 81 ~~N~d~F----yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~ 124 (136)
T PF14781_consen 81 ENNSDLF----YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDY 124 (136)
T ss_pred ccCchhh----hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCC
Confidence 6543210 12223445655442 22223444444566665543
No 482
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=41.59 E-value=6.3 Score=18.20 Aligned_cols=7 Identities=57% Similarity=1.293 Sum_probs=5.6
Q ss_pred EcCCCCE
Q 023500 11 WSPSGKL 17 (281)
Q Consensus 11 ~~~~~~~ 17 (281)
|||+|++
T Consensus 8 FSp~Grl 14 (23)
T PF10584_consen 8 FSPDGRL 14 (23)
T ss_dssp BBTTSSB
T ss_pred ECCCCeE
Confidence 7888875
No 483
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=41.12 E-value=1.1e+02 Score=24.41 Aligned_cols=59 Identities=19% Similarity=0.241 Sum_probs=37.0
Q ss_pred EEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcE
Q 023500 107 LFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTI 167 (281)
Q Consensus 107 l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i 167 (281)
...+|-|-+|.+... .....|..............+.+..--|+.+|.++++...++.+
T Consensus 212 ~~~aSldhtv~fh~~--~~~~~W~l~~~~s~~~~~Grg~~~~~l~d~~G~lvAs~~Qe~l~ 270 (271)
T TIGR00189 212 SMAASLDHSIWFHRP--FRADDWLLYKCSSPSASGSRGLVEGKIFTRDGVLIASTVQEGLV 270 (271)
T ss_pred cEEEeeeeeEEEeCC--CCCCeeEEEEEEeccccCCceEEEEEEECCCCCEEEEEEeeeec
Confidence 445688888888753 23344544333222222335556677788999999999988765
No 484
>PRK13615 lipoprotein LpqB; Provisional
Probab=40.33 E-value=2.9e+02 Score=25.11 Aligned_cols=147 Identities=10% Similarity=-0.081 Sum_probs=72.8
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeE
Q 023500 7 RSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVS 86 (281)
Q Consensus 7 ~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~ 86 (281)
...+.+++++.+|....++.+.++...... .. .+.+ ..+..=+|.++| .+=+.-++...++.......+...+.
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~~~~-~~--~~~~--~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~v~ 410 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGDRDA-VL--LDTR--PGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHPVA 410 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCCCcc-ee--eccC--CccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEEee
Confidence 567899999988877777766666333111 11 1121 223333455554 33333222233333332211111111
Q ss_pred eecCCccceeEEEecCCCCeEEEEe---cCCeEEEEeCCCCCCCCceee-eeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 87 VLQGHAQDVKMVQWHPTMDVLFSCS---YDNTIKVWWAEDTDSDNWHCV-QTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 87 ~~~~~~~~v~~v~~~p~~~~l~s~s---~d~~v~~w~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
.--.-...|..+..+++|-.++.-. ..++|.+=-+.+....+. .+ ........+. ..+.++.|..++++.+.+
T Consensus 411 v~~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~-~L~~~p~~l~~~l-~~v~sl~W~~~~~laVl~ 487 (557)
T PRK13615 411 VSWTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPT-SLTTTPLELLASP-GTPLDATWVDELDVATLT 487 (557)
T ss_pred ccccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcce-EeeeccEEcccCc-CcceeeEEcCCCEEEEEe
Confidence 1111235699999999998654432 345677655555211111 12 1111111122 367899999888765554
No 485
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=37.70 E-value=1.7e+02 Score=23.76 Aligned_cols=61 Identities=10% Similarity=0.118 Sum_probs=39.0
Q ss_pred EEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEE
Q 023500 107 LFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKI 169 (281)
Q Consensus 107 l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~ 169 (281)
+..+|-|.+|.+.+.. +.+.|...........+.++.+..--|+.+|.+++++..+|.++.
T Consensus 224 ~~~aSLdhsi~Fh~~~--~~d~W~L~~~~s~~a~~gr~~~~g~i~~~~G~LvAs~~Qegl~r~ 284 (286)
T PRK10526 224 MQIATIDHSMWFHRPF--NLNEWLLYSVESTSASSARGFVRGEFYTQDGVLVASTVQEGVMRN 284 (286)
T ss_pred ceEEeeeEeEEEeCCC--CCCceEEEEEECCcccCCceEEEEEEECCCCCEEEEEEeeEEEEe
Confidence 4566888888776532 234453332222222233455666678899999999999998875
No 486
>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=36.82 E-value=33 Score=28.79 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.0
Q ss_pred CCCEEEEecCCCcEEEEEecCC
Q 023500 58 SGTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 58 ~~~~l~s~~~d~~v~~w~~~~~ 79 (281)
.|-.|+|||.|+++.+||+++.
T Consensus 340 ~Gy~lvtgGTDnHlvLvDLr~~ 361 (477)
T KOG2467|consen 340 RGYKLVTGGTDNHLVLVDLRPK 361 (477)
T ss_pred cCceEecCCccceEEEEecccc
Confidence 4668999999999999999754
No 487
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=36.77 E-value=75 Score=17.39 Aligned_cols=29 Identities=14% Similarity=0.330 Sum_probs=17.9
Q ss_pred EEcCCCCEEEEeeC--C------CcEEEEecCCCcee
Q 023500 10 AWSPSGKLLATASF--D------ATTCIWEDVGGDYE 38 (281)
Q Consensus 10 ~~~~~~~~l~tg~~--d------~~i~lw~~~~~~~~ 38 (281)
+..+++++++.|+. + ..+.+||..+.++.
T Consensus 7 ~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~ 43 (49)
T PF07646_consen 7 AVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWT 43 (49)
T ss_pred EEEECCEEEEECCcccCCCCcccceeEEEECCCCEEe
Confidence 34568888888887 2 13556666555543
No 488
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=35.11 E-value=3.1e+02 Score=23.93 Aligned_cols=93 Identities=14% Similarity=0.164 Sum_probs=57.3
Q ss_pred cEEEEecCCCceeeeeeecC--CCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCC
Q 023500 26 TTCIWEDVGGDYECVATLEG--HENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT 103 (281)
Q Consensus 26 ~i~lw~~~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~ 103 (281)
.+.|.|.+.+ .+..++| ..+.|.++.|-.|-.+|+|--+-.-+.+-|+.+.+....+..++-. -.+--.||-
T Consensus 407 ~vYilDe~ln---vvGkltGl~~gERIYAvRf~gdv~yiVTfrqtDPlfviDlsNPenPkvlGeLKIP---GfS~YLHpi 480 (603)
T COG4880 407 AVYILDENLN---VVGKLTGLAPGERIYAVRFVGDVLYIVTFRQTDPLFVIDLSNPENPKVLGELKIP---GFSEYLHPI 480 (603)
T ss_pred eeEEEcCCCc---EEEEEeccCCCceEEEEEEeCceEEEEEEeccCceEEEEcCCCCCCceeEEEecC---Cchhhcccc
Confidence 4555554332 2334443 5578999999888889999988888999999876654443333211 011124554
Q ss_pred C--CeEEEEecCCeEE--EEeCCCC
Q 023500 104 M--DVLFSCSYDNTIK--VWWAEDT 124 (281)
Q Consensus 104 ~--~~l~s~s~d~~v~--~w~~~~~ 124 (281)
+ .++-.|..+|.+| ++|+.+.
T Consensus 481 gen~~lGvG~~~g~vKiSLFdiSdl 505 (603)
T COG4880 481 GENRLLGVGAYQGGVKISLFDISDL 505 (603)
T ss_pred CCCcEEEeecccCCceEEEEeccCC
Confidence 3 3566778888655 6666543
No 489
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=33.44 E-value=1.2e+02 Score=28.48 Aligned_cols=32 Identities=13% Similarity=0.310 Sum_probs=26.8
Q ss_pred CCeeEEEEcCCCCEEEEecCCCcEEEEEecCC
Q 023500 48 NEVKSVSWNASGTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 48 ~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~ 79 (281)
..+.++.-+|.|.-++++..||+|++++..+.
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r 46 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPR 46 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeeccc
Confidence 45667777899999999999999999997544
No 490
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=33.19 E-value=3.3e+02 Score=28.29 Aligned_cols=153 Identities=12% Similarity=0.162 Sum_probs=75.5
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...++.+.-+++|+.+- -.|+.+..||.....|++.-. .-+..+..+.-.-||...+ -.|.+ |-|+..+..
T Consensus 361 H~A~LTgv~~~~~ge~lR--lHd~~LY~~d~~~~~Wk~~~~--~~d~~~S~Ls~qgdG~lYA--k~~~~--l~nLSs~~~ 432 (1774)
T PF11725_consen 361 HIAHLTGVHTDPDGEQLR--LHDDRLYQFDPNTARWKPPPD--KSDTPFSSLSRQGDGKLYA--KDDDT--LVNLSSGQM 432 (1774)
T ss_pred HHHHhhccccCCCCCeEE--eecCceeeeccccceecCCCC--cccchhhhhcccCCCceEe--cCCCc--eeecCCCCc
Confidence 444556666666766663 345667777665544432100 1112333333333444444 11111 234432221
Q ss_pred eEEeEeecCCccceeEEEecCCCCe-EEEEecCCeEEEEeCCCCCCCCc-eeeeeeeeccCCccccEEEEEEccCCCEEE
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDV-LFSCSYDNTIKVWWAEDTDSDNW-HCVQTISESNNGHSSTIWALSFNAKGDKLV 159 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~-l~s~s~d~~v~~w~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 159 (281)
. ..--..+.+...+|++.. +.++...-.+.+|++....-... ++...+. ..+-.....++.++++ .|+
T Consensus 433 ~------~~~v~~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~--L~dG~a~A~~VgLs~d--rLF 502 (1774)
T PF11725_consen 433 S------EAEVDKLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQ--LADGKAQAQSVGLSND--RLF 502 (1774)
T ss_pred c------hhhhhhcccccccCCCceeeeecCCCcceeeeccCccccccCccceeeee--ccCCchhhhheeecCC--eEE
Confidence 0 011234666777888887 56666666779997765421110 1111111 1112235667788766 577
Q ss_pred EeeCCCcEEEEeC
Q 023500 160 SCSDDLTIKIWGA 172 (281)
Q Consensus 160 s~~~d~~i~~w~~ 172 (281)
....+|.+..=+.
T Consensus 503 vADseGkLYsa~l 515 (1774)
T PF11725_consen 503 VADSEGKLYSADL 515 (1774)
T ss_pred EEeCCCCEEeccc
Confidence 7888887765543
No 491
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=32.92 E-value=3e+02 Score=23.24 Aligned_cols=53 Identities=15% Similarity=0.203 Sum_probs=28.1
Q ss_pred CCCEEEEeeCCC-----------cEEEEecCCCceeeeeeecCCCCCee-EEEEc-CCCCEEEEecCC
Q 023500 14 SGKLLATASFDA-----------TTCIWEDVGGDYECVATLEGHENEVK-SVSWN-ASGTLLATCGRD 68 (281)
Q Consensus 14 ~~~~l~tg~~d~-----------~i~lw~~~~~~~~~~~~~~~h~~~v~-~v~~~-~~~~~l~s~~~d 68 (281)
++++++.|+... .+..||..++++..+..... .... ..+.. -+++..+.||.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p--~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSP--VGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCC--CcccceEEEEeeCCEEEEECCCC
Confidence 567777777542 36677877766654432111 1111 11122 466777777754
No 492
>PLN02153 epithiospecifier protein
Probab=32.59 E-value=2.9e+02 Score=22.90 Aligned_cols=64 Identities=11% Similarity=0.237 Sum_probs=34.2
Q ss_pred CCCEEEEeeCC-----CcEEEEecCCCceeeeeeecC----CCCCeeEEEEcCCCCEEEEecCC-----------CcEEE
Q 023500 14 SGKLLATASFD-----ATTCIWEDVGGDYECVATLEG----HENEVKSVSWNASGTLLATCGRD-----------KSVWI 73 (281)
Q Consensus 14 ~~~~l~tg~~d-----~~i~lw~~~~~~~~~~~~~~~----h~~~v~~v~~~~~~~~l~s~~~d-----------~~v~~ 73 (281)
++++++.|+.+ ..+..||..+.++..+..+.. ....-.+++ .-++++.+.||.+ ..+.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMA-SDENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEE-EECCEEEEECCccCCCccCCCcccceEEE
Confidence 46677788754 246778887776654443311 111111222 2355667777754 24666
Q ss_pred EEecC
Q 023500 74 WEVMP 78 (281)
Q Consensus 74 w~~~~ 78 (281)
+|...
T Consensus 164 yd~~~ 168 (341)
T PLN02153 164 YNIAD 168 (341)
T ss_pred EECCC
Confidence 77653
No 493
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=32.47 E-value=1.9e+02 Score=23.40 Aligned_cols=57 Identities=16% Similarity=0.130 Sum_probs=35.5
Q ss_pred EEEecCCCcEEEEEecCCCeeEEeEeec---CC-ccceeEEEecCCCCeEEEEecCCeEEE
Q 023500 62 LATCGRDKSVWIWEVMPGNEFECVSVLQ---GH-AQDVKMVQWHPTMDVLFSCSYDNTIKV 118 (281)
Q Consensus 62 l~s~~~d~~v~~w~~~~~~~~~~~~~~~---~~-~~~v~~v~~~p~~~~l~s~s~d~~v~~ 118 (281)
+..+|-|.+|.+.+-...+++-...... ++ ..-...=-|+++|.++++++.++-++.
T Consensus 224 ~~~aSLdhsi~Fh~~~~~d~W~L~~~~s~~a~~gr~~~~g~i~~~~G~LvAs~~Qegl~r~ 284 (286)
T PRK10526 224 MQIATIDHSMWFHRPFNLNEWLLYSVESTSASSARGFVRGEFYTQDGVLVASTVQEGVMRN 284 (286)
T ss_pred ceEEeeeEeEEEeCCCCCCceEEEEEECCcccCCceEEEEEEECCCCCEEEEEEeeEEEEe
Confidence 5567888888887743333332222221 22 223344458899999999999988875
No 494
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=31.59 E-value=2.9e+02 Score=22.56 Aligned_cols=72 Identities=7% Similarity=0.036 Sum_probs=40.2
Q ss_pred ccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEe
Q 023500 92 AQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWG 171 (281)
Q Consensus 92 ~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~ 171 (281)
....+...|.+.+++.+++...-.=++ |. .+....+... ......+.++-.|+|+.-++.-.+..|-..|
T Consensus 147 ~~nlet~vfD~~G~lWFt~q~G~yGrL-dP-------a~~~i~vfpa--PqG~gpyGi~atpdGsvwyaslagnaiarid 216 (353)
T COG4257 147 DANLETAVFDPWGNLWFTGQIGAYGRL-DP-------ARNVISVFPA--PQGGGPYGICATPDGSVWYASLAGNAIARID 216 (353)
T ss_pred CCcccceeeCCCccEEEeeccccceec-Cc-------ccCceeeecc--CCCCCCcceEECCCCcEEEEeccccceEEcc
Confidence 456778888898888888663211111 11 1111111111 1113345678889998888777777777666
Q ss_pred CC
Q 023500 172 AD 173 (281)
Q Consensus 172 ~~ 173 (281)
..
T Consensus 217 p~ 218 (353)
T COG4257 217 PF 218 (353)
T ss_pred cc
Confidence 53
No 495
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=31.26 E-value=3e+02 Score=22.74 Aligned_cols=99 Identities=12% Similarity=0.073 Sum_probs=0.0
Q ss_pred EEEcCCCCEEEEeeCC------CcEEEEecCCCceeeee-------------eecCCCCCeeEEEEcCCCCEEEEecCCC
Q 023500 9 CAWSPSGKLLATASFD------ATTCIWEDVGGDYECVA-------------TLEGHENEVKSVSWNASGTLLATCGRDK 69 (281)
Q Consensus 9 ~~~~~~~~~l~tg~~d------~~i~lw~~~~~~~~~~~-------------~~~~h~~~v~~v~~~~~~~~l~s~~~d~ 69 (281)
+++.++|.++++--.+ ..|..++.. +...... .-...+....+++++|+|+.|+++-+..
T Consensus 90 i~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~ 168 (326)
T PF13449_consen 90 IAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESP 168 (326)
T ss_pred eEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECcc
Q ss_pred --------------cEEEEEecCCC----eeEEeEeecC-----CccceeEEEecCCCCeEE
Q 023500 70 --------------SVWIWEVMPGN----EFECVSVLQG-----HAQDVKMVQWHPTMDVLF 108 (281)
Q Consensus 70 --------------~v~~w~~~~~~----~~~~~~~~~~-----~~~~v~~v~~~p~~~~l~ 108 (281)
.++++...... ..+-...+.. ....+..+.+-|++.+++
T Consensus 169 l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLv 230 (326)
T PF13449_consen 169 LKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLV 230 (326)
T ss_pred ccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEE
No 496
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=30.85 E-value=31 Score=31.21 Aligned_cols=75 Identities=13% Similarity=0.203 Sum_probs=48.1
Q ss_pred eeeecCCCCCeeEEEEcCCCCEEEEecCCC-cEEEEEecCCCe--eEEeEeecCC-----ccceeEEEecCCCCeEEEEe
Q 023500 40 VATLEGHENEVKSVSWNASGTLLATCGRDK-SVWIWEVMPGNE--FECVSVLQGH-----AQDVKMVQWHPTMDVLFSCS 111 (281)
Q Consensus 40 ~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~-~v~~w~~~~~~~--~~~~~~~~~~-----~~~v~~v~~~p~~~~l~s~s 111 (281)
...++.|..++..+.|.+.+..+++++-.| .|.++.+..... ..+...+..| ...+..++|+...+++..+|
T Consensus 308 i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t~~~~~qs~~~s~ra~t~aviqdicfs~~s~~r~~gs 387 (788)
T KOG2109|consen 308 IRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCTVNVSDQSLVVSPRANTAAVIQDICFSEVSTIRTAGS 387 (788)
T ss_pred hhheeeecCcccccccccCceEEEEEeeccceeeeEEeccccccccccccccccchhcchHHHHHHHhhhhhcceEeecc
Confidence 456788999999999999999999888654 677776643210 0001111111 22344566777777788777
Q ss_pred cCC
Q 023500 112 YDN 114 (281)
Q Consensus 112 ~d~ 114 (281)
.+|
T Consensus 388 c~G 390 (788)
T KOG2109|consen 388 CEG 390 (788)
T ss_pred cCC
Confidence 766
No 497
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=30.18 E-value=2e+02 Score=20.36 Aligned_cols=51 Identities=14% Similarity=0.182 Sum_probs=22.9
Q ss_pred EEEEcCCCCE-EEEecCCCcEEEEEecCCCe-eEEeEeecCCccceeEEEecCC
Q 023500 52 SVSWNASGTL-LATCGRDKSVWIWEVMPGNE-FECVSVLQGHAQDVKMVQWHPT 103 (281)
Q Consensus 52 ~v~~~~~~~~-l~s~~~d~~v~~w~~~~~~~-~~~~~~~~~~~~~v~~v~~~p~ 103 (281)
---|.+|-+. .++|-.|++|+.+.+..... ......+. .......+++-|.
T Consensus 15 ~P~yD~dt~llyl~gKGD~~ir~yEv~~~~p~l~~l~~~~-s~~~~~G~~~lPK 67 (136)
T PF08954_consen 15 MPFYDEDTNLLYLAGKGDGNIRYYEVSDESPYLHYLSEYR-SPEPQKGFAFLPK 67 (136)
T ss_dssp EEEE-TTT-EEEEEETT-S-EEEEEE-SSTTSEEEEEEE---SS--SEEEE--G
T ss_pred EeeEcCCCCEEEEEeccCcEEEEEEEcCCCCceEEccccc-cCCCeEeeEecCc
Confidence 3345666555 45666799999999976632 22222222 2344556666664
No 498
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=29.86 E-value=89 Score=16.16 Aligned_cols=19 Identities=11% Similarity=0.083 Sum_probs=12.2
Q ss_pred CCEEEEeeCCCcEEEEecC
Q 023500 15 GKLLATASFDATTCIWEDV 33 (281)
Q Consensus 15 ~~~l~tg~~d~~i~lw~~~ 33 (281)
+..+..++.||.+..+|..
T Consensus 21 ~g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 21 GGRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp TSEEEEE-TTSEEEEEETT
T ss_pred CCEEEEEcCCCEEEEEeCC
Confidence 4566677778887777643
No 499
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=29.80 E-value=3.1e+02 Score=22.44 Aligned_cols=64 Identities=14% Similarity=0.141 Sum_probs=28.9
Q ss_pred CCCEEEEecCC-----CcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCe----EEEEeCCC
Q 023500 58 SGTLLATCGRD-----KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNT----IKVWWAED 123 (281)
Q Consensus 58 ~~~~l~s~~~d-----~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~----v~~w~~~~ 123 (281)
++...+.||.. ..+..+|+... ++..+..+... ..........++.+++.|+.++. +.++|++.
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~-~W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQ-EWFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCC-CeeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCC
Confidence 45666666642 35666776533 33332222111 11111112234566777776542 34565543
No 500
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=29.77 E-value=2.9e+02 Score=22.52 Aligned_cols=62 Identities=18% Similarity=0.216 Sum_probs=38.8
Q ss_pred eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEE
Q 023500 106 VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKI 169 (281)
Q Consensus 106 ~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~ 169 (281)
.+..+|-|.++.+...- +.+.|.....-.....+-++-+..=-|+.+|+++++....|.++.
T Consensus 223 ~~~~aSLDHs~wFhrp~--~~ddWlLy~~~sp~A~~~rgl~~G~lf~r~G~LiA~~~QEG~~r~ 284 (289)
T COG1946 223 GIQVASLDHSMWFHRPF--RLDDWLLYAQESPSASGGRGLVRGQLFDRDGQLIASVVQEGLIRY 284 (289)
T ss_pred cceEeeccceEEEeccc--cCCCEEEEEeeCCcccCCcceeeeEEEcCCCCEEEEEeeeEEEec
Confidence 56677889988665333 234453222222222233455666678899999999999998865
Done!