BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023501
(281 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 175 bits (443), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 100/276 (36%), Positives = 149/276 (53%), Gaps = 15/276 (5%)
Query: 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRK 73
A++L+ GN F +Y A Y AIT P V +Y+TNRALC+LK + ADCR+
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 74 AIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAK 133
A++LD SVK H+ LGQ L+ Y + I L++A +L + + +DI L AK
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN--FGDDIPSALRIAK 121
Query: 134 YLLWEQESSKR---SWELQSXXXXXXXXXXXXHVLDISRK-EGFLDEA---------SST 180
W +R EL S + + R EG D+ +
Sbjct: 122 KKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAK 181
Query: 181 HLKQMEALRQVFRKAAEDDTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDK 240
H K M + ++F + E ++PDYLC KI+ ++ R+P ITPSG+TY+R I +HL +
Sbjct: 182 HDKYMADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQR 241
Query: 241 VGKFDPITREPLRESQLVPNLAIKEAVRAYMDKHGW 276
VG F+P+TR PL + QL+PNLA+KE + A++ ++GW
Sbjct: 242 VGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGW 277
>pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of
Hsp70 Interacting Protein
Length = 179
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 75/112 (66%)
Query: 166 DISRKEGFLDEASSTHLKQMEALRQVFRKAAEDDTPAEVPDYLCCKITLDIFRDPVITPS 225
D S+ G + + S H K + + ++F + E E+PDYLC KI+ ++ R+P ITPS
Sbjct: 65 DDSQNGGDISKMKSKHDKYLMDMDELFSQVDEKRKKREIPDYLCGKISFELMREPCITPS 124
Query: 226 GVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMDKHGWA 277
G+TY+R I +HL +VG FDP+TR PL + QL+PNLA+KE + A++ ++GW
Sbjct: 125 GITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGWV 176
>pdb|2C2V|S Chain S, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|T Chain T, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|U Chain U, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|V Chain V, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 78
Score = 101 bits (251), Expect = 6e-22, Method: Composition-based stats.
Identities = 39/74 (52%), Positives = 59/74 (79%)
Query: 203 EVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLA 262
++PDYLC KI+ ++ R+P ITPSG+TY+R I +HL +VG F+P+TR PL + QL+PNLA
Sbjct: 1 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLA 60
Query: 263 IKEAVRAYMDKHGW 276
+KE + A++ ++GW
Sbjct: 61 MKEVIDAFISENGW 74
>pdb|2OXQ|C Chain C, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|D Chain D, Structure Of The Ubch5 :chip U-Box Complex
Length = 80
Score = 95.1 bits (235), Expect = 3e-20, Method: Composition-based stats.
Identities = 38/72 (52%), Positives = 56/72 (77%)
Query: 203 EVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLA 262
E+PDYLC KI+ ++ +P ITPSG+TY+R I +HL +VG FDP+TR PL + QL+PNLA
Sbjct: 9 EIPDYLCGKISFELMAEPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLA 68
Query: 263 IKEAVRAYMDKH 274
+KE + A++ ++
Sbjct: 69 MKEVIDAFIQEN 80
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 60/100 (60%)
Query: 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRK 73
A++L+ GN F +Y A Y AIT P V +Y+TNRALC+LK + ADCR+
Sbjct: 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 68
Query: 74 AIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGR 113
A++LD SVK H+ LGQ L+ Y + I L++A +L +
Sbjct: 69 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 108
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 7/123 (5%)
Query: 11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL--CP-NVPIYWTNRALCHLKRNDWTKV 67
A EQLR +GN F YG A+ AYT+A+ L P + + NRA CHLK D+ K
Sbjct: 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKA 84
Query: 68 EADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQ 127
E + KAI+ D VK Y Q L + + +L++ ++L +PK + ++ +
Sbjct: 85 ETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL----EPKNKVFQEALR 140
Query: 128 ELA 130
++
Sbjct: 141 NIS 143
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 55/103 (53%)
Query: 9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVE 68
G K+AE+L+ N YF Y AI Y++AI L P+ IY+ NR+L +L+ +
Sbjct: 8 GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYAL 67
Query: 69 ADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
D +AI+LD +KG+Y + + ++ +++ E + +
Sbjct: 68 GDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 110
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 55/103 (53%)
Query: 9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVE 68
G K+AE+L+ N YF Y AI Y++AI L P+ IY+ NR+L +L+ +
Sbjct: 1 GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYAL 60
Query: 69 ADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
D +AI+LD +KG+Y + + ++ +++ E + +
Sbjct: 61 GDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 103
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 55/103 (53%)
Query: 9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVE 68
G K+AE+L+ N YF Y AI Y++AI L P+ IY+ NR+L +L+ +
Sbjct: 16 GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYAL 75
Query: 69 ADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
D +AI+LD +KG+Y + + ++ +++ E + +
Sbjct: 76 NDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 118
>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14,
An Armadillo Repeat Containing Protein From Arabidopsis
Thaliana
Length = 78
Score = 56.2 bits (134), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 203 EVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLA 262
E P+Y C I+L++ +DPVI +G TYER+ I LD K P ++E L + L PN
Sbjct: 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYV 63
Query: 263 IKEAVRAYMDKHG 275
+K + + + +G
Sbjct: 64 LKSLIALWCESNG 76
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%)
Query: 13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCR 72
+AE+ RL+G YF+K + A+ AYTE I P ++NRA K + + ADC
Sbjct: 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 62
Query: 73 KAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKA 108
KAI+ D + V+ + + EYA ++ L+ A
Sbjct: 63 KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 98
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%)
Query: 13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCR 72
+AE+L+ +GN + + AA+ Y +AI L P +Y+ NRA + K ++ DC
Sbjct: 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCE 70
Query: 73 KAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
+AI +D K + +G L N++ + + +KAL L
Sbjct: 71 RAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL 109
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%)
Query: 13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCR 72
+AE+ RL+G YF+K + A+ AYTE I P ++NRA K + + ADC
Sbjct: 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 197
Query: 73 KAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKA 108
KAI+ D + V+ + + EYA ++ L+ A
Sbjct: 198 KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%)
Query: 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRK 73
AE + GN Y+ + Y AI+ Y +A+ L PN W N + K+ D+ K +K
Sbjct: 9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQK 68
Query: 74 AIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
A++LD ++ K Y G ++ +Y I++ +KAL L
Sbjct: 69 ALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALEL 106
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%)
Query: 21 GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
GN Y+ + Y AI+ Y +A+ L PN W R + K+ D+ K D +KA++LD +
Sbjct: 50 GNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPN 109
Query: 81 SVKGHYLLGQT 91
+ K LG
Sbjct: 110 NAKAKQNLGNA 120
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 6 GLAGVAKQAE--QLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRND 63
GL+ +QA QL+ GN++F+ + AI Y AI L PN P++++N + C++ D
Sbjct: 11 GLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGD 70
Query: 64 WTKVEADCRKAIQLDHDSVKG 84
KV KA+++ D K
Sbjct: 71 LEKVIEFTTKALEIKPDHSKA 91
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82
C-Terminal Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1
C-Terminal Fragment
Length = 537
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 6 GLAGVAKQAE--QLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRND 63
GL+ +QA QL+ GN++F+ + AI Y AI L PN P++++N + C++ D
Sbjct: 15 GLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGD 74
Query: 64 WTKVEADCRKAIQLDHDSVKG 84
KV KA+++ D K
Sbjct: 75 LEKVIEFTTKALEIKPDHSKA 95
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%)
Query: 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRK 73
A++ + GN YF K Y A+ Y EA+ P I ++NRA C K ++ + DC
Sbjct: 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDT 72
Query: 74 AIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
I+LD +KG+ L+ E++ + E AL +
Sbjct: 73 CIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV 110
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 21 GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
GN F K Y A+ YTEAI P ++NRA C+ K ++ DC + IQL+
Sbjct: 23 GNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT 82
Query: 81 SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKY 134
+KG+ L +Y + +KAL+L K D +Q A+Y
Sbjct: 83 FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKE----AADGYQRCMMAQY 132
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%)
Query: 21 GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
GN Y+ + Y AI+ Y +A+ L PN W N + K+ D+ + +KA++LD +
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 81 SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
+ + Y LG ++ +Y + I+ +KAL L
Sbjct: 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 21 GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
GN Y+ + Y AI+ Y +A+ L PN W N + K+ D+ + +KA++LD +
Sbjct: 50 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 109
Query: 81 SVKGHYLLGQT 91
+ + LG
Sbjct: 110 NAEAKQNLGNA 120
Score = 34.3 bits (77), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%)
Query: 51 WTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALN 110
W N + K+ D+ + +KA++LD ++ + Y LG ++ +Y + I+ +KAL
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 111 L 111
L
Sbjct: 72 L 72
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCR 72
++++L+ +GN ++ Y AID YT+A+++ P PIY +NRA + K D
Sbjct: 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAE 69
Query: 73 KAIQLDHDSVKGHYLLGQTLLQRNEYAD--GIKE 104
A +D K LG L R + AD G KE
Sbjct: 70 LATVVDPKYSKAWSRLG---LARFDMADYKGAKE 100
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%)
Query: 21 GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
GN Y+ + Y AI+ Y +A+ L P W N + K+ D+ + +KA++LD
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67
Query: 81 SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
S + Y LG ++ +Y + I+ +KAL L
Sbjct: 68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 98
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%)
Query: 21 GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
GN Y+ + Y AI+ Y +A+ L P W N + K+ D+ + +KA++LD
Sbjct: 42 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101
Query: 81 SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
S + Y LG ++ +Y + I+ +KAL L
Sbjct: 102 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 51 WTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALN 110
W N + K+ D+ + +KA++LD S + Y LG ++ +Y + I+ +KAL
Sbjct: 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63
Query: 111 L 111
L
Sbjct: 64 L 64
Score = 33.9 bits (76), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 21 GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD 78
GN Y+ + Y AI+ Y +A+ L P W N + K+ D+ + +KA++LD
Sbjct: 76 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%)
Query: 21 GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
GN Y+ + Y AI+ Y +A+ L PN W N + K+ D+ + +KA++L +
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN 75
Query: 81 SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
+ + Y LG ++ +Y + I+ +KAL L
Sbjct: 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 21 GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
GN Y+ + Y AI+ Y +A+ L PN W N + K+ D+ + +KA++L +
Sbjct: 50 GNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN 109
Query: 81 SVKGHYLLGQT 91
+ + LG
Sbjct: 110 NAEAKQNLGNA 120
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 32/61 (52%)
Query: 51 WTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALN 110
W N + K+ D+ + +KA++L ++ + Y LG ++ +Y + I+ +KAL
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 111 L 111
L
Sbjct: 72 L 72
>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2
Length = 305
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 4/125 (3%)
Query: 21 GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
G + Y A+D +T A+++ PN + W N + A R+A++L
Sbjct: 161 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 220
Query: 81 SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAK-PK---GYIVEDIWQELARAKYLL 136
++ Y LG + + + + ++ +ALN+ R ++ P+ G + E+IW L A +L
Sbjct: 221 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSML 280
Query: 137 WEQES 141
+ ++
Sbjct: 281 GQSDA 285
>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
pdb|1FCH|B Chain B, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
Length = 368
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Query: 30 YGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLG 89
Y A+D +T A+++ PN + W N + A R+A++L ++ Y LG
Sbjct: 233 YDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG 292
Query: 90 QTLLQRNEYADGIKELEKALNLGRGAK-PK---GYIVEDIWQELARAKYLLWEQES 141
+ + + + ++ +ALN+ R ++ P+ G + E+IW L A +L + ++
Sbjct: 293 ISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348
>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p
pdb|2J9Q|B Chain B, A Novel Conformation For The Tpr Domain Of Pex5p
Length = 328
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 4/125 (3%)
Query: 21 GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
G + Y A+D +T A+++ PN + W N + A R+A++L
Sbjct: 184 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 243
Query: 81 SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAK-PK---GYIVEDIWQELARAKYLL 136
++ Y LG + + + + ++ +ALN+ R ++ P+ G + E+IW L A +L
Sbjct: 244 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSML 303
Query: 137 WEQES 141
+ ++
Sbjct: 304 GQSDA 308
>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|D Chain D, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 328
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Query: 30 YGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLG 89
Y A+D +T A+++ PN + W N + A R+A++L ++ Y LG
Sbjct: 193 YDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG 252
Query: 90 QTLLQRNEYADGIKELEKALNLGRGAK-PK---GYIVEDIWQELARAKYLLWEQES 141
+ + + + ++ +ALN+ R ++ P+ G + E+IW L A +L + ++
Sbjct: 253 ISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 308
>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|B Chain B, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|C Chain C, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|F Chain F, Apo Form Of The Tpr Domain Of The Pex5p Receptor
Length = 319
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 4/125 (3%)
Query: 21 GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
G + Y A+D +T A+++ PN + W N + A R+A++L
Sbjct: 175 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 234
Query: 81 SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAK-PK---GYIVEDIWQELARAKYLL 136
++ Y LG + + + + ++ +ALN+ R ++ P+ G + E+IW L A +L
Sbjct: 235 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSML 294
Query: 137 WEQES 141
+ ++
Sbjct: 295 GQSDA 299
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 15/137 (10%)
Query: 11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEAD 70
KQA + + GN + K + A+ Y +A L P Y TN+A + ++ D+ K
Sbjct: 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCREL 60
Query: 71 CRKAIQLDHDS-------VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVE 123
C KAI++ ++ K + +G + + +Y D I K+L R
Sbjct: 61 CEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR--------TP 112
Query: 124 DIWQELARAKYLLWEQE 140
D+ ++ +A+ +L EQE
Sbjct: 113 DVLKKCQQAEKILKEQE 129
>pdb|2KRE|A Chain A, Solution Structure Of E4bUFD2A U-Box Domain
pdb|3L1X|A Chain A, Crystal Structure Of U-Box Domain Of Human E4b Ubiquitin
Ligase
pdb|3L1Z|B Chain B, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 100
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 202 AEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNL 261
++ PD + + DPV PSG +R++IL HL DP R+ L ES L P
Sbjct: 24 SDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEPVP 82
Query: 262 AIKEAVRAYM 271
+KE ++A+M
Sbjct: 83 ELKEQIQAWM 92
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 15/137 (10%)
Query: 11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEAD 70
KQA + + GN + K + A+ Y +A L P Y TN+A + ++ D+ K
Sbjct: 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCREL 60
Query: 71 CRKAIQLDHDS-------VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVE 123
C KAI++ ++ K + +G + + +Y D I K+L R
Sbjct: 61 CEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR--------TP 112
Query: 124 DIWQELARAKYLLWEQE 140
D+ ++ +A+ +L EQE
Sbjct: 113 DVLKKCQQAEKILKEQE 129
>pdb|2KR4|A Chain A, U-Box Domain Of The E3 Ubiquitin Ligase E4b
Length = 85
Score = 43.5 bits (101), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 202 AEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNL 261
++ PD + + DPV PSG +R++IL HL DP R+ L ES L P
Sbjct: 9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVP 67
Query: 262 AIKEAVRAYM 271
+KE ++A+M
Sbjct: 68 ELKEQIQAWM 77
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCR 72
Q E+ + GN F + Y A+ Y + IT P P+ ++N+A+ +K ++T+ C+
Sbjct: 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQ 62
Query: 73 KAIQLDHDSVKGHYLLGQTLLQRNEYADG 101
+ L + S H + L R E A G
Sbjct: 63 QG--LRYTSTAEHVAIRSKLQYRLELAQG 89
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 51 WTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALN 110
+ N A+C+LK ++TK C KA+ LD + KG Y G+ L NE+ + EK L
Sbjct: 320 FLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379
Query: 111 L 111
+
Sbjct: 380 V 380
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 51 WTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALN 110
+ N A+C+LK ++TK C KA+ LD + KG Y G+ L NE+ + EK L
Sbjct: 320 FLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379
Query: 111 L 111
+
Sbjct: 380 V 380
>pdb|1WGM|A Chain A, Solution Structure Of The U-Box In Human Ubiquitin
Conjugation Factor E4a
Length = 98
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 197 EDDTPAEVPDYLCCKITLDIFRDPVITPSG-VTYERAVILDHLDKVGKFDPITREPLRES 255
E++T A+ D I + DPV+ PS VT +R+ I HL + DP R PL
Sbjct: 12 EEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHL-LSDQTDPFNRSPLTMD 70
Query: 256 QLVPNLAIKEAVRAYM 271
Q+ PN +KE ++ ++
Sbjct: 71 QIRPNTELKEKIQRWL 86
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 46/98 (46%)
Query: 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADC 71
+Q +L+ GN S A+ Y+EAI L P+ + ++NR+ + K+ D+ K D
Sbjct: 2 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDG 61
Query: 72 RKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKAL 109
K + L D KG+ L N + + + E+ L
Sbjct: 62 CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGL 99
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 53 NRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL- 111
N A+CHLK ++ C KA++LD ++ KG + G+ L N++ + +K L L
Sbjct: 201 NLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQLY 260
Query: 112 --GRGAKPKGYIVED-IWQELARAKYL 135
+ AK + + + I ++LAR K L
Sbjct: 261 PNNKAAKTQLAVCQQRIRRQLAREKKL 287
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 30 YGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQL 77
+ AAI++ +A+ L N R HL ND+ AD +K +QL
Sbjct: 212 FSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQL 259
>pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
pdb|3FWV|B Chain B, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
Length = 128
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 7/113 (6%)
Query: 11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEAD 70
+KQA + + GN + K + A+ Y +A L P Y N+A + ++ D+ K
Sbjct: 1 SKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYIVNQAAVYFEKGDYNKCREL 60
Query: 71 CRKAIQLDHDSVKGHYL-------LGQTLLQRNEYADGIKELEKALNLGRGAK 116
C KAI++ ++ + + + +G + + +Y D I K+L R K
Sbjct: 61 CEKAIEVGRENREDYRMIAYAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPK 113
>pdb|2QIZ|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase
Ufd2p
Length = 982
Score = 39.3 bits (90), Expect = 0.003, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 193 RKA--AEDDTPAEVPDYLCCKITLDIFRDPVITP-SGVTYERAVILDHLDKVGKFDPITR 249
RKA ED +VPD + I +DPVI P S + +R+ I HL DP R
Sbjct: 889 RKADEEEDLEYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNR 947
Query: 250 EPLRESQLVPNLAIKEAVRAY 270
PL+ + PN +++ + +
Sbjct: 948 MPLKLEDVTPNEELRQKILCF 968
>pdb|3M62|A Chain A, Crystal Structure Of Ufd2 In Complex With The
Ubiquitin-Like (Ubl) Domain Of Rad23
pdb|3M63|A Chain A, Crystal Structure Of Ufd2 In Complex With The
Ubiquitin-Like (Ubl) Domain Of Dsk2
Length = 968
Score = 39.3 bits (90), Expect = 0.003, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 193 RKA--AEDDTPAEVPDYLCCKITLDIFRDPVITP-SGVTYERAVILDHLDKVGKFDPITR 249
RKA ED +VPD + I +DPVI P S + +R+ I HL DP R
Sbjct: 875 RKADEEEDLEYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNR 933
Query: 250 EPLRESQLVPNLAIKEAVRAY 270
PL+ + PN +++ + +
Sbjct: 934 MPLKLEDVTPNEELRQKILCF 954
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 21 GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
GN Y+ + Y AI+ Y +A+ L PN W N + K+ D+ + +KA++LD +
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 81 SVKGHYLLGQT 91
+ + LG
Sbjct: 76 NAEAKQNLGNA 86
Score = 33.9 bits (76), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%)
Query: 51 WTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALN 110
W N + K+ D+ + +KA++LD ++ + Y LG ++ +Y + I+ +KAL
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 111 L 111
L
Sbjct: 72 L 72
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 53 NRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL- 111
N A+CHLK ++ C KA++LD ++ KG G+ L N++ + +K L L
Sbjct: 201 NLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 260
Query: 112 --GRGAKPKGYIVED-IWQELARAKYL 135
+ AK + + + I ++LAR K L
Sbjct: 261 PNNKAAKTQLAVCQQRIRRQLAREKKL 287
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 30 YGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQL 77
+ AAI++ +A+ L N + R HL ND+ AD +K +QL
Sbjct: 212 FSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259
>pdb|2QJ0|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase
Ufd2p
Length = 982
Score = 38.5 bits (88), Expect = 0.005, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 193 RKA--AEDDTPAEVPDYLCCKITLDIFRDPVITP-SGVTYERAVILDHLDKVGKFDPITR 249
RKA ED +VPD + I +DPVI P S +R+ I HL DP R
Sbjct: 889 RKADEEEDLEYGDVPDEFLDPLXYTIXKDPVILPASKXNIDRSTIKAHLLS-DSTDPFNR 947
Query: 250 EPLRESQLVPNLAIKEAVRAY 270
PL+ + PN +++ + +
Sbjct: 948 XPLKLEDVTPNEELRQKILCF 968
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADC 71
K A L+ GN +F +Y AI Y A+ L + P++++N + C++ D KV
Sbjct: 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEMS 62
Query: 72 RKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKAL 109
KA++L D K LL+R +G+ + A+
Sbjct: 63 TKALELKPDYSK-------VLLRRASANEGLGKFADAM 93
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADC 71
K A L G + F K+ A + +AI L P V Y AL RND T+
Sbjct: 235 KLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIY-MALIMADRNDSTEYYNYF 293
Query: 72 RKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
KA++LD ++ +Y GQ Y K+ +KA L
Sbjct: 294 DKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL 333
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 118
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%)
Query: 210 CKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRA 269
C I L R+ V TP G + +A I+ + G P+ E L E+QL P+ K + +
Sbjct: 21 CPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILS 80
Query: 270 YMDK 273
M K
Sbjct: 81 LMVK 84
>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
Length = 170
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%)
Query: 210 CKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRA 269
C I L R+ V TP G + +A I+ + G P+ E L E+QL P+ K + +
Sbjct: 21 CPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILS 80
Query: 270 YMDK 273
M K
Sbjct: 81 LMVK 84
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 43/111 (38%), Gaps = 16/111 (14%)
Query: 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAI----------------TLCPNVPIYWTNRALC 57
+E L+ GN +F + AI YT+ + L P N C
Sbjct: 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGAC 282
Query: 58 HLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKA 108
LK +DW C +A+++D + K Y Q EY + +L+KA
Sbjct: 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKA 333
>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal
Seven Residues Of Hcn2
Length = 365
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 9/123 (7%)
Query: 21 GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTK--VEADCRKAIQLD 78
G + + AIDA+ A+T+ P W NR L D ++ VEA R A+++
Sbjct: 220 GVLFHLSGEFNRAIDAFNAALTVRPEDYSLW-NRLGATLANGDRSEEAVEAYTR-ALEIQ 277
Query: 79 HDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAK-----PKGYIVEDIWQELARAK 133
++ Y LG + + Y + + AL+L R ++ P I +IW L A
Sbjct: 278 PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIAL 337
Query: 134 YLL 136
L+
Sbjct: 338 SLM 340
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 51 WTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALN 110
W N + K+ D+ + +KA++LD S + Y LG ++ +Y + I+ +KAL
Sbjct: 6 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 65
Query: 111 L 111
L
Sbjct: 66 L 66
Score = 34.3 bits (77), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 21 GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD 78
GN Y+ + Y AI+ Y +A+ L P W N + K+ D+ + +KA++LD
Sbjct: 10 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 67
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 35.0 bits (79), Expect = 0.048, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 210 CKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVP-NLAIKE 265
C I L R+ V TP G + +A I+ + G P+ E L E+QL P N A +E
Sbjct: 28 CPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKRE 84
>pdb|2E2E|A Chain A, Tpr Domain Of Nrfg Mediates The Complex Formation Between
Heme Lyase And Formate-Dependent Nitrite Reductase In
Escherichia Coli O157:h7
pdb|2E2E|B Chain B, Tpr Domain Of Nrfg Mediates The Complex Formation Between
Heme Lyase And Formate-Dependent Nitrite Reductase In
Escherichia Coli O157:h7
Length = 177
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 3/117 (2%)
Query: 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL-CPNVPIYWTNRALCHLKRND--WTKVE 68
+ +EQ L G YY ++ Y ++ AY +A+ L N +Y + + + + +
Sbjct: 42 QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTR 101
Query: 69 ADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDI 125
A KA+ LD + + LL + YA I+ +K ++L + +VE I
Sbjct: 102 AMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESI 158
>pdb|2BAY|A Chain A, Crystal Structure Of The Prp19 U-Box Dimer
pdb|2BAY|B Chain B, Crystal Structure Of The Prp19 U-Box Dimer
pdb|2BAY|C Chain C, Crystal Structure Of The Prp19 U-Box Dimer
pdb|2BAY|D Chain D, Crystal Structure Of The Prp19 U-Box Dimer
pdb|2BAY|E Chain E, Crystal Structure Of The Prp19 U-Box Dimer
pdb|2BAY|F Chain F, Crystal Structure Of The Prp19 U-Box Dimer
Length = 61
Score = 34.7 bits (78), Expect = 0.062, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 207 YLCCKITLDIFRDPVITPSGVT-YERAVILDHLDKVGKFDPITREPLRESQLV 258
++ C I+ + R PV++P T +E++++ ++ G DPIT EPL ++V
Sbjct: 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGN-DPITNEPLSIEEIV 54
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 34.3 bits (77), Expect = 0.078, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 210 CKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPN 260
C I L R+ V TP G + +A I+ + G P+ E L E+QL P+
Sbjct: 9 CPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD 59
>pdb|1N87|A Chain A, Solution Structure Of The U-Box Of Prp19
Length = 56
Score = 33.9 bits (76), Expect = 0.098, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 208 LCCKITLDIFRDPVITPSGVT-YERAVILDHLDKVGKFDPITREPLRESQLV 258
+ C I+ + R PV++P T +E++++ ++ G DPIT EPL ++V
Sbjct: 1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGN-DPITNEPLSIEEIV 51
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 16/94 (17%)
Query: 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLC---------------PNVPIYWT-NRA 55
+ A ++ +GN +F K+ AI Y EA+ N+ I N A
Sbjct: 36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95
Query: 56 LCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLG 89
C+ K D+ K K +++D ++VK Y LG
Sbjct: 96 TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLG 129
>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative
Peptidylprolyl Isomerase, From Caenorhabditis Elegans
Length = 162
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 20/94 (21%)
Query: 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLC-------------------PNVPIYWT 52
K E LR GN F + Y AIDAY +A+T N+P+Y
Sbjct: 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLY-A 67
Query: 53 NRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHY 86
N + C+L D + E + ++ + + K +
Sbjct: 68 NMSQCYLNIGDLHEAEETSSEVLKREETNEKALF 101
>pdb|1RMD|A Chain A, Rag1 Dimerization Domain
Length = 116
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 25/59 (42%)
Query: 199 DTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQL 257
D PA + C+I I DPV T + R IL L +G + P R P + L
Sbjct: 15 DFPAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL 73
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 45/107 (42%)
Query: 30 YGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLG 89
Y A +A+T+AI I + N A N+ + A KA++LD + +Y G
Sbjct: 39 YEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAG 98
Query: 90 QTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLL 136
+ + Y + EKAL G Y++ + +L + K L
Sbjct: 99 NVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLAL 145
>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1)
From C.Elegans
pdb|4GCN|B Chain B, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1)
From C.Elegans
Length = 127
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/72 (19%), Positives = 35/72 (48%)
Query: 21 GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
GN + + + A Y +AI L P+ ++ N+A + + + + C KA+++ +
Sbjct: 15 GNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE 74
Query: 81 SVKGHYLLGQTL 92
+ + L+ + +
Sbjct: 75 TRADYKLIAKAM 86
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 60 KRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGR 113
K+ D+ K KAI+LD ++ + + ++A+ ++ EKA+ +GR
Sbjct: 20 KQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR 73
>pdb|2L48|A Chain A, Solution Structure Of The Plyg Cell Wall Binding Domain
pdb|2L48|B Chain B, Solution Structure Of The Plyg Cell Wall Binding Domain
Length = 85
Score = 29.3 bits (64), Expect = 2.6, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 24/80 (30%)
Query: 200 TPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVP 259
+P E PD + +L + D ++ G+TY +P ++QL
Sbjct: 28 SPYETPDVMGALTSLKMTADFILQSDGLTY-----------------FISKPTSDAQL-- 68
Query: 260 NLAIKEAVRAYMDKHGWAYK 279
+A++ Y+D+ GW Y+
Sbjct: 69 -----KAMKEYLDRKGWWYE 83
>pdb|2KCK|A Chain A, Nmr Solution Structure Of The Northeast Structural
Genomics Consortium (Nesg) Target Mrr121a
Length = 112
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYW--TNRALCHLKR 61
V + E+ L+G + Y +ID + +AI L P YW +AL +L+R
Sbjct: 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLER 55
>pdb|2Z1K|A Chain A, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|B Chain B, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|C Chain C, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|D Chain D, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
Length = 475
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 18/96 (18%)
Query: 39 EAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLL----GQTLLQ 94
+A T PN +W N L LK VE + L +V H++ G L
Sbjct: 153 KAYTAHPNYEAWWGNPELPKLK------VETPAVREYLL---AVAEHWIRFGVDGWRLDV 203
Query: 95 RNEYADGI--KELEKALNLGRGAKPKGYIVEDIWQE 128
NE D +E + + +GA P+ YIV +IW+E
Sbjct: 204 PNEIPDPTFWREFRQRV---KGANPEAYIVGEIWEE 236
>pdb|1OW0|A Chain A, Crystal Structure Of Human Fcari Bound To Iga1-fc
pdb|1OW0|B Chain B, Crystal Structure Of Human Fcari Bound To Iga1-fc
Length = 214
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
Query: 102 IKELEKALNLGRGAKPKGYIVEDIW----QELARAKYLLW--EQESSK 143
+ EL L RG PK +V W QEL R KYL W QE S+
Sbjct: 121 LNELVTLTCLARGFSPKDVLVR--WLQGSQELPREKYLTWASRQEPSQ 166
>pdb|1R70|B Chain B, Model Of Human Iga2 Determined By Solution Scattering,
Curve Fitting And Homology Modelling
pdb|1R70|D Chain D, Model Of Human Iga2 Determined By Solution Scattering,
Curve Fitting And Homology Modelling
pdb|3CM9|A Chain A, Solution Structure Of Human Siga2
pdb|3CM9|B Chain B, Solution Structure Of Human Siga2
pdb|3CM9|C Chain C, Solution Structure Of Human Siga2
pdb|3CM9|D Chain D, Solution Structure Of Human Siga2
Length = 462
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
Query: 102 IKELEKALNLGRGAKPKGYIVEDIW----QELARAKYLLW--EQESSK 143
+ EL L RG PK +V W QEL R KYL W QE S+
Sbjct: 351 LNELVTLTCLARGFSPKDVLVR--WLQGSQELPREKYLTWASRQEPSQ 396
>pdb|1IGA|A Chain A, Model Of Human Iga1 Determined By Solution Scattering
Curve- Fitting And Homology Modelling
pdb|1IGA|B Chain B, Model Of Human Iga1 Determined By Solution Scattering
Curve- Fitting And Homology Modelling
pdb|2ESG|A Chain A, Solution Structure Of The Complex Between Immunoglobulin
Iga1 And Human Serum Albumin
pdb|2ESG|B Chain B, Solution Structure Of The Complex Between Immunoglobulin
Iga1 And Human Serum Albumin
pdb|2QTJ|A Chain A, Solution Structure Of Human Dimeric Immunoglobulin A
pdb|2QTJ|B Chain B, Solution Structure Of Human Dimeric Immunoglobulin A
pdb|2QTJ|C Chain C, Solution Structure Of Human Dimeric Immunoglobulin A
pdb|2QTJ|D Chain D, Solution Structure Of Human Dimeric Immunoglobulin A
pdb|3CHN|A Chain A, Solution Structure Of Human Secretory Iga1
pdb|3CHN|B Chain B, Solution Structure Of Human Secretory Iga1
pdb|3CHN|D Chain D, Solution Structure Of Human Secretory Iga1
pdb|3CHN|C Chain C, Solution Structure Of Human Secretory Iga1
Length = 475
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
Query: 102 IKELEKALNLGRGAKPKGYIVEDIW----QELARAKYLLW--EQESSK 143
+ EL L RG PK +V W QEL R KYL W QE S+
Sbjct: 364 LNELVTLTCLARGFSPKDVLVR--WLQGSQELPREKYLTWASRQEPSQ 409
>pdb|2QEJ|A Chain A, Crystal Structure Of A Staphylococcus Aureus Protein
(Ssl7) In Complex With Fc Of Human Iga1
pdb|2QEJ|B Chain B, Crystal Structure Of A Staphylococcus Aureus Protein
(Ssl7) In Complex With Fc Of Human Iga1
Length = 216
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
Query: 102 IKELEKALNLGRGAKPKGYIVEDIW----QELARAKYLLW--EQESSK 143
+ EL L RG PK +V W QEL R KYL W QE S+
Sbjct: 122 LNELVTLTCLARGFSPKDVLVR--WLQGSQELPREKYLTWASRQEPSQ 167
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,403,746
Number of Sequences: 62578
Number of extensions: 342077
Number of successful extensions: 831
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 743
Number of HSP's gapped (non-prelim): 88
length of query: 281
length of database: 14,973,337
effective HSP length: 98
effective length of query: 183
effective length of database: 8,840,693
effective search space: 1617846819
effective search space used: 1617846819
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)