Query 023501
Match_columns 281
No_of_seqs 332 out of 3093
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 04:31:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023501.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023501hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4642 Chaperone-dependent E3 100.0 9.4E-41 2E-45 260.4 18.0 268 11-280 7-284 (284)
2 PF04564 U-box: U-box domain; 99.9 2E-24 4.3E-29 143.6 5.3 73 204-276 1-73 (73)
3 KOG0553 TPR repeat-containing 99.9 2.2E-21 4.9E-26 157.6 14.0 106 10-115 77-182 (304)
4 smart00504 Ubox Modified RING 99.8 6.7E-19 1.5E-23 114.4 4.7 63 207-270 1-63 (63)
5 PRK15359 type III secretion sy 99.8 3.3E-17 7.2E-22 124.5 14.8 113 2-117 15-127 (144)
6 KOG0548 Molecular co-chaperone 99.7 3.6E-17 7.8E-22 142.0 14.6 119 9-134 353-471 (539)
7 KOG4234 TPR repeat-containing 99.7 3.5E-16 7.7E-21 120.2 15.9 104 11-114 92-200 (271)
8 PRK15363 pathogenicity island 99.7 2.2E-15 4.8E-20 113.1 15.3 106 8-113 28-134 (157)
9 TIGR02552 LcrH_SycD type III s 99.7 2.5E-15 5.5E-20 112.9 14.9 114 2-115 5-118 (135)
10 KOG0543 FKBP-type peptidyl-pro 99.7 5E-15 1.1E-19 125.5 15.7 119 11-136 205-338 (397)
11 PRK10370 formate-dependent nit 99.7 5.4E-15 1.2E-19 118.2 15.2 112 3-114 62-176 (198)
12 KOG4626 O-linked N-acetylgluco 99.7 1.3E-15 2.8E-20 134.4 12.5 132 4-135 242-373 (966)
13 KOG4626 O-linked N-acetylgluco 99.6 2.1E-15 4.6E-20 133.1 13.1 161 4-164 276-454 (966)
14 PLN03088 SGT1, suppressor of 99.6 6.4E-15 1.4E-19 128.3 15.8 100 15-114 3-102 (356)
15 KOG0547 Translocase of outer m 99.6 4.3E-15 9.3E-20 127.8 14.2 101 11-112 112-212 (606)
16 KOG0548 Molecular co-chaperone 99.6 1.9E-15 4.1E-20 131.4 11.9 101 14-114 2-102 (539)
17 TIGR00990 3a0801s09 mitochondr 99.6 3.3E-14 7.2E-19 133.0 19.1 102 12-113 329-430 (615)
18 PRK11189 lipoprotein NlpI; Pro 99.6 4.1E-14 8.8E-19 120.5 14.6 106 10-115 60-165 (296)
19 KOG4648 Uncharacterized conser 99.6 7E-15 1.5E-19 121.7 8.6 103 12-114 95-197 (536)
20 KOG1126 DNA-binding cell divis 99.6 1.1E-14 2.3E-19 129.5 9.9 133 4-136 411-543 (638)
21 TIGR00990 3a0801s09 mitochondr 99.6 2.6E-13 5.6E-18 127.1 18.5 146 3-164 354-499 (615)
22 KOG0551 Hsp90 co-chaperone CNS 99.5 5.6E-13 1.2E-17 110.0 16.7 104 9-112 76-183 (390)
23 KOG0547 Translocase of outer m 99.5 8.5E-13 1.8E-17 113.9 18.1 124 4-127 350-473 (606)
24 KOG0624 dsRNA-activated protei 99.5 8E-13 1.7E-17 109.7 16.6 151 9-163 33-186 (504)
25 PRK12370 invasion protein regu 99.5 5.8E-13 1.3E-17 122.9 17.4 115 2-116 283-406 (553)
26 COG3063 PilF Tfp pilus assembl 99.5 1.1E-12 2.4E-17 103.3 15.3 142 11-166 32-173 (250)
27 KOG1155 Anaphase-promoting com 99.5 3.8E-12 8.3E-17 109.3 18.5 144 2-161 352-495 (559)
28 PF13414 TPR_11: TPR repeat; P 99.5 1.3E-13 2.8E-18 91.1 7.7 67 13-79 2-69 (69)
29 PRK12370 invasion protein regu 99.5 7.7E-13 1.7E-17 122.1 15.4 110 3-112 327-436 (553)
30 KOG0550 Molecular chaperone (D 99.5 3E-13 6.6E-18 114.4 11.5 105 10-114 245-353 (486)
31 KOG1126 DNA-binding cell divis 99.5 1.3E-13 2.7E-18 122.8 9.2 134 2-135 443-576 (638)
32 PRK15174 Vi polysaccharide exp 99.5 4.4E-12 9.5E-17 119.2 18.5 108 7-114 239-350 (656)
33 KOG1125 TPR repeat-containing 99.5 3.9E-13 8.5E-18 118.0 10.3 130 2-131 417-550 (579)
34 PRK09782 bacteriophage N4 rece 99.5 2.8E-12 6.1E-17 124.0 16.9 114 3-117 599-712 (987)
35 PRK09782 bacteriophage N4 rece 99.4 6E-12 1.3E-16 121.7 18.2 142 6-164 568-709 (987)
36 TIGR03302 OM_YfiO outer membra 99.4 2.4E-11 5.2E-16 100.1 18.5 151 9-163 28-197 (235)
37 COG3063 PilF Tfp pilus assembl 99.4 6.7E-12 1.4E-16 99.0 14.0 143 2-160 57-201 (250)
38 TIGR00599 rad18 DNA repair pro 99.4 1.1E-13 2.4E-18 119.3 4.2 72 202-274 21-92 (397)
39 TIGR02521 type_IV_pilW type IV 99.4 3.1E-11 6.7E-16 98.1 18.5 139 11-163 28-166 (234)
40 TIGR02521 type_IV_pilW type IV 99.4 1.6E-11 3.5E-16 99.8 16.2 143 3-161 54-198 (234)
41 TIGR02795 tol_pal_ybgF tol-pal 99.4 1.1E-11 2.3E-16 90.7 13.4 102 14-115 2-109 (119)
42 PRK15359 type III secretion sy 99.4 2.6E-12 5.6E-17 97.6 10.4 94 3-96 47-140 (144)
43 cd00189 TPR Tetratricopeptide 99.4 8.5E-12 1.8E-16 86.3 12.1 98 16-113 2-99 (100)
44 PF15227 zf-C3HC4_4: zinc fing 99.4 1.6E-13 3.4E-18 80.3 2.6 39 210-248 1-42 (42)
45 PLN03208 E3 ubiquitin-protein 99.4 1.8E-13 4E-18 105.4 3.7 62 201-262 12-88 (193)
46 PF12895 Apc3: Anaphase-promot 99.4 1.5E-12 3.2E-17 89.6 7.8 82 26-108 1-84 (84)
47 PF13414 TPR_11: TPR repeat; P 99.4 2.1E-12 4.6E-17 85.2 8.2 67 47-113 2-69 (69)
48 PRK11189 lipoprotein NlpI; Pro 99.4 6.1E-11 1.3E-15 101.1 18.3 108 3-111 87-194 (296)
49 PRK15179 Vi polysaccharide bio 99.4 1.8E-11 3.9E-16 114.3 16.1 108 10-117 82-189 (694)
50 PRK10370 formate-dependent nit 99.4 2E-11 4.3E-16 97.7 14.2 122 27-164 52-176 (198)
51 PRK11788 tetratricopeptide rep 99.4 8.3E-11 1.8E-15 104.1 19.6 111 4-114 131-246 (389)
52 PRK11447 cellulose synthase su 99.4 2.7E-11 5.9E-16 120.8 18.0 115 3-117 292-420 (1157)
53 COG4235 Cytochrome c biogenesi 99.4 2.3E-11 4.9E-16 100.1 14.4 115 3-117 145-262 (287)
54 PRK02603 photosystem I assembl 99.4 2E-11 4.3E-16 95.7 13.6 108 7-114 28-152 (172)
55 PRK15331 chaperone protein Sic 99.4 2.1E-11 4.5E-16 92.2 12.5 106 6-111 29-134 (165)
56 COG5010 TadD Flp pilus assembl 99.3 2.8E-11 6.1E-16 97.3 13.3 106 8-113 94-199 (257)
57 KOG0376 Serine-threonine phosp 99.3 2.4E-12 5.2E-17 111.4 7.7 102 13-114 3-104 (476)
58 PRK15174 Vi polysaccharide exp 99.3 4.7E-11 1E-15 112.3 17.1 101 17-117 215-319 (656)
59 PRK11788 tetratricopeptide rep 99.3 5.9E-11 1.3E-15 105.0 16.6 104 12-115 105-213 (389)
60 KOG0545 Aryl-hydrocarbon recep 99.3 9.2E-11 2E-15 93.3 14.2 103 12-114 176-296 (329)
61 KOG0624 dsRNA-activated protei 99.3 3.4E-10 7.3E-15 94.3 17.6 147 14-164 155-301 (504)
62 KOG1125 TPR repeat-containing 99.3 1.3E-10 2.9E-15 102.4 15.8 172 2-195 307-555 (579)
63 CHL00033 ycf3 photosystem I as 99.3 1.5E-10 3.2E-15 90.4 14.0 106 9-114 30-152 (168)
64 PLN02789 farnesyltranstransfer 99.3 9.7E-11 2.1E-15 100.2 13.4 116 2-117 59-177 (320)
65 PRK11447 cellulose synthase su 99.3 1.3E-10 2.8E-15 116.1 16.3 115 3-117 374-530 (1157)
66 PF13432 TPR_16: Tetratricopep 99.3 2.8E-11 6E-16 78.8 7.6 64 19-82 2-65 (65)
67 TIGR03302 OM_YfiO outer membra 99.3 2.5E-10 5.5E-15 94.0 15.1 103 13-115 69-199 (235)
68 PRK15179 Vi polysaccharide bio 99.2 2.9E-10 6.2E-15 106.3 16.4 111 2-112 108-218 (694)
69 TIGR02917 PEP_TPR_lipo putativ 99.2 3.5E-10 7.6E-15 109.5 17.7 110 5-114 558-667 (899)
70 PF13429 TPR_15: Tetratricopep 99.2 3E-11 6.6E-16 102.2 8.9 104 11-114 143-246 (280)
71 TIGR02917 PEP_TPR_lipo putativ 99.2 2.1E-10 4.5E-15 111.1 15.1 99 15-114 737-835 (899)
72 KOG1155 Anaphase-promoting com 99.2 1.6E-09 3.5E-14 93.4 18.4 149 4-161 388-536 (559)
73 KOG0287 Postreplication repair 99.2 3.3E-12 7.1E-17 104.8 1.9 65 206-271 22-86 (442)
74 KOG0823 Predicted E3 ubiquitin 99.2 5.9E-12 1.3E-16 98.8 2.6 57 205-261 45-103 (230)
75 TIGR02552 LcrH_SycD type III s 99.2 3.3E-10 7.2E-15 84.9 11.9 113 35-163 4-116 (135)
76 KOG1173 Anaphase-promoting com 99.2 2E-10 4.3E-15 101.0 10.8 112 3-114 403-521 (611)
77 PF13432 TPR_16: Tetratricopep 99.2 1.3E-10 2.8E-15 75.6 7.0 64 52-115 1-64 (65)
78 KOG0317 Predicted E3 ubiquitin 99.1 2.1E-11 4.5E-16 98.6 3.1 56 202-258 234-289 (293)
79 KOG4162 Predicted calmodulin-b 99.1 5.4E-10 1.2E-14 101.5 12.2 115 2-116 672-788 (799)
80 PLN03088 SGT1, suppressor of 99.1 4.3E-10 9.4E-15 98.1 11.2 95 2-96 24-118 (356)
81 PRK10803 tol-pal system protei 99.1 1.6E-09 3.4E-14 90.2 13.9 102 14-115 142-250 (263)
82 PLN02789 farnesyltranstransfer 99.1 2.9E-09 6.2E-14 91.2 15.9 139 10-164 33-174 (320)
83 COG4783 Putative Zn-dependent 99.1 6.6E-09 1.4E-13 90.4 18.1 148 12-159 304-452 (484)
84 PRK10049 pgaA outer membrane p 99.1 7.2E-10 1.6E-14 106.2 13.5 108 9-117 44-151 (765)
85 KOG0553 TPR repeat-containing 99.1 2.7E-10 5.7E-15 93.4 8.9 98 2-99 103-200 (304)
86 COG5432 RAD18 RING-finger-cont 99.1 2.4E-11 5.2E-16 97.8 2.6 64 206-270 24-87 (391)
87 PF13923 zf-C3HC4_2: Zinc fing 99.1 2.7E-11 5.8E-16 70.1 2.1 38 210-248 1-39 (39)
88 PF14559 TPR_19: Tetratricopep 99.1 3.1E-10 6.6E-15 74.5 7.4 68 24-91 1-68 (68)
89 PF14835 zf-RING_6: zf-RING of 99.1 7E-11 1.5E-15 73.5 3.7 58 207-267 7-65 (65)
90 PF13371 TPR_9: Tetratricopept 99.1 6.1E-10 1.3E-14 74.2 8.5 70 21-90 2-71 (73)
91 PF13525 YfiO: Outer membrane 99.1 1.2E-08 2.6E-13 82.1 17.3 149 12-164 3-173 (203)
92 PRK10866 outer membrane biogen 99.1 1.5E-08 3.3E-13 83.6 17.7 149 12-164 30-207 (243)
93 KOG4555 TPR repeat-containing 99.1 7.2E-09 1.6E-13 74.8 13.4 101 12-112 41-145 (175)
94 KOG2076 RNA polymerase III tra 99.1 2E-08 4.4E-13 92.9 19.3 102 14-115 139-240 (895)
95 KOG0320 Predicted E3 ubiquitin 99.1 5.2E-11 1.1E-15 89.4 1.7 53 206-259 130-184 (187)
96 KOG1308 Hsp70-interacting prot 99.1 1E-10 2.3E-15 97.2 3.6 102 12-113 112-213 (377)
97 KOG0550 Molecular chaperone (D 99.1 5.7E-09 1.2E-13 88.9 13.9 140 8-163 197-352 (486)
98 KOG2002 TPR-containing nuclear 99.1 4.7E-09 1E-13 97.6 14.4 128 2-129 258-389 (1018)
99 PRK10049 pgaA outer membrane p 99.0 5.9E-09 1.3E-13 100.0 15.5 132 17-164 313-459 (765)
100 PF13429 TPR_15: Tetratricopep 99.0 4.4E-10 9.5E-15 95.1 7.0 110 2-111 168-277 (280)
101 KOG2076 RNA polymerase III tra 99.0 2.1E-08 4.6E-13 92.7 17.9 112 2-113 161-272 (895)
102 PRK15363 pathogenicity island 99.0 1.4E-08 2.9E-13 76.7 13.3 105 41-161 27-132 (157)
103 PF12688 TPR_5: Tetratrico pep 99.0 1.2E-08 2.6E-13 74.3 12.7 97 15-111 2-104 (120)
104 PF09976 TPR_21: Tetratricopep 99.0 7.6E-09 1.6E-13 78.7 12.2 97 12-109 46-145 (145)
105 PF13512 TPR_18: Tetratricopep 99.0 1.8E-08 4E-13 74.7 13.3 104 12-115 8-132 (142)
106 PRK14574 hmsH outer membrane p 99.0 1.5E-08 3.3E-13 96.6 16.1 109 9-117 29-137 (822)
107 COG4783 Putative Zn-dependent 99.0 2.2E-08 4.8E-13 87.1 15.3 111 3-113 329-439 (484)
108 KOG1941 Acetylcholine receptor 99.0 5.8E-08 1.3E-12 81.7 16.2 215 15-250 163-413 (518)
109 PF00097 zf-C3HC4: Zinc finger 99.0 3.8E-10 8.3E-15 66.1 2.5 39 210-248 1-41 (41)
110 KOG2003 TPR repeat-containing 99.0 9.4E-09 2E-13 88.7 11.6 113 4-116 480-592 (840)
111 COG5010 TadD Flp pilus assembl 99.0 2.5E-08 5.4E-13 80.5 13.3 110 7-117 60-169 (257)
112 COG2956 Predicted N-acetylgluc 98.9 1.3E-07 2.7E-12 78.6 17.5 116 12-133 139-259 (389)
113 PHA02929 N1R/p28-like protein; 98.9 5E-10 1.1E-14 90.4 3.5 48 205-253 172-227 (238)
114 PLN03098 LPA1 LOW PSII ACCUMUL 98.9 2E-08 4.3E-13 87.7 12.6 70 9-78 70-142 (453)
115 PLN03098 LPA1 LOW PSII ACCUMUL 98.9 6.6E-09 1.4E-13 90.6 9.3 69 43-111 70-141 (453)
116 KOG3060 Uncharacterized conser 98.9 2.8E-07 6.2E-12 74.1 17.8 107 9-115 81-187 (289)
117 KOG3060 Uncharacterized conser 98.9 8.9E-08 1.9E-12 76.9 14.9 112 3-114 109-223 (289)
118 PRK10153 DNA-binding transcrip 98.9 2.1E-08 4.5E-13 91.3 12.2 114 2-116 364-487 (517)
119 PF13920 zf-C3HC4_3: Zinc fing 98.9 8.8E-10 1.9E-14 67.5 2.3 46 207-253 2-48 (50)
120 COG4785 NlpI Lipoprotein NlpI, 98.9 2.6E-08 5.7E-13 78.2 11.0 106 9-114 60-165 (297)
121 PF13445 zf-RING_UBOX: RING-ty 98.9 5.4E-10 1.2E-14 65.2 1.2 36 210-246 1-43 (43)
122 KOG2042 Ubiquitin fusion degra 98.9 2.5E-08 5.4E-13 93.8 12.6 72 202-274 865-937 (943)
123 KOG1173 Anaphase-promoting com 98.9 8.5E-08 1.8E-12 84.8 15.2 185 8-192 306-516 (611)
124 PF11789 zf-Nse: Zinc-finger o 98.9 6E-10 1.3E-14 69.5 1.4 44 206-249 10-55 (57)
125 COG1729 Uncharacterized protei 98.9 5.5E-08 1.2E-12 79.4 13.0 103 14-116 141-249 (262)
126 PRK11906 transcriptional regul 98.9 3.4E-08 7.3E-13 86.4 12.4 113 2-114 280-404 (458)
127 cd05804 StaR_like StaR_like; a 98.9 3.2E-08 7E-13 86.4 12.5 105 9-113 109-217 (355)
128 PF13371 TPR_9: Tetratricopept 98.9 6.4E-09 1.4E-13 69.2 6.1 60 55-114 2-61 (73)
129 CHL00033 ycf3 photosystem I as 98.9 5.2E-08 1.1E-12 76.0 12.1 95 22-116 7-106 (168)
130 KOG1128 Uncharacterized conser 98.9 1.3E-07 2.9E-12 85.8 15.7 102 13-114 484-585 (777)
131 KOG0543 FKBP-type peptidyl-pro 98.8 5.3E-08 1.2E-12 83.2 12.3 100 14-113 257-357 (397)
132 PF13424 TPR_12: Tetratricopep 98.8 1.3E-08 2.8E-13 68.6 6.9 67 11-77 2-75 (78)
133 PRK14574 hmsH outer membrane p 98.8 1.1E-07 2.3E-12 90.9 15.3 112 3-114 57-168 (822)
134 PF09295 ChAPs: ChAPs (Chs5p-A 98.8 5.4E-08 1.2E-12 85.1 12.0 95 14-108 200-294 (395)
135 KOG1840 Kinesin light chain [C 98.8 1.7E-07 3.7E-12 84.3 15.5 149 10-167 237-402 (508)
136 KOG2002 TPR-containing nuclear 98.8 5.6E-08 1.2E-12 90.7 12.2 115 4-118 636-752 (1018)
137 PF06552 TOM20_plant: Plant sp 98.8 2.4E-07 5.2E-12 71.0 13.3 85 30-114 7-112 (186)
138 cd05804 StaR_like StaR_like; a 98.8 9.9E-08 2.2E-12 83.4 12.9 102 13-114 42-180 (355)
139 TIGR02795 tol_pal_ybgF tol-pal 98.8 2.3E-07 5.1E-12 67.4 12.5 104 48-164 2-108 (119)
140 TIGR00570 cdk7 CDK-activating 98.8 9.2E-09 2E-13 85.5 5.4 63 206-268 2-73 (309)
141 cd00189 TPR Tetratricopeptide 98.8 2.4E-07 5.2E-12 63.4 11.9 65 50-114 2-66 (100)
142 PF13424 TPR_12: Tetratricopep 98.8 1.7E-08 3.8E-13 68.0 5.9 67 45-111 2-75 (78)
143 PF13639 zf-RING_2: Ring finge 98.8 2.2E-09 4.8E-14 63.8 1.0 40 209-249 2-44 (44)
144 PRK10747 putative protoheme IX 98.8 9.2E-07 2E-11 78.6 18.0 98 17-114 121-219 (398)
145 COG5222 Uncharacterized conser 98.8 1.4E-08 3E-13 82.5 5.6 66 208-273 275-342 (427)
146 PRK11906 transcriptional regul 98.8 2.8E-07 6E-12 80.7 14.0 137 16-168 257-408 (458)
147 KOG2177 Predicted E3 ubiquitin 98.8 5.6E-09 1.2E-13 90.2 3.7 70 205-277 11-80 (386)
148 PRK02603 photosystem I assembl 98.8 1E-07 2.2E-12 74.6 10.4 71 45-115 32-105 (172)
149 PRK10153 DNA-binding transcrip 98.7 4.7E-07 1E-11 82.6 15.8 135 13-164 338-485 (517)
150 KOG1174 Anaphase-promoting com 98.7 1.8E-07 4E-12 80.0 12.2 111 4-114 324-436 (564)
151 KOG1840 Kinesin light chain [C 98.7 1E-06 2.2E-11 79.4 17.6 106 9-114 194-315 (508)
152 KOG1174 Anaphase-promoting com 98.7 2.8E-07 6E-12 78.9 13.2 106 9-114 227-366 (564)
153 PRK14720 transcript cleavage f 98.7 3.5E-07 7.7E-12 87.0 15.0 155 8-164 25-201 (906)
154 COG4700 Uncharacterized protei 98.7 5.3E-06 1.2E-10 63.9 18.4 100 16-115 91-193 (251)
155 PRK14720 transcript cleavage f 98.7 5E-07 1.1E-11 86.0 15.7 107 3-112 54-179 (906)
156 PF14559 TPR_19: Tetratricopep 98.7 8.8E-08 1.9E-12 62.6 7.7 57 58-114 1-57 (68)
157 COG2956 Predicted N-acetylgluc 98.7 9.1E-07 2E-11 73.6 14.9 138 11-164 104-246 (389)
158 TIGR00540 hemY_coli hemY prote 98.7 1.8E-06 3.8E-11 77.1 17.7 95 17-111 121-216 (409)
159 PF12569 NARP1: NMDA receptor- 98.7 3.2E-06 6.9E-11 76.9 18.6 141 13-160 193-333 (517)
160 PHA02926 zinc finger-like prot 98.7 1.3E-08 2.8E-13 79.6 2.7 49 205-253 168-230 (242)
161 COG5574 PEX10 RING-finger-cont 98.7 8.2E-09 1.8E-13 82.7 1.5 53 205-257 213-266 (271)
162 COG4235 Cytochrome c biogenesi 98.7 9.8E-07 2.1E-11 73.0 13.6 118 30-163 138-258 (287)
163 cd00162 RING RING-finger (Real 98.6 2.1E-08 4.6E-13 59.7 2.9 44 209-252 1-45 (45)
164 TIGR00540 hemY_coli hemY prote 98.6 3E-06 6.4E-11 75.7 17.7 118 11-128 81-199 (409)
165 KOG2164 Predicted E3 ubiquitin 98.6 1.3E-08 2.8E-13 88.8 2.5 70 206-275 185-262 (513)
166 KOG1128 Uncharacterized conser 98.6 2E-07 4.4E-12 84.7 10.1 114 3-116 508-621 (777)
167 KOG4159 Predicted E3 ubiquitin 98.6 2.2E-08 4.7E-13 86.9 3.5 73 199-272 76-153 (398)
168 PF09976 TPR_21: Tetratricopep 98.6 2.7E-06 5.9E-11 64.6 14.5 96 12-107 9-110 (145)
169 PF12895 Apc3: Anaphase-promot 98.6 8.6E-08 1.9E-12 65.6 5.5 61 13-74 24-84 (84)
170 KOG1127 TPR repeat-containing 98.6 7.6E-07 1.6E-11 83.6 13.0 97 15-111 563-659 (1238)
171 KOG0495 HAT repeat protein [RN 98.6 2E-06 4.4E-11 77.6 15.2 114 3-117 607-720 (913)
172 COG5113 UFD2 Ubiquitin fusion 98.6 1.2E-07 2.6E-12 84.6 7.4 74 199-273 846-920 (929)
173 KOG1129 TPR repeat-containing 98.6 7.7E-08 1.7E-12 80.0 5.8 109 4-112 280-388 (478)
174 KOG0978 E3 ubiquitin ligase in 98.6 6E-06 1.3E-10 76.0 18.4 54 206-259 642-695 (698)
175 KOG1156 N-terminal acetyltrans 98.6 1.4E-06 3E-11 78.5 13.9 111 4-114 31-141 (700)
176 PF14634 zf-RING_5: zinc-RING 98.6 4.2E-08 9E-13 58.2 2.6 40 210-250 2-44 (44)
177 smart00184 RING Ring finger. E 98.6 4.4E-08 9.6E-13 56.3 2.6 39 210-248 1-39 (39)
178 COG4105 ComL DNA uptake lipopr 98.6 3.5E-05 7.5E-10 62.7 19.9 151 13-163 33-198 (254)
179 PRK10747 putative protoheme IX 98.6 3.1E-06 6.6E-11 75.3 15.3 102 10-114 259-360 (398)
180 KOG1156 N-terminal acetyltrans 98.5 8.7E-06 1.9E-10 73.5 17.6 108 5-112 66-173 (700)
181 KOG1130 Predicted G-alpha GTPa 98.5 8.7E-07 1.9E-11 76.0 10.3 139 12-160 193-343 (639)
182 PRK10803 tol-pal system protei 98.5 2.6E-06 5.6E-11 71.0 13.0 106 48-166 142-251 (263)
183 PF12569 NARP1: NMDA receptor- 98.4 3.6E-05 7.9E-10 70.1 19.1 65 50-114 196-260 (517)
184 KOG1310 WD40 repeat protein [G 98.4 8.3E-07 1.8E-11 78.2 8.1 104 10-113 370-476 (758)
185 KOG1127 TPR repeat-containing 98.4 5.5E-06 1.2E-10 78.0 13.5 113 5-117 483-631 (1238)
186 KOG1129 TPR repeat-containing 98.4 3.4E-06 7.4E-11 70.4 10.6 95 19-114 228-322 (478)
187 PF13428 TPR_14: Tetratricopep 98.4 8.9E-07 1.9E-11 52.5 5.1 42 49-90 2-43 (44)
188 KOG0311 Predicted E3 ubiquitin 98.4 4E-08 8.7E-13 81.8 -1.4 66 205-270 41-108 (381)
189 PF00515 TPR_1: Tetratricopept 98.3 1E-06 2.2E-11 49.0 4.5 32 49-80 2-33 (34)
190 PF13431 TPR_17: Tetratricopep 98.3 5.4E-07 1.2E-11 50.1 3.3 31 71-101 2-32 (34)
191 PF13431 TPR_17: Tetratricopep 98.3 5E-07 1.1E-11 50.2 3.0 33 36-68 1-33 (34)
192 KOG1130 Predicted G-alpha GTPa 98.3 7.9E-06 1.7E-10 70.3 11.6 102 11-112 132-265 (639)
193 KOG2003 TPR repeat-containing 98.3 2.9E-05 6.3E-10 67.6 15.0 102 12-113 556-657 (840)
194 COG1729 Uncharacterized protei 98.3 1.4E-05 3.1E-10 65.5 12.3 104 51-167 144-250 (262)
195 PF13525 YfiO: Outer membrane 98.3 0.00013 2.9E-09 58.6 17.8 117 47-167 4-125 (203)
196 KOG4234 TPR repeat-containing 98.3 6.8E-06 1.5E-10 64.1 9.7 74 11-84 131-204 (271)
197 KOG4162 Predicted calmodulin-b 98.3 2.3E-05 5.1E-10 72.0 14.5 131 15-161 651-783 (799)
198 PF14938 SNAP: Soluble NSF att 98.3 1.8E-05 3.8E-10 67.1 13.0 138 12-160 33-183 (282)
199 PRK10866 outer membrane biogen 98.3 7.8E-05 1.7E-09 61.6 16.1 73 46-118 30-105 (243)
200 KOG4648 Uncharacterized conser 98.3 1.2E-05 2.7E-10 67.6 11.1 98 51-164 100-197 (536)
201 KOG0495 HAT repeat protein [RN 98.3 4.1E-05 8.9E-10 69.5 14.9 114 2-115 673-786 (913)
202 PF04733 Coatomer_E: Coatomer 98.3 6.4E-06 1.4E-10 69.8 9.2 84 29-112 182-266 (290)
203 PF03704 BTAD: Bacterial trans 98.2 7E-05 1.5E-09 56.8 14.1 98 14-111 6-125 (146)
204 PRK15331 chaperone protein Sic 98.2 4.8E-05 1E-09 57.9 12.7 101 44-160 33-133 (165)
205 KOG2660 Locus-specific chromos 98.2 4.5E-07 9.7E-12 75.2 1.5 65 205-270 13-82 (331)
206 PF06552 TOM20_plant: Plant sp 98.2 1E-05 2.2E-10 62.2 8.4 79 6-84 17-116 (186)
207 KOG0297 TNF receptor-associate 98.2 1.8E-06 4E-11 75.9 4.4 69 201-270 15-85 (391)
208 PF12688 TPR_5: Tetratrico pep 98.2 4.5E-05 9.8E-10 55.6 10.8 67 48-114 1-70 (120)
209 PF14938 SNAP: Soluble NSF att 98.2 5.6E-05 1.2E-09 64.0 13.0 109 10-118 110-232 (282)
210 PF13428 TPR_14: Tetratricopep 98.2 5.9E-06 1.3E-10 48.9 5.0 42 15-56 2-43 (44)
211 PF07719 TPR_2: Tetratricopept 98.1 6.1E-06 1.3E-10 45.7 4.8 31 50-80 3-33 (34)
212 COG4785 NlpI Lipoprotein NlpI, 98.1 6E-05 1.3E-09 59.7 11.7 107 4-111 89-196 (297)
213 KOG0289 mRNA splicing factor [ 98.1 1.2E-06 2.6E-11 75.0 1.7 51 208-259 1-52 (506)
214 PF00515 TPR_1: Tetratricopept 98.1 8.6E-06 1.9E-10 45.2 4.6 34 14-47 1-34 (34)
215 PF07719 TPR_2: Tetratricopept 98.1 1.1E-05 2.4E-10 44.7 5.0 34 14-47 1-34 (34)
216 PF12678 zf-rbx1: RING-H2 zinc 98.1 3.3E-06 7.3E-11 55.8 3.1 39 210-249 22-73 (73)
217 PF12968 DUF3856: Domain of Un 98.1 0.00016 3.6E-09 51.5 11.6 98 14-111 7-129 (144)
218 KOG2376 Signal recognition par 98.0 0.00032 6.8E-09 63.1 15.7 141 18-163 83-255 (652)
219 KOG1813 Predicted E3 ubiquitin 98.0 3.4E-06 7.3E-11 68.9 3.2 48 205-253 239-286 (313)
220 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00012 2.5E-09 64.5 12.5 90 22-114 177-266 (395)
221 KOG3039 Uncharacterized conser 97.9 6.2E-06 1.3E-10 65.5 2.6 52 207-259 221-276 (303)
222 PF13512 TPR_18: Tetratricopep 97.9 0.00085 1.8E-08 50.0 13.4 72 47-118 9-83 (142)
223 PF04733 Coatomer_E: Coatomer 97.9 0.00025 5.3E-09 60.2 12.0 103 12-114 129-233 (290)
224 KOG4555 TPR repeat-containing 97.9 0.00043 9.4E-09 50.4 11.2 63 52-114 47-109 (175)
225 KOG2796 Uncharacterized conser 97.8 0.0005 1.1E-08 56.1 12.2 109 10-118 208-322 (366)
226 COG5152 Uncharacterized conser 97.8 4.6E-06 1E-10 64.0 0.6 46 207-253 196-241 (259)
227 PF13181 TPR_8: Tetratricopept 97.8 5E-05 1.1E-09 42.0 4.3 30 50-79 3-32 (34)
228 KOG0824 Predicted E3 ubiquitin 97.8 1.5E-05 3.2E-10 65.4 2.4 47 209-255 9-55 (324)
229 KOG3785 Uncharacterized conser 97.7 0.00093 2E-08 56.8 12.7 100 15-114 58-183 (557)
230 KOG4340 Uncharacterized conser 97.7 0.00068 1.5E-08 56.4 11.6 138 9-162 39-208 (459)
231 KOG3785 Uncharacterized conser 97.7 0.003 6.5E-08 53.9 15.1 87 22-108 30-117 (557)
232 KOG0376 Serine-threonine phosp 97.7 2.7E-05 5.8E-10 68.3 3.0 92 3-94 27-118 (476)
233 KOG0546 HSP90 co-chaperone CPR 97.6 0.00016 3.4E-09 61.3 6.8 103 12-114 220-341 (372)
234 KOG1002 Nucleotide excision re 97.6 2E-05 4.2E-10 69.4 1.5 59 201-259 530-592 (791)
235 KOG2817 Predicted E3 ubiquitin 97.6 0.0071 1.5E-07 52.1 16.7 44 206-249 333-381 (394)
236 PF04781 DUF627: Protein of un 97.6 0.00095 2.1E-08 47.3 9.4 92 20-111 2-107 (111)
237 COG0457 NrfG FOG: TPR repeat [ 97.6 0.0054 1.2E-07 48.5 15.5 98 14-111 59-159 (291)
238 COG3118 Thioredoxin domain-con 97.6 0.0043 9.4E-08 51.7 14.7 103 15-117 135-271 (304)
239 PF04641 Rtf2: Rtf2 RING-finge 97.6 4.7E-05 1E-09 63.5 3.2 54 204-259 110-167 (260)
240 PF10300 DUF3808: Protein of u 97.6 0.00063 1.4E-08 61.7 10.7 109 2-111 255-376 (468)
241 COG3071 HemY Uncharacterized e 97.6 0.0061 1.3E-07 52.6 15.8 106 12-117 82-188 (400)
242 KOG4628 Predicted E3 ubiquitin 97.6 7.1E-05 1.5E-09 63.7 4.0 47 208-254 230-279 (348)
243 COG5540 RING-finger-containing 97.6 3.6E-05 7.8E-10 63.2 2.1 47 208-254 324-373 (374)
244 KOG0802 E3 ubiquitin ligase [P 97.6 2.5E-05 5.4E-10 72.1 1.0 46 206-252 290-340 (543)
245 PF13181 TPR_8: Tetratricopept 97.5 0.00019 4.1E-09 39.6 4.1 33 14-46 1-33 (34)
246 COG3071 HemY Uncharacterized e 97.5 0.0012 2.6E-08 56.8 10.6 119 14-136 263-381 (400)
247 COG0457 NrfG FOG: TPR repeat [ 97.5 0.0095 2.1E-07 47.0 15.6 105 10-114 91-199 (291)
248 PF14853 Fis1_TPR_C: Fis1 C-te 97.5 0.00055 1.2E-08 42.0 6.2 41 50-90 3-43 (53)
249 KOG3824 Huntingtin interacting 97.5 0.00075 1.6E-08 56.3 8.8 61 58-118 126-186 (472)
250 KOG1941 Acetylcholine receptor 97.5 0.0063 1.4E-07 52.1 13.9 100 15-114 123-238 (518)
251 PRK10941 hypothetical protein; 97.4 0.0024 5.2E-08 53.4 11.1 80 49-132 182-261 (269)
252 KOG0551 Hsp90 co-chaperone CNS 97.4 0.009 2E-07 50.5 14.1 87 47-133 80-170 (390)
253 KOG2376 Signal recognition par 97.4 0.0033 7.1E-08 56.8 12.2 93 13-106 11-103 (652)
254 PLN03218 maturation of RBCL 1; 97.4 0.0078 1.7E-07 59.9 16.1 94 17-111 582-678 (1060)
255 KOG4642 Chaperone-dependent E3 97.4 0.00065 1.4E-08 54.6 7.0 61 54-114 16-76 (284)
256 PRK10941 hypothetical protein; 97.4 0.0025 5.5E-08 53.2 10.8 79 14-92 181-259 (269)
257 COG2976 Uncharacterized protei 97.4 0.0035 7.6E-08 49.0 10.6 98 15-114 90-191 (207)
258 PLN03218 maturation of RBCL 1; 97.4 0.0091 2E-07 59.4 16.1 94 15-109 615-711 (1060)
259 KOG0826 Predicted E3 ubiquitin 97.4 5.7E-05 1.2E-09 62.7 0.8 53 205-258 298-351 (357)
260 PLN03081 pentatricopeptide (PP 97.4 0.0014 3.1E-08 62.7 10.4 94 16-111 464-557 (697)
261 PLN03081 pentatricopeptide (PP 97.4 0.0025 5.3E-08 61.1 11.9 97 12-108 288-386 (697)
262 KOG2796 Uncharacterized conser 97.4 0.0077 1.7E-07 49.4 12.8 103 15-117 178-287 (366)
263 KOG2879 Predicted E3 ubiquitin 97.3 0.00015 3.3E-09 58.8 2.9 48 206-253 238-287 (298)
264 KOG3081 Vesicle coat complex C 97.3 0.029 6.2E-07 46.2 15.5 85 27-111 186-270 (299)
265 KOG1915 Cell cycle control pro 97.3 0.023 4.9E-07 50.5 15.9 110 5-114 64-173 (677)
266 COG4700 Uncharacterized protei 97.3 0.041 8.9E-07 43.0 15.5 95 20-115 62-157 (251)
267 PF13176 TPR_7: Tetratricopept 97.3 0.00038 8.2E-09 39.1 3.5 27 85-111 2-28 (36)
268 KOG1308 Hsp70-interacting prot 97.3 0.00022 4.9E-09 60.1 3.5 74 5-78 139-212 (377)
269 PF03704 BTAD: Bacterial trans 97.3 0.0038 8.2E-08 47.2 10.0 65 12-76 60-124 (146)
270 PF05843 Suf: Suppressor of fo 97.3 0.0059 1.3E-07 51.7 12.0 99 16-114 3-102 (280)
271 KOG4814 Uncharacterized conser 97.3 0.0039 8.5E-08 56.9 11.2 97 15-111 355-457 (872)
272 PF12861 zf-Apc11: Anaphase-pr 97.2 0.0002 4.4E-09 47.9 2.2 45 210-254 35-83 (85)
273 KOG4692 Predicted E3 ubiquitin 97.2 0.00026 5.6E-09 59.4 3.2 47 206-253 421-467 (489)
274 KOG3824 Huntingtin interacting 97.2 0.0017 3.7E-08 54.3 7.8 82 10-91 112-193 (472)
275 PF09613 HrpB1_HrpK: Bacterial 97.2 0.011 2.5E-07 44.9 11.7 103 10-113 6-108 (160)
276 PF14561 TPR_20: Tetratricopep 97.2 0.008 1.7E-07 41.4 10.1 66 34-99 8-75 (90)
277 COG5243 HRD1 HRD ubiquitin lig 97.2 0.00022 4.7E-09 60.3 2.6 46 206-252 286-344 (491)
278 KOG0545 Aryl-hydrocarbon recep 97.2 0.0054 1.2E-07 49.7 10.3 73 12-84 228-300 (329)
279 KOG4340 Uncharacterized conser 97.2 0.003 6.5E-08 52.6 9.1 86 23-108 19-104 (459)
280 KOG3039 Uncharacterized conser 97.2 0.00018 4E-09 57.3 2.0 36 205-240 41-76 (303)
281 PF13176 TPR_7: Tetratricopept 97.2 0.00054 1.2E-08 38.4 3.4 25 51-75 2-26 (36)
282 PRK04841 transcriptional regul 97.2 0.018 3.9E-07 56.9 16.3 102 13-114 451-563 (903)
283 PLN03077 Protein ECB2; Provisi 97.2 0.0046 1E-07 60.7 12.0 95 15-111 626-720 (857)
284 PF15015 NYD-SP12_N: Spermatog 97.2 0.0085 1.8E-07 52.2 11.7 94 15-108 177-288 (569)
285 COG4105 ComL DNA uptake lipopr 97.1 0.036 7.7E-07 45.4 14.4 72 47-118 33-107 (254)
286 KOG2053 Mitochondrial inherita 97.1 0.019 4.1E-07 54.4 14.4 91 24-114 19-109 (932)
287 smart00028 TPR Tetratricopepti 97.1 0.0012 2.5E-08 35.0 4.1 30 50-79 3-32 (34)
288 PF13174 TPR_6: Tetratricopept 97.1 0.0013 2.8E-08 35.7 4.1 31 84-114 2-32 (33)
289 PF13174 TPR_6: Tetratricopept 97.0 0.0015 3.2E-08 35.5 4.1 31 50-80 2-32 (33)
290 PF05843 Suf: Suppressor of fo 97.0 0.012 2.5E-07 49.9 11.3 110 5-114 26-139 (280)
291 KOG2053 Mitochondrial inherita 97.0 0.0098 2.1E-07 56.2 11.3 109 5-114 34-142 (932)
292 KOG1586 Protein required for f 97.0 0.08 1.7E-06 42.8 14.7 105 14-118 113-231 (288)
293 PRK04841 transcriptional regul 97.0 0.035 7.5E-07 54.9 15.7 101 14-114 409-523 (903)
294 KOG4507 Uncharacterized conser 96.9 0.0064 1.4E-07 55.1 9.0 91 25-115 618-709 (886)
295 PLN03077 Protein ECB2; Provisi 96.9 0.045 9.7E-07 53.9 15.8 53 56-112 532-584 (857)
296 KOG1915 Cell cycle control pro 96.9 0.064 1.4E-06 47.7 14.6 98 13-111 403-500 (677)
297 PF10602 RPN7: 26S proteasome 96.9 0.029 6.3E-07 44.0 11.6 101 11-111 33-142 (177)
298 PF14853 Fis1_TPR_C: Fis1 C-te 96.9 0.0024 5.2E-08 39.1 4.3 33 83-115 2-34 (53)
299 KOG4367 Predicted Zn-finger pr 96.8 0.00044 9.5E-09 59.7 1.2 37 205-241 2-38 (699)
300 KOG1785 Tyrosine kinase negati 96.8 0.0004 8.6E-09 59.3 0.9 45 209-253 371-416 (563)
301 KOG4151 Myosin assembly protei 96.8 0.0047 1E-07 57.6 7.8 104 12-115 51-160 (748)
302 COG4976 Predicted methyltransf 96.8 0.0022 4.8E-08 51.4 4.6 57 25-81 6-62 (287)
303 KOG2610 Uncharacterized conser 96.8 0.015 3.3E-07 49.3 9.6 97 11-107 134-234 (491)
304 KOG2471 TPR repeat-containing 96.7 0.0029 6.3E-08 56.0 5.4 101 12-112 238-365 (696)
305 PF10300 DUF3808: Protein of u 96.7 0.073 1.6E-06 48.5 14.7 87 26-112 245-335 (468)
306 PF14561 TPR_20: Tetratricopep 96.7 0.025 5.4E-07 39.0 8.7 52 67-118 7-58 (90)
307 KOG3113 Uncharacterized conser 96.6 0.0012 2.5E-08 53.1 2.2 52 205-259 109-164 (293)
308 PF09986 DUF2225: Uncharacteri 96.6 0.038 8.2E-07 44.7 10.8 89 24-112 87-195 (214)
309 PF04184 ST7: ST7 protein; In 96.6 0.021 4.5E-07 51.0 9.8 57 52-108 263-321 (539)
310 KOG1585 Protein required for f 96.6 0.3 6.4E-06 40.0 15.4 99 15-113 32-141 (308)
311 smart00028 TPR Tetratricopepti 96.6 0.0041 8.8E-08 32.7 3.6 32 15-46 2-33 (34)
312 PF10579 Rapsyn_N: Rapsyn N-te 96.6 0.037 8.1E-07 36.6 8.4 66 12-77 4-72 (80)
313 TIGR02561 HrpB1_HrpK type III 96.5 0.064 1.4E-06 40.2 10.7 90 11-100 7-96 (153)
314 KOG1586 Protein required for f 96.5 0.34 7.4E-06 39.3 16.1 103 10-113 30-145 (288)
315 KOG2979 Protein involved in DN 96.4 0.003 6.5E-08 51.1 3.4 63 207-269 176-244 (262)
316 KOG2114 Vacuolar assembly/sort 96.4 0.069 1.5E-06 50.5 12.5 63 181-250 817-880 (933)
317 COG4976 Predicted methyltransf 96.4 0.0063 1.4E-07 48.8 4.9 58 57-114 4-61 (287)
318 KOG0883 Cyclophilin type, U bo 96.4 0.0028 6E-08 54.2 2.9 52 207-259 40-91 (518)
319 KOG4507 Uncharacterized conser 96.3 0.16 3.4E-06 46.5 13.6 111 6-117 205-318 (886)
320 KOG4172 Predicted E3 ubiquitin 96.3 0.00069 1.5E-08 40.7 -0.7 45 209-253 9-54 (62)
321 PF04184 ST7: ST7 protein; In 96.2 0.11 2.4E-06 46.6 12.1 93 20-114 174-291 (539)
322 KOG1039 Predicted E3 ubiquitin 96.2 0.0028 6.2E-08 54.4 2.2 49 205-253 159-221 (344)
323 KOG1001 Helicase-like transcri 96.1 0.001 2.2E-08 62.5 -1.0 47 208-255 455-502 (674)
324 KOG3800 Predicted E3 ubiquitin 96.1 0.0034 7.3E-08 51.7 2.1 45 209-253 2-51 (300)
325 KOG1070 rRNA processing protei 96.1 0.18 3.8E-06 50.6 13.7 99 16-114 1532-1632(1710)
326 COG2912 Uncharacterized conser 96.1 0.061 1.3E-06 44.5 9.3 69 49-117 182-250 (269)
327 PF14447 Prok-RING_4: Prokaryo 96.1 0.0054 1.2E-07 37.3 2.3 46 208-256 8-53 (55)
328 KOG0396 Uncharacterized conser 96.1 0.7 1.5E-05 39.8 15.6 49 207-255 330-381 (389)
329 KOG4185 Predicted E3 ubiquitin 96.0 0.0068 1.5E-07 51.7 3.8 63 208-270 4-77 (296)
330 KOG0804 Cytoplasmic Zn-finger 96.0 0.0022 4.7E-08 55.8 0.6 42 209-253 177-222 (493)
331 PF13281 DUF4071: Domain of un 96.0 0.55 1.2E-05 41.2 15.0 101 14-114 141-258 (374)
332 PF13374 TPR_10: Tetratricopep 95.9 0.019 4E-07 32.8 4.3 28 50-77 4-31 (42)
333 KOG2396 HAT (Half-A-TPR) repea 95.9 0.31 6.7E-06 43.8 13.3 86 32-117 89-175 (568)
334 KOG1070 rRNA processing protei 95.9 0.38 8.3E-06 48.3 15.0 106 6-111 1556-1663(1710)
335 COG5194 APC11 Component of SCF 95.9 0.0061 1.3E-07 39.8 2.1 44 209-253 33-81 (88)
336 COG2912 Uncharacterized conser 95.8 0.075 1.6E-06 44.0 8.7 77 15-91 182-258 (269)
337 KOG1645 RING-finger-containing 95.8 0.0046 1E-07 53.2 1.7 61 207-267 4-70 (463)
338 COG5109 Uncharacterized conser 95.8 0.47 1E-05 39.8 13.1 45 206-250 335-384 (396)
339 KOG2610 Uncharacterized conser 95.8 0.12 2.6E-06 44.1 9.9 98 17-114 106-207 (491)
340 KOG0828 Predicted E3 ubiquitin 95.7 0.0039 8.4E-08 54.9 1.0 34 221-254 602-635 (636)
341 KOG0827 Predicted E3 ubiquitin 95.7 0.0063 1.4E-07 52.0 2.2 51 205-255 2-58 (465)
342 KOG1734 Predicted RING-contain 95.7 0.0032 6.9E-08 51.1 0.3 63 198-260 215-288 (328)
343 PF12862 Apc5: Anaphase-promot 95.6 0.078 1.7E-06 36.8 7.2 35 83-117 42-76 (94)
344 KOG1571 Predicted E3 ubiquitin 95.6 0.0057 1.2E-07 52.0 1.6 50 200-253 298-347 (355)
345 PF13374 TPR_10: Tetratricopep 95.6 0.035 7.5E-07 31.6 4.5 30 14-43 2-31 (42)
346 KOG3364 Membrane protein invol 95.5 0.33 7.1E-06 35.9 9.8 68 48-115 32-104 (149)
347 PF02259 FAT: FAT domain; Int 95.4 0.28 6E-06 42.6 11.7 105 10-114 142-290 (352)
348 PF12862 Apc5: Anaphase-promot 95.4 0.09 1.9E-06 36.5 6.7 59 22-80 6-73 (94)
349 KOG2471 TPR repeat-containing 95.3 0.031 6.7E-07 49.8 5.1 80 16-95 285-382 (696)
350 PF14570 zf-RING_4: RING/Ubox 95.2 0.015 3.3E-07 34.5 2.1 43 210-252 1-47 (48)
351 PF10516 SHNi-TPR: SHNi-TPR; 95.2 0.045 9.8E-07 30.9 3.9 28 84-111 3-30 (38)
352 PF05290 Baculo_IE-1: Baculovi 95.2 0.16 3.4E-06 37.0 7.4 51 205-255 78-134 (140)
353 KOG0825 PHD Zn-finger protein 95.1 0.0035 7.5E-08 58.2 -1.4 48 206-254 122-172 (1134)
354 KOG3081 Vesicle coat complex C 95.1 0.4 8.6E-06 39.7 10.5 67 48-114 169-239 (299)
355 PF02891 zf-MIZ: MIZ/SP-RING z 95.1 0.018 3.9E-07 34.8 2.2 44 208-251 3-50 (50)
356 KOG3364 Membrane protein invol 95.1 0.42 9.1E-06 35.3 9.5 75 14-88 32-111 (149)
357 PF07079 DUF1347: Protein of u 95.1 1.6 3.4E-05 39.0 14.7 93 14-107 379-520 (549)
358 COG3898 Uncharacterized membra 95.1 0.47 1E-05 41.5 11.3 97 14-111 120-217 (531)
359 PF08424 NRDE-2: NRDE-2, neces 95.0 2.1 4.7E-05 36.9 17.2 111 3-113 8-133 (321)
360 PF10516 SHNi-TPR: SHNi-TPR; 94.9 0.062 1.3E-06 30.4 3.9 30 48-77 1-30 (38)
361 KOG4265 Predicted E3 ubiquitin 94.8 0.014 3.1E-07 49.6 1.5 48 206-254 289-337 (349)
362 PF09613 HrpB1_HrpK: Bacterial 94.8 0.12 2.5E-06 39.5 6.2 99 2-103 32-130 (160)
363 smart00744 RINGv The RING-vari 94.8 0.029 6.2E-07 33.8 2.4 40 210-249 2-49 (49)
364 COG3898 Uncharacterized membra 94.6 2.7 5.8E-05 37.0 14.6 97 17-114 191-295 (531)
365 COG3914 Spy Predicted O-linked 94.5 0.6 1.3E-05 42.8 11.0 96 20-115 73-175 (620)
366 PF08424 NRDE-2: NRDE-2, neces 94.4 2.5 5.4E-05 36.5 14.6 80 35-114 6-97 (321)
367 KOG4739 Uncharacterized protei 94.3 0.02 4.2E-07 46.2 1.2 49 209-260 5-55 (233)
368 PF09986 DUF2225: Uncharacteri 94.3 1.1 2.3E-05 36.3 11.2 72 9-80 113-197 (214)
369 PF08631 SPO22: Meiosis protei 94.3 2.9 6.3E-05 35.3 18.3 102 11-112 32-151 (278)
370 PRK15180 Vi polysaccharide bio 94.2 0.6 1.3E-05 41.9 10.0 93 22-114 297-423 (831)
371 PF07720 TPR_3: Tetratricopept 94.1 0.22 4.8E-06 27.7 4.9 30 16-45 3-34 (36)
372 KOG2047 mRNA splicing factor [ 94.1 4.5 9.7E-05 37.9 15.6 103 11-113 422-542 (835)
373 KOG3161 Predicted E3 ubiquitin 94.1 0.018 3.8E-07 52.6 0.5 64 203-267 7-76 (861)
374 PF02259 FAT: FAT domain; Int 94.0 3.6 7.9E-05 35.5 17.6 32 62-93 272-303 (352)
375 COG3629 DnrI DNA-binding trans 94.0 0.4 8.7E-06 40.3 8.4 64 48-111 153-216 (280)
376 PF12968 DUF3856: Domain of Un 93.9 0.48 1E-05 34.2 7.3 67 11-77 52-129 (144)
377 KOG3617 WD40 and TPR repeat-co 93.9 2.5 5.3E-05 40.8 13.8 96 16-111 860-996 (1416)
378 COG3947 Response regulator con 93.8 0.3 6.5E-06 40.9 7.1 61 49-109 280-340 (361)
379 PF10602 RPN7: 26S proteasome 93.8 2 4.3E-05 33.6 11.6 66 49-114 37-105 (177)
380 PF11793 FANCL_C: FANCL C-term 93.7 0.026 5.6E-07 36.8 0.7 48 207-254 2-67 (70)
381 PF07721 TPR_4: Tetratricopept 93.7 0.11 2.4E-06 26.5 2.9 22 84-105 3-24 (26)
382 PF07720 TPR_3: Tetratricopept 93.6 0.28 6E-06 27.3 4.7 31 50-80 3-35 (36)
383 PF10367 Vps39_2: Vacuolar sor 93.6 0.54 1.2E-05 33.3 7.6 36 200-235 71-108 (109)
384 COG0790 FOG: TPR repeat, SEL1 93.6 1.8 3.9E-05 36.6 12.1 97 13-111 108-220 (292)
385 COG3118 Thioredoxin domain-con 93.6 2 4.4E-05 36.2 11.7 104 3-106 157-296 (304)
386 COG5219 Uncharacterized conser 93.6 0.021 4.5E-07 54.5 0.1 50 204-253 1466-1523(1525)
387 PF10373 EST1_DNA_bind: Est1 D 93.5 0.49 1.1E-05 39.6 8.3 62 33-94 1-62 (278)
388 KOG2034 Vacuolar sorting prote 93.5 3 6.6E-05 40.2 13.8 38 202-239 812-851 (911)
389 KOG2396 HAT (Half-A-TPR) repea 93.4 0.56 1.2E-05 42.2 8.6 82 6-87 97-179 (568)
390 KOG1839 Uncharacterized protei 93.4 1.2 2.6E-05 44.6 11.5 104 9-112 968-1087(1236)
391 COG3629 DnrI DNA-binding trans 93.4 0.83 1.8E-05 38.4 9.2 68 10-77 149-216 (280)
392 KOG3002 Zn finger protein [Gen 93.3 0.093 2E-06 44.5 3.6 62 204-272 45-107 (299)
393 KOG0530 Protein farnesyltransf 93.2 1.8 4E-05 35.8 10.6 92 23-114 52-145 (318)
394 KOG2047 mRNA splicing factor [ 93.2 6.8 0.00015 36.8 15.2 101 14-114 477-582 (835)
395 COG5191 Uncharacterized conser 93.2 0.14 3.1E-06 43.1 4.4 78 9-86 102-180 (435)
396 KOG1550 Extracellular protein 93.1 1 2.3E-05 42.0 10.5 95 15-111 245-357 (552)
397 COG5627 MMS21 DNA repair prote 92.9 0.082 1.8E-06 42.3 2.5 59 207-265 189-251 (275)
398 cd02682 MIT_AAA_Arch MIT: doma 92.8 1.6 3.4E-05 28.8 8.0 30 13-42 5-34 (75)
399 PF07721 TPR_4: Tetratricopept 92.7 0.19 4.1E-06 25.6 3.0 23 50-72 3-25 (26)
400 PF14863 Alkyl_sulf_dimr: Alky 92.7 0.6 1.3E-05 35.0 6.8 52 48-99 70-121 (141)
401 PF11207 DUF2989: Protein of u 92.7 0.54 1.2E-05 37.3 6.7 78 25-104 117-200 (203)
402 TIGR02561 HrpB1_HrpK type III 92.6 0.3 6.5E-06 36.7 4.9 63 2-64 32-94 (153)
403 COG4455 ImpE Protein of avirul 92.5 1.4 3.1E-05 35.5 8.8 63 21-83 8-70 (273)
404 COG5191 Uncharacterized conser 92.3 0.27 5.8E-06 41.6 4.8 80 37-116 96-176 (435)
405 COG2909 MalT ATP-dependent tra 92.2 7.9 0.00017 37.6 14.8 94 13-106 457-563 (894)
406 KOG1585 Protein required for f 92.2 5.8 0.00013 32.7 14.9 98 14-111 71-179 (308)
407 PF07079 DUF1347: Protein of u 92.1 8.7 0.00019 34.6 15.2 145 15-160 7-156 (549)
408 KOG1493 Anaphase-promoting com 92.1 0.041 9E-07 35.7 -0.1 46 208-253 32-81 (84)
409 COG4455 ImpE Protein of avirul 92.0 1.8 3.9E-05 34.9 8.9 76 57-136 10-85 (273)
410 PF10255 Paf67: RNA polymerase 91.8 2.7 5.9E-05 37.3 10.8 60 51-111 125-193 (404)
411 KOG0530 Protein farnesyltransf 91.8 6.8 0.00015 32.6 14.6 86 29-114 93-179 (318)
412 KOG4362 Transcriptional regula 91.7 0.063 1.4E-06 50.0 0.6 65 207-271 21-87 (684)
413 PRK15180 Vi polysaccharide bio 91.7 0.55 1.2E-05 42.2 6.3 55 18-72 327-381 (831)
414 KOG4275 Predicted E3 ubiquitin 91.7 0.057 1.2E-06 44.6 0.3 43 205-252 298-341 (350)
415 KOG0686 COP9 signalosome, subu 91.7 1.7 3.7E-05 38.2 9.1 96 14-109 150-256 (466)
416 KOG1839 Uncharacterized protei 91.4 4.3 9.4E-05 40.9 12.5 101 12-112 930-1045(1236)
417 PF13281 DUF4071: Domain of un 91.4 9.6 0.00021 33.6 15.3 110 47-162 140-256 (374)
418 PF10952 DUF2753: Protein of u 91.2 1.3 2.8E-05 32.2 6.6 28 16-43 3-30 (140)
419 KOG1914 mRNA cleavage and poly 91.1 12 0.00027 34.4 14.3 73 4-77 10-82 (656)
420 KOG0298 DEAD box-containing he 90.9 0.051 1.1E-06 53.7 -0.9 43 207-250 1153-1196(1394)
421 KOG1814 Predicted E3 ubiquitin 90.8 0.22 4.9E-06 43.3 3.0 35 206-240 183-220 (445)
422 cd02682 MIT_AAA_Arch MIT: doma 90.6 0.8 1.7E-05 30.2 4.8 17 98-114 29-45 (75)
423 PF10373 EST1_DNA_bind: Est1 D 90.6 0.71 1.5E-05 38.6 5.9 45 67-111 1-45 (278)
424 PF11207 DUF2989: Protein of u 90.5 3 6.4E-05 33.2 8.7 54 60-115 119-173 (203)
425 PF14863 Alkyl_sulf_dimr: Alky 90.5 1.2 2.7E-05 33.3 6.4 50 14-63 70-119 (141)
426 PF04910 Tcf25: Transcriptiona 90.3 10 0.00022 33.4 12.9 73 42-114 34-135 (360)
427 KOG1550 Extracellular protein 90.3 4 8.7E-05 38.2 11.0 93 16-112 290-394 (552)
428 KOG2300 Uncharacterized conser 90.3 12 0.00025 34.1 13.0 97 12-112 365-475 (629)
429 PF10255 Paf67: RNA polymerase 90.1 5.6 0.00012 35.4 11.1 96 19-115 127-232 (404)
430 PF06416 DUF1076: Protein of u 90.1 0.41 8.9E-06 33.7 3.2 71 185-256 15-94 (113)
431 PF11817 Foie-gras_1: Foie gra 89.9 2.4 5.2E-05 35.1 8.4 62 48-109 178-245 (247)
432 KOG2930 SCF ubiquitin ligase, 89.9 0.17 3.7E-06 35.0 1.2 27 224-251 80-106 (114)
433 KOG2041 WD40 repeat protein [G 89.7 19 0.00042 34.3 18.1 30 9-38 847-876 (1189)
434 PRK13184 pknD serine/threonine 89.7 5.6 0.00012 39.5 11.7 98 20-118 481-588 (932)
435 KOG1310 WD40 repeat protein [G 89.6 1 2.2E-05 41.0 6.0 76 6-81 400-478 (758)
436 COG0790 FOG: TPR repeat, SEL1 89.5 11 0.00025 31.6 12.6 90 17-111 151-266 (292)
437 KOG0529 Protein geranylgeranyl 89.4 3.9 8.4E-05 36.1 9.3 88 27-114 88-181 (421)
438 KOG0546 HSP90 co-chaperone CPR 89.3 0.41 9E-06 41.1 3.4 76 16-91 277-352 (372)
439 COG3914 Spy Predicted O-linked 89.3 18 0.0004 33.6 14.5 91 25-115 41-135 (620)
440 TIGR03504 FimV_Cterm FimV C-te 89.3 0.79 1.7E-05 26.8 3.6 23 53-75 4-26 (44)
441 cd02683 MIT_1 MIT: domain cont 88.9 1.4 3E-05 29.3 5.1 15 100-114 31-45 (77)
442 KOG3617 WD40 and TPR repeat-co 88.9 21 0.00046 34.8 14.2 64 48-111 858-941 (1416)
443 PF04053 Coatomer_WDAD: Coatom 88.9 3.3 7.1E-05 37.5 9.0 80 14-106 347-426 (443)
444 PF08631 SPO22: Meiosis protei 88.8 5.5 0.00012 33.6 9.9 80 24-103 3-105 (278)
445 KOG2041 WD40 repeat protein [G 88.8 3.4 7.4E-05 39.1 8.9 85 10-106 792-876 (1189)
446 PF07191 zinc-ribbons_6: zinc- 88.6 0.12 2.6E-06 33.3 -0.2 40 208-253 2-41 (70)
447 PF10579 Rapsyn_N: Rapsyn N-te 88.5 5.5 0.00012 26.5 8.2 57 55-111 13-72 (80)
448 PF09670 Cas_Cas02710: CRISPR- 88.5 15 0.00032 32.7 12.7 64 14-77 131-198 (379)
449 COG2976 Uncharacterized protei 88.4 11 0.00024 29.9 14.4 58 51-108 92-152 (207)
450 PF11817 Foie-gras_1: Foie gra 88.1 5.2 0.00011 33.1 9.2 60 14-73 178-243 (247)
451 KOG1914 mRNA cleavage and poly 86.9 4.8 0.0001 36.9 8.5 73 38-111 10-82 (656)
452 PF04212 MIT: MIT (microtubule 86.7 2.1 4.6E-05 27.5 4.9 30 13-42 4-33 (69)
453 TIGR03504 FimV_Cterm FimV C-te 86.7 1.2 2.6E-05 26.1 3.2 27 85-111 2-28 (44)
454 smart00386 HAT HAT (Half-A-TPR 86.7 2.1 4.4E-05 22.3 4.2 28 28-55 1-28 (33)
455 COG3947 Response regulator con 86.6 3.3 7.2E-05 34.9 7.0 58 16-73 281-338 (361)
456 PF04910 Tcf25: Transcriptiona 86.6 22 0.00047 31.3 14.9 104 7-110 33-167 (360)
457 PF04781 DUF627: Protein of un 86.5 9.7 0.00021 27.2 10.6 61 54-114 2-76 (111)
458 COG5220 TFB3 Cdk activating ki 86.4 0.19 4.1E-06 40.4 -0.3 44 207-250 10-61 (314)
459 COG3813 Uncharacterized protei 86.3 0.68 1.5E-05 29.7 2.2 35 226-263 28-62 (84)
460 COG5175 MOT2 Transcriptional r 85.9 0.49 1.1E-05 40.1 1.8 48 206-255 14-66 (480)
461 KOG4814 Uncharacterized conser 85.6 14 0.00029 34.9 10.8 66 49-114 355-426 (872)
462 PF10272 Tmpp129: Putative tra 85.4 0.59 1.3E-05 40.6 2.2 35 223-257 304-355 (358)
463 cd02681 MIT_calpain7_1 MIT: do 85.4 2.7 5.8E-05 27.8 4.8 31 12-42 4-34 (76)
464 PF07219 HemY_N: HemY protein 84.8 6.9 0.00015 27.8 7.2 51 12-62 57-107 (108)
465 KOG2114 Vacuolar assembly/sort 84.4 40 0.00086 32.9 13.5 84 11-100 365-449 (933)
466 PF09205 DUF1955: Domain of un 84.0 8.9 0.00019 28.5 7.3 81 26-111 68-149 (161)
467 COG4941 Predicted RNA polymera 83.3 8.1 0.00018 33.3 7.9 85 29-114 311-397 (415)
468 PF05883 Baculo_RING: Baculovi 83.2 0.64 1.4E-05 34.2 1.2 44 207-251 26-78 (134)
469 cd02683 MIT_1 MIT: domain cont 83.1 11 0.00024 25.0 8.9 31 12-42 4-34 (77)
470 PF10345 Cohesin_load: Cohesin 83.1 43 0.00094 31.8 16.3 103 10-113 55-170 (608)
471 KOG0985 Vesicle coat protein c 82.9 18 0.00038 36.2 10.8 105 5-114 1030-1165(1666)
472 PF14353 CpXC: CpXC protein 82.6 0.85 1.8E-05 33.6 1.8 46 208-253 2-49 (128)
473 smart00386 HAT HAT (Half-A-TPR 82.5 3.9 8.5E-05 21.1 4.1 30 62-91 1-30 (33)
474 COG5236 Uncharacterized conser 82.1 0.83 1.8E-05 38.9 1.7 45 206-251 60-106 (493)
475 KOG0985 Vesicle coat protein c 81.6 12 0.00026 37.2 9.2 60 12-76 1102-1161(1666)
476 PF12854 PPR_1: PPR repeat 81.2 4.1 8.8E-05 22.1 3.8 27 47-73 6-32 (34)
477 KOG2581 26S proteasome regulat 80.9 41 0.00088 30.0 15.8 101 14-114 169-279 (493)
478 KOG2561 Adaptor protein NUB1, 80.9 16 0.00034 32.8 9.0 98 14-111 163-296 (568)
479 PF03854 zf-P11: P-11 zinc fin 80.8 0.55 1.2E-05 27.6 0.2 32 222-254 16-47 (50)
480 PF04212 MIT: MIT (microtubule 80.8 2.6 5.5E-05 27.2 3.4 16 95-110 18-33 (69)
481 PHA02537 M terminase endonucle 80.7 6.2 0.00013 32.2 6.2 91 25-117 94-213 (230)
482 PRK06266 transcription initiat 80.7 6.8 0.00015 30.7 6.3 56 201-272 111-167 (178)
483 cd02680 MIT_calpain7_2 MIT: do 80.7 4.3 9.3E-05 26.8 4.3 9 63-71 21-29 (75)
484 PF05605 zf-Di19: Drought indu 80.6 4.2 9E-05 24.8 4.1 32 207-250 2-39 (54)
485 KOG0890 Protein kinase of the 80.6 97 0.0021 34.1 15.9 112 10-123 1666-1796(2382)
486 KOG3899 Uncharacterized conser 80.4 0.63 1.4E-05 38.6 0.4 30 228-257 328-369 (381)
487 KOG1940 Zn-finger protein [Gen 80.3 0.97 2.1E-05 37.8 1.5 43 207-250 158-204 (276)
488 KOG0314 Predicted E3 ubiquitin 79.9 1.3 2.8E-05 39.6 2.2 69 202-272 214-286 (448)
489 COG2909 MalT ATP-dependent tra 79.3 67 0.0015 31.6 16.8 102 13-114 414-529 (894)
490 smart00745 MIT Microtubule Int 79.2 5.1 0.00011 26.3 4.5 14 65-78 6-19 (77)
491 PF13041 PPR_2: PPR repeat fam 78.7 11 0.00024 22.1 5.9 27 50-76 5-31 (50)
492 PF06957 COPI_C: Coatomer (COP 78.4 28 0.0006 31.3 9.9 61 85-145 207-268 (422)
493 cd02678 MIT_VPS4 MIT: domain c 78.2 6.5 0.00014 25.8 4.7 29 14-42 6-34 (75)
494 cd02680 MIT_calpain7_2 MIT: do 78.2 5.5 0.00012 26.3 4.3 32 12-43 4-35 (75)
495 COG1675 TFA1 Transcription ini 78.0 7.6 0.00016 30.3 5.6 52 204-271 110-162 (176)
496 KOG1812 Predicted E3 ubiquitin 78.0 2.8 6.1E-05 37.2 3.7 66 207-273 146-225 (384)
497 PF09205 DUF1955: Domain of un 77.7 25 0.00054 26.2 7.8 63 16-78 87-150 (161)
498 PF10345 Cohesin_load: Cohesin 77.5 29 0.00062 33.0 10.6 96 14-109 301-431 (608)
499 KOG2300 Uncharacterized conser 77.2 59 0.0013 29.8 15.6 138 15-161 324-474 (629)
500 smart00745 MIT Microtubule Int 76.8 7.4 0.00016 25.5 4.8 30 13-42 7-36 (77)
No 1
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-41 Score=260.44 Aligned_cols=268 Identities=46% Similarity=0.737 Sum_probs=245.5
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHH
Q 023501 11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQ 90 (281)
Q Consensus 11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~ 90 (281)
+..+..+++.|+.+|..++|..||..|.+||.++|..+.+|.|+|.||+++++|+.+..++++|++++|+..+++|.+|.
T Consensus 7 s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~ 86 (284)
T KOG4642|consen 7 SESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQ 86 (284)
T ss_pred chHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--
Q 023501 91 TLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHVLDIS-- 168 (281)
Q Consensus 91 ~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 168 (281)
.+++...|++|+..+.+++.+....... +...+...|..++...|.....+|..+..++..++..+++..+.++.+
T Consensus 87 ~~l~s~~~~eaI~~Lqra~sl~r~~~~~--~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~El~~yl~slie~~~~~~~s~~ 164 (284)
T KOG4642|consen 87 WLLQSKGYDEAIKVLQRAYSLLREQPFT--FGDDIPKALRDAKKKRWEVSEEKRIRQELELHSYLESLIEGDRERELSEW 164 (284)
T ss_pred HHHhhccccHHHHHHHHHHHHHhcCCCC--CcchHHHHHHHHHhCccchhHHHHHHHHhhHHHHHHHHhccchhhHHHHH
Confidence 9999999999999999998886553333 566899999999999999999999999999999999999988666655
Q ss_pred hhccchhh--------hhhHHHHHHHHHHHHHHHhcCcCCCCCCCCcccccCCcccccCceecCCCcccccchHHhHhcc
Q 023501 169 RKEGFLDE--------ASSTHLKQMEALRQVFRKAAEDDTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDK 240 (281)
Q Consensus 169 ~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~ 240 (281)
..+++.+. +.......+..+.++|+.+.....++++|+.++|.|+.++|.+||++|+|-||.+.-|++++..
T Consensus 165 ~~N~~sde~~k~~q~~~~~~~d~~~kel~elf~~v~e~rk~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~r 244 (284)
T KOG4642|consen 165 QENGESDEHLKTMQVPIEQDHDHTTKELSELFSKVDEKRKKREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQR 244 (284)
T ss_pred HHcCCChHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHH
Confidence 23433332 4467778888999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcCCCCCcccHHHHHHHHHHHHHcCCCccC
Q 023501 241 VGKFDPITREPLRESQLVPNLAIKEAVRAYMDKHGWAYKA 280 (281)
Q Consensus 241 ~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~~~~~~~~~~~ 280 (281)
.++++|++|.++++.+++||+.|+..|..|++.|+|+.+|
T Consensus 245 vghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w~~~~ 284 (284)
T KOG4642|consen 245 VGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEWADDY 284 (284)
T ss_pred hccCCchhcccCCHHhhccchHHHHHHHHHHHhccccccC
Confidence 8889999999999999999999999999999999999886
No 2
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.90 E-value=2e-24 Score=143.58 Aligned_cols=73 Identities=47% Similarity=0.784 Sum_probs=63.9
Q ss_pred CCCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHHHHHcCC
Q 023501 204 VPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMDKHGW 276 (281)
Q Consensus 204 ~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~~~~~~~ 276 (281)
+|+.|.||||+.+|.|||++|+||+||++||++|+..+..+||+|+++++..+++||..|+..|++|+.+|+|
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~~ 73 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENKK 73 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCTC
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHccC
Confidence 5899999999999999999999999999999999998555799999999999999999999999999999987
No 3
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.87 E-value=2.2e-21 Score=157.58 Aligned_cols=106 Identities=32% Similarity=0.485 Sum_probs=103.2
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHH
Q 023501 10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLG 89 (281)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la 89 (281)
+...|+.++..|+.+++.++|++|+..|++||.++|+|+++|.|||.+|.++|.|+.|+++|+.||.+||.+.++|.++|
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG 156 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLG 156 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcChHHHHHHHHHHHhhccCC
Q 023501 90 QTLLQRNEYADGIKELEKALNLGRGA 115 (281)
Q Consensus 90 ~~~~~~g~~~~A~~~~~kal~~~p~~ 115 (281)
.+|+.+|++++|++.|.|+|.++|++
T Consensus 157 ~A~~~~gk~~~A~~aykKaLeldP~N 182 (304)
T KOG0553|consen 157 LAYLALGKYEEAIEAYKKALELDPDN 182 (304)
T ss_pred HHHHccCcHHHHHHHHHhhhccCCCc
Confidence 99999999999999999999999983
No 4
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.76 E-value=6.7e-19 Score=114.37 Aligned_cols=63 Identities=46% Similarity=0.829 Sum_probs=59.1
Q ss_pred cccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHH
Q 023501 207 YLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAY 270 (281)
Q Consensus 207 ~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~ 270 (281)
+|.||||+++|.+||+++|||+||+.||.+|+..++ .||+|+.+++..++++|..|++.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~-~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHG-TDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCC-CCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 478999999999999999999999999999998755 699999999999999999999999976
No 5
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.76 E-value=3.3e-17 Score=124.47 Aligned_cols=113 Identities=14% Similarity=0.093 Sum_probs=104.7
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501 2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS 81 (281)
Q Consensus 2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 81 (281)
+++.++..+|+. +..+|..+++.|+|++|+.+|.+++..+|.++.+|.++|.++..+|++++|+..++++++++|.+
T Consensus 15 ~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~ 91 (144)
T PRK15359 15 ILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASH 91 (144)
T ss_pred HHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 456667766665 66789999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501 82 VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP 117 (281)
Q Consensus 82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~ 117 (281)
+.+++.+|.++..+|++++|+..|.+++.++|+...
T Consensus 92 ~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~ 127 (144)
T PRK15359 92 PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADAS 127 (144)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 999999999999999999999999999999887443
No 6
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=3.6e-17 Score=141.96 Aligned_cols=119 Identities=29% Similarity=0.406 Sum_probs=108.6
Q ss_pred chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHH
Q 023501 9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLL 88 (281)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (281)
.+|+.+...+..|+.+|+.|+|..|+.+|++||..+|+|+.+|+|||.||.++|++..|++|++.+++++|++.++|++.
T Consensus 353 ~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RK 432 (539)
T KOG0548|consen 353 INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRK 432 (539)
T ss_pred hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 35777888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHH
Q 023501 89 GQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKY 134 (281)
Q Consensus 89 a~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~ 134 (281)
|.++..+.+|++|.+.|.++++++|+ ...+...+.++..
T Consensus 433 g~al~~mk~ydkAleay~eale~dp~-------~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 433 GAALRAMKEYDKALEAYQEALELDPS-------NAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCch-------hHHHHHHHHHHHH
Confidence 99999999999999999999999876 3344455555443
No 7
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.73 E-value=3.5e-16 Score=120.17 Aligned_cols=104 Identities=27% Similarity=0.489 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHH
Q 023501 11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN-----VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGH 85 (281)
Q Consensus 11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~ 85 (281)
...+..++..|+.+|+.|+|++|...|+.||++.|. .+.+|.|+|.|.++++.|+.|+.+|.+||+++|.+.+|+
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl 171 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKAL 171 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHH
Confidence 456788999999999999999999999999999987 468999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 86 YLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 86 ~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
.++|.+|.++.+|++|+..|.+.+.++|.
T Consensus 172 ~RRAeayek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 172 ERRAEAYEKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCcc
Confidence 99999999999999999999999999887
No 8
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.69 E-value=2.2e-15 Score=113.14 Aligned_cols=106 Identities=12% Similarity=0.161 Sum_probs=101.8
Q ss_pred hch-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHH
Q 023501 8 AGV-AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHY 86 (281)
Q Consensus 8 ~~~-~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~ 86 (281)
..+ ++..+.++..|..++..|++++|...|+-+..++|.++..|+++|.|+..+|+|++|+..|.+|+.++|+++.+++
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 345 6788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHhhcc
Q 023501 87 LLGQTLLQRNEYADGIKELEKALNLGR 113 (281)
Q Consensus 87 ~la~~~~~~g~~~~A~~~~~kal~~~p 113 (281)
++|.+++.+|+.+.|.+.|+.++..+.
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999974
No 9
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.68 E-value=2.5e-15 Score=112.95 Aligned_cols=114 Identities=20% Similarity=0.266 Sum_probs=109.8
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501 2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS 81 (281)
Q Consensus 2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 81 (281)
.++.++..+|+.+.....+|..++..|++++|+..|++++..+|.++.++.++|.++..+|++++|+..++++++++|.+
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 46778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501 82 VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGA 115 (281)
Q Consensus 82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~ 115 (281)
+..++.+|.++...|++++|+..|+++++++|+.
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999998873
No 10
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=5e-15 Score=125.47 Aligned_cols=119 Identities=27% Similarity=0.410 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---------------chHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 023501 11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN---------------VPIYWTNRALCHLKRNDWTKVEADCRKAI 75 (281)
Q Consensus 11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al 75 (281)
-+.|...+..|+.+|+.|+|..|+..|.+|+..-.. -..++.|+|.||.++++|..|+..|+++|
T Consensus 205 l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL 284 (397)
T KOG0543|consen 205 LEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL 284 (397)
T ss_pred HHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 356788999999999999999999999999877442 13689999999999999999999999999
Q ss_pred hhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHH
Q 023501 76 QLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLL 136 (281)
Q Consensus 76 ~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~ 136 (281)
+++|+|.+|+|+.|.++..+|+|+.|...|++++++.|++ ..+..++..+...+
T Consensus 285 e~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N-------ka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 285 ELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN-------KAARAELIKLKQKI 338 (397)
T ss_pred hcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998883 24555555554433
No 11
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.65 E-value=5.4e-15 Score=118.22 Aligned_cols=112 Identities=24% Similarity=0.357 Sum_probs=105.9
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHH-HHhcC--HHHHHHHHHHHHhhcC
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCH-LKRND--WTKVEADCRKAIQLDH 79 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~-~~~~~--~~~A~~~~~~al~l~p 79 (281)
++.++..+|++++.|..+|..+...|++++|+..|.+++.++|+++.++.++|.++ ...|+ +++|...++++++++|
T Consensus 62 l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP 141 (198)
T PRK10370 62 LQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA 141 (198)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC
Confidence 45677788999999999999999999999999999999999999999999999985 67787 5999999999999999
Q ss_pred cchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 80 DSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 80 ~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
+++.+++.+|.++...|++++|+..|++++++.|.
T Consensus 142 ~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 142 NEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999876
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.65 E-value=1.3e-15 Score=134.35 Aligned_cols=132 Identities=17% Similarity=0.168 Sum_probs=102.0
Q ss_pred hhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchh
Q 023501 4 EAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVK 83 (281)
Q Consensus 4 ~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 83 (281)
+++...+|..+.++.++|++|-..+.|+.|+.+|.+|+.+.|+.+.++.|+|.+|+..|..+-|+..|++||.++|+++.
T Consensus 242 ~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~ 321 (966)
T KOG4626|consen 242 EEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPD 321 (966)
T ss_pred HHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchH
Confidence 45677778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHH
Q 023501 84 GHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYL 135 (281)
Q Consensus 84 a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~ 135 (281)
++.++|.++...|+..+|+.+|.+++.++|...+.-+.+..+..+.++.+.+
T Consensus 322 Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A 373 (966)
T KOG4626|consen 322 AYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEA 373 (966)
T ss_pred HHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHH
Confidence 8888888888888888888888888888777666555555555555544433
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.65 E-value=2.1e-15 Score=133.06 Aligned_cols=161 Identities=16% Similarity=0.131 Sum_probs=118.9
Q ss_pred hhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchh
Q 023501 4 EAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVK 83 (281)
Q Consensus 4 ~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 83 (281)
..+....|..|.++-++|.+|+.+|..+-||..|.+||+++|+.+.+|.|+|+++...|+..+|...|.+|+.+.|+++.
T Consensus 276 ~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~had 355 (966)
T KOG4626|consen 276 LRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHAD 355 (966)
T ss_pred HHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHH
Confidence 45666677788888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHH------------------HH
Q 023501 84 GHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSK------------------RS 145 (281)
Q Consensus 84 a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------------------~~ 145 (281)
+.+++|.++..+|.+++|...|.+++...|+.......+..+.+..+....++...++.. ..
T Consensus 356 am~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 356 AMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHh
Confidence 888888888888888888888888888877765555556666665555555444443333 33
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 023501 146 WELQSLKEACEAALEEKHV 164 (281)
Q Consensus 146 ~~~~~~~~~~~~~l~~~~~ 164 (281)
++...+.....+++..+|.
T Consensus 436 g~v~~A~q~y~rAI~~nPt 454 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQINPT 454 (966)
T ss_pred hhHHHHHHHHHHHHhcCcH
Confidence 5566666666666665554
No 14
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.64 E-value=6.4e-15 Score=128.31 Aligned_cols=100 Identities=32% Similarity=0.459 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHH
Q 023501 15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQ 94 (281)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~ 94 (281)
..+...|..++..|+|++|+.+|++|+.++|+++.+|.++|.+|..+|++++|+.++++|+.++|.++.+|+++|.++..
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 34778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcChHHHHHHHHHHHhhccC
Q 023501 95 RNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 95 ~g~~~~A~~~~~kal~~~p~ 114 (281)
+|+|++|+..|++++.++|+
T Consensus 83 lg~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPG 102 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999887
No 15
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=4.3e-15 Score=127.82 Aligned_cols=101 Identities=36% Similarity=0.636 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHH
Q 023501 11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQ 90 (281)
Q Consensus 11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~ 90 (281)
.+.|..++.+||.+|+.|+|++||++|++||++.|+.+.+|.||+.||..+|+|++.++++.+|++++|++.+++++++.
T Consensus 112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRAS 191 (606)
T ss_pred HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcChHHHHHHHHHHHhhc
Q 023501 91 TLLQRNEYADGIKELEKALNLG 112 (281)
Q Consensus 91 ~~~~~g~~~~A~~~~~kal~~~ 112 (281)
++..+|++++|+.... ++-+.
T Consensus 192 A~E~lg~~~eal~D~t-v~ci~ 212 (606)
T KOG0547|consen 192 AHEQLGKFDEALFDVT-VLCIL 212 (606)
T ss_pred HHHhhccHHHHHHhhh-HHHHh
Confidence 9999999999998875 44443
No 16
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.9e-15 Score=131.40 Aligned_cols=101 Identities=28% Similarity=0.399 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHH
Q 023501 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLL 93 (281)
Q Consensus 14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~ 93 (281)
+..++..|+..|..|+|+.|+.+|+.||.++|.++..|+||+.||..+|+|++|+.+..+.++++|.|+++|.++|.++.
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~ 81 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALF 81 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcChHHHHHHHHHHHhhccC
Q 023501 94 QRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 94 ~~g~~~~A~~~~~kal~~~p~ 114 (281)
.+|+|++|+..|.+.|+.+|+
T Consensus 82 ~lg~~~eA~~ay~~GL~~d~~ 102 (539)
T KOG0548|consen 82 GLGDYEEAILAYSEGLEKDPS 102 (539)
T ss_pred hcccHHHHHHHHHHHhhcCCc
Confidence 999999999999999999887
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.62 E-value=3.3e-14 Score=133.01 Aligned_cols=102 Identities=27% Similarity=0.358 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHH
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQT 91 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~ 91 (281)
..+..+..+|..++..|++++|+..|++++.++|+++..|.++|.++..+|++++|+..++++++++|+++.+++.+|.+
T Consensus 329 ~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~ 408 (615)
T TIGR00990 329 KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQL 408 (615)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHhcChHHHHHHHHHHHhhcc
Q 023501 92 LLQRNEYADGIKELEKALNLGR 113 (281)
Q Consensus 92 ~~~~g~~~~A~~~~~kal~~~p 113 (281)
+..+|++++|+..|++++.++|
T Consensus 409 ~~~~g~~~~A~~~~~kal~l~P 430 (615)
T TIGR00990 409 HFIKGEFAQAGKDYQKSIDLDP 430 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcCc
Confidence 4444444444444444444433
No 18
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.59 E-value=4.1e-14 Score=120.52 Aligned_cols=106 Identities=13% Similarity=0.103 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHH
Q 023501 10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLG 89 (281)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la 89 (281)
++..+..+..+|..+...|++.+|+..|++++.++|+++.+|.++|.++..+|++++|+..++++++++|++..+++.+|
T Consensus 60 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg 139 (296)
T PRK11189 60 DEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRG 139 (296)
T ss_pred cHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcChHHHHHHHHHHHhhccCC
Q 023501 90 QTLLQRNEYADGIKELEKALNLGRGA 115 (281)
Q Consensus 90 ~~~~~~g~~~~A~~~~~kal~~~p~~ 115 (281)
.++...|++++|+..++++++++|+.
T Consensus 140 ~~l~~~g~~~eA~~~~~~al~~~P~~ 165 (296)
T PRK11189 140 IALYYGGRYELAQDDLLAFYQDDPND 165 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999998873
No 19
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.58 E-value=7e-15 Score=121.72 Aligned_cols=103 Identities=35% Similarity=0.525 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHH
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQT 91 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~ 91 (281)
+.+-.+++.|+.||++|.|++||.+|++++...|.++.++.|||.+|+++..|..|..+|+.|+.+|..+.++|-++|.+
T Consensus 95 ~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 95 KKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQA 174 (536)
T ss_pred HhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 33445899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcChHHHHHHHHHHHhhccC
Q 023501 92 LLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 92 ~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
-..+|...+|.+.++.+|.+.|+
T Consensus 175 R~~Lg~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 175 RESLGNNMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHhhHHHHHHhHHHHHhhCcc
Confidence 99999999999999999999887
No 20
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=1.1e-14 Score=129.53 Aligned_cols=133 Identities=19% Similarity=0.213 Sum_probs=115.1
Q ss_pred hhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchh
Q 023501 4 EAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVK 83 (281)
Q Consensus 4 ~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 83 (281)
...++.++..++.|-..|+.+--+++++.||++|.+|+.++|+.+.+|..+|.=+....+|+.|...|+.|+..+|.+..
T Consensus 411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYn 490 (638)
T KOG1126|consen 411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYN 490 (638)
T ss_pred HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhH
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHH
Q 023501 84 GHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLL 136 (281)
Q Consensus 84 a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~ 136 (281)
|||-+|.+|.++++++.|.-.|++|+.++|.+..-......++..+++.++++
T Consensus 491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL 543 (638)
T KOG1126|consen 491 AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKAL 543 (638)
T ss_pred HHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHH
Confidence 99999999999999999999999999998875443223333444444443333
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.56 E-value=2.6e-13 Score=127.06 Aligned_cols=146 Identities=16% Similarity=0.184 Sum_probs=125.3
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV 82 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 82 (281)
++.++...|..+..+..+|..++..|++++|+..|.++++.+|+++.++.++|.+++.+|++++|+.+++++++++|++.
T Consensus 354 ~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~ 433 (615)
T TIGR00990 354 LSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI 433 (615)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH
Confidence 45566677888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023501 83 KGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEK 162 (281)
Q Consensus 83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (281)
.+++.+|.++..+|++++|+..|.+++...|.... .....+......+++.++...+.++++..
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~----------------~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPD----------------VYNYYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH----------------HHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999998776322 12233445556788888999999988865
Q ss_pred hh
Q 023501 163 HV 164 (281)
Q Consensus 163 ~~ 164 (281)
+.
T Consensus 498 p~ 499 (615)
T TIGR00990 498 KE 499 (615)
T ss_pred Cc
Confidence 43
No 22
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=5.6e-13 Score=109.96 Aligned_cols=104 Identities=27% Similarity=0.448 Sum_probs=97.5
Q ss_pred chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhH
Q 023501 9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN----VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKG 84 (281)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a 84 (281)
.+-+.|+.++..||.||+.++|..|+..|+++|..... ++.+|.|||.|.+-+|+|..|+.||.+|++++|.+.++
T Consensus 76 ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka 155 (390)
T KOG0551|consen 76 EPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKA 155 (390)
T ss_pred ChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh
Confidence 34568999999999999999999999999999998544 57899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhhc
Q 023501 85 HYLLGQTLLQRNEYADGIKELEKALNLG 112 (281)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~kal~~~ 112 (281)
+++-|.+++.+.++.+|+.+++..+.++
T Consensus 156 ~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 156 YIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 9999999999999999999999988774
No 23
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=8.5e-13 Score=113.88 Aligned_cols=124 Identities=17% Similarity=0.174 Sum_probs=73.4
Q ss_pred hhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchh
Q 023501 4 EAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVK 83 (281)
Q Consensus 4 ~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 83 (281)
+.++..++.....+..+|..|...++-++-...|.+|.+++|.++.+|+.||+.++-+++|++|+.+|++++.++|.++-
T Consensus 350 ~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~ 429 (606)
T KOG0547|consen 350 DAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAY 429 (606)
T ss_pred HHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhH
Confidence 34444445545556666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHH
Q 023501 84 GHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQ 127 (281)
Q Consensus 84 a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~ 127 (281)
+|..++-+++.+++++++...|+.+..--|.-.....+..++..
T Consensus 430 ~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLt 473 (606)
T KOG0547|consen 430 AYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILT 473 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHh
Confidence 66666666666666655555555555555543333334444443
No 24
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.53 E-value=8e-13 Score=109.66 Aligned_cols=151 Identities=18% Similarity=0.124 Sum_probs=123.4
Q ss_pred chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHH
Q 023501 9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLL 88 (281)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (281)
.++..++.+.++|..++..|.+.+|+..|..|++.+|++..+++.||.+|+.+|+-..|+.++.+++++.|++.-|...+
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR 112 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR 112 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhh
Q 023501 89 GQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWE---QESSKRSWELQSLKEACEAALEEKH 163 (281)
Q Consensus 89 a~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (281)
|.+++.+|++++|...|.+++..+|+++. ..+.+..+..+...... .....-.+....+...+..+|+..+
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~----~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~ 186 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGL----VLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP 186 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcch----hHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc
Confidence 99999999999999999999999886544 23444444443333222 2222223456666666666666544
No 25
>PRK12370 invasion protein regulator; Provisional
Probab=99.52 E-value=5.8e-13 Score=122.91 Aligned_cols=115 Identities=15% Similarity=0.111 Sum_probs=105.7
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHH
Q 023501 2 VLEAGLAGVAKQAEQLRLDGNYYFSK---------DRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCR 72 (281)
Q Consensus 2 ~l~~~~~~~~~~a~~~~~~g~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~ 72 (281)
++++++..+|+.+..+..+|..++.. +++++|+..+++|++++|+++.++..+|.++...|++++|+..++
T Consensus 283 ~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~ 362 (553)
T PRK12370 283 LLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFK 362 (553)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 46678888899999999998877633 458999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCC
Q 023501 73 KAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAK 116 (281)
Q Consensus 73 ~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~ 116 (281)
+|++++|+++.+++.+|.++...|++++|+..+++++.++|...
T Consensus 363 ~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~ 406 (553)
T PRK12370 363 QANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA 406 (553)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh
Confidence 99999999999999999999999999999999999999988743
No 26
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.51 E-value=1.1e-12 Score=103.30 Aligned_cols=142 Identities=16% Similarity=0.087 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHH
Q 023501 11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQ 90 (281)
Q Consensus 11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~ 90 (281)
...+.+...+|..|+..|++..|..-+++||+.+|++..+|..||..|.+.|+.+.|-+.|++|++++|++...+.+.|-
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~ 111 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhH
Confidence 45577888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023501 91 TLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHVLD 166 (281)
Q Consensus 91 ~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 166 (281)
-++.+|++++|.+.|++|+.. |.-+ ...... .+.+-...+.++.+.+..++.++|+.++...
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~-P~Y~----~~s~t~---------eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~ 173 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALAD-PAYG----EPSDTL---------ENLGLCALKAGQFDQAEEYLKRALELDPQFP 173 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhC-CCCC----Ccchhh---------hhhHHHHhhcCCchhHHHHHHHHHHhCcCCC
Confidence 999999999999999999876 3211 112222 2333344555666667777777776665533
No 27
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=3.8e-12 Score=109.28 Aligned_cols=144 Identities=18% Similarity=0.146 Sum_probs=120.5
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501 2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS 81 (281)
Q Consensus 2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 81 (281)
....+.+.+|+-..+|..+|..|..-++-..|+..|+.|++++|.|..+|+++|++|--++...=|+-++++|+++.|++
T Consensus 352 YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnD 431 (559)
T KOG1155|consen 352 YFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPND 431 (559)
T ss_pred HHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCc
Confidence 35567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 82 VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEE 161 (281)
Q Consensus 82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (281)
...|..+|++|.++++.++|+..|.+++....-++ .+.-. .++-.++.++.+++..+..+.++.
T Consensus 432 sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~-------~~l~~---------LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 432 SRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG-------SALVR---------LAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHhccccch-------HHHHH---------HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998832211 22222 223334445556666666666553
No 28
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.49 E-value=1.3e-13 Score=91.10 Aligned_cols=67 Identities=33% Similarity=0.457 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcC
Q 023501 13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRN-DWTKVEADCRKAIQLDH 79 (281)
Q Consensus 13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~p 79 (281)
+|..+..+|..++..|+|++|+.+|+++++.+|+++.+++++|.||..+| ++++|+.++++|++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 47788888888888888888888888888888888888888888888888 68888888888888887
No 29
>PRK12370 invasion protein regulator; Provisional
Probab=99.49 E-value=7.7e-13 Score=122.12 Aligned_cols=110 Identities=10% Similarity=-0.048 Sum_probs=103.9
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV 82 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 82 (281)
+++++..+|+.+..+..+|..+...|++++|+..|++|++++|+++.+++++|.++...|++++|+..++++++++|.++
T Consensus 327 ~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~ 406 (553)
T PRK12370 327 AIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA 406 (553)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh
Confidence 45677788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHHhhc
Q 023501 83 KGHYLLGQTLLQRNEYADGIKELEKALNLG 112 (281)
Q Consensus 83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~ 112 (281)
.+++.++.+++..|++++|+..+++++...
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~ 436 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQH 436 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHhc
Confidence 888888888999999999999999999875
No 30
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=3e-13 Score=114.42 Aligned_cols=105 Identities=25% Similarity=0.450 Sum_probs=99.0
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHH
Q 023501 10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN----VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGH 85 (281)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~ 85 (281)
.++.-+.++..|+..|+.|+|..|.+.|+.||.++|+ ++.+|.|||.+...+|+..+|+.+|+.|++|||...+++
T Consensus 245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikal 324 (486)
T KOG0550|consen 245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKAL 324 (486)
T ss_pred hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHH
Confidence 4566788999999999999999999999999999998 478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 86 YLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 86 ~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
.+.|.++..+++|++|++.|++++++..+
T Consensus 325 l~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 325 LRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999998433
No 31
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=1.3e-13 Score=122.82 Aligned_cols=134 Identities=16% Similarity=0.171 Sum_probs=119.4
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501 2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS 81 (281)
Q Consensus 2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 81 (281)
..++|++.+|..+-++-.+|..+....+|+.|..+|+.|+..+|.+..+|+++|.+|+++++++.|.-.+++|++++|.+
T Consensus 443 ~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~n 522 (638)
T KOG1126|consen 443 CFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSN 522 (638)
T ss_pred HHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccc
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHH
Q 023501 82 VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYL 135 (281)
Q Consensus 82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~ 135 (281)
......+|.++.++|+.++|+..|++|+.++|.+....+....+...+.+-.+.
T Consensus 523 svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~ea 576 (638)
T KOG1126|consen 523 SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEA 576 (638)
T ss_pred hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHH
Confidence 999999999999999999999999999999998666544444444444444333
No 32
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.46 E-value=4.4e-12 Score=119.17 Aligned_cols=108 Identities=16% Similarity=0.076 Sum_probs=64.9
Q ss_pred hhchHHHHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501 7 LAGVAKQAEQLRLDGNYYFSKDRYGA----AIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV 82 (281)
Q Consensus 7 ~~~~~~~a~~~~~~g~~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 82 (281)
....|+.+..+..+|..++..|++++ |+..|++++..+|+++.++.++|.++...|++++|+..+++++.++|+++
T Consensus 239 l~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~ 318 (656)
T PRK15174 239 LARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLP 318 (656)
T ss_pred HhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 33444555555556666666666654 56666666666666666666666666666666666666666666666666
Q ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 83 KGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
.++..+|.++..+|++++|+..|.+++...|.
T Consensus 319 ~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~ 350 (656)
T PRK15174 319 YVRAMYARALRQVGQYTAASDEFVQLAREKGV 350 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 66666666666666666666666666655443
No 33
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.46 E-value=3.9e-13 Score=118.04 Aligned_cols=130 Identities=23% Similarity=0.340 Sum_probs=111.7
Q ss_pred hhhhhhhchH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc
Q 023501 2 VLEAGLAGVA-KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80 (281)
Q Consensus 2 ~l~~~~~~~~-~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~ 80 (281)
+|+.+...+. ..+++..-+|..|+..|+|+.|+.+|+.||...|+|..+|..+|..+....+.++|+..|++|++|.|.
T Consensus 417 fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~ 496 (579)
T KOG1125|consen 417 FLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG 496 (579)
T ss_pred HHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC
Confidence 4455544332 678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcch---HHHHHHHHHH
Q 023501 81 SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYI---VEDIWQELAR 131 (281)
Q Consensus 81 ~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~---~~~~~~~l~~ 131 (281)
++++.|++|..++.+|.|++|+.+|..||.+.+.+...... .+.++..|+.
T Consensus 497 yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~ 550 (579)
T KOG1125|consen 497 YVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRL 550 (579)
T ss_pred eeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHH
Confidence 99999999999999999999999999999998763332111 2445555553
No 34
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.45 E-value=2.8e-12 Score=123.96 Aligned_cols=114 Identities=14% Similarity=0.032 Sum_probs=103.0
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV 82 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 82 (281)
++.++...|+ +..+..+|..+.+.|++++|+..|.+++..+|+++.++.++|.++...|++++|+..+++|++++|+++
T Consensus 599 ~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~ 677 (987)
T PRK09782 599 LTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDP 677 (987)
T ss_pred HHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 3455665665 788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501 83 KGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP 117 (281)
Q Consensus 83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~ 117 (281)
.+++.+|.++..+|++++|+..|+++++++|++..
T Consensus 678 ~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~ 712 (987)
T PRK09782 678 ALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQAL 712 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCch
Confidence 99999999999999999999999999999887433
No 35
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.44 E-value=6e-12 Score=121.70 Aligned_cols=142 Identities=13% Similarity=0.111 Sum_probs=112.2
Q ss_pred hhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHH
Q 023501 6 GLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGH 85 (281)
Q Consensus 6 ~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~ 85 (281)
++...|.....+..++......|++++|+..|.+++..+|+ +.++.++|.++.++|++++|+..+++++.++|+++.++
T Consensus 568 AL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~ 646 (987)
T PRK09782 568 AEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQ 646 (987)
T ss_pred HHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 33334444444555566666679999999999999999996 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023501 86 YLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHV 164 (281)
Q Consensus 86 ~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (281)
..+|.++...|++++|+..|++++++.|+... + ....+......+++.++...++++++..+.
T Consensus 647 ~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~-------a---------~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 647 AALGYALWDSGDIAQSREMLERAHKGLPDDPA-------L---------IRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-------H---------HHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999887333 2 222233344557777788888888876653
No 36
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.43 E-value=2.4e-11 Score=100.11 Aligned_cols=151 Identities=14% Similarity=0.120 Sum_probs=121.0
Q ss_pred chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch---HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchh--
Q 023501 9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVP---IYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVK-- 83 (281)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~-- 83 (281)
.++..+..+..+|..++..|+|++|+..|.+++...|+++ .+++.+|.++...|++++|+..++++++..|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 3456788999999999999999999999999999999876 68899999999999999999999999999998876
Q ss_pred -HHHHHHHHHHHh--------cChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Q 023501 84 -GHYLLGQTLLQR--------NEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAK-----YLLWEQESSKRSWELQ 149 (281)
Q Consensus 84 -a~~~la~~~~~~--------g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~ 149 (281)
+++.+|.++... |++++|+..|++++...|++.... .....+.... .....+....+.+++.
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~----~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~ 183 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAP----DAKKRMDYLRNRLAGKELYVARFYLKRGAYV 183 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHcCChH
Confidence 799999999987 889999999999999988754321 1111111111 1122334455668888
Q ss_pred HHHHHHHHHHHHhh
Q 023501 150 SLKEACEAALEEKH 163 (281)
Q Consensus 150 ~~~~~~~~~l~~~~ 163 (281)
++...+..++...+
T Consensus 184 ~A~~~~~~al~~~p 197 (235)
T TIGR03302 184 AAINRFETVVENYP 197 (235)
T ss_pred HHHHHHHHHHHHCC
Confidence 88888888887654
No 37
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.42 E-value=6.7e-12 Score=98.99 Aligned_cols=143 Identities=17% Similarity=0.126 Sum_probs=122.2
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc--C
Q 023501 2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD--H 79 (281)
Q Consensus 2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~--p 79 (281)
-|+++++.+|+...++..++..|.+.|+.+.|-+.|++|+.++|++..+++|.|.-+...|.|++|...+++|+..- |
T Consensus 57 nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~ 136 (250)
T COG3063 57 NLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYG 136 (250)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCC
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999998753 4
Q ss_pred cchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 80 DSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAAL 159 (281)
Q Consensus 80 ~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 159 (281)
.-...+-++|.|.++.|+++.|...|.+++.++|+.... .....+.+...+++..+..+++...
T Consensus 137 ~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~----------------~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 137 EPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPA----------------LLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred CcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChH----------------HHHHHHHHHhcccchHHHHHHHHHH
Confidence 557899999999999999999999999999999986653 3333344445566666665555554
Q ss_pred H
Q 023501 160 E 160 (281)
Q Consensus 160 ~ 160 (281)
.
T Consensus 201 ~ 201 (250)
T COG3063 201 Q 201 (250)
T ss_pred h
Confidence 3
No 38
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.42 E-value=1.1e-13 Score=119.27 Aligned_cols=72 Identities=26% Similarity=0.344 Sum_probs=64.4
Q ss_pred CCCCCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHHHHHc
Q 023501 202 AEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMDKH 274 (281)
Q Consensus 202 ~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~~~~~ 274 (281)
..+...+.|+||.+++.+||+++|||+||..||..|+.... .||+|+.++....+.+|..|.++|+.|....
T Consensus 21 ~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~-~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~R 92 (397)
T TIGR00599 21 YPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQP-KCPLCRAEDQESKLRSNWLVSEIVESFKNLR 92 (397)
T ss_pred cccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCC-CCCCCCCccccccCccchHHHHHHHHHHHhh
Confidence 34556799999999999999999999999999999998766 5999999998889999999999999996543
No 39
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.42 E-value=3.1e-11 Score=98.10 Aligned_cols=139 Identities=16% Similarity=0.161 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHH
Q 023501 11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQ 90 (281)
Q Consensus 11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~ 90 (281)
...+..+..+|..++..|++++|+..+.+++..+|.+..++..+|.++...|++++|+..++++++++|.+..+++.+|.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023501 91 TLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKH 163 (281)
Q Consensus 91 ~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (281)
++...|++++|+..+.+++...+.+.. ...... .+......++..++...+.+++...+
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~---------l~~~~~~~g~~~~A~~~~~~~~~~~~ 166 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQP-----ARSLEN---------AGLCALKAGDFDKAEKYLTRALQIDP 166 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccc-----hHHHHH---------HHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 999999999999999999976322111 111111 12223345666667777777766543
No 40
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.41 E-value=1.6e-11 Score=99.75 Aligned_cols=143 Identities=16% Similarity=0.111 Sum_probs=117.0
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc--Cc
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD--HD 80 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~--p~ 80 (281)
+++++...|..+..+..+|..++..|++++|+..|.+++...|.+..++.++|.++...|++++|+..+++++... |.
T Consensus 54 ~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 133 (234)
T TIGR02521 54 LDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQ 133 (234)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc
Confidence 4455666788889999999999999999999999999999999999999999999999999999999999999864 55
Q ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 81 SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALE 160 (281)
Q Consensus 81 ~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (281)
....++.+|.++...|++++|...+.+++...|.... .. ...+......+++.++...+++++.
T Consensus 134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~---------~~la~~~~~~~~~~~A~~~~~~~~~ 197 (234)
T TIGR02521 134 PARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPE-------SL---------LELAELYYLRGQYKDARAYLERYQQ 197 (234)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChH-------HH---------HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999776221 11 1122223344556666666666665
Q ss_pred H
Q 023501 161 E 161 (281)
Q Consensus 161 ~ 161 (281)
.
T Consensus 198 ~ 198 (234)
T TIGR02521 198 T 198 (234)
T ss_pred h
Confidence 4
No 41
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.40 E-value=1.1e-11 Score=90.72 Aligned_cols=102 Identities=13% Similarity=0.124 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc---hhHHHH
Q 023501 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV---PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS---VKGHYL 87 (281)
Q Consensus 14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~ 87 (281)
++.++..|..++..|+|++|+..|.+++...|++ +.+++.+|.++.+.|+++.|+..+++++...|++ +.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4678899999999999999999999999999876 5789999999999999999999999999999885 678999
Q ss_pred HHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501 88 LGQTLLQRNEYADGIKELEKALNLGRGA 115 (281)
Q Consensus 88 la~~~~~~g~~~~A~~~~~kal~~~p~~ 115 (281)
+|.++..+|++++|+..+.+++...|++
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 9999999999999999999999998773
No 42
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.40 E-value=2.6e-12 Score=97.60 Aligned_cols=94 Identities=11% Similarity=0.038 Sum_probs=88.4
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV 82 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 82 (281)
+..+...+|..+..+..+|..+...|++++|+..|.+++.++|+++.+++++|.|+..+|++++|+..+++|++++|+++
T Consensus 47 ~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~ 126 (144)
T PRK15359 47 FSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADA 126 (144)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 45667778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhc
Q 023501 83 KGHYLLGQTLLQRN 96 (281)
Q Consensus 83 ~a~~~la~~~~~~g 96 (281)
..+..+|.+...++
T Consensus 127 ~~~~~~~~~~~~l~ 140 (144)
T PRK15359 127 SWSEIRQNAQIMVD 140 (144)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998877654
No 43
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.40 E-value=8.5e-12 Score=86.28 Aligned_cols=98 Identities=30% Similarity=0.446 Sum_probs=93.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHh
Q 023501 16 QLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQR 95 (281)
Q Consensus 16 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~ 95 (281)
.+..+|..++..|++++|+..+.+++...|.+..++..+|.++...|++++|+..+++++.+.|.+..+++.+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHHHHHhhcc
Q 023501 96 NEYADGIKELEKALNLGR 113 (281)
Q Consensus 96 g~~~~A~~~~~kal~~~p 113 (281)
|++++|...+.+++..+|
T Consensus 82 ~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 82 GKYEEALEAYEKALELDP 99 (100)
T ss_pred HhHHHHHHHHHHHHccCC
Confidence 999999999999998865
No 44
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.40 E-value=1.6e-13 Score=80.32 Aligned_cols=39 Identities=31% Similarity=0.553 Sum_probs=31.7
Q ss_pred ccCCcccccCceecCCCcccccchHHhHhccCCC---CCCCC
Q 023501 210 CKITLDIFRDPVITPSGVTYERAVILDHLDKVGK---FDPIT 248 (281)
Q Consensus 210 c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~---~cP~~ 248 (281)
||||.++|.+||+++|||+||++||..+++.... .||+|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999999999999999999999986532 49987
No 45
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.40 E-value=1.8e-13 Score=105.44 Aligned_cols=62 Identities=26% Similarity=0.338 Sum_probs=51.9
Q ss_pred CCCCCCcccccCCcccccCceecCCCcccccchHHhHhcc---------------CCCCCCCCCCCcCCCCCcccHH
Q 023501 201 PAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDK---------------VGKFDPITREPLRESQLVPNLA 262 (281)
Q Consensus 201 ~~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~---------------~~~~cP~~~~~~~~~~~~~n~~ 262 (281)
..+...++.||||.+.+.+||+|+|||.||+.||.+|+.. +...||+|+.+++...++|.+.
T Consensus 12 ~~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 12 LVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred eccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 3444567999999999999999999999999999999852 1235999999999888888753
No 46
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.39 E-value=1.5e-12 Score=89.56 Aligned_cols=82 Identities=32% Similarity=0.514 Sum_probs=74.8
Q ss_pred hcCCHHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHH
Q 023501 26 SKDRYGAAIDAYTEAITLCPN--VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIK 103 (281)
Q Consensus 26 ~~~~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~ 103 (281)
..|+|+.|+.+|+++++..|+ +..++..+|.||++.|+|++|+..+++ .+.+|.++..++.+|.++..+|++++|+.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368999999999999999995 577888899999999999999999999 99999999999999999999999999999
Q ss_pred HHHHH
Q 023501 104 ELEKA 108 (281)
Q Consensus 104 ~~~ka 108 (281)
.++++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
No 47
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.39 E-value=2.1e-12 Score=85.20 Aligned_cols=67 Identities=27% Similarity=0.456 Sum_probs=65.0
Q ss_pred chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhc-ChHHHHHHHHHHHhhcc
Q 023501 47 VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRN-EYADGIKELEKALNLGR 113 (281)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g-~~~~A~~~~~kal~~~p 113 (281)
++..|..+|.+++..|+|++|+..++++++++|+++.+++.+|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 57899999999999999999999999999999999999999999999999 79999999999999977
No 48
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.38 E-value=6.1e-11 Score=101.08 Aligned_cols=108 Identities=15% Similarity=0.136 Sum_probs=94.8
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV 82 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 82 (281)
+.+++...|+.+.++..+|..+...|+|++|+..|+++++++|++..++.++|.++...|++++|+.+++++++++|+++
T Consensus 87 ~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 87 FSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 45677778899999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501 83 KGHYLLGQTLLQRNEYADGIKELEKALNL 111 (281)
Q Consensus 83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~ 111 (281)
..... ..+....+++++|+..+.+++..
T Consensus 167 ~~~~~-~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 167 YRALW-LYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHH-HHHHHccCCHHHHHHHHHHHHhh
Confidence 43222 22345577899999999877654
No 49
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.37 E-value=1.8e-11 Score=114.33 Aligned_cols=108 Identities=6% Similarity=-0.073 Sum_probs=101.8
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHH
Q 023501 10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLG 89 (281)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la 89 (281)
-+..++.+..+|.+....|.+++|...+..+++..|++..+..+++.++.+++++++|+..+++++..+|+++.+++.+|
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 35568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501 90 QTLLQRNEYADGIKELEKALNLGRGAKP 117 (281)
Q Consensus 90 ~~~~~~g~~~~A~~~~~kal~~~p~~~~ 117 (281)
.++.++|++++|+..|++++..+|++..
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~ 189 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFEN 189 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHH
Confidence 9999999999999999999997666444
No 50
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.37 E-value=2e-11 Score=97.68 Aligned_cols=122 Identities=19% Similarity=0.181 Sum_probs=106.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHH-HHhcC--hHHHHH
Q 023501 27 KDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTL-LQRNE--YADGIK 103 (281)
Q Consensus 27 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~-~~~g~--~~~A~~ 103 (281)
.++.++++..+.+++..+|+++..|..+|.+|..+|++++|+..+++|++++|+++..+..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 567799999999999999999999999999999999999999999999999999999999999985 67787 599999
Q ss_pred HHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023501 104 ELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHV 164 (281)
Q Consensus 104 ~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (281)
.++++++++|++.. .....+....+.++++++....+++++..+.
T Consensus 132 ~l~~al~~dP~~~~----------------al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 132 MIDKALALDANEVT----------------ALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHhCCCChh----------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99999999988443 2333344455678899999999999887654
No 51
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.37 E-value=8.3e-11 Score=104.06 Aligned_cols=111 Identities=22% Similarity=0.220 Sum_probs=87.8
Q ss_pred hhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc-----hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 023501 4 EAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV-----PIYWTNRALCHLKRNDWTKVEADCRKAIQLD 78 (281)
Q Consensus 4 ~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~ 78 (281)
+.+....+.....+..+|..+.+.|++++|+..|.+++...|.+ ..++.++|.++...|++++|+..++++++.+
T Consensus 131 ~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 210 (389)
T PRK11788 131 LQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD 210 (389)
T ss_pred HHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC
Confidence 34444456677778888888888888888888888888877764 2356678888888888888888888888888
Q ss_pred CcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 79 HDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 79 p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
|.+..+++.+|.++...|++++|+..+.+++..+|.
T Consensus 211 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 246 (389)
T PRK11788 211 PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPE 246 (389)
T ss_pred cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh
Confidence 888888888888888888888888888888877654
No 52
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.37 E-value=2.7e-11 Score=120.82 Aligned_cols=115 Identities=22% Similarity=0.308 Sum_probs=101.5
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchH--------------HHHHHHHHHHHhcCHHHHH
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPI--------------YWTNRALCHLKRNDWTKVE 68 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------~~~~~a~~~~~~~~~~~A~ 68 (281)
+++++...|+.+..+..+|..+++.|++++|+.+|+++++.+|++.. ....+|.++...|++++|+
T Consensus 292 l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~ 371 (1157)
T PRK11447 292 LQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAE 371 (1157)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHH
Confidence 55667778888999999999999999999999999999999997642 2235578888999999999
Q ss_pred HHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501 69 ADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP 117 (281)
Q Consensus 69 ~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~ 117 (281)
..++++++++|.+..+++.+|.++...|++++|+..|+++++++|++..
T Consensus 372 ~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~ 420 (1157)
T PRK11447 372 RLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTN 420 (1157)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999999999999999999999999999999887543
No 53
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=2.3e-11 Score=100.11 Aligned_cols=115 Identities=25% Similarity=0.289 Sum_probs=106.1
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc---CHHHHHHHHHHHHhhcC
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRN---DWTKVEADCRKAIQLDH 79 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~l~p 79 (281)
|+..+..+|++++-|..+|.+|+..|++..|...|.+|+++.|+++.++..+|.+++-.. .-.++...+++++++||
T Consensus 145 Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~ 224 (287)
T COG4235 145 LETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP 224 (287)
T ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC
Confidence 456677899999999999999999999999999999999999999999999999887554 46889999999999999
Q ss_pred cchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501 80 DSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP 117 (281)
Q Consensus 80 ~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~ 117 (281)
.++.+.+.+|..+++.|+|.+|+..|+..+++.|...+
T Consensus 225 ~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 225 ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 99999999999999999999999999999999876444
No 54
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.37 E-value=2e-11 Score=95.72 Aligned_cols=108 Identities=18% Similarity=0.208 Sum_probs=93.9
Q ss_pred hhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchh
Q 023501 7 LAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV---PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVK 83 (281)
Q Consensus 7 ~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 83 (281)
+...+..+..+..+|..+...|++++|+.+|.+++...|+. +.++.++|.++..+|++++|+..+++++.+.|.+..
T Consensus 28 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 107 (172)
T PRK02603 28 INKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPS 107 (172)
T ss_pred cccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence 34466788899999999999999999999999999987763 579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC--------------hHHHHHHHHHHHhhccC
Q 023501 84 GHYLLGQTLLQRNE--------------YADGIKELEKALNLGRG 114 (281)
Q Consensus 84 a~~~la~~~~~~g~--------------~~~A~~~~~kal~~~p~ 114 (281)
++..+|.++..+|+ +++|++.+++++.++|+
T Consensus 108 ~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~ 152 (172)
T PRK02603 108 ALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPN 152 (172)
T ss_pred HHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCch
Confidence 99999999999887 45566666666666554
No 55
>PRK15331 chaperone protein SicA; Provisional
Probab=99.36 E-value=2.1e-11 Score=92.21 Aligned_cols=106 Identities=13% Similarity=0.031 Sum_probs=100.4
Q ss_pred hhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHH
Q 023501 6 GLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGH 85 (281)
Q Consensus 6 ~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~ 85 (281)
....+++..+..+..|..+|..|++++|...|+-....+|.++..+.++|.|+..+++|++|+..|..|..++++++...
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~ 108 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV 108 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc
Confidence 34456778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501 86 YLLGQTLLQRNEYADGIKELEKALNL 111 (281)
Q Consensus 86 ~~la~~~~~~g~~~~A~~~~~kal~~ 111 (281)
+..|++++.+|+.+.|...|..++..
T Consensus 109 f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 109 FFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred chHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 99999999999999999999999874
No 56
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.34 E-value=2.8e-11 Score=97.27 Aligned_cols=106 Identities=20% Similarity=0.216 Sum_probs=99.6
Q ss_pred hchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHH
Q 023501 8 AGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYL 87 (281)
Q Consensus 8 ~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~ 87 (281)
...++....+..+|...+..|+|.+|+..+.++....|+|+.+|+.+|.+|.++|++++|...|.+++++.|+.+....+
T Consensus 94 ~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nN 173 (257)
T COG5010 94 IAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANN 173 (257)
T ss_pred ccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhh
Confidence 34566777888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcChHHHHHHHHHHHhhcc
Q 023501 88 LGQTLLQRNEYADGIKELEKALNLGR 113 (281)
Q Consensus 88 la~~~~~~g~~~~A~~~~~kal~~~p 113 (281)
+|..|+-.|+++.|..++..+....+
T Consensus 174 lgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 174 LGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999987744
No 57
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.34 E-value=2.4e-12 Score=111.40 Aligned_cols=102 Identities=33% Similarity=0.509 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHH
Q 023501 13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTL 92 (281)
Q Consensus 13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~ 92 (281)
.|..++..|+.++.-++|+.|+..|++||+++|+.+.++.+||.++.+.++|..|+.|+.+|++++|...++|++.|.+.
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV 82 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcChHHHHHHHHHHHhhccC
Q 023501 93 LQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 93 ~~~g~~~~A~~~~~kal~~~p~ 114 (281)
+.++++.+|...|++...+.|+
T Consensus 83 m~l~~~~~A~~~l~~~~~l~Pn 104 (476)
T KOG0376|consen 83 MALGEFKKALLDLEKVKKLAPN 104 (476)
T ss_pred HhHHHHHHHHHHHHHhhhcCcC
Confidence 9999999999999999999887
No 58
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.34 E-value=4.7e-11 Score=112.25 Aligned_cols=101 Identities=16% Similarity=0.158 Sum_probs=94.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHH----HHHHHHHHHhhcCcchhHHHHHHHHH
Q 023501 17 LRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTK----VEADCRKAIQLDHDSVKGHYLLGQTL 92 (281)
Q Consensus 17 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~----A~~~~~~al~l~p~~~~a~~~la~~~ 92 (281)
....|..+...|++++|+..|.+++...|+++.++.++|.++...|++++ |+..++++++++|+++.++..+|.++
T Consensus 215 ~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l 294 (656)
T PRK15174 215 AGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADAL 294 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999986 89999999999999999999999999
Q ss_pred HHhcChHHHHHHHHHHHhhccCCCC
Q 023501 93 LQRNEYADGIKELEKALNLGRGAKP 117 (281)
Q Consensus 93 ~~~g~~~~A~~~~~kal~~~p~~~~ 117 (281)
...|++++|+..+++++.++|++..
T Consensus 295 ~~~g~~~eA~~~l~~al~l~P~~~~ 319 (656)
T PRK15174 295 IRTGQNEKAIPLLQQSLATHPDLPY 319 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999999887543
No 59
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.34 E-value=5.9e-11 Score=105.00 Aligned_cols=104 Identities=17% Similarity=0.118 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch-----hHHH
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV-----KGHY 86 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~-----~a~~ 86 (281)
.....+..+|..++..|++++|+..|.++++..|.+..++..++.++.+.|++++|+..++++++.+|.+. ..+.
T Consensus 105 ~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 184 (389)
T PRK11788 105 QRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYC 184 (389)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 34567888899999999999999999999998888888999999999999999999999999998887653 3566
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501 87 LLGQTLLQRNEYADGIKELEKALNLGRGA 115 (281)
Q Consensus 87 ~la~~~~~~g~~~~A~~~~~kal~~~p~~ 115 (281)
.+|.++...|++++|+..|.++++..|+.
T Consensus 185 ~la~~~~~~~~~~~A~~~~~~al~~~p~~ 213 (389)
T PRK11788 185 ELAQQALARGDLDAARALLKKALAADPQC 213 (389)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhHCcCC
Confidence 78889999999999999999999887763
No 60
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=9.2e-11 Score=93.29 Aligned_cols=103 Identities=25% Similarity=0.359 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCc----------hHHHHHHHHHHHHhcCHHHHHHHHHH
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL--------CPNV----------PIYWTNRALCHLKRNDWTKVEADCRK 73 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~----------~~~~~~~a~~~~~~~~~~~A~~~~~~ 73 (281)
+...++...||.+|+.|+|.+|...|..||.. .|.+ ..++.|.++|++..|+|-++++.+..
T Consensus 176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se 255 (329)
T KOG0545|consen 176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE 255 (329)
T ss_pred hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence 34567889999999999999999999999854 3443 46899999999999999999999999
Q ss_pred HHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 74 AIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 74 al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
+++.+|.|.+|||+.|.+....=+..+|...|.++++++|.
T Consensus 256 iL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 256 ILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 99999999999999999999999999999999999999886
No 61
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.30 E-value=3.4e-10 Score=94.28 Aligned_cols=147 Identities=20% Similarity=0.211 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHH
Q 023501 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLL 93 (281)
Q Consensus 14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~ 93 (281)
-..+......++..|++..||.+.+..+++.|.++.++..||.||...|+...|+.+++.|-++..++.+++|..+.+++
T Consensus 155 ~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y 234 (504)
T KOG0624|consen 155 HWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLY 234 (504)
T ss_pred HHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 34566677788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023501 94 QRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHV 164 (281)
Q Consensus 94 ~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (281)
..|+.+.++...+.+|+++|+... .-..+..+.++.+.+..++...+.+.+.+..+.-++.++.++.
T Consensus 235 ~vgd~~~sL~~iRECLKldpdHK~----Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~ 301 (504)
T KOG0624|consen 235 TVGDAENSLKEIRECLKLDPDHKL----CFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPE 301 (504)
T ss_pred hhhhHHHHHHHHHHHHccCcchhh----HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCc
Confidence 999999999999999999887333 4566777888888888888888888888888888888887765
No 62
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.30 E-value=1.3e-10 Score=102.40 Aligned_cols=172 Identities=17% Similarity=0.098 Sum_probs=124.2
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc----------------------------------
Q 023501 2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV---------------------------------- 47 (281)
Q Consensus 2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------------------------- 47 (281)
.+|.++..+|+.+++|..+|.+....++=..||..+.++++++|++
T Consensus 307 afEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y 386 (579)
T KOG1125|consen 307 AFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKY 386 (579)
T ss_pred HHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccc
Confidence 5678888899999999999999998888888888888888888875
Q ss_pred -------------------------------------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhH
Q 023501 48 -------------------------------------------PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKG 84 (281)
Q Consensus 48 -------------------------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a 84 (281)
+.+...+|..|...|+|++|++.|+.||..+|++...
T Consensus 387 ~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~l 466 (579)
T KOG1125|consen 387 VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLL 466 (579)
T ss_pred hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHH
Confidence 4667777777777778888888888888888888888
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023501 85 HYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHV 164 (281)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (281)
|.+||-++..-.+.++|+..|.+|+++.|+.-. .....+-.....+-+.++.+.+..+|...+.
T Consensus 467 WNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR----------------~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 467 WNRLGATLANGNRSEEAISAYNRALQLQPGYVR----------------VRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHhhHHhcCCcccHHHHHHHHHHHhcCCCeee----------------eehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 888888888888888888888888888776332 2333444556678888888888888775433
Q ss_pred hhhhhhccchhhhhhHHHHHHHHHHHHHHHh
Q 023501 165 LDISRKEGFLDEASSTHLKQMEALRQVFRKA 195 (281)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 195 (281)
...... ....-+..|+.|+-.|...
T Consensus 531 s~~~~~------~~~~se~iw~tLR~als~~ 555 (579)
T KOG1125|consen 531 SRNHNK------APMASENIWQTLRLALSAM 555 (579)
T ss_pred cccccc------CCcchHHHHHHHHHHHHHc
Confidence 111100 1111355677777555443
No 63
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.28 E-value=1.5e-10 Score=90.38 Aligned_cols=106 Identities=19% Similarity=0.152 Sum_probs=91.0
Q ss_pred chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHH
Q 023501 9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN---VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGH 85 (281)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~ 85 (281)
.....+..+...|..+...|+|++|+..|.+++.+.|+ .+.++.++|.++...|++++|+..+++|+.++|.+..++
T Consensus 30 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~ 109 (168)
T CHL00033 30 SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQAL 109 (168)
T ss_pred chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH
Confidence 34557888999999999999999999999999998776 356899999999999999999999999999999999999
Q ss_pred HHHHHHHH-------HhcChH-------HHHHHHHHHHhhccC
Q 023501 86 YLLGQTLL-------QRNEYA-------DGIKELEKALNLGRG 114 (281)
Q Consensus 86 ~~la~~~~-------~~g~~~-------~A~~~~~kal~~~p~ 114 (281)
..+|.++. .+|+++ +|+..|++++..+|.
T Consensus 110 ~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 110 NNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 99999999 777766 555555566666554
No 64
>PLN02789 farnesyltranstransferase
Probab=99.27 E-value=9.7e-11 Score=100.19 Aligned_cols=116 Identities=12% Similarity=0.013 Sum_probs=106.5
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCH--HHHHHHHHHHHhhc
Q 023501 2 VLEAGLAGVAKQAEQLRLDGNYYFSKD-RYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDW--TKVEADCRKAIQLD 78 (281)
Q Consensus 2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~--~~A~~~~~~al~l~ 78 (281)
+.++++...|+...+|..+|..+...| ++++|+.++++++..+|++..+|.+|+.++.++|+. ++++..++++++++
T Consensus 59 lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d 138 (320)
T PLN02789 59 LTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD 138 (320)
T ss_pred HHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC
Confidence 345677888999999999999999998 689999999999999999999999999999999874 78899999999999
Q ss_pred CcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501 79 HDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP 117 (281)
Q Consensus 79 p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~ 117 (281)
|.|..+|..+|.++..+|++++|++.+.++++.+|.+..
T Consensus 139 pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~s 177 (320)
T PLN02789 139 AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNS 177 (320)
T ss_pred cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchh
Confidence 999999999999999999999999999999999887544
No 65
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.27 E-value=1.3e-10 Score=116.07 Aligned_cols=115 Identities=17% Similarity=0.132 Sum_probs=101.3
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHH-------------------------
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALC------------------------- 57 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~------------------------- 57 (281)
+++++...|..+..+..+|..+...|++++|+..|++++..+|++..++.+++.+
T Consensus 374 ~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~ 453 (1157)
T PRK11447 374 YQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSID 453 (1157)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHH
Confidence 4556666778888999999999999999999999999999999987766555444
Q ss_pred -----------------HHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501 58 -----------------HLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP 117 (281)
Q Consensus 58 -----------------~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~ 117 (281)
+...|++++|+..++++++++|+++.+++.+|.+|..+|++++|+..+++++...|....
T Consensus 454 ~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~ 530 (1157)
T PRK11447 454 DIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPE 530 (1157)
T ss_pred HHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 446799999999999999999999999999999999999999999999999999886443
No 66
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.26 E-value=2.8e-11 Score=78.82 Aligned_cols=64 Identities=20% Similarity=0.327 Sum_probs=43.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501 19 LDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV 82 (281)
Q Consensus 19 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 82 (281)
.+|..++..|+|++|+..|++++..+|+++.++..+|.++..+|++++|+..++++++++|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4566667777777777777777777777777777777777777777777777777777776653
No 67
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.26 E-value=2.5e-10 Score=93.99 Aligned_cols=103 Identities=18% Similarity=0.202 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchH---HHHHHHHHHHHh--------cCHHHHHHHHHHHHhhcCcc
Q 023501 13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPI---YWTNRALCHLKR--------NDWTKVEADCRKAIQLDHDS 81 (281)
Q Consensus 13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~a~~~~~~--------~~~~~A~~~~~~al~l~p~~ 81 (281)
...++..+|..++..|++++|+..|.++++..|+++. +++.+|.++... |++++|+..++++++.+|.+
T Consensus 69 ~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 148 (235)
T TIGR03302 69 AEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS 148 (235)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC
Confidence 4467899999999999999999999999999998776 689999999887 88999999999999999998
Q ss_pred hhHH-----------------HHHHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501 82 VKGH-----------------YLLGQTLLQRNEYADGIKELEKALNLGRGA 115 (281)
Q Consensus 82 ~~a~-----------------~~la~~~~~~g~~~~A~~~~~kal~~~p~~ 115 (281)
..++ +.+|..+...|++.+|+..+.+++...|+.
T Consensus 149 ~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 199 (235)
T TIGR03302 149 EYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDT 199 (235)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC
Confidence 6543 467888999999999999999999998763
No 68
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.25 E-value=2.9e-10 Score=106.34 Aligned_cols=111 Identities=11% Similarity=-0.075 Sum_probs=107.3
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501 2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS 81 (281)
Q Consensus 2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 81 (281)
+|+.+.+..|+.+.+....|..+.+.+++++|+..+++++..+|+++.+++.+|.++.++|++++|+..|++++..+|++
T Consensus 108 ~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~ 187 (694)
T PRK15179 108 VWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEF 187 (694)
T ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCc
Confidence 46677888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhhc
Q 023501 82 VKGHYLLGQTLLQRNEYADGIKELEKALNLG 112 (281)
Q Consensus 82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~ 112 (281)
..++..+|.++..+|+.++|...|+++++..
T Consensus 188 ~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 188 ENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999984
No 69
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.25 E-value=3.5e-10 Score=109.51 Aligned_cols=110 Identities=24% Similarity=0.323 Sum_probs=84.8
Q ss_pred hhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhH
Q 023501 5 AGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKG 84 (281)
Q Consensus 5 ~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a 84 (281)
.+....|.....+..+|..+...|++++|+..+.+++...|.++.+|..+|.++...|++++|+..++++++.+|.++.+
T Consensus 558 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 637 (899)
T TIGR02917 558 KAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALA 637 (899)
T ss_pred HHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 33444455556666777777777788888888887777777778888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 85 HYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
+..+|.++...|++++|+..|.+++...|+
T Consensus 638 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 667 (899)
T TIGR02917 638 LLLLADAYAVMKNYAKAITSLKRALELKPD 667 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 888888888888888888888888877665
No 70
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.24 E-value=3e-11 Score=102.20 Aligned_cols=104 Identities=20% Similarity=0.227 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHH
Q 023501 11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQ 90 (281)
Q Consensus 11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~ 90 (281)
+.++..+...|..+.+.|++++|+..|+++++.+|+++.+...++.++...|+++++...+....+..|.++..+..+|.
T Consensus 143 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~ 222 (280)
T PF13429_consen 143 PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAA 222 (280)
T ss_dssp -T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 56778888999999999999999999999999999999999999999999999999888888888888888888899999
Q ss_pred HHHHhcChHHHHHHHHHHHhhccC
Q 023501 91 TLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 91 ~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
++..+|++++|+.+|+++++..|+
T Consensus 223 ~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 223 AYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred Hhcccccccccccccccccccccc
Confidence 999999999999999999998776
No 71
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.23 E-value=2.1e-10 Score=111.11 Aligned_cols=99 Identities=17% Similarity=0.145 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHH
Q 023501 15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQ 94 (281)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~ 94 (281)
..+..+|..+...|++++|+..+.+++...|++..++..+|.+|..+|++++|+..++++++.+|+++.++..+|.++..
T Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 816 (899)
T TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLE 816 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 44455666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred hcChHHHHHHHHHHHhhccC
Q 023501 95 RNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 95 ~g~~~~A~~~~~kal~~~p~ 114 (281)
.|+ .+|+..+++++.+.|+
T Consensus 817 ~~~-~~A~~~~~~~~~~~~~ 835 (899)
T TIGR02917 817 LKD-PRALEYAEKALKLAPN 835 (899)
T ss_pred cCc-HHHHHHHHHHHhhCCC
Confidence 666 5566666666666554
No 72
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.6e-09 Score=93.38 Aligned_cols=149 Identities=16% Similarity=0.090 Sum_probs=123.5
Q ss_pred hhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchh
Q 023501 4 EAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVK 83 (281)
Q Consensus 4 ~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 83 (281)
..|++..|..-++|+-+|+.|--.+...=|+-+|++|+...|+|+..|..+|.||.++++.++|++.|.+|+.....+..
T Consensus 388 RrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~ 467 (559)
T KOG1155|consen 388 RRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS 467 (559)
T ss_pred HHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH
Confidence 35777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 84 GHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEE 161 (281)
Q Consensus 84 a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (281)
++.++|.+|.++++..+|.+.|++.++..-..+. +...+ .+...+.+.-..+.+.++++..+....+..
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~-------~~~~t--~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGE-------IDDET--IKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc-------cchHH--HHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 9999999999999999999999999985311111 11111 123344555556667777777777776653
No 73
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=99.22 E-value=3.3e-12 Score=104.85 Aligned_cols=65 Identities=29% Similarity=0.392 Sum_probs=60.6
Q ss_pred CcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHHH
Q 023501 206 DYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYM 271 (281)
Q Consensus 206 ~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~~ 271 (281)
+-+.|.||++.|.-|++||||||||.-||..+|...+. ||.|..++....|..|..|.++|+.|-
T Consensus 22 ~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~-CP~C~~~~~Es~Lr~n~il~Eiv~S~~ 86 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQ-CPTCCVTVTESDLRNNRILDEIVKSLN 86 (442)
T ss_pred HHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCC-CCceecccchhhhhhhhHHHHHHHHHH
Confidence 45789999999999999999999999999999998885 999999999999999999999999883
No 74
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=5.9e-12 Score=98.83 Aligned_cols=57 Identities=23% Similarity=0.427 Sum_probs=49.8
Q ss_pred CCcccccCCcccccCceecCCCcccccchHHhHhccCCC--CCCCCCCCcCCCCCcccH
Q 023501 205 PDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGK--FDPITREPLRESQLVPNL 261 (281)
Q Consensus 205 p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~--~cP~~~~~~~~~~~~~n~ 261 (281)
-..|.|.||.+.-+|||+|.|||-||.-||.+|+..... .||+|+..++.+.++|=+
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 357999999999999999999999999999999975433 599999999888887754
No 75
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.20 E-value=3.3e-10 Score=84.93 Aligned_cols=113 Identities=13% Similarity=0.003 Sum_probs=95.3
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 35 DAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 35 ~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
..|.+++..+|++......+|.++...|++++|...+++++.++|.++.+++.+|.++..+|++++|+..+++++..+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023501 115 AKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKH 163 (281)
Q Consensus 115 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (281)
+... ....+......++.+.+...++.+++..+
T Consensus 84 ~~~~----------------~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 84 DPRP----------------YFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred ChHH----------------HHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 4332 12222233345667777788888887654
No 76
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=2e-10 Score=101.01 Aligned_cols=112 Identities=18% Similarity=0.168 Sum_probs=102.0
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-------CchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCP-------NVPIYWTNRALCHLKRNDWTKVEADCRKAI 75 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 75 (281)
+..|....|..+-++.++|.+.|..+.|.+|+.+|+.++..-+ .....+.|+|.++.+++.+++|+..+++|+
T Consensus 403 f~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL 482 (611)
T KOG1173|consen 403 FKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKAL 482 (611)
T ss_pred HHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 4456777888999999999999999999999999999984422 245679999999999999999999999999
Q ss_pred hhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 76 QLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 76 ~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
.+.|.++.+|-.+|.+|..+|+++.|++.|.|+|.+.|+
T Consensus 483 ~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~ 521 (611)
T KOG1173|consen 483 LLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPD 521 (611)
T ss_pred HcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence 999999999999999999999999999999999999887
No 77
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.16 E-value=1.3e-10 Score=75.64 Aligned_cols=64 Identities=27% Similarity=0.424 Sum_probs=59.5
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501 52 TNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGA 115 (281)
Q Consensus 52 ~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~ 115 (281)
+.+|..++..|+|++|+..++++++.+|.++.+++.+|.++..+|++++|+..|+++++++|++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 3578899999999999999999999999999999999999999999999999999999998873
No 78
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=2.1e-11 Score=98.61 Aligned_cols=56 Identities=21% Similarity=0.377 Sum_probs=49.0
Q ss_pred CCCCCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCc
Q 023501 202 AEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLV 258 (281)
Q Consensus 202 ~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~ 258 (281)
...+....|.||.+-+++|..|||||.||.+||..|.....- ||+||+++++.+++
T Consensus 234 ~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~e-CPlCR~~~~pskvi 289 (293)
T KOG0317|consen 234 SIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAE-CPLCREKFQPSKVI 289 (293)
T ss_pred cCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccC-CCcccccCCCccee
Confidence 344466999999999999999999999999999999987774 99999999876553
No 79
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.14 E-value=5.4e-10 Score=101.47 Aligned_cols=115 Identities=20% Similarity=0.129 Sum_probs=107.3
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHH--HHHHHHhhcC
Q 023501 2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEA--DCRKAIQLDH 79 (281)
Q Consensus 2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~--~~~~al~l~p 79 (281)
+|.++-...+..+..++..|..+..+|.+.+|...|..|+.++|+++.....+|.++.+.|+..-|.+ .+..++++||
T Consensus 672 CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp 751 (799)
T KOG4162|consen 672 CLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP 751 (799)
T ss_pred HHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC
Confidence 45666677788899999999999999999999999999999999999999999999999999888888 9999999999
Q ss_pred cchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCC
Q 023501 80 DSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAK 116 (281)
Q Consensus 80 ~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~ 116 (281)
.++++||.+|.++..+|+.++|.+.|..++.+.+..+
T Consensus 752 ~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 752 LNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 9999999999999999999999999999999976643
No 80
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.14 E-value=4.3e-10 Score=98.12 Aligned_cols=95 Identities=13% Similarity=0.124 Sum_probs=88.9
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501 2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS 81 (281)
Q Consensus 2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 81 (281)
++.+++...|..+..+..+|..++..|+|++|+..+.+++.++|.++.+|+.+|.+|+.+|+|++|+..++++++++|++
T Consensus 24 ~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~ 103 (356)
T PLN03088 24 LYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGD 103 (356)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence 45677888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhc
Q 023501 82 VKGHYLLGQTLLQRN 96 (281)
Q Consensus 82 ~~a~~~la~~~~~~g 96 (281)
..++..++.+...+.
T Consensus 104 ~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 104 SRFTKLIKECDEKIA 118 (356)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999888866663
No 81
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.14 E-value=1.6e-09 Score=90.19 Aligned_cols=102 Identities=11% Similarity=0.064 Sum_probs=92.9
Q ss_pred HHHHHHHHHHH-HhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc---chhHHH
Q 023501 14 AEQLRLDGNYY-FSKDRYGAAIDAYTEAITLCPNV---PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD---SVKGHY 86 (281)
Q Consensus 14 a~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~---~~~a~~ 86 (281)
....+..|..+ ++.|+|++|+..|...+...|++ +.+++.+|.+|+..|++++|+..|.++++..|+ .+.+++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 46677777776 67899999999999999999997 579999999999999999999999999998877 478999
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501 87 LLGQTLLQRNEYADGIKELEKALNLGRGA 115 (281)
Q Consensus 87 ~la~~~~~~g~~~~A~~~~~kal~~~p~~ 115 (281)
.+|.++..+|++++|...|+++++..|++
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 99999999999999999999999998873
No 82
>PLN02789 farnesyltranstransferase
Probab=99.13 E-value=2.9e-09 Score=91.19 Aligned_cols=139 Identities=17% Similarity=0.108 Sum_probs=111.0
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCcchhHHHHH
Q 023501 10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRN-DWTKVEADCRKAIQLDHDSVKGHYLL 88 (281)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~p~~~~a~~~l 88 (281)
.++..+++.-+-..+...+++++|+..++++|.++|.+..+|..|+.++..+| ++++++..++++++.+|++..+|+.+
T Consensus 33 ~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R 112 (320)
T PLN02789 33 TPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHR 112 (320)
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHH
Confidence 45556666556666778889999999999999999999999999999999999 68999999999999999999999999
Q ss_pred HHHHHHhcCh--HHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023501 89 GQTLLQRNEY--ADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHV 164 (281)
Q Consensus 89 a~~~~~~g~~--~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (281)
+.++..+|+. ++++..+.++++++|.+.. ++...+.+.. ..+.++++...+.++|+.++.
T Consensus 113 ~~~l~~l~~~~~~~el~~~~kal~~dpkNy~-------AW~~R~w~l~---------~l~~~~eeL~~~~~~I~~d~~ 174 (320)
T PLN02789 113 RWLAEKLGPDAANKELEFTRKILSLDAKNYH-------AWSHRQWVLR---------TLGGWEDELEYCHQLLEEDVR 174 (320)
T ss_pred HHHHHHcCchhhHHHHHHHHHHHHhCcccHH-------HHHHHHHHHH---------HhhhHHHHHHHHHHHHHHCCC
Confidence 9999999974 7889999999999887332 2322222222 224466677777777776543
No 83
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.13 E-value=6.6e-09 Score=90.38 Aligned_cols=148 Identities=18% Similarity=0.103 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHH
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQT 91 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~ 91 (281)
......+-.+..++..|.+++|...++..+...|+|+.++..++.++++.|+.++|.+.+++++.++|..+-..+.+|++
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~a 383 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQA 383 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 44556666677777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 023501 92 LLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLW-EQESSKRSWELQSLKEACEAAL 159 (281)
Q Consensus 92 ~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l 159 (281)
|++.|++.+|+..++..+.-+|+.+.....+......++....... ..+.....+.++.++..+..+.
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 7777777777777777777666644433333333333333322222 2222233344455544444443
No 84
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.13 E-value=7.2e-10 Score=106.24 Aligned_cols=108 Identities=11% Similarity=0.129 Sum_probs=102.0
Q ss_pred chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHH
Q 023501 9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLL 88 (281)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (281)
..+..+..+..+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|+++. ++.+
T Consensus 44 ~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~l 122 (765)
T PRK10049 44 HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLAL 122 (765)
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHH
Confidence 345667789999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501 89 GQTLLQRNEYADGIKELEKALNLGRGAKP 117 (281)
Q Consensus 89 a~~~~~~g~~~~A~~~~~kal~~~p~~~~ 117 (281)
|.++...|++++|+..+++++++.|++..
T Consensus 123 a~~l~~~g~~~~Al~~l~~al~~~P~~~~ 151 (765)
T PRK10049 123 AYVYKRAGRHWDELRAMTQALPRAPQTQQ 151 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999999999999988544
No 85
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=2.7e-10 Score=93.43 Aligned_cols=98 Identities=16% Similarity=0.126 Sum_probs=90.3
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501 2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS 81 (281)
Q Consensus 2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 81 (281)
.+.+|+..+|++|-.|-+++.+|.+.|.|+.|++-+..||.++|..+.+|..+|.+|+.+|++++|+..|++||.++|+|
T Consensus 103 kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~N 182 (304)
T KOG0553|consen 103 KYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDN 182 (304)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcChH
Q 023501 82 VKGHYLLGQTLLQRNEYA 99 (281)
Q Consensus 82 ~~a~~~la~~~~~~g~~~ 99 (281)
....-.|..+-..+++..
T Consensus 183 e~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 183 ESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 987777777766666554
No 86
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=99.13 E-value=2.4e-11 Score=97.80 Aligned_cols=64 Identities=28% Similarity=0.294 Sum_probs=58.7
Q ss_pred CcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHH
Q 023501 206 DYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAY 270 (281)
Q Consensus 206 ~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~ 270 (281)
..+.|-||...++-|++|+|||+||.-||..||...+ .||+|+.+....-+..+..++.+++-|
T Consensus 24 s~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp-~CP~Cr~~~~esrlr~~s~~~ei~es~ 87 (391)
T COG5432 24 SMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQP-FCPVCREDPCESRLRGSSGSREINESH 87 (391)
T ss_pred hHHHhhhhhheeecceecccccchhHHHHHHHhcCCC-CCccccccHHhhhcccchhHHHHHHhh
Confidence 4578999999999999999999999999999999887 499999999988899998888888877
No 87
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.13 E-value=2.7e-11 Score=70.10 Aligned_cols=38 Identities=39% Similarity=0.669 Sum_probs=32.7
Q ss_pred ccCCcccccCc-eecCCCcccccchHHhHhccCCCCCCCC
Q 023501 210 CKITLDIFRDP-VITPSGVTYERAVILDHLDKVGKFDPIT 248 (281)
Q Consensus 210 c~i~~~~~~~p-v~~~~g~~~~~~~i~~~~~~~~~~cP~~ 248 (281)
||||.+.+.+| |+++|||+||+.||.+|+..+. .||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~-~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNP-KCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTS-B-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcC-CCcCC
Confidence 79999999999 5799999999999999999854 69987
No 88
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.12 E-value=3.1e-10 Score=74.51 Aligned_cols=68 Identities=24% Similarity=0.328 Sum_probs=61.9
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHH
Q 023501 24 YFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQT 91 (281)
Q Consensus 24 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~ 91 (281)
+++.|+|++|+..|++++..+|++..++..+|.||++.|++++|...+++++..+|+++..+..++.+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 46789999999999999999999999999999999999999999999999999999998888777753
No 89
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=99.11 E-value=7e-11 Score=73.54 Aligned_cols=58 Identities=21% Similarity=0.365 Sum_probs=33.2
Q ss_pred cccccCCcccccCcee-cCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHH
Q 023501 207 YLCCKITLDIFRDPVI-TPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAV 267 (281)
Q Consensus 207 ~~~c~i~~~~~~~pv~-~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i 267 (281)
.+.|++|..+|+.||. +.|.|.||+.||.+.+. . .||+|..|--..++.-|..|.++|
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~--~-~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG--S-ECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTT--T-B-SSS--B-S-SS----HHHHHHH
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC--C-CCCCcCChHHHHHHHhhhhhhccC
Confidence 4679999999999995 78999999999999775 2 399999999989999999888765
No 90
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.11 E-value=6.1e-10 Score=74.17 Aligned_cols=70 Identities=23% Similarity=0.470 Sum_probs=60.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHH
Q 023501 21 GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQ 90 (281)
Q Consensus 21 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~ 90 (281)
...+++.++|++|+.++++++..+|+++.++..+|.++..+|++.+|..+++++++.+|+++.+...++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 4678888999999999999999999999999999999999999999999999999999988877665543
No 91
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.10 E-value=1.2e-08 Score=82.14 Aligned_cols=149 Identities=19% Similarity=0.176 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch---hHH
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV---PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV---KGH 85 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~---~a~ 85 (281)
..+..++..|..++..|+|.+|+..|++.+...|.. ..+...+|.++++.|+|+.|+..+++.++..|.++ .++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 467889999999999999999999999999998874 57889999999999999999999999999999864 589
Q ss_pred HHHHHHHHHhcC-----------hHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Q 023501 86 YLLGQTLLQRNE-----------YADGIKELEKALNLGRGAKPKGYIVEDIWQELARA-----KYLLWEQESSKRSWELQ 149 (281)
Q Consensus 86 ~~la~~~~~~g~-----------~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~ 149 (281)
+.+|.+++.+.. ..+|+..|+..+..-|++.-. ......+..+ ...+..++-..+.+.+.
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~----~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~ 158 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA----EEAKKRLAELRNRLAEHELYIARFYYKRGKYK 158 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH----HHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 999999877642 458999999999998885443 3333322222 23344455566778888
Q ss_pred HHHHHHHHHHHHhhh
Q 023501 150 SLKEACEAALEEKHV 164 (281)
Q Consensus 150 ~~~~~~~~~l~~~~~ 164 (281)
.+...++.+++..+.
T Consensus 159 aA~~r~~~v~~~yp~ 173 (203)
T PF13525_consen 159 AAIIRFQYVIENYPD 173 (203)
T ss_dssp HHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHCCC
Confidence 888888888887664
No 92
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.09 E-value=1.5e-08 Score=83.56 Aligned_cols=149 Identities=14% Similarity=0.097 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHH---HHHHHHHHHhcCHHHHHHHHHHHHhhcCcc---hhHH
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYW---TNRALCHLKRNDWTKVEADCRKAIQLDHDS---VKGH 85 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~---~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~ 85 (281)
..+..++..|..++..|+|++|+..|++++...|..+.+. ..+|.+|++.++|++|+..+++.+++.|++ +.++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 3577788999999999999999999999999999876544 889999999999999999999999999877 4688
Q ss_pred HHHHHHHHHhcC------------------hHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHH-----HHHHHHHHHH
Q 023501 86 YLLGQTLLQRNE------------------YADGIKELEKALNLGRGAKPKGYIVEDIWQELARA-----KYLLWEQESS 142 (281)
Q Consensus 86 ~~la~~~~~~g~------------------~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~ 142 (281)
|.+|.++..+++ -.+|+..|++.++.-|++.- .......+..+ +..+..++-.
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y----a~~A~~rl~~l~~~la~~e~~ia~~Y 185 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY----TTDATKRLVFLKDRLAKYELSVAEYY 185 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChh----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988755541 25788999999999887433 23333322222 2334445555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 023501 143 KRSWELQSLKEACEAALEEKHV 164 (281)
Q Consensus 143 ~~~~~~~~~~~~~~~~l~~~~~ 164 (281)
.+.+.+..+...++.+++..+.
T Consensus 186 ~~~~~y~AA~~r~~~v~~~Yp~ 207 (243)
T PRK10866 186 TKRGAYVAVVNRVEQMLRDYPD 207 (243)
T ss_pred HHcCchHHHHHHHHHHHHHCCC
Confidence 5667777888888888876654
No 93
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=99.08 E-value=7.2e-09 Score=74.77 Aligned_cols=101 Identities=21% Similarity=0.240 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc----hhHHHH
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS----VKGHYL 87 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~----~~a~~~ 87 (281)
+....+...|..+...|+.+.|++.|.+++.+.|.++.+|+|+|+++.-.|+.++|++++++|+++.-.. -.+|..
T Consensus 41 e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQ 120 (175)
T KOG4555|consen 41 KASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQ 120 (175)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 4456677889999999999999999999999999999999999999999999999999999999997543 357889
Q ss_pred HHHHHHHhcChHHHHHHHHHHHhhc
Q 023501 88 LGQTLLQRNEYADGIKELEKALNLG 112 (281)
Q Consensus 88 la~~~~~~g~~~~A~~~~~kal~~~ 112 (281)
.|.+|..+|+-+.|...|+.+-.+.
T Consensus 121 Rg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 121 RGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHHHhCchHHHHHhHHHHHHhC
Confidence 9999999999999999999998883
No 94
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.07 E-value=2e-08 Score=92.86 Aligned_cols=102 Identities=18% Similarity=0.088 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHH
Q 023501 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLL 93 (281)
Q Consensus 14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~ 93 (281)
...+...|+.+|.+|++++|...+.++|.++|.++.+|+-+|.+|-++|+.++|+...-.|--++|.+..-|..++....
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 56677778888888888888888888888888888888888888888888888888887888888888888888888888
Q ss_pred HhcChHHHHHHHHHHHhhccCC
Q 023501 94 QRNEYADGIKELEKALNLGRGA 115 (281)
Q Consensus 94 ~~g~~~~A~~~~~kal~~~p~~ 115 (281)
++|.+.+|.-+|.+|++.+|.+
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~n 240 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPSN 240 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCcc
Confidence 8888888888888888887664
No 95
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=5.2e-11 Score=89.40 Aligned_cols=53 Identities=26% Similarity=0.369 Sum_probs=45.9
Q ss_pred CcccccCCcccccC--ceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcc
Q 023501 206 DYLCCKITLDIFRD--PVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVP 259 (281)
Q Consensus 206 ~~~~c~i~~~~~~~--pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~ 259 (281)
..+.||||++-+.. ||.|.|||.||+.||...++... .||+|++.++.+++.+
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~-~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTN-KCPTCRKKITHKQFHR 184 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHHhCC-CCCCcccccchhhhee
Confidence 34899999998887 77799999999999999999776 5999999998776654
No 96
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.06 E-value=1e-10 Score=97.19 Aligned_cols=102 Identities=25% Similarity=0.371 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHH
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQT 91 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~ 91 (281)
+++...+..+..++..|+++.||..|+.+|.++|..+.+|.+|+.++++++++..|+++|..|++++|+..+.|-..|.+
T Consensus 112 eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A 191 (377)
T KOG1308|consen 112 DQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYA 191 (377)
T ss_pred HHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHH
Confidence 45666778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcChHHHHHHHHHHHhhcc
Q 023501 92 LLQRNEYADGIKELEKALNLGR 113 (281)
Q Consensus 92 ~~~~g~~~~A~~~~~kal~~~p 113 (281)
...+|+|++|..++..+.+++-
T Consensus 192 ~rllg~~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 192 ERLLGNWEEAAHDLALACKLDY 213 (377)
T ss_pred HHHhhchHHHHHHHHHHHhccc
Confidence 9999999999999999999953
No 97
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=5.7e-09 Score=88.94 Aligned_cols=140 Identities=18% Similarity=0.152 Sum_probs=118.2
Q ss_pred hchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------------hHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 023501 8 AGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV------------PIYWTNRALCHLKRNDWTKVEADCRKAI 75 (281)
Q Consensus 8 ~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------------~~~~~~~a~~~~~~~~~~~A~~~~~~al 75 (281)
+.++.++++++..|..++...+.+.|+.+|++++.++|+. -..+..+|+-.++.|+|..|.+.|..||
T Consensus 197 kld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal 276 (486)
T KOG0550|consen 197 KLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEAL 276 (486)
T ss_pred hcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhh
Confidence 4567889999999999999999999999999999999984 2567788999999999999999999999
Q ss_pred hhcCcc----hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 76 QLDHDS----VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSL 151 (281)
Q Consensus 76 ~l~p~~----~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 151 (281)
.++|.+ .+.|.++|.+...+|+.++|+..++.++++++. -|...+ ..++.....+++.++
T Consensus 277 ~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s---------yikall-------~ra~c~l~le~~e~A 340 (486)
T KOG0550|consen 277 NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS---------YIKALL-------RRANCHLALEKWEEA 340 (486)
T ss_pred cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH---------HHHHHH-------HHHHHHHHHHHHHHH
Confidence 999975 678999999999999999999999999999654 344333 344455566777888
Q ss_pred HHHHHHHHHHhh
Q 023501 152 KEACEAALEEKH 163 (281)
Q Consensus 152 ~~~~~~~l~~~~ 163 (281)
.+.++++++...
T Consensus 341 V~d~~~a~q~~~ 352 (486)
T KOG0550|consen 341 VEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHhhcc
Confidence 888888877643
No 98
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.05 E-value=4.7e-09 Score=97.63 Aligned_cols=128 Identities=16% Similarity=0.132 Sum_probs=111.1
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 023501 2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV---PIYWTNRALCHLKRNDWTKVEADCRKAIQLD 78 (281)
Q Consensus 2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~ 78 (281)
++..+....+.++.++..+++-+|..|+|+.+...+.-++...-.. +..++.+|.+|..+|+|++|..+|.++++.+
T Consensus 258 ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~ 337 (1018)
T KOG2002|consen 258 LLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD 337 (1018)
T ss_pred HHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC
Confidence 3556677788899999999999999999999999999999887554 4569999999999999999999999999999
Q ss_pred Ccc-hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHH
Q 023501 79 HDS-VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQEL 129 (281)
Q Consensus 79 p~~-~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l 129 (281)
|++ .-.++.+|++++..|+++.|+..|+++++..|++....++.+.++...
T Consensus 338 ~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~ 389 (1018)
T KOG2002|consen 338 NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHS 389 (1018)
T ss_pred CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhh
Confidence 988 889999999999999999999999999999988666544555555444
No 99
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.04 E-value=5.9e-09 Score=100.01 Aligned_cols=132 Identities=13% Similarity=-0.022 Sum_probs=78.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---------------chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501 17 LRLDGNYYFSKDRYGAAIDAYTEAITLCPN---------------VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS 81 (281)
Q Consensus 17 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 81 (281)
...++..+...|++++|+..+.++....|. ...++..+|.++...|++++|+..+++++...|.+
T Consensus 313 ~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n 392 (765)
T PRK10049 313 LADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGN 392 (765)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 344445556666666666666666665542 12345566666666666666666666666666666
Q ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 82 VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEE 161 (281)
Q Consensus 82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (281)
+.+++.+|.++...|++++|++.+++++.+.|++.. .....+....+.+++..+...+..+++.
T Consensus 393 ~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~----------------l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 393 QGLRIDYASVLQARGWPRAAENELKKAEVLEPRNIN----------------LEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH----------------HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 666666666666666666666666666666655222 1122222344455666777777777765
Q ss_pred hhh
Q 023501 162 KHV 164 (281)
Q Consensus 162 ~~~ 164 (281)
.|.
T Consensus 457 ~Pd 459 (765)
T PRK10049 457 EPQ 459 (765)
T ss_pred CCC
Confidence 543
No 100
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.04 E-value=4.4e-10 Score=95.12 Aligned_cols=110 Identities=16% Similarity=0.172 Sum_probs=82.5
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501 2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS 81 (281)
Q Consensus 2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 81 (281)
++++++...|++......++..+...|+++++...+.......|+++.++..+|.++..+|++++|+..++++++.+|++
T Consensus 168 ~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 168 DYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 46678888999999999999999999999999999999888889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501 82 VKGHYLLGQTLLQRNEYADGIKELEKALNL 111 (281)
Q Consensus 82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~ 111 (281)
+..+..+|.++...|+.++|...+.+++..
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 999999999999999999999999988764
No 101
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.04 E-value=2.1e-08 Score=92.71 Aligned_cols=112 Identities=13% Similarity=0.114 Sum_probs=108.8
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501 2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS 81 (281)
Q Consensus 2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 81 (281)
++.+.+..+|..+..|+.+|.+|-++|+.++|..+...|-.++|++...|..++....++|++..|.-+|.+||+++|.+
T Consensus 161 i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n 240 (895)
T KOG2076|consen 161 ILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSN 240 (895)
T ss_pred HHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcc
Confidence 56778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhhcc
Q 023501 82 VKGHYLLGQTLLQRNEYADGIKELEKALNLGR 113 (281)
Q Consensus 82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p 113 (281)
.+..+..+.+|-++|+...|...|.+++.++|
T Consensus 241 ~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 241 WELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999987
No 102
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.02 E-value=1.4e-08 Score=76.68 Aligned_cols=105 Identities=10% Similarity=-0.010 Sum_probs=86.7
Q ss_pred HHhC-CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCc
Q 023501 41 ITLC-PNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKG 119 (281)
Q Consensus 41 l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~ 119 (281)
..+. ++.-...+.+|..++..|++++|...++.++.+||.+...|+.||.++-.+|+|++|+..|.+++.++|+.+..
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~- 105 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA- 105 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH-
Confidence 4456 66777888899999999999999999999999999999999999999999999999999999999999874442
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 120 YIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEE 161 (281)
Q Consensus 120 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (281)
....+......++...+.+.+..++..
T Consensus 106 ---------------~~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 106 ---------------PWAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred ---------------HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444455556666677777777654
No 103
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.02 E-value=1.2e-08 Score=74.34 Aligned_cols=97 Identities=16% Similarity=-0.013 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc---chhHHHHH
Q 023501 15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV---PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD---SVKGHYLL 88 (281)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~---~~~a~~~l 88 (281)
.++++.|..+-..|+.++|+.+|.+++....+. ..++..+|.++..+|++++|+..+++++.-.|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 568899999999999999999999999986553 578999999999999999999999999999888 88888999
Q ss_pred HHHHHHhcChHHHHHHHHHHHhh
Q 023501 89 GQTLLQRNEYADGIKELEKALNL 111 (281)
Q Consensus 89 a~~~~~~g~~~~A~~~~~kal~~ 111 (281)
+.++...|++++|+..+..++.-
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALAE 104 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999887753
No 104
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.02 E-value=7.6e-09 Score=78.69 Aligned_cols=97 Identities=20% Similarity=0.223 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHH
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV---PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLL 88 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (281)
-.......+|..++..|+|++|+..|..++...|+. +.+...+|.+++..|+|++|+..++. +.-.+-.+.++..+
T Consensus 46 ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~ 124 (145)
T PF09976_consen 46 YAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELL 124 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHH
Confidence 345667778888888899999999998888877654 45777888888888899988888865 34444556788888
Q ss_pred HHHHHHhcChHHHHHHHHHHH
Q 023501 89 GQTLLQRNEYADGIKELEKAL 109 (281)
Q Consensus 89 a~~~~~~g~~~~A~~~~~kal 109 (281)
|.++...|++++|+..|++++
T Consensus 125 Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 125 GDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHCCCHHHHHHHHHHhC
Confidence 999999999999988888774
No 105
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.00 E-value=1.8e-08 Score=74.68 Aligned_cols=104 Identities=17% Similarity=0.203 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch---hHH
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV---PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV---KGH 85 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~---~a~ 85 (281)
..+..++..|...++.|+|.+|++.|+......|.. ..+...++.+|++.++|++|+..+++-|+++|.++ -++
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 457789999999999999999999999999988874 57889999999999999999999999999999885 588
Q ss_pred HHHHHHHHHhcC---------------hHHHHHHHHHHHhhccCC
Q 023501 86 YLLGQTLLQRNE---------------YADGIKELEKALNLGRGA 115 (281)
Q Consensus 86 ~~la~~~~~~g~---------------~~~A~~~~~kal~~~p~~ 115 (281)
|..|.+++.+.. ..+|...|++.+..-|++
T Consensus 88 Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 88 YMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred HHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 999999999876 788999999999887774
No 106
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.00 E-value=1.5e-08 Score=96.58 Aligned_cols=109 Identities=7% Similarity=-0.118 Sum_probs=91.5
Q ss_pred chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHH
Q 023501 9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLL 88 (281)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (281)
..|..+...+..+...++.|+|..|+..|.++++.+|.++.....++.++...|++++|+..+++++.-+|.+..++..+
T Consensus 29 ~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llal 108 (822)
T PRK14574 29 VNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASA 108 (822)
T ss_pred cCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHH
Confidence 35667889999999999999999999999999999999863333888888899999999999999993334445555555
Q ss_pred HHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501 89 GQTLLQRNEYADGIKELEKALNLGRGAKP 117 (281)
Q Consensus 89 a~~~~~~g~~~~A~~~~~kal~~~p~~~~ 117 (281)
|.++..+|++++|++.|+++++.+|++..
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~ 137 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTNPD 137 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Confidence 88999999999999999999999988533
No 107
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.99 E-value=2.2e-08 Score=87.14 Aligned_cols=111 Identities=21% Similarity=0.234 Sum_probs=104.4
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV 82 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 82 (281)
|...+...|+++..+-..|..++..|+..+|++.+.+++.++|+.+.+..++|++|++.|++.+|+..++..+..+|+++
T Consensus 329 l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp 408 (484)
T COG4783 329 LQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDP 408 (484)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Confidence 44456677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHHhhcc
Q 023501 83 KGHYLLGQTLLQRNEYADGIKELEKALNLGR 113 (281)
Q Consensus 83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p 113 (281)
..|..+|++|..+|+-.+|...+-..+.+..
T Consensus 409 ~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G 439 (484)
T COG4783 409 NGWDLLAQAYAELGNRAEALLARAEGYALAG 439 (484)
T ss_pred hHHHHHHHHHHHhCchHHHHHHHHHHHHhCC
Confidence 9999999999999999999999998888843
No 108
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.96 E-value=5.8e-08 Score=81.71 Aligned_cols=215 Identities=11% Similarity=0.068 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----------chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc------
Q 023501 15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN----------VPIYWTNRALCHLKRNDWTKVEADCRKAIQLD------ 78 (281)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~------ 78 (281)
++...+|..+-+.+||++|+-+..+|.++..+ .....+.++.++.++|..-.|.+.+++|.++.
T Consensus 163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr 242 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR 242 (518)
T ss_pred ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence 45667788888888899988888888877433 23567778889999999999999999998875
Q ss_pred CcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH
Q 023501 79 HDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQS-----LKE 153 (281)
Q Consensus 79 p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~ 153 (281)
+.......-+|.+|...|+.+.|..-|+.|...... +...+++.......++.....+-.++ +.+
T Consensus 243 a~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~----------~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale 312 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMAS----------LGDRMGQVEALDGAAKCLETLRLQNKICNCRALE 312 (518)
T ss_pred HHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh----------hhhhHHHHHHHHHHHHHHHHHHHhhcccccchhH
Confidence 445667788899999999999999999999877433 23333333333333333322222222 222
Q ss_pred HHHHHHHHhhhhhhhh-------hccchh---hhhhHHHHHHHHHHHHHHHhcCcCCCCCCCCcccccCCcccccC-c--
Q 023501 154 ACEAALEEKHVLDISR-------KEGFLD---EASSTHLKQMEALRQVFRKAAEDDTPAEVPDYLCCKITLDIFRD-P-- 220 (281)
Q Consensus 154 ~~~~~l~~~~~~~~~~-------~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~c~i~~~~~~~-p-- 220 (281)
...++++....-..+- +-.... ...+++.....+..+.-. ...+.|..|++..-- |
T Consensus 313 ~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~~-----------e~~L~Cg~CGe~~Glk~e~ 381 (518)
T KOG1941|consen 313 FNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECVE-----------ETELYCGLCGESIGLKNER 381 (518)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH-----------HHhhhhhhhhhhhcCCccc
Confidence 2222222111000000 000000 011122222222111111 235779999876542 2
Q ss_pred -eecCCCcccccchHHhHhccCC-CCCCCCCC
Q 023501 221 -VITPSGVTYERAVILDHLDKVG-KFDPITRE 250 (281)
Q Consensus 221 -v~~~~g~~~~~~~i~~~~~~~~-~~cP~~~~ 250 (281)
..+||.|.|--.|+.+.+.+++ .+||-||+
T Consensus 382 LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 382 LQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred ccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 2489999999999999997664 36999983
No 109
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.96 E-value=3.8e-10 Score=66.11 Aligned_cols=39 Identities=31% Similarity=0.593 Sum_probs=35.1
Q ss_pred ccCCcccccCce-ecCCCcccccchHHhHhc-cCCCCCCCC
Q 023501 210 CKITLDIFRDPV-ITPSGVTYERAVILDHLD-KVGKFDPIT 248 (281)
Q Consensus 210 c~i~~~~~~~pv-~~~~g~~~~~~~i~~~~~-~~~~~cP~~ 248 (281)
|+||.+.+.+|+ +++|||+||..||.+|+. .....||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 799999999999 899999999999999998 444469987
No 110
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.96 E-value=9.4e-09 Score=88.72 Aligned_cols=113 Identities=16% Similarity=0.044 Sum_probs=103.2
Q ss_pred hhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchh
Q 023501 4 EAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVK 83 (281)
Q Consensus 4 ~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 83 (281)
+.+...+.-++.++.+.|+..|..|++++|...|..|+..+..-..+++|.|..+..+|+.++|++.+-+.-.+--++.+
T Consensus 480 d~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~e 559 (840)
T KOG2003|consen 480 DIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAE 559 (840)
T ss_pred HHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHH
Confidence 34555666788899999999999999999999999999999999999999999999999999999999988777778999
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhhccCCC
Q 023501 84 GHYLLGQTLLQRNEYADGIKELEKALNLGRGAK 116 (281)
Q Consensus 84 a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~ 116 (281)
.++.++.+|..+.+..+|++++-++..+.|..+
T Consensus 560 vl~qianiye~led~aqaie~~~q~~slip~dp 592 (840)
T KOG2003|consen 560 VLVQIANIYELLEDPAQAIELLMQANSLIPNDP 592 (840)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCH
Confidence 999999999999999999999999999988733
No 111
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.95 E-value=2.5e-08 Score=80.47 Aligned_cols=110 Identities=12% Similarity=0.162 Sum_probs=101.0
Q ss_pred hhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHH
Q 023501 7 LAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHY 86 (281)
Q Consensus 7 ~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~ 86 (281)
...+|+...+ ...+..++..|+-+.+..+.+++....|.+..+....|..++..|+|..|+..++++..++|+++++|.
T Consensus 60 ~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~ 138 (257)
T COG5010 60 VLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWN 138 (257)
T ss_pred HhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhh
Confidence 3445666677 888999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501 87 LLGQTLLQRNEYADGIKELEKALNLGRGAKP 117 (281)
Q Consensus 87 ~la~~~~~~g~~~~A~~~~~kal~~~p~~~~ 117 (281)
.+|.+|.+.|++++|...|.+++++.|..+.
T Consensus 139 ~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~ 169 (257)
T COG5010 139 LLGAALDQLGRFDEARRAYRQALELAPNEPS 169 (257)
T ss_pred HHHHHHHHccChhHHHHHHHHHHHhccCCch
Confidence 9999999999999999999999999887444
No 112
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.95 E-value=1.3e-07 Score=78.57 Aligned_cols=116 Identities=20% Similarity=0.293 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc-----hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHH
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV-----PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHY 86 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~ 86 (281)
....++..+-.+|-+.++|++||+.-++...+.+.. +.+|+.+|..+....+.+.|...+.+|++.+|+...+-.
T Consensus 139 fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi 218 (389)
T COG2956 139 FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASI 218 (389)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhh
Confidence 344566677788888888899998888888887763 678999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHH
Q 023501 87 LLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAK 133 (281)
Q Consensus 87 ~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~ 133 (281)
.+|.+....|+|..|++.++.+++.+|+ +..++...+..+-
T Consensus 219 ~lG~v~~~~g~y~~AV~~~e~v~eQn~~------yl~evl~~L~~~Y 259 (389)
T COG2956 219 ILGRVELAKGDYQKAVEALERVLEQNPE------YLSEVLEMLYECY 259 (389)
T ss_pred hhhHHHHhccchHHHHHHHHHHHHhChH------HHHHHHHHHHHHH
Confidence 9999999999999999999999999876 4555655555543
No 113
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.95 E-value=5e-10 Score=90.38 Aligned_cols=48 Identities=15% Similarity=0.199 Sum_probs=40.8
Q ss_pred CCcccccCCcccccCc--------eecCCCcccccchHHhHhccCCCCCCCCCCCcC
Q 023501 205 PDYLCCKITLDIFRDP--------VITPSGVTYERAVILDHLDKVGKFDPITREPLR 253 (281)
Q Consensus 205 p~~~~c~i~~~~~~~p--------v~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~ 253 (281)
..+..||||.+.+.+| ++++|||+||+.||.+|+...+ +||+||.++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~-tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKN-TCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCC-CCCCCCCEee
Confidence 3467899999987763 5688999999999999998766 5999999876
No 114
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.92 E-value=2e-08 Score=87.68 Aligned_cols=70 Identities=30% Similarity=0.316 Sum_probs=65.2
Q ss_pred chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHH---HHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 023501 9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIY---WTNRALCHLKRNDWTKVEADCRKAIQLD 78 (281)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~a~~~~~~~~~~~A~~~~~~al~l~ 78 (281)
..|+.+..+.++|..++..|+|++|+..|++|++++|+++.+ |+|+|.||..+|++++|+.++++|+++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 467889999999999999999999999999999999999854 9999999999999999999999999983
No 115
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.91 E-value=6.6e-09 Score=90.60 Aligned_cols=69 Identities=16% Similarity=0.049 Sum_probs=66.2
Q ss_pred hCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhH---HHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501 43 LCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKG---HYLLGQTLLQRNEYADGIKELEKALNL 111 (281)
Q Consensus 43 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a---~~~la~~~~~~g~~~~A~~~~~kal~~ 111 (281)
.+|+++..++|+|.+|+++|+|++|+..|++|++++|++..+ |+++|.+|..+|++++|+.++++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 478899999999999999999999999999999999999865 999999999999999999999999998
No 116
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.91 E-value=2.8e-07 Score=74.08 Aligned_cols=107 Identities=10% Similarity=0.059 Sum_probs=78.4
Q ss_pred chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHH
Q 023501 9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLL 88 (281)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (281)
.-|+..++.+..|..+-..|.|++|+++|+..++-+|+|..++-..-.+...+|+--+|++-+..-++.-+.+.++|..+
T Consensus 81 ~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eL 160 (289)
T KOG3060|consen 81 RFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHEL 160 (289)
T ss_pred hCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34566667777777777888888888888888888888777776666666667776777777777777777777777777
Q ss_pred HHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501 89 GQTLLQRNEYADGIKELEKALNLGRGA 115 (281)
Q Consensus 89 a~~~~~~g~~~~A~~~~~kal~~~p~~ 115 (281)
+++|...|+|++|.-++++.+-+.|.+
T Consensus 161 aeiY~~~~~f~kA~fClEE~ll~~P~n 187 (289)
T KOG3060|consen 161 AEIYLSEGDFEKAAFCLEELLLIQPFN 187 (289)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHcCCCc
Confidence 777777777777777777777776653
No 117
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.91 E-value=8.9e-08 Score=76.92 Aligned_cols=112 Identities=16% Similarity=0.067 Sum_probs=102.5
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV 82 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 82 (281)
++..+..+|.+.-.++..--..-..|+-.+||+....-++..+.|+++|..++.+|+..|+|++|.-.+++.+-+.|.++
T Consensus 109 y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~ 188 (289)
T KOG3060|consen 109 YESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNP 188 (289)
T ss_pred HHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcH
Confidence 45556667888888888888888899999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhc---ChHHHHHHHHHHHhhccC
Q 023501 83 KGHYLLGQTLLQRN---EYADGIKELEKALNLGRG 114 (281)
Q Consensus 83 ~a~~~la~~~~~~g---~~~~A~~~~~kal~~~p~ 114 (281)
-.+.++|++++.+| ++.-|.++|.++++++|.
T Consensus 189 l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~ 223 (289)
T KOG3060|consen 189 LYFQRLAEVLYTQGGAENLELARKYYERALKLNPK 223 (289)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH
Confidence 99999999999988 577899999999999774
No 118
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.89 E-value=2.1e-08 Score=91.29 Aligned_cols=114 Identities=18% Similarity=0.133 Sum_probs=98.4
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhcCHHHHHHHH
Q 023501 2 VLEAGLAGVAKQAEQLRLDGNYYFSKD--------RYGAAIDAYTEAITL--CPNVPIYWTNRALCHLKRNDWTKVEADC 71 (281)
Q Consensus 2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~--------~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~ 71 (281)
++++++..+|+.+.++..++..+.... +...|.....+++.+ +|.++.+|.-+|..+...|++++|...+
T Consensus 364 lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l 443 (517)
T PRK10153 364 LLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAI 443 (517)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 578899999999999998888775542 234566666676664 7778899999999999999999999999
Q ss_pred HHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCC
Q 023501 72 RKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAK 116 (281)
Q Consensus 72 ~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~ 116 (281)
++|+.++| +..+|..+|.++...|++++|+..|.+|+.++|..+
T Consensus 444 ~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 444 NKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred HHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 99999999 578999999999999999999999999999998744
No 119
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.89 E-value=8.8e-10 Score=67.49 Aligned_cols=46 Identities=26% Similarity=0.366 Sum_probs=40.0
Q ss_pred cccccCCcccccCceecCCCcc-cccchHHhHhccCCCCCCCCCCCcC
Q 023501 207 YLCCKITLDIFRDPVITPSGVT-YERAVILDHLDKVGKFDPITREPLR 253 (281)
Q Consensus 207 ~~~c~i~~~~~~~pv~~~~g~~-~~~~~i~~~~~~~~~~cP~~~~~~~ 253 (281)
+..|+||.+...+++++||||. ||..|+.+|+.... .||+||++++
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~-~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKK-KCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTS-BBTTTTBB-S
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCC-CCCcCChhhc
Confidence 4679999999999999999999 99999999998655 5999999876
No 120
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.89 E-value=2.6e-08 Score=78.23 Aligned_cols=106 Identities=15% Similarity=0.164 Sum_probs=102.0
Q ss_pred chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHH
Q 023501 9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLL 88 (281)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (281)
.+.+.|..++++|..|=..|-+.-|..-|++++.+.|+.+.+++.+|.-+...|+|+.|.+.++..+++||.+--++.++
T Consensus 60 ~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR 139 (297)
T COG4785 60 TDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 139 (297)
T ss_pred ChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 89 GQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 89 a~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
|.+++--|++.-|.+.+.+-...+|+
T Consensus 140 gi~~YY~gR~~LAq~d~~~fYQ~D~~ 165 (297)
T COG4785 140 GIALYYGGRYKLAQDDLLAFYQDDPN 165 (297)
T ss_pred ceeeeecCchHhhHHHHHHHHhcCCC
Confidence 99999999999999999999999876
No 121
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.89 E-value=5.4e-10 Score=65.21 Aligned_cols=36 Identities=22% Similarity=0.434 Sum_probs=22.9
Q ss_pred ccCCcccccC----ceecCCCcccccchHHhHhccC---CCCCC
Q 023501 210 CKITLDIFRD----PVITPSGVTYERAVILDHLDKV---GKFDP 246 (281)
Q Consensus 210 c~i~~~~~~~----pv~~~~g~~~~~~~i~~~~~~~---~~~cP 246 (281)
||||.+ |.+ |++++|||+||++||.+++..+ ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 888 9999999999999999999854 22476
No 122
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=2.5e-08 Score=93.80 Aligned_cols=72 Identities=35% Similarity=0.582 Sum_probs=67.2
Q ss_pred CCCCCcccccCCcccccCceecC-CCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHHHHHc
Q 023501 202 AEVPDYLCCKITLDIFRDPVITP-SGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMDKH 274 (281)
Q Consensus 202 ~~~p~~~~c~i~~~~~~~pv~~~-~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~~~~~ 274 (281)
.++|++|..|++..+|.|||++| +|++.||+-|.+|+.+.. ++|.||.+|+.+.+.||..|+..|+.|..++
T Consensus 865 ~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs~~-tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek 937 (943)
T KOG2042|consen 865 GDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLSDC-TDPFNREPLTEDMVSPNEELKAKIRCWIKEK 937 (943)
T ss_pred ccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhcCC-CCccccccCchhhcCCCHHHHHHHHHHHHHh
Confidence 34799999999999999999998 999999999999999777 5999999999999999999999999998765
No 123
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=8.5e-08 Score=84.81 Aligned_cols=185 Identities=15% Similarity=0.091 Sum_probs=103.6
Q ss_pred hchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHH
Q 023501 8 AGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYL 87 (281)
Q Consensus 8 ~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~ 87 (281)
+..|+.+-.|+..|.-|+..|++.+|.++|.++..++|..+.+|...|+.+.-.|.-++|+..+..|-++-|......+.
T Consensus 306 ~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY 385 (611)
T KOG1173|consen 306 DLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY 385 (611)
T ss_pred HhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH
Confidence 34566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHhcChHHHHHHHHHHHhhccCCCCCcc-------hHHHHHHHHHHHHH------------------HHHHHHHH
Q 023501 88 LGQTLLQRNEYADGIKELEKALNLGRGAKPKGY-------IVEDIWQELARAKY------------------LLWEQESS 142 (281)
Q Consensus 88 la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~-------~~~~~~~~l~~~~~------------------~~~~~~~~ 142 (281)
+|.=|..+++++-|.+.|.+|+.++|..+-..- ............+. ....+-..
T Consensus 386 lgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~ 465 (611)
T KOG1173|consen 386 LGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY 465 (611)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence 666666666666666666666666655222100 01111111111111 12233344
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhh-hccchhhhhhHHHHHHHHHHHHH
Q 023501 143 KRSWELQSLKEACEAALEEKHVLDISR-KEGFLDEASSTHLKQMEALRQVF 192 (281)
Q Consensus 143 ~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~ 192 (281)
.+.+++.++....+++|...+..-... ..|.+.-..+..+.++..+.+.+
T Consensus 466 Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 466 RKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 556778888888888887654322221 12333445555555555555444
No 124
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.88 E-value=6e-10 Score=69.45 Aligned_cols=44 Identities=39% Similarity=0.599 Sum_probs=31.1
Q ss_pred CcccccCCcccccCcee-cCCCcccccchHHhHhccCC-CCCCCCC
Q 023501 206 DYLCCKITLDIFRDPVI-TPSGVTYERAVILDHLDKVG-KFDPITR 249 (281)
Q Consensus 206 ~~~~c~i~~~~~~~pv~-~~~g~~~~~~~i~~~~~~~~-~~cP~~~ 249 (281)
..+.|||+...|.+||. +.|||+|++++|.+++..++ ..||+.|
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 35789999999999998 47999999999999994433 3599965
No 125
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.88 E-value=5.5e-08 Score=79.42 Aligned_cols=103 Identities=16% Similarity=0.151 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc---hhHHHH
Q 023501 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV---PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS---VKGHYL 87 (281)
Q Consensus 14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~ 87 (281)
+..+++.|..+++.|+|.+|...|..-+...|++ +.+++++|.+++.+|+|++|...|..+++--|.+ +++++.
T Consensus 141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 4558999999999999999999999999999985 6899999999999999999999999999988765 578999
Q ss_pred HHHHHHHhcChHHHHHHHHHHHhhccCCC
Q 023501 88 LGQTLLQRNEYADGIKELEKALNLGRGAK 116 (281)
Q Consensus 88 la~~~~~~g~~~~A~~~~~kal~~~p~~~ 116 (281)
+|.++..+|+.++|...|.++++..|+..
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 99999999999999999999999988843
No 126
>PRK11906 transcriptional regulator; Provisional
Probab=98.88 E-value=3.4e-08 Score=86.35 Aligned_cols=113 Identities=10% Similarity=-0.063 Sum_probs=102.3
Q ss_pred hhhhhh---hchHHHHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHH
Q 023501 2 VLEAGL---AGVAKQAEQLRLDGNYYFSK---------DRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEA 69 (281)
Q Consensus 2 ~l~~~~---~~~~~~a~~~~~~g~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~ 69 (281)
++.+++ ..+|+.+..+-.++..++.. .+-.+|.....+|++++|.|+.++..+|.++...++++.|..
T Consensus 280 lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~ 359 (458)
T PRK11906 280 IFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHI 359 (458)
T ss_pred HHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHH
Confidence 456677 67788888888888887655 234679999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 70 DCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 70 ~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
.+++|+.++|+++.+++..|.+....|+.++|...++++++++|.
T Consensus 360 ~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 360 LFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred HHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 999999999999999999999999999999999999999999876
No 127
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.87 E-value=3.2e-08 Score=86.44 Aligned_cols=105 Identities=13% Similarity=0.008 Sum_probs=91.9
Q ss_pred chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch----hH
Q 023501 9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV----KG 84 (281)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~----~a 84 (281)
..+.....+..+|..+...|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++...|..+ ..
T Consensus 109 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~ 188 (355)
T cd05804 109 ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHN 188 (355)
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHH
Confidence 34555667778899999999999999999999999999999999999999999999999999999999887432 35
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhhcc
Q 023501 85 HYLLGQTLLQRNEYADGIKELEKALNLGR 113 (281)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~kal~~~p 113 (281)
+..+|.++...|++++|+..|++++...|
T Consensus 189 ~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 189 WWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 66899999999999999999999976654
No 128
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.87 E-value=6.4e-09 Score=69.18 Aligned_cols=60 Identities=23% Similarity=0.370 Sum_probs=57.8
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 55 ALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 55 a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
..+|...++|++|+..+++++.++|+++.+++.+|.++..+|++.+|+..++++++.+|+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 567899999999999999999999999999999999999999999999999999999886
No 129
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.86 E-value=5.2e-08 Score=75.98 Aligned_cols=95 Identities=12% Similarity=0.129 Sum_probs=80.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc---hhHHHHHHHHHHHhc
Q 023501 22 NYYFSKDRYGAAIDAYTEAITLCPNV--PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS---VKGHYLLGQTLLQRN 96 (281)
Q Consensus 22 ~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~la~~~~~~g 96 (281)
+.+|-.+.|..+...+...+..++.+ +.++.++|.++...|++++|+..+++++.+.|+. +.+++.+|.++...|
T Consensus 7 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g 86 (168)
T CHL00033 7 NDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG 86 (168)
T ss_pred cccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC
Confidence 34555666888888886666666655 6788999999999999999999999999997763 458999999999999
Q ss_pred ChHHHHHHHHHHHhhccCCC
Q 023501 97 EYADGIKELEKALNLGRGAK 116 (281)
Q Consensus 97 ~~~~A~~~~~kal~~~p~~~ 116 (281)
++++|+..+++++.+.|...
T Consensus 87 ~~~eA~~~~~~Al~~~~~~~ 106 (168)
T CHL00033 87 EHTKALEYYFQALERNPFLP 106 (168)
T ss_pred CHHHHHHHHHHHHHhCcCcH
Confidence 99999999999999977643
No 130
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.85 E-value=1.3e-07 Score=85.85 Aligned_cols=102 Identities=13% Similarity=0.155 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHH
Q 023501 13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTL 92 (281)
Q Consensus 13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~ 92 (281)
++.+....|.-.+..++|++|.++++.+++++|-....|+++|.|..++++++.|.++|.+++.++|++..+|.+++.+|
T Consensus 484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ay 563 (777)
T KOG1128|consen 484 SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAY 563 (777)
T ss_pred hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHH
Confidence 45556666777788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcChHHHHHHHHHHHhhccC
Q 023501 93 LQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 93 ~~~g~~~~A~~~~~kal~~~p~ 114 (281)
+.+|+-.+|...+.+|++.+-+
T Consensus 564 i~~~~k~ra~~~l~EAlKcn~~ 585 (777)
T KOG1128|consen 564 IRLKKKKRAFRKLKEALKCNYQ 585 (777)
T ss_pred HHHhhhHHHHHHHHHHhhcCCC
Confidence 9999999999999999998644
No 131
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=5.3e-08 Score=83.23 Aligned_cols=100 Identities=17% Similarity=0.147 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHH
Q 023501 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLL 93 (281)
Q Consensus 14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~ 93 (281)
...+.+++..+.+.++|.+|+...+++|.++|+|..+++.+|.++..+|+|+.|+.++++|++++|.|-.+...+..+..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HhcChHHH-HHHHHHHHhhcc
Q 023501 94 QRNEYADG-IKELEKALNLGR 113 (281)
Q Consensus 94 ~~g~~~~A-~~~~~kal~~~p 113 (281)
...++.+. .+.|.+.+...+
T Consensus 337 k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHHHhhccc
Confidence 87776655 677888887644
No 132
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.84 E-value=1.3e-08 Score=68.63 Aligned_cols=67 Identities=19% Similarity=0.292 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CC----CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 023501 11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL---CP----NVPIYWTNRALCHLKRNDWTKVEADCRKAIQL 77 (281)
Q Consensus 11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 77 (281)
|..+..+..+|..++..|+|++|+.+|++++.+ .+ .-+.++.++|.++..+|++++|+..+++|+++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344555566666666666666666666665544 11 11344555555555555555555555555443
No 133
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.83 E-value=1.1e-07 Score=90.94 Aligned_cols=112 Identities=12% Similarity=-0.068 Sum_probs=94.5
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV 82 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 82 (281)
|.+++...|..+.....+...+...|++++|+.++++++.-.|........+|.++..+|+|++|+..++++++.+|+++
T Consensus 57 L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~ 136 (822)
T PRK14574 57 LQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNP 136 (822)
T ss_pred HHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence 55666667776534348888888899999999999999943444455555558899999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 83 KGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
.+++.++.++...++.++|+..+.++...+|.
T Consensus 137 ~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~ 168 (822)
T PRK14574 137 DLISGMIMTQADAGRGGVVLKQATELAERDPT 168 (822)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc
Confidence 99999999999999999999999999999776
No 134
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.82 E-value=5.4e-08 Score=85.13 Aligned_cols=95 Identities=18% Similarity=0.222 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHH
Q 023501 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLL 93 (281)
Q Consensus 14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~ 93 (281)
+++...++..++..++..+|+..+.+++...|.++.++...|..++..++++.|+..+++|+.+.|...+.|+.||.+|.
T Consensus 200 pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi 279 (395)
T PF09295_consen 200 PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYI 279 (395)
T ss_pred CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 45666789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcChHHHHHHHHHH
Q 023501 94 QRNEYADGIKELEKA 108 (281)
Q Consensus 94 ~~g~~~~A~~~~~ka 108 (281)
.+|++++|+..++.+
T Consensus 280 ~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 280 QLGDFENALLALNSC 294 (395)
T ss_pred hcCCHHHHHHHHhcC
Confidence 999999999776633
No 135
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.82 E-value=1.7e-07 Score=84.29 Aligned_cols=149 Identities=23% Similarity=0.259 Sum_probs=116.9
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc---
Q 023501 10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL--------CPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD--- 78 (281)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~--- 78 (281)
.+.-+..++.+|..|...++|.+|+..|.+|+.+ .|.-+.++.|+|.+|.+.|+|++|..+|++|+++-
T Consensus 237 hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~ 316 (508)
T KOG1840|consen 237 HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL 316 (508)
T ss_pred CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh
Confidence 4556677778999999999999999999999977 44567899999999999999999999999999874
Q ss_pred -----CcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 79 -----HDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG-AKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLK 152 (281)
Q Consensus 79 -----p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 152 (281)
|.-...+..++.++..++++++|+.++.+++++.-+ ++..++....+...++.. ....++++++.
T Consensus 317 ~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l---------~~~~gk~~ea~ 387 (508)
T KOG1840|consen 317 LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAEL---------YLKMGKYKEAE 387 (508)
T ss_pred hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH---------HHHhcchhHHH
Confidence 334667888999999999999999999999988542 223333444454444443 44567888888
Q ss_pred HHHHHHHHHhhhhhh
Q 023501 153 EACEAALEEKHVLDI 167 (281)
Q Consensus 153 ~~~~~~l~~~~~~~~ 167 (281)
+.+.+++...+....
T Consensus 388 ~~~k~ai~~~~~~~~ 402 (508)
T KOG1840|consen 388 ELYKKAIQILRELLG 402 (508)
T ss_pred HHHHHHHHHHHhccc
Confidence 888888876554443
No 136
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.81 E-value=5.6e-08 Score=90.67 Aligned_cols=115 Identities=14% Similarity=0.138 Sum_probs=104.7
Q ss_pred hhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc--Ccc
Q 023501 4 EAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD--HDS 81 (281)
Q Consensus 4 ~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~--p~~ 81 (281)
.+.++.+|.+..+..-+|.++...|++.+|+..|.++.+-..+++.+|.|+|+||+.+|+|-.|++.|+.+++.- .++
T Consensus 636 ~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~ 715 (1018)
T KOG2002|consen 636 GKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNR 715 (1018)
T ss_pred HHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 456677889999999999999999999999999999998888889999999999999999999999999999764 357
Q ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCC
Q 023501 82 VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPK 118 (281)
Q Consensus 82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~ 118 (281)
...+..||.+++..|.+.+|..++.+|+.+.|.+...
T Consensus 716 ~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v 752 (1018)
T KOG2002|consen 716 SEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSV 752 (1018)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchH
Confidence 8899999999999999999999999999998885553
No 137
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.80 E-value=2.4e-07 Score=71.01 Aligned_cols=85 Identities=13% Similarity=0.113 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC----------HHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcC--
Q 023501 30 YGAAIDAYTEAITLCPNVPIYWTNRALCHLKRND----------WTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNE-- 97 (281)
Q Consensus 30 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~-- 97 (281)
|+.|.+.+...+..+|.|+..+++=|.+++.+.+ +++|+.=+++||.++|+...+++.+|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 7889999999999999999999999999888754 5778889999999999999999999999999874
Q ss_pred ---------hHHHHHHHHHHHhhccC
Q 023501 98 ---------YADGIKELEKALNLGRG 114 (281)
Q Consensus 98 ---------~~~A~~~~~kal~~~p~ 114 (281)
|++|..+|++|...+|+
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ 112 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPN 112 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 78999999999999887
No 138
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.79 E-value=9.9e-08 Score=83.37 Aligned_cols=102 Identities=13% Similarity=0.152 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchH-------------------------------------HHHHHH
Q 023501 13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPI-------------------------------------YWTNRA 55 (281)
Q Consensus 13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-------------------------------------~~~~~a 55 (281)
..+.....|..++..|++++|+..+.++++.+|++.. .+..+|
T Consensus 42 ~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a 121 (355)
T cd05804 42 ERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLA 121 (355)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHH
Confidence 4455666778888888888888888887777776543 334566
Q ss_pred HHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 56 LCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 56 ~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
.++...|++++|+..++++++++|+++.++..+|.++...|++++|+..+.+++...|.
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC 180 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence 78888899999999999999999999999999999999999999999999999988765
No 139
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.78 E-value=2.3e-07 Score=67.43 Aligned_cols=104 Identities=17% Similarity=0.184 Sum_probs=80.9
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc---hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHH
Q 023501 48 PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS---VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVED 124 (281)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~ 124 (281)
+..++.+|..+...|++++|+..+.+++...|++ ..+++.+|.++...|++++|+..|++++...|++... ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~----~~ 77 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKA----PD 77 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcc----cH
Confidence 4678899999999999999999999999999876 5799999999999999999999999999998874332 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023501 125 IWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHV 164 (281)
Q Consensus 125 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (281)
+...+. ......++..++...+..+++..|.
T Consensus 78 ~~~~~~---------~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 78 ALLKLG---------MSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHH---------HHHHHhCChHHHHHHHHHHHHHCcC
Confidence 222222 1223456667777778888776543
No 140
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.77 E-value=9.2e-09 Score=85.51 Aligned_cols=63 Identities=19% Similarity=0.269 Sum_probs=46.5
Q ss_pred CcccccCCccc-ccCce----ecCCCcccccchHHhHhccCCCCCCCCCCCcCCCC----CcccHHHHHHHH
Q 023501 206 DYLCCKITLDI-FRDPV----ITPSGVTYERAVILDHLDKVGKFDPITREPLRESQ----LVPNLAIKEAVR 268 (281)
Q Consensus 206 ~~~~c~i~~~~-~~~pv----~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~----~~~n~~l~~~i~ 268 (281)
++..||+|..- ...|- +.+|||+||++||...|..++..||.|+.++.... +.++..+.+.|+
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV~ 73 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKEVD 73 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHHHH
Confidence 34679999862 33442 35899999999999998776657999999988665 666666655443
No 141
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.77 E-value=2.4e-07 Score=63.45 Aligned_cols=65 Identities=25% Similarity=0.334 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 50 YWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
++.++|.++...|++++|+..++++++..|.+..+++.+|.++...|++++|+..+.+++...|.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 66 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD 66 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 57889999999999999999999999999999999999999999999999999999999999766
No 142
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.77 E-value=1.7e-08 Score=68.01 Aligned_cols=67 Identities=18% Similarity=0.309 Sum_probs=58.7
Q ss_pred CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc-------CcchhHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501 45 PNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD-------HDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111 (281)
Q Consensus 45 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-------p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~ 111 (281)
|+-+.++.++|.+|..+|+|++|+..+++|+++. |..+.+++.+|.++..+|++++|++.+++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3446789999999999999999999999999763 234778999999999999999999999999987
No 143
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.76 E-value=2.2e-09 Score=63.82 Aligned_cols=40 Identities=30% Similarity=0.527 Sum_probs=33.6
Q ss_pred cccCCccccc---CceecCCCcccccchHHhHhccCCCCCCCCC
Q 023501 209 CCKITLDIFR---DPVITPSGVTYERAVILDHLDKVGKFDPITR 249 (281)
Q Consensus 209 ~c~i~~~~~~---~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~ 249 (281)
.|+||.+-+. .++.++|||.|+.+||.+|+..+. .||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~-~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNN-SCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSS-B-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCC-cCCccC
Confidence 4899998885 366789999999999999999876 599996
No 144
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.76 E-value=9.2e-07 Score=78.63 Aligned_cols=98 Identities=14% Similarity=0.092 Sum_probs=83.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHH-HHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHh
Q 023501 17 LRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYW-TNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQR 95 (281)
Q Consensus 17 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~ 95 (281)
+...+....+.|+++.|..+|.++.+.+|++.... ...+..+...|++++|+..++++++.+|+++.++..++.+|...
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~ 200 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRT 200 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 33445666999999999999999999999875443 34488999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHHHHHhhccC
Q 023501 96 NEYADGIKELEKALNLGRG 114 (281)
Q Consensus 96 g~~~~A~~~~~kal~~~p~ 114 (281)
|+|++|+..+.+..+..+.
T Consensus 201 gdw~~a~~~l~~l~k~~~~ 219 (398)
T PRK10747 201 GAWSSLLDILPSMAKAHVG 219 (398)
T ss_pred HhHHHHHHHHHHHHHcCCC
Confidence 9999999888888877443
No 145
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.76 E-value=1.4e-08 Score=82.46 Aligned_cols=66 Identities=24% Similarity=0.295 Sum_probs=57.6
Q ss_pred ccccCCcccccCceecC-CCcccccchHHhHhccCCCCCCCCCC-CcCCCCCcccHHHHHHHHHHHHH
Q 023501 208 LCCKITLDIFRDPVITP-SGVTYERAVILDHLDKVGKFDPITRE-PLRESQLVPNLAIKEAVRAYMDK 273 (281)
Q Consensus 208 ~~c~i~~~~~~~pv~~~-~g~~~~~~~i~~~~~~~~~~cP~~~~-~~~~~~~~~n~~l~~~i~~~~~~ 273 (281)
+.||+|+.++++|+-|| |||+||..||+..|......||.|.. .+..+.|.|+...+..|+.+++.
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkk 342 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKK 342 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHH
Confidence 88999999999999885 88999999999987766657999954 46667899999999999999875
No 146
>PRK11906 transcriptional regulator; Provisional
Probab=98.75 E-value=2.8e-07 Score=80.74 Aligned_cols=137 Identities=9% Similarity=-0.063 Sum_probs=107.7
Q ss_pred HHHHHHHHHHhcCC---HHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHh---------cCHHHHHHHHHHHHhhcCc
Q 023501 16 QLRLDGNYYFSKDR---YGAAIDAYTEAI---TLCPNVPIYWTNRALCHLKR---------NDWTKVEADCRKAIQLDHD 80 (281)
Q Consensus 16 ~~~~~g~~~~~~~~---~~~A~~~~~~al---~~~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~l~p~ 80 (281)
-++.+|...+..+. .+.|+.+|++|+ .++|..+.+|..+|.||+.. .+-.+|....++|++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 44667777765554 367999999999 99999999999999999866 1357789999999999999
Q ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 81 SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALE 160 (281)
Q Consensus 81 ~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (281)
++.++..+|.++...|+++.|+..|++|+.++|+.... ....+. ...-.++..++...++++++
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~-------~~~~~~---------~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASL-------YYYRAL---------VHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHH-------HHHHHH---------HHHHcCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999998884332 211111 12223556667777888888
Q ss_pred Hhhhhhhh
Q 023501 161 EKHVLDIS 168 (281)
Q Consensus 161 ~~~~~~~~ 168 (281)
..|.+...
T Consensus 401 LsP~~~~~ 408 (458)
T PRK11906 401 LEPRRRKA 408 (458)
T ss_pred cCchhhHH
Confidence 77766554
No 147
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=5.6e-09 Score=90.23 Aligned_cols=70 Identities=26% Similarity=0.403 Sum_probs=60.1
Q ss_pred CCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHHHHHcCCC
Q 023501 205 PDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMDKHGWA 277 (281)
Q Consensus 205 p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~~~~~~~~ 277 (281)
...+.||||.+.|.+|++++|||+||+.||..++. ....||.|+. ... .+.+|..+..+++.+...+.+.
T Consensus 11 ~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~~-~~~~n~~l~~~~~~~~~~~~~~ 80 (386)
T KOG2177|consen 11 QEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PSR-NLRPNVLLANLVERLRQLRLSR 80 (386)
T ss_pred cccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-chh-ccCccHHHHHHHHHHHhcCCcc
Confidence 46788999999999999999999999999999998 4446999996 333 8889999999999997766543
No 148
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.75 E-value=1e-07 Score=74.64 Aligned_cols=71 Identities=13% Similarity=0.223 Sum_probs=64.4
Q ss_pred CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc---hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501 45 PNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS---VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGA 115 (281)
Q Consensus 45 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~ 115 (281)
+..+.+++++|..+...|++++|+..+++++++.|+. ..+++.+|.++..+|++++|+..+.+++...|..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 105 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ 105 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 3567889999999999999999999999999987753 5799999999999999999999999999997763
No 149
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.74 E-value=4.7e-07 Score=82.57 Aligned_cols=135 Identities=13% Similarity=0.125 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc--------CHHHHHHHHHHHHhh--cC
Q 023501 13 QAEQLRLDGNYYFSKDR---YGAAIDAYTEAITLCPNVPIYWTNRALCHLKRN--------DWTKVEADCRKAIQL--DH 79 (281)
Q Consensus 13 ~a~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~al~l--~p 79 (281)
.|-.++.+|..++..++ +..|+.+|++|++++|+++.+|..++.+|.... ++..+...+.+++.+ +|
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~ 417 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN 417 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence 45667788988887665 789999999999999999999999999886653 345666667776664 78
Q ss_pred cchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 80 DSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAAL 159 (281)
Q Consensus 80 ~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 159 (281)
..+.+|..+|..+...|++++|...+++|+.++|+ .. .....++.....|+.+++...+.+++
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~----------------a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WL----------------NYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HH----------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88899999999999999999999999999999764 11 23333444455677778888888888
Q ss_pred HHhhh
Q 023501 160 EEKHV 164 (281)
Q Consensus 160 ~~~~~ 164 (281)
..+|.
T Consensus 481 ~L~P~ 485 (517)
T PRK10153 481 NLRPG 485 (517)
T ss_pred hcCCC
Confidence 76654
No 150
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.8e-07 Score=79.97 Aligned_cols=111 Identities=21% Similarity=0.216 Sum_probs=67.1
Q ss_pred hhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchh
Q 023501 4 EAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVK 83 (281)
Q Consensus 4 ~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 83 (281)
+++++.++.....+...|+.+...|+.++|+-.|+.|+.+.|.+-.+|.++-.+|+..|.+.+|....+.+++.-|.+++
T Consensus 324 eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~ 403 (564)
T KOG1174|consen 324 EKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSAR 403 (564)
T ss_pred HHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchh
Confidence 45555566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHH-HHHHHh-cChHHHHHHHHHHHhhccC
Q 023501 84 GHYLLG-QTLLQR-NEYADGIKELEKALNLGRG 114 (281)
Q Consensus 84 a~~~la-~~~~~~-g~~~~A~~~~~kal~~~p~ 114 (281)
++..+| .++... .--++|...+++++.+.|+
T Consensus 404 ~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~ 436 (564)
T KOG1174|consen 404 SLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI 436 (564)
T ss_pred hhhhhcceeeccCchhHHHHHHHHHhhhccCCc
Confidence 655554 333222 1235556666666666554
No 151
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.74 E-value=1e-06 Score=79.42 Aligned_cols=106 Identities=14% Similarity=0.098 Sum_probs=94.3
Q ss_pred chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc--
Q 023501 9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL--------CPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD-- 78 (281)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-- 78 (281)
..|....+...+|..|..+|+|+.|+..+..|++. .|.-.....++|..|..+++|.+|+..|++|+.+-
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 46777788888999999999999999999999998 56666777789999999999999999999999864
Q ss_pred ------CcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 79 ------HDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 79 ------p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
|.-+.++.+||.+|...|++++|..++++|+.+...
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~ 315 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK 315 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence 445679999999999999999999999999999543
No 152
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=2.8e-07 Score=78.91 Aligned_cols=106 Identities=13% Similarity=0.155 Sum_probs=91.1
Q ss_pred chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch----------------------------------HHHHHH
Q 023501 9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVP----------------------------------IYWTNR 54 (281)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----------------------------------~~~~~~ 54 (281)
.-+.+...+..+|..++..|++.+|+..|.++.-++|.+. .-|+--
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~ 306 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVH 306 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhh
Confidence 4567888999999999999999999999999999998842 223333
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 55 ALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 55 a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
+...+..++|..|+.+.+++|..+|.+..++...|.++.++|+.++|+-.|+.|..+.|.
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~ 366 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY 366 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchh
Confidence 344455667889999999999999999999999999999999999999999999999776
No 153
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.73 E-value=3.5e-07 Score=87.00 Aligned_cols=155 Identities=11% Similarity=-0.025 Sum_probs=114.1
Q ss_pred hchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch-----
Q 023501 8 AGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV----- 82 (281)
Q Consensus 8 ~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~----- 82 (281)
.-+|.+..++..+...+...+++++|+..+..+++.+|+...+|+.+|..+++.+++.+|... .++.+-+.+.
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v 102 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIV 102 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence 357888999999999999999999999999999999999999999999999999988877666 6666666555
Q ss_pred --------------hHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHH--HHHHHHHHHHH-HHHHHHH
Q 023501 83 --------------KGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQ--ELARAKYLLWE-QESSKRS 145 (281)
Q Consensus 83 --------------~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~--~l~~~~~~~~~-~~~~~~~ 145 (281)
.|++.+|.+|-.+|++++|...|+++++++|++..........+. .+.++...... .......
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~dL~KA~~m~~KAV~~~i~~ 182 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEEDKEKAITYLKKAIYRFIKK 182 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh
Confidence 899999999999999999999999999998875554222222222 22222222221 1222234
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 023501 146 WELQSLKEACEAALEEKHV 164 (281)
Q Consensus 146 ~~~~~~~~~~~~~l~~~~~ 164 (281)
+++.++...-.+.+...++
T Consensus 183 kq~~~~~e~W~k~~~~~~~ 201 (906)
T PRK14720 183 KQYVGIEEIWSKLVHYNSD 201 (906)
T ss_pred hcchHHHHHHHHHHhcCcc
Confidence 5666666666665554443
No 154
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.72 E-value=5.3e-06 Score=63.94 Aligned_cols=100 Identities=19% Similarity=0.258 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc--chhHHHHHHHHH
Q 023501 16 QLRLDGNYYFSKDRYGAAIDAYTEAITL-CPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD--SVKGHYLLGQTL 92 (281)
Q Consensus 16 ~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--~~~a~~~la~~~ 92 (281)
....+|+.+...|++.+|..+|++++.- ..+++.....++++.+..+++..|...+++..+.+|. .+..+..+|.+|
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~l 170 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTL 170 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHH
Confidence 4567899999999999999999999864 5679999999999999999999999999999999985 588999999999
Q ss_pred HHhcChHHHHHHHHHHHhhccCC
Q 023501 93 LQRNEYADGIKELEKALNLGRGA 115 (281)
Q Consensus 93 ~~~g~~~~A~~~~~kal~~~p~~ 115 (281)
..+|++.+|...|+.+++..|++
T Consensus 171 aa~g~~a~Aesafe~a~~~ypg~ 193 (251)
T COG4700 171 AAQGKYADAESAFEVAISYYPGP 193 (251)
T ss_pred HhcCCchhHHHHHHHHHHhCCCH
Confidence 99999999999999999998873
No 155
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.72 E-value=5e-07 Score=85.98 Aligned_cols=107 Identities=17% Similarity=0.086 Sum_probs=95.2
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch-------------------HHHHHHHHHHHHhcC
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVP-------------------IYWTNRALCHLKRND 63 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-------------------~~~~~~a~~~~~~~~ 63 (281)
++.+....|+....+..+|..+++.+++.+|.-. .++...+.+. .+++.+|.||-++|+
T Consensus 54 ~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~ 131 (906)
T PRK14720 54 CEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNE 131 (906)
T ss_pred HHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCC
Confidence 4556777888889999999999999998877766 6666666665 899999999999999
Q ss_pred HHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhc
Q 023501 64 WTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLG 112 (281)
Q Consensus 64 ~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~ 112 (281)
+++|...++++++++|+++.++.++|..|... +.++|++.+.+|+...
T Consensus 132 ~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 132 NKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred hHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 9999999999998773
No 156
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.71 E-value=8.8e-08 Score=62.65 Aligned_cols=57 Identities=26% Similarity=0.372 Sum_probs=53.4
Q ss_pred HHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 58 HLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 58 ~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
+++.|+|++|+..+++++..+|++..+++.+|.+++..|++++|...+.+++..+|+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 357899999999999999999999999999999999999999999999999999876
No 157
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.71 E-value=9.1e-07 Score=73.59 Aligned_cols=138 Identities=15% Similarity=0.099 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc-----hhHH
Q 023501 11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS-----VKGH 85 (281)
Q Consensus 11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-----~~a~ 85 (281)
.....++..+|..|+..|-++.|...|...++....-..+...+..+|.+..+|++|++..++..++.+.. +..|
T Consensus 104 ~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfy 183 (389)
T COG2956 104 EQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFY 183 (389)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHH
Confidence 44566677777777777777777777777766555556677777888888888888888888888887754 4566
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023501 86 YLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHV 164 (281)
Q Consensus 86 ~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (281)
..+|+.+....+.+.|...+.+|++-+|..... .+..++-....+++..+.+.++.++++++.
T Consensus 184 CELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRA----------------si~lG~v~~~~g~y~~AV~~~e~v~eQn~~ 246 (389)
T COG2956 184 CELAQQALASSDVDRARELLKKALQADKKCVRA----------------SIILGRVELAKGDYQKAVEALERVLEQNPE 246 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhhCccceeh----------------hhhhhHHHHhccchHHHHHHHHHHHHhChH
Confidence 777888888888888888888888887764332 222333344445555555555555555544
No 158
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.69 E-value=1.8e-06 Score=77.14 Aligned_cols=95 Identities=12% Similarity=0.048 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch-HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHh
Q 023501 17 LRLDGNYYFSKDRYGAAIDAYTEAITLCPNVP-IYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQR 95 (281)
Q Consensus 17 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~ 95 (281)
+...|..+.+.|+++.|..+|.++.+..|++. .+...++..+...|+++.|...+++.++..|+++.++..++.++...
T Consensus 121 ~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~ 200 (409)
T TIGR00540 121 LIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRS 200 (409)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 33444445555555555555555555444443 23333445555555555555555555555555555555555555555
Q ss_pred cChHHHHHHHHHHHhh
Q 023501 96 NEYADGIKELEKALNL 111 (281)
Q Consensus 96 g~~~~A~~~~~kal~~ 111 (281)
|+|++|...+.+.++.
T Consensus 201 ~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 201 GAWQALDDIIDNMAKA 216 (409)
T ss_pred hhHHHHHHHHHHHHHc
Confidence 5555555555544444
No 159
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.66 E-value=3.2e-06 Score=76.85 Aligned_cols=141 Identities=15% Similarity=0.068 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHH
Q 023501 13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTL 92 (281)
Q Consensus 13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~ 92 (281)
....++.++.-+-..|++++|+.+.++||+..|+.+.+|...|.++...|++.+|...++.|-.+|+.+--.-...+..+
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999999999888888889999
Q ss_pred HHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 93 LQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALE 160 (281)
Q Consensus 93 ~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (281)
+..|+.++|.+.+..-..-+-++.......+.+|-.+.. ++...|.+.+..+.+.+....+
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~-------a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETEC-------AEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHH-------HHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999876544422212221223334443333 3344455666666555555444
No 160
>PHA02926 zinc finger-like protein; Provisional
Probab=98.66 E-value=1.3e-08 Score=79.61 Aligned_cols=49 Identities=14% Similarity=0.149 Sum_probs=39.4
Q ss_pred CCcccccCCcccccC---------ceecCCCcccccchHHhHhccC-----CCCCCCCCCCcC
Q 023501 205 PDYLCCKITLDIFRD---------PVITPSGVTYERAVILDHLDKV-----GKFDPITREPLR 253 (281)
Q Consensus 205 p~~~~c~i~~~~~~~---------pv~~~~g~~~~~~~i~~~~~~~-----~~~cP~~~~~~~ 253 (281)
..+..|+||.+...+ +++.+|+|+||..||.+|-... ...||+||..+.
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 346789999987643 5778999999999999998743 124999999876
No 161
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=8.2e-09 Score=82.67 Aligned_cols=53 Identities=21% Similarity=0.258 Sum_probs=44.2
Q ss_pred CCcccccCCcccccCceecCCCcccccchHHh-HhccCCCCCCCCCCCcCCCCC
Q 023501 205 PDYLCCKITLDIFRDPVITPSGVTYERAVILD-HLDKVGKFDPITREPLRESQL 257 (281)
Q Consensus 205 p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~-~~~~~~~~cP~~~~~~~~~~~ 257 (281)
..++.|+||.+.+..|+.++|||.||..||.. |-.....+||+||....+..+
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 36899999999999999999999999999999 544444459999987765543
No 162
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=9.8e-07 Score=73.04 Aligned_cols=118 Identities=15% Similarity=0.051 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcC---hHHHHHHHH
Q 023501 30 YGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNE---YADGIKELE 106 (281)
Q Consensus 30 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~---~~~A~~~~~ 106 (281)
.+..+.-++.-+..+|+|+.-|..+|.+|+.+|++..|...|.+|+++.|+++..+..+|++++...+ -.++...+.
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 45677778888999999999999999999999999999999999999999999999999999988764 578899999
Q ss_pred HHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023501 107 KALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKH 163 (281)
Q Consensus 107 kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (281)
+++.++|.+.. .....+......+++.++....+..+...+
T Consensus 218 ~al~~D~~~ir----------------al~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 218 QALALDPANIR----------------ALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHhcCCccHH----------------HHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 99999887322 233334455567888889888888887644
No 163
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.65 E-value=2.1e-08 Score=59.74 Aligned_cols=44 Identities=34% Similarity=0.629 Sum_probs=36.7
Q ss_pred cccCCcccccCceec-CCCcccccchHHhHhccCCCCCCCCCCCc
Q 023501 209 CCKITLDIFRDPVIT-PSGVTYERAVILDHLDKVGKFDPITREPL 252 (281)
Q Consensus 209 ~c~i~~~~~~~pv~~-~~g~~~~~~~i~~~~~~~~~~cP~~~~~~ 252 (281)
.|+||.+.+.+|+.+ +|||.||..|+..|+..+...||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 489999999888865 49999999999999987444699998753
No 164
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.64 E-value=3e-06 Score=75.71 Aligned_cols=118 Identities=14% Similarity=0.136 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch-hHHHHHH
Q 023501 11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV-KGHYLLG 89 (281)
Q Consensus 11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~-~a~~~la 89 (281)
...+......|...+..|+|+.|.+...++.+..|+....+...|.++...|+++.|..++.++.+..|++. .+...++
T Consensus 81 ~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a 160 (409)
T TIGR00540 81 RRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIART 160 (409)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHH
Confidence 345777788999999999999999999999999999888889899999999999999999999999999885 4666679
Q ss_pred HHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHH
Q 023501 90 QTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQE 128 (281)
Q Consensus 90 ~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~ 128 (281)
.++...|+++.|...+++.++..|++.........+...
T Consensus 161 ~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~ 199 (409)
T TIGR00540 161 RILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIR 199 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999988855443333333333
No 165
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.3e-08 Score=88.82 Aligned_cols=70 Identities=26% Similarity=0.317 Sum_probs=54.2
Q ss_pred CcccccCCcccccCceecCCCcccccchHHhHhccC----CCCCCCCCCCcCCCCCcccH----HHHHHHHHHHHHcC
Q 023501 206 DYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKV----GKFDPITREPLRESQLVPNL----AIKEAVRAYMDKHG 275 (281)
Q Consensus 206 ~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~----~~~cP~~~~~~~~~~~~~n~----~l~~~i~~~~~~~~ 275 (281)
.+..||||+....-|+.|.|||.||-.||.++|... ...||+|+..+..++|.|-+ .-+..++..+..||
T Consensus 185 t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng 262 (513)
T KOG2164|consen 185 TDMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNG 262 (513)
T ss_pred cCCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccC
Confidence 378899999999999999999999999999998754 23599999999887665543 33444555555554
No 166
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.64 E-value=2e-07 Score=84.70 Aligned_cols=114 Identities=18% Similarity=0.174 Sum_probs=106.2
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV 82 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 82 (281)
++......|-....|+..|..+++.++++.|.+.|+.++.++|++...|+|++.+|.++++-.+|...+.+|++-+-.+.
T Consensus 508 le~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w 587 (777)
T KOG1128|consen 508 LERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHW 587 (777)
T ss_pred HHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCC
Confidence 45566677888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCC
Q 023501 83 KGHYLLGQTLLQRNEYADGIKELEKALNLGRGAK 116 (281)
Q Consensus 83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~ 116 (281)
+.|-+...+....|.+++|++.|.+.+.+.....
T Consensus 588 ~iWENymlvsvdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 588 QIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred eeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence 9999999999999999999999999998854433
No 167
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=2.2e-08 Score=86.88 Aligned_cols=73 Identities=22% Similarity=0.391 Sum_probs=59.8
Q ss_pred CCCCCCCCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCC-----CCcccHHHHHHHHHHHH
Q 023501 199 DTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRES-----QLVPNLAIKEAVRAYMD 272 (281)
Q Consensus 199 ~~~~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~-----~~~~n~~l~~~i~~~~~ 272 (281)
..+..++.+|.|.+|..++..||+|||||+||..||.+.++.... ||.|+.++... ...+|..+...|..|+.
T Consensus 76 s~~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~-cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~ 153 (398)
T KOG4159|consen 76 SGPEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETE-CPLCRDELVELPALEQALSLNRLLCKLITKFLE 153 (398)
T ss_pred ccCccccchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCC-CcccccccccchHHHHHHHHHHHHHHHHHHhhh
Confidence 446666899999999999999999999999999999999987774 99999887631 23346667788887754
No 168
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.62 E-value=2.7e-06 Score=64.56 Aligned_cols=96 Identities=19% Similarity=0.192 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc---hhHH
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV---PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS---VKGH 85 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~ 85 (281)
..+...+......+..+++..+...++..+...|+. ..+...+|.+++..|++++|...++.++...|+. ..+.
T Consensus 9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~ 88 (145)
T PF09976_consen 9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLAR 88 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 456667777777788999999999999999999987 5778889999999999999999999999987654 4688
Q ss_pred HHHHHHHHHhcChHHHHHHHHH
Q 023501 86 YLLGQTLLQRNEYADGIKELEK 107 (281)
Q Consensus 86 ~~la~~~~~~g~~~~A~~~~~k 107 (281)
+++|.+++..|++++|+..+..
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHh
Confidence 9999999999999999999865
No 169
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.61 E-value=8.6e-08 Score=65.63 Aligned_cols=61 Identities=25% Similarity=0.322 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 023501 13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKA 74 (281)
Q Consensus 13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 74 (281)
....+..+|..+++.|+|++|+..+++ ...+|.+....+.+|.|++++|+|++|+..+++|
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 566777899999999999999999999 8888988888889999999999999999999875
No 170
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.61 E-value=7.6e-07 Score=83.56 Aligned_cols=97 Identities=15% Similarity=0.185 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHH
Q 023501 15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQ 94 (281)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~ 94 (281)
..|..+|-.+...+++..|+..|+.|++.+|.|..+|..+|.+|...|.|..|++.+.+|..++|.+.-+.|..+.+...
T Consensus 563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd 642 (1238)
T KOG1127|consen 563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD 642 (1238)
T ss_pred hhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH
Confidence 34556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcChHHHHHHHHHHHhh
Q 023501 95 RNEYADGIKELEKALNL 111 (281)
Q Consensus 95 ~g~~~~A~~~~~kal~~ 111 (281)
+|+|.+|+..+...+.-
T Consensus 643 ~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 643 NGKYKEALDALGLIIYA 659 (1238)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 99999999999888766
No 171
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.61 E-value=2e-06 Score=77.59 Aligned_cols=114 Identities=15% Similarity=0.074 Sum_probs=85.0
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV 82 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 82 (281)
|+.+.+..|.+-+.+...-...+...+|+.|..+|.+|....|+ ..+|..-+....-+++.++|++.++++++.-|++.
T Consensus 607 l~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~ 685 (913)
T KOG0495|consen 607 LDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFH 685 (913)
T ss_pred HHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchH
Confidence 44444444444445544445555555555555555555554443 45666677777788899999999999999999999
Q ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501 83 KGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP 117 (281)
Q Consensus 83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~ 117 (281)
+.|..+|+++.++++.+.|...|...++.+|...+
T Consensus 686 Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ip 720 (913)
T KOG0495|consen 686 KLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIP 720 (913)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCch
Confidence 99999999999999999999999999999998444
No 172
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=1.2e-07 Score=84.59 Aligned_cols=74 Identities=31% Similarity=0.550 Sum_probs=67.8
Q ss_pred CCCCCCCCcccccCCcccccCceecC-CCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHHHHH
Q 023501 199 DTPAEVPDYLCCKITLDIFRDPVITP-SGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMDK 273 (281)
Q Consensus 199 ~~~~~~p~~~~c~i~~~~~~~pv~~~-~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~~~~ 273 (281)
+.-.++|++|..|++..+|+|||++| +|-+.+|+.|..|+.+.+ ++|..|.|++.+++.||..|++.|..|...
T Consensus 846 ED~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahllsd~-tDPFNRmPLtlddVtpn~eLrekIn~f~k~ 920 (929)
T COG5113 846 EDMGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLSDG-TDPFNRMPLTLDDVTPNAELREKINRFYKC 920 (929)
T ss_pred hhccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhcCC-CCccccCCCchhhcCCCHHHHHHHHHHHhc
Confidence 33678999999999999999999877 889999999999999887 699999999999999999999999999654
No 173
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=7.7e-08 Score=80.00 Aligned_cols=109 Identities=15% Similarity=0.075 Sum_probs=68.6
Q ss_pred hhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchh
Q 023501 4 EAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVK 83 (281)
Q Consensus 4 ~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 83 (281)
.+..+.-|.+...+-..+.++-..+++++|+++|..+++.+|.+.++....|.-|+--++.+-|+.+|++.+.+.-.+++
T Consensus 280 ~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~spe 359 (478)
T KOG1129|consen 280 GEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPE 359 (478)
T ss_pred hhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChH
Confidence 34445556666666666666666666777777777776666666655555555566666666666666666666666666
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhhc
Q 023501 84 GHYLLGQTLLQRNEYADGIKELEKALNLG 112 (281)
Q Consensus 84 a~~~la~~~~~~g~~~~A~~~~~kal~~~ 112 (281)
.+.++|.+.+.-++++-++..|++++...
T Consensus 360 Lf~NigLCC~yaqQ~D~~L~sf~RAlsta 388 (478)
T KOG1129|consen 360 LFCNIGLCCLYAQQIDLVLPSFQRALSTA 388 (478)
T ss_pred HHhhHHHHHHhhcchhhhHHHHHHHHhhc
Confidence 66666666666666666666666666554
No 174
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=6e-06 Score=75.98 Aligned_cols=54 Identities=15% Similarity=0.285 Sum_probs=49.2
Q ss_pred CcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcc
Q 023501 206 DYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVP 259 (281)
Q Consensus 206 ~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~ 259 (281)
.-+.||.|..-.+|-|++.|||.||-.||..-+......||.|+.+|...++.|
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 358899999999999999999999999999999887778999999999887765
No 175
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.60 E-value=1.4e-06 Score=78.48 Aligned_cols=111 Identities=14% Similarity=0.156 Sum_probs=87.8
Q ss_pred hhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchh
Q 023501 4 EAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVK 83 (281)
Q Consensus 4 ~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 83 (281)
+......|+..+.+...|..+...|+-++|..+...++..++.+..+|..+|..+..-++|++|++.|+.|++++|+|..
T Consensus 31 ~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~q 110 (700)
T KOG1156|consen 31 KQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQ 110 (700)
T ss_pred HHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHH
Confidence 33444566777777788888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 84 GHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 84 a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
.+.-++....++|+++.....-.+.+++.|.
T Consensus 111 ilrDlslLQ~QmRd~~~~~~tr~~LLql~~~ 141 (700)
T KOG1156|consen 111 ILRDLSLLQIQMRDYEGYLETRNQLLQLRPS 141 (700)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Confidence 8888888888888888888877777777665
No 176
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.57 E-value=4.2e-08 Score=58.18 Aligned_cols=40 Identities=23% Similarity=0.419 Sum_probs=33.2
Q ss_pred ccCCcccc---cCceecCCCcccccchHHhHhccCCCCCCCCCC
Q 023501 210 CKITLDIF---RDPVITPSGVTYERAVILDHLDKVGKFDPITRE 250 (281)
Q Consensus 210 c~i~~~~~---~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~ 250 (281)
|++|.+.+ ..|++++|||+||..||..... ....||+|++
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~-~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHIFCEKCLKKLKG-KSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccCCHHHHHHHHhhcC-CCCCCcCCCC
Confidence 78888888 3588999999999999999983 3336999984
No 177
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.57 E-value=4.4e-08 Score=56.28 Aligned_cols=39 Identities=36% Similarity=0.624 Sum_probs=34.2
Q ss_pred ccCCcccccCceecCCCcccccchHHhHhccCCCCCCCC
Q 023501 210 CKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPIT 248 (281)
Q Consensus 210 c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~ 248 (281)
|+||.+...+|++++|||.||..|+..|+......||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 789999999999999999999999999998444459986
No 178
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.56 E-value=3.5e-05 Score=62.68 Aligned_cols=151 Identities=15% Similarity=0.027 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch---hHHH
Q 023501 13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV---PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV---KGHY 86 (281)
Q Consensus 13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~---~a~~ 86 (281)
.+..|+..|...++.|+|.+|+..|.......|.. ..+...++.++++.++|++|+..+++-+++.|.++ -++|
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 57889999999999999999999999999998875 47888899999999999999999999999998775 4778
Q ss_pred HHHHHHHHhc--------ChHHHHHHHHHHHhhccCCCCCcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 87 LLGQTLLQRN--------EYADGIKELEKALNLGRGAKPKGYIVEDI-WQELARAKYLLWEQESSKRSWELQSLKEACEA 157 (281)
Q Consensus 87 ~la~~~~~~g--------~~~~A~~~~~kal~~~p~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (281)
..|.+++..= --.+|+..|.+.+.--|++.-.......+ ......+...+..++-..+++.+..+...++.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 8888876542 24678888999998888744332111111 22233344455566666777888888888888
Q ss_pred HHHHhh
Q 023501 158 ALEEKH 163 (281)
Q Consensus 158 ~l~~~~ 163 (281)
+++..+
T Consensus 193 v~e~y~ 198 (254)
T COG4105 193 VLENYP 198 (254)
T ss_pred HHhccc
Confidence 888643
No 179
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.56 E-value=3.1e-06 Score=75.32 Aligned_cols=102 Identities=16% Similarity=0.064 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHH
Q 023501 10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLG 89 (281)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la 89 (281)
.++.+......|..+...|+.++|...+.+++.. |.++.+....+.+ ..+++++++..+++.++..|+++..++.+|
T Consensus 259 ~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lg 335 (398)
T PRK10747 259 TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLG 335 (398)
T ss_pred HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 3456778888999999999999999999999995 4455544444443 459999999999999999999999999999
Q ss_pred HHHHHhcChHHHHHHHHHHHhhccC
Q 023501 90 QTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 90 ~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
.++...|+|++|...|+++++..|+
T Consensus 336 rl~~~~~~~~~A~~~le~al~~~P~ 360 (398)
T PRK10747 336 QLLMKHGEWQEASLAFRAALKQRPD 360 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999876
No 180
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.55 E-value=8.7e-06 Score=73.45 Aligned_cols=108 Identities=17% Similarity=0.143 Sum_probs=99.9
Q ss_pred hhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhH
Q 023501 5 AGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKG 84 (281)
Q Consensus 5 ~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a 84 (281)
.+...++...--|..+|..+-.-++|.+||++|+.|+...|+|..+|..++....++++|+.....-.+.+++.|..-..
T Consensus 66 ~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~ 145 (700)
T KOG1156|consen 66 LGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRAS 145 (700)
T ss_pred HHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHH
Confidence 34555666677789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhhc
Q 023501 85 HYLLGQTLLQRNEYADGIKELEKALNLG 112 (281)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~kal~~~ 112 (281)
|+-.+.++...|++..|...++...+..
T Consensus 146 w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 146 WIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999988887775
No 181
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.53 E-value=8.7e-07 Score=75.99 Aligned_cols=139 Identities=14% Similarity=0.156 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc----Ccc
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN------VPIYWTNRALCHLKRNDWTKVEADCRKAIQLD----HDS 81 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~----p~~ 81 (281)
.+...+-++|+.||-.|+|++||.+-..-+.+... .-.++.|+|+||.-+|+++.|++.|.+.+.+. ...
T Consensus 193 aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~ 272 (639)
T KOG1130|consen 193 AQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRT 272 (639)
T ss_pred hhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchh
Confidence 34567889999999999999999988777666322 34689999999999999999999999876543 333
Q ss_pred --hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 82 --VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAAL 159 (281)
Q Consensus 82 --~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 159 (281)
+...|.+|..|.-+.++.+||.++.+-+++. .++...++..+.-...+......+....+..+.+..+
T Consensus 273 vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIA----------qeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 273 VEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIA----------QELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH----------HHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4566999999999999999999999999883 3455555555554444555555555555555555544
Q ss_pred H
Q 023501 160 E 160 (281)
Q Consensus 160 ~ 160 (281)
+
T Consensus 343 ~ 343 (639)
T KOG1130|consen 343 R 343 (639)
T ss_pred H
Confidence 4
No 182
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.53 E-value=2.6e-06 Score=71.04 Aligned_cols=106 Identities=11% Similarity=0.031 Sum_probs=83.5
Q ss_pred hHHHHHHHHHH-HHhcCHHHHHHHHHHHHhhcCcc---hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHH
Q 023501 48 PIYWTNRALCH-LKRNDWTKVEADCRKAIQLDHDS---VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVE 123 (281)
Q Consensus 48 ~~~~~~~a~~~-~~~~~~~~A~~~~~~al~l~p~~---~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~ 123 (281)
....+..|..+ ++.|+|++|+..|+..++..|++ +.++|.+|.+|+..|++++|+..|.++++..|++... .
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~----~ 217 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKA----A 217 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch----h
Confidence 46777788876 56799999999999999999988 5899999999999999999999999999998875443 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023501 124 DIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHVLD 166 (281)
Q Consensus 124 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 166 (281)
..... .+......++...+...++.+++..|...
T Consensus 218 dAl~k---------lg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 218 DAMFK---------VGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHH---------HHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 22221 22233356778888899999988776543
No 183
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.44 E-value=3.6e-05 Score=70.08 Aligned_cols=65 Identities=15% Similarity=0.031 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 50 YWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
+++.+|+.|-.+|++++|+.++++||...|..++.|+..|.++.+.|++.+|...++.|..+++.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~ 260 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA 260 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh
Confidence 56778999999999999999999999999999999999999999999999999999999999654
No 184
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.44 E-value=8.3e-07 Score=78.17 Aligned_cols=104 Identities=23% Similarity=0.302 Sum_probs=94.9
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc---CHHHHHHHHHHHHhhcCcchhHHH
Q 023501 10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRN---DWTKVEADCRKAIQLDHDSVKGHY 86 (281)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~l~p~~~~a~~ 86 (281)
-++.++.++..|+..|..+....|+..|.+++...|....+|.|+|.++++.+ +--.|+.++..|++++|...+||+
T Consensus 370 L~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~ 449 (758)
T KOG1310|consen 370 LPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHF 449 (758)
T ss_pred chHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHH
Confidence 46788999999999999999999999999999999999999999999998764 677899999999999999999999
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHhhcc
Q 023501 87 LLGQTLLQRNEYADGIKELEKALNLGR 113 (281)
Q Consensus 87 ~la~~~~~~g~~~~A~~~~~kal~~~p 113 (281)
+|+.++..++++.+|++....+....|
T Consensus 450 ~la~aL~el~r~~eal~~~~alq~~~P 476 (758)
T KOG1310|consen 450 RLARALNELTRYLEALSCHWALQMSFP 476 (758)
T ss_pred HHHHHHHHHhhHHHhhhhHHHHhhcCc
Confidence 999999999999999998776555545
No 185
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.42 E-value=5.5e-06 Score=78.00 Aligned_cols=113 Identities=19% Similarity=0.200 Sum_probs=92.2
Q ss_pred hhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch------------------------------------
Q 023501 5 AGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVP------------------------------------ 48 (281)
Q Consensus 5 ~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------------------------------------ 48 (281)
+++..++.-|-++-.+|..|...-|-..|..+|.+|.+++++++
T Consensus 483 ~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k 562 (1238)
T KOG1127|consen 483 RALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACK 562 (1238)
T ss_pred HHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHH
Confidence 45556667777777788887766677778888888888877753
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501 49 IYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP 117 (281)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~ 117 (281)
..|..+|..|.+.++..+|+.+++.|+..+|.+...|..+|++|...|++.-|++.|.|+..++|...-
T Consensus 563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred hhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence 234446777777778888999999999999999999999999999999999999999999999887433
No 186
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.40 E-value=3.4e-06 Score=70.41 Aligned_cols=95 Identities=11% Similarity=-0.026 Sum_probs=65.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcCh
Q 023501 19 LDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEY 98 (281)
Q Consensus 19 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~ 98 (281)
.+|..|++.|.+.+|.+.++.++...|. ++.+..++.+|....+...|+..+.+.+..-|.+...+.-.+.++..++++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence 4577777777777777777777766653 556666666777777777777777777777777766666667777777777
Q ss_pred HHHHHHHHHHHhhccC
Q 023501 99 ADGIKELEKALNLGRG 114 (281)
Q Consensus 99 ~~A~~~~~kal~~~p~ 114 (281)
++|+++|..++++.|.
T Consensus 307 ~~a~~lYk~vlk~~~~ 322 (478)
T KOG1129|consen 307 EDALQLYKLVLKLHPI 322 (478)
T ss_pred HHHHHHHHHHHhcCCc
Confidence 7777777777776655
No 187
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.39 E-value=8.9e-07 Score=52.50 Aligned_cols=42 Identities=24% Similarity=0.222 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHH
Q 023501 49 IYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQ 90 (281)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~ 90 (281)
.++..+|.+|..+|++++|++.++++++.+|+++.++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 456777777777777777777777777777777777777765
No 188
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=4e-08 Score=81.82 Aligned_cols=66 Identities=15% Similarity=0.154 Sum_probs=56.1
Q ss_pred CCcccccCCcccccCceecC-CCcccccchHHhHhccCCCCCCCCCCCcC-CCCCcccHHHHHHHHHH
Q 023501 205 PDYLCCKITLDIFRDPVITP-SGVTYERAVILDHLDKVGKFDPITREPLR-ESQLVPNLAIKEAVRAY 270 (281)
Q Consensus 205 p~~~~c~i~~~~~~~pv~~~-~g~~~~~~~i~~~~~~~~~~cP~~~~~~~-~~~~~~n~~l~~~i~~~ 270 (281)
-..+.||||..+++.-.+++ |+|.||..||-..++.++..||-||+.+- ...|.++.+.-.+|.+.
T Consensus 41 ~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i 108 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKI 108 (381)
T ss_pred hhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHH
Confidence 45789999999999999876 99999999999999988888999999875 55788877777776654
No 189
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.35 E-value=1e-06 Score=49.03 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc
Q 023501 49 IYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80 (281)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~ 80 (281)
.+|+++|.+|..+|++++|+.++++|++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45666666666666666666666666666665
No 190
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.35 E-value=5.4e-07 Score=50.09 Aligned_cols=31 Identities=23% Similarity=0.443 Sum_probs=15.5
Q ss_pred HHHHHhhcCcchhHHHHHHHHHHHhcChHHH
Q 023501 71 CRKAIQLDHDSVKGHYLLGQTLLQRNEYADG 101 (281)
Q Consensus 71 ~~~al~l~p~~~~a~~~la~~~~~~g~~~~A 101 (281)
|++||+++|+++.+|+.+|.+|...|++++|
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 3444555555555555555555555555444
No 191
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.34 E-value=5e-07 Score=50.23 Aligned_cols=33 Identities=30% Similarity=0.391 Sum_probs=31.3
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHH
Q 023501 36 AYTEAITLCPNVPIYWTNRALCHLKRNDWTKVE 68 (281)
Q Consensus 36 ~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~ 68 (281)
+|++||+++|+++.+|+++|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 488999999999999999999999999999986
No 192
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.34 E-value=7.9e-06 Score=70.25 Aligned_cols=102 Identities=18% Similarity=0.218 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHhCCC------chHHHHHHHHHHHHhcCH
Q 023501 11 AKQAEQLRLDGNYYFSKDRY--------------------GAAIDAYTEAITLCPN------VPIYWTNRALCHLKRNDW 64 (281)
Q Consensus 11 ~~~a~~~~~~g~~~~~~~~~--------------------~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~ 64 (281)
.-.+.+++++|++|-.+|+- +.|+++|..-+++... ...+|-|+|+.|+-+|+|
T Consensus 132 v~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf 211 (639)
T KOG1130|consen 132 VLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDF 211 (639)
T ss_pred HhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccH
Confidence 34578899999999877653 4577777777666433 357899999999999999
Q ss_pred HHHHHHHHHHHhhcCcc------hhHHHHHHHHHHHhcChHHHHHHHHHHHhhc
Q 023501 65 TKVEADCRKAIQLDHDS------VKGHYLLGQTLLQRNEYADGIKELEKALNLG 112 (281)
Q Consensus 65 ~~A~~~~~~al~l~p~~------~~a~~~la~~~~~~g~~~~A~~~~~kal~~~ 112 (281)
+.|+..-+.-+.+...+ -.++-++|.+++-+|+++.|+++|.+.+.+.
T Consensus 212 ~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 212 DQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 99999888877776543 4689999999999999999999999998874
No 193
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.34 E-value=2.9e-05 Score=67.62 Aligned_cols=102 Identities=19% Similarity=0.078 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHH
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQT 91 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~ 91 (281)
++++++..++++|-...+..+||++|.++..+-|+++.+++.+|..|-+.|+-.+|..+.-...+.-|.+.+..-++|.-
T Consensus 556 nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ay 635 (840)
T KOG2003|consen 556 NNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAY 635 (840)
T ss_pred hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHH
Confidence 34444444444444444455555555555555555555555555555444444444444444444444444444444444
Q ss_pred HHHhcChHHHHHHHHHHHhhcc
Q 023501 92 LLQRNEYADGIKELEKALNLGR 113 (281)
Q Consensus 92 ~~~~g~~~~A~~~~~kal~~~p 113 (281)
|+...-+++|+.+|+++--+.|
T Consensus 636 yidtqf~ekai~y~ekaaliqp 657 (840)
T KOG2003|consen 636 YIDTQFSEKAINYFEKAALIQP 657 (840)
T ss_pred HHhhHHHHHHHHHHHHHHhcCc
Confidence 4444445555555555554433
No 194
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.32 E-value=1.4e-05 Score=65.45 Aligned_cols=104 Identities=18% Similarity=0.146 Sum_probs=88.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc---hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHH
Q 023501 51 WTNRALCHLKRNDWTKVEADCRKAIQLDHDS---VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQ 127 (281)
Q Consensus 51 ~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~ 127 (281)
.++.|.-+++.|+|..|...|..-++.-|+. +.++|+||++++.+|+|+.|...|..+.+-.|+++..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KA--------- 214 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKA--------- 214 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCC---------
Confidence 7888999999999999999999999998875 7899999999999999999999999999998875554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 023501 128 ELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHVLDI 167 (281)
Q Consensus 128 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 167 (281)
.+..+..+....+.++.+++...+..++++.|....
T Consensus 215 ----pdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 215 ----PDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred ----hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 123445556667788899999999999998775443
No 195
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.31 E-value=0.00013 Score=58.58 Aligned_cols=117 Identities=15% Similarity=0.143 Sum_probs=80.9
Q ss_pred chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc---hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHH
Q 023501 47 VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS---VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVE 123 (281)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~ 123 (281)
++..++..|..++..|+|.+|+..+++++..-|.. ..+.+.+|.+++..|++++|+..+++.+...|.+.. ..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~----~~ 79 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK----AD 79 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT----HH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc----hh
Confidence 46778888999999999999999999999988764 689999999999999999999999999999888554 33
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 023501 124 DIWQELARAKYLLWEQ--ESSKRSWELQSLKEACEAALEEKHVLDI 167 (281)
Q Consensus 124 ~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 167 (281)
.+.-.++.+....... ...........+...++.++...|...-
T Consensus 80 ~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y 125 (203)
T PF13525_consen 80 YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEY 125 (203)
T ss_dssp HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTT
T ss_pred hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchH
Confidence 3433333332222111 1134456667788888888888776443
No 196
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.31 E-value=6.8e-06 Score=64.08 Aligned_cols=74 Identities=16% Similarity=0.189 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhH
Q 023501 11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKG 84 (281)
Q Consensus 11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a 84 (281)
..++-.|.+.|-++++.+.++.||.-+++||+++|++..++..||.+|-++.+|++|+.+|.+.++++|..-.+
T Consensus 131 e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 131 EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHH
Confidence 34566788999999999999999999999999999999999999999999999999999999999999975543
No 197
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.31 E-value=2.3e-05 Score=72.02 Aligned_cols=131 Identities=20% Similarity=0.162 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHH
Q 023501 15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQ 94 (281)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~ 94 (281)
..|...|..+.+.+.-++|-.++.+|-.++|..+..|+.+|.++...|++++|...|..|+.+||+++.....+|.++..
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 45566778888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcChHHHHH--HHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 95 RNEYADGIK--ELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEE 161 (281)
Q Consensus 95 ~g~~~~A~~--~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (281)
.|+..-|.. .+..+++++|.+ .+.+..++..-+ ..|+.+.+-..+..+++.
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~n-------~eaW~~LG~v~k---------~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPLN-------HEAWYYLGEVFK---------KLGDSKQAAECFQAALQL 783 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHH---------HccchHHHHHHHHHHHhh
Confidence 999988888 999999998873 355655555433 345555566666666554
No 198
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.30 E-value=1.8e-05 Score=67.09 Aligned_cols=138 Identities=19% Similarity=0.170 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc-----C-
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN------VPIYWTNRALCHLKRNDWTKVEADCRKAIQLD-----H- 79 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-----p- 79 (281)
+.+..+...|+.|-..|+|++|...|.++.+..-. -+..|...+.+|.+. ++++|+..+++|+.+- |
T Consensus 33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~ 111 (282)
T PF14938_consen 33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFS 111 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HH
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHH
Confidence 45677888899999999999999999999766321 246777778887666 9999999999999873 1
Q ss_pred cchhHHHHHHHHHHHh-cChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 80 DSVKGHYLLGQTLLQR-NEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAA 158 (281)
Q Consensus 80 ~~~~a~~~la~~~~~~-g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (281)
.-.+.+..+|.+|... |++++|++.|++|+++-...+. ...........+.-..+.+++.++...+++.
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~----------~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~ 181 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS----------PHSAAECLLKAADLYARLGRYEEAIEIYEEV 181 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-----------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC----------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 2367899999999999 9999999999999998543221 1111122233333444556777777777766
Q ss_pred HH
Q 023501 159 LE 160 (281)
Q Consensus 159 l~ 160 (281)
..
T Consensus 182 ~~ 183 (282)
T PF14938_consen 182 AK 183 (282)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 199
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.28 E-value=7.8e-05 Score=61.63 Aligned_cols=73 Identities=10% Similarity=0.022 Sum_probs=65.3
Q ss_pred CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhH---HHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCC
Q 023501 46 NVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKG---HYLLGQTLLQRNEYADGIKELEKALNLGRGAKPK 118 (281)
Q Consensus 46 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a---~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~ 118 (281)
.++..++..|.-++..|+|++|+..+++++...|..+.+ .+.+|.+++..+++++|+..+++.+++.|+++..
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~ 105 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI 105 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch
Confidence 356778888999999999999999999999999987654 4999999999999999999999999999986653
No 200
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.27 E-value=1.2e-05 Score=67.55 Aligned_cols=98 Identities=14% Similarity=0.113 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHH
Q 023501 51 WTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELA 130 (281)
Q Consensus 51 ~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~ 130 (281)
.-.+|+-|++.|.|++|++.|.+++.++|.|+..+.++|.+|+.+.+|..|...+..|+.++.. .+.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~---------Y~K---- 166 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL---------YVK---- 166 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH---------HHH----
Confidence 3457899999999999999999999999999999999999999999999999999999999322 121
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023501 131 RAKYLLWEQESSKRSWELQSLKEACEAALEEKHV 164 (281)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (281)
.+-..+......+...++++..+.+|+.++.
T Consensus 167 ---AYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 167 ---AYSRRMQARESLGNNMEAKKDCETVLALEPK 197 (536)
T ss_pred ---HHHHHHHHHHHHhhHHHHHHhHHHHHhhCcc
Confidence 2222233334456667777777777777654
No 201
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.27 E-value=4.1e-05 Score=69.46 Aligned_cols=114 Identities=16% Similarity=0.091 Sum_probs=83.7
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501 2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS 81 (281)
Q Consensus 2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 81 (281)
+|+++++.-|.-...|..+|+++-+.++.+.|...|...+...|+...+|..++..--+.|+.-.|...++++...+|.+
T Consensus 673 llEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~ 752 (913)
T KOG0495|consen 673 LLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKN 752 (913)
T ss_pred HHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCc
Confidence 45666666666677777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501 82 VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGA 115 (281)
Q Consensus 82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~ 115 (281)
...|...-.+-+..|..+.|.....+||+-+|++
T Consensus 753 ~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~s 786 (913)
T KOG0495|consen 753 ALLWLESIRMELRAGNKEQAELLMAKALQECPSS 786 (913)
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence 7777777777777777777777777777777763
No 202
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.25 E-value=6.4e-06 Score=69.81 Aligned_cols=84 Identities=17% Similarity=0.171 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcCh-HHHHHHHHH
Q 023501 29 RYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEY-ADGIKELEK 107 (281)
Q Consensus 29 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~-~~A~~~~~k 107 (281)
.+++|...|+...+..+.++.+++.+|.|++.+|+|++|...+.+|+..+|.++.++.+++.+...+|+. +.+...+.+
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 3555555555544444445555555555555555555555555555555555555555555555555555 333334444
Q ss_pred HHhhc
Q 023501 108 ALNLG 112 (281)
Q Consensus 108 al~~~ 112 (281)
.....
T Consensus 262 L~~~~ 266 (290)
T PF04733_consen 262 LKQSN 266 (290)
T ss_dssp CHHHT
T ss_pred HHHhC
Confidence 33343
No 203
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.25 E-value=7e-05 Score=56.79 Aligned_cols=98 Identities=18% Similarity=0.114 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc----------------------hHHHHHHHHHHHHhcCHHHHHHHH
Q 023501 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV----------------------PIYWTNRALCHLKRNDWTKVEADC 71 (281)
Q Consensus 14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~~a~~~~~~~~~~~A~~~~ 71 (281)
-+.+...|......++...++..+.+++.+..++ ..+...++..+...|++++|+..+
T Consensus 6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 85 (146)
T PF03704_consen 6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLL 85 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 3455566777888899999999999999885331 246666778888999999999999
Q ss_pred HHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501 72 RKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111 (281)
Q Consensus 72 ~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~ 111 (281)
++++.++|.+-.+|..+..+|..+|+..+|+..|.++...
T Consensus 86 ~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 86 QRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988655
No 204
>PRK15331 chaperone protein SicA; Provisional
Probab=98.24 E-value=4.8e-05 Score=57.91 Aligned_cols=101 Identities=9% Similarity=-0.030 Sum_probs=77.7
Q ss_pred CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHH
Q 023501 44 CPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVE 123 (281)
Q Consensus 44 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~ 123 (281)
.++.-...+..|.-++..|++++|...|+-...++|.+++.++.||-++-.+++|++|+..|..+..++++.+...
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~---- 108 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV---- 108 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc----
Confidence 3334456677788889999999999999999999999999999999999999999999999999999987644432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 124 DIWQELARAKYLLWEQESSKRSWELQSLKEACEAALE 160 (281)
Q Consensus 124 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (281)
...+......++...+...+..+++
T Consensus 109 ------------f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 109 ------------FFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred ------------chHHHHHHHhCCHHHHHHHHHHHHh
Confidence 2233333344455555555555555
No 205
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.22 E-value=4.5e-07 Score=75.22 Aligned_cols=65 Identities=12% Similarity=0.246 Sum_probs=53.2
Q ss_pred CCcccccCCcccccCcee-cCCCcccccchHHhHhccCCCCCCCCCCCcCCC----CCcccHHHHHHHHHH
Q 023501 205 PDYLCCKITLDIFRDPVI-TPSGVTYERAVILDHLDKVGKFDPITREPLRES----QLVPNLAIKEAVRAY 270 (281)
Q Consensus 205 p~~~~c~i~~~~~~~pv~-~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~----~~~~n~~l~~~i~~~ 270 (281)
-....|++|..+|.|+-+ +-|=||||++||..++.... +||.|+..+... .+.++..|..++-.+
T Consensus 13 n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~-~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL 82 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESK-YCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL 82 (331)
T ss_pred ccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhc-cCCccceeccCccccccCCcchHHHHHHHHH
Confidence 356789999999999996 45889999999999999866 599998776533 577788887777665
No 206
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.20 E-value=1e-05 Score=62.19 Aligned_cols=79 Identities=18% Similarity=0.064 Sum_probs=61.6
Q ss_pred hhhchHHHHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC-----------H
Q 023501 6 GLAGVAKQAEQLRLDGNYYFSKD----------RYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRND-----------W 64 (281)
Q Consensus 6 ~~~~~~~~a~~~~~~g~~~~~~~----------~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-----------~ 64 (281)
....+|..++.+..-|.+++... -+++|+..|++||.++|+...++.++|++|..++. |
T Consensus 17 ~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F 96 (186)
T PF06552_consen 17 AYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYF 96 (186)
T ss_dssp HHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHH
Confidence 34557888899988888886553 45789999999999999999999999999998874 8
Q ss_pred HHHHHHHHHHHhhcCcchhH
Q 023501 65 TKVEADCRKAIQLDHDSVKG 84 (281)
Q Consensus 65 ~~A~~~~~~al~l~p~~~~a 84 (281)
++|..+|++|+..+|.+.-.
T Consensus 97 ~kA~~~FqkAv~~~P~ne~Y 116 (186)
T PF06552_consen 97 EKATEYFQKAVDEDPNNELY 116 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHH
T ss_pred HHHHHHHHHHHhcCCCcHHH
Confidence 88999999999999987653
No 207
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=98.17 E-value=1.8e-06 Score=75.92 Aligned_cols=69 Identities=23% Similarity=0.451 Sum_probs=54.5
Q ss_pred CCCCCCcccccCCcccccCcee-cCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcc-cHHHHHHHHHH
Q 023501 201 PAEVPDYLCCKITLDIFRDPVI-TPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVP-NLAIKEAVRAY 270 (281)
Q Consensus 201 ~~~~p~~~~c~i~~~~~~~pv~-~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~-n~~l~~~i~~~ 270 (281)
+..+...+.||+|..++.+|+. +.|||.||..||..|+..++ .||.|+.++.....++ ...+++.+..+
T Consensus 15 ~~~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~-~cp~~~~~~~~~~~~~~~~~~~~~~~~l 85 (391)
T KOG0297|consen 15 GRPLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQ-KCPVCRQELTQAEELPVPRALRRELLKL 85 (391)
T ss_pred CCCCcccccCccccccccCCCCCCCCCCcccccccchhhccCc-CCcccccccchhhccCchHHHHHHHHhc
Confidence 3346678999999999999998 49999999999999999855 5999999988776665 33344444433
No 208
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.16 E-value=4.5e-05 Score=55.60 Aligned_cols=67 Identities=19% Similarity=0.121 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc---chhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 48 PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD---SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~---~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
+.+.+++|.++-.+|+.++|+..|++++..... -..++..+|.++..+|++++|+..+++++...|+
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD 70 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 356789999999999999999999999997644 3679999999999999999999999999988665
No 209
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.15 E-value=5.6e-05 Score=64.03 Aligned_cols=109 Identities=15% Similarity=0.088 Sum_probs=86.4
Q ss_pred hHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCC------chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc--
Q 023501 10 VAKQAEQLRLDGNYYFSK-DRYGAAIDAYTEAITLCPN------VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD-- 80 (281)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~-- 80 (281)
....+..+..+|..+... |++++|+.+|.+|+++... -..++.+.|.++..+|+|++|+..++++....-+
T Consensus 110 ~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~ 189 (282)
T PF14938_consen 110 FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENN 189 (282)
T ss_dssp HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccc
Confidence 455688899999999998 9999999999999988322 2467888999999999999999999999875321
Q ss_pred ----ch-hHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCC
Q 023501 81 ----SV-KGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPK 118 (281)
Q Consensus 81 ----~~-~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~ 118 (281)
+. ..++..+.+++..|++..|...+++....+|.....
T Consensus 190 l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s 232 (282)
T PF14938_consen 190 LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS 232 (282)
T ss_dssp TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 23 345677889999999999999999999998876554
No 210
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.15 E-value=5.9e-06 Score=48.90 Aligned_cols=42 Identities=19% Similarity=0.146 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 023501 15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRAL 56 (281)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~ 56 (281)
..+..+|..+...|++++|+..|+++++.+|+++.++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 568889999999999999999999999999999999998875
No 211
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.15 E-value=6.1e-06 Score=45.71 Aligned_cols=31 Identities=16% Similarity=0.269 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc
Q 023501 50 YWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80 (281)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~ 80 (281)
+++.+|.+++.+|++++|+..++++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 3444444444444444444444444444443
No 212
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.14 E-value=6e-05 Score=59.66 Aligned_cols=107 Identities=16% Similarity=0.101 Sum_probs=86.6
Q ss_pred hhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchh
Q 023501 4 EAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVK 83 (281)
Q Consensus 4 ~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 83 (281)
.++....|+.+.++..+|.-+...|+|+.|.+.|+..++++|..--+..|||.+++-.|+|+-|.+++.+--.-||++|-
T Consensus 89 tQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 89 SQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred hhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChH
Confidence 35666789999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred HHHHHHHHHHHhcChHHHH-HHHHHHHhh
Q 023501 84 GHYLLGQTLLQRNEYADGI-KELEKALNL 111 (281)
Q Consensus 84 a~~~la~~~~~~g~~~~A~-~~~~kal~~ 111 (281)
--..+-..-.. -++.+|. ...+++..+
T Consensus 169 R~LWLYl~E~k-~dP~~A~tnL~qR~~~~ 196 (297)
T COG4785 169 RSLWLYLNEQK-LDPKQAKTNLKQRAEKS 196 (297)
T ss_pred HHHHHHHHHhh-CCHHHHHHHHHHHHHhc
Confidence 44433322222 2455554 344455444
No 213
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=98.10 E-value=1.2e-06 Score=75.04 Aligned_cols=51 Identities=39% Similarity=0.760 Sum_probs=45.7
Q ss_pred ccccCCcccccCceecC-CCcccccchHHhHhccCCCCCCCCCCCcCCCCCcc
Q 023501 208 LCCKITLDIFRDPVITP-SGVTYERAVILDHLDKVGKFDPITREPLRESQLVP 259 (281)
Q Consensus 208 ~~c~i~~~~~~~pv~~~-~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~ 259 (281)
+.|.|++++-.+||++| +||.|+|.-|++++..++. ||+++++++.+++++
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e~G~-DPIt~~pLs~eelV~ 52 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAETGK-DPITNEPLSIEELVE 52 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHHcCC-CCCCCCcCCHHHeee
Confidence 57999999999999977 9999999999999999985 999999998766554
No 214
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.09 E-value=8.6e-06 Score=45.18 Aligned_cols=34 Identities=35% Similarity=0.513 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 023501 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV 47 (281)
Q Consensus 14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 47 (281)
|..+..+|..++..|+|++|+..|++|++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 5789999999999999999999999999999974
No 215
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.08 E-value=1.1e-05 Score=44.66 Aligned_cols=34 Identities=32% Similarity=0.501 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 023501 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV 47 (281)
Q Consensus 14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 47 (281)
|+.+..+|..++..|+|++|+.+|++++.++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 5788999999999999999999999999999975
No 216
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.07 E-value=3.3e-06 Score=55.81 Aligned_cols=39 Identities=26% Similarity=0.479 Sum_probs=31.8
Q ss_pred ccCCcccccC------------ce-ecCCCcccccchHHhHhccCCCCCCCCC
Q 023501 210 CKITLDIFRD------------PV-ITPSGVTYERAVILDHLDKVGKFDPITR 249 (281)
Q Consensus 210 c~i~~~~~~~------------pv-~~~~g~~~~~~~i~~~~~~~~~~cP~~~ 249 (281)
|.||.+.+.+ |+ ..+|||.|-..||.+|+..+. +||+||
T Consensus 22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~-~CP~CR 73 (73)
T PF12678_consen 22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN-TCPLCR 73 (73)
T ss_dssp ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS-B-TTSS
T ss_pred ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC-cCCCCC
Confidence 9999988844 33 468999999999999998777 699997
No 217
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=98.07 E-value=0.00016 Score=51.50 Aligned_cols=98 Identities=10% Similarity=0.086 Sum_probs=78.8
Q ss_pred HHHHH--HHHHHHHhcCCHHHHHHHHHHHHHhCCC------------chHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--
Q 023501 14 AEQLR--LDGNYYFSKDRYGAAIDAYTEAITLCPN------------VPIYWTNRALCHLKRNDWTKVEADCRKAIQL-- 77 (281)
Q Consensus 14 a~~~~--~~g~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-- 77 (281)
+..|. ..|...+..|-|++|...|.+|.+...+ |+.++..++.++..+|+|++++...++++..
T Consensus 7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN 86 (144)
T PF12968_consen 7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN 86 (144)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence 34444 4466778899999999999999987433 5678899999999999999999988888763
Q ss_pred -----cC----cchhHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501 78 -----DH----DSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111 (281)
Q Consensus 78 -----~p----~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~ 111 (281)
+. .|+.+.+..|.++-.+|+.++|+..|+++-++
T Consensus 87 RRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 87 RRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 33 36778899999999999999999999988766
No 218
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.00032 Score=63.09 Aligned_cols=141 Identities=14% Similarity=0.075 Sum_probs=103.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc-------------------
Q 023501 18 RLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD------------------- 78 (281)
Q Consensus 18 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~------------------- 78 (281)
++.+.+.|+.++.++|+..++ ..++.+..+...+|+.++++|+|++|++.|+..++.+
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 688899999999999999998 5667777788889999999999999999999886543
Q ss_pred -----------Cc-chhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 79 -----------HD-SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPK-GYIVEDIWQELARAKYLLWEQESSKRS 145 (281)
Q Consensus 79 -----------p~-~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~ 145 (281)
|. ..+.+|+.|-++...|+|.+|++.+++++.++...-.. ...-+.+..++.-++..+.. -....
T Consensus 160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlay--VlQ~~ 237 (652)
T KOG2376|consen 160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAY--VLQLQ 237 (652)
T ss_pred hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHH--HHHHh
Confidence 22 45678999999999999999999999998776542111 11235666666655544333 23345
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 023501 146 WELQSLKEACEAALEEKH 163 (281)
Q Consensus 146 ~~~~~~~~~~~~~l~~~~ 163 (281)
|+-.++.......+...+
T Consensus 238 Gqt~ea~~iy~~~i~~~~ 255 (652)
T KOG2376|consen 238 GQTAEASSIYVDIIKRNP 255 (652)
T ss_pred cchHHHHHHHHHHHHhcC
Confidence 666666665555555544
No 219
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=3.4e-06 Score=68.92 Aligned_cols=48 Identities=21% Similarity=0.197 Sum_probs=43.2
Q ss_pred CCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcC
Q 023501 205 PDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLR 253 (281)
Q Consensus 205 p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~ 253 (281)
+-.|.|-||...|.+||+|.|||.||..|-...++.+.. |++|++...
T Consensus 239 ~~Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~-c~vC~~~t~ 286 (313)
T KOG1813|consen 239 LLPFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEK-CYVCSQQTH 286 (313)
T ss_pred cCCccccccccccccchhhcCCceeehhhhccccccCCc-ceecccccc
Confidence 456889999999999999999999999999999998774 999988754
No 220
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.02 E-value=0.00012 Score=64.46 Aligned_cols=90 Identities=19% Similarity=0.158 Sum_probs=81.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHH
Q 023501 22 NYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADG 101 (281)
Q Consensus 22 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A 101 (281)
..+-..++++.|+..+++....+|. +...+|.++...++-.+|++.+.++++..|.+...+...|..+...++++.|
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 3344567899999999998888875 5556899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccC
Q 023501 102 IKELEKALNLGRG 114 (281)
Q Consensus 102 ~~~~~kal~~~p~ 114 (281)
+...++++.+.|+
T Consensus 254 L~iAk~av~lsP~ 266 (395)
T PF09295_consen 254 LEIAKKAVELSPS 266 (395)
T ss_pred HHHHHHHHHhCch
Confidence 9999999999887
No 221
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=6.2e-06 Score=65.50 Aligned_cols=52 Identities=25% Similarity=0.519 Sum_probs=46.2
Q ss_pred cccccCCcccccC----ceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcc
Q 023501 207 YLCCKITLDIFRD----PVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVP 259 (281)
Q Consensus 207 ~~~c~i~~~~~~~----pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~ 259 (281)
.+.||+|.+.+++ .|+.||||++|..|.+..+.... .||+|+.+++.+++++
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~-v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDM-VDPVTDKPLKDRDIIG 276 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccc-cccCCCCcCcccceEe
Confidence 4899999999998 44679999999999999999887 5999999999888775
No 222
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.90 E-value=0.00085 Score=50.01 Aligned_cols=72 Identities=10% Similarity=0.093 Sum_probs=64.6
Q ss_pred chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc---chhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCC
Q 023501 47 VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD---SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPK 118 (281)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~---~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~ 118 (281)
.+..++..|...++.|+|++|++.++.....-|. ...+.+.+|.+|+..|++++|+..+++-+++.|.++..
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 4567788888899999999999999999888774 46899999999999999999999999999999987765
No 223
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.89 E-value=0.00025 Score=60.21 Aligned_cols=103 Identities=16% Similarity=0.037 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc--CHHHHHHHHHHHHhhcCcchhHHHHHH
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRN--DWTKVEADCRKAIQLDHDSVKGHYLLG 89 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~l~p~~~~a~~~la 89 (281)
...+.....-..+++.++++.|.+.+...-+.+.+...+....|.+.+..| ++.+|...|++....-+.++..+..+|
T Consensus 129 ~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A 208 (290)
T PF04733_consen 129 GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLA 208 (290)
T ss_dssp TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHH
T ss_pred CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 345666677788999999999999999988877776555555555555555 699999999998887788999999999
Q ss_pred HHHHHhcChHHHHHHHHHHHhhccC
Q 023501 90 QTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 90 ~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
.+++.+|+|++|...+.+++..+|.
T Consensus 209 ~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 209 VCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred HHHHHhCCHHHHHHHHHHHHHhccC
Confidence 9999999999999999999988766
No 224
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.88 E-value=0.00043 Score=50.43 Aligned_cols=63 Identities=17% Similarity=0.176 Sum_probs=58.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 52 TNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 52 ~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
-..|.+....|+.+.|++-|.+++.+-|..+.+|.+.++++.-+|+.++|++.+++++++..+
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~ 109 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGD 109 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc
Confidence 345777889999999999999999999999999999999999999999999999999999544
No 225
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.0005 Score=56.15 Aligned_cols=109 Identities=14% Similarity=0.135 Sum_probs=94.2
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----C--CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchh
Q 023501 10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL----C--PNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVK 83 (281)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 83 (281)
++..+.....+|...++.||-+.|..+|+..-.. + ...-.+..|.+.+|...+++..|...+.+++..||.++.
T Consensus 208 ~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~ 287 (366)
T KOG2796|consen 208 PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAV 287 (366)
T ss_pred CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchh
Confidence 4667788889999999999999999999954332 2 234567777888888899999999999999999999999
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCC
Q 023501 84 GHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPK 118 (281)
Q Consensus 84 a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~ 118 (281)
+-...|.+++.+|+..+|++..+.++...|.+...
T Consensus 288 a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~ 322 (366)
T KOG2796|consen 288 ANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLH 322 (366)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHhccCCccchh
Confidence 99999999999999999999999999998875544
No 226
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.84 E-value=4.6e-06 Score=63.96 Aligned_cols=46 Identities=15% Similarity=0.215 Sum_probs=41.1
Q ss_pred cccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcC
Q 023501 207 YLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLR 253 (281)
Q Consensus 207 ~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~ 253 (281)
.|.|.||..-+..||+|.|||.||..|-..-+..+. .|-+|+....
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~-~C~~Cgk~t~ 241 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGD-ECGVCGKATY 241 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhccCC-cceecchhhc
Confidence 488999999999999999999999999988888777 5999987644
No 227
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.80 E-value=5e-05 Score=41.96 Aligned_cols=30 Identities=17% Similarity=0.144 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhcC
Q 023501 50 YWTNRALCHLKRNDWTKVEADCRKAIQLDH 79 (281)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p 79 (281)
+|..+|.+|..+|++++|+..++++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344445555555555555555555555444
No 228
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=1.5e-05 Score=65.40 Aligned_cols=47 Identities=17% Similarity=0.088 Sum_probs=42.1
Q ss_pred cccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCC
Q 023501 209 CCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRES 255 (281)
Q Consensus 209 ~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~ 255 (281)
.|+||..-+.-||.++|+|.||.-||.-.......+||+||.+++..
T Consensus 9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 49999999999999999999999999998776666799999998753
No 229
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=0.00093 Score=56.82 Aligned_cols=100 Identities=18% Similarity=0.238 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh--------------hcC-
Q 023501 15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQ--------------LDH- 79 (281)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--------------l~p- 79 (281)
..-..+|..+|..|+|++|+..|+-+...+.-++.++.++|.|++-+|.|.+|.....+|-+ ++.
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndE 137 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDE 137 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcH
Confidence 34445799999999999999999999887777889999999999999999999877666522 221
Q ss_pred -----------cchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 80 -----------DSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 80 -----------~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
+..+-...+|.+.+..-.|.+|++.|.+++.-+|+
T Consensus 138 k~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e 183 (557)
T KOG3785|consen 138 KRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE 183 (557)
T ss_pred HHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 12233344555666666789999999988887665
No 230
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=0.00068 Score=56.36 Aligned_cols=138 Identities=17% Similarity=0.195 Sum_probs=88.2
Q ss_pred chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHH----------Hhh-
Q 023501 9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKA----------IQL- 77 (281)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a----------l~l- 77 (281)
..|..-..+..+|..|+..++|..|..+|.+.-.+.|..+.....-|+.+++.+.+.+|+...... +++
T Consensus 39 r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLq 118 (459)
T KOG4340|consen 39 RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQ 118 (459)
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 344455566777777777777777777777777777777666666666666666666665543221 111
Q ss_pred -----c--------------C--cchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHH
Q 023501 78 -----D--------------H--DSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLL 136 (281)
Q Consensus 78 -----~--------------p--~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~ 136 (281)
. | +........|-++++.|++++|++-|+.+++...-++. ...
T Consensus 119 aAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl----------------lAY 182 (459)
T KOG4340|consen 119 AAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL----------------LAY 182 (459)
T ss_pred HHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCch----------------hHH
Confidence 1 2 34455666667777777777777777777766322111 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023501 137 WEQESSKRSWELQSLKEACEAALEEK 162 (281)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (281)
..+....+.+++..+.+.+.+.+++.
T Consensus 183 niALaHy~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 183 NLALAHYSSRQYASALKHISEIIERG 208 (459)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence 44455667788888888888887754
No 231
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=0.003 Score=53.85 Aligned_cols=87 Identities=16% Similarity=0.102 Sum_probs=76.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHH
Q 023501 22 NYYFSKDRYGAAIDAYTEAITLCPNV-PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYAD 100 (281)
Q Consensus 22 ~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~ 100 (281)
..++..+||..|+..++-....+... ...-..+|.|++.+|+|++|+..|..+...+..+.+.+.++|-+++-+|.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 45678899999999999888766543 46778899999999999999999999999887889999999999999999999
Q ss_pred HHHHHHHH
Q 023501 101 GIKELEKA 108 (281)
Q Consensus 101 A~~~~~ka 108 (281)
|.+...++
T Consensus 110 A~~~~~ka 117 (557)
T KOG3785|consen 110 AKSIAEKA 117 (557)
T ss_pred HHHHHhhC
Confidence 98877665
No 232
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.69 E-value=2.7e-05 Score=68.34 Aligned_cols=92 Identities=13% Similarity=0.096 Sum_probs=84.7
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV 82 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 82 (281)
.-+++..+|+.|..+.+++.++++.++|..|+.-+.+||+.+|....+|+.+|.+.+.++.+.+|+.++++...+.|+.+
T Consensus 27 ysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~ 106 (476)
T KOG0376|consen 27 YSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDP 106 (476)
T ss_pred HHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcH
Confidence 34678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHH
Q 023501 83 KGHYLLGQTLLQ 94 (281)
Q Consensus 83 ~a~~~la~~~~~ 94 (281)
.+...+.++-.-
T Consensus 107 ~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 107 DATRKIDECNKI 118 (476)
T ss_pred HHHHHHHHHHHH
Confidence 988777766543
No 233
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.00016 Score=61.25 Aligned_cols=103 Identities=23% Similarity=0.293 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---C----------------chHHHHHHHHHHHHhcCHHHHHHHHH
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCP---N----------------VPIYWTNRALCHLKRNDWTKVEADCR 72 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p---~----------------~~~~~~~~a~~~~~~~~~~~A~~~~~ 72 (281)
+.++..++.|+..+++++|..|..-|.+++..-. . -...+.+.+.+-++.+.+..|+....
T Consensus 220 ~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~ 299 (372)
T KOG0546|consen 220 EREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTN 299 (372)
T ss_pred hhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccc
Confidence 4456677889999999999999999999876521 1 13577788999999999999999999
Q ss_pred HHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 73 KAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 73 ~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
.++..++...++|+++++.+..+.++++|++.+..+....|+
T Consensus 300 ~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~ 341 (372)
T KOG0546|consen 300 EALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPN 341 (372)
T ss_pred cccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcc
Confidence 999999999999999999999999999999999999988776
No 234
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.64 E-value=2e-05 Score=69.36 Aligned_cols=59 Identities=17% Similarity=0.170 Sum_probs=47.1
Q ss_pred CCCCCCcccccCCcccccCceecCCCcccccchHHhHhcc----CCCCCCCCCCCcCCCCCcc
Q 023501 201 PAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDK----VGKFDPITREPLRESQLVP 259 (281)
Q Consensus 201 ~~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~----~~~~cP~~~~~~~~~~~~~ 259 (281)
+.+.-....|.+|.+.-.||+.+.|-|+|||.||.+++.. ++.+||.|-.+++.+.-.|
T Consensus 530 ~~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~ 592 (791)
T KOG1002|consen 530 PDENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEP 592 (791)
T ss_pred CccccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccch
Confidence 3444467889999999999999999999999999887643 3457999998887654333
No 235
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.0071 Score=52.06 Aligned_cols=44 Identities=11% Similarity=0.139 Sum_probs=37.9
Q ss_pred CcccccCCcccccC---ceecCCCcccccchHHhHhccCC--CCCCCCC
Q 023501 206 DYLCCKITLDIFRD---PVITPSGVTYERAVILDHLDKVG--KFDPITR 249 (281)
Q Consensus 206 ~~~~c~i~~~~~~~---pv~~~~g~~~~~~~i~~~~~~~~--~~cP~~~ 249 (281)
+-|.|||..+.-++ |+.++|||+-++..|.+-..++. ..||-|-
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP 381 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCP 381 (394)
T ss_pred ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCC
Confidence 45899999988776 99999999999999999988765 4699994
No 236
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.62 E-value=0.00095 Score=47.28 Aligned_cols=92 Identities=15% Similarity=0.198 Sum_probs=78.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCch---HHHHHHHHHHHHhcC-----------HHHHHHHHHHHHhhcCcchhHH
Q 023501 20 DGNYYFSKDRYGAAIDAYTEAITLCPNVP---IYWTNRALCHLKRND-----------WTKVEADCRKAIQLDHDSVKGH 85 (281)
Q Consensus 20 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~~-----------~~~A~~~~~~al~l~p~~~~a~ 85 (281)
++..++.+|++-+|++..+..+...+++. .++...|.++.++.. .-.+++.+.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 57789999999999999999999988866 566667888776653 4568999999999999999999
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501 86 YLLGQTLLQRNEYADGIKELEKALNL 111 (281)
Q Consensus 86 ~~la~~~~~~g~~~~A~~~~~kal~~ 111 (281)
+.+|.-+.....|++++.-.+++|..
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 99998888888889998888888866
No 237
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.62 E-value=0.0054 Score=48.45 Aligned_cols=98 Identities=26% Similarity=0.266 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHH-
Q 023501 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAIT--LCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQ- 90 (281)
Q Consensus 14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~- 90 (281)
.......+..+...+++..++..+..++. ..+.....+...+..+...+++..++..+..++..++.........+.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 34444555555555555555555555554 445555555555555555555555555555555555544444444444
Q ss_pred HHHHhcChHHHHHHHHHHHhh
Q 023501 91 TLLQRNEYADGIKELEKALNL 111 (281)
Q Consensus 91 ~~~~~g~~~~A~~~~~kal~~ 111 (281)
++...|+++.|...+.+++..
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~ 159 (291)
T COG0457 139 ALYELGDYEEALELYEKALEL 159 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhc
Confidence 555555555555555555443
No 238
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.0043 Score=51.65 Aligned_cols=103 Identities=18% Similarity=0.192 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHH---------------------
Q 023501 15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRK--------------------- 73 (281)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~--------------------- 73 (281)
+.....|......|++.+|...|..++...|.+..+...++.||...|+.+.|...+..
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~ 214 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE 214 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence 44556778899999999999999999999999999999999999999998665544332
Q ss_pred -------------HHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501 74 -------------AIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP 117 (281)
Q Consensus 74 -------------al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~ 117 (281)
.+..+|++..+-+.+|..+...|++++|.+.+-..+..+.+..+
T Consensus 215 qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d 271 (304)
T COG3118 215 QAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFED 271 (304)
T ss_pred HHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccC
Confidence 22246899999999999999999999999999999888655443
No 239
>PF04641 Rtf2: Rtf2 RING-finger
Probab=97.60 E-value=4.7e-05 Score=63.51 Aligned_cols=54 Identities=19% Similarity=0.426 Sum_probs=43.2
Q ss_pred CCCcccccCCcccccC--ce--ecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcc
Q 023501 204 VPDYLCCKITLDIFRD--PV--ITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVP 259 (281)
Q Consensus 204 ~p~~~~c~i~~~~~~~--pv--~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~ 259 (281)
-...|.|||++..|.. +. +.||||+|+..+|.+.- ... .||+|+.+|...++++
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~-~Cp~c~~~f~~~DiI~ 167 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSK-KCPVCGKPFTEEDIIP 167 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccc-cccccCCccccCCEEE
Confidence 3567999999999954 23 47999999999999983 233 5999999999877664
No 240
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.60 E-value=0.00063 Score=61.74 Aligned_cols=109 Identities=21% Similarity=0.276 Sum_probs=86.6
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----chHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 023501 2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN----VPIYWTNRALCHLKRNDWTKVEADCRKAIQL 77 (281)
Q Consensus 2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 77 (281)
+|+.....-|+.+--+...|..+...|+.++|+..|++++..... ...++..+|.|+..+.+|++|...+.+.++.
T Consensus 255 lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 255 LLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 355556666788888899999999999999999999998854333 4578888999999999999999999999886
Q ss_pred cCcchhH--HHHHHHHHHHhcCh-------HHHHHHHHHHHhh
Q 023501 78 DHDSVKG--HYLLGQTLLQRNEY-------ADGIKELEKALNL 111 (281)
Q Consensus 78 ~p~~~~a--~~~la~~~~~~g~~-------~~A~~~~~kal~~ 111 (281)
+ .|.++ .|..|-++..+|+. ++|.+.+.++-.+
T Consensus 335 s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 335 S-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred c-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 5 45444 46668888999988 7777777766655
No 241
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.60 E-value=0.0061 Score=52.56 Aligned_cols=106 Identities=13% Similarity=0.142 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC-cchhHHHHHHH
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDH-DSVKGHYLLGQ 90 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p-~~~~a~~~la~ 90 (281)
..+......|..-+..|+|..|.+...++-+-.+.-...|..-|.+--++|+++.|-.++.++-++.+ +.......++.
T Consensus 82 rra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrar 161 (400)
T COG3071 82 RRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRAR 161 (400)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 45667778899999999999999999998888887778888888899999999999999999999943 34667888999
Q ss_pred HHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501 91 TLLQRNEYADGIKELEKALNLGRGAKP 117 (281)
Q Consensus 91 ~~~~~g~~~~A~~~~~kal~~~p~~~~ 117 (281)
++...|++..|.....++++..|.++.
T Consensus 162 lll~~~d~~aA~~~v~~ll~~~pr~~~ 188 (400)
T COG3071 162 LLLNRRDYPAARENVDQLLEMTPRHPE 188 (400)
T ss_pred HHHhCCCchhHHHHHHHHHHhCcCChH
Confidence 999999999999999999999877433
No 242
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=7.1e-05 Score=63.72 Aligned_cols=47 Identities=21% Similarity=0.382 Sum_probs=40.6
Q ss_pred ccccCCcccccC---ceecCCCcccccchHHhHhccCCCCCCCCCCCcCC
Q 023501 208 LCCKITLDIFRD---PVITPSGVTYERAVILDHLDKVGKFDPITREPLRE 254 (281)
Q Consensus 208 ~~c~i~~~~~~~---pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~ 254 (281)
..|-||.+-+.. =+++||+|.|=..||..||....++||+|+..+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 689999998886 34699999999999999999887679999976543
No 243
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=3.6e-05 Score=63.15 Aligned_cols=47 Identities=15% Similarity=0.242 Sum_probs=38.6
Q ss_pred ccccCCcccccC---ceecCCCcccccchHHhHhccCCCCCCCCCCCcCC
Q 023501 208 LCCKITLDIFRD---PVITPSGVTYERAVILDHLDKVGKFDPITREPLRE 254 (281)
Q Consensus 208 ~~c~i~~~~~~~---pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~ 254 (281)
..|.||..-|.. =+++||.|.|-..||..|+-.....||+||.++++
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 679999876653 34699999999999999998555569999998875
No 244
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=2.5e-05 Score=72.05 Aligned_cols=46 Identities=20% Similarity=0.340 Sum_probs=41.1
Q ss_pred CcccccCCcccccC-----ceecCCCcccccchHHhHhccCCCCCCCCCCCc
Q 023501 206 DYLCCKITLDIFRD-----PVITPSGVTYERAVILDHLDKVGKFDPITREPL 252 (281)
Q Consensus 206 ~~~~c~i~~~~~~~-----pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~ 252 (281)
.+-.|+||.+.|.. |-.++|||.|+..||..|++... +||.||..+
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~q-tCP~CR~~~ 340 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQ-TCPTCRTVL 340 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhC-cCCcchhhh
Confidence 46789999999999 77899999999999999999877 599999844
No 245
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.53 E-value=0.00019 Score=39.56 Aligned_cols=33 Identities=27% Similarity=0.420 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 023501 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN 46 (281)
Q Consensus 14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 46 (281)
++.+..+|..+...|++++|+.+|.++++++|+
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 467899999999999999999999999999885
No 246
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.53 E-value=0.0012 Score=56.80 Aligned_cols=119 Identities=14% Similarity=0.056 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHH
Q 023501 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLL 93 (281)
Q Consensus 14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~ 93 (281)
+......+..+...|++++|.+....++...-+.- ++...+ ....+++..=++.+++.++..|+++..++.+|..++
T Consensus 263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~ 339 (400)
T COG3071 263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLAL 339 (400)
T ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHH
Confidence 55566677888888999999988888887654422 222222 235677777777777777777777777777777777
Q ss_pred HhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHH
Q 023501 94 QRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLL 136 (281)
Q Consensus 94 ~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~ 136 (281)
..+.|.+|..+|+.+++..|+..+ ......+...+++.....
T Consensus 340 k~~~w~kA~~~leaAl~~~~s~~~-~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 340 KNKLWGKASEALEAALKLRPSASD-YAELADALDQLGEPEEAE 381 (400)
T ss_pred HhhHHHHHHHHHHHHHhcCCChhh-HHHHHHHHHHcCChHHHH
Confidence 777777777777777777655222 223344444444444333
No 247
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.51 E-value=0.0095 Score=47.00 Aligned_cols=105 Identities=25% Similarity=0.290 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHH-HHHHhcCHHHHHHHHHHHHhhcC---cchhHH
Q 023501 10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRAL-CHLKRNDWTKVEADCRKAIQLDH---DSVKGH 85 (281)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~-~~~~~~~~~~A~~~~~~al~l~p---~~~~a~ 85 (281)
.+.....+...|......+++..|+..+.+++...+.+.......+. ++...|+++.|...+.+++..+| .....+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 170 (291)
T COG0457 91 LPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEAL 170 (291)
T ss_pred ccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHH
Confidence 34455667777777888888888888888888877766555555555 77788888888888888877766 456666
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 86 YLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 86 ~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
...+..+...++++.|+..+.+++...+.
T Consensus 171 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 171 LALGALLEALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred HHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 77777777778888888888888877544
No 248
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.51 E-value=0.00055 Score=41.97 Aligned_cols=41 Identities=17% Similarity=0.276 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHH
Q 023501 50 YWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQ 90 (281)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~ 90 (281)
+++.+|..++++|+|++|..+++.+++++|+|..+......
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 56677888888888888888888888888888777654443
No 249
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.50 E-value=0.00075 Score=56.29 Aligned_cols=61 Identities=20% Similarity=0.123 Sum_probs=39.7
Q ss_pred HHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCC
Q 023501 58 HLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPK 118 (281)
Q Consensus 58 ~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~ 118 (281)
..+.|+.++|...++.|+.++|.++.++..+|+....-++.-+|-++|-+|+.++|.+...
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 4456666666666666666666666666666666666666666666666666666654443
No 250
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.46 E-value=0.0063 Score=52.09 Aligned_cols=100 Identities=16% Similarity=0.120 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--c----hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc--------
Q 023501 15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN--V----PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD-------- 80 (281)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~-------- 80 (281)
.++..+|+++...+-|+.+++.|+.|+.+.-. | -.++..+|..+-.+.|+++|+-+..+|..+...
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 45556788888888888888888888777433 2 357788888888888888888888888776521
Q ss_pred --chhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 81 --SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 81 --~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
..-++|.++.++..+|+...|.++++++.++.-.
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~ 238 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQ 238 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 1345677888888888888888888888777543
No 251
>PRK10941 hypothetical protein; Provisional
Probab=97.42 E-value=0.0024 Score=53.37 Aligned_cols=80 Identities=9% Similarity=-0.035 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHH
Q 023501 49 IYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQE 128 (281)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~ 128 (281)
....|+=.+|...++++.|+...+..+.++|+++.-+.-+|.+|.++|.+..|...++..++.+|+.+. ...+...
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~----a~~ik~q 257 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI----SEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh----HHHHHHH
Confidence 345566677888888888888888888888888888888888888888888888888888888877444 3344444
Q ss_pred HHHH
Q 023501 129 LARA 132 (281)
Q Consensus 129 l~~~ 132 (281)
+...
T Consensus 258 l~~l 261 (269)
T PRK10941 258 IHSI 261 (269)
T ss_pred HHHH
Confidence 4444
No 252
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.009 Score=50.50 Aligned_cols=87 Identities=10% Similarity=0.017 Sum_probs=68.0
Q ss_pred chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc----chhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchH
Q 023501 47 VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD----SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIV 122 (281)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~----~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~ 122 (281)
.+..|-.-|+-|++-++|..|+..|.++|+..-. +...|.++|-+...+|+|..|+..+.+++.++|......+..
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 4566777799999999999999999999987633 567889999999999999999999999999988854443333
Q ss_pred HHHHHHHHHHH
Q 023501 123 EDIWQELARAK 133 (281)
Q Consensus 123 ~~~~~~l~~~~ 133 (281)
....-.|.++.
T Consensus 160 Akc~~eLe~~~ 170 (390)
T KOG0551|consen 160 AKCLLELERFA 170 (390)
T ss_pred hHHHHHHHHHH
Confidence 33333444433
No 253
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.0033 Score=56.79 Aligned_cols=93 Identities=13% Similarity=0.091 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHH
Q 023501 13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTL 92 (281)
Q Consensus 13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~ 92 (281)
....+..--+.+...++|++|+....+.+...|++..+....-.|+.+++.|++|+.+.++=..+.-.+ ...|..|.|.
T Consensus 11 ~~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~ 89 (652)
T KOG2376|consen 11 NLEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCE 89 (652)
T ss_pred cHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHH
Confidence 345666777888889999999999999999999988888888888888888888875444332222111 1226778888
Q ss_pred HHhcChHHHHHHHH
Q 023501 93 LQRNEYADGIKELE 106 (281)
Q Consensus 93 ~~~g~~~~A~~~~~ 106 (281)
+++++.++|+..+.
T Consensus 90 Yrlnk~Dealk~~~ 103 (652)
T KOG2376|consen 90 YRLNKLDEALKTLK 103 (652)
T ss_pred HHcccHHHHHHHHh
Confidence 88888888888877
No 254
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.40 E-value=0.0078 Score=59.89 Aligned_cols=94 Identities=11% Similarity=0.009 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--cCcchhHHHHHHHHHH
Q 023501 17 LRLDGNYYFSKDRYGAAIDAYTEAITLC-PNVPIYWTNRALCHLKRNDWTKVEADCRKAIQL--DHDSVKGHYLLGQTLL 93 (281)
Q Consensus 17 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--~p~~~~a~~~la~~~~ 93 (281)
+..+-..|.+.|++++|...|....+.+ +.+...|..+..+|.+.|++++|+..+++..+. .|+ ...|..+..++.
T Consensus 582 ynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~ 660 (1060)
T PLN03218 582 VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAG 660 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Confidence 3333344444444444444444444433 223444444444444455555555444444433 122 334444444455
Q ss_pred HhcChHHHHHHHHHHHhh
Q 023501 94 QRNEYADGIKELEKALNL 111 (281)
Q Consensus 94 ~~g~~~~A~~~~~kal~~ 111 (281)
..|++++|.+.+.+..+.
T Consensus 661 k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 661 HAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred hCCCHHHHHHHHHHHHHc
Confidence 555555555555544443
No 255
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.00065 Score=54.62 Aligned_cols=61 Identities=10% Similarity=0.021 Sum_probs=57.3
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 54 RALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 54 ~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
-|..++....|..|+..|.+||.++|..+..+.+.+.+++++.+|+.+.....++++++|+
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N 76 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN 76 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH
Confidence 4667778889999999999999999999999999999999999999999999999999887
No 256
>PRK10941 hypothetical protein; Provisional
Probab=97.39 E-value=0.0025 Score=53.22 Aligned_cols=79 Identities=11% Similarity=0.028 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHH
Q 023501 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTL 92 (281)
Q Consensus 14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~ 92 (281)
.+.+.++=..+.+.++++.|+.+.+..+.+.|+++.-+.-||.+|.++|.+..|..|++..++..|+.+.+-....++.
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 3456677788999999999999999999999999999999999999999999999999999999999998876665543
No 257
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.38 E-value=0.0035 Score=49.03 Aligned_cols=98 Identities=12% Similarity=0.018 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc-hhHHHHHHH
Q 023501 15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV---PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS-VKGHYLLGQ 90 (281)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-~~a~~~la~ 90 (281)
-....++..+...|++++|+..+..++....+. +.+-..+|.+..++|.+++|+..++.... +.+ +..-...|.
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGD 167 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGD 167 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhh
Confidence 345678899999999999999999998765442 46777889999999999999888765432 222 234567899
Q ss_pred HHHHhcChHHHHHHHHHHHhhccC
Q 023501 91 TLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 91 ~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
++...|+-++|...|.+++...++
T Consensus 168 ill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 168 ILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHcCchHHHHHHHHHHHHccCC
Confidence 999999999999999999998643
No 258
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.37 E-value=0.0091 Score=59.43 Aligned_cols=94 Identities=12% Similarity=0.052 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc-CcchhHHHHHHHH
Q 023501 15 EQLRLDGNYYFSKDRYGAAIDAYTEAITL--CPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD-HDSVKGHYLLGQT 91 (281)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-p~~~~a~~~la~~ 91 (281)
..|..+...|.+.|++++|+..|.+.... .| +...|..+..+|.+.|++++|...+.+..+.. +.+...|..+..+
T Consensus 615 ~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~a 693 (1060)
T PLN03218 615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGA 693 (1060)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 44455555555555555555555554443 22 23444445555555555555555555554433 2234445555555
Q ss_pred HHHhcChHHHHHHHHHHH
Q 023501 92 LLQRNEYADGIKELEKAL 109 (281)
Q Consensus 92 ~~~~g~~~~A~~~~~kal 109 (281)
|...|++++|...|++..
T Consensus 694 y~k~G~~eeA~~lf~eM~ 711 (1060)
T PLN03218 694 CSNAKNWKKALELYEDIK 711 (1060)
T ss_pred HHhCCCHHHHHHHHHHHH
Confidence 555555555555555443
No 259
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=5.7e-05 Score=62.72 Aligned_cols=53 Identities=25% Similarity=0.446 Sum_probs=43.5
Q ss_pred CCcccccCCcccccCcee-cCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCc
Q 023501 205 PDYLCCKITLDIFRDPVI-TPSGVTYERAVILDHLDKVGKFDPITREPLRESQLV 258 (281)
Q Consensus 205 p~~~~c~i~~~~~~~pv~-~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~ 258 (281)
|+.-.||+|..--.+|.+ +-+|.+||-.||-.++...++ ||+|+.|.+.++++
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~-CPVT~~p~~v~~l~ 351 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGH-CPVTGYPASVDHLI 351 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCC-CCccCCcchHHHHH
Confidence 345679999988888775 568999999999999997775 99999988765443
No 260
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.36 E-value=0.0014 Score=62.67 Aligned_cols=94 Identities=10% Similarity=0.006 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHh
Q 023501 16 QLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQR 95 (281)
Q Consensus 16 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~ 95 (281)
.+..+...+.+.|++++|.+.+.+. ...| +...|..+..++...|+++.|...+++.++++|.+...|..++.+|...
T Consensus 464 ~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~ 541 (697)
T PLN03081 464 HYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSS 541 (697)
T ss_pred chHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhC
Confidence 3444556666666666666666542 2223 3445666666666677777777777777777777666777777777777
Q ss_pred cChHHHHHHHHHHHhh
Q 023501 96 NEYADGIKELEKALNL 111 (281)
Q Consensus 96 g~~~~A~~~~~kal~~ 111 (281)
|++++|.+.++...+.
T Consensus 542 G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 542 GRQAEAAKVVETLKRK 557 (697)
T ss_pred CCHHHHHHHHHHHHHc
Confidence 7777777777665544
No 261
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.36 E-value=0.0025 Score=61.10 Aligned_cols=97 Identities=8% Similarity=-0.074 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc-CcchhHHHHHH
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLC-PNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD-HDSVKGHYLLG 89 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-p~~~~a~~~la 89 (281)
.+...|..+...|.+.|++++|+..|.+..... .-+...|..+..++.+.|++++|...+...++.. +.+...+..+.
T Consensus 288 ~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li 367 (697)
T PLN03081 288 KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALV 367 (697)
T ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHH
Confidence 355667777777788888888888887765432 1134556666666666666666666666666554 33444555555
Q ss_pred HHHHHhcChHHHHHHHHHH
Q 023501 90 QTLLQRNEYADGIKELEKA 108 (281)
Q Consensus 90 ~~~~~~g~~~~A~~~~~ka 108 (281)
..|.+.|++++|...|++.
T Consensus 368 ~~y~k~G~~~~A~~vf~~m 386 (697)
T PLN03081 368 DLYSKWGRMEDARNVFDRM 386 (697)
T ss_pred HHHHHCCCHHHHHHHHHhC
Confidence 5555555555555555543
No 262
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.0077 Score=49.40 Aligned_cols=103 Identities=15% Similarity=0.156 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhcCHHHHHHHHHHHH----hhcC--cchhHHHH
Q 023501 15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLC-PNVPIYWTNRALCHLKRNDWTKVEADCRKAI----QLDH--DSVKGHYL 87 (281)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al----~l~p--~~~~a~~~ 87 (281)
.+.+.+.+.+...|+|.-.+..|.+.+..+ |.++.+...++.+.++.||.+.|..+++++- +++. .+.-.+.+
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 345567888899999999999999999998 6789999999999999999999999999543 3442 34567777
Q ss_pred HHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501 88 LGQTLLQRNEYADGIKELEKALNLGRGAKP 117 (281)
Q Consensus 88 la~~~~~~g~~~~A~~~~~kal~~~p~~~~ 117 (281)
.+.++.-.+++.+|...+.+++..+|....
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~ 287 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAV 287 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchh
Confidence 888888888999999999999999876433
No 263
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.00015 Score=58.78 Aligned_cols=48 Identities=15% Similarity=0.038 Sum_probs=39.5
Q ss_pred CcccccCCcccccCcee-cCCCcccccchHHhHhcc-CCCCCCCCCCCcC
Q 023501 206 DYLCCKITLDIFRDPVI-TPSGVTYERAVILDHLDK-VGKFDPITREPLR 253 (281)
Q Consensus 206 ~~~~c~i~~~~~~~pv~-~~~g~~~~~~~i~~~~~~-~~~~cP~~~~~~~ 253 (281)
....||+|++.-..|-+ .+|||.||-.||..-... ...+||.|+++..
T Consensus 238 ~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 238 SDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 56889999999999986 569999999999887543 3346999998765
No 264
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.31 E-value=0.029 Score=46.17 Aligned_cols=85 Identities=19% Similarity=0.230 Sum_probs=71.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHH
Q 023501 27 KDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELE 106 (281)
Q Consensus 27 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~ 106 (281)
.+.+.+|.-+|+..-+..|-.+.+..+.|.|++.+|+|++|...++.|+..++++++++.++-.+-..+|...++..-+.
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 44688888899888877777888999999999999999999999999999999999999999999999998877765555
Q ss_pred HHHhh
Q 023501 107 KALNL 111 (281)
Q Consensus 107 kal~~ 111 (281)
.-+..
T Consensus 266 ~QLk~ 270 (299)
T KOG3081|consen 266 SQLKL 270 (299)
T ss_pred HHHHh
Confidence 44433
No 265
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.31 E-value=0.023 Score=50.47 Aligned_cols=110 Identities=9% Similarity=-0.005 Sum_probs=100.5
Q ss_pred hhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhH
Q 023501 5 AGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKG 84 (281)
Q Consensus 5 ~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a 84 (281)
..+..+.-+...|...|.--..++++..|...|.+|++.+-.+..+|...+.+-++.+....|...+++|+.+-|.-.+.
T Consensus 64 d~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql 143 (677)
T KOG1915|consen 64 DQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL 143 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH
Confidence 34445556667788888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 85 HYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
||....+-..+|+...|.+.|++=+...|+
T Consensus 144 WyKY~ymEE~LgNi~gaRqiferW~~w~P~ 173 (677)
T KOG1915|consen 144 WYKYIYMEEMLGNIAGARQIFERWMEWEPD 173 (677)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHcCCCc
Confidence 999999999999999999999999999877
No 266
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.30 E-value=0.041 Score=42.98 Aligned_cols=95 Identities=14% Similarity=0.063 Sum_probs=79.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh-hcCcchhHHHHHHHHHHHhcCh
Q 023501 20 DGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQ-LDHDSVKGHYLLGQTLLQRNEY 98 (281)
Q Consensus 20 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-l~p~~~~a~~~la~~~~~~g~~ 98 (281)
.+....+.=|.+.++.-.++.++..|+.. ..+.+|.+...+|++.+|...|.+++. +--.++..+..++++.+..+++
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~~~ApTvq-nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~ 140 (251)
T COG4700 62 LLMALQQKLDPERHLREATEELAIAPTVQ-NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEF 140 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHHhhchhHH-HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccH
Confidence 34555566688888888888888888744 456689999999999999999999975 5567788899999999999999
Q ss_pred HHHHHHHHHHHhhccCC
Q 023501 99 ADGIKELEKALNLGRGA 115 (281)
Q Consensus 99 ~~A~~~~~kal~~~p~~ 115 (281)
..|...+++..+..|..
T Consensus 141 A~a~~tLe~l~e~~pa~ 157 (251)
T COG4700 141 AAAQQTLEDLMEYNPAF 157 (251)
T ss_pred HHHHHHHHHHhhcCCcc
Confidence 99999999999998763
No 267
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.30 E-value=0.00038 Score=39.06 Aligned_cols=27 Identities=33% Similarity=0.455 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501 85 HYLLGQTLLQRNEYADGIKELEKALNL 111 (281)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~kal~~ 111 (281)
+..+|.+|..+|+|++|+..|++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455666666666666666666665544
No 268
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.29 E-value=0.00022 Score=60.09 Aligned_cols=74 Identities=18% Similarity=0.186 Sum_probs=70.6
Q ss_pred hhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 023501 5 AGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD 78 (281)
Q Consensus 5 ~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~ 78 (281)
.++..+|..+..+..+|.++++.++...||.-|..|+.++|+.+.-|-.++.++..+|+|++|.+++..|++++
T Consensus 139 ~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld 212 (377)
T KOG1308|consen 139 SAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLD 212 (377)
T ss_pred cccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcc
Confidence 46777888999999999999999999999999999999999999999999999999999999999999999997
No 269
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.29 E-value=0.0038 Score=47.19 Aligned_cols=65 Identities=9% Similarity=0.003 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQ 76 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 76 (281)
.....+..++..+...|++++|+..+.+++..+|.+-.+|..+-.+|...|+...|+..|++...
T Consensus 60 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 60 LYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44567778888999999999999999999999999999999999999999999999999988754
No 270
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.28 E-value=0.0059 Score=51.66 Aligned_cols=99 Identities=10% Similarity=-0.040 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-hcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHH
Q 023501 16 QLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLK-RNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQ 94 (281)
Q Consensus 16 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~ 94 (281)
+|....+..-+.+..+.|...|.+|....+....+|...|..-+. .++.+.|...++.+++.-|.+...|..+..-+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 455666677777779999999999997666678999989988666 5677779999999999999999999999999999
Q ss_pred hcChHHHHHHHHHHHhhccC
Q 023501 95 RNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 95 ~g~~~~A~~~~~kal~~~p~ 114 (281)
+|+.+.|...|++++..-|.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~ 102 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPK 102 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSC
T ss_pred hCcHHHHHHHHHHHHHhcCc
Confidence 99999999999999987544
No 271
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=0.0039 Score=56.87 Aligned_cols=97 Identities=16% Similarity=0.177 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHH
Q 023501 15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV------PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLL 88 (281)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (281)
..+.+.|...|+-++|..++++|...+..-|.| +....+++.||+.+.+.+.|.+++.+|=+.+|.++-..+..
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 456788899999999999999999999887775 57888999999999999999999999999999999999999
Q ss_pred HHHHHHhcChHHHHHHHHHHHhh
Q 023501 89 GQTLLQRNEYADGIKELEKALNL 111 (281)
Q Consensus 89 a~~~~~~g~~~~A~~~~~kal~~ 111 (281)
..+...-|.-++|+....+....
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhh
Confidence 99999999999999988776654
No 272
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.25 E-value=0.0002 Score=47.91 Aligned_cols=45 Identities=20% Similarity=0.253 Sum_probs=32.0
Q ss_pred ccCCcccccC-cee-cCCCcccccchHHhHhccC--CCCCCCCCCCcCC
Q 023501 210 CKITLDIFRD-PVI-TPSGVTYERAVILDHLDKV--GKFDPITREPLRE 254 (281)
Q Consensus 210 c~i~~~~~~~-pv~-~~~g~~~~~~~i~~~~~~~--~~~cP~~~~~~~~ 254 (281)
||.|.-.-.+ |++ -.|+|.|=.-||.+|+... ...||+||+++..
T Consensus 35 Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 35 CPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 4444433333 554 5699999999999999853 3369999998653
No 273
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00026 Score=59.42 Aligned_cols=47 Identities=15% Similarity=0.106 Sum_probs=41.0
Q ss_pred CcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcC
Q 023501 206 DYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLR 253 (281)
Q Consensus 206 ~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~ 253 (281)
.+-.||||-.=-...|.+||||.-|+.||.+|+.+... |=.|+..+.
T Consensus 421 Ed~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~-CFfCktTv~ 467 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKR-CFFCKTTVI 467 (489)
T ss_pred ccccCcceecccchhhccCCCCchHHHHHHHHHhcCCe-eeEecceee
Confidence 57789999988888899999999999999999998874 888876654
No 274
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.22 E-value=0.0017 Score=54.26 Aligned_cols=82 Identities=13% Similarity=0.110 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHH
Q 023501 10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLG 89 (281)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la 89 (281)
.-+.|......+....+.|+-++|...|..|+.+.|+++.++...|...-..++.-+|-.+|-+|+.++|.+.+|+.+.+
T Consensus 112 ~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 112 KVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 34456666677888899999999999999999999999999999999998889999999999999999999999988876
Q ss_pred HH
Q 023501 90 QT 91 (281)
Q Consensus 90 ~~ 91 (281)
..
T Consensus 192 RT 193 (472)
T KOG3824|consen 192 RT 193 (472)
T ss_pred cc
Confidence 54
No 275
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.22 E-value=0.011 Score=44.90 Aligned_cols=103 Identities=15% Similarity=0.019 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHH
Q 023501 10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLG 89 (281)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la 89 (281)
+......+.+........++..++...+...-.+.|..+.+-..-|..+...|+|.+|+..++.+..-.|.++.+--.++
T Consensus 6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA 85 (160)
T PF09613_consen 6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLA 85 (160)
T ss_pred cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34566788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcChHHHHHHHHHHHhhcc
Q 023501 90 QTLLQRNEYADGIKELEKALNLGR 113 (281)
Q Consensus 90 ~~~~~~g~~~~A~~~~~kal~~~p 113 (281)
.++..+|+.+-=.. -.+++..++
T Consensus 86 ~CL~~~~D~~Wr~~-A~evle~~~ 108 (160)
T PF09613_consen 86 LCLYALGDPSWRRY-ADEVLESGA 108 (160)
T ss_pred HHHHHcCChHHHHH-HHHHHhcCC
Confidence 99999998654322 334555543
No 276
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.22 E-value=0.008 Score=41.43 Aligned_cols=66 Identities=15% Similarity=0.007 Sum_probs=38.6
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc--hhHHHHHHHHHHHhcChH
Q 023501 34 IDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS--VKGHYLLGQTLLQRNEYA 99 (281)
Q Consensus 34 ~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~--~~a~~~la~~~~~~g~~~ 99 (281)
+..+++++..+|+|..+.+.+|..+...|++++|++.+-.+++.++.+ ..+.-.+-.++..+|.-+
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 455666667777777777777777777777777777777777776655 444444444455555433
No 277
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.00022 Score=60.30 Aligned_cols=46 Identities=24% Similarity=0.394 Sum_probs=38.5
Q ss_pred CcccccCCcccccC-------------ceecCCCcccccchHHhHhccCCCCCCCCCCCc
Q 023501 206 DYLCCKITLDIFRD-------------PVITPSGVTYERAVILDHLDKVGKFDPITREPL 252 (281)
Q Consensus 206 ~~~~c~i~~~~~~~-------------pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~ 252 (281)
++-.|.||.+=|.. |--+||||.+--.|+..|++..+ +||+||.|+
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQ-TCPICr~p~ 344 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQ-TCPICRRPV 344 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhcc-CCCcccCcc
Confidence 56789999866443 35689999999999999999888 699999985
No 278
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0054 Score=49.72 Aligned_cols=73 Identities=18% Similarity=0.160 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhH
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKG 84 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a 84 (281)
...-.+.+....++..|+|-+++++....+...|++..+|+.||.++...=+..+|..|+.++++++|.-..+
T Consensus 228 ~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 228 MITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred hhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 3445677889999999999999999999999999999999999999999999999999999999999965443
No 279
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=0.003 Score=52.64 Aligned_cols=86 Identities=15% Similarity=0.156 Sum_probs=78.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHH
Q 023501 23 YYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGI 102 (281)
Q Consensus 23 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~ 102 (281)
.+.+..+|.+||++.+.-.+..|.+-..++.+|.||+...+|..|...+++...+.|...+..+..++.+++.+.+.+|+
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHH
Q 023501 103 KELEKA 108 (281)
Q Consensus 103 ~~~~ka 108 (281)
......
T Consensus 99 rV~~~~ 104 (459)
T KOG4340|consen 99 RVAFLL 104 (459)
T ss_pred HHHHHh
Confidence 776544
No 280
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.00018 Score=57.31 Aligned_cols=36 Identities=42% Similarity=0.818 Sum_probs=31.3
Q ss_pred CCcccccCCcccccCceecCCCcccccchHHhHhcc
Q 023501 205 PDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDK 240 (281)
Q Consensus 205 p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~ 240 (281)
-+.-.|.+|...+++||++|+|+.|||.||.+++-.
T Consensus 41 K~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 41 KPFDCCSLTLQPCRDPVITPDGYLFDREAILEYILA 76 (303)
T ss_pred CCcceeeeecccccCCccCCCCeeeeHHHHHHHHHH
Confidence 334467999999999999999999999999998653
No 281
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.20 E-value=0.00054 Score=38.41 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH
Q 023501 51 WTNRALCHLKRNDWTKVEADCRKAI 75 (281)
Q Consensus 51 ~~~~a~~~~~~~~~~~A~~~~~~al 75 (281)
|.++|.+|..+|+|++|+..+++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555544
No 282
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.20 E-value=0.018 Score=56.85 Aligned_cols=102 Identities=15% Similarity=0.049 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc-----hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc------c
Q 023501 13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV-----PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD------S 81 (281)
Q Consensus 13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~------~ 81 (281)
.+.....+|..++..|++++|..++.+++...+.. ..+...+|.++...|++++|...+.+++..... .
T Consensus 451 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~ 530 (903)
T PRK04841 451 QAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYA 530 (903)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHH
Confidence 34555667889999999999999999999865542 246678899999999999999999999876432 1
Q ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 82 VKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
..++..+|.++...|++++|...+.+++.+...
T Consensus 531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~ 563 (903)
T PRK04841 531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEE 563 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 346678899999999999999999999987543
No 283
>PLN03077 Protein ECB2; Provisional
Probab=97.19 E-value=0.0046 Score=60.67 Aligned_cols=95 Identities=12% Similarity=0.086 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHH
Q 023501 15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQ 94 (281)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~ 94 (281)
..+..+...+.+.|++++|...+++. ...|+ +.+|..+-.++...|+.+.+....+++++++|+++..|..++.+|..
T Consensus 626 ~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~ 703 (857)
T PLN03077 626 KHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYAD 703 (857)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH
Confidence 45666777777778888888777663 34454 55566665566667777888777888888888888888888888888
Q ss_pred hcChHHHHHHHHHHHhh
Q 023501 95 RNEYADGIKELEKALNL 111 (281)
Q Consensus 95 ~g~~~~A~~~~~kal~~ 111 (281)
.|+|++|.+......+.
T Consensus 704 ~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 704 AGKWDEVARVRKTMREN 720 (857)
T ss_pred CCChHHHHHHHHHHHHc
Confidence 88888888777766544
No 284
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.17 E-value=0.0085 Score=52.21 Aligned_cols=94 Identities=15% Similarity=0.261 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-------------c-----hHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 023501 15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN-------------V-----PIYWTNRALCHLKRNDWTKVEADCRKAIQ 76 (281)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-------------~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 76 (281)
++....|..+|++++|..|+.-|..|+++..+ + +-+-..+..||+.+++.+.|+....+.|-
T Consensus 177 ~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ 256 (569)
T PF15015_consen 177 QVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSIN 256 (569)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhh
Confidence 34455678889999999999888888877322 1 24566789999999999999999999999
Q ss_pred hcCcchhHHHHHHHHHHHhcChHHHHHHHHHH
Q 023501 77 LDHDSVKGHYLLGQTLLQRNEYADGIKELEKA 108 (281)
Q Consensus 77 l~p~~~~a~~~la~~~~~~g~~~~A~~~~~ka 108 (281)
++|.+..-|.+.|.++..+.+|.+|...+--+
T Consensus 257 lnP~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 257 LNPSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998776544
No 285
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.13 E-value=0.036 Score=45.44 Aligned_cols=72 Identities=11% Similarity=0.067 Sum_probs=64.7
Q ss_pred chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc---hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCC
Q 023501 47 VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS---VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPK 118 (281)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~ 118 (281)
-+..+++-|...+..|+|++|...++.+....|.. .++...++.+++..+++++|+...++.+.+.|.+.+.
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence 35778888888999999999999999999888754 6899999999999999999999999999999986664
No 286
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.12 E-value=0.019 Score=54.42 Aligned_cols=91 Identities=10% Similarity=0.034 Sum_probs=82.4
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHH
Q 023501 24 YFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIK 103 (281)
Q Consensus 24 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~ 103 (281)
....++|..|+...++.+...|+...+....|..+.++|.+++|...++..-...+++...+-.+-.+|..+|++++|..
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 45678999999999999999999998888899999999999999966666666677888899999999999999999999
Q ss_pred HHHHHHhhccC
Q 023501 104 ELEKALNLGRG 114 (281)
Q Consensus 104 ~~~kal~~~p~ 114 (281)
.|++++..+|+
T Consensus 99 ~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 99 LYERANQKYPS 109 (932)
T ss_pred HHHHHHhhCCc
Confidence 99999999876
No 287
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.10 E-value=0.0012 Score=35.02 Aligned_cols=30 Identities=27% Similarity=0.225 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhcC
Q 023501 50 YWTNRALCHLKRNDWTKVEADCRKAIQLDH 79 (281)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p 79 (281)
++.++|.++..+|+++.|...++++++++|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 445555555555555555555555555554
No 288
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.07 E-value=0.0013 Score=35.70 Aligned_cols=31 Identities=13% Similarity=0.293 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 84 GHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 84 a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
+++.+|.++..+|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4455555555555555555555555555443
No 289
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.04 E-value=0.0015 Score=35.47 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc
Q 023501 50 YWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80 (281)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~ 80 (281)
+++++|.++.++|++++|+..++++++.-|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4555666666666666666666666666554
No 290
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.01 E-value=0.012 Score=49.86 Aligned_cols=110 Identities=13% Similarity=-0.010 Sum_probs=86.2
Q ss_pred hhhhchHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch-
Q 023501 5 AGLAGVAKQAEQLRLDGNYYFS-KDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV- 82 (281)
Q Consensus 5 ~~~~~~~~~a~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~- 82 (281)
.+.......-.+|...|..-+. .++.+.|...|+.++...|.+..+|......+..+|+.+.|...+++++..-|...
T Consensus 26 ~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~ 105 (280)
T PF05843_consen 26 RARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQ 105 (280)
T ss_dssp HHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHH
T ss_pred HHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhH
Confidence 3443333445677777887666 67777799999999999999999999999999999999999999999998876554
Q ss_pred --hHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 83 --KGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 83 --~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
..|.....--...|+.+.......++.++.|.
T Consensus 106 ~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 106 SKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp CHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 56777777777889999999999999888665
No 291
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.99 E-value=0.0098 Score=56.25 Aligned_cols=109 Identities=10% Similarity=-0.098 Sum_probs=89.9
Q ss_pred hhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhH
Q 023501 5 AGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKG 84 (281)
Q Consensus 5 ~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a 84 (281)
...+..|+..-+....|..+++.|++++|..+++..-...++|-..+..+-.||..+|++++|...|++++..+|. -+.
T Consensus 34 kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eel 112 (932)
T KOG2053|consen 34 KLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EEL 112 (932)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHH
Confidence 3344556666666677899999999999998888877778889999999999999999999999999999999999 888
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 85 HYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
.+.+-.+|..-+.|.+--+.--+..+.-|+
T Consensus 113 l~~lFmayvR~~~yk~qQkaa~~LyK~~pk 142 (932)
T KOG2053|consen 113 LYHLFMAYVREKSYKKQQKAALQLYKNFPK 142 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 888889999988887665555555555444
No 292
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.08 Score=42.85 Aligned_cols=105 Identities=16% Similarity=0.114 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc-----
Q 023501 14 AEQLRLDGNYYFSK-DRYGAAIDAYTEAITLCPNV------PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS----- 81 (281)
Q Consensus 14 a~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~----- 81 (281)
|..+..+|..|-.. .++++||.+|++|-+....+ ..++...|..-..+++|.+|++.|+++....-++
T Consensus 113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKy 192 (288)
T KOG1586|consen 113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKY 192 (288)
T ss_pred HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence 44556777777655 89999999999998775442 2456666776678899999999999988766443
Q ss_pred -hhHH-HHHHHHHHHhcChHHHHHHHHHHHhhccCCCCC
Q 023501 82 -VKGH-YLLGQTLLQRNEYADGIKELEKALNLGRGAKPK 118 (281)
Q Consensus 82 -~~a~-~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~ 118 (281)
.+.| +..|.+++-..+.-.+...+++...++|...+.
T Consensus 193 s~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 193 SAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 3444 445677777788889999999999999987765
No 293
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.96 E-value=0.035 Score=54.86 Aligned_cols=101 Identities=15% Similarity=0.109 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---------chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc---
Q 023501 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN---------VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS--- 81 (281)
Q Consensus 14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~--- 81 (281)
+......+..++..|++++|...+..+....+. ...+...+|.++...|++++|...+++++...|..
T Consensus 409 ~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 488 (903)
T PRK04841 409 PRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYY 488 (903)
T ss_pred cchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHH
Confidence 334456788889999999999999988765322 23455667888999999999999999999865432
Q ss_pred --hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 82 --VKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 82 --~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
..+...+|.++...|++++|...+.+++.....
T Consensus 489 ~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~ 523 (903)
T PRK04841 489 SRIVATSVLGEVHHCKGELARALAMMQQTEQMARQ 523 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 246678899999999999999999999987554
No 294
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.90 E-value=0.0064 Score=55.07 Aligned_cols=91 Identities=15% Similarity=0.128 Sum_probs=82.0
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHH
Q 023501 25 FSKDRYGAAIDAYTEAITLCPNV-PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIK 103 (281)
Q Consensus 25 ~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~ 103 (281)
--.|+...|+.++..|+...|.. ..-..++|+.+.+-|-..+|-..+.+++.++..-+-.++.+|.++..+.+.+.|++
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 35688999999999999998864 45678899999999989999999999999998888899999999999999999999
Q ss_pred HHHHHHhhccCC
Q 023501 104 ELEKALNLGRGA 115 (281)
Q Consensus 104 ~~~kal~~~p~~ 115 (281)
.|..|++++|+.
T Consensus 698 ~~~~a~~~~~~~ 709 (886)
T KOG4507|consen 698 AFRQALKLTTKC 709 (886)
T ss_pred HHHHHHhcCCCC
Confidence 999999998873
No 295
>PLN03077 Protein ECB2; Provisional
Probab=96.89 E-value=0.045 Score=53.87 Aligned_cols=53 Identities=6% Similarity=0.015 Sum_probs=39.4
Q ss_pred HHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhc
Q 023501 56 LCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLG 112 (281)
Q Consensus 56 ~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~ 112 (281)
..|.+.|++++|...++.. +.+...|..+...|...|+.++|+..|++..+..
T Consensus 532 ~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g 584 (857)
T PLN03077 532 DLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG 584 (857)
T ss_pred HHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4555566666666665554 4566778888899999999999999999888753
No 296
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.88 E-value=0.064 Score=47.73 Aligned_cols=98 Identities=10% Similarity=0.098 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHH
Q 023501 13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTL 92 (281)
Q Consensus 13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~ 92 (281)
.+..|...|....++.+...|.+.+-.||...|.+-. +-..-..-.++++++.+...|++-|+-+|.+-.+|...|..-
T Consensus 403 FaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~Kl-Fk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE 481 (677)
T KOG1915|consen 403 FAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKL-FKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELE 481 (677)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhH-HHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHH
Confidence 3566777788888999999999999999999998543 333344567889999999999999999999999999999999
Q ss_pred HHhcChHHHHHHHHHHHhh
Q 023501 93 LQRNEYADGIKELEKALNL 111 (281)
Q Consensus 93 ~~~g~~~~A~~~~~kal~~ 111 (281)
..+|+.+.|...|+-|+..
T Consensus 482 ~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 482 TSLGDTDRARAIFELAISQ 500 (677)
T ss_pred HHhhhHHHHHHHHHHHhcC
Confidence 9999999999999988876
No 297
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.87 E-value=0.029 Score=43.96 Aligned_cols=101 Identities=18% Similarity=0.176 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc--ch---
Q 023501 11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN---VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD--SV--- 82 (281)
Q Consensus 11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--~~--- 82 (281)
.+....+..+|.-|++.|++++|++.|.++.+...+ -...+.++-.+.+..++|..+.....+|-.+-.. +.
T Consensus 33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~ 112 (177)
T PF10602_consen 33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERR 112 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHH
Confidence 445678899999999999999999999998887544 2467777888888999999999999998665432 22
Q ss_pred -hHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501 83 -KGHYLLGQTLLQRNEYADGIKELEKALNL 111 (281)
Q Consensus 83 -~a~~~la~~~~~~g~~~~A~~~~~kal~~ 111 (281)
+.....|..++..++|..|...|..+...
T Consensus 113 nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 113 NRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 23445577788889999999998876533
No 298
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.87 E-value=0.0024 Score=39.13 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501 83 KGHYLLGQTLLQRNEYADGIKELEKALNLGRGA 115 (281)
Q Consensus 83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~ 115 (281)
+.+|.+|..++.+|+|++|....+.++++.|++
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence 467999999999999999999999999998883
No 299
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=96.84 E-value=0.00044 Score=59.71 Aligned_cols=37 Identities=22% Similarity=0.400 Sum_probs=32.9
Q ss_pred CCcccccCCcccccCceecCCCcccccchHHhHhccC
Q 023501 205 PDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKV 241 (281)
Q Consensus 205 p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~ 241 (281)
..++.||||+..+.+|+++||||+.|+.|-...+.+.
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~t 38 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILVQT 38 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhcccC
Confidence 4578999999999999999999999999998776554
No 300
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.84 E-value=0.0004 Score=59.30 Aligned_cols=45 Identities=24% Similarity=0.341 Sum_probs=38.8
Q ss_pred cccCCcccccCceecCCCcccccchHHhHhccC-CCCCCCCCCCcC
Q 023501 209 CCKITLDIFRDPVITPSGVTYERAVILDHLDKV-GKFDPITREPLR 253 (281)
Q Consensus 209 ~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~-~~~cP~~~~~~~ 253 (281)
.|.||-+--+|--+-||||-.|-.||..|-.+. +.+||.||-.+.
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence 599999999998899999999999999998544 557999996654
No 301
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.83 E-value=0.0047 Score=57.61 Aligned_cols=104 Identities=22% Similarity=0.341 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----chHHHHHHHHHHHHh--cCHHHHHHHHHHHHhhcCcchhHH
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN----VPIYWTNRALCHLKR--NDWTKVEADCRKAIQLDHDSVKGH 85 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~a~~~~~~--~~~~~A~~~~~~al~l~p~~~~a~ 85 (281)
..+..++..|+..+++++|.+|.-.|..++.+-|. .+....+.+.|++++ |+|..++..++-|+...|...+++
T Consensus 51 ~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~L 130 (748)
T KOG4151|consen 51 SRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKAL 130 (748)
T ss_pred HHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHH
Confidence 45667889999999999999999999999999885 457888899888765 589999999999999999999999
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501 86 YLLGQTLLQRNEYADGIKELEKALNLGRGA 115 (281)
Q Consensus 86 ~~la~~~~~~g~~~~A~~~~~kal~~~p~~ 115 (281)
+..+.+|..+++++-|+..+.-.....|.+
T Consensus 131 l~r~~~y~al~k~d~a~rdl~i~~~~~p~~ 160 (748)
T KOG4151|consen 131 LKRARKYEALNKLDLAVRDLRIVEKMDPSN 160 (748)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 999999999999999999977777777764
No 302
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.78 E-value=0.0022 Score=51.36 Aligned_cols=57 Identities=19% Similarity=0.312 Sum_probs=31.4
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501 25 FSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS 81 (281)
Q Consensus 25 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 81 (281)
.+.++.+.|.+.|.+++++.|.+...|..+|....+.|+++.|.+.+++.++++|.+
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 444555555555555555555555555555555555555555555555555555543
No 303
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.75 E-value=0.015 Score=49.33 Aligned_cols=97 Identities=11% Similarity=0.075 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCch---HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHH
Q 023501 11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL-CPNVP---IYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHY 86 (281)
Q Consensus 11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~ 86 (281)
|...-+++.--..+|..|+...-...+.+.+-. +|+.| .+.--.|-++...|-|++|.+..++|++++|.+.-+..
T Consensus 134 PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~H 213 (491)
T KOG2610|consen 134 PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASH 213 (491)
T ss_pred chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHH
Confidence 333333333344444444444444444444433 33332 22223455666777777777777777777777777777
Q ss_pred HHHHHHHHhcChHHHHHHHHH
Q 023501 87 LLGQTLLQRNEYADGIKELEK 107 (281)
Q Consensus 87 ~la~~~~~~g~~~~A~~~~~k 107 (281)
.++.++...|++.++.+...+
T Consensus 214 a~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 214 AKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHHHhcchhhhHHHHHHh
Confidence 777777777777777665543
No 304
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.73 E-value=0.0029 Score=56.02 Aligned_cols=101 Identities=16% Similarity=0.116 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHhCCC--------chHHHHHHHHHHHHhcCHHHHHHHHHHHHh------
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEA-ITLCPN--------VPIYWTNRALCHLKRNDWTKVEADCRKAIQ------ 76 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a-l~~~p~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~------ 76 (281)
+.+..+...++.+|-.|+|..|++.+... +...|. ...+|.|+|-+++++|.|.-+..+|.+|++
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence 45677888899999999999999987543 343444 456789999999999999999999999996
Q ss_pred ---hcC---------cchhHHHHHHHHHHHhcChHHHHHHHHHHHhhc
Q 023501 77 ---LDH---------DSVKGHYLLGQTLLQRNEYADGIKELEKALNLG 112 (281)
Q Consensus 77 ---l~p---------~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~ 112 (281)
+.| ...+..|+.|..|.+.|++-.|.++|.++...-
T Consensus 318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf 365 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF 365 (696)
T ss_pred hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH
Confidence 112 356789999999999999999999999998773
No 305
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.73 E-value=0.073 Score=48.48 Aligned_cols=87 Identities=9% Similarity=0.099 Sum_probs=76.8
Q ss_pred hcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc----hhHHHHHHHHHHHhcChHHH
Q 023501 26 SKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS----VKGHYLLGQTLLQRNEYADG 101 (281)
Q Consensus 26 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~----~~a~~~la~~~~~~g~~~~A 101 (281)
...+.+.|...+.......|+.+..+...|..+...|+.++|+..+++++.....+ .-.++.+|.++..+++|++|
T Consensus 245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 34567889999999999999999999999999999999999999999999655443 34678899999999999999
Q ss_pred HHHHHHHHhhc
Q 023501 102 IKELEKALNLG 112 (281)
Q Consensus 102 ~~~~~kal~~~ 112 (281)
...+.+..+.+
T Consensus 325 ~~~f~~L~~~s 335 (468)
T PF10300_consen 325 AEYFLRLLKES 335 (468)
T ss_pred HHHHHHHHhcc
Confidence 99999998873
No 306
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.67 E-value=0.025 Score=38.97 Aligned_cols=52 Identities=19% Similarity=0.336 Sum_probs=44.3
Q ss_pred HHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCC
Q 023501 67 VEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPK 118 (281)
Q Consensus 67 A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~ 118 (281)
.+..+++++..+|++..+.+.+|..+...|++++|++.+..++..+++..+.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~ 58 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDD 58 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccccc
Confidence 4567889999999999999999999999999999999999999998876554
No 307
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.0012 Score=53.07 Aligned_cols=52 Identities=8% Similarity=0.135 Sum_probs=42.7
Q ss_pred CCcccccCCcccccC----ceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcc
Q 023501 205 PDYLCCKITLDIFRD----PVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVP 259 (281)
Q Consensus 205 p~~~~c~i~~~~~~~----pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~ 259 (281)
-..|+|||++-.|.. -++.+|||+|.-..+.+.- ...|++|+.++..+++++
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvIv 164 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVIV 164 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeEe
Confidence 457999999999987 4568999999999998875 336999999999876443
No 308
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.61 E-value=0.038 Score=44.70 Aligned_cols=89 Identities=15% Similarity=0.131 Sum_probs=68.7
Q ss_pred HHhcCCHHHHHHHHHHHHHh----CCC---chHHHHHHHHHHHHhcC-------HHHHHHHHHHHHhhcC------cchh
Q 023501 24 YFSKDRYGAAIDAYTEAITL----CPN---VPIYWTNRALCHLKRND-------WTKVEADCRKAIQLDH------DSVK 83 (281)
Q Consensus 24 ~~~~~~~~~A~~~~~~al~~----~p~---~~~~~~~~a~~~~~~~~-------~~~A~~~~~~al~l~p------~~~~ 83 (281)
+-....+++|+..|.-|+-. ... -+.++..+|.+|-.+|+ +..|+..|.+|++... +...
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 34455778999999888754 112 36788888999998888 5567777777776553 2357
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhhc
Q 023501 84 GHYLLGQTLLQRNEYADGIKELEKALNLG 112 (281)
Q Consensus 84 a~~~la~~~~~~g~~~~A~~~~~kal~~~ 112 (281)
..|.+|.+...+|++++|..+|.+++...
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 88999999999999999999999999873
No 309
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.59 E-value=0.021 Score=50.99 Aligned_cols=57 Identities=21% Similarity=0.141 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhcCc--chhHHHHHHHHHHHhcChHHHHHHHHHH
Q 023501 52 TNRALCHLKRNDWTKVEADCRKAIQLDHD--SVKGHYLLGQTLLQRNEYADGIKELEKA 108 (281)
Q Consensus 52 ~~~a~~~~~~~~~~~A~~~~~~al~l~p~--~~~a~~~la~~~~~~g~~~~A~~~~~ka 108 (281)
..+|+|..++|+.++|++.++..++..|. +...++++..++..++.|.++...+.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 34556666666666666666666655543 3445566666666666666665555554
No 310
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=0.3 Score=39.95 Aligned_cols=99 Identities=14% Similarity=0.083 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc-----Ccchh
Q 023501 15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV------PIYWTNRALCHLKRNDWTKVEADCRKAIQLD-----HDSVK 83 (281)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-----p~~~~ 83 (281)
..+..-+..+-..++|++|...+.+|++...++ +..|-..+.....+..|.++...+++|..+- |+...
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAA 111 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAA 111 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHH
Confidence 344445556667889999999999998654443 4667777888888999999999999998874 33333
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhhcc
Q 023501 84 GHYLLGQTLLQRNEYADGIKELEKALNLGR 113 (281)
Q Consensus 84 a~~~la~~~~~~g~~~~A~~~~~kal~~~p 113 (281)
.-...+--.....++++|++.|++++.+-.
T Consensus 112 maleKAak~lenv~Pd~AlqlYqralavve 141 (308)
T KOG1585|consen 112 MALEKAAKALENVKPDDALQLYQRALAVVE 141 (308)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Confidence 233333334556679999999999998843
No 311
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.56 E-value=0.0041 Score=32.72 Aligned_cols=32 Identities=38% Similarity=0.565 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 023501 15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN 46 (281)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 46 (281)
..+..+|..++..+++++|+..|++++..+|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 46788999999999999999999999998885
No 312
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=96.55 E-value=0.037 Score=36.62 Aligned_cols=66 Identities=12% Similarity=0.148 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchH---HHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPI---YWTNRALCHLKRNDWTKVEADCRKAIQL 77 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~a~~~~~~~~~~~A~~~~~~al~l 77 (281)
..+....+.|..+|.+++.++|+..+++++...++... ++-.+..+|...|+|.+++++...=+.+
T Consensus 4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777889999999999999999999999998877554 5555667888899999988877665544
No 313
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.54 E-value=0.064 Score=40.24 Aligned_cols=90 Identities=13% Similarity=0.007 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHH
Q 023501 11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQ 90 (281)
Q Consensus 11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~ 90 (281)
......+.+.........+..++...+...-.+.|+.+.+-..-|..+...|+|.+|+..++....-.+..+-+.-.++.
T Consensus 7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~ 86 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLAL 86 (153)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHH
Confidence 34456677777777889999999999999989999999999999999999999999999999999999999988899999
Q ss_pred HHHHhcChHH
Q 023501 91 TLLQRNEYAD 100 (281)
Q Consensus 91 ~~~~~g~~~~ 100 (281)
++..+|+.+-
T Consensus 87 CL~al~Dp~W 96 (153)
T TIGR02561 87 CLNAKGDAEW 96 (153)
T ss_pred HHHhcCChHH
Confidence 9999998653
No 314
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.51 E-value=0.34 Score=39.34 Aligned_cols=103 Identities=22% Similarity=0.239 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-----C-chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc--
Q 023501 10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCP-----N-VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS-- 81 (281)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-----~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-- 81 (281)
-.+.++.+..-|+.|-..+++..|=..|-+|-+..- + -+..|.--+.||.+. +.++|+..+++++++--+-
T Consensus 30 ~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Gr 108 (288)
T KOG1586|consen 30 YEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGR 108 (288)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhH
Confidence 345566777778888888888888888888765521 1 356777777777554 9999999999999886432
Q ss_pred ----hhHHHHHHHHHHHh-cChHHHHHHHHHHHhhcc
Q 023501 82 ----VKGHYLLGQTLLQR-NEYADGIKELEKALNLGR 113 (281)
Q Consensus 82 ----~~a~~~la~~~~~~-g~~~~A~~~~~kal~~~p 113 (281)
.+.+..+|++|..- .++++|+.+|+++-+.-.
T Consensus 109 f~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk 145 (288)
T KOG1586|consen 109 FTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYK 145 (288)
T ss_pred HHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHc
Confidence 44566888888775 889999999998877643
No 315
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=96.44 E-value=0.003 Score=51.13 Aligned_cols=63 Identities=19% Similarity=0.236 Sum_probs=47.2
Q ss_pred cccccCCcccccCcee-cCCCcccccchHHhHhccC-CCCCCCCCCC----cCCCCCcccHHHHHHHHH
Q 023501 207 YLCCKITLDIFRDPVI-TPSGVTYERAVILDHLDKV-GKFDPITREP----LRESQLVPNLAIKEAVRA 269 (281)
Q Consensus 207 ~~~c~i~~~~~~~pv~-~~~g~~~~~~~i~~~~~~~-~~~cP~~~~~----~~~~~~~~n~~l~~~i~~ 269 (281)
.+.||++.....+||+ ..|||.|.|+.|...+... ...||+-+.+ +....+.+...+..-|++
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~~~~~~~~~~l~~d~el~~kIr~ 244 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCENPYYIQPGHLDEDKELQQKIRQ 244 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCCccccccccccCchHHHHHHHHH
Confidence 4779999999999998 5699999999999999763 2359998765 223356666556555543
No 316
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.44 E-value=0.069 Score=50.50 Aligned_cols=63 Identities=16% Similarity=0.137 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHhcCcCCCCCCCCcccccCCcccccCcee-cCCCcccccchHHhHhccCCCCCCCCCC
Q 023501 181 HLKQMEALRQVFRKAAEDDTPAEVPDYLCCKITLDIFRDPVI-TPSGVTYERAVILDHLDKVGKFDPITRE 250 (281)
Q Consensus 181 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~~c~i~~~~~~~pv~-~~~g~~~~~~~i~~~~~~~~~~cP~~~~ 250 (281)
+.+.++...+.++......++.+ .-.|..|.-.+.-|++ -.|||+|=+.|++ + +...||.|.-
T Consensus 817 yk~~i~e~r~~l~~lr~sa~i~q---~skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~-~~~~CP~C~~ 880 (933)
T KOG2114|consen 817 YKKDIEEKRQELETLRTSAQIFQ---VSKCSACEGTLDLPFVHFLCGHSYHQHCLE---D-KEDKCPKCLP 880 (933)
T ss_pred HHHHHHHHHHHHHHhhcccceee---eeeecccCCccccceeeeecccHHHHHhhc---c-CcccCCccch
Confidence 34444444444444433344433 3579999999999987 6899999999999 3 3335999975
No 317
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.40 E-value=0.0063 Score=48.84 Aligned_cols=58 Identities=17% Similarity=0.231 Sum_probs=54.6
Q ss_pred HHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 57 CHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 57 ~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
...+-++.+.|.+.+.+|+.+.|.|...|+++|......|+++.|...|++.++++|.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 3456789999999999999999999999999999999999999999999999999986
No 318
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.0028 Score=54.17 Aligned_cols=52 Identities=33% Similarity=0.585 Sum_probs=46.6
Q ss_pred cccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcc
Q 023501 207 YLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVP 259 (281)
Q Consensus 207 ~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~ 259 (281)
...|.+++..|.+||.+.+|..|+-..|..||...+ +-|++|+++...+|++
T Consensus 40 ~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk~g-~nP~tG~kl~~~dLIk 91 (518)
T KOG0883|consen 40 FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKKHG-TNPITGQKLDGKDLIK 91 (518)
T ss_pred hhhceeccccccCcccccCCcEEeeehhhHHHHHcC-CCCCCCCcccccccee
Confidence 456899999999999999999999999999999877 4899999988877766
No 319
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.31 E-value=0.16 Score=46.48 Aligned_cols=111 Identities=15% Similarity=0.079 Sum_probs=90.2
Q ss_pred hhhchHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501 6 GLAGVAKQAEQLRLDGNYY-FSKDRYGAAIDAYTEAITLCPNV--PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV 82 (281)
Q Consensus 6 ~~~~~~~~a~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 82 (281)
+.+..+.+...+ .++..| -.+|+..+|..+|..|+-..|.. ..++..+|.++..+|-..+|--.+..|+.-.|...
T Consensus 205 glq~~~~sw~lH-~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t 283 (886)
T KOG4507|consen 205 GLQKNTSSWVLH-NMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFT 283 (886)
T ss_pred hhhcCchhHHHH-HHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCcccc
Confidence 334344444444 444444 47899999999999999988764 36788899999999999999888888888888888
Q ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501 83 KGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP 117 (281)
Q Consensus 83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~ 117 (281)
.-+|-+|.++..+|.+...+..|..+.+.+|....
T Consensus 284 ~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q 318 (886)
T KOG4507|consen 284 SNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQ 318 (886)
T ss_pred ccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhH
Confidence 88999999999999999999999999999887433
No 320
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.00069 Score=40.66 Aligned_cols=45 Identities=24% Similarity=0.278 Sum_probs=35.9
Q ss_pred cccCCcccccCceecCCCcc-cccchHHhHhccCCCCCCCCCCCcC
Q 023501 209 CCKITLDIFRDPVITPSGVT-YERAVILDHLDKVGKFDPITREPLR 253 (281)
Q Consensus 209 ~c~i~~~~~~~pv~~~~g~~-~~~~~i~~~~~~~~~~cP~~~~~~~ 253 (281)
.|.||.+--.|-|+-.|||. .|-.|=.+.++.....||+||.|+.
T Consensus 9 ECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 9 ECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 48899887777778889985 7899988888755546999998764
No 321
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.23 E-value=0.11 Score=46.57 Aligned_cols=93 Identities=16% Similarity=0.052 Sum_probs=71.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC--------------c-----
Q 023501 20 DGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDH--------------D----- 80 (281)
Q Consensus 20 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p--------------~----- 80 (281)
.-....+..+++.-++.-.+|++++|+-+.+|..+|.= ......+|...+++|++... .
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~ 251 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWH 251 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhh
Confidence 34667889999999999999999999999999888752 12235566666666655321 0
Q ss_pred ------chhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 81 ------SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 81 ------~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
.+.+..++|.+..++|+.++|++.+...++..|.
T Consensus 252 ~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~ 291 (539)
T PF04184_consen 252 RRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN 291 (539)
T ss_pred ccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc
Confidence 1445678999999999999999999999988664
No 322
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.0028 Score=54.37 Aligned_cols=49 Identities=14% Similarity=0.188 Sum_probs=38.5
Q ss_pred CCcccccCCcccccCce-----e---cCCCcccccchHHhHhccCC------CCCCCCCCCcC
Q 023501 205 PDYLCCKITLDIFRDPV-----I---TPSGVTYERAVILDHLDKVG------KFDPITREPLR 253 (281)
Q Consensus 205 p~~~~c~i~~~~~~~pv-----~---~~~g~~~~~~~i~~~~~~~~------~~cP~~~~~~~ 253 (281)
-.+..|.||++...+++ . .+|.|+||..||..|-.... ..||.||.+..
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 45788999999888877 3 56999999999999973222 25999997754
No 323
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.11 E-value=0.001 Score=62.49 Aligned_cols=47 Identities=21% Similarity=0.335 Sum_probs=39.7
Q ss_pred ccccCCcccccCceecCCCcccccchHHhHhccCCC-CCCCCCCCcCCC
Q 023501 208 LCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGK-FDPITREPLRES 255 (281)
Q Consensus 208 ~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~-~cP~~~~~~~~~ 255 (281)
+.|++|.+ ...||+++|||.||..|+...++.... .||.|+..+...
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~ 502 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEK 502 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHH
Confidence 78999999 888999999999999999999875432 499999776543
No 324
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.0034 Score=51.68 Aligned_cols=45 Identities=18% Similarity=0.140 Sum_probs=35.5
Q ss_pred cccCCc-ccccCce----ecCCCcccccchHHhHhccCCCCCCCCCCCcC
Q 023501 209 CCKITL-DIFRDPV----ITPSGVTYERAVILDHLDKVGKFDPITREPLR 253 (281)
Q Consensus 209 ~c~i~~-~~~~~pv----~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~ 253 (281)
.||.|. ....+|- +.+|||+.|.+|.-.-+..++..||.|+..+.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLR 51 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILR 51 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence 378875 4445554 25899999999999999888777999998765
No 325
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.11 E-value=0.18 Score=50.56 Aligned_cols=99 Identities=12% Similarity=-0.003 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc--chhHHHHHHHHHH
Q 023501 16 QLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD--SVKGHYLLGQTLL 93 (281)
Q Consensus 16 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--~~~a~~~la~~~~ 93 (281)
++..+...|-+.+.+++|.++|+..+.........|...|..++..++-+.|...+.+|++--|. +.+..-.-|++-+
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 34455666666777777777777777777766777777777777777777777777777777776 6666666777777
Q ss_pred HhcChHHHHHHHHHHHhhccC
Q 023501 94 QRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 94 ~~g~~~~A~~~~~kal~~~p~ 114 (281)
+.|+.+.+...|+-.+...|.
T Consensus 1612 k~GDaeRGRtlfEgll~ayPK 1632 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPK 1632 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCcc
Confidence 777777777777777777666
No 326
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=96.08 E-value=0.061 Score=44.53 Aligned_cols=69 Identities=12% Similarity=0.062 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501 49 IYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP 117 (281)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~ 117 (281)
....++=..+...++++.|..+..+.+.++|.++.-+.-.|.+|.++|-+.-|++.+...++.+|+.+.
T Consensus 182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 455566667888899999999999999999999999999999999999999999999999999988443
No 327
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.08 E-value=0.0054 Score=37.31 Aligned_cols=46 Identities=11% Similarity=0.068 Sum_probs=33.4
Q ss_pred ccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCC
Q 023501 208 LCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQ 256 (281)
Q Consensus 208 ~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~ 256 (281)
..|-.|...-...+++||||..|+.|.--+ .-. .||+|+.++...+
T Consensus 8 ~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~--rYn-gCPfC~~~~~~~~ 53 (55)
T PF14447_consen 8 QPCVFCGFVGTKGTVLPCGHLICDNCFPGE--RYN-GCPFCGTPFEFDD 53 (55)
T ss_pred eeEEEccccccccccccccceeeccccChh--hcc-CCCCCCCcccCCC
Confidence 345566666677889999999999994322 112 3999999998654
No 328
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.07 E-value=0.7 Score=39.82 Aligned_cols=49 Identities=29% Similarity=0.470 Sum_probs=41.7
Q ss_pred cccccCCcccccC---ceecCCCcccccchHHhHhccCCCCCCCCCCCcCCC
Q 023501 207 YLCCKITLDIFRD---PVITPSGVTYERAVILDHLDKVGKFDPITREPLRES 255 (281)
Q Consensus 207 ~~~c~i~~~~~~~---pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~ 255 (281)
.+.|.|+++.|-+ |++.|+|++|....|+.|-...+..||.++..|...
T Consensus 330 ~Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~ 381 (389)
T KOG0396|consen 330 RLVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRYS 381 (389)
T ss_pred HHHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccHH
Confidence 4678888888876 999999999999999999877766799999887653
No 329
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.0068 Score=51.72 Aligned_cols=63 Identities=21% Similarity=0.283 Sum_probs=51.2
Q ss_pred ccccCCcccccC------ceecCCCcccccchHHhHhccCCCCCCCCCCC--cC---CCCCcccHHHHHHHHHH
Q 023501 208 LCCKITLDIFRD------PVITPSGVTYERAVILDHLDKVGKFDPITREP--LR---ESQLVPNLAIKEAVRAY 270 (281)
Q Consensus 208 ~~c~i~~~~~~~------pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~--~~---~~~~~~n~~l~~~i~~~ 270 (281)
..|-||.+-++. |-++.|||++|..|+...+..+...||.||.+ +. ...+..|+.+-+.++..
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 457777766664 77778999999999999998777679999998 33 34788999999998875
No 330
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.02 E-value=0.0022 Score=55.83 Aligned_cols=42 Identities=12% Similarity=0.251 Sum_probs=34.8
Q ss_pred cccCCcccccCce----ecCCCcccccchHHhHhccCCCCCCCCCCCcC
Q 023501 209 CCKITLDIFRDPV----ITPSGVTYERAVILDHLDKVGKFDPITREPLR 253 (281)
Q Consensus 209 ~c~i~~~~~~~pv----~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~ 253 (281)
+||+|.+-|-+-| ++.|.|+|--+|+..|+. . +||+||--.+
T Consensus 177 TCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--~-scpvcR~~q~ 222 (493)
T KOG0804|consen 177 TCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--S-SCPVCRYCQS 222 (493)
T ss_pred CcchhHhhcCccccceeeeecccccchHHHhhccc--C-cChhhhhhcC
Confidence 5999999998755 467999999999999985 3 4999986544
No 331
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.95 E-value=0.55 Score=41.17 Aligned_cols=101 Identities=14% Similarity=0.005 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCchHHHHHHHHHHHH---hcCHHHHHHHHHHH-HhhcCcchhHH
Q 023501 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITL----CPNVPIYWTNRALCHLK---RNDWTKVEADCRKA-IQLDHDSVKGH 85 (281)
Q Consensus 14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~a-l~l~p~~~~a~ 85 (281)
++...++-..|-..++|+.-+...+..-.. -++.+.+-...|.++-+ .|+.++|+..+..+ ....+.+++.+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 445556666778888898888888775444 33456677778888888 89999999999995 45567889999
Q ss_pred HHHHHHHHHh---------cChHHHHHHHHHHHhhccC
Q 023501 86 YLLGQTLLQR---------NEYADGIKELEKALNLGRG 114 (281)
Q Consensus 86 ~~la~~~~~~---------g~~~~A~~~~~kal~~~p~ 114 (281)
-.+|.+|-.+ ...++|+.+|.+++.+.|+
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~ 258 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD 258 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc
Confidence 9999998654 2478999999999999754
No 332
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.94 E-value=0.019 Score=32.81 Aligned_cols=28 Identities=11% Similarity=0.052 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 023501 50 YWTNRALCHLKRNDWTKVEADCRKAIQL 77 (281)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~al~l 77 (281)
++.++|.+|..+|++++|+..+++++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 4445555555555555555555555443
No 333
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.92 E-value=0.31 Score=43.77 Aligned_cols=86 Identities=8% Similarity=0.026 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcC-hHHHHHHHHHHHh
Q 023501 32 AAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNE-YADGIKELEKALN 110 (281)
Q Consensus 32 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~-~~~A~~~~~kal~ 110 (281)
.-+..|+.|....+.|..+|.+...-..+-+.+.+.-..|.+++...|+++..|...|.=.+..+. .+.|...+.++|.
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 445779999999999999999988777777779999999999999999999999999998888876 8899999999999
Q ss_pred hccCCCC
Q 023501 111 LGRGAKP 117 (281)
Q Consensus 111 ~~p~~~~ 117 (281)
.+|+++.
T Consensus 169 ~npdsp~ 175 (568)
T KOG2396|consen 169 FNPDSPK 175 (568)
T ss_pred cCCCChH
Confidence 9888444
No 334
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.90 E-value=0.38 Score=48.32 Aligned_cols=106 Identities=9% Similarity=0.050 Sum_probs=96.9
Q ss_pred hhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchh
Q 023501 6 GLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN--VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVK 83 (281)
Q Consensus 6 ~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 83 (281)
....-......|...|..++++++-++|...+.+|+..-|. ...+-..-|+.-++.|+.+.+...++-.+.-.|.-..
T Consensus 1556 m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtD 1635 (1710)
T KOG1070|consen 1556 MLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTD 1635 (1710)
T ss_pred HHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchh
Confidence 33333355678899999999999999999999999999998 7788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501 84 GHYLLGQTLLQRNEYADGIKELEKALNL 111 (281)
Q Consensus 84 a~~~la~~~~~~g~~~~A~~~~~kal~~ 111 (281)
.|.-+...-+..|+.+.+...|++++.+
T Consensus 1636 lW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1636 LWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999988
No 335
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=95.88 E-value=0.0061 Score=39.80 Aligned_cols=44 Identities=20% Similarity=0.302 Sum_probs=32.6
Q ss_pred cccCCcccccC----cee-cCCCcccccchHHhHhccCCCCCCCCCCCcC
Q 023501 209 CCKITLDIFRD----PVI-TPSGVTYERAVILDHLDKVGKFDPITREPLR 253 (281)
Q Consensus 209 ~c~i~~~~~~~----pv~-~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~ 253 (281)
.||-|..-|.. ||. --|.|.|=--||.+||...+ .||++++++.
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~-~CPld~q~w~ 81 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKG-VCPLDRQTWV 81 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCC-CCCCCCceeE
Confidence 35555543322 565 34999999999999999876 4999998864
No 336
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.83 E-value=0.075 Score=44.02 Aligned_cols=77 Identities=14% Similarity=0.083 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHH
Q 023501 15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQT 91 (281)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~ 91 (281)
+...++=..+...++++.|..+-.+.+.++|.++.-..-+|.+|.++|.+.-|+.++...+..-|+.+.+-...+..
T Consensus 182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 33445556778999999999999999999999999999999999999999999999999999999988876655554
No 337
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.0046 Score=53.21 Aligned_cols=61 Identities=20% Similarity=0.250 Sum_probs=45.7
Q ss_pred cccccCCcccccCce-----ecCCCcccccchHHhHhccCC-CCCCCCCCCcCCCCCcccHHHHHHH
Q 023501 207 YLCCKITLDIFRDPV-----ITPSGVTYERAVILDHLDKVG-KFDPITREPLRESQLVPNLAIKEAV 267 (281)
Q Consensus 207 ~~~c~i~~~~~~~pv-----~~~~g~~~~~~~i~~~~~~~~-~~cP~~~~~~~~~~~~~n~~l~~~i 267 (281)
..+||||.+-..-|+ .+.|||-|..+||+.|+-+.. ..||.|...-...++.+-..++...
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~qa 70 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQA 70 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHHH
Confidence 467999987666554 467999999999999995321 2499998877777777776665544
No 338
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.80 E-value=0.47 Score=39.84 Aligned_cols=45 Identities=16% Similarity=0.219 Sum_probs=36.4
Q ss_pred CcccccCCcccccC---ceecCCCcccccchHHhHhccCCC--CCCCCCC
Q 023501 206 DYLCCKITLDIFRD---PVITPSGVTYERAVILDHLDKVGK--FDPITRE 250 (281)
Q Consensus 206 ~~~~c~i~~~~~~~---pv~~~~g~~~~~~~i~~~~~~~~~--~cP~~~~ 250 (281)
+-|+||+..+.-.+ ||++.|||...+..+.+.-+.+.. .||.|-.
T Consensus 335 s~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 335 SLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred ceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 45899999887775 999999999999999887765432 4999943
No 339
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.79 E-value=0.12 Score=44.06 Aligned_cols=98 Identities=14% Similarity=0.104 Sum_probs=83.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhh-cCcc---hhHHHHHHHHH
Q 023501 17 LRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQL-DHDS---VKGHYLLGQTL 92 (281)
Q Consensus 17 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-~p~~---~~a~~~la~~~ 92 (281)
....+-..+.+|++.+|...+++.++-.|+|-.++..--.+++-+|+-......+++++-. +|+- ...+-.++..+
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL 185 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL 185 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence 3445666788999999999999999999999888887778889999999999999998866 5544 56666778889
Q ss_pred HHhcChHHHHHHHHHHHhhccC
Q 023501 93 LQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 93 ~~~g~~~~A~~~~~kal~~~p~ 114 (281)
...|-|++|.+...++++++|.
T Consensus 186 ~E~g~y~dAEk~A~ralqiN~~ 207 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQINRF 207 (491)
T ss_pred HHhccchhHHHHHHhhccCCCc
Confidence 9999999999999999999765
No 340
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.0039 Score=54.90 Aligned_cols=34 Identities=26% Similarity=0.498 Sum_probs=28.6
Q ss_pred eecCCCcccccchHHhHhccCCCCCCCCCCCcCC
Q 023501 221 VITPSGVTYERAVILDHLDKVGKFDPITREPLRE 254 (281)
Q Consensus 221 v~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~ 254 (281)
.+|||.|.|-+.|+++|.+.-.-.||+||.++.+
T Consensus 602 m~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 602 MLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred cccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 3579999999999999998544359999999864
No 341
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.0063 Score=52.02 Aligned_cols=51 Identities=20% Similarity=0.239 Sum_probs=35.7
Q ss_pred CCcccccCCcccccC----ceecCCCcccccchHHhHhccCCC--CCCCCCCCcCCC
Q 023501 205 PDYLCCKITLDIFRD----PVITPSGVTYERAVILDHLDKVGK--FDPITREPLRES 255 (281)
Q Consensus 205 p~~~~c~i~~~~~~~----pv~~~~g~~~~~~~i~~~~~~~~~--~cP~~~~~~~~~ 255 (281)
|-.-.|.||.+.+-. .-+..|||+|--.|+.+|+...+. .||+|+-.+...
T Consensus 2 pi~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r 58 (465)
T KOG0827|consen 2 PIMAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQER 58 (465)
T ss_pred CccceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccce
Confidence 445579999443322 113459999999999999987654 699999555443
No 342
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.0032 Score=51.13 Aligned_cols=63 Identities=11% Similarity=0.086 Sum_probs=46.2
Q ss_pred cCCCCCCCCcccccCCcccccCce----------ecCCCcccccchHHhHhcc-CCCCCCCCCCCcCCCCCccc
Q 023501 198 DDTPAEVPDYLCCKITLDIFRDPV----------ITPSGVTYERAVILDHLDK-VGKFDPITREPLRESQLVPN 260 (281)
Q Consensus 198 ~~~~~~~p~~~~c~i~~~~~~~pv----------~~~~g~~~~~~~i~~~~~~-~~~~cP~~~~~~~~~~~~~n 260 (281)
++.|..--++-.|.+|+.-+..-| .+.|+|+|-..||.-|.-- ...+||-|++.+....+..|
T Consensus 215 ~glPtkhl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsn 288 (328)
T KOG1734|consen 215 SGLPTKHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSN 288 (328)
T ss_pred CCCCCCCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccC
Confidence 444555556778999987776544 4689999999999999653 33479999988775555544
No 343
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.65 E-value=0.078 Score=36.79 Aligned_cols=35 Identities=20% Similarity=0.281 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501 83 KGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP 117 (281)
Q Consensus 83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~ 117 (281)
.+...+|.+....|++++|+..+++++++.....+
T Consensus 42 ~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D 76 (94)
T PF12862_consen 42 YALLNLAELHRRFGHYEEALQALEEAIRLARENGD 76 (94)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCC
Confidence 45566667777777777777777777776555333
No 344
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.0057 Score=51.98 Aligned_cols=50 Identities=26% Similarity=0.340 Sum_probs=38.2
Q ss_pred CCCCCCCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcC
Q 023501 200 TPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLR 253 (281)
Q Consensus 200 ~~~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~ 253 (281)
.+.+.|..-.|-||.+-..+-+..||||+.| |+.-.. +.+ .||+||+.+.
T Consensus 298 ~~~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~-~l~-~CPvCR~rI~ 347 (355)
T KOG1571|consen 298 TFRELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSK-HLP-QCPVCRQRIR 347 (355)
T ss_pred cccccCCCCceEEecCCccceeeecCCcEEE--chHHHh-hCC-CCchhHHHHH
Confidence 3566677888999999999999999999988 544332 233 3999998654
No 345
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.61 E-value=0.035 Score=31.62 Aligned_cols=30 Identities=30% Similarity=0.433 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 023501 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITL 43 (281)
Q Consensus 14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 43 (281)
+..+..+|..+...|+|++|+.++.+++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 567889999999999999999999999886
No 346
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.45 E-value=0.33 Score=35.87 Aligned_cols=68 Identities=12% Similarity=0.092 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHHhc---CHHHHHHHHHHHHh-hcCc-chhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501 48 PIYWTNRALCHLKRN---DWTKVEADCRKAIQ-LDHD-SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGA 115 (281)
Q Consensus 48 ~~~~~~~a~~~~~~~---~~~~A~~~~~~al~-l~p~-~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~ 115 (281)
....+++|.++.... +..+.+..++..++ -.|. .-+..|.+|..++.+++|+.++.+.+..++..|++
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 456677777776555 45667778888886 3343 35678889999999999999999999999887763
No 347
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.45 E-value=0.28 Score=42.58 Aligned_cols=105 Identities=15% Similarity=0.109 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC----CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--c-----
Q 023501 10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCP----NVPIYWTNRALCHLKRNDWTKVEADCRKAIQL--D----- 78 (281)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--~----- 78 (281)
....+..+...+..+.+.|.++.|...+.++...++ ..+.+....+..+...|+-.+|+..++..++. .
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 345566666667777777777777777666666541 14666666666666666666666666665550 0
Q ss_pred ---------------------------CcchhHHHHHHHHHHHh------cChHHHHHHHHHHHhhccC
Q 023501 79 ---------------------------HDSVKGHYLLGQTLLQR------NEYADGIKELEKALNLGRG 114 (281)
Q Consensus 79 ---------------------------p~~~~a~~~la~~~~~~------g~~~~A~~~~~kal~~~p~ 114 (281)
....++++.+|.-...+ +..++++..|.+++.++|.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 290 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS 290 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh
Confidence 01245666666666666 6666667777777666654
No 348
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.36 E-value=0.09 Score=36.48 Aligned_cols=59 Identities=17% Similarity=0.189 Sum_probs=48.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCC---------chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc
Q 023501 22 NYYFSKDRYGAAIDAYTEAITLCPN---------VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80 (281)
Q Consensus 22 ~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~ 80 (281)
....+.|+|.+|++.+.+.++.... ...+..++|.++...|++++|+..+++|+++...
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 3467889999999988888877432 1467788999999999999999999999998754
No 349
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.32 E-value=0.031 Score=49.78 Aligned_cols=80 Identities=15% Similarity=0.010 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh---------CCC---------chHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 023501 16 QLRLDGNYYFSKDRYGAAIDAYTEAITL---------CPN---------VPIYWTNRALCHLKRNDWTKVEADCRKAIQL 77 (281)
Q Consensus 16 ~~~~~g~~~~~~~~~~~A~~~~~~al~~---------~p~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 77 (281)
.+.++|.++|+.+.|.-++.+|.+|++. .|. .-.+.+|.|..|+..|+.-.|.+.+.+++..
T Consensus 285 f~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v 364 (696)
T KOG2471|consen 285 FNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV 364 (696)
T ss_pred eecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH
Confidence 3578999999999999999999999962 111 4578999999999999999999999999999
Q ss_pred cCcchhHHHHHHHHHHHh
Q 023501 78 DHDSVKGHYLLGQTLLQR 95 (281)
Q Consensus 78 ~p~~~~a~~~la~~~~~~ 95 (281)
--.+|..|.++|++.+..
T Consensus 365 fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 365 FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HhcCcHHHHHHHHHHHHH
Confidence 999999999999987654
No 350
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.24 E-value=0.015 Score=34.49 Aligned_cols=43 Identities=26% Similarity=0.306 Sum_probs=20.4
Q ss_pred ccCCccccc--Cceec--CCCcccccchHHhHhccCCCCCCCCCCCc
Q 023501 210 CKITLDIFR--DPVIT--PSGVTYERAVILDHLDKVGKFDPITREPL 252 (281)
Q Consensus 210 c~i~~~~~~--~pv~~--~~g~~~~~~~i~~~~~~~~~~cP~~~~~~ 252 (281)
||+|.+.|. +--+. +||...|+.|..+.+......||-||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 577776662 11123 49999999999999875444699999875
No 351
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=95.24 E-value=0.045 Score=30.90 Aligned_cols=28 Identities=32% Similarity=0.529 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501 84 GHYLLGQTLLQRNEYADGIKELEKALNL 111 (281)
Q Consensus 84 a~~~la~~~~~~g~~~~A~~~~~kal~~ 111 (281)
.|..+|.+-...++|++|+..|.+++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3444455555555555555555555444
No 352
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=95.20 E-value=0.16 Score=37.04 Aligned_cols=51 Identities=16% Similarity=0.283 Sum_probs=41.1
Q ss_pred CCcccccCCcccccCceec-C---CCcccccchHHhHhccCC--CCCCCCCCCcCCC
Q 023501 205 PDYLCCKITLDIFRDPVIT-P---SGVTYERAVILDHLDKVG--KFDPITREPLRES 255 (281)
Q Consensus 205 p~~~~c~i~~~~~~~pv~~-~---~g~~~~~~~i~~~~~~~~--~~cP~~~~~~~~~ 255 (281)
|.-+.|.||.+.-.++-.+ | ||.+.|-.|-..-|.... ..||+|+..|...
T Consensus 78 ~~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 78 PKLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CCceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 3678899999999998754 3 999999999999887532 2599999988653
No 353
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.12 E-value=0.0035 Score=58.22 Aligned_cols=48 Identities=13% Similarity=0.055 Sum_probs=38.0
Q ss_pred CcccccCCcccccCcee---cCCCcccccchHHhHhccCCCCCCCCCCCcCC
Q 023501 206 DYLCCKITLDIFRDPVI---TPSGVTYERAVILDHLDKVGKFDPITREPLRE 254 (281)
Q Consensus 206 ~~~~c~i~~~~~~~pv~---~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~ 254 (281)
..-.||+|..-+.|-.+ .+|+|-||..||..|-+... +||+|+..|..
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aq-TCPiDR~EF~~ 172 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQ-TCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcc-cCchhhhhhhe
Confidence 34568888877776553 35999999999999988777 59999988764
No 354
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.12 E-value=0.4 Score=39.69 Aligned_cols=67 Identities=15% Similarity=-0.041 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHh----cCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 48 PIYWTNRALCHLKR----NDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 48 ~~~~~~~a~~~~~~----~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
-..+.-+|.+|.++ +.+.+|.-.|++.-..-|..+..+.-.+.+.+.+|+|++|...++.++.-+++
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK 239 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 34555566666544 36888888888888877777888899999999999999999999999988665
No 355
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=95.12 E-value=0.018 Score=34.83 Aligned_cols=44 Identities=20% Similarity=0.336 Sum_probs=22.5
Q ss_pred ccccCCcccccCcee-cCCCcc--cccchHHhHhccCC-CCCCCCCCC
Q 023501 208 LCCKITLDIFRDPVI-TPSGVT--YERAVILDHLDKVG-KFDPITREP 251 (281)
Q Consensus 208 ~~c~i~~~~~~~pv~-~~~g~~--~~~~~i~~~~~~~~-~~cP~~~~~ 251 (281)
+.|||+...|.-||- ..|.|. |+-..........+ -.||+|+++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 679999999999996 557776 44433333333222 259999874
No 356
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.11 E-value=0.42 Score=35.32 Aligned_cols=75 Identities=8% Similarity=-0.008 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHH-hCCC-chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHH
Q 023501 14 AEQLRLDGNYYFSKD---RYGAAIDAYTEAIT-LCPN-VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLL 88 (281)
Q Consensus 14 a~~~~~~g~~~~~~~---~~~~A~~~~~~al~-~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (281)
.+..++++..+.... +-++.|..++..+. -.|. .-.+.+.+|..++++++|+.++.+++..++.+|+|..+.-..
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 345667777777655 45678999999886 4454 346777788889999999999999999999999998876543
No 357
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.10 E-value=1.6 Score=39.02 Aligned_cols=93 Identities=13% Similarity=0.102 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCc---------------------------------------------
Q 023501 14 AEQLRLDGNYYFSKDR-YGAAIDAYTEAITLCPNV--------------------------------------------- 47 (281)
Q Consensus 14 a~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~--------------------------------------------- 47 (281)
+..+..-|..++..|. -++|+..+..++...|.|
T Consensus 379 vh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~ 458 (549)
T PF07079_consen 379 VHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITIS 458 (549)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCccccc
Confidence 4455666777777776 556666666666554443
Q ss_pred -hHHHHHH--HHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHH
Q 023501 48 -PIYWTNR--ALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEK 107 (281)
Q Consensus 48 -~~~~~~~--a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~k 107 (281)
..+-+.+ |.-++..|+|.++.-+..=..+++| ++.++..+|.+++...+|++|...+.+
T Consensus 459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 2333333 3345678999999999998999999 899999999999999999999988764
No 358
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.10 E-value=0.47 Score=41.47 Aligned_cols=97 Identities=7% Similarity=-0.007 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHH
Q 023501 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV-PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTL 92 (281)
Q Consensus 14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~ 92 (281)
+-++...++..+-.|+|++|.+.|+..++ +|.. -.-+..+-.--..+|+.+.|.++.+.|-...|.-+-+....-...
T Consensus 120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r 198 (531)
T COG3898 120 PLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEAR 198 (531)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 44566778889999999999999988665 3431 112222222234789999999999999999999999998888999
Q ss_pred HHhcChHHHHHHHHHHHhh
Q 023501 93 LQRNEYADGIKELEKALNL 111 (281)
Q Consensus 93 ~~~g~~~~A~~~~~kal~~ 111 (281)
...|+|+.|++..+.....
T Consensus 199 ~~~gdWd~AlkLvd~~~~~ 217 (531)
T COG3898 199 CAAGDWDGALKLVDAQRAA 217 (531)
T ss_pred HhcCChHHHHHHHHHHHHH
Confidence 9999999999998866543
No 359
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=94.98 E-value=2.1 Score=36.93 Aligned_cols=111 Identities=11% Similarity=-0.118 Sum_probs=83.2
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcC------------CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHH
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKD------------RYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEAD 70 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~------------~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~ 70 (281)
+.+.+..+|.+.+.|..+....-..- -.+.-+..|++|++.+|++..++..+-.+..+..+-+...+-
T Consensus 8 l~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~ 87 (321)
T PF08424_consen 8 LNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKK 87 (321)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 44566778888888876664432221 145678899999999999999999888888888899999999
Q ss_pred HHHHHhhcCcchhHHHHHHHHHHH---hcChHHHHHHHHHHHhhcc
Q 023501 71 CRKAIQLDHDSVKGHYLLGQTLLQ---RNEYADGIKELEKALNLGR 113 (281)
Q Consensus 71 ~~~al~l~p~~~~a~~~la~~~~~---~g~~~~A~~~~~kal~~~p 113 (281)
.++++..+|.++..|..+-..... .-.+......|.+++..-.
T Consensus 88 we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~ 133 (321)
T PF08424_consen 88 WEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALS 133 (321)
T ss_pred HHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence 999999999988777555433322 3357788888888886643
No 360
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=94.94 E-value=0.062 Score=30.35 Aligned_cols=30 Identities=13% Similarity=0.215 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 023501 48 PIYWTNRALCHLKRNDWTKVEADCRKAIQL 77 (281)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 77 (281)
+.+|..+|.+-+..++|++|+.++.+++++
T Consensus 1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 1 ADVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred CcHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 357889999999999999999999999875
No 361
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.81 E-value=0.014 Score=49.62 Aligned_cols=48 Identities=25% Similarity=0.261 Sum_probs=38.5
Q ss_pred CcccccCCcccccCceecCCCcc-cccchHHhHhccCCCCCCCCCCCcCC
Q 023501 206 DYLCCKITLDIFRDPVITPSGVT-YERAVILDHLDKVGKFDPITREPLRE 254 (281)
Q Consensus 206 ~~~~c~i~~~~~~~pv~~~~g~~-~~~~~i~~~~~~~~~~cP~~~~~~~~ 254 (281)
..-.|-||..--+|=+++||.|. .|..|-...--+.. .||+||+++..
T Consensus 289 ~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n-~CPICRqpi~~ 337 (349)
T KOG4265|consen 289 SGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTN-NCPICRQPIEE 337 (349)
T ss_pred CCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhc-CCCccccchHh
Confidence 35679999999999999999986 79999876643333 39999999864
No 362
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.79 E-value=0.12 Score=39.52 Aligned_cols=99 Identities=17% Similarity=0.137 Sum_probs=71.3
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501 2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS 81 (281)
Q Consensus 2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 81 (281)
+|+......|+.++.-.-.|..+..+|+|.+|+..++...+..|..+.+--.+|.|++.+|+.. =..+..++++..+ +
T Consensus 32 lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~-Wr~~A~evle~~~-d 109 (160)
T PF09613_consen 32 LLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS-WRRYADEVLESGA-D 109 (160)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH-HHHHHHHHHhcCC-C
Confidence 3444455678888888999999999999999999999999999999999999999999999843 1234566666664 3
Q ss_pred hhHHHHHHHHHHHhcChHHHHH
Q 023501 82 VKGHYLLGQTLLQRNEYADGIK 103 (281)
Q Consensus 82 ~~a~~~la~~~~~~g~~~~A~~ 103 (281)
+.+.. +...+....+...|..
T Consensus 110 ~~a~~-Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 110 PDARA-LVRALLARADLEPAHE 130 (160)
T ss_pred hHHHH-HHHHHHHhccccchhh
Confidence 33332 3344444444444443
No 363
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=94.76 E-value=0.029 Score=33.78 Aligned_cols=40 Identities=23% Similarity=0.406 Sum_probs=29.2
Q ss_pred ccCCcc--cccCceecCCC-----cccccchHHhHhccCC-CCCCCCC
Q 023501 210 CKITLD--IFRDPVITPSG-----VTYERAVILDHLDKVG-KFDPITR 249 (281)
Q Consensus 210 c~i~~~--~~~~pv~~~~g-----~~~~~~~i~~~~~~~~-~~cP~~~ 249 (281)
|-||.. --.+|.++||. +-+=++||.+|+.... ..||+|+
T Consensus 2 CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 2 CRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred ccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 667765 34458888874 5688899999997553 3599985
No 364
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.61 E-value=2.7 Score=36.96 Aligned_cols=97 Identities=18% Similarity=0.159 Sum_probs=69.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh---CCC-----chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHH
Q 023501 17 LRLDGNYYFSKDRYGAAIDAYTEAITL---CPN-----VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLL 88 (281)
Q Consensus 17 ~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (281)
....-......|+++.|++..+..... .++ .+.++...+.... .-+...|..+..+++++.|+...+-..-
T Consensus 191 ~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdlvPaav~A 269 (531)
T COG3898 191 ARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKLAPDLVPAAVVA 269 (531)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCccchHHHHH
Confidence 333344556777777777777665433 222 1233333333222 2357788888899999999999999999
Q ss_pred HHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 89 GQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 89 a~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
+.+++..|+..++-..++.+.+..|.
T Consensus 270 Aralf~d~~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 270 ARALFRDGNLRKGSKILETAWKAEPH 295 (531)
T ss_pred HHHHHhccchhhhhhHHHHHHhcCCC
Confidence 99999999999999999999999776
No 365
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.54 E-value=0.6 Score=42.79 Aligned_cols=96 Identities=19% Similarity=-0.050 Sum_probs=79.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHH-HHHHHhhcCcchhHHHHH------HHHH
Q 023501 20 DGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEAD-CRKAIQLDHDSVKGHYLL------GQTL 92 (281)
Q Consensus 20 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~-~~~al~l~p~~~~a~~~l------a~~~ 92 (281)
+...+...++...|.-....++..+|.++.++.+++.+....|..-.+... ...+....|.+..+...+ |..+
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 152 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYL 152 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHH
Confidence 456666778888889999999999999999999999988777766555555 455899999988877776 8888
Q ss_pred HHhcChHHHHHHHHHHHhhccCC
Q 023501 93 LQRNEYADGIKELEKALNLGRGA 115 (281)
Q Consensus 93 ~~~g~~~~A~~~~~kal~~~p~~ 115 (281)
..+|+..++....+++..+.|..
T Consensus 153 ~~l~~~~~~~~~l~~~~d~~p~~ 175 (620)
T COG3914 153 KLLGRTAEAELALERAVDLLPKY 175 (620)
T ss_pred HHhccHHHHHHHHHHHHHhhhhh
Confidence 88999999999999999998875
No 366
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=94.45 E-value=2.5 Score=36.53 Aligned_cols=80 Identities=11% Similarity=-0.051 Sum_probs=68.5
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHhcC------------HHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHH
Q 023501 35 DAYTEAITLCPNVPIYWTNRALCHLKRND------------WTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGI 102 (281)
Q Consensus 35 ~~~~~al~~~p~~~~~~~~~a~~~~~~~~------------~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~ 102 (281)
.-|++.+..+|.|..+|..+....-.+-. .+..+..+++|++.+|++...+..+-.......+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45788899999999999988876554432 567788999999999999999999999999999999999
Q ss_pred HHHHHHHhhccC
Q 023501 103 KELEKALNLGRG 114 (281)
Q Consensus 103 ~~~~kal~~~p~ 114 (281)
+-+++++...|+
T Consensus 86 ~~we~~l~~~~~ 97 (321)
T PF08424_consen 86 KKWEELLFKNPG 97 (321)
T ss_pred HHHHHHHHHCCC
Confidence 999999999776
No 367
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.33 E-value=0.02 Score=46.22 Aligned_cols=49 Identities=16% Similarity=0.295 Sum_probs=34.2
Q ss_pred cccCCcccc-cCce-ecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCccc
Q 023501 209 CCKITLDIF-RDPV-ITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPN 260 (281)
Q Consensus 209 ~c~i~~~~~-~~pv-~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n 260 (281)
.|.-|+.-- .+|- +|.|+|.||..|.....- ..||+|+.++....+.+|
T Consensus 5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~---~~C~lCkk~ir~i~l~~s 55 (233)
T KOG4739|consen 5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKASSP---DVCPLCKKSIRIIQLNRS 55 (233)
T ss_pred EeccccccCCCCceeeeechhhhhhhhcccCCc---cccccccceeeeeecccc
Confidence 355554222 4455 689999999999776542 159999999877666666
No 368
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.27 E-value=1.1 Score=36.34 Aligned_cols=72 Identities=11% Similarity=-0.045 Sum_probs=55.3
Q ss_pred chHHHHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHhCCC------chHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 023501 9 GVAKQAEQLRLDGNYYFSKDRY-------GAAIDAYTEAITLCPN------VPIYWTNRALCHLKRNDWTKVEADCRKAI 75 (281)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~~~~-------~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al 75 (281)
.+...|..+..+|..|-..|+- ..|+..|.+|+..... ...+.+.+|..+.++|++++|..++.+++
T Consensus 113 ~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi 192 (214)
T PF09986_consen 113 KPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVI 192 (214)
T ss_pred CHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3456777788888888777774 4577777777665432 35788889999999999999999999999
Q ss_pred hhcCc
Q 023501 76 QLDHD 80 (281)
Q Consensus 76 ~l~p~ 80 (281)
...-.
T Consensus 193 ~~~~~ 197 (214)
T PF09986_consen 193 GSKKA 197 (214)
T ss_pred cCCCC
Confidence 87543
No 369
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.26 E-value=2.9 Score=35.27 Aligned_cols=102 Identities=14% Similarity=-0.006 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHh----CCC----------chHHHHHHHHHHHHhcCHHH---HHHHHH
Q 023501 11 AKQAEQLRLDGNYYFSKD-RYGAAIDAYTEAITL----CPN----------VPIYWTNRALCHLKRNDWTK---VEADCR 72 (281)
Q Consensus 11 ~~~a~~~~~~g~~~~~~~-~~~~A~~~~~~al~~----~p~----------~~~~~~~~a~~~~~~~~~~~---A~~~~~ 72 (281)
..-+..+++.|...+.++ +|++|+.++++|+++ .+. ...++..++.+|+..+.++. |....+
T Consensus 32 ~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~ 111 (278)
T PF08631_consen 32 EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALR 111 (278)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 345778899999999999 999999999999988 222 24678889999998887654 444444
Q ss_pred HHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhc
Q 023501 73 KAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLG 112 (281)
Q Consensus 73 ~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~ 112 (281)
.+-.--|+.+..++..-.++...++.+++.+.+.+.+...
T Consensus 112 ~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 112 LLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 4444457777777666666777888999999999888764
No 370
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.18 E-value=0.6 Score=41.92 Aligned_cols=93 Identities=9% Similarity=-0.007 Sum_probs=65.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc-----------------chhH
Q 023501 22 NYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD-----------------SVKG 84 (281)
Q Consensus 22 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~-----------------~~~a 84 (281)
...+..|+...|-.....++...|.++..-..++.+...+|+|+.|..++.-+=++-.. +-.+
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence 45567788888888888889999999988888899999999999988876554332211 1111
Q ss_pred H-----------------HHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 85 H-----------------YLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 85 ~-----------------~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
+ ...|...-++|-+++|...+.+.+.++|.
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 1 11122234456678888888888888765
No 371
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=94.15 E-value=0.22 Score=27.73 Aligned_cols=30 Identities=23% Similarity=0.242 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHH--HHHHHHhCC
Q 023501 16 QLRLDGNYYFSKDRYGAAIDA--YTEAITLCP 45 (281)
Q Consensus 16 ~~~~~g~~~~~~~~~~~A~~~--~~~al~~~p 45 (281)
.++..|-.++.+|+|++|+.. |.-+..+++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 345556666666666666666 335544444
No 372
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.11 E-value=4.5 Score=37.92 Aligned_cols=103 Identities=15% Similarity=0.123 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------------------chHHHHHHHHHHHHhcCHHHHHHHHH
Q 023501 11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN------------------VPIYWTNRALCHLKRNDWTKVEADCR 72 (281)
Q Consensus 11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------------------~~~~~~~~a~~~~~~~~~~~A~~~~~ 72 (281)
.+-+.+|-+-|..-++.++++.|+...+.|...-.. +..+|+..+...-..|-++.....|+
T Consensus 422 ~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYd 501 (835)
T KOG2047|consen 422 EDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYD 501 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 456778888888888888888888888888765221 23566666666667778888888888
Q ss_pred HHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhcc
Q 023501 73 KAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGR 113 (281)
Q Consensus 73 ~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p 113 (281)
+.|.+.--.|..-.+.|..+.....+++|.+.|++.+.+-+
T Consensus 502 riidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk 542 (835)
T KOG2047|consen 502 RIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFK 542 (835)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC
Confidence 88888888888888888888888888999999999888843
No 373
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.07 E-value=0.018 Score=52.56 Aligned_cols=64 Identities=17% Similarity=0.136 Sum_probs=43.1
Q ss_pred CCCCcccccCCccccc----CceecCCCcccccchHHhHhccCCCCCCCCCCCc--CCCCCcccHHHHHHH
Q 023501 203 EVPDYLCCKITLDIFR----DPVITPSGVTYERAVILDHLDKVGKFDPITREPL--RESQLVPNLAIKEAV 267 (281)
Q Consensus 203 ~~p~~~~c~i~~~~~~----~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~--~~~~~~~n~~l~~~i 267 (281)
++-..+.|+||...|. .||.+-||||.|+.|++......- .||...... +.+++..|++|-+.+
T Consensus 7 ~w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~sc-p~~~De~~~~~~~~e~p~n~alL~~~ 76 (861)
T KOG3161|consen 7 KWVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNASC-PTKRDEDSSLMQLKEEPRNYALLRRE 76 (861)
T ss_pred hhHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhccC-CCCccccchhcChhhcchhHHHHHhh
Confidence 3445678999987776 499999999999999998774322 134443332 344666677665544
No 374
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.04 E-value=3.6 Score=35.54 Aligned_cols=32 Identities=13% Similarity=-0.064 Sum_probs=17.4
Q ss_pred cCHHHHHHHHHHHHhhcCcchhHHHHHHHHHH
Q 023501 62 NDWTKVEADCRKAIQLDHDSVKGHYLLGQTLL 93 (281)
Q Consensus 62 ~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~ 93 (281)
++.++++..|.+|++++|.+.++|+.+|..+.
T Consensus 272 ~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 272 ESSDEILKYYKEATKLDPSWEKAWHSWALFND 303 (352)
T ss_pred ccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence 44455555555555555555555555555433
No 375
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.02 E-value=0.4 Score=40.25 Aligned_cols=64 Identities=14% Similarity=0.028 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501 48 PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111 (281)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~ 111 (281)
..++..++..+...|+++.++..+++.+.++|.+-.+|..+-.+|...|+...|+..|.+.-++
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 5677888899999999999999999999999999999999999999999999999999987664
No 376
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=93.91 E-value=0.48 Score=34.23 Aligned_cols=67 Identities=12% Similarity=-0.037 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------CCCc----hHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 023501 11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL-------CPNV----PIYWTNRALCHLKRNDWTKVEADCRKAIQL 77 (281)
Q Consensus 11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-------~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 77 (281)
--.+-.+..++..+...|+|++++..-..++.. +.+. ..+-+++|.++-.+|..++|+..++.+.++
T Consensus 52 GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 52 GFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 345667788899999999999988877777754 4443 456678999999999999999999998765
No 377
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=93.88 E-value=2.5 Score=40.76 Aligned_cols=96 Identities=11% Similarity=0.077 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH----------HhCCC----------chHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 023501 16 QLRLDGNYYFSKDRYGAAIDAYTEAI----------TLCPN----------VPIYWTNRALCHLKRNDWTKVEADCRKAI 75 (281)
Q Consensus 16 ~~~~~g~~~~~~~~~~~A~~~~~~al----------~~~p~----------~~~~~~~~a~~~~~~~~~~~A~~~~~~al 75 (281)
.+++.+..+-.++|.+.|+++|+++- .-+|. +..+|..-|.-+-..|+.+.|+..|..|-
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 46777778888889999999998752 22333 56788888888888999999999888763
Q ss_pred h---------------------hcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501 76 Q---------------------LDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111 (281)
Q Consensus 76 ~---------------------l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~ 111 (281)
. ....+..|.|.+|..|...|++.+|+..|.+|...
T Consensus 940 D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 940 DYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred hhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 3 12456778999999999999999999888776544
No 378
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=93.81 E-value=0.3 Score=40.93 Aligned_cols=61 Identities=18% Similarity=0.060 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHH
Q 023501 49 IYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKAL 109 (281)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal 109 (281)
.++...+..|...|.+.+|+..++++++++|-+...+..+-.++..+|+--.+++.|++.-
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3445567889999999999999999999999999999999999999999888888877653
No 379
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.76 E-value=2 Score=33.61 Aligned_cols=66 Identities=14% Similarity=-0.006 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc---chhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 49 IYWTNRALCHLKRNDWTKVEADCRKAIQLDHD---SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~---~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
..+..+|.-|.+.|+++.|++.|.++....-. -...++.+-.+.+..|+|......+.++-.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~ 105 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK 105 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 57778999999999999999999998776532 3567788888899999999999999999877433
No 380
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=93.68 E-value=0.026 Score=36.83 Aligned_cols=48 Identities=17% Similarity=0.236 Sum_probs=23.4
Q ss_pred cccccCCccccc-C---cee----cCCCcccccchHHhHhccC--C--------CCCCCCCCCcCC
Q 023501 207 YLCCKITLDIFR-D---PVI----TPSGVTYERAVILDHLDKV--G--------KFDPITREPLRE 254 (281)
Q Consensus 207 ~~~c~i~~~~~~-~---pv~----~~~g~~~~~~~i~~~~~~~--~--------~~cP~~~~~~~~ 254 (281)
...|+||..... + |++ ..|+.+|=..||.+|+... . ..||.|+.+++-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 356999997655 2 543 2589999999999998641 1 149999998763
No 381
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.65 E-value=0.11 Score=26.49 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHhcChHHHHHHH
Q 023501 84 GHYLLGQTLLQRNEYADGIKEL 105 (281)
Q Consensus 84 a~~~la~~~~~~g~~~~A~~~~ 105 (281)
+++.+|.++..+|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 4455566666666666655554
No 382
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=93.64 E-value=0.28 Score=27.34 Aligned_cols=31 Identities=13% Similarity=0.067 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHH--HHHHHhhcCc
Q 023501 50 YWTNRALCHLKRNDWTKVEAD--CRKAIQLDHD 80 (281)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~--~~~al~l~p~ 80 (281)
.+..+|..+...|++++|++. +.-+..+++.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 344555555566666666666 3355555543
No 383
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=93.63 E-value=0.54 Score=33.26 Aligned_cols=36 Identities=14% Similarity=0.249 Sum_probs=28.5
Q ss_pred CCCCCCCcccccCCcccccCce--ecCCCcccccchHH
Q 023501 200 TPAEVPDYLCCKITLDIFRDPV--ITPSGVTYERAVIL 235 (281)
Q Consensus 200 ~~~~~p~~~~c~i~~~~~~~pv--~~~~g~~~~~~~i~ 235 (281)
....+...-.|++|+..+..++ +.||||.|-..|+.
T Consensus 71 ~~v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 71 RSVVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ceEEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 3445566777999998888766 47999999999975
No 384
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=93.62 E-value=1.8 Score=36.60 Aligned_cols=97 Identities=23% Similarity=0.141 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHhc-------CHHHHHHHHHHHHhhcCc
Q 023501 13 QAEQLRLDGNYYFS----KDRYGAAIDAYTEAITLCPNV-PIYWTNRALCHLKRN-------DWTKVEADCRKAIQLDHD 80 (281)
Q Consensus 13 ~a~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~~-------~~~~A~~~~~~al~l~p~ 80 (281)
.+.....+|..+.. ..++.+|..+|.+|....-.. ......++.+|..-. +...|...+.++....
T Consensus 108 ~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-- 185 (292)
T COG0790 108 LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-- 185 (292)
T ss_pred cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--
Confidence 34556667777776 458888888888887765443 344667777776541 2336888888877775
Q ss_pred chhHHHHHHHHHHH----hcChHHHHHHHHHHHhh
Q 023501 81 SVKGHYLLGQTLLQ----RNEYADGIKELEKALNL 111 (281)
Q Consensus 81 ~~~a~~~la~~~~~----~g~~~~A~~~~~kal~~ 111 (281)
++.+.+.+|.+|.. ..++.+|..+|.++-+.
T Consensus 186 ~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~ 220 (292)
T COG0790 186 NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ 220 (292)
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC
Confidence 67788888877755 23778888888888777
No 385
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.60 E-value=2 Score=36.17 Aligned_cols=104 Identities=10% Similarity=-0.071 Sum_probs=76.8
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHH----------------------------------HHHhCCCch
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTE----------------------------------AITLCPNVP 48 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~----------------------------------al~~~p~~~ 48 (281)
+..+....++++++...++..+...|+.+.|...+.. .+..+|+|.
T Consensus 157 ~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~ 236 (304)
T COG3118 157 LKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDV 236 (304)
T ss_pred HHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCH
Confidence 4456666777788888888999999998766555533 123388899
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc--chhHHHHHHHHHHHhcChHHHHHHHH
Q 023501 49 IYWTNRALCHLKRNDWTKVEADCRKAIQLDHD--SVKGHYLLGQTLLQRNEYADGIKELE 106 (281)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--~~~a~~~la~~~~~~g~~~~A~~~~~ 106 (281)
.+-+.+|..+...|+++.|++.+-..++.|-. +..+...+-.++...|.-+.+...++
T Consensus 237 ~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 237 EAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 99999999999999999999999888888754 45566666677777765444444443
No 386
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.57 E-value=0.021 Score=54.46 Aligned_cols=50 Identities=12% Similarity=0.258 Sum_probs=37.2
Q ss_pred CCCcccccCCccccc--C---cee--cCCCcccccchHHhHhccCC-CCCCCCCCCcC
Q 023501 204 VPDYLCCKITLDIFR--D---PVI--TPSGVTYERAVILDHLDKVG-KFDPITREPLR 253 (281)
Q Consensus 204 ~p~~~~c~i~~~~~~--~---pv~--~~~g~~~~~~~i~~~~~~~~-~~cP~~~~~~~ 253 (281)
....-.|+||-.++. | |-- ..|.|.|--+||..|+.+++ ..||+||..++
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 334456999988877 2 442 34779999999999998654 36999997765
No 387
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=93.47 E-value=0.49 Score=39.65 Aligned_cols=62 Identities=15% Similarity=0.029 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHH
Q 023501 33 AIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQ 94 (281)
Q Consensus 33 A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~ 94 (281)
|+.+|.+|+.+.|++...|+.+|..+...|+.=.|+-+|-+++-....++.|.-++...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999997776678888888888777
No 388
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.46 E-value=3 Score=40.23 Aligned_cols=38 Identities=16% Similarity=0.347 Sum_probs=27.9
Q ss_pred CCCCCcccccCCcc-cccCce-ecCCCcccccchHHhHhc
Q 023501 202 AEVPDYLCCKITLD-IFRDPV-ITPSGVTYERAVILDHLD 239 (281)
Q Consensus 202 ~~~p~~~~c~i~~~-~~~~pv-~~~~g~~~~~~~i~~~~~ 239 (281)
+.+.+.=.|.+|.. ++..|- +-||||.|=+.||+++..
T Consensus 812 ~v~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 812 RVLEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred EEecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 33444557899974 444576 589999999999999854
No 389
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=93.44 E-value=0.56 Score=42.18 Aligned_cols=82 Identities=16% Similarity=0.142 Sum_probs=66.6
Q ss_pred hhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC-HHHHHHHHHHHHhhcCcchhH
Q 023501 6 GLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRND-WTKVEADCRKAIQLDHDSVKG 84 (281)
Q Consensus 6 ~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~l~p~~~~a 84 (281)
+...-+.....|......+-+.+.|.+-...|.+++...|+++.+|..-|.=.+..+. .+.|...+.++++.+|++++.
T Consensus 97 at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~L 176 (568)
T KOG2396|consen 97 ATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKL 176 (568)
T ss_pred HHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHH
Confidence 3343444566677777777777779999999999999999999999988877777775 899999999999999999876
Q ss_pred HHH
Q 023501 85 HYL 87 (281)
Q Consensus 85 ~~~ 87 (281)
|.-
T Consensus 177 w~e 179 (568)
T KOG2396|consen 177 WKE 179 (568)
T ss_pred HHH
Confidence 643
No 390
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=93.41 E-value=1.2 Score=44.64 Aligned_cols=104 Identities=19% Similarity=0.157 Sum_probs=85.9
Q ss_pred chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc--
Q 023501 9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL--------CPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD-- 78 (281)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-- 78 (281)
..++.+..+..++..+...+++++|+..-.+|.-+ .|+....|.+++...+..++...|+..+.++.++.
T Consensus 968 ~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~L 1047 (1236)
T KOG1839|consen 968 LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLL 1047 (1236)
T ss_pred cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcc
Confidence 45677888999999999999999999998887654 24567889999999999999999999999988764
Q ss_pred ------CcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhc
Q 023501 79 ------HDSVKGHYLLGQTLLQRNEYADGIKELEKALNLG 112 (281)
Q Consensus 79 ------p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~ 112 (281)
|.-.-...+++.++..+++++.|+...+.|++..
T Consensus 1048 s~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1048 SSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred ccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4444455778888888899999999999999864
No 391
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.39 E-value=0.83 Score=38.41 Aligned_cols=68 Identities=13% Similarity=-0.004 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 023501 10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQL 77 (281)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 77 (281)
......++..++..+...++++.++..+++.+..+|.+-..|..+-..|++.|+...|+..|++.-++
T Consensus 149 ~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 149 EELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 34556778889999999999999999999999999999999999999999999999999999887654
No 392
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=93.34 E-value=0.093 Score=44.49 Aligned_cols=62 Identities=16% Similarity=0.220 Sum_probs=48.3
Q ss_pred CCCcccccCCcccccCcee-cCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHHHH
Q 023501 204 VPDYLCCKITLDIFRDPVI-TPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMD 272 (281)
Q Consensus 204 ~p~~~~c~i~~~~~~~pv~-~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~~~ 272 (281)
..+-+.||+|.+.+..|+. =+.||.-|.+|=.+. .. .||.|+.++.. +.+..+..+|+..+.
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~---~~-~CP~Cr~~~g~---~R~~amEkV~e~~~v 107 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKV---SN-KCPTCRLPIGN---IRCRAMEKVAEAVLV 107 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhhhh---cc-cCCcccccccc---HHHHHHHHHHHhcee
Confidence 3456789999999999996 568999999995432 22 59999999883 477888888877643
No 393
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.23 E-value=1.8 Score=35.85 Aligned_cols=92 Identities=12% Similarity=0.022 Sum_probs=75.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChH-H
Q 023501 23 YYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRN-DWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYA-D 100 (281)
Q Consensus 23 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~-~ 100 (281)
+..+...-..|+..-..+|.++|.+..+|..|-.++..++ +..+-++++.+.++-+|.|...|..+-.+...+|++. .
T Consensus 52 I~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~r 131 (318)
T KOG0530|consen 52 IIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFR 131 (318)
T ss_pred HHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccc
Confidence 3345556678999999999999999999998888887665 6778888999999999999999999988888888887 6
Q ss_pred HHHHHHHHHhhccC
Q 023501 101 GIKELEKALNLGRG 114 (281)
Q Consensus 101 A~~~~~kal~~~p~ 114 (281)
-+.....++..+.+
T Consensus 132 ELef~~~~l~~DaK 145 (318)
T KOG0530|consen 132 ELEFTKLMLDDDAK 145 (318)
T ss_pred hHHHHHHHHhcccc
Confidence 67777788877444
No 394
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.22 E-value=6.8 Score=36.76 Aligned_cols=101 Identities=12% Similarity=0.006 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC--cchhHHH---HH
Q 023501 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDH--DSVKGHY---LL 88 (281)
Q Consensus 14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p--~~~~a~~---~l 88 (281)
...|...++..-..|=++.-...|++.|++.--.|..-.|.|..+-...-+++|.+.|++.|.+-+ .-.+.|. ..
T Consensus 477 lkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtk 556 (835)
T KOG2047|consen 477 LKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTK 556 (835)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHH
Confidence 344555566666677888888899999999888888888999888888889999999999998874 3233332 23
Q ss_pred HHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 89 GQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 89 a~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
...-+.-.+.+.|...|++|++.+|.
T Consensus 557 fi~rygg~klEraRdLFEqaL~~Cpp 582 (835)
T KOG2047|consen 557 FIKRYGGTKLERARDLFEQALDGCPP 582 (835)
T ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCH
Confidence 33333334689999999999999883
No 395
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=93.21 E-value=0.14 Score=43.14 Aligned_cols=78 Identities=15% Similarity=0.173 Sum_probs=55.1
Q ss_pred chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHH-HHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHH
Q 023501 9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTN-RALCHLKRNDWTKVEADCRKAIQLDHDSVKGHY 86 (281)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~ 86 (281)
.-+..+..|...+.-..+.|-|.+--..|.+++...|.++.+|.. -+.=+...++++.+...+.++++++|+++..|+
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 334556666666666677777777777888888888887777765 333456667788888888888888877776554
No 396
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.11 E-value=1 Score=42.01 Aligned_cols=95 Identities=20% Similarity=0.166 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhc-----CCHHHHHHHHHHHHHh-----CCCchHHHHHHHHHHHHhc-----CHHHHHHHHHHHHhhcC
Q 023501 15 EQLRLDGNYYFSK-----DRYGAAIDAYTEAITL-----CPNVPIYWTNRALCHLKRN-----DWTKVEADCRKAIQLDH 79 (281)
Q Consensus 15 ~~~~~~g~~~~~~-----~~~~~A~~~~~~al~~-----~p~~~~~~~~~a~~~~~~~-----~~~~A~~~~~~al~l~p 79 (281)
.....+|..++.- +|.+.|+.+|..+... .-.++.+.+.+|.+|.+.. ++..|+..+.+|-.++
T Consensus 245 ~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g- 323 (552)
T KOG1550|consen 245 EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG- 323 (552)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-
Confidence 3344445554432 4666777777666551 0114455666666666543 4566666666666663
Q ss_pred cchhHHHHHHHHHHHhc---ChHHHHHHHHHHHhh
Q 023501 80 DSVKGHYLLGQTLLQRN---EYADGIKELEKALNL 111 (281)
Q Consensus 80 ~~~~a~~~la~~~~~~g---~~~~A~~~~~kal~~ 111 (281)
++.+.+.+|.++..-. ++..|.++|..|...
T Consensus 324 -~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~ 357 (552)
T KOG1550|consen 324 -NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA 357 (552)
T ss_pred -CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc
Confidence 4566666666666544 455666666666544
No 397
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=92.91 E-value=0.082 Score=42.28 Aligned_cols=59 Identities=17% Similarity=0.126 Sum_probs=45.6
Q ss_pred cccccCCcccccCcee-cCCCcccccchHHhHhccCC-CCCCC--CCCCcCCCCCcccHHHHH
Q 023501 207 YLCCKITLDIFRDPVI-TPSGVTYERAVILDHLDKVG-KFDPI--TREPLRESQLVPNLAIKE 265 (281)
Q Consensus 207 ~~~c~i~~~~~~~pv~-~~~g~~~~~~~i~~~~~~~~-~~cP~--~~~~~~~~~~~~n~~l~~ 265 (281)
...|||+...-..|++ +.|+|.|+++-|...+.... ..||. |.+.+..+.++.+..|..
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~IlE~ 251 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHILEK 251 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHHHH
Confidence 4679999999999997 67999999999999997433 35885 556666667777765543
No 398
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=92.84 E-value=1.6 Score=28.81 Aligned_cols=30 Identities=20% Similarity=0.199 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023501 13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAIT 42 (281)
Q Consensus 13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~ 42 (281)
.|..+...|..+=+.|+|++|+.+|+++++
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 455666677777777777777777766655
No 399
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.74 E-value=0.19 Score=25.56 Aligned_cols=23 Identities=22% Similarity=0.001 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHH
Q 023501 50 YWTNRALCHLKRNDWTKVEADCR 72 (281)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~ 72 (281)
+..++|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 44556666666666666655543
No 400
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=92.73 E-value=0.6 Score=35.03 Aligned_cols=52 Identities=17% Similarity=0.060 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChH
Q 023501 48 PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYA 99 (281)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~ 99 (281)
......+|...+..|+|.-|.+.++.++..+|++..+...++.++.++|.-.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 3444455666667777777777777777777777777777777777777543
No 401
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.68 E-value=0.54 Score=37.33 Aligned_cols=78 Identities=13% Similarity=0.009 Sum_probs=59.1
Q ss_pred HhcCCHHHHHHHHHHHHHhCC--CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc----chhHHHHHHHHHHHhcCh
Q 023501 25 FSKDRYGAAIDAYTEAITLCP--NVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD----SVKGHYLLGQTLLQRNEY 98 (281)
Q Consensus 25 ~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~----~~~a~~~la~~~~~~g~~ 98 (281)
+.+-.=++|...|-++- ..| +++...+.+|..|. ..+.++|+..+.+++++.+. +++.+..|+.++..+|++
T Consensus 117 Wsr~~d~~A~~~fL~~E-~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGDQEALRRFLQLE-GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCcHHHHHHHHHHc-CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 44434467777776643 333 37888888887665 67899999999999998743 588999999999999999
Q ss_pred HHHHHH
Q 023501 99 ADGIKE 104 (281)
Q Consensus 99 ~~A~~~ 104 (281)
+.|.-+
T Consensus 195 e~AYiw 200 (203)
T PF11207_consen 195 EQAYIW 200 (203)
T ss_pred hhhhhh
Confidence 988643
No 402
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.59 E-value=0.3 Score=36.73 Aligned_cols=63 Identities=21% Similarity=0.157 Sum_probs=52.7
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCH
Q 023501 2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDW 64 (281)
Q Consensus 2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~ 64 (281)
+|+......|+.++.-.-.|..+..+|+|.+|+..+....+..+..+..--.++.|++.+||.
T Consensus 32 lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 32 MLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 344444556777888888999999999999999999998888888888888889999999874
No 403
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=92.48 E-value=1.4 Score=35.53 Aligned_cols=63 Identities=14% Similarity=0.029 Sum_probs=53.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchh
Q 023501 21 GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVK 83 (281)
Q Consensus 21 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 83 (281)
...+++.+...+||.....-++..|.+......+-..+.-.|+|++|...++-+-+++|++..
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 456778888899999999989999999888888888888899999999999999999988754
No 404
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=92.31 E-value=0.27 Score=41.59 Aligned_cols=80 Identities=11% Similarity=0.101 Sum_probs=68.8
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHH-HHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501 37 YTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYL-LGQTLLQRNEYADGIKELEKALNLGRGA 115 (281)
Q Consensus 37 ~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~-la~~~~~~g~~~~A~~~~~kal~~~p~~ 115 (281)
|.++-...|+|+.+|.-.+.-..+.|.|.+.-..|.++++..|.+++.|.. -+.-+...++++.+...|.+++.++|.+
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 444555578899999999888888889999999999999999999999987 5666788899999999999999998774
Q ss_pred C
Q 023501 116 K 116 (281)
Q Consensus 116 ~ 116 (281)
+
T Consensus 176 p 176 (435)
T COG5191 176 P 176 (435)
T ss_pred c
Confidence 3
No 405
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.23 E-value=7.9 Score=37.61 Aligned_cols=94 Identities=16% Similarity=0.051 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc-----hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc----Ccc--
Q 023501 13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV-----PIYWTNRALCHLKRNDWTKVEADCRKAIQLD----HDS-- 81 (281)
Q Consensus 13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~----p~~-- 81 (281)
.++.....|.+....|++++|+++.+.++..-|.+ ..+++..|.+..-.|++++|......+.++. ..+
T Consensus 457 ~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~ 536 (894)
T COG2909 457 LAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLA 536 (894)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHH
Confidence 34555667889999999999999999999998764 5789999999999999999999999998874 322
Q ss_pred hhHHHHHHHHHHHhcC--hHHHHHHHH
Q 023501 82 VKGHYLLGQTLLQRNE--YADGIKELE 106 (281)
Q Consensus 82 ~~a~~~la~~~~~~g~--~~~A~~~~~ 106 (281)
.-+.+..+.++..+|+ +.+....+.
T Consensus 537 ~~~~~~~s~il~~qGq~~~a~~~~~~~ 563 (894)
T COG2909 537 LWSLLQQSEILEAQGQVARAEQEKAFN 563 (894)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344556888888893 333344443
No 406
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.18 E-value=5.8 Score=32.71 Aligned_cols=98 Identities=11% Similarity=0.086 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc------h
Q 023501 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITL-----CPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS------V 82 (281)
Q Consensus 14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~------~ 82 (281)
|..+-..|..+-....+.++..+|++|..+ .|+-+..-..+|.=..+.-+.++|+..|++++.+-... .
T Consensus 71 AKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~ 150 (308)
T KOG1585|consen 71 AKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAF 150 (308)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence 344444455555666777788888887765 34444444444444456667888888888877654322 3
Q ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501 83 KGHYLLGQTLLQRNEYADGIKELEKALNL 111 (281)
Q Consensus 83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~ 111 (281)
+.+-..+.++..+.+|++|-..+.+-...
T Consensus 151 el~gk~sr~lVrl~kf~Eaa~a~lKe~~~ 179 (308)
T KOG1585|consen 151 ELYGKCSRVLVRLEKFTEAATAFLKEGVA 179 (308)
T ss_pred HHHHHhhhHhhhhHHhhHHHHHHHHhhhH
Confidence 34455567777788888887777665443
No 407
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.12 E-value=8.7 Score=34.57 Aligned_cols=145 Identities=12% Similarity=0.060 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch-----HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHH
Q 023501 15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVP-----IYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLG 89 (281)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la 89 (281)
-.+-..|..+.+++++.+|...|.+..+...+.+ +++.+|-.--+-+++.+.-.......-+..|..+......|
T Consensus 7 ~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~ 86 (549)
T PF07079_consen 7 YLLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKA 86 (549)
T ss_pred HHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 3455679999999999999999999877655543 45555555445567777777776666677788888899999
Q ss_pred HHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 90 QTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALE 160 (281)
Q Consensus 90 ~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (281)
...++.+.|++|++.+..-.....+... .-+...+...+...--..-.+......|++.+....+++.+.
T Consensus 87 L~~Y~~k~~~kal~~ls~w~~~~~~~~~-~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~ 156 (549)
T PF07079_consen 87 LVAYKQKEYRKALQALSVWKEQIKGTES-PWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIE 156 (549)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhhccccc-chhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 9999999999999888655444222111 111222333333322222333444455555555544444433
No 408
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.08 E-value=0.041 Score=35.68 Aligned_cols=46 Identities=20% Similarity=0.217 Sum_probs=31.1
Q ss_pred ccccCCcccccC-ceec-CCCcccccchHHhHhccC--CCCCCCCCCCcC
Q 023501 208 LCCKITLDIFRD-PVIT-PSGVTYERAVILDHLDKV--GKFDPITREPLR 253 (281)
Q Consensus 208 ~~c~i~~~~~~~-pv~~-~~g~~~~~~~i~~~~~~~--~~~cP~~~~~~~ 253 (281)
=.||-|.-.=-| |++. -|-|.|=.-||.+|+... +..||+||+.+.
T Consensus 32 g~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 32 GCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 344554433333 6654 488999999999999643 335999998765
No 409
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=92.00 E-value=1.8 Score=34.93 Aligned_cols=76 Identities=16% Similarity=0.177 Sum_probs=61.6
Q ss_pred HHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHH
Q 023501 57 CHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLL 136 (281)
Q Consensus 57 ~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~ 136 (281)
-+++-+...+|+...+.-++.+|.+......+-+.|.-.|+|++|...++-+-.+.|+... ...++..+-+++...
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~----~a~lyr~lir~ea~R 85 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV----GASLYRHLIRCEAAR 85 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch----HHHHHHHHHHHHHHH
Confidence 4567788999999999999999999999999999999999999999999999999776333 234445555554433
No 410
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=91.81 E-value=2.7 Score=37.33 Aligned_cols=60 Identities=18% Similarity=0.223 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhc---------CcchhHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501 51 WTNRALCHLKRNDWTKVEADCRKAIQLD---------HDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111 (281)
Q Consensus 51 ~~~~a~~~~~~~~~~~A~~~~~~al~l~---------p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~ 111 (281)
...+.+++.-+|||..|++.++-. .++ +.+...+|..|-+|+.+++|.+|+..|...+-.
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888999999999887543 222 457789999999999999999999999988755
No 411
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.77 E-value=6.8 Score=32.64 Aligned_cols=86 Identities=13% Similarity=0.061 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHH-HHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHH
Q 023501 29 RYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWT-KVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEK 107 (281)
Q Consensus 29 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~-~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~k 107 (281)
+..+-+++++..++.+|.|..+|..|-.+...+|++. .-++.+..++..|..|..+|-.+--+....+.|+.-+.....
T Consensus 93 dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~ 172 (318)
T KOG0530|consen 93 DLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADE 172 (318)
T ss_pred HHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 4556677777777778888888877777777777776 667777777887777777777777777777777777777777
Q ss_pred HHhhccC
Q 023501 108 ALNLGRG 114 (281)
Q Consensus 108 al~~~p~ 114 (281)
.++.+--
T Consensus 173 Lle~Di~ 179 (318)
T KOG0530|consen 173 LLEEDIR 179 (318)
T ss_pred HHHHhhh
Confidence 7776543
No 412
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=91.74 E-value=0.063 Score=49.99 Aligned_cols=65 Identities=11% Similarity=0.221 Sum_probs=50.9
Q ss_pred cccccCCcccccCceecCCCcccccchHHhHhccC--CCCCCCCCCCcCCCCCcccHHHHHHHHHHH
Q 023501 207 YLCCKITLDIFRDPVITPSGVTYERAVILDHLDKV--GKFDPITREPLRESQLVPNLAIKEAVRAYM 271 (281)
Q Consensus 207 ~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~--~~~cP~~~~~~~~~~~~~n~~l~~~i~~~~ 271 (281)
.+.||||....++|+.+.|-|.||+.|+-..+... ...||+|+..+.......-..-.+++++++
T Consensus 21 ~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~Es~r~sq~vqe~l 87 (684)
T KOG4362|consen 21 ILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRESPRFSQLSKESL 87 (684)
T ss_pred hccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccccchHHHHHHHhc
Confidence 45699999999999999999999999998876543 335999997776655555655677777663
No 413
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.73 E-value=0.55 Score=42.15 Aligned_cols=55 Identities=9% Similarity=0.080 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHH
Q 023501 18 RLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCR 72 (281)
Q Consensus 18 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~ 72 (281)
...+.+.-..|+|+.|......+-..-..-..+...+-.-..++|.|+.|.....
T Consensus 327 ~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~ 381 (831)
T PRK15180 327 QLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAE 381 (831)
T ss_pred HHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHH
Confidence 3445555666777777666554433322222222233333344444444444333
No 414
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.70 E-value=0.057 Score=44.62 Aligned_cols=43 Identities=23% Similarity=0.159 Sum_probs=31.3
Q ss_pred CCcccccCCcccccCceecCCCcc-cccchHHhHhccCCCCCCCCCCCc
Q 023501 205 PDYLCCKITLDIFRDPVITPSGVT-YERAVILDHLDKVGKFDPITREPL 252 (281)
Q Consensus 205 p~~~~c~i~~~~~~~pv~~~~g~~-~~~~~i~~~~~~~~~~cP~~~~~~ 252 (281)
..+.+|.||.+.-.|=|.++|||. -|-.|=.+ -..||+||+.+
T Consensus 298 ~~~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr-----m~eCPICRqyi 341 (350)
T KOG4275|consen 298 ATRRLCAICMDAPRDCVFLECGHMVTCTKCGKR-----MNECPICRQYI 341 (350)
T ss_pred hHHHHHHHHhcCCcceEEeecCcEEeehhhccc-----cccCchHHHHH
Confidence 347889999999999999999996 34444111 11599998654
No 415
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.67 E-value=1.7 Score=38.19 Aligned_cols=96 Identities=21% Similarity=0.213 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHhcCHHHHHHHHHHHHhh----c----Ccch
Q 023501 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN---VPIYWTNRALCHLKRNDWTKVEADCRKAIQL----D----HDSV 82 (281)
Q Consensus 14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l----~----p~~~ 82 (281)
-..+.++|.-|...|+++.|++.|.++-+...+ -...+.|.-.+-..+|+|.....+..+|... . .-.+
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 456788999999999999999999997665443 2456666666777899999988888888665 1 1235
Q ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHH
Q 023501 83 KGHYLLGQTLLQRNEYADGIKELEKAL 109 (281)
Q Consensus 83 ~a~~~la~~~~~~g~~~~A~~~~~kal 109 (281)
+.....|.+.+.+++|..|..+|..+.
T Consensus 230 kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 230 KLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 667778888999999999999887553
No 416
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=91.40 E-value=4.3 Score=40.89 Aligned_cols=101 Identities=19% Similarity=0.170 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHH------HHHHH-HHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc------
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAID------AYTEA-ITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD------ 78 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~------~~~~a-l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~------ 78 (281)
..+....+.|......+.+.+|.+ .++.. -.+.|..+..|..++..+..+|++++|+....+|.-+.
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence 567788889999999999998888 55533 23467889999999999999999999999999987654
Q ss_pred --CcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhc
Q 023501 79 --HDSVKGHYLLGQTLLQRNEYADGIKELEKALNLG 112 (281)
Q Consensus 79 --p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~ 112 (281)
|+....+..++...+..++...|+..+.+++.+.
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~ 1045 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLK 1045 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhh
Confidence 5667788888988888889999999988888764
No 417
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=91.40 E-value=9.6 Score=33.61 Aligned_cols=110 Identities=14% Similarity=0.031 Sum_probs=79.6
Q ss_pred chHHHHHHHHHHHHhcCHHHHHHHHHHHHhh----cCcchhHHHHHHHHHHH---hcChHHHHHHHHHHHhhccCCCCCc
Q 023501 47 VPIYWTNRALCHLKRNDWTKVEADCRKAIQL----DHDSVKGHYLLGQTLLQ---RNEYADGIKELEKALNLGRGAKPKG 119 (281)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l----~p~~~~a~~~la~~~~~---~g~~~~A~~~~~kal~~~p~~~~~~ 119 (281)
++.+..++-.+|....+|+.-+...+..-.+ -+..+...+.+|.++.. .|+.++|+..+..++......
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~---- 215 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENP---- 215 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCC----
Confidence 4566677777899999999999988887666 45677788899999999 999999999999976664332
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023501 120 YIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEK 162 (281)
Q Consensus 120 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (281)
..++.-.++++-+.++...........+.+.....+..+.+
T Consensus 216 --~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~ 256 (374)
T PF13281_consen 216 --DPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE 256 (374)
T ss_pred --ChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC
Confidence 23566677777776666543333344666666666666554
No 418
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=91.18 E-value=1.3 Score=32.16 Aligned_cols=28 Identities=21% Similarity=0.220 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 023501 16 QLRLDGNYYFSKDRYGAAIDAYTEAITL 43 (281)
Q Consensus 16 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 43 (281)
.+..+|+..++.+++-.||-+|++|+.+
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~ 30 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSL 30 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 5678899999999999999999999875
No 419
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=91.13 E-value=12 Score=34.38 Aligned_cols=73 Identities=11% Similarity=0.131 Sum_probs=61.1
Q ss_pred hhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 023501 4 EAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQL 77 (281)
Q Consensus 4 ~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 77 (281)
++.++.+|.+...|..+-..+-.+ .+++....|++.+...|..+.+|......-++.++|+.....+.+++.-
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 345667788888888887766665 8999999999999999999999988888888889999999999888754
No 420
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=90.87 E-value=0.051 Score=53.67 Aligned_cols=43 Identities=26% Similarity=0.253 Sum_probs=38.4
Q ss_pred cccccCCccccc-CceecCCCcccccchHHhHhccCCCCCCCCCC
Q 023501 207 YLCCKITLDIFR-DPVITPSGVTYERAVILDHLDKVGKFDPITRE 250 (281)
Q Consensus 207 ~~~c~i~~~~~~-~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~ 250 (281)
.+.|++|+++++ .--+..|||.+|..|++.|+..... ||.|..
T Consensus 1153 ~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~-~~~~ks 1196 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSR-CPICKS 1196 (1394)
T ss_pred ccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhcc-Ccchhh
Confidence 578999999999 5668899999999999999998884 999973
No 421
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.78 E-value=0.22 Score=43.29 Aligned_cols=35 Identities=11% Similarity=0.210 Sum_probs=28.3
Q ss_pred CcccccCCcccccCce---ecCCCcccccchHHhHhcc
Q 023501 206 DYLCCKITLDIFRDPV---ITPSGVTYERAVILDHLDK 240 (281)
Q Consensus 206 ~~~~c~i~~~~~~~pv---~~~~g~~~~~~~i~~~~~~ 240 (281)
..|.|.||++-...-+ .+||+|.||++|+..+++.
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~ 220 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTI 220 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHH
Confidence 3578999997776633 5899999999999998753
No 422
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=90.58 E-value=0.8 Score=30.20 Aligned_cols=17 Identities=18% Similarity=0.225 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHhhccC
Q 023501 98 YADGIKELEKALNLGRG 114 (281)
Q Consensus 98 ~~~A~~~~~kal~~~p~ 114 (281)
|.+|++.+.+++...|+
T Consensus 29 Y~~aIe~L~q~~~~~pD 45 (75)
T cd02682 29 YKKAIEVLSQIVKNYPD 45 (75)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 34555556666666555
No 423
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=90.56 E-value=0.71 Score=38.63 Aligned_cols=45 Identities=20% Similarity=0.106 Sum_probs=40.3
Q ss_pred HHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501 67 VEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111 (281)
Q Consensus 67 A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~ 111 (281)
|..+|.+|+.+.|.++..|..+|.+....|+.=.|+-+|-+++..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~ 45 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV 45 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhc
Confidence 678999999999999999999999999999999999999999855
No 424
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.47 E-value=3 Score=33.22 Aligned_cols=54 Identities=15% Similarity=0.130 Sum_probs=35.7
Q ss_pred HhcCHHHHHHHHHHHHhhc-CcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501 60 KRNDWTKVEADCRKAIQLD-HDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGA 115 (281)
Q Consensus 60 ~~~~~~~A~~~~~~al~l~-p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~ 115 (281)
+.|+ +.|..-+-++-... -+.++..+.+|..|. ..+.++|+..+.+++++.+..
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~ 173 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPD 173 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCC
Confidence 4454 66666654432222 246777788887665 667889999999999886553
No 425
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=90.45 E-value=1.2 Score=33.32 Aligned_cols=50 Identities=10% Similarity=-0.025 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Q 023501 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRND 63 (281)
Q Consensus 14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~ 63 (281)
++.+...+...+..|+|.-|....+.++..+|++..+...++.++.++|.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 35566777888888888888888888888888888888888887776663
No 426
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=90.30 E-value=10 Score=33.44 Aligned_cols=73 Identities=11% Similarity=0.017 Sum_probs=46.6
Q ss_pred HhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--------------c------------Cc---chhHHHHHHHHH
Q 023501 42 TLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQL--------------D------------HD---SVKGHYLLGQTL 92 (281)
Q Consensus 42 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--------------~------------p~---~~~a~~~la~~~ 92 (281)
..+|-....+..++.++...|+...|.+.+++|+-. + +. ...+.++....+
T Consensus 34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L 113 (360)
T PF04910_consen 34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSL 113 (360)
T ss_pred HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHH
Confidence 456666667777777777777766666666666421 1 11 234556666677
Q ss_pred HHhcChHHHHHHHHHHHhhccC
Q 023501 93 LQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 93 ~~~g~~~~A~~~~~kal~~~p~ 114 (281)
.+.|-+..|.+..+-.+.++|.
T Consensus 114 ~~RG~~rTAlE~~KlLlsLdp~ 135 (360)
T PF04910_consen 114 GRRGCWRTALEWCKLLLSLDPD 135 (360)
T ss_pred HhcCcHHHHHHHHHHHHhcCCC
Confidence 7777777777777777777766
No 427
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.30 E-value=4 Score=38.15 Aligned_cols=93 Identities=17% Similarity=0.089 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhcC-----CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc---CHHHHHHHHHHHHhhcCcchhHHHH
Q 023501 16 QLRLDGNYYFSKD-----RYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRN---DWTKVEADCRKAIQLDHDSVKGHYL 87 (281)
Q Consensus 16 ~~~~~g~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~l~p~~~~a~~~ 87 (281)
+...+|..|++.. ++..|+.+|.++.+... +...+.+|.++.... ++..|.+++..|.+. .+..+.++
T Consensus 290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~--~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~ 365 (552)
T KOG1550|consen 290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN--PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYR 365 (552)
T ss_pred cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC--chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHH
Confidence 3456778887743 78999999999988754 556666788887655 678999999999877 46889999
Q ss_pred HHHHHHHh----cChHHHHHHHHHHHhhc
Q 023501 88 LGQTLLQR----NEYADGIKELEKALNLG 112 (281)
Q Consensus 88 la~~~~~~----g~~~~A~~~~~kal~~~ 112 (281)
+|.+|..= .+...|..++.++-+..
T Consensus 366 la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 366 LALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 99988752 47899999999999884
No 428
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.27 E-value=12 Score=34.11 Aligned_cols=97 Identities=22% Similarity=0.229 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHhcCHHHHHHHHHHHHh-hcCcc------
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN---VPIYWTNRALCHLKRNDWTKVEADCRKAIQ-LDHDS------ 81 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-l~p~~------ 81 (281)
..+..+..+|..+..-+-|+.|...|..|...... .+.+..|+|..|...|+-+. +.++++ +.|.|
T Consensus 365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed----~y~~ld~i~p~nt~s~ss 440 (629)
T KOG2300|consen 365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAED----LYKALDLIGPLNTNSLSS 440 (629)
T ss_pred hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHH----HHHHHHhcCCCCCCcchH
Confidence 34778889999999999999999999999887654 35677788999998877553 333332 34432
Q ss_pred ----hhHHHHHHHHHHHhcChHHHHHHHHHHHhhc
Q 023501 82 ----VKGHYLLGQTLLQRNEYADGIKELEKALNLG 112 (281)
Q Consensus 82 ----~~a~~~la~~~~~~g~~~~A~~~~~kal~~~ 112 (281)
..++|..|...+.++++.+|...+.+.++..
T Consensus 441 q~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 441 QRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 3467778888889999999999999999985
No 429
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=90.06 E-value=5.6 Score=35.42 Aligned_cols=96 Identities=9% Similarity=-0.076 Sum_probs=61.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCC---------chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHH
Q 023501 19 LDGNYYFSKDRYGAAIDAYTEAITLCPN---------VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLG 89 (281)
Q Consensus 19 ~~g~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la 89 (281)
-+...+.-.|||..|++.... |+++.. ...+++..|-||+++++|.+|++.+...+----..-..+....
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~ 205 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRS 205 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 344566788999999999765 333322 4678899999999999999999999988643211111111111
Q ss_pred HHHHH-hcChHHHHHHHHHHHhhccCC
Q 023501 90 QTLLQ-RNEYADGIKELEKALNLGRGA 115 (281)
Q Consensus 90 ~~~~~-~g~~~~A~~~~~kal~~~p~~ 115 (281)
.-+-. .+..++....+--++.+.|..
T Consensus 206 ~q~d~i~K~~eqMyaLlAic~~l~p~~ 232 (404)
T PF10255_consen 206 YQYDQINKKNEQMYALLAICLSLCPQR 232 (404)
T ss_pred chhhHHHhHHHHHHHHHHHHHHhCCCC
Confidence 11111 234566666666677777753
No 430
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=90.05 E-value=0.41 Score=33.70 Aligned_cols=71 Identities=23% Similarity=0.360 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhcCcCCCC--C-CCCcccccCCcccccCceecC--CC----cccccchHHhHhccCCCCCCCCCCCcCCC
Q 023501 185 MEALRQVFRKAAEDDTPA--E-VPDYLCCKITLDIFRDPVITP--SG----VTYERAVILDHLDKVGKFDPITREPLRES 255 (281)
Q Consensus 185 ~~~l~~~~~~~~~~~~~~--~-~p~~~~c~i~~~~~~~pv~~~--~g----~~~~~~~i~~~~~~~~~~cP~~~~~~~~~ 255 (281)
...+...+....+.-.+. . ....+.|||+..+-..-|... .| .-|++..+.+.+..+.. -|++|+|++..
T Consensus 15 ~~~l~~kI~~csF~V~~~~f~C~ee~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~~~~-HPLSREpit~s 93 (113)
T PF06416_consen 15 RNQLQDKISSCSFSVNSEEFQCPEEHLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVREGAP-HPLSREPITPS 93 (113)
T ss_dssp ---HHHHHHHC-EE--CCCCTS-CHHH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHCT----TTT-----TT
T ss_pred hHHHHHHHHhcccccChhhccCCHHHcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHcCCC-CCCccCCCChh
Confidence 344555566654332222 2 235688999999999988633 22 45889999999887764 89999999865
Q ss_pred C
Q 023501 256 Q 256 (281)
Q Consensus 256 ~ 256 (281)
-
T Consensus 94 M 94 (113)
T PF06416_consen 94 M 94 (113)
T ss_dssp T
T ss_pred h
Confidence 3
No 431
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=89.94 E-value=2.4 Score=35.14 Aligned_cols=62 Identities=11% Similarity=-0.054 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc--Cc----chhHHHHHHHHHHHhcChHHHHHHHHHHH
Q 023501 48 PIYWTNRALCHLKRNDWTKVEADCRKAIQLD--HD----SVKGHYLLGQTLLQRNEYADGIKELEKAL 109 (281)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~--p~----~~~a~~~la~~~~~~g~~~~A~~~~~kal 109 (281)
..+...+|.-|+..|+|++|+..++.+...- .. ....+..+..++..+|+.+..+...-+.+
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 4455567777888888888888888775432 12 24566677777777888777776654443
No 432
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=89.88 E-value=0.17 Score=34.98 Aligned_cols=27 Identities=11% Similarity=0.114 Sum_probs=23.9
Q ss_pred CCCcccccchHHhHhccCCCCCCCCCCC
Q 023501 224 PSGVTYERAVILDHLDKVGKFDPITREP 251 (281)
Q Consensus 224 ~~g~~~~~~~i~~~~~~~~~~cP~~~~~ 251 (281)
-|+|.|=--||.+|+..... ||+|.++
T Consensus 80 ~CNHaFH~hCisrWlktr~v-CPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRNV-CPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhhcCc-CCCcCcc
Confidence 48999999999999998884 9999865
No 433
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=89.70 E-value=19 Score=34.34 Aligned_cols=30 Identities=20% Similarity=0.323 Sum_probs=18.8
Q ss_pred chHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 023501 9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYT 38 (281)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~ 38 (281)
.-|++...+-.+|..+-..|.-++|++.|-
T Consensus 847 ~Lpe~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 847 TLPEDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred hcCcccchHHHHHHHHHhhchHHHHHHHHH
Confidence 345555566666776666677666666653
No 434
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=89.66 E-value=5.6 Score=39.47 Aligned_cols=98 Identities=14% Similarity=0.066 Sum_probs=73.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCch---HHHHHHHHHHHHh----c---CHHHHHHHHHHHHhhcCcchhHHHHHH
Q 023501 20 DGNYYFSKDRYGAAIDAYTEAITLCPNVP---IYWTNRALCHLKR----N---DWTKVEADCRKAIQLDHDSVKGHYLLG 89 (281)
Q Consensus 20 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~----~---~~~~A~~~~~~al~l~p~~~~a~~~la 89 (281)
..++++..+.|+.|+..|++.-...|+.. ++.+..|.+.+.. | .+.+|+.-+++. --.|.-|--|.-.|
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 559 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKA 559 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHH
Confidence 35678888999999999999999999854 4445556555433 2 356666665543 23466677788889
Q ss_pred HHHHHhcChHHHHHHHHHHHhhccCCCCC
Q 023501 90 QTLLQRNEYADGIKELEKALNLGRGAKPK 118 (281)
Q Consensus 90 ~~~~~~g~~~~A~~~~~kal~~~p~~~~~ 118 (281)
.+|-.+|++++-++.|.-|++-.|..+.-
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 99999999999999999999998875553
No 435
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=89.56 E-value=1 Score=40.98 Aligned_cols=76 Identities=9% Similarity=-0.061 Sum_probs=62.6
Q ss_pred hhhchHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501 6 GLAGVAKQAEQLRLDGNYYFSKD---RYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS 81 (281)
Q Consensus 6 ~~~~~~~~a~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 81 (281)
+++..+.....+-+++.++++++ +--.|+.-...|++++|....+++.++.++..++.+.+|+.....+....|.+
T Consensus 400 a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 400 AIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred HhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence 44555666677777787777654 66678899999999999999999999999999999999999888777777743
No 436
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=89.54 E-value=11 Score=31.65 Aligned_cols=90 Identities=22% Similarity=0.117 Sum_probs=67.5
Q ss_pred HHHHHHHHHhc-----C--CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh----cCHHHHHHHHHHHHhhcCcchhHH
Q 023501 17 LRLDGNYYFSK-----D--RYGAAIDAYTEAITLCPNVPIYWTNRALCHLKR----NDWTKVEADCRKAIQLDHDSVKGH 85 (281)
Q Consensus 17 ~~~~g~~~~~~-----~--~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~al~l~p~~~~a~ 85 (281)
...+|..+..- - +...|+..|.++.... ++.+..++|.+|..- .++++|..++.+|.+... ..+.
T Consensus 151 ~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~ 226 (292)
T COG0790 151 MYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAAC 226 (292)
T ss_pred HHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHH
Confidence 55556555543 1 3347999999987776 788888899888653 389999999999999987 8899
Q ss_pred HHHHHHHHHhc---------------ChHHHHHHHHHHHhh
Q 023501 86 YLLGQTLLQRN---------------EYADGIKELEKALNL 111 (281)
Q Consensus 86 ~~la~~~~~~g---------------~~~~A~~~~~kal~~ 111 (281)
+.++ ++...| +...|..++.++...
T Consensus 227 ~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 266 (292)
T COG0790 227 YNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACEL 266 (292)
T ss_pred HHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHc
Confidence 9999 777666 556666666666555
No 437
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.42 E-value=3.9 Score=36.10 Aligned_cols=88 Identities=16% Similarity=0.189 Sum_probs=69.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc--CHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcC----hHH
Q 023501 27 KDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRN--DWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNE----YAD 100 (281)
Q Consensus 27 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~----~~~ 100 (281)
..-.++-+.+...++..+|+...+|..|..++.+.+ +|..-+..++++++.||.|..+|..+=.+...... ..+
T Consensus 88 ~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~ 167 (421)
T KOG0529|consen 88 QALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKE 167 (421)
T ss_pred HHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchh
Confidence 335667788899999999999999999999998777 47899999999999999999988766555554433 455
Q ss_pred HHHHHHHHHhhccC
Q 023501 101 GIKELEKALNLGRG 114 (281)
Q Consensus 101 A~~~~~kal~~~p~ 114 (281)
-++...+++.-++.
T Consensus 168 El~ftt~~I~~nfS 181 (421)
T KOG0529|consen 168 ELEFTTKLINDNFS 181 (421)
T ss_pred HHHHHHHHHhccch
Confidence 66777777766444
No 438
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=89.28 E-value=0.41 Score=41.10 Aligned_cols=76 Identities=14% Similarity=-0.062 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHH
Q 023501 16 QLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQT 91 (281)
Q Consensus 16 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~ 91 (281)
...+.+..-++.+.+..|+..-..+++.++....+++.++..++.+.++++|+.++..+....|++....-.+..+
T Consensus 277 ~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 277 IRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENV 352 (372)
T ss_pred cccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence 3445677788899999999999999999999999999999999999999999999999999999987655444433
No 439
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=89.28 E-value=18 Score=33.55 Aligned_cols=91 Identities=14% Similarity=0.029 Sum_probs=72.6
Q ss_pred HhcCCHHH-HHHHHHHHHHhCCCchHHHHH--HHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHH
Q 023501 25 FSKDRYGA-AIDAYTEAITLCPNVPIYWTN--RALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADG 101 (281)
Q Consensus 25 ~~~~~~~~-A~~~~~~al~~~p~~~~~~~~--~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A 101 (281)
+..+..+. |+..+...+..+|.++.++.. ++..+..+++...+.-..+.++..+|.+..++..+|.++...|....+
T Consensus 41 l~~~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~ 120 (620)
T COG3914 41 LNAEGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLA 120 (620)
T ss_pred hcccCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHH
Confidence 34444444 778888888889998877444 488888899999999999999999999999999999999998877777
Q ss_pred HHHHHH-HHhhccCC
Q 023501 102 IKELEK-ALNLGRGA 115 (281)
Q Consensus 102 ~~~~~k-al~~~p~~ 115 (281)
+..+.. +....|.+
T Consensus 121 ~~~~~~~a~~~~~~~ 135 (620)
T COG3914 121 LADISEIAEWLSPDN 135 (620)
T ss_pred HHHHHHHHHhcCcch
Confidence 665554 77776653
No 440
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.25 E-value=0.79 Score=26.79 Aligned_cols=23 Identities=13% Similarity=0.070 Sum_probs=12.1
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHH
Q 023501 53 NRALCHLKRNDWTKVEADCRKAI 75 (281)
Q Consensus 53 ~~a~~~~~~~~~~~A~~~~~~al 75 (281)
++|.+|..+|+++.|...+++++
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHH
Confidence 44555555555555555555555
No 441
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=88.93 E-value=1.4 Score=29.30 Aligned_cols=15 Identities=27% Similarity=0.372 Sum_probs=7.0
Q ss_pred HHHHHHHHHHhhccC
Q 023501 100 DGIKELEKALNLGRG 114 (281)
Q Consensus 100 ~A~~~~~kal~~~p~ 114 (281)
+|++.|..++...|+
T Consensus 31 ~aie~l~~~lk~e~d 45 (77)
T cd02683 31 EGIDLLMQVLKGTKD 45 (77)
T ss_pred HHHHHHHHHHhhCCC
Confidence 344444555555443
No 442
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=88.89 E-value=21 Score=34.81 Aligned_cols=64 Identities=17% Similarity=-0.002 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHH----------HhhcC----------cchhHHHHHHHHHHHhcChHHHHHHHHH
Q 023501 48 PIYWTNRALCHLKRNDWTKVEADCRKA----------IQLDH----------DSVKGHYLLGQTLLQRNEYADGIKELEK 107 (281)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~A~~~~~~a----------l~l~p----------~~~~a~~~la~~~~~~g~~~~A~~~~~k 107 (281)
-..|++.|.-+-..++.+.|+++|+++ ++-+| .+...|...|+-+...|+.+.|+..|.+
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 357888888888889999999999875 22234 2456677789999999999999999998
Q ss_pred HHhh
Q 023501 108 ALNL 111 (281)
Q Consensus 108 al~~ 111 (281)
|-+.
T Consensus 938 A~D~ 941 (1416)
T KOG3617|consen 938 AKDY 941 (1416)
T ss_pred hhhh
Confidence 8654
No 443
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.88 E-value=3.3 Score=37.51 Aligned_cols=80 Identities=15% Similarity=0.106 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHH
Q 023501 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLL 93 (281)
Q Consensus 14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~ 93 (281)
...|+.+|..++.+|+++-|..+|.++=+ +..+...|.-.|+-+.-.+....|......+. .-.++.
T Consensus 347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~-----af~~~~ 413 (443)
T PF04053_consen 347 PEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEERGDINI-----AFQAAL 413 (443)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHH-----HHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHccCHHH-----HHHHHH
Confidence 34555555555555555555555555332 33344444555554444444444433322111 223344
Q ss_pred HhcChHHHHHHHH
Q 023501 94 QRNEYADGIKELE 106 (281)
Q Consensus 94 ~~g~~~~A~~~~~ 106 (281)
.+|+.++.++.+.
T Consensus 414 ~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 414 LLGDVEECVDLLI 426 (443)
T ss_dssp HHT-HHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 4455555554444
No 444
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=88.79 E-value=5.5 Score=33.60 Aligned_cols=80 Identities=16% Similarity=0.184 Sum_probs=61.7
Q ss_pred HHhcCCHHHHHHHHHHHHHhC----CC----chHHHHHHHHHHHHhc-CHHHHHHHHHHHHhh----cC---c-------
Q 023501 24 YFSKDRYGAAIDAYTEAITLC----PN----VPIYWTNRALCHLKRN-DWTKVEADCRKAIQL----DH---D------- 80 (281)
Q Consensus 24 ~~~~~~~~~A~~~~~~al~~~----p~----~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l----~p---~------- 80 (281)
..++|+++.|..+|.++-... |+ -+..+++.|...+..+ +++.|..++++|+++ .+ .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 467899999999999986654 33 2478888899888999 999999999999887 21 1
Q ss_pred chhHHHHHHHHHHHhcChHHHHH
Q 023501 81 SVKGHYLLGQTLLQRNEYADGIK 103 (281)
Q Consensus 81 ~~~a~~~la~~~~~~g~~~~A~~ 103 (281)
....+..++.+|...+.++...+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~k 105 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEK 105 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHH
Confidence 24567788899988887654333
No 445
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=88.75 E-value=3.4 Score=39.06 Aligned_cols=85 Identities=7% Similarity=0.048 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHH
Q 023501 10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLG 89 (281)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la 89 (281)
+...-.++.+.|..+.....+++|.++|.+.-. .-+...|++.+++|++- +.....-|++.+.+-.+|
T Consensus 792 D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~L----E~la~~Lpe~s~llp~~a 859 (1189)
T KOG2041|consen 792 DEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGEL----EVLARTLPEDSELLPVMA 859 (1189)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhH----HHHHHhcCcccchHHHHH
Confidence 444567788899999999999999999977533 33567788888887753 444445577777777788
Q ss_pred HHHHHhcChHHHHHHHH
Q 023501 90 QTLLQRNEYADGIKELE 106 (281)
Q Consensus 90 ~~~~~~g~~~~A~~~~~ 106 (281)
+++...|--++|++.|.
T Consensus 860 ~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 860 DMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred HHHHhhchHHHHHHHHH
Confidence 88777777766666553
No 446
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=88.62 E-value=0.12 Score=33.31 Aligned_cols=40 Identities=20% Similarity=0.153 Sum_probs=23.1
Q ss_pred ccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcC
Q 023501 208 LCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLR 253 (281)
Q Consensus 208 ~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~ 253 (281)
..||.|.. |+....|+-+|..|-..+... . .||-|+++|.
T Consensus 2 ~~CP~C~~----~L~~~~~~~~C~~C~~~~~~~-a-~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQ----ELEWQGGHYHCEACQKDYKKE-A-FCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-S----BEEEETTEEEETTT--EEEEE-E-E-TTT-SB-E
T ss_pred CcCCCCCC----ccEEeCCEEECccccccceec-c-cCCCcccHHH
Confidence 57999984 444456899999998876543 3 4999999875
No 447
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=88.53 E-value=5.5 Score=26.52 Aligned_cols=57 Identities=18% Similarity=0.124 Sum_probs=44.4
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhhcCcchh---HHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501 55 ALCHLKRNDWTKVEADCRKAIQLDHDSVK---GHYLLGQTLLQRNEYADGIKELEKALNL 111 (281)
Q Consensus 55 a~~~~~~~~~~~A~~~~~~al~l~p~~~~---a~~~la~~~~~~g~~~~A~~~~~kal~~ 111 (281)
|.=++..++.++|+.-.+++++..++... ++-.+..+|...|+|++++.....-+.+
T Consensus 13 GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 13 GLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33366788899999999999998877655 4445567888999999998887766655
No 448
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=88.52 E-value=15 Score=32.66 Aligned_cols=64 Identities=16% Similarity=0.138 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch--HHHHHHHHHH--HHhcCHHHHHHHHHHHHhh
Q 023501 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVP--IYWTNRALCH--LKRNDWTKVEADCRKAIQL 77 (281)
Q Consensus 14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~a~~~--~~~~~~~~A~~~~~~al~l 77 (281)
+......+..+|..++|..|...+......-|.+. ..+..++.+| ...-++++|.+.++..+..
T Consensus 131 ~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 131 GDREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 35667888999999999999999999988534333 4566665555 4666899999998877653
No 449
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.40 E-value=11 Score=29.91 Aligned_cols=58 Identities=21% Similarity=0.260 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCc-c--hhHHHHHHHHHHHhcChHHHHHHHHHH
Q 023501 51 WTNRALCHLKRNDWTKVEADCRKAIQLDHD-S--VKGHYLLGQTLLQRNEYADGIKELEKA 108 (281)
Q Consensus 51 ~~~~a~~~~~~~~~~~A~~~~~~al~l~p~-~--~~a~~~la~~~~~~g~~~~A~~~~~ka 108 (281)
-..+|..+...|++++|+..++.++....+ + .-+-.++|.++.++|++++|+..+...
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~ 152 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTI 152 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc
Confidence 344677888899999999999999865432 2 345688999999999999999887643
No 450
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=88.10 E-value=5.2 Score=33.09 Aligned_cols=60 Identities=12% Similarity=0.029 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------chHHHHHHHHHHHHhcCHHHHHHHHHH
Q 023501 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN------VPIYWTNRALCHLKRNDWTKVEADCRK 73 (281)
Q Consensus 14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~ 73 (281)
......+|..|+..|+|++|+.+|+.+...... ...+...+..|+..+|+.+..+..+-+
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 344456777777777777777777777544322 235566666777777777766665543
No 451
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=86.85 E-value=4.8 Score=36.89 Aligned_cols=73 Identities=15% Similarity=0.092 Sum_probs=65.5
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501 38 TEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111 (281)
Q Consensus 38 ~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~ 111 (281)
++-|+.+|.|...|+.+-.-+. ...++++...+++.+..-|..+.+|.......+...+|+.-...|.++|.-
T Consensus 10 ~~rie~nP~di~sw~~lire~q-t~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQ-TQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHc-cCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 5678999999999998877554 448999999999999999999999999999999999999999999988854
No 452
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=86.73 E-value=2.1 Score=27.53 Aligned_cols=30 Identities=27% Similarity=0.263 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023501 13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAIT 42 (281)
Q Consensus 13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~ 42 (281)
.|..+...|..+=+.|+|++|+.+|.+|++
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345556666666667777777777766665
No 453
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.73 E-value=1.2 Score=26.05 Aligned_cols=27 Identities=11% Similarity=0.193 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501 85 HYLLGQTLLQRNEYADGIKELEKALNL 111 (281)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~kal~~ 111 (281)
.+.+|.+|+.+|+.+.|...++.++.-
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 367999999999999999999999954
No 454
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=86.67 E-value=2.1 Score=22.26 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=17.2
Q ss_pred CCHHHHHHHHHHHHHhCCCchHHHHHHH
Q 023501 28 DRYGAAIDAYTEAITLCPNVPIYWTNRA 55 (281)
Q Consensus 28 ~~~~~A~~~~~~al~~~p~~~~~~~~~a 55 (281)
|+++.|...|++++...|.++.+|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 3456666666666666666666665444
No 455
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.62 E-value=3.3 Score=34.92 Aligned_cols=58 Identities=16% Similarity=0.025 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHH
Q 023501 16 QLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRK 73 (281)
Q Consensus 16 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 73 (281)
.+...+..|...|.|.+|+.+.++++.++|-+...+..+-..+..+|+--.|.+.+++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 3445577789999999999999999999999999999999999999997777766654
No 456
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=86.60 E-value=22 Score=31.33 Aligned_cols=104 Identities=18% Similarity=0.129 Sum_probs=75.2
Q ss_pred hhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------------CCC------------ch---HHHHHHHHH
Q 023501 7 LAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL--------------CPN------------VP---IYWTNRALC 57 (281)
Q Consensus 7 ~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------------~p~------------~~---~~~~~~a~~ 57 (281)
++..|-....+..++.++..+|+++.|.++.++|+-. ++. |- .+.......
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 3556677888999999999999999999999888632 111 22 334445566
Q ss_pred HHHhcCHHHHHHHHHHHHhhcCc-chhHHHHH-HHHHHHhcChHHHHHHHHHHHh
Q 023501 58 HLKRNDWTKVEADCRKAIQLDHD-SVKGHYLL-GQTLLQRNEYADGIKELEKALN 110 (281)
Q Consensus 58 ~~~~~~~~~A~~~~~~al~l~p~-~~~a~~~l-a~~~~~~g~~~~A~~~~~kal~ 110 (281)
+.+.|-+.-|++.++-.+.+||. ++-+-... -......++|+--++.++....
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 77889999999999999999998 76654444 3444556677766666665444
No 457
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=86.53 E-value=9.7 Score=27.20 Aligned_cols=61 Identities=15% Similarity=0.140 Sum_probs=49.2
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhhcCcch---hHHHHHHHHHHHhcC-----------hHHHHHHHHHHHhhccC
Q 023501 54 RALCHLKRNDWTKVEADCRKAIQLDHDSV---KGHYLLGQTLLQRNE-----------YADGIKELEKALNLGRG 114 (281)
Q Consensus 54 ~a~~~~~~~~~~~A~~~~~~al~l~p~~~---~a~~~la~~~~~~g~-----------~~~A~~~~~kal~~~p~ 114 (281)
+|.-++..|++-+|++..+..+...+++. -.+..-|.++..+.. .-.+++.|.++..+.|.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~ 76 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPD 76 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChh
Confidence 46678899999999999999999987765 567777888877653 35778888888888766
No 458
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=86.36 E-value=0.19 Score=40.37 Aligned_cols=44 Identities=14% Similarity=0.109 Sum_probs=33.2
Q ss_pred cccccCCc-ccccCce----ecC-CCcccccchHHhHhccCCCCCC--CCCC
Q 023501 207 YLCCKITL-DIFRDPV----ITP-SGVTYERAVILDHLDKVGKFDP--ITRE 250 (281)
Q Consensus 207 ~~~c~i~~-~~~~~pv----~~~-~g~~~~~~~i~~~~~~~~~~cP--~~~~ 250 (281)
+-.||+|. +..-+|- +.| |=|.+|-+|+.+-+..++..|| -|++
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 34699996 3444443 356 8899999999999998887899 6754
No 459
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.29 E-value=0.68 Score=29.73 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=27.2
Q ss_pred CcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHH
Q 023501 226 GVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAI 263 (281)
Q Consensus 226 g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l 263 (281)
-+|||.+|.+.-+ ++ .||.|+-.|....+.|--.|
T Consensus 28 EcTFCadCae~~l--~g-~CPnCGGelv~RP~RPaa~L 62 (84)
T COG3813 28 ECTFCADCAENRL--HG-LCPNCGGELVARPIRPAAKL 62 (84)
T ss_pred eeehhHhHHHHhh--cC-cCCCCCchhhcCcCChHHHH
Confidence 4799999999877 34 49999988877777775444
No 460
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=85.90 E-value=0.49 Score=40.13 Aligned_cols=48 Identities=13% Similarity=0.165 Sum_probs=32.1
Q ss_pred CcccccCCcccccC--ce--ecCCCcccccchHHhHhcc-CCCCCCCCCCCcCCC
Q 023501 206 DYLCCKITLDIFRD--PV--ITPSGVTYERAVILDHLDK-VGKFDPITREPLRES 255 (281)
Q Consensus 206 ~~~~c~i~~~~~~~--pv--~~~~g~~~~~~~i~~~~~~-~~~~cP~~~~~~~~~ 255 (281)
+++ ||+|.+.|-- -- .-|||...|+-|....-+. ++ .||-||......
T Consensus 14 ed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lng-rcpacrr~y~de 66 (480)
T COG5175 14 EDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNG-RCPACRRKYDDE 66 (480)
T ss_pred ccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccC-CChHhhhhcccc
Confidence 445 9999877652 11 1469998888886554333 45 499999876654
No 461
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.58 E-value=14 Score=34.87 Aligned_cols=66 Identities=12% Similarity=0.018 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC------cchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 49 IYWTNRALCHLKRNDWTKVEADCRKAIQLDH------DSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p------~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
.++-|-|.-+++..+|..+++.|...++--| .+.+....++.+|..+.+.+.|.++++.|-+.+|.
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~ 426 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ 426 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc
Confidence 4555677788999999999999999988655 45788999999999999999999999999999776
No 462
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=85.37 E-value=0.59 Score=40.62 Aligned_cols=35 Identities=11% Similarity=0.025 Sum_probs=24.9
Q ss_pred cCCCccc-----ccchHHhHhccC------------CCCCCCCCCCcCCCCC
Q 023501 223 TPSGVTY-----ERAVILDHLDKV------------GKFDPITREPLRESQL 257 (281)
Q Consensus 223 ~~~g~~~-----~~~~i~~~~~~~------------~~~cP~~~~~~~~~~~ 257 (281)
.+|+.-| |-+|+-+|+.+. ...||.||.+|+..++
T Consensus 304 ~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV 355 (358)
T PF10272_consen 304 PPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILDV 355 (358)
T ss_pred CCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeeee
Confidence 4566665 558999997542 2369999999986554
No 463
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=85.37 E-value=2.7 Score=27.84 Aligned_cols=31 Identities=26% Similarity=0.202 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAIT 42 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~ 42 (281)
..|..+...|..+=+.|+|++|+.+|..+++
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3455566666777777777777777777766
No 464
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=84.84 E-value=6.9 Score=27.77 Aligned_cols=51 Identities=14% Similarity=0.115 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRN 62 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~ 62 (281)
+.+......|...+..|||+.|.+...++-+..+.....|..-|.+-..+|
T Consensus 57 ~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 57 RKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 344445555555566666666666665554444443444443344433333
No 465
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.41 E-value=40 Score=32.88 Aligned_cols=84 Identities=19% Similarity=0.224 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHH
Q 023501 11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLC-PNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLG 89 (281)
Q Consensus 11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la 89 (281)
...++.+...|+-+|++|+|++|+..|-++|..- |....-. +.......+=..+++...+..-.+..--..|-
T Consensus 365 d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~k------fLdaq~IknLt~YLe~L~~~gla~~dhttlLL 438 (933)
T KOG2114|consen 365 DTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKK------FLDAQRIKNLTSYLEALHKKGLANSDHTTLLL 438 (933)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHH------hcCHHHHHHHHHHHHHHHHcccccchhHHHHH
Confidence 3457788899999999999999999999988763 3221111 12222223333344444444333333334455
Q ss_pred HHHHHhcChHH
Q 023501 90 QTLLQRNEYAD 100 (281)
Q Consensus 90 ~~~~~~g~~~~ 100 (281)
.+|.++++.++
T Consensus 439 ncYiKlkd~~k 449 (933)
T KOG2114|consen 439 NCYIKLKDVEK 449 (933)
T ss_pred HHHHHhcchHH
Confidence 66766666544
No 466
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=83.98 E-value=8.9 Score=28.52 Aligned_cols=81 Identities=9% Similarity=0.058 Sum_probs=42.1
Q ss_pred hcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHH-HHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHH
Q 023501 26 SKDRYGAAIDAYTEAITLCPNVPIYWTNRALCH-LKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKE 104 (281)
Q Consensus 26 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~-~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~ 104 (281)
..|+...-+.+|-.. ..+. =|..+|.-+ ...|.-++--+.+....+.+..+++.+..+|.+|..+|+..+|-+.
T Consensus 68 ~C~NlKrVi~C~~~~----n~~s-e~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~el 142 (161)
T PF09205_consen 68 KCGNLKRVIECYAKR----NKLS-EYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANEL 142 (161)
T ss_dssp G-S-THHHHHHHHHT----T----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred hhcchHHHHHHHHHh----cchH-HHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHH
Confidence 445555666665432 1112 233444433 3445544444455555555566778888888888888888888888
Q ss_pred HHHHHhh
Q 023501 105 LEKALNL 111 (281)
Q Consensus 105 ~~kal~~ 111 (281)
+.+|-+-
T Consensus 143 l~~ACek 149 (161)
T PF09205_consen 143 LKEACEK 149 (161)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 8887665
No 467
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=83.26 E-value=8.1 Score=33.35 Aligned_cols=85 Identities=16% Similarity=0.098 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--cCcchhHHHHHHHHHHHhcChHHHHHHHH
Q 023501 29 RYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQL--DHDSVKGHYLLGQTLLQRNEYADGIKELE 106 (281)
Q Consensus 29 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--~p~~~~a~~~la~~~~~~g~~~~A~~~~~ 106 (281)
+|..-..+|+-...+.| ++.+-.|++.+..+..-.+.++...+-...- -..+...|-..|..+.++|+.++|-..|+
T Consensus 311 DW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~ayd 389 (415)
T COG4941 311 DWPAIDALYDALEQAAP-SPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYD 389 (415)
T ss_pred ChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHH
Confidence 44455555665555555 4777788988887776677776666554433 12455677788999999999999999999
Q ss_pred HHHhhccC
Q 023501 107 KALNLGRG 114 (281)
Q Consensus 107 kal~~~p~ 114 (281)
+++.+.++
T Consensus 390 rAi~La~~ 397 (415)
T COG4941 390 RAIALARN 397 (415)
T ss_pred HHHHhcCC
Confidence 99999655
No 468
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=83.20 E-value=0.64 Score=34.19 Aligned_cols=44 Identities=18% Similarity=0.257 Sum_probs=31.8
Q ss_pred cccccCCcccccC--cee-cCCCc------ccccchHHhHhccCCCCCCCCCCC
Q 023501 207 YLCCKITLDIFRD--PVI-TPSGV------TYERAVILDHLDKVGKFDPITREP 251 (281)
Q Consensus 207 ~~~c~i~~~~~~~--pv~-~~~g~------~~~~~~i~~~~~~~~~~cP~~~~~ 251 (281)
.+.|.||.+-..+ -|+ .+||. .||.+|+.+|-.... .+|.-|..
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~~-rDPfnR~I 78 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRERN-RDPFNRNI 78 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhcc-CCCcccce
Confidence 5669999865555 554 56665 499999999965454 49988754
No 469
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=83.15 E-value=11 Score=24.97 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAIT 42 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~ 42 (281)
..|..+...|..+=+.|+|++|+.+|.++|+
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3455566666777777777777777766665
No 470
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.09 E-value=43 Score=31.79 Aligned_cols=103 Identities=18% Similarity=0.103 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc--
Q 023501 10 VAKQAEQLRLDGNYYF-SKDRYGAAIDAYTEAITLCPNV------PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD-- 80 (281)
Q Consensus 10 ~~~~a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~-- 80 (281)
+...+.....+|..++ ...+++.|..++++++.+...+ ..+.+.++.++.+.+... |...++++|+.-..
T Consensus 55 p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~ 133 (608)
T PF10345_consen 55 PRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYG 133 (608)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccC
Confidence 4557888999999998 7789999999999998886431 234445688888777766 99999999887644
Q ss_pred --chhHHHHHH--HHHHHhcChHHHHHHHHHHHhhcc
Q 023501 81 --SVKGHYLLG--QTLLQRNEYADGIKELEKALNLGR 113 (281)
Q Consensus 81 --~~~a~~~la--~~~~~~g~~~~A~~~~~kal~~~p 113 (281)
.....+++- ..+...+++..|++.++....+..
T Consensus 134 ~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~ 170 (608)
T PF10345_consen 134 HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLAN 170 (608)
T ss_pred chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhh
Confidence 233333333 223233799999999999988853
No 471
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.92 E-value=18 Score=36.17 Aligned_cols=105 Identities=17% Similarity=0.131 Sum_probs=71.3
Q ss_pred hhhhchHHHHHHHH---------HHHHHHHhcCCHHHHHHHHHH------HHHh----------------CCCchHHHHH
Q 023501 5 AGLAGVAKQAEQLR---------LDGNYYFSKDRYGAAIDAYTE------AITL----------------CPNVPIYWTN 53 (281)
Q Consensus 5 ~~~~~~~~~a~~~~---------~~g~~~~~~~~~~~A~~~~~~------al~~----------------~p~~~~~~~~ 53 (281)
.|++.++.....+. +.|......+-|++|-..|.+ |+.. .-+.+.+|+.
T Consensus 1030 tAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsq 1109 (1666)
T KOG0985|consen 1030 TAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQ 1109 (1666)
T ss_pred HHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHH
Confidence 34555555554443 345666666677777666643 1111 2235788899
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 54 RALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 54 ~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
+|.+.++.|...+|++.|-+| +++..|...-.+..+.|.|++-+.++.-+.+....
T Consensus 1110 lakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E 1165 (1666)
T KOG0985|consen 1110 LAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE 1165 (1666)
T ss_pred HHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC
Confidence 999988888899998888554 56777888888888888888888888777766433
No 472
>PF14353 CpXC: CpXC protein
Probab=82.59 E-value=0.85 Score=33.56 Aligned_cols=46 Identities=17% Similarity=0.060 Sum_probs=30.8
Q ss_pred ccccCCcccccCceecCCCcccccchHHhHhccCC--CCCCCCCCCcC
Q 023501 208 LCCKITLDIFRDPVITPSGVTYERAVILDHLDKVG--KFDPITREPLR 253 (281)
Q Consensus 208 ~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~--~~cP~~~~~~~ 253 (281)
+.||-|+..+.-.|-+.=..+-...-.+.-+...- .+||.||..+.
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 57999999888877554444444455666665432 25999997753
No 473
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=82.47 E-value=3.9 Score=21.08 Aligned_cols=30 Identities=13% Similarity=0.047 Sum_probs=24.1
Q ss_pred cCHHHHHHHHHHHHhhcCcchhHHHHHHHH
Q 023501 62 NDWTKVEADCRKAIQLDHDSVKGHYLLGQT 91 (281)
Q Consensus 62 ~~~~~A~~~~~~al~l~p~~~~a~~~la~~ 91 (281)
|+++.|...+++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 467888889999999989888888776653
No 474
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=82.14 E-value=0.83 Score=38.91 Aligned_cols=45 Identities=18% Similarity=0.151 Sum_probs=36.0
Q ss_pred CcccccCCcccccCceecCCCcccccchHHhH--hccCCCCCCCCCCC
Q 023501 206 DYLCCKITLDIFRDPVITPSGVTYERAVILDH--LDKVGKFDPITREP 251 (281)
Q Consensus 206 ~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~--~~~~~~~cP~~~~~ 251 (281)
+...|-||-.-..--.++||||..|-.|-.+. |-... .||+|+..
T Consensus 60 en~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K-~C~~CrTE 106 (493)
T COG5236 60 ENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQK-GCPLCRTE 106 (493)
T ss_pred ccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhcc-CCCccccc
Confidence 46789999988888888999999999998653 43344 49999865
No 475
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.63 E-value=12 Score=37.21 Aligned_cols=60 Identities=10% Similarity=0.049 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQ 76 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 76 (281)
+.+.+|..+|.+.++.|.-.+||+.|-+| +|+..|...-....+.|.|++-++++..|-+
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 45678999999999999999999999664 5567777777777788888887777766644
No 476
>PF12854 PPR_1: PPR repeat
Probab=81.23 E-value=4.1 Score=22.06 Aligned_cols=27 Identities=4% Similarity=-0.213 Sum_probs=17.4
Q ss_pred chHHHHHHHHHHHHhcCHHHHHHHHHH
Q 023501 47 VPIYWTNRALCHLKRNDWTKVEADCRK 73 (281)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~ 73 (281)
|...|..+-..|.+.|+.++|.+.+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 345566666667777777777666553
No 477
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=80.91 E-value=41 Score=30.02 Aligned_cols=101 Identities=11% Similarity=0.056 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh----hcCcchh
Q 023501 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLC------PNVPIYWTNRALCHLKRNDWTKVEADCRKAIQ----LDHDSVK 83 (281)
Q Consensus 14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----l~p~~~~ 83 (281)
+..|+-+...+-..++...-...+...+... -+.+.+.+.+-.+|+..+.|+.|-+...++.- .+..+..
T Consensus 169 ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~AR 248 (493)
T KOG2581|consen 169 AKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWAR 248 (493)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHH
Confidence 4555555555556666555444444443321 22356666677888888899999777666541 2226788
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 84 GHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 84 a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
.+|.+|.+..-+++|..|.+++..|+...|.
T Consensus 249 Y~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 249 YLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 8999999999999999999999999999886
No 478
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.87 E-value=16 Score=32.78 Aligned_cols=98 Identities=17% Similarity=0.214 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----------hCCCchHHHHHHHHHHHHhcCH---HHHH---HHHHHHHh
Q 023501 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAIT-----------LCPNVPIYWTNRALCHLKRNDW---TKVE---ADCRKAIQ 76 (281)
Q Consensus 14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~-----------~~p~~~~~~~~~a~~~~~~~~~---~~A~---~~~~~al~ 76 (281)
+.-+...|.+++..+.|.+|+..+-.|=+ ...+.+......-.||+.+.+. .+|. .-+++.+.
T Consensus 163 glg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~ 242 (568)
T KOG2561|consen 163 GLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFE 242 (568)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhh
Confidence 44567889999999999999988765533 3344555666677889988862 2222 22333332
Q ss_pred h------------c-Ccc------hhHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501 77 L------------D-HDS------VKGHYLLGQTLLQRNEYADGIKELEKALNL 111 (281)
Q Consensus 77 l------------~-p~~------~~a~~~la~~~~~~g~~~~A~~~~~kal~~ 111 (281)
. . +.. ...+..-|.+.+++|+-++|.+.++.+-+.
T Consensus 243 ~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 243 RSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred hhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 2 1 222 344556699999999999999999877643
No 479
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=80.84 E-value=0.55 Score=27.58 Aligned_cols=32 Identities=22% Similarity=0.187 Sum_probs=21.6
Q ss_pred ecCCCcccccchHHhHhccCCCCCCCCCCCcCC
Q 023501 222 ITPSGVTYERAVILDHLDKVGKFDPITREPLRE 254 (281)
Q Consensus 222 ~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~ 254 (281)
+.-+.|=-|..||..-+..+.. ||+|+.+++.
T Consensus 16 i~C~dHYLCl~CLt~ml~~s~~-C~iC~~~LPt 47 (50)
T PF03854_consen 16 IKCSDHYLCLNCLTLMLSRSDR-CPICGKPLPT 47 (50)
T ss_dssp EE-SS-EEEHHHHHHT-SSSSE-ETTTTEE---
T ss_pred eeecchhHHHHHHHHHhccccC-CCcccCcCcc
Confidence 3445688899999999887774 9999999875
No 480
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=80.75 E-value=2.6 Score=27.16 Aligned_cols=16 Identities=13% Similarity=0.447 Sum_probs=7.3
Q ss_pred hcChHHHHHHHHHHHh
Q 023501 95 RNEYADGIKELEKALN 110 (281)
Q Consensus 95 ~g~~~~A~~~~~kal~ 110 (281)
.|++++|+..|.+++.
T Consensus 18 ~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 18 AGNYEEALELYKEAIE 33 (69)
T ss_dssp TTSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 3444444444444443
No 481
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=80.71 E-value=6.2 Score=32.23 Aligned_cols=91 Identities=20% Similarity=0.166 Sum_probs=54.9
Q ss_pred HhcCCHHHHHHHHHHHHHhC---CCc---------hHHHHHHHHHHHHhcC-HHHHHHHHHHHHhh----c-Ccc--hhH
Q 023501 25 FSKDRYGAAIDAYTEAITLC---PNV---------PIYWTNRALCHLKRND-WTKVEADCRKAIQL----D-HDS--VKG 84 (281)
Q Consensus 25 ~~~~~~~~A~~~~~~al~~~---p~~---------~~~~~~~a~~~~~~~~-~~~A~~~~~~al~l----~-p~~--~~a 84 (281)
+..|+|+.|+....-||+.+ |+. ++-...-|......|+ ++-.. ......+ + |+- .+.
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~--~~~~~~l~~~~dmpd~vrAKl 171 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYF--LRVFLDLTTEWDMPDEVRAKL 171 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHH--HHHHHHHHhcCCCChHHHHHH
Confidence 67899999999999999885 332 1222223333344444 22221 1222222 1 333 455
Q ss_pred HHHHHHHHH---------HhcChHHHHHHHHHHHhhccCCCC
Q 023501 85 HYLLGQTLL---------QRNEYADGIKELEKALNLGRGAKP 117 (281)
Q Consensus 85 ~~~la~~~~---------~~g~~~~A~~~~~kal~~~p~~~~ 117 (281)
|-..|..+. ..++...|+.++++|+.++|+.+.
T Consensus 172 ~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GV 213 (230)
T PHA02537 172 YKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGV 213 (230)
T ss_pred HHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCCh
Confidence 566666663 456788999999999999887544
No 482
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=80.70 E-value=6.8 Score=30.67 Aligned_cols=56 Identities=16% Similarity=0.097 Sum_probs=31.8
Q ss_pred CCCCCCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCC-CcccHHHHHHHHHHHH
Q 023501 201 PAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQ-LVPNLAIKEAVRAYMD 272 (281)
Q Consensus 201 ~~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~-~~~n~~l~~~i~~~~~ 272 (281)
...-+..+.||-|+.-++ ..+.+..+ +.||.||.++...+ -.--..|+..|+..-+
T Consensus 111 ~e~~~~~Y~Cp~C~~ryt---------------f~eA~~~~-F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~ 167 (178)
T PRK06266 111 EEENNMFFFCPNCHIRFT---------------FDEAMEYG-FRCPQCGEMLEEYDNSELIKELKEQIKELEE 167 (178)
T ss_pred hccCCCEEECCCCCcEEe---------------HHHHhhcC-CcCCCCCCCCeecccHHHHHHHHHHHHHHHH
Confidence 344467889998763221 12233334 46999999987643 2223445666665533
No 483
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=80.67 E-value=4.3 Score=26.78 Aligned_cols=9 Identities=0% Similarity=-0.270 Sum_probs=3.3
Q ss_pred CHHHHHHHH
Q 023501 63 DWTKVEADC 71 (281)
Q Consensus 63 ~~~~A~~~~ 71 (281)
+|++|+..|
T Consensus 21 ny~eA~~lY 29 (75)
T cd02680 21 NAEEAIELY 29 (75)
T ss_pred hHHHHHHHH
Confidence 333333333
No 484
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=80.62 E-value=4.2 Score=24.78 Aligned_cols=32 Identities=13% Similarity=0.189 Sum_probs=18.9
Q ss_pred cccccCCcccccCceecCCCcccccchHHhHhcc------CCCCCCCCCC
Q 023501 207 YLCCKITLDIFRDPVITPSGVTYERAVILDHLDK------VGKFDPITRE 250 (281)
Q Consensus 207 ~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~------~~~~cP~~~~ 250 (281)
.|.||.|++ -.+ ...|..++.. ....||+|..
T Consensus 2 ~f~CP~C~~-~~~-----------~~~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 2 SFTCPYCGK-GFS-----------ESSLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CcCCCCCCC-ccC-----------HHHHHHHHHhHCcCCCCCccCCCchh
Confidence 578999886 222 3444444332 2235999975
No 485
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=80.55 E-value=97 Score=34.13 Aligned_cols=112 Identities=14% Similarity=0.039 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc-Cc--------
Q 023501 10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD-HD-------- 80 (281)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-p~-------- 80 (281)
....++.|...|...-+.|.++-|-.+.-.|.+.. -+.++..+|..+...|+-..|+..+++.+.++ |+
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~ 1743 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDT 1743 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcccc
Confidence 56678899999999999999999999999988776 58899999999999999999999999999765 22
Q ss_pred --------chhHHHHHHHHHHHhcCh--HHHHHHHHHHHhhccCCCCCcchHH
Q 023501 81 --------SVKGHYLLGQTLLQRNEY--ADGIKELEKALNLGRGAKPKGYIVE 123 (281)
Q Consensus 81 --------~~~a~~~la~~~~~~g~~--~~A~~~~~kal~~~p~~~~~~~~~~ 123 (281)
..++.+..+.-....|++ .+-+..|..+.++.|.-.+..+...
T Consensus 1744 p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1744 PQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred chhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 122344444444445553 4557889999999886666655554
No 486
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.39 E-value=0.63 Score=38.64 Aligned_cols=30 Identities=10% Similarity=0.058 Sum_probs=21.9
Q ss_pred ccccchHHhHhcc------------CCCCCCCCCCCcCCCCC
Q 023501 228 TYERAVILDHLDK------------VGKFDPITREPLRESQL 257 (281)
Q Consensus 228 ~~~~~~i~~~~~~------------~~~~cP~~~~~~~~~~~ 257 (281)
-.|++||-+|+.. ++..||.||+.++..++
T Consensus 328 ~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv 369 (381)
T KOG3899|consen 328 LWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDV 369 (381)
T ss_pred HHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeee
Confidence 4678999998643 23469999999876543
No 487
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=80.34 E-value=0.97 Score=37.76 Aligned_cols=43 Identities=12% Similarity=0.070 Sum_probs=35.6
Q ss_pred cccccCCcccccC----ceecCCCcccccchHHhHhccCCCCCCCCCC
Q 023501 207 YLCCKITLDIFRD----PVITPSGVTYERAVILDHLDKVGKFDPITRE 250 (281)
Q Consensus 207 ~~~c~i~~~~~~~----pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~ 250 (281)
.+.||||.+.++. |...+|||+.=..|.++....+ .+||+|..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 4559999877664 6678999998889999988877 67999976
No 488
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.94 E-value=1.3 Score=39.62 Aligned_cols=69 Identities=14% Similarity=0.275 Sum_probs=51.5
Q ss_pred CCCCCcccccCC-cccccCceec--CCCcccccchHHhHhccCCCCCCCCCCC-cCCCCCcccHHHHHHHHHHHH
Q 023501 202 AEVPDYLCCKIT-LDIFRDPVIT--PSGVTYERAVILDHLDKVGKFDPITREP-LRESQLVPNLAIKEAVRAYMD 272 (281)
Q Consensus 202 ~~~p~~~~c~i~-~~~~~~pv~~--~~g~~~~~~~i~~~~~~~~~~cP~~~~~-~~~~~~~~n~~l~~~i~~~~~ 272 (281)
...+..+.|++| ...|.+-.++ .|+.+||..||.+.+.... ||.|..- .....+.++..++..+...+.
T Consensus 214 ~~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~~~--~~~c~~~~~~~~~~~~p~~~r~~~n~~~a 286 (448)
T KOG0314|consen 214 GELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALISKS--MCVCGASNVLADDLLPPKTLRDTINRILA 286 (448)
T ss_pred ccCCccccCceecchhhHHHHHhhhhhcccCCcccccccccccc--CCcchhhcccccccCCchhhHHHHHHHHh
Confidence 345778999999 7889887765 3789999999999997655 6777543 344577788777777666543
No 489
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=79.33 E-value=67 Score=31.59 Aligned_cols=102 Identities=18% Similarity=0.169 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---------chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc--
Q 023501 13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN---------VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS-- 81 (281)
Q Consensus 13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-- 81 (281)
.+......+.......+|.+|-....++...-+. .+.+-..+|.+....|++++|.+.++.++..-|.+
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 4555667788889999999999888887655333 24566667888888999999999999999888754
Q ss_pred ---hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 82 ---VKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 82 ---~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
.-++...|.+..-.|++++|......+.++...
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~ 529 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQ 529 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 457778899999999999999999998888543
No 490
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=79.21 E-value=5.1 Score=26.32 Aligned_cols=14 Identities=29% Similarity=0.337 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHhhc
Q 023501 65 TKVEADCRKAIQLD 78 (281)
Q Consensus 65 ~~A~~~~~~al~l~ 78 (281)
++|.....+|++.+
T Consensus 6 ~~A~~li~~Av~~d 19 (77)
T smart00745 6 SKAKELISKALKAD 19 (77)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 491
>PF13041 PPR_2: PPR repeat family
Probab=78.66 E-value=11 Score=22.14 Aligned_cols=27 Identities=4% Similarity=-0.055 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 023501 50 YWTNRALCHLKRNDWTKVEADCRKAIQ 76 (281)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~al~ 76 (281)
.|..+-..|.+.|++++|.+.+++-.+
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344444444455555555555544443
No 492
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=78.37 E-value=28 Score=31.34 Aligned_cols=61 Identities=7% Similarity=-0.009 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 85 HYLLGQTLLQRNEYADGIKELEKALNLGRGAKP-KGYIVEDIWQELARAKYLLWEQESSKRS 145 (281)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 145 (281)
....|.-+...|++.+|+..|+.+|...|-... ......++.+.+..++.++...+.+..+
T Consensus 207 ~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~R 268 (422)
T PF06957_consen 207 RLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELER 268 (422)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577778889999999999999988765322 2334667888888888877665555443
No 493
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=78.16 E-value=6.5 Score=25.82 Aligned_cols=29 Identities=21% Similarity=0.169 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023501 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAIT 42 (281)
Q Consensus 14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~ 42 (281)
+..+...|...=..|+|++|+.+|.+|++
T Consensus 6 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 6 AIELVKKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455555556666666666666665554
No 494
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=78.16 E-value=5.5 Score=26.26 Aligned_cols=32 Identities=31% Similarity=0.251 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL 43 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 43 (281)
+.+..+...|..-=..|+|++|+.+|..|++.
T Consensus 4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 45666777788888899999999999999984
No 495
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=78.02 E-value=7.6 Score=30.28 Aligned_cols=52 Identities=12% Similarity=0.043 Sum_probs=32.3
Q ss_pred CCCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCc-ccHHHHHHHHHHH
Q 023501 204 VPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLV-PNLAIKEAVRAYM 271 (281)
Q Consensus 204 ~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~-~n~~l~~~i~~~~ 271 (281)
.+..|.||.|.. +....+....+. +||.||..+...+.. ....+...+++..
T Consensus 110 ~~~~y~C~~~~~---------------r~sfdeA~~~~F-~Cp~Cg~~L~~~d~s~~i~~l~~~i~~l~ 162 (176)
T COG1675 110 ENNYYVCPNCHV---------------KYSFDEAMELGF-TCPKCGEDLEEYDSSEEIEELESELDELE 162 (176)
T ss_pred cCCceeCCCCCC---------------cccHHHHHHhCC-CCCCCCchhhhccchHHHHHHHHHHHHHH
Confidence 356788886652 344445555444 699999998755433 3455666666653
No 496
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.98 E-value=2.8 Score=37.18 Aligned_cols=66 Identities=12% Similarity=0.153 Sum_probs=38.6
Q ss_pred cccccCCc-ccccCc---eecCCCcccccchHHhHhccC-----CCCCCCCC--CCcCCC---CCcccHHHHHHHHHHHH
Q 023501 207 YLCCKITL-DIFRDP---VITPSGVTYERAVILDHLDKV-----GKFDPITR--EPLRES---QLVPNLAIKEAVRAYMD 272 (281)
Q Consensus 207 ~~~c~i~~-~~~~~p---v~~~~g~~~~~~~i~~~~~~~-----~~~cP~~~--~~~~~~---~~~~n~~l~~~i~~~~~ 272 (281)
...|.||. +.+... .+..|||.||..|+.+++... ...||.-+ ..++.. .+.++ .++...+.++.
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~c~~llt~-kl~e~~e~~~~ 224 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLESCRKLLTP-KLREMWEQRLK 224 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHHHhhhcCH-HHHHHHHHHHH
Confidence 45689998 333321 156799999999999998742 22365533 334432 33343 45555555543
Q ss_pred H
Q 023501 273 K 273 (281)
Q Consensus 273 ~ 273 (281)
+
T Consensus 225 e 225 (384)
T KOG1812|consen 225 E 225 (384)
T ss_pred H
Confidence 3
No 497
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=77.69 E-value=25 Score=26.22 Aligned_cols=63 Identities=10% Similarity=-0.068 Sum_probs=40.8
Q ss_pred HHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 023501 16 QLRLDGNYYF-SKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD 78 (281)
Q Consensus 16 ~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~ 78 (281)
.+.++|..++ .+|+-++--+.+......+..++.++..+|.+|.++|+..+|.+.+.+|.+..
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3445554444 45555555555666555556689999999999999999999999999998765
No 498
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=77.55 E-value=29 Score=32.99 Aligned_cols=96 Identities=19% Similarity=0.174 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--------------------------chHHHHHHHHHHHHhcCHHHH
Q 023501 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN--------------------------VPIYWTNRALCHLKRNDWTKV 67 (281)
Q Consensus 14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--------------------------~~~~~~~~a~~~~~~~~~~~A 67 (281)
+-.+..-|......+..+.|.+++.+++..-.+ ...+....+.+.+-+++|..|
T Consensus 301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a 380 (608)
T PF10345_consen 301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKA 380 (608)
T ss_pred HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence 334555677778888777888888888755111 123455567778888999999
Q ss_pred HHHHHHHHhhc---C------cchhHHHHHHHHHHHhcChHHHHHHHHHHH
Q 023501 68 EADCRKAIQLD---H------DSVKGHYLLGQTLLQRNEYADGIKELEKAL 109 (281)
Q Consensus 68 ~~~~~~al~l~---p------~~~~a~~~la~~~~~~g~~~~A~~~~~kal 109 (281)
......+.... | ..+..++..|..+...|+.+.|...|.+..
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~ 431 (608)
T PF10345_consen 381 TQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPR 431 (608)
T ss_pred HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhH
Confidence 99888777653 2 247788999999999999999999998444
No 499
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.19 E-value=59 Score=29.80 Aligned_cols=138 Identities=14% Similarity=0.052 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCC-------chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC-cc--
Q 023501 15 EQLRLDGNYYFSKDRYGAAIDAYTEAITL---CPN-------VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDH-DS-- 81 (281)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p-~~-- 81 (281)
..+..+...-+-.|++.+|+.-...+.+. .|. .+.+.+.+|.-....|.|+.|...|..|.++-. .+
T Consensus 324 ~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~ 403 (629)
T KOG2300|consen 324 ILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQ 403 (629)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHH
Confidence 34445566667889999998877666544 454 345555666655566789999999999998753 33
Q ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 82 VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEE 161 (281)
Q Consensus 82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (281)
.-+..++|.+|...|+-+.-.+.++ .+.|.+... .. ....++....-.+.-....+++++++..+.+.|+-
T Consensus 404 a~~nlnlAi~YL~~~~~ed~y~~ld---~i~p~nt~s--~s----sq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkm 474 (629)
T KOG2300|consen 404 AFCNLNLAISYLRIGDAEDLYKALD---LIGPLNTNS--LS----SQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKM 474 (629)
T ss_pred HHHHHhHHHHHHHhccHHHHHHHHH---hcCCCCCCc--ch----HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 3445678999999887654333333 234443222 11 11111222233333444556666666666665553
No 500
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=76.79 E-value=7.4 Score=25.54 Aligned_cols=30 Identities=23% Similarity=0.271 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023501 13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAIT 42 (281)
Q Consensus 13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~ 42 (281)
.|..+...|..+=..|+|++|+.+|..|++
T Consensus 7 ~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 7 KAKELISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555556666666666655554
Done!