Query 023501
Match_columns 281
No_of_seqs 332 out of 3093
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 07:55:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023501.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023501hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c2l_A CHIP, carboxy terminus 100.0 9E-46 3.1E-50 312.3 24.3 265 12-280 2-281 (281)
2 2f42_A STIP1 homology and U-bo 100.0 3.1E-32 1.1E-36 209.5 11.2 160 121-280 11-179 (179)
3 1wgm_A Ubiquitin conjugation f 99.9 1.1E-23 3.8E-28 147.4 8.1 78 200-278 15-93 (98)
4 4gco_A Protein STI-1; structur 99.9 6E-22 2E-26 146.4 16.4 108 8-115 7-114 (126)
5 2kr4_A Ubiquitin conjugation f 99.9 2.1E-23 7.3E-28 142.4 6.0 74 201-275 8-81 (85)
6 2kre_A Ubiquitin conjugation f 99.9 3.2E-23 1.1E-27 145.6 6.9 75 200-275 22-96 (100)
7 3gyz_A Chaperone protein IPGC; 99.8 3.2E-20 1.1E-24 141.4 15.4 113 2-114 24-136 (151)
8 1t1h_A Gspef-atpub14, armadill 99.8 1.5E-21 5.1E-26 131.7 5.6 76 201-276 2-77 (78)
9 2hr2_A Hypothetical protein; a 99.8 1.9E-19 6.5E-24 136.5 16.6 108 11-118 8-138 (159)
10 4gcn_A Protein STI-1; structur 99.8 2.4E-19 8.4E-24 132.5 15.5 105 10-114 4-115 (127)
11 2vgx_A Chaperone SYCD; alterna 99.8 2.8E-19 9.4E-24 135.8 15.8 116 2-117 9-124 (148)
12 2xcb_A PCRH, regulatory protei 99.8 4.6E-19 1.6E-23 133.4 16.4 116 2-117 6-121 (142)
13 3upv_A Heat shock protein STI1 99.8 8.5E-19 2.9E-23 128.8 16.4 103 11-113 1-103 (126)
14 3rkv_A Putative peptidylprolyl 99.8 6E-19 2E-23 135.5 15.0 104 11-114 8-129 (162)
15 4ga2_A E3 SUMO-protein ligase 99.8 4.3E-19 1.5E-23 135.0 12.1 113 3-115 20-133 (150)
16 2yu4_A E3 SUMO-protein ligase 99.8 3.2E-20 1.1E-24 129.3 4.8 72 204-275 4-84 (94)
17 3sz7_A HSC70 cochaperone (SGT) 99.8 1E-17 3.5E-22 128.8 17.2 109 9-117 6-114 (164)
18 4gyw_A UDP-N-acetylglucosamine 99.8 3E-18 1E-22 161.0 16.0 141 9-165 4-144 (723)
19 3q49_B STIP1 homology and U bo 99.8 6.9E-18 2.3E-22 125.3 14.7 127 10-138 5-131 (137)
20 3urz_A Uncharacterized protein 99.8 2.4E-17 8.3E-22 132.0 17.9 152 13-164 3-189 (208)
21 2pl2_A Hypothetical conserved 99.8 8.8E-18 3E-22 135.5 15.3 103 12-114 3-116 (217)
22 2pl2_A Hypothetical conserved 99.8 2E-17 6.8E-22 133.4 16.2 139 2-164 27-183 (217)
23 3ztg_A E3 ubiquitin-protein li 99.8 1.5E-18 5.3E-23 120.7 7.9 79 199-277 5-86 (92)
24 3vtx_A MAMA; tetratricopeptide 99.7 1.7E-16 5.7E-21 123.9 18.0 166 12-193 3-169 (184)
25 4gyw_A UDP-N-acetylglucosamine 99.7 2.1E-17 7.1E-22 155.3 14.4 114 2-115 31-144 (723)
26 1p5q_A FKBP52, FK506-binding p 99.7 8.9E-17 3.1E-21 138.3 17.3 113 3-115 136-263 (336)
27 1kt0_A FKBP51, 51 kDa FK506-bi 99.7 1.3E-16 4.4E-21 142.9 17.3 114 4-117 258-386 (457)
28 1hxi_A PEX5, peroxisome target 99.7 8.6E-17 2.9E-21 117.6 12.9 100 15-114 18-117 (121)
29 4i17_A Hypothetical protein; T 99.7 1.7E-16 5.7E-21 128.4 15.8 100 15-114 8-108 (228)
30 2fbn_A 70 kDa peptidylprolyl i 99.7 5.1E-16 1.8E-20 123.0 17.6 109 6-114 30-154 (198)
31 3vtx_A MAMA; tetratricopeptide 99.7 3.4E-16 1.2E-20 122.2 16.2 146 3-164 28-173 (184)
32 4i17_A Hypothetical protein; T 99.7 1.3E-15 4.5E-20 123.0 19.7 109 3-111 30-139 (228)
33 2h6f_A Protein farnesyltransfe 99.7 1E-16 3.5E-21 140.2 13.4 143 6-164 89-232 (382)
34 3urz_A Uncharacterized protein 99.7 4.7E-16 1.6E-20 124.4 14.8 94 3-96 27-136 (208)
35 2h6f_A Protein farnesyltransfe 99.7 7.5E-17 2.6E-21 141.0 10.6 114 2-115 119-233 (382)
36 1a17_A Serine/threonine protei 99.7 1.1E-14 3.6E-19 111.1 20.6 105 10-114 9-113 (166)
37 4ga2_A E3 SUMO-protein ligase 99.7 2.9E-17 9.8E-22 124.8 5.7 97 19-115 2-98 (150)
38 1elw_A TPR1-domain of HOP; HOP 99.7 3.5E-15 1.2E-19 106.8 16.0 102 13-114 3-104 (118)
39 2e2e_A Formate-dependent nitri 99.7 2.1E-15 7.3E-20 117.0 15.6 114 3-116 33-149 (177)
40 2vyi_A SGTA protein; chaperone 99.7 1.8E-15 6.2E-20 110.3 14.3 108 7-114 5-112 (131)
41 2lni_A Stress-induced-phosphop 99.7 8.9E-16 3E-20 112.6 11.8 106 9-114 11-116 (133)
42 2bay_A PRE-mRNA splicing facto 99.7 2E-17 6.9E-22 104.8 2.1 54 207-261 3-57 (61)
43 3fl2_A E3 ubiquitin-protein li 99.7 7.3E-17 2.5E-21 118.5 5.3 69 205-273 50-119 (124)
44 1ihg_A Cyclophilin 40; ppiase 99.7 2.7E-15 9.3E-20 130.7 16.0 105 10-114 219-339 (370)
45 3qky_A Outer membrane assembly 99.7 1.5E-14 5.1E-19 119.4 19.7 156 9-164 10-180 (261)
46 3m62_A Ubiquitin conjugation f 99.7 4E-16 1.4E-20 146.0 11.1 74 201-275 885-959 (968)
47 2dba_A Smooth muscle cell asso 99.7 3.1E-15 1.1E-19 111.9 14.1 106 9-114 23-131 (148)
48 1elr_A TPR2A-domain of HOP; HO 99.6 2.7E-15 9.1E-20 109.5 12.6 103 12-114 2-111 (131)
49 2kck_A TPR repeat; tetratricop 99.6 8.7E-16 3E-20 109.1 9.8 105 11-115 3-110 (112)
50 2if4_A ATFKBP42; FKBP-like, al 99.6 4.3E-16 1.5E-20 134.1 9.0 111 7-117 172-299 (338)
51 2xev_A YBGF; tetratricopeptide 99.6 2.9E-15 1E-19 109.7 11.7 100 15-114 3-108 (129)
52 4abn_A Tetratricopeptide repea 99.6 6.9E-15 2.4E-19 132.2 16.5 109 6-115 94-212 (474)
53 3as5_A MAMA; tetratricopeptide 99.6 1.6E-14 5.6E-19 111.5 16.3 102 13-114 7-108 (186)
54 1z6u_A NP95-like ring finger p 99.6 1.5E-16 5E-21 120.2 4.2 68 205-272 76-144 (150)
55 2yhc_A BAMD, UPF0169 lipoprote 99.6 5.6E-14 1.9E-18 113.6 19.8 176 13-192 3-211 (225)
56 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.9E-14 9.9E-19 117.6 18.4 105 10-114 39-143 (275)
57 2q7f_A YRRB protein; TPR, prot 99.6 2.1E-14 7.2E-19 116.2 17.0 146 2-163 45-190 (243)
58 3qky_A Outer membrane assembly 99.6 6.9E-14 2.4E-18 115.3 20.1 159 3-165 38-228 (261)
59 2vsy_A XCC0866; transferase, g 99.6 9.1E-15 3.1E-19 134.2 15.8 147 2-164 11-160 (568)
60 4abn_A Tetratricopeptide repea 99.6 7.3E-15 2.5E-19 132.1 14.3 146 2-164 125-290 (474)
61 2y4t_A DNAJ homolog subfamily 99.6 4.2E-14 1.4E-18 125.1 18.5 157 3-163 15-174 (450)
62 1zu2_A Mitochondrial import re 99.6 7.7E-15 2.6E-19 110.9 11.4 90 25-114 13-123 (158)
63 3ieg_A DNAJ homolog subfamily 99.6 7.4E-14 2.5E-18 119.1 19.0 148 13-164 2-152 (359)
64 3uq3_A Heat shock protein STI1 99.6 4.5E-14 1.5E-18 115.1 16.8 110 4-113 129-238 (258)
65 3gyz_A Chaperone protein IPGC; 99.6 9.4E-16 3.2E-20 116.6 6.3 119 30-164 18-136 (151)
66 1w3b_A UDP-N-acetylglucosamine 99.6 1.5E-14 5.1E-19 126.0 14.8 111 4-114 23-133 (388)
67 4eqf_A PEX5-related protein; a 99.6 3.5E-14 1.2E-18 122.5 16.3 75 6-80 91-165 (365)
68 2vq2_A PILW, putative fimbrial 99.6 1.7E-13 5.8E-18 109.3 19.1 141 9-163 3-144 (225)
69 1w3b_A UDP-N-acetylglucosamine 99.6 4.8E-14 1.7E-18 122.7 17.1 145 4-164 57-201 (388)
70 1na0_A Designed protein CTPR3; 99.6 3.5E-14 1.2E-18 102.5 13.6 102 13-114 8-109 (125)
71 2pzi_A Probable serine/threoni 99.6 2E-15 6.8E-20 141.6 8.5 140 8-164 427-566 (681)
72 2q7f_A YRRB protein; TPR, prot 99.6 3.4E-14 1.2E-18 115.0 14.7 146 3-164 80-225 (243)
73 2y43_A E3 ubiquitin-protein li 99.6 1.4E-15 4.8E-20 107.0 5.5 68 206-274 21-89 (99)
74 3uq3_A Heat shock protein STI1 99.6 4.8E-14 1.6E-18 114.9 15.6 144 4-163 62-238 (258)
75 2fo7_A Synthetic consensus TPR 99.6 7.9E-14 2.7E-18 101.7 15.2 132 15-162 2-133 (136)
76 3htk_C E3 SUMO-protein ligase 99.6 9.9E-16 3.4E-20 123.2 5.1 68 205-272 179-250 (267)
77 2ho1_A Type 4 fimbrial biogene 99.6 7.8E-14 2.7E-18 113.8 16.1 97 14-110 37-133 (252)
78 2vq2_A PILW, putative fimbrial 99.6 9.6E-14 3.3E-18 110.7 16.2 145 3-163 31-178 (225)
79 1hh8_A P67PHOX, NCF-2, neutrop 99.6 5.7E-14 2E-18 111.9 14.8 141 11-163 3-152 (213)
80 3as5_A MAMA; tetratricopeptide 99.6 9.9E-14 3.4E-18 107.1 15.8 145 3-163 31-175 (186)
81 3lrq_A E3 ubiquitin-protein li 99.6 1.3E-15 4.5E-20 107.2 4.6 69 206-274 21-90 (100)
82 3hym_B Cell division cycle pro 99.6 9.7E-14 3.3E-18 117.2 17.0 170 10-195 52-223 (330)
83 4gco_A Protein STI-1; structur 99.6 1.8E-14 6.1E-19 106.0 10.5 90 3-92 36-125 (126)
84 3k9i_A BH0479 protein; putativ 99.6 3.4E-15 1.2E-19 108.1 6.4 89 26-114 2-93 (117)
85 4ayc_A E3 ubiquitin-protein li 99.6 2E-14 6.7E-19 107.4 10.6 62 207-271 53-114 (138)
86 2egp_A Tripartite motif-contai 99.6 1.5E-16 5.2E-21 107.2 -0.8 66 201-266 6-77 (79)
87 2l6j_A TPR repeat-containing p 99.6 4.3E-15 1.5E-19 105.8 6.7 94 13-106 3-102 (111)
88 3hym_B Cell division cycle pro 99.6 1.2E-13 4.1E-18 116.7 16.9 144 3-162 79-223 (330)
89 3ieg_A DNAJ homolog subfamily 99.6 4.4E-13 1.5E-17 114.3 20.3 157 4-164 95-266 (359)
90 2fo7_A Synthetic consensus TPR 99.6 1E-13 3.5E-18 101.1 13.8 112 3-114 24-135 (136)
91 1jm7_B BARD1, BRCA1-associated 99.6 5.2E-15 1.8E-19 107.3 6.4 65 206-273 21-86 (117)
92 2gw1_A Mitochondrial precursor 99.6 7.5E-13 2.6E-17 118.7 21.9 103 11-114 3-105 (514)
93 2ckl_A Polycomb group ring fin 99.6 2.3E-15 7.9E-20 107.6 4.3 66 205-271 13-83 (108)
94 1hh8_A P67PHOX, NCF-2, neutrop 99.6 1.1E-13 3.7E-18 110.2 14.6 102 13-114 36-153 (213)
95 2ho1_A Type 4 fimbrial biogene 99.5 1.2E-13 4.2E-18 112.6 15.2 112 3-114 60-173 (252)
96 4eqf_A PEX5-related protein; a 99.5 8E-14 2.7E-18 120.2 14.7 115 3-117 200-316 (365)
97 1wao_1 Serine/threonine protei 99.5 1.5E-14 5E-19 130.2 10.2 107 11-117 3-109 (477)
98 1fch_A Peroxisomal targeting s 99.5 4.1E-13 1.4E-17 115.5 18.8 105 14-118 64-168 (368)
99 3fp2_A TPR repeat-containing p 99.5 4.2E-13 1.4E-17 121.2 19.7 116 3-118 299-414 (537)
100 3hct_A TNF receptor-associated 99.5 2.5E-15 8.5E-20 109.2 3.9 70 201-270 12-81 (118)
101 2csy_A Zinc finger protein 183 99.5 3.2E-15 1.1E-19 101.1 3.8 64 202-267 10-73 (81)
102 2pzi_A Probable serine/threoni 99.5 1.9E-14 6.4E-19 135.0 9.9 111 3-114 456-566 (681)
103 2yur_A Retinoblastoma-binding 99.5 1.4E-14 4.9E-19 96.0 6.2 61 200-260 8-71 (74)
104 1fch_A Peroxisomal targeting s 99.5 7E-14 2.4E-18 120.3 12.1 113 3-115 204-318 (368)
105 2ecw_A Tripartite motif-contai 99.5 1.5E-15 5E-20 103.9 1.1 66 201-266 13-83 (85)
106 3u4t_A TPR repeat-containing p 99.5 1.3E-13 4.4E-18 113.7 12.6 100 14-114 3-106 (272)
107 2ecv_A Tripartite motif-contai 99.5 2.2E-15 7.4E-20 103.0 1.5 66 201-266 13-83 (85)
108 2ecy_A TNF receptor-associated 99.5 1.6E-14 5.4E-19 93.6 5.5 57 201-257 9-65 (66)
109 3u4t_A TPR repeat-containing p 99.5 5.6E-14 1.9E-18 115.9 10.2 111 3-114 26-140 (272)
110 3l11_A E3 ubiquitin-protein li 99.5 5.3E-15 1.8E-19 107.0 3.5 68 204-271 12-86 (115)
111 2r5s_A Uncharacterized protein 99.5 2.1E-13 7.2E-18 105.8 12.8 114 3-117 29-143 (176)
112 1jm7_A BRCA1, breast cancer ty 99.5 7.3E-15 2.5E-19 105.8 4.1 66 207-272 21-88 (112)
113 2vgx_A Chaperone SYCD; alterna 99.5 6.4E-14 2.2E-18 106.0 9.3 114 34-163 7-120 (148)
114 2y4t_A DNAJ homolog subfamily 99.5 9.3E-13 3.2E-17 116.4 18.4 144 17-164 146-289 (450)
115 2e2e_A Formate-dependent nitri 99.5 9.5E-14 3.3E-18 107.6 9.9 129 20-164 16-147 (177)
116 2ckl_B Ubiquitin ligase protei 99.5 8E-15 2.7E-19 113.0 3.7 68 204-271 51-120 (165)
117 3fp2_A TPR repeat-containing p 99.5 7.4E-13 2.5E-17 119.6 17.1 142 6-164 269-410 (537)
118 2yhc_A BAMD, UPF0169 lipoprote 99.5 3.5E-13 1.2E-17 108.9 13.4 137 13-162 40-214 (225)
119 2djb_A Polycomb group ring fin 99.5 3.3E-14 1.1E-18 93.8 6.0 59 201-260 9-68 (72)
120 3cv0_A Peroxisome targeting si 99.5 1.3E-12 4.3E-17 110.2 16.8 114 3-116 161-274 (327)
121 1qqe_A Vesicular transport pro 99.5 6.7E-13 2.3E-17 111.6 14.4 108 10-117 73-193 (292)
122 3cv0_A Peroxisome targeting si 99.5 9.5E-12 3.2E-16 104.8 21.4 107 12-118 19-125 (327)
123 1a17_A Serine/threonine protei 99.5 7.2E-13 2.5E-17 100.8 13.2 110 3-112 36-147 (166)
124 1na3_A Designed protein CTPR2; 99.5 7.5E-13 2.6E-17 90.5 12.0 86 11-96 6-91 (91)
125 3qou_A Protein YBBN; thioredox 99.5 7.2E-13 2.5E-17 111.2 14.1 139 11-165 114-252 (287)
126 2kat_A Uncharacterized protein 99.5 1.1E-12 3.9E-17 94.2 12.8 85 31-115 2-86 (115)
127 4gcn_A Protein STI-1; structur 99.5 7.3E-13 2.5E-17 97.4 11.9 108 47-163 7-114 (127)
128 2xcb_A PCRH, regulatory protei 99.5 1.1E-12 3.6E-17 98.2 12.9 113 35-163 5-117 (142)
129 2xpi_A Anaphase-promoting comp 99.5 2.9E-12 1E-16 117.4 18.3 110 5-114 364-473 (597)
130 2ond_A Cleavage stimulation fa 99.5 2.7E-12 9.3E-17 108.6 16.4 113 2-114 38-166 (308)
131 1p5q_A FKBP52, FK506-binding p 99.5 8.2E-13 2.8E-17 113.5 13.2 100 12-111 194-294 (336)
132 2ysl_A Tripartite motif-contai 99.4 1.1E-13 3.6E-18 91.7 5.9 57 201-257 14-72 (73)
133 1xnf_A Lipoprotein NLPI; TPR, 99.4 1E-12 3.5E-17 108.2 13.3 112 3-115 66-177 (275)
134 2vsy_A XCC0866; transferase, g 99.4 1.2E-12 4.1E-17 120.1 14.9 114 3-116 46-162 (568)
135 2gw1_A Mitochondrial precursor 99.4 1.7E-12 5.9E-17 116.3 15.6 115 3-117 293-407 (514)
136 2xpi_A Anaphase-promoting comp 99.4 3.8E-12 1.3E-16 116.6 18.2 113 3-115 328-440 (597)
137 3qou_A Protein YBBN; thioredox 99.4 2.5E-13 8.5E-18 114.1 9.4 114 2-115 139-252 (287)
138 1rmd_A RAG1; V(D)J recombinati 99.4 2.2E-14 7.7E-19 103.9 2.4 67 204-270 20-87 (116)
139 3hcs_A TNF receptor-associated 99.4 4.4E-14 1.5E-18 109.4 3.9 69 202-270 13-81 (170)
140 1g25_A CDK-activating kinase a 99.4 7.2E-14 2.5E-18 90.2 3.8 55 206-260 2-61 (65)
141 3edt_B KLC 2, kinesin light ch 99.4 2.1E-12 7.1E-17 106.3 13.7 146 9-163 38-200 (283)
142 3mkr_A Coatomer subunit epsilo 99.4 3.7E-12 1.3E-16 107.2 15.0 102 13-114 129-232 (291)
143 3ro3_A PINS homolog, G-protein 99.4 6.7E-12 2.3E-16 94.4 15.0 143 9-161 4-158 (164)
144 2r5s_A Uncharacterized protein 99.4 2.9E-13 1E-17 105.0 7.5 137 11-164 3-140 (176)
145 3knv_A TNF receptor-associated 99.4 2.8E-14 9.6E-19 106.5 1.4 68 203-270 27-103 (141)
146 1qqe_A Vesicular transport pro 99.4 2.2E-12 7.7E-17 108.4 13.1 105 13-117 116-234 (292)
147 2kc7_A BFR218_protein; tetratr 99.4 9.8E-13 3.4E-17 91.7 9.2 92 18-117 4-96 (99)
148 3edt_B KLC 2, kinesin light ch 99.4 5.7E-12 1.9E-16 103.7 15.3 104 10-113 81-200 (283)
149 3k9i_A BH0479 protein; putativ 99.4 2.8E-12 9.6E-17 92.5 11.5 86 3-88 13-101 (117)
150 2ond_A Cleavage stimulation fa 99.4 4.6E-12 1.6E-16 107.2 14.5 144 2-161 86-232 (308)
151 4a1s_A PINS, partner of inscut 99.4 5.3E-11 1.8E-15 103.9 21.1 104 11-114 45-158 (411)
152 1wao_1 Serine/threonine protei 99.4 4.5E-13 1.6E-17 120.5 8.0 114 3-116 29-155 (477)
153 2vyi_A SGTA protein; chaperone 99.4 3.7E-12 1.3E-16 92.4 11.0 96 3-98 35-130 (131)
154 3upv_A Heat shock protein STI1 99.4 3.5E-12 1.2E-16 93.0 10.9 92 3-94 27-124 (126)
155 2lni_A Stress-induced-phosphop 99.4 3.8E-12 1.3E-16 92.9 11.0 95 3-97 39-133 (133)
156 3mkr_A Coatomer subunit epsilo 99.4 1.8E-11 6.3E-16 102.9 16.4 134 10-164 97-232 (291)
157 3gw4_A Uncharacterized protein 99.4 1.5E-11 5.1E-16 96.6 14.5 143 10-162 22-177 (203)
158 3sz7_A HSC70 cochaperone (SGT) 99.4 3.5E-12 1.2E-16 97.6 10.5 93 2-94 33-125 (164)
159 3ng2_A RNF4, snurf, ring finge 99.4 2.4E-13 8.3E-18 89.4 3.1 56 204-260 7-69 (71)
160 2ysj_A Tripartite motif-contai 99.4 7.2E-13 2.5E-17 84.9 5.1 48 201-248 14-63 (63)
161 3rkv_A Putative peptidylprolyl 99.4 5.7E-12 2E-16 96.2 11.0 89 10-98 59-148 (162)
162 3ma5_A Tetratricopeptide repea 99.3 6.5E-12 2.2E-16 88.1 10.1 72 43-114 2-73 (100)
163 2d8t_A Dactylidin, ring finger 99.3 2.3E-13 8E-18 89.4 2.4 52 203-255 11-62 (71)
164 4g1t_A Interferon-induced prot 99.3 2.2E-11 7.7E-16 108.3 15.7 108 10-117 47-173 (472)
165 3ro2_A PINS homolog, G-protein 99.3 2E-10 6.8E-15 96.5 20.7 106 12-117 3-118 (338)
166 3ulq_A Response regulator aspa 99.3 2E-11 6.8E-16 106.2 14.8 105 10-114 139-256 (383)
167 3nf1_A KLC 1, kinesin light ch 99.3 3.6E-11 1.2E-15 100.5 15.6 145 7-161 20-182 (311)
168 2fbn_A 70 kDa peptidylprolyl i 99.3 7E-12 2.4E-16 99.0 10.4 98 14-111 88-186 (198)
169 2ct2_A Tripartite motif protei 99.3 1.5E-12 5.2E-17 89.3 5.7 63 200-262 8-79 (88)
170 1zu2_A Mitochondrial import re 99.3 3.7E-12 1.3E-16 96.2 8.1 81 3-83 25-126 (158)
171 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 9.1E-12 3.1E-16 111.4 12.0 97 13-109 316-413 (457)
172 3sf4_A G-protein-signaling mod 99.3 2.5E-10 8.5E-15 99.0 20.6 104 12-115 7-120 (406)
173 3nf1_A KLC 1, kinesin light ch 99.3 6E-11 2.1E-15 99.1 16.0 145 9-162 64-225 (311)
174 4g1t_A Interferon-induced prot 99.3 6.8E-11 2.3E-15 105.2 16.9 112 3-114 236-366 (472)
175 4a1s_A PINS, partner of inscut 99.3 6.4E-11 2.2E-15 103.4 16.0 143 10-162 219-373 (411)
176 3ma5_A Tetratricopeptide repea 99.3 2.1E-11 7.4E-16 85.4 10.5 87 10-96 3-91 (100)
177 2if4_A ATFKBP42; FKBP-like, al 99.3 3.3E-12 1.1E-16 109.8 7.2 103 15-117 231-334 (338)
178 2qfc_A PLCR protein; TPR, HTH, 99.3 2.8E-10 9.4E-15 95.4 18.7 139 13-161 114-266 (293)
179 3ulq_A Response regulator aspa 99.3 9E-11 3.1E-15 102.0 16.2 135 17-161 106-253 (383)
180 1ihg_A Cyclophilin 40; ppiase 99.3 3.4E-11 1.2E-15 104.7 13.3 96 9-104 268-363 (370)
181 1hxi_A PEX5, peroxisome target 99.3 5.2E-11 1.8E-15 86.6 12.2 99 49-163 18-116 (121)
182 2ecj_A Tripartite motif-contai 99.3 3.1E-12 1.1E-16 80.5 4.8 48 201-248 9-58 (58)
183 2ifu_A Gamma-SNAP; membrane fu 99.3 3.4E-11 1.2E-15 101.8 12.8 141 11-163 73-225 (307)
184 2xeu_A Ring finger protein 4; 99.3 7.4E-13 2.5E-17 85.1 1.9 53 207-260 3-62 (64)
185 1na0_A Designed protein CTPR3; 99.3 4.5E-11 1.5E-15 85.8 11.6 94 3-96 32-125 (125)
186 3sf4_A G-protein-signaling mod 99.3 7.5E-11 2.6E-15 102.3 15.2 143 10-162 183-337 (406)
187 1dce_A Protein (RAB geranylger 99.3 5.8E-11 2E-15 108.8 14.8 155 3-164 52-224 (567)
188 2ect_A Ring finger protein 126 99.3 6.1E-12 2.1E-16 84.2 6.2 58 202-260 10-70 (78)
189 2kat_A Uncharacterized protein 99.3 3.4E-11 1.1E-15 86.4 10.5 95 2-96 7-103 (115)
190 2hr2_A Hypothetical protein; a 99.3 2E-10 6.9E-15 86.8 14.7 109 47-167 10-137 (159)
191 2ea6_A Ring finger protein 4; 99.3 2.4E-12 8.1E-17 84.0 3.5 53 201-254 9-68 (69)
192 3ro2_A PINS homolog, G-protein 99.3 1.4E-10 4.7E-15 97.5 15.1 142 10-161 179-332 (338)
193 1elw_A TPR1-domain of HOP; HOP 99.3 5.6E-11 1.9E-15 84.5 10.9 90 3-92 27-116 (118)
194 3q49_B STIP1 homology and U bo 99.3 9.9E-11 3.4E-15 86.1 12.4 107 42-164 3-109 (137)
195 1ouv_A Conserved hypothetical 99.3 1.8E-10 6.1E-15 95.2 15.2 98 10-111 2-107 (273)
196 3u3w_A Transcriptional activat 99.2 1.4E-10 4.9E-15 97.1 14.7 138 14-161 115-266 (293)
197 2c2l_A CHIP, carboxy terminus 99.2 1.7E-11 5.9E-16 102.5 8.7 110 3-114 27-167 (281)
198 3q15_A PSP28, response regulat 99.2 4.2E-10 1.4E-14 97.7 17.8 108 10-117 178-296 (378)
199 1e4u_A Transcriptional repress 99.2 1E-11 3.5E-16 82.6 5.4 55 203-257 7-65 (78)
200 3q15_A PSP28, response regulat 99.2 4.4E-10 1.5E-14 97.6 17.2 171 15-195 102-291 (378)
201 3dra_A Protein farnesyltransfe 99.2 1.8E-10 6.1E-15 97.3 14.1 152 3-164 56-218 (306)
202 3u3w_A Transcriptional activat 99.2 5.8E-11 2E-15 99.6 10.6 102 13-114 154-269 (293)
203 1bor_A Transcription factor PM 99.2 1E-11 3.6E-16 77.3 4.1 47 205-255 4-50 (56)
204 3ro3_A PINS homolog, G-protein 99.2 2.2E-10 7.7E-15 85.8 12.4 104 11-114 46-161 (164)
205 2qfc_A PLCR protein; TPR, HTH, 99.2 1.2E-09 4.1E-14 91.5 17.7 145 9-162 70-226 (293)
206 3dss_A Geranylgeranyl transfer 99.2 2.6E-09 8.9E-14 90.8 19.8 159 3-168 53-229 (331)
207 2ifu_A Gamma-SNAP; membrane fu 99.2 1E-10 3.5E-15 98.9 11.2 105 11-117 113-229 (307)
208 3bee_A Putative YFRE protein; 99.2 3.6E-10 1.2E-14 78.1 11.6 86 44-133 2-90 (93)
209 2dba_A Smooth muscle cell asso 99.2 1.7E-10 5.7E-15 85.7 10.7 92 3-94 51-145 (148)
210 3dss_A Geranylgeranyl transfer 99.2 7E-10 2.4E-14 94.3 15.6 156 2-164 96-270 (331)
211 2ooe_A Cleavage stimulation fa 99.2 5.8E-10 2E-14 101.3 15.7 113 2-114 260-388 (530)
212 1ouv_A Conserved hypothetical 99.2 1E-09 3.6E-14 90.6 15.6 98 11-112 35-144 (273)
213 2kck_A TPR repeat; tetratricop 99.2 4.9E-11 1.7E-15 84.0 6.5 72 43-114 1-72 (112)
214 1chc_A Equine herpes virus-1 r 99.2 2.5E-11 8.5E-16 78.9 4.3 48 206-254 4-52 (68)
215 2xev_A YBGF; tetratricopeptide 99.1 3.4E-10 1.2E-14 82.3 10.7 91 5-95 27-123 (129)
216 3gw4_A Uncharacterized protein 99.1 5.1E-10 1.7E-14 87.8 12.2 106 9-114 61-179 (203)
217 2l6j_A TPR repeat-containing p 99.1 6.8E-10 2.3E-14 78.3 11.4 69 47-115 3-71 (111)
218 2ecm_A Ring finger and CHY zin 99.1 3.7E-11 1.3E-15 74.5 4.1 47 206-253 4-54 (55)
219 1dce_A Protein (RAB geranylger 99.1 3.3E-10 1.1E-14 103.8 12.0 114 2-115 95-225 (567)
220 2ecn_A Ring finger protein 141 99.1 1.5E-11 5E-16 80.5 1.9 54 201-256 9-62 (70)
221 4f3v_A ESX-1 secretion system 99.1 4.7E-10 1.6E-14 93.0 11.3 106 8-114 130-240 (282)
222 2kiz_A E3 ubiquitin-protein li 99.1 6.7E-11 2.3E-15 77.0 5.0 53 202-255 9-64 (69)
223 4ap4_A E3 ubiquitin ligase RNF 99.1 1.7E-11 6E-16 90.7 2.3 55 205-260 5-66 (133)
224 3q7a_A Farnesyltransferase alp 99.1 7.1E-10 2.4E-14 94.8 12.3 112 3-114 77-199 (349)
225 1iym_A EL5; ring-H2 finger, ub 99.1 7.5E-11 2.6E-15 73.1 4.6 48 205-253 3-54 (55)
226 1na3_A Designed protein CTPR2; 99.1 2.9E-10 9.8E-15 77.3 8.0 69 46-114 7-75 (91)
227 1elr_A TPR2A-domain of HOP; HO 99.1 2.9E-10 1E-14 82.3 8.3 94 3-97 27-127 (131)
228 2l0b_A E3 ubiquitin-protein li 99.1 4E-11 1.4E-15 82.6 3.1 50 204-254 37-89 (91)
229 2ep4_A Ring finger protein 24; 99.1 1.1E-10 3.8E-15 77.1 5.1 54 201-255 9-65 (74)
230 2ooe_A Cleavage stimulation fa 99.1 1.2E-09 4.2E-14 99.1 13.7 144 2-161 308-454 (530)
231 3dra_A Protein farnesyltransfe 99.1 9E-10 3.1E-14 93.0 11.5 113 3-115 92-219 (306)
232 1x4j_A Ring finger protein 38; 99.1 1.1E-10 3.7E-15 77.4 4.2 49 205-254 21-72 (75)
233 3n71_A Histone lysine methyltr 99.0 4.8E-09 1.6E-13 94.2 15.7 99 14-112 309-423 (490)
234 3rjv_A Putative SEL1 repeat pr 99.0 2.2E-09 7.6E-14 85.7 12.2 97 12-113 16-120 (212)
235 2y1n_A E3 ubiquitin-protein li 99.0 8.3E-11 2.8E-15 100.7 2.9 49 208-256 333-381 (389)
236 4f3v_A ESX-1 secretion system 99.0 1.3E-09 4.4E-14 90.4 9.7 137 14-164 102-240 (282)
237 2v5f_A Prolyl 4-hydroxylase su 99.0 5.3E-09 1.8E-13 73.7 11.3 76 14-89 5-87 (104)
238 1v87_A Deltex protein 2; ring- 99.0 2.5E-10 8.6E-15 82.1 4.2 49 206-254 24-94 (114)
239 4ic3_A E3 ubiquitin-protein li 99.0 1.6E-10 5.3E-15 76.3 2.3 43 207-254 24-67 (74)
240 2kc7_A BFR218_protein; tetratr 99.0 4.5E-09 1.6E-13 72.7 9.3 64 52-115 4-68 (99)
241 1hz4_A MALT regulatory protein 99.0 1.8E-08 6.1E-13 86.9 15.1 138 13-161 52-203 (373)
242 3rjv_A Putative SEL1 repeat pr 98.9 1E-08 3.4E-13 81.8 12.4 97 12-111 48-158 (212)
243 3q7a_A Farnesyltransferase alp 98.9 3.1E-09 1.1E-13 90.9 9.8 113 2-114 111-240 (349)
244 4ap4_A E3 ubiquitin ligase RNF 98.9 2.9E-10 9.9E-15 84.0 1.4 55 205-260 70-131 (133)
245 1pc2_A Mitochondria fission pr 98.9 1.4E-08 4.8E-13 75.8 10.2 86 29-114 13-103 (152)
246 1hz4_A MALT regulatory protein 98.9 9.3E-08 3.2E-12 82.3 16.6 143 11-162 11-165 (373)
247 1klx_A Cysteine rich protein B 98.9 2.7E-08 9.2E-13 73.8 11.4 88 20-111 31-126 (138)
248 3qww_A SET and MYND domain-con 98.9 1.2E-08 4.2E-13 90.1 11.0 96 17-112 301-412 (433)
249 2ecg_A Baculoviral IAP repeat- 98.9 9.6E-10 3.3E-14 72.7 2.8 43 207-254 25-68 (75)
250 3qwp_A SET and MYND domain-con 98.9 2.9E-08 9.9E-13 87.8 13.2 100 13-112 286-401 (429)
251 3bee_A Putative YFRE protein; 98.8 1.8E-08 6.2E-13 69.4 8.9 74 10-83 2-78 (93)
252 1wim_A KIAA0161 protein; ring 98.8 8.3E-10 2.8E-14 76.4 1.0 65 206-271 4-82 (94)
253 2ecl_A Ring-box protein 2; RNF 98.8 2.1E-09 7E-14 72.2 2.7 49 206-255 14-77 (81)
254 3n71_A Histone lysine methyltr 98.8 3.7E-08 1.3E-12 88.5 11.1 104 9-112 346-465 (490)
255 2vje_A E3 ubiquitin-protein li 98.7 3.9E-09 1.3E-13 67.3 2.3 47 206-253 7-56 (64)
256 3u64_A Protein TP_0956; tetrat 98.7 1.5E-07 5.1E-12 77.6 12.1 107 9-115 147-273 (301)
257 2vje_B MDM4 protein; proto-onc 98.7 5.1E-09 1.7E-13 66.5 2.2 48 206-254 6-56 (63)
258 3ly7_A Transcriptional activat 98.7 1E-07 3.6E-12 81.5 10.9 112 2-114 221-342 (372)
259 1pc2_A Mitochondria fission pr 98.7 6.8E-08 2.3E-12 72.1 8.3 82 10-91 28-114 (152)
260 3mv2_B Coatomer subunit epsilo 98.7 6.6E-07 2.3E-11 75.1 15.2 132 14-162 100-241 (310)
261 3t6p_A Baculoviral IAP repeat- 98.7 7.3E-09 2.5E-13 88.2 3.0 44 206-254 294-338 (345)
262 2yho_A E3 ubiquitin-protein li 98.7 6.9E-09 2.4E-13 69.1 2.0 43 207-254 18-61 (79)
263 3dpl_R Ring-box protein 1; ubi 98.6 1.7E-08 6E-13 70.9 3.5 46 207-253 37-100 (106)
264 2xm6_A Protein corresponding t 98.6 7.4E-07 2.5E-11 79.9 14.7 97 11-111 36-144 (490)
265 2ea5_A Cell growth regulator w 98.6 5.3E-08 1.8E-12 62.7 5.2 45 205-254 13-58 (68)
266 3e4b_A ALGK; tetratricopeptide 98.6 2.4E-07 8.1E-12 82.5 11.3 95 14-111 176-280 (452)
267 2v5f_A Prolyl 4-hydroxylase su 98.6 3.6E-07 1.2E-11 64.1 9.5 68 47-114 4-78 (104)
268 2xm6_A Protein corresponding t 98.6 6.1E-07 2.1E-11 80.5 13.3 95 13-111 290-396 (490)
269 3ly7_A Transcriptional activat 98.6 1.5E-06 5E-11 74.4 14.1 135 13-164 195-342 (372)
270 1xi4_A Clathrin heavy chain; a 98.5 1.8E-06 6E-11 84.9 15.2 92 12-108 1103-1221(1630)
271 3e4b_A ALGK; tetratricopeptide 98.5 5E-07 1.7E-11 80.4 9.9 94 10-109 209-314 (452)
272 4b4t_Q 26S proteasome regulato 98.5 2.4E-06 8.1E-11 74.8 14.0 141 11-161 52-204 (434)
273 4b4t_Q 26S proteasome regulato 98.4 3.1E-06 1.1E-10 74.1 13.6 104 14-117 95-210 (434)
274 1klx_A Cysteine rich protein B 98.4 1.8E-06 6E-11 63.8 10.1 78 28-111 9-90 (138)
275 1b89_A Protein (clathrin heavy 98.4 3.1E-07 1.1E-11 80.6 5.6 79 15-106 123-201 (449)
276 4a0k_B E3 ubiquitin-protein li 98.4 4.1E-08 1.4E-12 70.0 0.0 46 208-254 49-112 (117)
277 3mv2_B Coatomer subunit epsilo 98.4 2.3E-06 7.9E-11 71.8 10.6 97 13-114 175-285 (310)
278 2d8s_A Cellular modulator of i 98.4 5.5E-07 1.9E-11 59.8 5.4 50 206-255 14-71 (80)
279 3u64_A Protein TP_0956; tetrat 98.3 1.4E-05 4.9E-10 65.8 13.1 139 11-164 103-272 (301)
280 1nzn_A CGI-135 protein, fissio 98.3 6.8E-06 2.3E-10 59.1 9.8 90 26-115 13-107 (126)
281 1xi4_A Clathrin heavy chain; a 98.2 2E-05 6.9E-10 77.6 14.5 92 15-114 1196-1312(1630)
282 3qwp_A SET and MYND domain-con 98.2 6.3E-06 2.1E-10 72.8 9.2 86 9-94 324-425 (429)
283 3ffl_A Anaphase-promoting comp 98.2 1.8E-05 6.2E-10 59.4 10.1 96 12-107 18-147 (167)
284 3qww_A SET and MYND domain-con 98.2 5.5E-06 1.9E-10 73.2 8.5 75 9-83 335-422 (433)
285 4e6h_A MRNA 3'-END-processing 98.0 6.5E-05 2.2E-09 70.0 13.4 109 3-111 332-463 (679)
286 1nzn_A CGI-135 protein, fissio 98.0 2.6E-05 9E-10 56.0 7.7 80 12-91 33-117 (126)
287 1b89_A Protein (clathrin heavy 98.0 0.0001 3.5E-09 64.7 12.4 92 14-114 148-239 (449)
288 4e6h_A MRNA 3'-END-processing 97.8 0.0005 1.7E-08 64.1 14.3 113 2-114 366-502 (679)
289 3vk6_A E3 ubiquitin-protein li 97.8 1.6E-05 5.3E-10 53.8 3.0 46 209-254 3-49 (101)
290 3o48_A Mitochondria fission 1 97.7 0.00057 2E-08 49.3 10.8 70 48-117 40-113 (134)
291 1y8m_A FIS1; mitochondria, unk 97.6 0.00093 3.2E-08 48.8 11.2 71 47-117 38-112 (144)
292 4h7y_A Dual specificity protei 97.6 0.0005 1.7E-08 50.7 9.8 104 10-114 9-126 (161)
293 3o48_A Mitochondria fission 1 97.5 0.00071 2.4E-08 48.8 9.0 79 13-91 39-121 (134)
294 2ct0_A Non-SMC element 1 homol 97.5 0.00014 4.9E-09 47.0 4.5 48 207-254 15-64 (74)
295 3ffl_A Anaphase-promoting comp 97.4 0.00094 3.2E-08 50.1 9.2 82 10-92 59-165 (167)
296 1y8m_A FIS1; mitochondria, unk 97.4 0.0039 1.3E-07 45.5 11.5 78 13-90 38-119 (144)
297 3k1l_B Fancl; UBC, ring, RWD, 97.3 5.7E-05 1.9E-09 63.1 1.2 48 207-254 308-373 (381)
298 2ff4_A Probable regulatory pro 97.3 0.0099 3.4E-07 51.5 15.0 102 10-111 111-234 (388)
299 1zbp_A Hypothetical protein VP 97.2 0.0099 3.4E-07 48.3 13.1 63 22-84 5-67 (273)
300 1vyx_A ORF K3, K3RING; zinc-bi 97.1 0.00059 2E-08 42.3 4.2 48 207-254 6-59 (60)
301 2uy1_A Cleavage stimulation fa 97.0 0.016 5.5E-07 51.9 14.4 51 3-54 202-252 (493)
302 4gns_B Protein CSD3, chitin bi 97.0 0.0045 1.5E-07 58.0 10.5 80 29-108 300-397 (754)
303 4g26_A Pentatricopeptide repea 96.8 0.017 5.9E-07 51.8 12.6 84 29-112 85-170 (501)
304 4gns_B Protein CSD3, chitin bi 96.7 0.0075 2.6E-07 56.5 9.5 62 13-74 336-397 (754)
305 3i2d_A E3 SUMO-protein ligase 96.5 0.0019 6.6E-08 54.7 4.2 64 206-269 248-315 (371)
306 3kae_A CDC27, possible protein 96.5 0.079 2.7E-06 39.9 12.0 98 12-114 31-146 (242)
307 4g26_A Pentatricopeptide repea 96.4 0.071 2.4E-06 47.8 14.2 99 14-112 105-205 (501)
308 4fo9_A E3 SUMO-protein ligase 96.1 0.0042 1.4E-07 52.5 4.2 65 205-269 213-281 (360)
309 2jun_A Midline-1; B-BOX, TRIM, 96.0 0.0026 8.8E-08 43.9 1.8 31 207-237 3-36 (101)
310 1ya0_A SMG-7 transcript varian 96.0 0.075 2.6E-06 47.5 11.6 80 15-94 153-232 (497)
311 2uy1_A Cleavage stimulation fa 95.9 0.087 3E-06 47.1 11.9 95 13-108 285-380 (493)
312 3txn_A 26S proteasome regulato 95.6 0.15 5.1E-06 44.1 11.8 94 18-111 103-210 (394)
313 4b4t_R RPN7, 26S proteasome re 95.5 0.062 2.1E-06 47.2 9.1 98 14-111 131-237 (429)
314 1zbp_A Hypothetical protein VP 95.4 0.099 3.4E-06 42.4 9.3 58 57-114 6-63 (273)
315 4h7y_A Dual specificity protei 95.3 0.12 4.3E-06 38.0 8.5 106 41-163 6-125 (161)
316 4b4t_P 26S proteasome regulato 94.8 0.76 2.6E-05 40.4 14.0 101 11-111 134-247 (445)
317 3mkq_B Coatomer subunit alpha; 94.4 0.51 1.7E-05 35.8 10.3 25 15-39 35-59 (177)
318 1ya0_A SMG-7 transcript varian 94.4 0.18 6.1E-06 45.0 9.1 62 50-111 154-215 (497)
319 2ff4_A Probable regulatory pro 94.3 0.31 1E-05 42.1 10.2 65 12-76 169-233 (388)
320 3mkq_A Coatomer beta'-subunit; 92.9 0.6 2.1E-05 43.7 10.5 81 21-106 659-747 (814)
321 3nw0_A Non-structural maintena 92.8 0.11 3.9E-06 41.5 4.4 49 207-255 180-230 (238)
322 4b4t_S RPN3, 26S proteasome re 92.8 0.26 9E-06 43.9 7.1 80 47-126 230-314 (523)
323 3txn_A 26S proteasome regulato 92.1 4 0.00014 35.1 13.6 99 13-111 18-168 (394)
324 3spa_A Mtrpol, DNA-directed RN 92.1 3.3 0.00011 40.3 13.9 97 15-111 128-230 (1134)
325 2kkx_A Uncharacterized protein 91.6 0.33 1.1E-05 32.6 4.8 50 205-255 25-80 (102)
326 3mv2_A Coatomer subunit alpha; 91.5 5.4 0.00019 33.2 13.9 60 85-144 117-177 (325)
327 4fhn_B Nucleoporin NUP120; pro 90.9 0.61 2.1E-05 46.2 8.2 91 16-106 844-962 (1139)
328 3mkq_A Coatomer beta'-subunit; 90.7 2.8 9.4E-05 39.2 12.2 75 18-108 633-707 (814)
329 1qsa_A Protein (soluble lytic 90.3 1.6 5.4E-05 40.1 9.8 91 19-110 257-347 (618)
330 1wfd_A Hypothetical protein 15 88.8 1.1 3.8E-05 30.0 5.7 11 101-111 41-51 (93)
331 3mkq_B Coatomer subunit alpha; 88.6 4.2 0.00014 30.7 9.4 48 22-74 13-60 (177)
332 3pwf_A Rubrerythrin; non heme 87.2 7.7 0.00026 29.0 14.9 15 204-218 135-149 (170)
333 2crb_A Nuclear receptor bindin 86.5 1.7 5.9E-05 28.7 5.3 34 9-42 10-43 (97)
334 3spa_A Mtrpol, DNA-directed RN 86.4 21 0.00072 34.9 14.7 65 48-112 127-195 (1134)
335 2wpv_A GET4, UPF0363 protein Y 85.7 13 0.00046 30.7 11.8 94 13-106 32-158 (312)
336 2w2u_A Hypothetical P60 katani 85.5 1.6 5.5E-05 28.5 4.9 16 99-114 43-58 (83)
337 1wy6_A Hypothetical protein ST 85.4 5.2 0.00018 29.0 7.8 92 15-111 60-154 (172)
338 2ko5_A Ring finger protein Z; 85.4 0.48 1.6E-05 31.5 2.2 47 207-255 28-74 (99)
339 3kae_A CDC27, possible protein 85.0 11 0.00036 28.5 13.4 70 14-83 62-149 (242)
340 4b4t_R RPN7, 26S proteasome re 84.9 5.8 0.0002 34.5 9.7 68 47-114 130-200 (429)
341 4a5x_A MITD1, MIT domain-conta 84.5 2.2 7.7E-05 28.0 5.3 32 11-42 13-44 (86)
342 2w2u_A Hypothetical P60 katani 84.3 2.1 7E-05 28.0 5.0 31 12-42 17-47 (83)
343 4b4t_S RPN3, 26S proteasome re 84.3 3 0.0001 37.2 7.6 70 11-82 228-304 (523)
344 3lpz_A GET4 (YOR164C homolog); 83.6 19 0.00063 30.2 12.3 95 12-106 33-160 (336)
345 2v6y_A AAA family ATPase, P60 83.5 1.9 6.6E-05 28.1 4.6 16 99-114 35-50 (83)
346 3ax2_A Mitochondrial import re 83.4 2 6.7E-05 27.3 4.4 32 86-117 21-52 (73)
347 2v6y_A AAA family ATPase, P60 82.7 2.6 8.8E-05 27.5 5.0 31 12-42 9-39 (83)
348 1m3v_A FLIN4, fusion of the LI 82.1 0.73 2.5E-05 32.5 2.3 49 206-255 31-82 (122)
349 2v6x_A Vacuolar protein sortin 81.9 8.3 0.00029 25.0 7.7 9 66-74 12-20 (85)
350 2jne_A Hypothetical protein YF 81.6 0.27 9.3E-06 32.8 -0.1 41 207-253 32-72 (101)
351 4gq2_M Nucleoporin NUP120; bet 81.3 23 0.00077 34.3 13.1 90 19-112 815-927 (950)
352 3mkr_B Coatomer subunit alpha; 80.9 23 0.00078 29.4 16.0 61 84-144 104-165 (320)
353 1lko_A Rubrerythrin all-iron(I 80.7 17 0.00057 27.7 10.5 8 244-251 173-180 (191)
354 2ijq_A Hypothetical protein; s 80.2 16 0.00054 27.1 9.3 29 17-45 35-63 (161)
355 1weo_A Cellulose synthase, cat 79.4 6.3 0.00022 25.8 5.7 49 206-254 15-70 (93)
356 3ax2_A Mitochondrial import re 78.2 6.6 0.00023 24.8 5.5 32 18-49 21-52 (73)
357 1om2_A Protein (mitochondrial 78.0 6.9 0.00024 26.1 5.8 29 86-114 24-52 (95)
358 2dl1_A Spartin; SPG20, MIT, st 77.4 13 0.00046 25.7 7.3 43 63-113 18-60 (116)
359 2v6x_A Vacuolar protein sortin 77.2 4.8 0.00016 26.2 5.0 30 13-42 12-41 (85)
360 2cfu_A SDSA1; SDS-hydrolase, l 77.2 5.7 0.00019 36.7 7.2 51 48-98 449-499 (658)
361 1wfd_A Hypothetical protein 15 76.6 5 0.00017 26.7 5.0 30 13-42 14-43 (93)
362 1wy6_A Hypothetical protein ST 76.5 19 0.00065 26.1 8.1 62 18-79 94-156 (172)
363 3mjh_B Early endosome antigen 76.3 0.63 2.2E-05 24.7 0.3 15 207-221 5-19 (34)
364 2k5c_A Uncharacterized protein 76.2 1.5 5.3E-05 28.0 2.1 18 244-261 53-70 (95)
365 2vkj_A TM1634; membrane protei 75.2 15 0.0005 24.1 7.6 36 11-46 50-85 (106)
366 4fhn_B Nucleoporin NUP120; pro 75.0 35 0.0012 33.7 12.5 91 19-113 817-930 (1139)
367 3t5v_B Nuclear mRNA export pro 74.8 5.1 0.00017 35.2 5.9 87 29-115 141-254 (455)
368 2rpa_A Katanin P60 ATPase-cont 74.8 13 0.00044 23.8 6.3 27 85-111 15-41 (78)
369 2cpt_A SKD1 protein, vacuolar 74.8 5.1 0.00017 28.0 4.8 16 61-76 31-46 (117)
370 2xqn_T Testin, TESS; metal-bin 74.5 2 6.9E-05 30.2 2.7 48 205-255 28-76 (126)
371 2xjy_A Rhombotin-2; oncoprotei 74.4 1.9 6.5E-05 30.6 2.6 49 205-254 27-78 (131)
372 3t5x_A PCI domain-containing p 74.0 13 0.00043 28.7 7.4 39 10-48 10-48 (203)
373 2cs3_A Protein C14ORF4, MY039 73.3 6.7 0.00023 25.1 4.5 35 206-240 14-52 (93)
374 2jrp_A Putative cytoplasmic pr 71.5 0.94 3.2E-05 29.3 0.3 40 208-253 3-42 (81)
375 4gq2_M Nucleoporin NUP120; bet 69.2 14 0.00048 35.7 8.1 68 15-82 841-932 (950)
376 2rgt_A Fusion of LIM/homeobox 68.5 5.3 0.00018 29.7 4.0 47 205-254 31-77 (169)
377 3t5x_A PCI domain-containing p 67.9 15 0.00052 28.2 6.6 37 48-84 14-50 (203)
378 4a5x_A MITD1, MIT domain-conta 67.4 23 0.00078 23.0 7.5 19 93-111 27-45 (86)
379 2cfu_A SDSA1; SDS-hydrolase, l 67.2 12 0.00041 34.5 6.9 48 83-130 450-497 (658)
380 2jtn_A LIM domain-binding prot 67.1 4.9 0.00017 30.3 3.6 48 205-255 85-132 (182)
381 2o35_A Hypothetical protein DU 66.5 1.6 5.3E-05 29.2 0.5 13 228-240 42-54 (105)
382 3fyb_A Protein of unknown func 66.3 1.6 5.4E-05 29.1 0.5 13 228-240 41-53 (104)
383 2rpa_A Katanin P60 ATPase-cont 65.5 5.2 0.00018 25.7 2.9 27 17-43 15-41 (78)
384 1om2_A Protein (mitochondrial 65.3 10 0.00035 25.3 4.4 29 18-46 24-52 (95)
385 1rut_X Flinc4, fusion protein 64.9 1.6 5.4E-05 33.3 0.4 49 205-254 30-81 (188)
386 4b4t_P 26S proteasome regulato 62.9 76 0.0026 27.5 11.7 63 48-110 137-205 (445)
387 2br9_A 14-3-3E, 14-3-3 protein 60.9 59 0.002 25.6 8.9 16 95-110 186-201 (234)
388 2crb_A Nuclear receptor bindin 60.6 33 0.0011 22.6 8.4 30 82-111 15-44 (97)
389 2gmg_A Hypothetical protein PF 60.3 3.3 0.00011 28.2 1.3 29 217-251 65-93 (105)
390 2jvx_A NF-kappa-B essential mo 59.2 3 0.0001 21.0 0.7 15 206-220 2-16 (28)
391 2cup_A Skeletal muscle LIM-pro 59.0 5.8 0.0002 26.5 2.4 48 205-255 31-79 (101)
392 2npm_A 14-3-3 domain containin 58.5 66 0.0023 25.8 8.8 16 95-110 211-226 (260)
393 4gzn_C ZFP-57, zinc finger pro 58.4 4 0.00014 24.5 1.3 37 207-254 4-44 (60)
394 3ubw_A 14-3-3E, 14-3-3 protein 57.8 72 0.0025 25.6 8.9 16 95-110 212-227 (261)
395 1yuz_A Nigerythrin; rubrythrin 57.5 62 0.0021 24.7 14.8 14 205-218 169-182 (202)
396 1iml_A CRIP, cysteine rich int 57.0 13 0.00045 23.1 3.8 46 205-253 25-72 (76)
397 2cwy_A Hypothetical protein TT 56.8 39 0.0013 22.3 6.2 23 20-42 7-29 (94)
398 4ayb_P DNA-directed RNA polyme 55.7 4.6 0.00016 22.9 1.1 27 223-252 7-33 (48)
399 2ymb_A MITD1, MIT domain-conta 55.2 2.5 8.5E-05 33.9 0.0 62 64-133 20-81 (257)
400 2eps_A POZ-, at HOOK-, and zin 55.2 12 0.0004 21.2 3.1 38 206-254 11-53 (54)
401 1o9d_A 14-3-3-like protein C; 54.9 80 0.0028 25.3 8.9 17 95-111 191-207 (260)
402 3uzd_A 14-3-3 protein gamma; s 54.6 79 0.0027 25.1 8.9 16 95-110 187-202 (248)
403 1l8d_A DNA double-strand break 54.6 3.4 0.00012 28.5 0.6 11 244-254 49-59 (112)
404 2adr_A ADR1; transcription reg 54.6 7.8 0.00027 22.4 2.3 36 208-254 3-42 (60)
405 1qsa_A Protein (soluble lytic 54.4 30 0.001 31.7 7.0 54 23-76 294-347 (618)
406 3lew_A SUSD-like carbohydrate 54.2 31 0.0011 30.4 7.0 48 64-111 174-232 (495)
407 2fiy_A Protein FDHE homolog; F 54.1 2.9 9.9E-05 34.7 0.2 45 206-251 181-231 (309)
408 3kez_A Putative sugar binding 54.0 32 0.0011 30.0 7.0 48 64-111 170-225 (461)
409 3uk3_C Zinc finger protein 217 53.1 6.2 0.00021 22.5 1.6 37 207-254 4-44 (57)
410 3myv_A SUSD superfamily protei 53.0 34 0.0012 29.7 7.0 48 64-111 164-219 (454)
411 1bbo_A Human enhancer-binding 51.8 7.5 0.00026 22.2 1.8 36 208-254 2-41 (57)
412 2lv2_A Insulinoma-associated p 51.7 9.1 0.00031 24.8 2.3 38 206-254 27-68 (85)
413 2lcq_A Putative toxin VAPC6; P 49.4 5.8 0.0002 29.4 1.2 10 244-253 150-159 (165)
414 1zbd_B Rabphilin-3A; G protein 48.9 63 0.0021 22.9 6.6 28 206-233 54-86 (134)
415 2yhe_A SEC-alkyl sulfatase; hy 54.3 3.7 0.00013 38.1 0.0 49 53-101 466-514 (668)
416 1e8j_A Rubredoxin; iron-sulfur 48.0 11 0.00037 22.0 2.0 16 200-215 29-44 (52)
417 2epr_A POZ-, at HOOK-, and zin 48.0 27 0.00094 18.9 3.9 35 205-250 10-48 (48)
418 3mcx_A SUSD superfamily protei 47.6 42 0.0014 29.4 6.7 49 64-112 176-232 (477)
419 1wig_A KIAA1808 protein; LIM d 47.4 10 0.00034 23.6 2.0 35 205-239 29-65 (73)
420 3myv_A SUSD superfamily protei 46.5 56 0.0019 28.4 7.3 47 31-77 165-219 (454)
421 2wbt_A B-129; zinc finger; 2.7 46.4 12 0.00042 25.8 2.5 37 207-254 74-112 (129)
422 2cpt_A SKD1 protein, vacuolar 45.9 71 0.0024 22.0 7.8 33 64-111 15-47 (117)
423 2epq_A POZ-, at HOOK-, and zin 45.8 14 0.0005 19.7 2.3 32 207-249 10-45 (45)
424 3t5v_B Nuclear mRNA export pro 44.9 76 0.0026 27.7 7.8 63 19-81 181-254 (455)
425 2ijq_A Hypothetical protein; s 44.6 91 0.0031 22.9 8.3 59 53-111 37-104 (161)
426 3kez_A Putative sugar binding 44.3 63 0.0022 28.1 7.3 47 31-77 171-225 (461)
427 1b8t_A Protein (CRP1); LIM dom 44.1 14 0.00046 28.1 2.6 35 205-239 32-67 (192)
428 3lew_A SUSD-like carbohydrate 43.9 62 0.0021 28.5 7.2 30 48-77 203-232 (495)
429 2kn9_A Rubredoxin; metalloprot 43.6 12 0.00043 24.1 1.9 15 201-215 54-68 (81)
430 2lce_A B-cell lymphoma 6 prote 43.6 16 0.00055 22.2 2.5 38 206-254 16-57 (74)
431 3mv2_A Coatomer subunit alpha; 43.5 1.4E+02 0.0048 24.7 10.5 100 15-114 115-239 (325)
432 1x6e_A Zinc finger protein 24; 43.1 9.9 0.00034 23.1 1.4 38 206-254 13-54 (72)
433 2ee8_A Protein ODD-skipped-rel 43.0 35 0.0012 22.2 4.4 52 203-254 13-85 (106)
434 1x5w_A Zinc finger protein 64, 42.8 12 0.00042 22.4 1.9 38 206-254 8-49 (70)
435 2o8p_A 14-3-3 domain containin 42.7 1.2E+02 0.0041 23.7 10.7 64 13-76 119-196 (227)
436 2ctd_A Zinc finger protein 512 42.3 19 0.00065 23.6 2.8 37 207-254 34-74 (96)
437 6rxn_A Rubredoxin; electron tr 42.1 8.6 0.00029 21.8 0.9 14 202-215 25-38 (46)
438 2l4z_A DNA endonuclease RBBP8, 41.9 16 0.00055 25.5 2.5 38 207-253 61-99 (123)
439 3mcx_A SUSD superfamily protei 41.8 68 0.0023 28.0 7.2 47 31-77 177-231 (477)
440 4rxn_A Rubredoxin; electron tr 41.7 9.4 0.00032 22.5 1.0 15 201-215 30-44 (54)
441 3snx_A SUSD homolog, putative 41.3 43 0.0015 29.2 5.7 48 64-111 160-220 (460)
442 2cot_A Zinc finger protein 435 41.1 18 0.00061 22.2 2.5 38 206-254 17-58 (77)
443 3iqu_A 14-3-3 protein sigma; s 40.8 1.3E+02 0.0045 23.6 9.0 16 95-110 189-204 (236)
444 2ct1_A Transcriptional repress 40.7 9.8 0.00034 23.4 1.1 38 206-254 14-57 (77)
445 3hdx_A SUSD homolog, SUSD supe 39.9 66 0.0022 28.1 6.7 48 64-111 156-226 (478)
446 2drp_A Protein (tramtrack DNA- 39.8 10 0.00036 22.4 1.1 37 207-254 10-52 (66)
447 2dj7_A Actin-binding LIM prote 39.3 17 0.00059 23.0 2.2 10 207-216 15-24 (80)
448 1x61_A Thyroid receptor intera 38.6 30 0.001 21.0 3.2 34 206-239 32-66 (72)
449 2zet_C Melanophilin; complex, 38.5 1.1E+02 0.0038 22.2 6.7 29 206-234 67-100 (153)
450 4b4t_O 26S proteasome regulato 38.5 1.8E+02 0.0062 24.6 11.9 90 22-111 84-198 (393)
451 2cor_A Pinch protein; LIM doma 38.3 15 0.0005 23.2 1.7 32 205-236 39-70 (79)
452 2d8z_A Four and A half LIM dom 38.3 23 0.00078 21.5 2.6 34 205-238 29-63 (70)
453 2d8x_A Protein pinch; LIM doma 38.2 20 0.00069 21.7 2.3 33 206-238 30-63 (70)
454 3fau_A NEDD4-binding protein 2 38.1 18 0.00062 23.1 2.1 16 263-278 54-69 (82)
455 2e2a_A Protein (enzyme IIA); h 37.8 63 0.0022 21.9 4.9 29 12-40 18-46 (105)
456 1nyp_A Pinch protein; LIM doma 37.8 16 0.00054 22.0 1.7 24 210-233 8-31 (66)
457 1wcr_A PTS system, N, N'-diace 37.3 66 0.0022 21.7 4.9 29 12-40 16-44 (103)
458 2gqj_A Zinc finger protein KIA 37.2 11 0.00039 24.6 1.1 38 206-254 23-66 (98)
459 1yk4_A Rubredoxin, RD; electro 37.0 12 0.00042 21.8 1.0 15 201-215 29-43 (52)
460 2dar_A PDZ and LIM domain prot 36.7 24 0.00084 22.7 2.7 25 209-233 27-51 (90)
461 2v3b_B Rubredoxin 2, rubredoxi 36.6 12 0.00042 22.1 1.0 15 201-215 30-44 (55)
462 2dl1_A Spartin; SPG20, MIT, st 36.5 72 0.0025 22.0 5.0 16 29-44 18-33 (116)
463 2yhe_A SEC-alkyl sulfatase; hy 42.7 7.4 0.00025 36.0 0.0 46 85-130 464-509 (668)
464 2d9h_A Zinc finger protein 692 36.3 14 0.00048 22.7 1.4 37 207-254 7-50 (78)
465 2kdx_A HYPA, hydrogenase/ureas 36.0 19 0.00064 25.0 2.1 8 244-251 92-99 (119)
466 1vd4_A Transcription initiatio 35.4 2.6 8.7E-05 25.3 -2.3 39 206-255 13-52 (62)
467 3qnk_A Putative lipoprotein; a 35.3 81 0.0028 27.9 6.6 48 64-111 153-211 (517)
468 2cur_A Skeletal muscle LIM-pro 35.1 28 0.00097 21.0 2.6 33 206-238 30-63 (69)
469 3eab_A Spastin; spastin, MIT, 34.3 97 0.0033 20.2 5.8 45 62-111 11-55 (89)
470 1x4l_A Skeletal muscle LIM-pro 34.1 27 0.00091 21.3 2.4 32 205-236 33-65 (72)
471 3jq1_A SUSD superfamily protei 33.9 43 0.0015 29.4 4.5 47 64-110 154-208 (481)
472 1j2o_A FLIN2, fusion of rhombo 33.6 36 0.0012 23.1 3.2 36 205-240 28-66 (114)
473 1dx8_A Rubredoxin; electron tr 33.4 15 0.00052 22.9 1.1 14 202-215 35-48 (70)
474 2dmd_A Zinc finger protein 64, 33.4 27 0.00093 22.2 2.5 13 207-219 8-20 (96)
475 3k1s_A PTS system, cellobiose- 33.0 83 0.0028 21.4 4.9 29 12-40 20-48 (109)
476 3dza_A Uncharacterized putativ 31.9 1.3E+02 0.0044 22.8 6.1 61 15-75 109-177 (191)
477 1x6a_A LIMK-2, LIM domain kina 31.6 45 0.0016 20.8 3.3 33 206-238 40-75 (81)
478 2ely_A Zinc finger protein 224 31.5 43 0.0015 17.7 2.8 13 207-219 12-24 (46)
479 2wpv_A GET4, UPF0363 protein Y 31.5 2.2E+02 0.0074 23.4 10.0 21 91-111 197-217 (312)
480 2yt9_A Zinc finger-containing 30.8 28 0.00095 22.1 2.2 49 206-254 6-77 (95)
481 1x64_A Alpha-actinin-2 associa 30.7 23 0.00079 22.8 1.7 40 206-254 24-63 (89)
482 3l8r_A PTCA, putative PTS syst 30.7 94 0.0032 21.6 4.9 17 58-74 47-63 (120)
483 2em0_A Zinc finger protein 224 30.6 55 0.0019 17.2 3.2 13 207-219 12-24 (46)
484 1llm_C Chimera of ZIF23-GCN4; 30.6 19 0.00064 22.8 1.2 37 207-254 3-43 (88)
485 2oo2_A Hypothetical protein AF 30.5 83 0.0028 20.4 4.3 24 13-36 34-57 (86)
486 2eov_A Zinc finger protein 484 30.4 42 0.0014 17.6 2.7 13 207-219 12-24 (46)
487 2l3k_A Rhombotin-2, linker, LI 30.4 39 0.0013 23.3 3.0 35 205-239 34-70 (123)
488 3i4g_A SUSD-like carbohydrate 30.2 1.1E+02 0.0039 27.1 6.7 48 64-111 167-227 (528)
489 1s24_A Rubredoxin 2; electron 30.1 19 0.00064 23.6 1.1 14 202-215 63-76 (87)
490 2ctu_A Zinc finger protein 483 30.0 10 0.00036 22.7 -0.1 35 206-254 17-51 (73)
491 3re2_A Predicted protein; meni 30.0 1.3E+02 0.0044 25.6 6.3 42 33-74 276-322 (472)
492 3hdx_A SUSD homolog, SUSD supe 29.9 1.3E+02 0.0045 26.2 7.0 30 48-77 197-226 (478)
493 2elz_A Zinc finger protein 224 29.5 56 0.0019 17.2 3.1 13 207-219 12-24 (46)
494 3bu8_A Telomeric repeat-bindin 29.5 52 0.0018 25.6 3.6 39 58-96 124-162 (235)
495 3bqo_A Telomeric repeat-bindin 29.4 42 0.0014 25.7 3.1 28 22-49 125-152 (211)
496 2g0u_A Type III secretion syst 29.3 1.2E+02 0.004 20.0 4.8 33 63-98 31-63 (92)
497 1yc5_A NAD-dependent deacetyla 29.2 47 0.0016 26.3 3.6 49 222-270 124-178 (246)
498 2pmr_A Uncharacterized protein 28.9 92 0.0031 20.3 4.3 26 49-74 40-65 (87)
499 2wb7_A PT26-6P; extra chromoso 28.8 2.5E+02 0.0084 24.9 8.1 36 63-98 454-490 (526)
500 2ytq_A Zinc finger protein 268 28.7 58 0.002 17.1 3.0 13 207-219 12-24 (46)
No 1
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=100.00 E-value=9e-46 Score=312.27 Aligned_cols=265 Identities=37% Similarity=0.642 Sum_probs=208.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHH
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQT 91 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~ 91 (281)
..+..+..+|..++..|+|++|+..|++++..+|+++.++.++|.+|..+|++++|+.++++|++++|+++.+++.+|.+
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHH
Q 023501 92 LLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKR---------------SWELQSLKEACE 156 (281)
Q Consensus 92 ~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~ 156 (281)
+..+|++++|+..|.+++.++|++... +...+...+...+...+......+ .+++.++.+.+.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~A~~~~~ 159 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQRLN--FGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQ 159 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCC--CCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhh--HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999975433 122333334333333332222221 122222222222
Q ss_pred HHHHHhhhhhhhhhccchhhhhhHHHHHHHHHHHHHHHhcCcCCCCCCCCcccccCCcccccCceecCCCcccccchHHh
Q 023501 157 AALEEKHVLDISRKEGFLDEASSTHLKQMEALRQVFRKAAEDDTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILD 236 (281)
Q Consensus 157 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~ 236 (281)
.+++..+... ........+.......+..+...|..+........+|..|.||||.++|.+||++||||+||+.||++
T Consensus 160 ~al~~~p~~~--~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~ 237 (281)
T 2c2l_A 160 RNHEGHEDDG--HIRAQQACIEAKHDKYMADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEE 237 (281)
T ss_dssp GGGTTTSCHH--HHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTSCCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHH
T ss_pred hhhccccchh--hhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHH
Confidence 2222111000 00001112334445566778888888877777888999999999999999999999999999999999
Q ss_pred HhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHHHHHcCCCccC
Q 023501 237 HLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMDKHGWAYKA 280 (281)
Q Consensus 237 ~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~~~~~~~~~~~ 280 (281)
||..++.+||+||.+++..+++||..|+++|+.|+..|||+++|
T Consensus 238 ~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~~~~ 281 (281)
T 2c2l_A 238 HLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWVEDY 281 (281)
T ss_dssp HHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCSSCC
T ss_pred HHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCCCCCC
Confidence 99876656999999999999999999999999999999999998
No 2
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.97 E-value=3.1e-32 Score=209.55 Aligned_cols=160 Identities=35% Similarity=0.641 Sum_probs=126.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc---------cchhhhhhHHHHHHHHHHHH
Q 023501 121 IVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHVLDISRKE---------GFLDEASSTHLKQMEALRQV 191 (281)
Q Consensus 121 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~ 191 (281)
+.+.|...+.++++..|..+...|..+..++..++..+++.+..+...... .....+..++.+.+..+..+
T Consensus 11 ~~~~I~~~l~~aKk~~w~~~e~~r~~~~~~l~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l 90 (179)
T 2f42_A 11 FGDDIPSALRIAKKKRWNSIEEKRISQENELHAYLSKLILAEKERELDDRVKQSDDSQNGGDISKMKSKHDKYLMDMDEL 90 (179)
T ss_dssp -----------CCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------------------CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999987765544221 12233566777888899999
Q ss_pred HHHhcCcCCCCCCCCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHHH
Q 023501 192 FRKAAEDDTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYM 271 (281)
Q Consensus 192 ~~~~~~~~~~~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~~ 271 (281)
|..+........+|..|.||||+++|.|||++||||+||+.||..||..++.+||+||.+++..+++||..|+++|+.|+
T Consensus 91 ~~~~~~~~~~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~ 170 (179)
T 2f42_A 91 FSQVDEKRKKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFI 170 (179)
T ss_dssp HHHHHHGGGCCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred HHHHhhhccccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHH
Confidence 98886666678899999999999999999999999999999999999875546999999999999999999999999999
Q ss_pred HHcCCCccC
Q 023501 272 DKHGWAYKA 280 (281)
Q Consensus 272 ~~~~~~~~~ 280 (281)
..|||++||
T Consensus 171 ~~~~~~~d~ 179 (179)
T 2f42_A 171 QENGWVEDY 179 (179)
T ss_dssp HHCTTCC--
T ss_pred HHCCCcCCC
Confidence 999999998
No 3
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.89 E-value=1.1e-23 Score=147.41 Aligned_cols=78 Identities=32% Similarity=0.450 Sum_probs=72.6
Q ss_pred CCCCCCCcccccCCcccccCceecCCC-cccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHHHHHcCCCc
Q 023501 200 TPAEVPDYLCCKITLDIFRDPVITPSG-VTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMDKHGWAY 278 (281)
Q Consensus 200 ~~~~~p~~~~c~i~~~~~~~pv~~~~g-~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~~~~~~~~~ 278 (281)
....+|.+|.||||+++|.|||+++|| |+||+.||++||..+. +||+||++++..+|+||..|+++|+.|+..++|+-
T Consensus 15 ~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~-~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~~ 93 (98)
T 1wgm_A 15 TYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQ-TDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQS 93 (98)
T ss_dssp CCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSC-BCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTTCS
T ss_pred hhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCC-CCCCCCCCCChhhceEcHHHHHHHHHHHHHcchhh
Confidence 345678999999999999999999999 9999999999998765 69999999999999999999999999999999874
No 4
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.89 E-value=6e-22 Score=146.45 Aligned_cols=108 Identities=28% Similarity=0.440 Sum_probs=105.2
Q ss_pred hchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHH
Q 023501 8 AGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYL 87 (281)
Q Consensus 8 ~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~ 87 (281)
..+|+.++.++++|+.+++.|+|++|+..|+++++++|.++.+|.++|.+|..+|++++|+.++++|++++|+++.+|+.
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501 88 LGQTLLQRNEYADGIKELEKALNLGRGA 115 (281)
Q Consensus 88 la~~~~~~g~~~~A~~~~~kal~~~p~~ 115 (281)
+|.++..+|++++|+..|+++++++|++
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~P~~ 114 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVDPSN 114 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCcCC
Confidence 9999999999999999999999998873
No 5
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.88 E-value=2.1e-23 Score=142.43 Aligned_cols=74 Identities=34% Similarity=0.520 Sum_probs=68.8
Q ss_pred CCCCCCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHHHHHcC
Q 023501 201 PAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMDKHG 275 (281)
Q Consensus 201 ~~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~~~~~~ 275 (281)
...+|..|.||||+++|.|||+++|||+||+.||++||..+. +||+||.+++..+++||..|+++|+.|+.+|+
T Consensus 8 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~-~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~ 81 (85)
T 2kr4_A 8 YSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSP-TDPFNRQMLTESMLEPVPELKEQIQAWMREKQ 81 (85)
T ss_dssp CTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCS-BCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred hhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCC-CCCCCcCCCChHhcchHHHHHHHHHHHHHHhh
Confidence 456789999999999999999999999999999999999765 69999999999999999999999999998764
No 6
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.88 E-value=3.2e-23 Score=145.64 Aligned_cols=75 Identities=33% Similarity=0.521 Sum_probs=69.7
Q ss_pred CCCCCCCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHHHHHcC
Q 023501 200 TPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMDKHG 275 (281)
Q Consensus 200 ~~~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~~~~~~ 275 (281)
....+|..|.||||+++|.|||+++|||+||+.||++||..+. +||+||.+++..+|+||..|+++|+.|+..|+
T Consensus 22 ~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~-~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~ 96 (100)
T 2kre_A 22 DYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSP-TDPFNRQTLTESMLEPVPELKEQIQAWMREKQ 96 (100)
T ss_dssp SCSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCS-BCSSSCCBCCTTSSEECHHHHHHHHHHHHTTT
T ss_pred hhccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCC-CCCCCCCCCChhhceECHHHHHHHHHHHHHhh
Confidence 3567799999999999999999999999999999999998655 69999999999999999999999999999875
No 7
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.85 E-value=3.2e-20 Score=141.38 Aligned_cols=113 Identities=12% Similarity=0.004 Sum_probs=109.3
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501 2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS 81 (281)
Q Consensus 2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 81 (281)
.+.+++..+|+.+..+..+|..+++.|+|++|+..|++++.++|+++.+|.++|.+|..+|+|++|+..+++|++++|++
T Consensus 24 ~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~ 103 (151)
T 3gyz_A 24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND 103 (151)
T ss_dssp CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC
T ss_pred CHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC
Confidence 35677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 82 VKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
+.+++.+|.+|..+|++++|+..|++++++.|+
T Consensus 104 ~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 104 YTPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999876
No 8
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.84 E-value=1.5e-21 Score=131.71 Aligned_cols=76 Identities=36% Similarity=0.657 Sum_probs=70.2
Q ss_pred CCCCCCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHHHHHcCC
Q 023501 201 PAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMDKHGW 276 (281)
Q Consensus 201 ~~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~~~~~~~ 276 (281)
...+|..+.||||.++|.+||+++|||+||+.||.+|+..+...||+||.++...++.||..|+++|+.|+.+|+.
T Consensus 2 ~~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~ 77 (78)
T 1t1h_A 2 SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGI 77 (78)
T ss_dssp CCCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCC
T ss_pred CcCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCC
Confidence 3467889999999999999999999999999999999987455699999999999999999999999999999875
No 9
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.83 E-value=1.9e-19 Score=136.48 Aligned_cols=108 Identities=15% Similarity=0.089 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-------chH-----HHHHHHHHHHHhcCHHHHHHHHHHHHhh-
Q 023501 11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN-------VPI-----YWTNRALCHLKRNDWTKVEADCRKAIQL- 77 (281)
Q Consensus 11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~~a~~~~~~~~~~~A~~~~~~al~l- 77 (281)
...+..++..|+.+++.|+|++|+..|++||+++|+ +.. +|+|+|.++..+|+|++|+.++++||++
T Consensus 8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 346888999999999999999999999999999999 444 9999999999999999999999999999
Q ss_pred ------cCcchhHH----HHHHHHHHHhcChHHHHHHHHHHHhhccCCCCC
Q 023501 78 ------DHDSVKGH----YLLGQTLLQRNEYADGIKELEKALNLGRGAKPK 118 (281)
Q Consensus 78 ------~p~~~~a~----~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~ 118 (281)
+|++.++| +++|.++..+|++++|+..|+++++++|+....
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 99999999 999999999999999999999999999985544
No 10
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.83 E-value=2.4e-19 Score=132.46 Aligned_cols=105 Identities=18% Similarity=0.297 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch-------
Q 023501 10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV------- 82 (281)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~------- 82 (281)
.++.|.+++++|+.+++.|+|++|+.+|++|++++|+++.+|.++|.+|..+|+|++|+.++++|++++|.+.
T Consensus 4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a 83 (127)
T 4gcn_A 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 83 KGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
.+++++|.++..+|++++|+..|++++...|+
T Consensus 84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 58899999999999999999999999998765
No 11
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.83 E-value=2.8e-19 Score=135.78 Aligned_cols=116 Identities=14% Similarity=0.067 Sum_probs=110.7
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501 2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS 81 (281)
Q Consensus 2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 81 (281)
.+..++..+|+.+..+..+|..++..|+|++|+..|.+++..+|+++.+|.++|.++..+|++++|+..+++++.++|++
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 88 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE 88 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501 82 VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP 117 (281)
Q Consensus 82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~ 117 (281)
+.+++.+|.++..+|++++|+..|+++++++|+++.
T Consensus 89 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 89 PRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence 999999999999999999999999999999887443
No 12
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.82 E-value=4.6e-19 Score=133.35 Aligned_cols=116 Identities=12% Similarity=0.073 Sum_probs=109.2
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501 2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS 81 (281)
Q Consensus 2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 81 (281)
.+..++..+|+.+..+..+|..++..|+|++|+..|.+++..+|+++.+|.++|.++..+|++++|+..+++++.++|++
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 85 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE 85 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 35677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501 82 VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP 117 (281)
Q Consensus 82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~ 117 (281)
+.+++.+|.++..+|++++|+..|++++.++|++..
T Consensus 86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 86 PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Confidence 999999999999999999999999999999987444
No 13
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.82 E-value=8.5e-19 Score=128.79 Aligned_cols=103 Identities=31% Similarity=0.448 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHH
Q 023501 11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQ 90 (281)
Q Consensus 11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~ 90 (281)
|..+..+..+|..++..|+|++|+..|++++..+|+++.+|.++|.++..+|++++|+.+++++++++|.++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcChHHHHHHHHHHHhhcc
Q 023501 91 TLLQRNEYADGIKELEKALNLGR 113 (281)
Q Consensus 91 ~~~~~g~~~~A~~~~~kal~~~p 113 (281)
++..+|++++|+..|++++.++|
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p 103 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDA 103 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCc
Confidence 99999999999999999999984
No 14
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.81 E-value=6e-19 Score=135.54 Aligned_cols=104 Identities=22% Similarity=0.304 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------------------CCCchHHHHHHHHHHHHhcCHHHHHHHHH
Q 023501 11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL------------------CPNVPIYWTNRALCHLKRNDWTKVEADCR 72 (281)
Q Consensus 11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~ 72 (281)
.+.+..++.+|+.+++.|+|++|+..|++++.+ +|.++.+|.++|.||+++|+|++|+.+++
T Consensus 8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 356889999999999999999999999999999 77788999999999999999999999999
Q ss_pred HHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 73 KAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 73 ~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
+|++++|.++++++.+|.++..+|++++|+..|.+++.++|+
T Consensus 88 ~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 88 EVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999887
No 15
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.80 E-value=4.3e-19 Score=134.97 Aligned_cols=113 Identities=13% Similarity=0.090 Sum_probs=106.7
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV 82 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 82 (281)
++.+...+|+.+..+..+|..|++.|+|++|+.+|+++++++|+++.+|.++|.+|..+|++++|+..++++++++|+++
T Consensus 20 ~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 99 (150)
T 4ga2_A 20 VQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQK 99 (150)
T ss_dssp HHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCH
Confidence 45677788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcChHHHHHH-HHHHHhhccCC
Q 023501 83 KGHYLLGQTLLQRNEYADGIKE-LEKALNLGRGA 115 (281)
Q Consensus 83 ~a~~~la~~~~~~g~~~~A~~~-~~kal~~~p~~ 115 (281)
.+++.+|.++..+|++++|... ++++++++|++
T Consensus 100 ~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~ 133 (150)
T 4ga2_A 100 DLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS 133 (150)
T ss_dssp HHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC
Confidence 9999999999999999887766 58999998873
No 16
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.2e-20 Score=129.30 Aligned_cols=72 Identities=24% Similarity=0.404 Sum_probs=63.4
Q ss_pred CCCcccccCCcccccCceecC-CCcccccchHHhHhccC-----CCCCCC--CCCC-cCCCCCcccHHHHHHHHHHHHHc
Q 023501 204 VPDYLCCKITLDIFRDPVITP-SGVTYERAVILDHLDKV-----GKFDPI--TREP-LRESQLVPNLAIKEAVRAYMDKH 274 (281)
Q Consensus 204 ~p~~~~c~i~~~~~~~pv~~~-~g~~~~~~~i~~~~~~~-----~~~cP~--~~~~-~~~~~~~~n~~l~~~i~~~~~~~ 274 (281)
.+..|.||||+++|.+||+++ |||+||+.||.+||..+ ..+||+ |+.. ++..+|+||..|+++|+.|+..+
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~~ 83 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKKR 83 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTTC
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHHh
Confidence 467899999999999999996 99999999999999864 236999 5555 88889999999999999998876
Q ss_pred C
Q 023501 275 G 275 (281)
Q Consensus 275 ~ 275 (281)
+
T Consensus 84 ~ 84 (94)
T 2yu4_A 84 H 84 (94)
T ss_dssp C
T ss_pred c
Confidence 4
No 17
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.78 E-value=1e-17 Score=128.85 Aligned_cols=109 Identities=25% Similarity=0.402 Sum_probs=104.8
Q ss_pred chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHH
Q 023501 9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLL 88 (281)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (281)
..+..+..+..+|..++..|+|++|+.+|++++.++|+++.+|.++|.+|..+|+|++|+.+++++++++|.++.+++.+
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 85 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL 85 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501 89 GQTLLQRNEYADGIKELEKALNLGRGAKP 117 (281)
Q Consensus 89 a~~~~~~g~~~~A~~~~~kal~~~p~~~~ 117 (281)
|.++..+|++++|+..|++++.++|+...
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 99999999999999999999999988554
No 18
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.78 E-value=3e-18 Score=160.96 Aligned_cols=141 Identities=14% Similarity=0.137 Sum_probs=122.8
Q ss_pred chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHH
Q 023501 9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLL 88 (281)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (281)
..|+.++++.++|..+.+.|++++|+.+|++|++++|+++.+|.++|.+|.++|++++|+..+++|++++|+++.+|+.+
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023501 89 GQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHVL 165 (281)
Q Consensus 89 a~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 165 (281)
|.++..+|++++|++.|+++++++|+... .+ ...+....+.++++++...++++++.++..
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~-------a~---------~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~ 144 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFAD-------AH---------SNLASIHKDSGNIPEAIASYRTALKLKPDF 144 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHH-------HH---------HHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HH---------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999887322 22 222333445677788888888888876653
No 19
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.78 E-value=6.9e-18 Score=125.30 Aligned_cols=127 Identities=38% Similarity=0.604 Sum_probs=112.3
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHH
Q 023501 10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLG 89 (281)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la 89 (281)
.+..+..+..+|..++..|+|++|+..|.+++..+|+++.++.++|.++..+|++++|+..++++++++|.++.+++.+|
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHH
Q 023501 90 QTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWE 138 (281)
Q Consensus 90 ~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (281)
.++..+|++++|+..|.+++.++|+.... ....+...+..+....+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~--~~~~~~~~l~~~~~~~~~ 131 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLN--FGDDIPSALRIAKKKRWN 131 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCC--CTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHH--HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998873322 334566666666554443
No 20
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.77 E-value=2.4e-17 Score=132.02 Aligned_cols=152 Identities=12% Similarity=0.090 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHH----------------HHHHHHHhcCHHHHHHHHHHHHh
Q 023501 13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTN----------------RALCHLKRNDWTKVEADCRKAIQ 76 (281)
Q Consensus 13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----------------~a~~~~~~~~~~~A~~~~~~al~ 76 (281)
.+..+...|..++..|+|++|+..|++++..+|+++.+++. +|.+|..+|++++|+..++++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999 99999999999999999999999
Q ss_pred hcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHH-------------------HHH
Q 023501 77 LDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKY-------------------LLW 137 (281)
Q Consensus 77 l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~-------------------~~~ 137 (281)
++|+++.+++.+|.++..+|++++|+..|+++++++|++.........+....+.... ...
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 162 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYR 162 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHH
Confidence 9999999999999999999999999999999999998854443333333221111100 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023501 138 EQESSKRSWELQSLKEACEAALEEKHV 164 (281)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (281)
.+......+++.++...++++++..|.
T Consensus 163 ~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 163 DGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 222333456677777777777776553
No 21
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.77 E-value=8.8e-18 Score=135.49 Aligned_cols=103 Identities=15% Similarity=0.126 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHH
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQT 91 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~ 91 (281)
.++..+..+|..++..|++++|+..|++++..+|+++.++.++|.++..+|++++|+..++++++++|+++.+++.+|.+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEA 82 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 33445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHh-----------cChHHHHHHHHHHHhhccC
Q 023501 92 LLQR-----------NEYADGIKELEKALNLGRG 114 (281)
Q Consensus 92 ~~~~-----------g~~~~A~~~~~kal~~~p~ 114 (281)
+..+ |++++|+..|+++++++|+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~ 116 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPR 116 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc
Confidence 5555 5555555555555555554
No 22
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.76 E-value=2e-17 Score=133.42 Aligned_cols=139 Identities=15% Similarity=0.058 Sum_probs=119.9
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh-----------cCHHHHHHH
Q 023501 2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKR-----------NDWTKVEAD 70 (281)
Q Consensus 2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~-----------~~~~~A~~~ 70 (281)
.++.++...|+.+..+..+|..+...|++++|+..|++++.++|+++.++.++|.++..+ |++++|+..
T Consensus 27 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~ 106 (217)
T 2pl2_A 27 LFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSV 106 (217)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHH
Confidence 356677888999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHhhcCcchhHHHHHHHHHHHhc-------ChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 023501 71 CRKAIQLDHDSVKGHYLLGQTLLQRN-------EYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSK 143 (281)
Q Consensus 71 ~~~al~l~p~~~~a~~~la~~~~~~g-------~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 143 (281)
++++++++|+++ .++..+| ++++|+..|+++++++ +. . . .....+....
T Consensus 107 ~~~al~~~P~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~-~------~---------~~~~la~~~~ 162 (217)
T 2pl2_A 107 LKDAERVNPRYA-------PLHLQRGLVYALLGERDKAEASLKQALALE-DT-P------E---------IRSALAELYL 162 (217)
T ss_dssp HHHHHHHCTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC-H------H---------HHHHHHHHHH
T ss_pred HHHHHHhCcccH-------HHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cc-h------H---------HHHHHHHHHH
Confidence 999999999875 5666664 7899999999999996 31 1 1 2334555667
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 023501 144 RSWELQSLKEACEAALEEKHV 164 (281)
Q Consensus 144 ~~~~~~~~~~~~~~~l~~~~~ 164 (281)
..++++++...++++++..|.
T Consensus 163 ~~g~~~~A~~~~~~al~~~P~ 183 (217)
T 2pl2_A 163 SMGRLDEALAQYAKALEQAPK 183 (217)
T ss_dssp HHTCHHHHHHHHHHHHHHSTT
T ss_pred HcCCHHHHHHHHHHHHHhCCC
Confidence 788899999999999987654
No 23
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.76 E-value=1.5e-18 Score=120.66 Aligned_cols=79 Identities=25% Similarity=0.431 Sum_probs=69.6
Q ss_pred CCCCCCCCcccccCCcccccCceecC-CCcccccchHHhHhccCC-CCCCCCCCCc-CCCCCcccHHHHHHHHHHHHHcC
Q 023501 199 DTPAEVPDYLCCKITLDIFRDPVITP-SGVTYERAVILDHLDKVG-KFDPITREPL-RESQLVPNLAIKEAVRAYMDKHG 275 (281)
Q Consensus 199 ~~~~~~p~~~~c~i~~~~~~~pv~~~-~g~~~~~~~i~~~~~~~~-~~cP~~~~~~-~~~~~~~n~~l~~~i~~~~~~~~ 275 (281)
.....++..+.||||.++|.+||+++ |||+||+.||..|+...+ ..||+||.++ ....+.+|..|.++|+.|...++
T Consensus 5 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~ 84 (92)
T 3ztg_A 5 SEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETG 84 (92)
T ss_dssp SSCCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHT
T ss_pred cccccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHh
Confidence 34566788999999999999999999 999999999999997543 4699999997 56789999999999999999877
Q ss_pred CC
Q 023501 276 WA 277 (281)
Q Consensus 276 ~~ 277 (281)
+.
T Consensus 85 ~~ 86 (92)
T 3ztg_A 85 YT 86 (92)
T ss_dssp CC
T ss_pred HH
Confidence 64
No 24
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.74 E-value=1.7e-16 Score=123.95 Aligned_cols=166 Identities=16% Similarity=0.122 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHH
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQT 91 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~ 91 (281)
+.+.++..+|..++..|+|++|+..|+++++++|+++.++.++|.+|..+|++++|+..+.+++..+|.++.++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 023501 92 LLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHVLDISRKE 171 (281)
Q Consensus 92 ~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 171 (281)
+...++++.|...+.+++.+.|.... +. ...+....+.++++++...++++++..|.....-..
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~-------~~---------~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 146 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYAD-------AY---------YKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQS 146 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHH-------HH---------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchH-------HH---------HHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHH
Confidence 99999999999999999999776322 22 222333445677888888888888876643222111
Q ss_pred -cchhhhhhHHHHHHHHHHHHHH
Q 023501 172 -GFLDEASSTHLKQMEALRQVFR 193 (281)
Q Consensus 172 -~~~~~~~~~~~~~~~~l~~~~~ 193 (281)
+.+....+++++.+..+.+.+.
T Consensus 147 lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 147 IGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh
Confidence 2333345566666666666554
No 25
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.74 E-value=2.1e-17 Score=155.28 Aligned_cols=114 Identities=17% Similarity=0.139 Sum_probs=109.7
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501 2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS 81 (281)
Q Consensus 2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 81 (281)
.++++++..|+.+.++.++|..+.+.|++++|+..|++|++++|+++.+|.++|.+|..+|++++|+..+++|++++|++
T Consensus 31 ~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~ 110 (723)
T 4gyw_A 31 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 110 (723)
T ss_dssp HHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 35677888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501 82 VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGA 115 (281)
Q Consensus 82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~ 115 (281)
+.+++.+|.+|..+|++++|+..|+++++++|+.
T Consensus 111 ~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~ 144 (723)
T 4gyw_A 111 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF 144 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999998873
No 26
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.74 E-value=8.9e-17 Score=138.29 Aligned_cols=113 Identities=24% Similarity=0.375 Sum_probs=106.9
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---------------hHHHHHHHHHHHHhcCHHHH
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV---------------PIYWTNRALCHLKRNDWTKV 67 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A 67 (281)
++.+....++.+..+..+|..+++.|+|++|+..|.+|+.++|.+ +.+|.++|.||.++|+|++|
T Consensus 136 ~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A 215 (336)
T 1p5q_A 136 WEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAA 215 (336)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 344556678899999999999999999999999999999999998 69999999999999999999
Q ss_pred HHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501 68 EADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGA 115 (281)
Q Consensus 68 ~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~ 115 (281)
+..+++|++++|.++.+++.+|.++..+|++++|+..|+++++++|++
T Consensus 216 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 263 (336)
T 1p5q_A 216 IESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 263 (336)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence 999999999999999999999999999999999999999999998873
No 27
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.73 E-value=1.3e-16 Score=142.89 Aligned_cols=114 Identities=28% Similarity=0.406 Sum_probs=104.8
Q ss_pred hhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---------------hHHHHHHHHHHHHhcCHHHHH
Q 023501 4 EAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV---------------PIYWTNRALCHLKRNDWTKVE 68 (281)
Q Consensus 4 ~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~ 68 (281)
+.+....++.+..++.+|+.+++.|+|++|+..|.+|+.++|.+ ..+|.++|.||+++|+|++|+
T Consensus 258 ~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~ 337 (457)
T 1kt0_A 258 EMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAV 337 (457)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 44556678899999999999999999999999999999999998 699999999999999999999
Q ss_pred HHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501 69 ADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP 117 (281)
Q Consensus 69 ~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~ 117 (281)
.++++|++++|+++++++++|.+|..+|++++|+..|+++++++|++..
T Consensus 338 ~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~ 386 (457)
T 1kt0_A 338 ECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 386 (457)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----C
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999999999999999999999999999999887443
No 28
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.72 E-value=8.6e-17 Score=117.64 Aligned_cols=100 Identities=14% Similarity=0.069 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHH
Q 023501 15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQ 94 (281)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~ 94 (281)
..+..+|..++..|++++|+..|.+++..+|+++.+|.++|.++..+|++++|+..+++|++++|+++.+++.+|.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcChHHHHHHHHHHHhhccC
Q 023501 95 RNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 95 ~g~~~~A~~~~~kal~~~p~ 114 (281)
+|++++|+..|+++++++|+
T Consensus 98 ~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHC----
T ss_pred cCCHHHHHHHHHHHHHhCcC
Confidence 99999999999999999886
No 29
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.72 E-value=1.7e-16 Score=128.36 Aligned_cols=100 Identities=16% Similarity=0.205 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHH
Q 023501 15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCP-NVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLL 93 (281)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~ 93 (281)
..+..+|..++..|+|++|+..|++++..+| .+..+++++|.++..+|++++|+..++++++++|.++.+++.+|.++.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 87 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYR 87 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 4455555555555555555555555555555 455555555555555555555555555555555555555555555555
Q ss_pred HhcChHHHHHHHHHHHhhccC
Q 023501 94 QRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 94 ~~g~~~~A~~~~~kal~~~p~ 114 (281)
.+|++++|+..+++++++.|+
T Consensus 88 ~~~~~~~A~~~~~~al~~~p~ 108 (228)
T 4i17_A 88 DMKNNQEYIATLTEGIKAVPG 108 (228)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT
T ss_pred HcccHHHHHHHHHHHHHHCCC
Confidence 555555555555555555444
No 30
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.71 E-value=5.1e-16 Score=122.99 Aligned_cols=109 Identities=25% Similarity=0.319 Sum_probs=103.5
Q ss_pred hhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch----------------HHHHHHHHHHHHhcCHHHHHH
Q 023501 6 GLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVP----------------IYWTNRALCHLKRNDWTKVEA 69 (281)
Q Consensus 6 ~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~~a~~~~~~~~~~~A~~ 69 (281)
.....+..+..+..+|..++..|+|++|+..|.+++.+.|.++ .++.++|.++..+|+|++|+.
T Consensus 30 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 109 (198)
T 2fbn_A 30 TDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAID 109 (198)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 3445677889999999999999999999999999999999987 899999999999999999999
Q ss_pred HHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 70 DCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 70 ~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
+++++++++|.++.+++.+|.++..+|++++|+..|++++.++|+
T Consensus 110 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 154 (198)
T 2fbn_A 110 HASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 154 (198)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999999999999999999876
No 31
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.71 E-value=3.4e-16 Score=122.17 Aligned_cols=146 Identities=15% Similarity=0.093 Sum_probs=129.7
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV 82 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 82 (281)
+++++..+|+.+..+..+|..++..|++++|+..+.+++...|+++.++..+|.++...++++.|...+.++++++|.+.
T Consensus 28 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~ 107 (184)
T 3vtx_A 28 YKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYA 107 (184)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 56677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023501 83 KGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEK 162 (281)
Q Consensus 83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (281)
.+++.+|.++..+|++++|+..|+++++++|... .+. ...+....+.++++++...++++++.+
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~-------~~~---------~~lg~~~~~~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 108 DAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFI-------RAY---------QSIGLAYEGKGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------HHH---------HHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhh-------hHH---------HHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999988632 222 223334455688888999999999876
Q ss_pred hh
Q 023501 163 HV 164 (281)
Q Consensus 163 ~~ 164 (281)
|.
T Consensus 172 p~ 173 (184)
T 3vtx_A 172 EK 173 (184)
T ss_dssp HH
T ss_pred cc
Confidence 53
No 32
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.71 E-value=1.3e-15 Score=123.02 Aligned_cols=109 Identities=14% Similarity=0.022 Sum_probs=97.8
Q ss_pred hhhhhhchH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501 3 LEAGLAGVA-KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS 81 (281)
Q Consensus 3 l~~~~~~~~-~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 81 (281)
++.++...| .....+..+|..++..|+|++|+.+|.+++..+|+++.++.++|.+|..+|++++|+..++++++++|++
T Consensus 30 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 109 (228)
T 4i17_A 30 YSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGN 109 (228)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence 445555555 6678888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501 82 VKGHYLLGQTLLQRNEYADGIKELEKALNL 111 (281)
Q Consensus 82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~ 111 (281)
+..+..++.++..+|..-.....+.+|+..
T Consensus 110 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 139 (228)
T 4i17_A 110 ATIEKLYAIYYLKEGQKFQQAGNIEKAEEN 139 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHhccHHHHHHH
Confidence 999999999999999887777777777665
No 33
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.70 E-value=1e-16 Score=140.15 Aligned_cols=143 Identities=10% Similarity=-0.018 Sum_probs=120.1
Q ss_pred hhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC-HHHHHHHHHHHHhhcCcchhH
Q 023501 6 GLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRND-WTKVEADCRKAIQLDHDSVKG 84 (281)
Q Consensus 6 ~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~l~p~~~~a 84 (281)
++..+|+.+.++..+|..+...|++++|+..|+++|.++|+++.+|.++|.++..+|+ +++|+..+++|++++|++..+
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a 168 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 168 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH
Confidence 4566789999999999999999999999999999999999999999999999999996 999999999999999999999
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023501 85 HYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHV 164 (281)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (281)
|+.+|.++..+|++++|+..|+++++++|++.. .+..++. ...+.+++.++...+.++++.++.
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~-------a~~~lg~---------~~~~~g~~~eAl~~~~~al~l~P~ 232 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQDAKNYH-------AWQHRQW---------VIQEFKLWDNELQYVDQLLKEDVR 232 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH-------HHHHHHH---------HHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCccCHH-------HHHHHHH---------HHHHcCChHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999887332 2222222 222345566677777777776554
No 34
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.69 E-value=4.7e-16 Score=124.45 Aligned_cols=94 Identities=18% Similarity=0.138 Sum_probs=87.8
Q ss_pred hhhhhhchHHHHHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHH
Q 023501 3 LEAGLAGVAKQAEQLRL----------------DGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTK 66 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~----------------~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~ 66 (281)
++.++...|+.+..+.. +|..++..|+|++|+..|+++++++|+++.++.++|.++..+|++++
T Consensus 27 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 106 (208)
T 3urz_A 27 FRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKD 106 (208)
T ss_dssp HHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHH
Confidence 55677778999999998 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCcchhHHHHHHHHHHHhc
Q 023501 67 VEADCRKAIQLDHDSVKGHYLLGQTLLQRN 96 (281)
Q Consensus 67 A~~~~~~al~l~p~~~~a~~~la~~~~~~g 96 (281)
|+..++++++++|+++.+++.+|.+|...|
T Consensus 107 A~~~~~~al~~~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 107 ALRMYEKILQLEADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999998876554
No 35
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.69 E-value=7.5e-17 Score=141.00 Aligned_cols=114 Identities=9% Similarity=0.008 Sum_probs=109.3
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc
Q 023501 2 VLEAGLAGVAKQAEQLRLDGNYYFSKDR-YGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80 (281)
Q Consensus 2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~ 80 (281)
.++.++...|+.+.+|..+|..+...|+ +++|+..|++++.++|+++.+|+++|.++..+|++++|+..+++|++++|+
T Consensus 119 ~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~ 198 (382)
T 2h6f_A 119 LTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK 198 (382)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred HHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 3566778889999999999999999997 999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501 81 SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGA 115 (281)
Q Consensus 81 ~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~ 115 (281)
+..+|+.+|.++..+|++++|+..|+++++++|.+
T Consensus 199 ~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~ 233 (382)
T 2h6f_A 199 NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN 233 (382)
T ss_dssp CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999998874
No 36
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.68 E-value=1.1e-14 Score=111.09 Aligned_cols=105 Identities=29% Similarity=0.500 Sum_probs=101.5
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHH
Q 023501 10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLG 89 (281)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la 89 (281)
..+.+..+..+|..++..|+|++|+..|.+++..+|.++.++.++|.++..+|++++|+..++++++++|.++.+++.+|
T Consensus 9 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a 88 (166)
T 1a17_A 9 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcChHHHHHHHHHHHhhccC
Q 023501 90 QTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 90 ~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
.++..+|++++|+..|.+++.++|.
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~p~ 113 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVKPH 113 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999776
No 37
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.68 E-value=2.9e-17 Score=124.80 Aligned_cols=97 Identities=12% Similarity=0.037 Sum_probs=89.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcCh
Q 023501 19 LDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEY 98 (281)
Q Consensus 19 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~ 98 (281)
.+|..+..+|++++|+..|.+++..+|.++..++++|.+|+++|+|++|+..++++++++|+++.+|+.+|.++..+|++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 36888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCC
Q 023501 99 ADGIKELEKALNLGRGA 115 (281)
Q Consensus 99 ~~A~~~~~kal~~~p~~ 115 (281)
++|+..|+++++++|+.
T Consensus 82 ~~A~~~~~~al~~~p~~ 98 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQ 98 (150)
T ss_dssp HHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 99999999999998873
No 38
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.67 E-value=3.5e-15 Score=106.81 Aligned_cols=102 Identities=26% Similarity=0.357 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHH
Q 023501 13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTL 92 (281)
Q Consensus 13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~ 92 (281)
.+..+..+|..++..|+|++|+..|.+++...|.++.++.++|.++..+|++++|+..++++++++|.++.+++.+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcChHHHHHHHHHHHhhccC
Q 023501 93 LQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 93 ~~~g~~~~A~~~~~kal~~~p~ 114 (281)
..+|++++|+..+.+++.++|+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~ 104 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEAN 104 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHhhHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999776
No 39
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.67 E-value=2.1e-15 Score=117.03 Aligned_cols=114 Identities=22% Similarity=0.346 Sum_probs=107.7
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHH-HHHhcCH--HHHHHHHHHHHhhcC
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALC-HLKRNDW--TKVEADCRKAIQLDH 79 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~-~~~~~~~--~~A~~~~~~al~l~p 79 (281)
++.++...|..+..+..+|..++..|+|++|+.+|.+++..+|.++.++.++|.+ +...|++ ++|+..++++++++|
T Consensus 33 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p 112 (177)
T 2e2e_A 33 LQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDS 112 (177)
T ss_dssp HHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCT
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCC
Confidence 4566677788899999999999999999999999999999999999999999999 8899999 999999999999999
Q ss_pred cchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCC
Q 023501 80 DSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAK 116 (281)
Q Consensus 80 ~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~ 116 (281)
.++.+++.+|.++..+|++++|+..|.+++.++|...
T Consensus 113 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 113 NEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 9999999999999999999999999999999988753
No 40
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.67 E-value=1.8e-15 Score=110.29 Aligned_cols=108 Identities=28% Similarity=0.401 Sum_probs=103.2
Q ss_pred hhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHH
Q 023501 7 LAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHY 86 (281)
Q Consensus 7 ~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~ 86 (281)
....+..+..+..+|..++..|++++|+..|.+++...|.++.++.++|.++...|++++|+..+++++.++|.++.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 84 (131)
T 2vyi_A 5 SEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYG 84 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hhcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHH
Confidence 44578889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 87 LLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 87 ~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
.+|.++..+|++++|+..|.+++.++|.
T Consensus 85 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 112 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAYYKKALELDPD 112 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999776
No 41
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.66 E-value=8.9e-16 Score=112.63 Aligned_cols=106 Identities=29% Similarity=0.406 Sum_probs=102.5
Q ss_pred chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHH
Q 023501 9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLL 88 (281)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (281)
..+..+..+..+|..++..|+|++|+..|.+++..+|.++.++.++|.++...|++++|+..++++++++|.++.+++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 89 GQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 89 a~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
|.++..+|++++|+..|++++.++|.
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~ 116 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSS 116 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999876
No 42
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.66 E-value=2e-17 Score=104.77 Aligned_cols=54 Identities=30% Similarity=0.544 Sum_probs=49.8
Q ss_pred cccccCCcccccCceec-CCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccH
Q 023501 207 YLCCKITLDIFRDPVIT-PSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNL 261 (281)
Q Consensus 207 ~~~c~i~~~~~~~pv~~-~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~ 261 (281)
.|.||||+++|.|||++ +|||+|||.||++|+..++ +||+||++++..+|+||.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~-~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTG-NDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHS-BCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCC-CCcCCcCCCChhhcEECc
Confidence 47899999999999999 8999999999999998776 499999999999999984
No 43
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.65 E-value=7.3e-17 Score=118.45 Aligned_cols=69 Identities=10% Similarity=0.086 Sum_probs=62.2
Q ss_pred CCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCC-CCCcccHHHHHHHHHHHHH
Q 023501 205 PDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRE-SQLVPNLAIKEAVRAYMDK 273 (281)
Q Consensus 205 p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~-~~~~~n~~l~~~i~~~~~~ 273 (281)
+..+.||||.++|.+||+++|||+||+.||..|+..+...||+||.++.. ..+.+|..|..+|+.|+..
T Consensus 50 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG 119 (124)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred ccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence 34678999999999999999999999999999998665569999999987 6899999999999998754
No 44
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.65 E-value=2.7e-15 Score=130.66 Aligned_cols=105 Identities=27% Similarity=0.445 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----------------hCCCchHHHHHHHHHHHHhcCHHHHHHHHHH
Q 023501 10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAIT----------------LCPNVPIYWTNRALCHLKRNDWTKVEADCRK 73 (281)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~----------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 73 (281)
..+.+..+..+|+.+++.|+|++|+..|++|+. .+|.++.+|.++|.+|+++|+|++|+.++++
T Consensus 219 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 298 (370)
T 1ihg_A 219 ILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLE 298 (370)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 456678899999999999999999999999999 7888899999999999999999999999999
Q ss_pred HHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 74 AIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 74 al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
|++++|.++++++.+|.+|..+|++++|+..|+++++++|+
T Consensus 299 al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~ 339 (370)
T 1ihg_A 299 ALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE 339 (370)
T ss_dssp HHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999886
No 45
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.65 E-value=1.5e-14 Score=119.37 Aligned_cols=156 Identities=9% Similarity=0.032 Sum_probs=126.3
Q ss_pred chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc---ch
Q 023501 9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV---PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD---SV 82 (281)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~---~~ 82 (281)
..+..+..++.+|..++..|+|++|+..|++++...|++ +.+++.+|.+|+.+|+|++|+..+++++++.|+ .+
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 456778999999999999999999999999999999998 899999999999999999999999999999885 46
Q ss_pred hHHHHHHHHHHH--------hcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 83 KGHYLLGQTLLQ--------RNEYADGIKELEKALNLGRGAKPKGYIVEDIWQEL-ARAKYLLWEQESSKRSWELQSLKE 153 (281)
Q Consensus 83 ~a~~~la~~~~~--------~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~ 153 (281)
.+++.+|.++.. +|++++|+..|++++...|++.........+.... .........+......+++.++..
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 799999999999 99999999999999999887544311111111110 111122445556667788999999
Q ss_pred HHHHHHHHhhh
Q 023501 154 ACEAALEEKHV 164 (281)
Q Consensus 154 ~~~~~l~~~~~ 164 (281)
.+.++++..+.
T Consensus 170 ~~~~~l~~~p~ 180 (261)
T 3qky_A 170 TYEAVFDAYPD 180 (261)
T ss_dssp HHHHHHHHCTT
T ss_pred HHHHHHHHCCC
Confidence 99999887665
No 46
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=99.65 E-value=4e-16 Score=145.96 Aligned_cols=74 Identities=27% Similarity=0.512 Sum_probs=68.9
Q ss_pred CCCCCCcccccCCcccccCceecCCC-cccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHHHHHcC
Q 023501 201 PAEVPDYLCCKITLDIFRDPVITPSG-VTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMDKHG 275 (281)
Q Consensus 201 ~~~~p~~~~c~i~~~~~~~pv~~~~g-~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~~~~~~ 275 (281)
..++|++|.|||+.++|.|||++|+| +||+|++|++|+..++ +||+||++++..+++||+.|+..|++|+.+++
T Consensus 885 ~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~-tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~ 959 (968)
T 3m62_A 885 YGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDS-TDPFNRMPLKLEDVTPNEELRQKILCFKKQKK 959 (968)
T ss_dssp HCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCC-BCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred ccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCC-CCCCCCCCCCcccccccHHHHHHHHHHHHHHH
Confidence 45789999999999999999999998 6999999999998765 69999999999999999999999999998874
No 47
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=3.1e-15 Score=111.90 Aligned_cols=106 Identities=35% Similarity=0.512 Sum_probs=102.0
Q ss_pred chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHH
Q 023501 9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV---PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGH 85 (281)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~ 85 (281)
..+..+..+..+|..++..|+|++|+..|++++..+|++ ..++.++|.+|..+|++++|+..++++++++|.++.++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 446788999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 86 YLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 86 ~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
+.+|.++..+|++++|+..|++++.++|+
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999876
No 48
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.64 E-value=2.7e-15 Score=109.50 Aligned_cols=103 Identities=28% Similarity=0.426 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc-------hhH
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS-------VKG 84 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-------~~a 84 (281)
+.+..+..+|..++..|+|++|+.+|.+++..+|.++.++.++|.++...|++++|+..+++++.+.|.+ +.+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 5678899999999999999999999999999999999999999999999999999999999999999987 999
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 85 HYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
++.+|.++..+|++++|+..|++++.+.|+
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999663
No 49
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.64 E-value=8.7e-16 Score=109.08 Aligned_cols=105 Identities=15% Similarity=0.179 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc--chhHHHHH
Q 023501 11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD--SVKGHYLL 88 (281)
Q Consensus 11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--~~~a~~~l 88 (281)
|..+..+..+|..++..|++++|+..|.+++..+|.++.++.++|.++..+|++++|+..++++++++|. +..+++.+
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 4456778899999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHh-cChHHHHHHHHHHHhhccCC
Q 023501 89 GQTLLQR-NEYADGIKELEKALNLGRGA 115 (281)
Q Consensus 89 a~~~~~~-g~~~~A~~~~~kal~~~p~~ 115 (281)
|.++..+ |++++|++.+.+++...|..
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 9999999 99999999999999998764
No 50
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.64 E-value=4.3e-16 Score=134.11 Aligned_cols=111 Identities=17% Similarity=0.279 Sum_probs=99.3
Q ss_pred hhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch-----------------HHHHHHHHHHHHhcCHHHHHH
Q 023501 7 LAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVP-----------------IYWTNRALCHLKRNDWTKVEA 69 (281)
Q Consensus 7 ~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~~a~~~~~~~~~~~A~~ 69 (281)
....++.+..++.+|+.+++.|+|++|+..|.+|+...|.+. .+|.++|.||.++|+|++|+.
T Consensus 172 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~ 251 (338)
T 2if4_A 172 VEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIG 251 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 345577899999999999999999999999999999999987 499999999999999999999
Q ss_pred HHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501 70 DCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP 117 (281)
Q Consensus 70 ~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~ 117 (281)
+++++++++|++.++++++|.+|..+|++++|+..|+++++++|++..
T Consensus 252 ~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~ 299 (338)
T 2if4_A 252 HCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKA 299 (338)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH
Confidence 999999999999999999999999999999999999999999887433
No 51
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.63 E-value=2.9e-15 Score=109.73 Aligned_cols=100 Identities=13% Similarity=0.084 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch---HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc---hhHHHHH
Q 023501 15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVP---IYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS---VKGHYLL 88 (281)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~l 88 (281)
..+..+|..++..|+|++|+..|.+++...|+++ .++..+|.++...|++++|+..++++++.+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 4577899999999999999999999999999988 799999999999999999999999999999999 8899999
Q ss_pred HHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 89 GQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 89 a~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
|.++..+|++++|+..|++++...|+
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999876
No 52
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.63 E-value=6.9e-15 Score=132.25 Aligned_cols=109 Identities=18% Similarity=0.159 Sum_probs=103.0
Q ss_pred hhhchHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhH
Q 023501 6 GLAGVAKQAEQLRLDGNYYFSKDRY-GAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKG 84 (281)
Q Consensus 6 ~~~~~~~~a~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a 84 (281)
.....+..+..+..+|..++..|+| ++|+.+|++++..+|+++.+|.++|.+|..+|++++|+..++++++++|+ ..+
T Consensus 94 ~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~ 172 (474)
T 4abn_A 94 VLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVS 172 (474)
T ss_dssp HHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHH
T ss_pred HhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHH
Confidence 3444566889999999999999999 99999999999999999999999999999999999999999999999999 799
Q ss_pred HHHHHHHHHHh---------cChHHHHHHHHHHHhhccCC
Q 023501 85 HYLLGQTLLQR---------NEYADGIKELEKALNLGRGA 115 (281)
Q Consensus 85 ~~~la~~~~~~---------g~~~~A~~~~~kal~~~p~~ 115 (281)
++.+|.++..+ |++++|+..|+++++++|+.
T Consensus 173 ~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 212 (474)
T 4abn_A 173 LQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD 212 (474)
T ss_dssp HHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC
Confidence 99999999999 99999999999999998874
No 53
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.63 E-value=1.6e-14 Score=111.55 Aligned_cols=102 Identities=16% Similarity=0.046 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHH
Q 023501 13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTL 92 (281)
Q Consensus 13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~ 92 (281)
.+..+..+|..++..|++++|+..|.+++...|.++.++..+|.++...|++++|+..++++++++|.++.+++.+|.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHhcChHHHHHHHHHHHhhccC
Q 023501 93 LQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 93 ~~~g~~~~A~~~~~kal~~~p~ 114 (281)
...|++++|+..+.+++...|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~ 108 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPI 108 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHhcCHHHHHHHHHHHHhcCcH
Confidence 5555555555555555555443
No 54
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.63 E-value=1.5e-16 Score=120.25 Aligned_cols=68 Identities=13% Similarity=0.203 Sum_probs=62.1
Q ss_pred CCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCC-CCcccHHHHHHHHHHHH
Q 023501 205 PDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRES-QLVPNLAIKEAVRAYMD 272 (281)
Q Consensus 205 p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~-~~~~n~~l~~~i~~~~~ 272 (281)
+..+.||||.++|.+||+++|||+||+.||..|+......||+||.++... .+.+|..|.++|+.|+.
T Consensus 76 ~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred ccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 456889999999999999999999999999999987655699999999987 89999999999999864
No 55
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.62 E-value=5.6e-14 Score=113.61 Aligned_cols=176 Identities=12% Similarity=0.056 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch---HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchh---HHH
Q 023501 13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVP---IYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVK---GHY 86 (281)
Q Consensus 13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~---a~~ 86 (281)
.+..+..+|..++..|+|++|+..|++++...|.++ .+++++|.+|+.+|+|++|+..+++++++.|++.. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 467889999999999999999999999999999864 78999999999999999999999999999999875 899
Q ss_pred HHHHHHHH------------------hcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHH-----HHHHHHHHHH
Q 023501 87 LLGQTLLQ------------------RNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAK-----YLLWEQESSK 143 (281)
Q Consensus 87 ~la~~~~~------------------~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~ 143 (281)
.+|.++.. .|++++|+..|+++++..|++.... .....+..+. .....+....
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~----~a~~~l~~~~~~~~~~~~~~a~~~~ 158 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTT----DATKRLVFLKDRLAKYEYSVAEYYT 158 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999986 5799999999999999988854431 1111111111 1133445556
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhh----hccchhhhhhHHHHHHHHHHHHH
Q 023501 144 RSWELQSLKEACEAALEEKHVLDISR----KEGFLDEASSTHLKQMEALRQVF 192 (281)
Q Consensus 144 ~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~ 192 (281)
+.+++.++...++++++..|...... .-+......+..++.+..+..+.
T Consensus 159 ~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~ 211 (225)
T 2yhc_A 159 ERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIA 211 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 77888999999999998766532210 11222334445555555554443
No 56
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.62 E-value=2.9e-14 Score=117.60 Aligned_cols=105 Identities=14% Similarity=0.139 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHH
Q 023501 10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLG 89 (281)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la 89 (281)
++..+..+..+|..++..|++++|+..|.+++..+|.++.++.++|.++...|++++|+..++++++++|.++.+++.+|
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 118 (275)
T 1xnf_A 39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 118 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcChHHHHHHHHHHHhhccC
Q 023501 90 QTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 90 ~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
.++..+|++++|+..|++++.++|.
T Consensus 119 ~~~~~~g~~~~A~~~~~~a~~~~~~ 143 (275)
T 1xnf_A 119 IALYYGGRDKLAQDDLLAFYQDDPN 143 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999876
No 57
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.62 E-value=2.1e-14 Score=116.25 Aligned_cols=146 Identities=13% Similarity=0.106 Sum_probs=119.8
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501 2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS 81 (281)
Q Consensus 2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 81 (281)
++++++...|..+..+..+|..++..|++++|+..|.+++...|.++.++..+|.++..+|++++|+..++++++++|.+
T Consensus 45 ~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 124 (243)
T 2q7f_A 45 AFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN 124 (243)
T ss_dssp THHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence 35566667778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 82 VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEE 161 (281)
Q Consensus 82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (281)
+.+++.+|.++...|++++|+..+++++...|.... + ....+......+++.++...+.+++..
T Consensus 125 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~---------~~~l~~~~~~~~~~~~A~~~~~~~~~~ 188 (243)
T 2q7f_A 125 GDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTE-------A---------RFQFGMCLANEGMLDEALSQFAAVTEQ 188 (243)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH-------H---------HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHH-------H---------HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999775211 1 122223334456667777777777765
Q ss_pred hh
Q 023501 162 KH 163 (281)
Q Consensus 162 ~~ 163 (281)
.+
T Consensus 189 ~~ 190 (243)
T 2q7f_A 189 DP 190 (243)
T ss_dssp CT
T ss_pred Cc
Confidence 44
No 58
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.62 E-value=6.9e-14 Score=115.35 Aligned_cols=159 Identities=17% Similarity=0.093 Sum_probs=125.5
Q ss_pred hhhhhhchHHH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHH--------hcCHHHHH
Q 023501 3 LEAGLAGVAKQ---AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV---PIYWTNRALCHLK--------RNDWTKVE 68 (281)
Q Consensus 3 l~~~~~~~~~~---a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~--------~~~~~~A~ 68 (281)
++.++...|.. +.++..+|..++..|+|++|+..|++++...|++ +.+++.+|.+++. +|++++|+
T Consensus 38 ~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~ 117 (261)
T 3qky_A 38 FKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAI 117 (261)
T ss_dssp HHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHH
T ss_pred HHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHH
Confidence 44555555555 8999999999999999999999999999998854 6789999999999 99999999
Q ss_pred HHHHHHHhhcCcchhHH-----------------HHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHH
Q 023501 69 ADCRKAIQLDHDSVKGH-----------------YLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELAR 131 (281)
Q Consensus 69 ~~~~~al~l~p~~~~a~-----------------~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~ 131 (281)
..++++++..|++..+. +.+|.+|..+|++++|+..|+++++..|++.. .......++.
T Consensus 118 ~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~a~~~l~~ 193 (261)
T 3qky_A 118 EAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPW----ADDALVGAMR 193 (261)
T ss_dssp HHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT----HHHHHHHHHH
T ss_pred HHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCch----HHHHHHHHHH
Confidence 99999999999987766 88999999999999999999999999887433 2233333333
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023501 132 AKYLLWEQ-ESSKRSWELQSLKEACEAALEEKHVL 165 (281)
Q Consensus 132 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~ 165 (281)
+...+... ......+++.++...+.++++..|..
T Consensus 194 ~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 194 AYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 32221110 00124588888999999999876643
No 59
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.61 E-value=9.1e-15 Score=134.20 Aligned_cols=147 Identities=14% Similarity=0.051 Sum_probs=118.7
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501 2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS 81 (281)
Q Consensus 2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 81 (281)
.+++++...|+.+..+..+|..++..|+|++|+..|+++++.+|+++.++.++|.+|..+|++++|+..++++++++|++
T Consensus 11 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 90 (568)
T 2vsy_A 11 QLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH 90 (568)
T ss_dssp ----------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 35667777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 023501 82 VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRS---WELQSLKEACEAA 158 (281)
Q Consensus 82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 158 (281)
+.+++.+|.++..+|++++|+..|+++++++|+... ....+ +...... ++.+++...+.++
T Consensus 91 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~l---------~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 91 PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPY-------ITAQL---------LNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-------HHHHH---------HHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHH---------HHHHHHhhccccHHHHHHHHHHH
Confidence 999999999999999999999999999999876322 22222 2222334 5667777777877
Q ss_pred HHHhhh
Q 023501 159 LEEKHV 164 (281)
Q Consensus 159 l~~~~~ 164 (281)
++..+.
T Consensus 155 l~~~p~ 160 (568)
T 2vsy_A 155 VAQGVG 160 (568)
T ss_dssp HHHTCC
T ss_pred HhcCCc
Confidence 776553
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.61 E-value=7.3e-15 Score=132.11 Aligned_cols=146 Identities=17% Similarity=0.194 Sum_probs=125.4
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh---------cCHHHHHHHHH
Q 023501 2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKR---------NDWTKVEADCR 72 (281)
Q Consensus 2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~ 72 (281)
.+++++...|+.+..+..+|..++..|+|++|+.+|.+++.++|+ +.++.++|.++..+ |++++|+..++
T Consensus 125 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~ 203 (474)
T 4abn_A 125 LLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAK 203 (474)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHH
Confidence 356677778899999999999999999999999999999999999 79999999999999 99999999999
Q ss_pred HHHhhcCcchhHHHHHHHHHHHh--------cChHHHHHHHHHHHhhcc---CCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 023501 73 KAIQLDHDSVKGHYLLGQTLLQR--------NEYADGIKELEKALNLGR---GAKPKGYIVEDIWQELARAKYLLWEQES 141 (281)
Q Consensus 73 ~al~l~p~~~~a~~~la~~~~~~--------g~~~~A~~~~~kal~~~p---~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 141 (281)
+|++++|+++.+++.+|.++..+ |++++|+..|+++++++| ... .++ ...+..
T Consensus 204 ~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-------~~~---------~~lg~~ 267 (474)
T 4abn_A 204 LAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNP-------DLH---------LNRATL 267 (474)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCH-------HHH---------HHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCH-------HHH---------HHHHHH
Confidence 99999999999999999999999 999999999999999988 421 222 222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 023501 142 SKRSWELQSLKEACEAALEEKHV 164 (281)
Q Consensus 142 ~~~~~~~~~~~~~~~~~l~~~~~ 164 (281)
....+++.++...+.++++..+.
T Consensus 268 ~~~~g~~~~A~~~~~~al~l~p~ 290 (474)
T 4abn_A 268 HKYEESYGEALEGFSQAAALDPA 290 (474)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC
Confidence 34456777788888888776654
No 61
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.60 E-value=4.2e-14 Score=125.12 Aligned_cols=157 Identities=17% Similarity=0.127 Sum_probs=123.0
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV 82 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 82 (281)
+..++..+|..+..+..+|..++..|+|++|+..|++++..+|.++.++..+|.++..+|++++|+..++++++++|.++
T Consensus 15 ~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 94 (450)
T 2y4t_A 15 TENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFT 94 (450)
T ss_dssp --------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred ccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 34566678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 83 KGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELA---RAKYLLWEQESSKRSWELQSLKEACEAAL 159 (281)
Q Consensus 83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 159 (281)
.+++.+|.++..+|++++|+..|++++.++|.... .......+. ........+......+++.++...+.+++
T Consensus 95 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 170 (450)
T 2y4t_A 95 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENE----EKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKIL 170 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh----hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999776220 002222111 11223333444555677777777777777
Q ss_pred HHhh
Q 023501 160 EEKH 163 (281)
Q Consensus 160 ~~~~ 163 (281)
+..+
T Consensus 171 ~~~~ 174 (450)
T 2y4t_A 171 EVCV 174 (450)
T ss_dssp HHCT
T ss_pred HhCC
Confidence 6544
No 62
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.60 E-value=7.7e-15 Score=110.92 Aligned_cols=90 Identities=8% Similarity=0.024 Sum_probs=84.7
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCH----------HHHHHHHHHHHhhcCcchhHHHHHHHHHHH
Q 023501 25 FSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDW----------TKVEADCRKAIQLDHDSVKGHYLLGQTLLQ 94 (281)
Q Consensus 25 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~al~l~p~~~~a~~~la~~~~~ 94 (281)
-+.+.|++|+..|.++++++|+++.+|.++|.++..++++ ++|+..+++||+++|++..+|+.+|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3456799999999999999999999999999999999875 599999999999999999999999999998
Q ss_pred hc-----------ChHHHHHHHHHHHhhccC
Q 023501 95 RN-----------EYADGIKELEKALNLGRG 114 (281)
Q Consensus 95 ~g-----------~~~~A~~~~~kal~~~p~ 114 (281)
+| ++++|+..|++|++++|+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 85 899999999999999887
No 63
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.60 E-value=7.4e-14 Score=119.13 Aligned_cols=148 Identities=16% Similarity=0.136 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHH
Q 023501 13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTL 92 (281)
Q Consensus 13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~ 92 (281)
+++.+..+|..++..|+|++|+..|.+++..+|+++.++.++|.++..+|++++|+..++++++++|.++.+++.+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023501 93 LQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQEL---ARAKYLLWEQESSKRSWELQSLKEACEAALEEKHV 164 (281)
Q Consensus 93 ~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (281)
...|++++|+..|.+++.++|.... .......+ .........+......+++.++...+.++++..+.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 152 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQE----EKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW 152 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHcCChHHHHHHHHHHHhcCCcccC----hHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999772100 11222222 12222333344555667777777777777766543
No 64
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.60 E-value=4.5e-14 Score=115.09 Aligned_cols=110 Identities=31% Similarity=0.414 Sum_probs=105.0
Q ss_pred hhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchh
Q 023501 4 EAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVK 83 (281)
Q Consensus 4 ~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 83 (281)
+.+....|..+..+..+|..++..|+|++|+..|.+++..+|.++.++.++|.++..+|++++|+..++++++++|.++.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 208 (258)
T 3uq3_A 129 EAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVR 208 (258)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHH
Confidence 34455788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhhcc
Q 023501 84 GHYLLGQTLLQRNEYADGIKELEKALNLGR 113 (281)
Q Consensus 84 a~~~la~~~~~~g~~~~A~~~~~kal~~~p 113 (281)
+++.+|.++..+|++++|+..++++++++|
T Consensus 209 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 238 (258)
T 3uq3_A 209 AYIRKATAQIAVKEYASALETLDAARTKDA 238 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCh
Confidence 999999999999999999999999999983
No 65
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.60 E-value=9.4e-16 Score=116.55 Aligned_cols=119 Identities=11% Similarity=0.003 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHH
Q 023501 30 YGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKAL 109 (281)
Q Consensus 30 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal 109 (281)
+..+-..|.+++.++|+++.+++++|.+++..|+|++|+..+++++.++|.++.+|+.+|.++..+|++++|+..|++++
T Consensus 18 ~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al 97 (151)
T 3gyz_A 18 AINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAF 97 (151)
T ss_dssp HHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 33344667888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023501 110 NLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHV 164 (281)
Q Consensus 110 ~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (281)
+++|++.. .....+......++++++...++++++..+.
T Consensus 98 ~l~P~~~~----------------~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 98 ALGKNDYT----------------PVFHTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHSSSCCH----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred hhCCCCcH----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99988444 2333444455668888899999999887543
No 66
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.60 E-value=1.5e-14 Score=125.96 Aligned_cols=111 Identities=17% Similarity=0.148 Sum_probs=77.4
Q ss_pred hhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchh
Q 023501 4 EAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVK 83 (281)
Q Consensus 4 ~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 83 (281)
..+....|+.+..+..+|..++..|++++|+.++++++..+|.++.+|..+|.++...|++++|+..++++++++|+++.
T Consensus 23 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 102 (388)
T 1w3b_A 23 MQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFID 102 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHH
Confidence 34455566666666677777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 84 GHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 84 a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
+++.+|.++...|++++|+..|.++++++|+
T Consensus 103 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 133 (388)
T 1w3b_A 103 GYINLAAALVAAGDMEGAVQAYVSALQYNPD 133 (388)
T ss_dssp HHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 7777777777777777777777777776665
No 67
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.59 E-value=3.5e-14 Score=122.48 Aligned_cols=75 Identities=16% Similarity=0.067 Sum_probs=38.8
Q ss_pred hhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc
Q 023501 6 GLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80 (281)
Q Consensus 6 ~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~ 80 (281)
++...|..+..+..+|..++..|++++|+..|.+++..+|+++.++.++|.+|..+|++++|+..++++++++|.
T Consensus 91 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 165 (365)
T 4eqf_A 91 AILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPK 165 (365)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH
T ss_pred HHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCcc
Confidence 333344445555555555555555555555555555555555555555555555555555555555555544443
No 68
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.59 E-value=1.7e-13 Score=109.31 Aligned_cols=141 Identities=16% Similarity=0.104 Sum_probs=112.2
Q ss_pred chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHH
Q 023501 9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLL 88 (281)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (281)
.+|..+..+..+|..++..|++++|+..|.+++...|.++.++..+|.++...|++++|+..++++++++|.+..+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-cChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023501 89 GQTLLQR-NEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKH 163 (281)
Q Consensus 89 a~~~~~~-g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (281)
|.++... |++++|+..+++++. .|..+. ...+... .+......+++.++...+.++++..+
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~----~~~~~~~---------l~~~~~~~~~~~~A~~~~~~~~~~~~ 144 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALA-DPTYPT----PYIANLN---------KGICSAKQGQFGLAEAYLKRSLAAQP 144 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHT-STTCSC----HHHHHHH---------HHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHhcCcHHHHHHHHHHHHc-CcCCcc----hHHHHHH---------HHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999 999999999999998 332221 1122222 22223344566666666777666544
No 69
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.59 E-value=4.8e-14 Score=122.69 Aligned_cols=145 Identities=17% Similarity=0.046 Sum_probs=112.7
Q ss_pred hhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchh
Q 023501 4 EAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVK 83 (281)
Q Consensus 4 ~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 83 (281)
+.++...|..+..+..+|..++..|++++|+..|++++..+|+++.+|.++|.++...|++++|+..++++++++|++..
T Consensus 57 ~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 136 (388)
T 1w3b_A 57 TLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYC 136 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTH
T ss_pred HHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 44555667778888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023501 84 GHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKH 163 (281)
Q Consensus 84 a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (281)
++..+|.++..+|++++|+..|.+++..+|+... .....+......+++.++...+++++...+
T Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~----------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 200 (388)
T 1w3b_A 137 VRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV----------------AWSNLGCVFNAQGEIWLAIHHFEKAVTLDP 200 (388)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHH----------------HHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH----------------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 8888888888888888888888888888665211 122233444556777778888888877655
Q ss_pred h
Q 023501 164 V 164 (281)
Q Consensus 164 ~ 164 (281)
.
T Consensus 201 ~ 201 (388)
T 1w3b_A 201 N 201 (388)
T ss_dssp T
T ss_pred C
Confidence 3
No 70
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.59 E-value=3.5e-14 Score=102.49 Aligned_cols=102 Identities=29% Similarity=0.482 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHH
Q 023501 13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTL 92 (281)
Q Consensus 13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~ 92 (281)
.+..+..+|..++..|++++|+..|.+++...|.++.++..+|.++...|++++|+..+++++.++|.++.+++.+|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcChHHHHHHHHHHHhhccC
Q 023501 93 LQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 93 ~~~g~~~~A~~~~~kal~~~p~ 114 (281)
...|++++|+..+++++.++|.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~ 109 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPN 109 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999776
No 71
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.58 E-value=2e-15 Score=141.60 Aligned_cols=140 Identities=7% Similarity=-0.034 Sum_probs=119.1
Q ss_pred hchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHH
Q 023501 8 AGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYL 87 (281)
Q Consensus 8 ~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~ 87 (281)
...|+.+..+..+|..++..|+|++|+..|+++++.+|+++.+|+++|.++..+|++++|+..+++|++++|+++.+++.
T Consensus 427 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~ 506 (681)
T 2pzi_A 427 VDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLA 506 (681)
T ss_dssp -CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHH
T ss_pred cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 56688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023501 88 LGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHV 164 (281)
Q Consensus 88 la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (281)
+|.++..+|++++ +..|+++++++|+... . ....+....+.++++++...++++++..+.
T Consensus 507 lg~~~~~~g~~~~-~~~~~~al~~~P~~~~-------a---------~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 566 (681)
T 2pzi_A 507 LAATAELAGNTDE-HKFYQTVWSTNDGVIS-------A---------AFGLARARSAEGDRVGAVRTLDEVPPTSRH 566 (681)
T ss_dssp HHHHHHHHTCCCT-TCHHHHHHHHCTTCHH-------H---------HHHHHHHHHHTTCHHHHHHHHHTSCTTSTT
T ss_pred HHHHHHHcCChHH-HHHHHHHHHhCCchHH-------H---------HHHHHHHHHHcCCHHHHHHHHHhhcccCcc
Confidence 9999999999999 9999999999887332 1 122233334456666677667666655443
No 72
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.58 E-value=3.4e-14 Score=115.01 Aligned_cols=146 Identities=13% Similarity=0.133 Sum_probs=124.7
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV 82 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 82 (281)
++.+....+..+..+..+|..++..|++++|+..|.+++...|.++.++..+|.++...|++++|+..++++++++|.++
T Consensus 80 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 159 (243)
T 2q7f_A 80 YDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDT 159 (243)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccH
Confidence 44556666778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023501 83 KGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEK 162 (281)
Q Consensus 83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (281)
.+++.+|.++...|++++|+..+.+++...|... .+. ...+......++..++...+.++++..
T Consensus 160 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~---------~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 160 EARFQFGMCLANEGMLDEALSQFAAVTEQDPGHA-------DAF---------YNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCH-------HHH---------HHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH-------HHH---------HHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999977521 122 222333345577777888888888765
Q ss_pred hh
Q 023501 163 HV 164 (281)
Q Consensus 163 ~~ 164 (281)
+.
T Consensus 224 p~ 225 (243)
T 2q7f_A 224 PD 225 (243)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 73
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.58 E-value=1.4e-15 Score=107.03 Aligned_cols=68 Identities=22% Similarity=0.242 Sum_probs=62.0
Q ss_pred CcccccCCcccccCceec-CCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHHHHHc
Q 023501 206 DYLCCKITLDIFRDPVIT-PSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMDKH 274 (281)
Q Consensus 206 ~~~~c~i~~~~~~~pv~~-~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~~~~~ 274 (281)
..+.||||.+.+.+||++ +|||+||+.||..|+..+. .||+||.++...++.+|..+.++|+.|....
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~-~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKT-QCPTCCVTVTEPDLKNNRILDELVKSLNFAR 89 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCC-BCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCC-CCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence 467899999999999987 8999999999999998665 5999999999889999999999999997654
No 74
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.58 E-value=4.8e-14 Score=114.93 Aligned_cols=144 Identities=14% Similarity=0.163 Sum_probs=121.2
Q ss_pred hhhhhchHHH-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------------------------hCCCchHH
Q 023501 4 EAGLAGVAKQ-------AEQLRLDGNYYFSKDRYGAAIDAYTEAIT--------------------------LCPNVPIY 50 (281)
Q Consensus 4 ~~~~~~~~~~-------a~~~~~~g~~~~~~~~~~~A~~~~~~al~--------------------------~~p~~~~~ 50 (281)
+.++...|+. +..+..+|..+...|++++|+.+|.+++. .+|.++.+
T Consensus 62 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 141 (258)
T 3uq3_A 62 NDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEE 141 (258)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHH
Confidence 4445545554 89999999999999999999999999999 66778899
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHH
Q 023501 51 WTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELA 130 (281)
Q Consensus 51 ~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~ 130 (281)
+.++|.++...|++++|+..++++++++|.++.+++.+|.++..+|++++|+..+.+++.++|... ..
T Consensus 142 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-------~~----- 209 (258)
T 3uq3_A 142 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV-------RA----- 209 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------HH-----
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHH-------HH-----
Confidence 999999999999999999999999999999999999999999999999999999999999977621 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023501 131 RAKYLLWEQESSKRSWELQSLKEACEAALEEKH 163 (281)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (281)
....+......++..++...+.++++..+
T Consensus 210 ----~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 238 (258)
T 3uq3_A 210 ----YIRKATAQIAVKEYASALETLDAARTKDA 238 (258)
T ss_dssp ----HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHhhHHHHHHHHHHHHHhCh
Confidence 22233334455777888888888887653
No 75
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.58 E-value=7.9e-14 Score=101.72 Aligned_cols=132 Identities=26% Similarity=0.392 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHH
Q 023501 15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQ 94 (281)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~ 94 (281)
..+..+|..++..|++++|+..|.+++...|.++..+..+|.++...|++++|+..+++++..+|.++.+++.+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023501 95 RNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEK 162 (281)
Q Consensus 95 ~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (281)
.|++++|+..+.+++...|... .+.. ..+......++..++...+..++...
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~-------~~~~---------~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSA-------EAWY---------NLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCH-------HHHH---------HHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhCCCCh-------HHHH---------HHHHHHHHHccHHHHHHHHHHHHccC
Confidence 9999999999999999976521 1111 11222334456666777777666543
No 76
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.58 E-value=9.9e-16 Score=123.17 Aligned_cols=68 Identities=16% Similarity=0.192 Sum_probs=61.2
Q ss_pred CCcccccCCcccccCcee-cCCCcccccchHHhHhccCC-CCCCC--CCCCcCCCCCcccHHHHHHHHHHHH
Q 023501 205 PDYLCCKITLDIFRDPVI-TPSGVTYERAVILDHLDKVG-KFDPI--TREPLRESQLVPNLAIKEAVRAYMD 272 (281)
Q Consensus 205 p~~~~c~i~~~~~~~pv~-~~~g~~~~~~~i~~~~~~~~-~~cP~--~~~~~~~~~~~~n~~l~~~i~~~~~ 272 (281)
...+.||||+.+|.+||+ +.|||+||+.||.+||..++ ..||+ |++++...+|+||..|+++|+.|..
T Consensus 179 ~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~ 250 (267)
T 3htk_C 179 KIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKM 250 (267)
T ss_dssp BCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHH
T ss_pred ceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHH
Confidence 457999999999999998 59999999999999998643 35999 9999999999999999999999855
No 77
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.57 E-value=7.8e-14 Score=113.81 Aligned_cols=97 Identities=15% Similarity=0.154 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHH
Q 023501 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLL 93 (281)
Q Consensus 14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~ 93 (281)
+..+..+|..++..|++++|+..|.+++..+|.++.++..+|.++...|++++|+..++++++++|.+..+++.+|.++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HhcChHHHHHHHHHHHh
Q 023501 94 QRNEYADGIKELEKALN 110 (281)
Q Consensus 94 ~~g~~~~A~~~~~kal~ 110 (281)
..|++++|+..+++++.
T Consensus 117 ~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp HTTCHHHHHHHHHHHTT
T ss_pred HHhHHHHHHHHHHHHHh
Confidence 77777777777777777
No 78
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.57 E-value=9.6e-14 Score=110.74 Aligned_cols=145 Identities=12% Similarity=0.029 Sum_probs=122.6
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh-cCHHHHHHHHHHHHh--hcC
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKR-NDWTKVEADCRKAIQ--LDH 79 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~--l~p 79 (281)
++.++...|..+..+..+|..+...|++++|+.+|.+++...|.++.++.++|.++... |++++|+..++++++ .+|
T Consensus 31 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 110 (225)
T 2vq2_A 31 IEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYP 110 (225)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCS
T ss_pred HHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCc
Confidence 44556666778899999999999999999999999999999999999999999999999 999999999999999 677
Q ss_pred cchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 80 DSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAAL 159 (281)
Q Consensus 80 ~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 159 (281)
.+..+++.+|.++...|++++|+..+.+++...|... .+. ...+......+++.++...+.+++
T Consensus 111 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~---------~~la~~~~~~~~~~~A~~~~~~~~ 174 (225)
T 2vq2_A 111 TPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFP-------PAF---------KELARTKMLAGQLGDADYYFKKYQ 174 (225)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-------HHH---------HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-------hHH---------HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7889999999999999999999999999999977621 111 222233344567777888888887
Q ss_pred HHhh
Q 023501 160 EEKH 163 (281)
Q Consensus 160 ~~~~ 163 (281)
...+
T Consensus 175 ~~~~ 178 (225)
T 2vq2_A 175 SRVE 178 (225)
T ss_dssp HHHC
T ss_pred HhCC
Confidence 7655
No 79
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.57 E-value=5.7e-14 Score=111.86 Aligned_cols=141 Identities=19% Similarity=0.139 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHH
Q 023501 11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQ 90 (281)
Q Consensus 11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~ 90 (281)
...+..+..+|..++..|+|++|+..|.+++ +| ++.++.++|.+|..+|++++|+..++++++++|.++.+++.+|.
T Consensus 3 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~ 79 (213)
T 1hh8_A 3 LVEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGM 79 (213)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 4567778999999999999999999999996 34 78999999999999999999999999999999999999999999
Q ss_pred HHHHhcChHHHHHHHHHHHhhccCCCCC---------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 91 TLLQRNEYADGIKELEKALNLGRGAKPK---------GYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEE 161 (281)
Q Consensus 91 ~~~~~g~~~~A~~~~~kal~~~p~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (281)
++..+|++++|+..|++++.+.|.+... ......+. ...+......+++.++...+.++++.
T Consensus 80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVL---------YNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHH---------HHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHH---------HHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 9999999999999999999998864410 00111222 23333344567888888889998876
Q ss_pred hh
Q 023501 162 KH 163 (281)
Q Consensus 162 ~~ 163 (281)
.+
T Consensus 151 ~p 152 (213)
T 1hh8_A 151 KS 152 (213)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.57 E-value=9.9e-14 Score=107.08 Aligned_cols=145 Identities=13% Similarity=0.024 Sum_probs=124.8
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV 82 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 82 (281)
++.+....|..+..+..+|..++..|++++|+.+|.+++...|.++.++.++|.++...|++++|+..++++++++|.++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 110 (186)
T 3as5_A 31 LEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINF 110 (186)
T ss_dssp HTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhH
Confidence 44556666778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023501 83 KGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEK 162 (281)
Q Consensus 83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (281)
.+++.+|.++...|++++|+..+++++...|.... .....+......++..++...+.++++..
T Consensus 111 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~----------------~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 111 NVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGK----------------VHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchH----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999765211 22333444455677778888888877754
Q ss_pred h
Q 023501 163 H 163 (281)
Q Consensus 163 ~ 163 (281)
+
T Consensus 175 ~ 175 (186)
T 3as5_A 175 E 175 (186)
T ss_dssp H
T ss_pred C
Confidence 4
No 81
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.57 E-value=1.3e-15 Score=107.21 Aligned_cols=69 Identities=19% Similarity=0.190 Sum_probs=61.4
Q ss_pred CcccccCCcccccCcee-cCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHHHHHc
Q 023501 206 DYLCCKITLDIFRDPVI-TPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMDKH 274 (281)
Q Consensus 206 ~~~~c~i~~~~~~~pv~-~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~~~~~ 274 (281)
..+.||||.++|.+||+ ++|||+||+.||.+|+......||+||.++...++++|..+..+++.+-+..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~ 90 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQ 90 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHHC
T ss_pred CCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHHH
Confidence 46789999999999999 9999999999999999977446999999999999999998888888775543
No 82
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.57 E-value=9.7e-14 Score=117.25 Aligned_cols=170 Identities=12% Similarity=0.053 Sum_probs=80.0
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCcchhHHHHH
Q 023501 10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRN-DWTKVEADCRKAIQLDHDSVKGHYLL 88 (281)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~p~~~~a~~~l 88 (281)
.|.....+...|..++..|++++|+..+.+++..+|.++.++..+|.++...| ++++|+..++++++++|.++.+++.+
T Consensus 52 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 131 (330)
T 3hym_B 52 DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAY 131 (330)
T ss_dssp CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHH
T ss_pred CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 33344444444445555555555555555555555555555555555555555 45555555555555555555555555
Q ss_pred HHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 023501 89 GQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHVLDIS 168 (281)
Q Consensus 89 a~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 168 (281)
|.++...|++++|+..+.+++.+.|..... ....+......+++.++...+.++++..+.....
T Consensus 132 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----------------~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 195 (330)
T 3hym_B 132 GHSFAVESEHDQAMAAYFTAAQLMKGCHLP----------------MLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFV 195 (330)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHTTTCSHH----------------HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhccccHHH----------------HHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHH
Confidence 555555555555555555555554431110 1111222233455566666666666544332111
Q ss_pred h-hccchhhhhhHHHHHHHHHHHHHHHh
Q 023501 169 R-KEGFLDEASSTHLKQMEALRQVFRKA 195 (281)
Q Consensus 169 ~-~~~~~~~~~~~~~~~~~~l~~~~~~~ 195 (281)
- .-+......+.+++.+..+...+...
T Consensus 196 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 223 (330)
T 3hym_B 196 MHEVGVVAFQNGEWKTAEKWFLDALEKI 223 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHh
Confidence 0 01222224455566666666655544
No 83
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.57 E-value=1.8e-14 Score=105.97 Aligned_cols=90 Identities=14% Similarity=0.194 Sum_probs=85.8
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV 82 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 82 (281)
+++++..+|..+..+..+|..++..|++++|+..|+++++++|+++.+|.++|.+|..+|++++|+.+++++++++|++.
T Consensus 36 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~ 115 (126)
T 4gco_A 36 YNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE 115 (126)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCH
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHH
Q 023501 83 KGHYLLGQTL 92 (281)
Q Consensus 83 ~a~~~la~~~ 92 (281)
.++..++.++
T Consensus 116 ~a~~~l~~~l 125 (126)
T 4gco_A 116 EAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhc
Confidence 9999998764
No 84
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.56 E-value=3.4e-15 Score=108.12 Aligned_cols=89 Identities=13% Similarity=0.117 Sum_probs=81.8
Q ss_pred hcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHH
Q 023501 26 SKDRYGAAIDAYTEAITL---CPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGI 102 (281)
Q Consensus 26 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~ 102 (281)
..|+|++|+.+|++++.. +|+++.++.++|.+|..+|+|++|+..++++++++|+++.+++.+|.++..+|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468999999999999999 58899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccC
Q 023501 103 KELEKALNLGRG 114 (281)
Q Consensus 103 ~~~~kal~~~p~ 114 (281)
..+++++...|+
T Consensus 82 ~~~~~al~~~p~ 93 (117)
T 3k9i_A 82 ELLLKIIAETSD 93 (117)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHhCCC
Confidence 999999999876
No 85
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.56 E-value=2e-14 Score=107.36 Aligned_cols=62 Identities=16% Similarity=0.262 Sum_probs=50.0
Q ss_pred cccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHHH
Q 023501 207 YLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYM 271 (281)
Q Consensus 207 ~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~~ 271 (281)
++.||||.+.|.+||++||||+||..||..|+..+. .||+||.++... .+|..+...|+.++
T Consensus 53 ~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~--~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKI-ECPICRKDIKSK--TYSLVLDNCINKMV 114 (138)
T ss_dssp HSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCS-BCTTTCCBCCCE--EECHHHHHHHHHHH
T ss_pred cCCCcccCcccCCceECCCCCCccHHHHHHHHHcCC-cCCCCCCcCCCC--CCccchhHHHHHHH
Confidence 578999999999999999999999999999998766 599999998743 23444445555443
No 86
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.56 E-value=1.5e-16 Score=107.23 Aligned_cols=66 Identities=18% Similarity=0.269 Sum_probs=57.1
Q ss_pred CCCCCCcccccCCcccccCceecCCCcccccchHHhHhccC------CCCCCCCCCCcCCCCCcccHHHHHH
Q 023501 201 PAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKV------GKFDPITREPLRESQLVPNLAIKEA 266 (281)
Q Consensus 201 ~~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~------~~~cP~~~~~~~~~~~~~n~~l~~~ 266 (281)
...+...+.||||.+.+.+||+++|||+||+.||..|+... ...||+||.++...++.+|..|.++
T Consensus 6 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~l 77 (79)
T 2egp_A 6 SGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANI 77 (79)
T ss_dssp SCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCC
T ss_pred HhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHh
Confidence 45567789999999999999999999999999999999863 3469999999998889999766544
No 87
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.56 E-value=4.3e-15 Score=105.77 Aligned_cols=94 Identities=22% Similarity=0.371 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc------hhHHH
Q 023501 13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS------VKGHY 86 (281)
Q Consensus 13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~------~~a~~ 86 (281)
.+..+..+|..++..|+|++|+..|++++..+|+++.++.++|.++..+|++++|+..++++++++|++ ..+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHhcChHHHHHHHH
Q 023501 87 LLGQTLLQRNEYADGIKELE 106 (281)
Q Consensus 87 ~la~~~~~~g~~~~A~~~~~ 106 (281)
.+|.++..+|+++.|+..++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 99999999999888776654
No 88
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.56 E-value=1.2e-13 Score=116.67 Aligned_cols=144 Identities=14% Similarity=0.013 Sum_probs=121.4
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKD-RYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS 81 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 81 (281)
++.++...|..+..+..+|..++..| ++++|+.+|.+++..+|.++.++..+|.++...|++++|+..+++++++.|.+
T Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 158 (330)
T 3hym_B 79 SHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC 158 (330)
T ss_dssp HHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc
Confidence 45566667788899999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 82 VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEE 161 (281)
Q Consensus 82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (281)
..+++.+|.++...|++++|+..+++++...|... .+. ...+......+++.++...+.+++..
T Consensus 159 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-------~~~---------~~l~~~~~~~~~~~~A~~~~~~a~~~ 222 (330)
T 3hym_B 159 HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDP-------FVM---------HEVGVVAFQNGEWKTAEKWFLDALEK 222 (330)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH-------HHH---------HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCh-------HHH---------HHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999977632 111 12222333456666777777777765
Q ss_pred h
Q 023501 162 K 162 (281)
Q Consensus 162 ~ 162 (281)
.
T Consensus 223 ~ 223 (330)
T 3hym_B 223 I 223 (330)
T ss_dssp H
T ss_pred h
Confidence 4
No 89
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.56 E-value=4.4e-13 Score=114.26 Aligned_cols=157 Identities=17% Similarity=0.195 Sum_probs=129.4
Q ss_pred hhhhhchH---HHHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHH
Q 023501 4 EAGLAGVA---KQAEQLRLD------------GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVE 68 (281)
Q Consensus 4 ~~~~~~~~---~~a~~~~~~------------g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~ 68 (281)
+.+....| +....+..+ |..++..|++++|+..|.+++...|.++.++..+|.++..+|++++|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 174 (359)
T 3ieg_A 95 KKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAI 174 (359)
T ss_dssp HHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 34444455 556665555 799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 69 ADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWEL 148 (281)
Q Consensus 69 ~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 148 (281)
..++++++++|.++.+++.+|.++...|++++|+..+.+++...|+... .-.....+......+..+....+.+++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~a~~~~~~~~~ 250 (359)
T 3ieg_A 175 SDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR----CFAHYKQVKKLNKLIESAEELIRDGRY 250 (359)
T ss_dssp HHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchH----HHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 9999999999999999999999999999999999999999999776332 122233334444455556666777888
Q ss_pred HHHHHHHHHHHHHhhh
Q 023501 149 QSLKEACEAALEEKHV 164 (281)
Q Consensus 149 ~~~~~~~~~~l~~~~~ 164 (281)
.++...+.+++...+.
T Consensus 251 ~~A~~~~~~~~~~~~~ 266 (359)
T 3ieg_A 251 TDATSKYESVMKTEPS 266 (359)
T ss_dssp HHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHhcCCC
Confidence 8898888888876554
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.56 E-value=1e-13 Score=101.14 Aligned_cols=112 Identities=28% Similarity=0.429 Sum_probs=104.1
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV 82 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 82 (281)
++.+....+..+..+..+|..++..|++++|+..|.+++...|.++.++.++|.++...|++++|+..++++++..|.+.
T Consensus 24 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 103 (136)
T 2fo7_A 24 YQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA 103 (136)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh
Confidence 34445556667888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 83 KGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
.+++.+|.++...|++++|+..+.+++..+|.
T Consensus 104 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 104 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999775
No 91
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.55 E-value=5.2e-15 Score=107.32 Aligned_cols=65 Identities=17% Similarity=0.232 Sum_probs=59.3
Q ss_pred CcccccCCcccccCceec-CCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHHHHH
Q 023501 206 DYLCCKITLDIFRDPVIT-PSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMDK 273 (281)
Q Consensus 206 ~~~~c~i~~~~~~~pv~~-~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~~~~ 273 (281)
..+.||||.++|.+||++ +|||+||+.||..|+. ..||+|+.++...++.+|..|..+|+.+...
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~ 86 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKL 86 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHH
T ss_pred hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHH
Confidence 468899999999999998 9999999999999997 3599999999888999999999999988543
No 92
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.55 E-value=7.5e-13 Score=118.69 Aligned_cols=103 Identities=26% Similarity=0.317 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHH
Q 023501 11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQ 90 (281)
Q Consensus 11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~ 90 (281)
.+.+..+..+|..+++.|+|++|+..|++++..+| ++.++.++|.++..+|++++|+..++++++++|.++.+++.+|.
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 81 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 46789999999999999999999999999999999 69999999999999999999999999999999999999999999
Q ss_pred HHHHhcChHHHHHHHHHHHhhccC
Q 023501 91 TLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 91 ~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
++..+|++++|+..|.+++...|.
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~ 105 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDF 105 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSC
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999874
No 93
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.55 E-value=2.3e-15 Score=107.63 Aligned_cols=66 Identities=14% Similarity=0.255 Sum_probs=59.6
Q ss_pred CCcccccCCcccccCceec-CCCcccccchHHhHhccCCCCCCCCCCCcCCC----CCcccHHHHHHHHHHH
Q 023501 205 PDYLCCKITLDIFRDPVIT-PSGVTYERAVILDHLDKVGKFDPITREPLRES----QLVPNLAIKEAVRAYM 271 (281)
Q Consensus 205 p~~~~c~i~~~~~~~pv~~-~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~----~~~~n~~l~~~i~~~~ 271 (281)
+..+.||||.+++.+||++ +|||+||+.||..|+..+. .||+|+.++... .+.+|..+.++++.+.
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~-~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~ 83 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSK-YCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV 83 (108)
T ss_dssp GGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCS-BCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred CCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCC-cCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence 5678999999999999997 9999999999999998765 599999999865 7899999999999884
No 94
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.55 E-value=1.1e-13 Score=110.24 Aligned_cols=102 Identities=13% Similarity=0.136 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch----------
Q 023501 13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV---------- 82 (281)
Q Consensus 13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~---------- 82 (281)
.+..+..+|..++..|+|++|+..|.+++..+|.++.++.++|.+|..+|++++|+..+++++++.|.+.
T Consensus 36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 115 (213)
T 1hh8_A 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ 115 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBC
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccc
Confidence 5679999999999999999999999999999999999999999999999999999999999999888766
Q ss_pred ------hHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 83 ------KGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 83 ------~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
.+++.+|.++..+|++++|+..|++++.+.|+
T Consensus 116 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 116 FKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp CEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred cCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 99999999999999999999999999999876
No 95
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.55 E-value=1.2e-13 Score=112.61 Aligned_cols=112 Identities=18% Similarity=0.093 Sum_probs=103.0
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh--hcCc
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQ--LDHD 80 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--l~p~ 80 (281)
++.++...|..+..+..+|..++..|++++|+..|.+++..+|.++.++.++|.++...|++++|+..++++++ .+|.
T Consensus 60 ~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 139 (252)
T 2ho1_A 60 LRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPE 139 (252)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTT
T ss_pred HHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcc
Confidence 45666667778899999999999999999999999999999999999999999999999999999999999999 8888
Q ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 81 SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 81 ~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
+..+++.+|.++...|++++|+..+.+++...|.
T Consensus 140 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 173 (252)
T 2ho1_A 140 RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN 173 (252)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999999999776
No 96
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.55 E-value=8e-14 Score=120.22 Aligned_cols=115 Identities=16% Similarity=0.271 Sum_probs=104.0
Q ss_pred hhhhhhchHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc
Q 023501 3 LEAGLAGVAK--QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80 (281)
Q Consensus 3 l~~~~~~~~~--~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~ 80 (281)
++.++...|. .+..+..+|..+...|++++|+..|.+++...|+++.++.++|.++..+|++++|+..++++++++|.
T Consensus 200 ~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 279 (365)
T 4eqf_A 200 YLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG 279 (365)
T ss_dssp HHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 3445555566 78899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501 81 SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP 117 (281)
Q Consensus 81 ~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~ 117 (281)
++.+++.+|.++..+|++++|+..|++++.+.|+...
T Consensus 280 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 316 (365)
T 4eqf_A 280 FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRN 316 (365)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC--
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCC
Confidence 9999999999999999999999999999999887433
No 97
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.55 E-value=1.5e-14 Score=130.23 Aligned_cols=107 Identities=29% Similarity=0.497 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHH
Q 023501 11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQ 90 (281)
Q Consensus 11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~ 90 (281)
++.+..+..+|..+++.|+|++|+..|++|++.+|+++.++.++|.+|..+|++++|+.++++|++++|.++.+++.+|.
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 82 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 82 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 56778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501 91 TLLQRNEYADGIKELEKALNLGRGAKP 117 (281)
Q Consensus 91 ~~~~~g~~~~A~~~~~kal~~~p~~~~ 117 (281)
+|..+|++++|+..|+++++++|+...
T Consensus 83 ~~~~~g~~~eA~~~~~~al~~~p~~~~ 109 (477)
T 1wao_1 83 SNMALGKFRAALRDYETVVKVKPHDKD 109 (477)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999999999887444
No 98
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.54 E-value=4.1e-13 Score=115.50 Aligned_cols=105 Identities=11% Similarity=0.066 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHH
Q 023501 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLL 93 (281)
Q Consensus 14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~ 93 (281)
+..+..+|..++..|+|++|+..|++++..+|.++.++.++|.++...|++++|+..++++++++|.++.+++.+|.++.
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT 143 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 56688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcChHHHHHHHHHHHhhccCCCCC
Q 023501 94 QRNEYADGIKELEKALNLGRGAKPK 118 (281)
Q Consensus 94 ~~g~~~~A~~~~~kal~~~p~~~~~ 118 (281)
.+|++++|+..+.+++.+.|.....
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~ 168 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPAYAHL 168 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGG
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHH
Confidence 9999999999999999998875443
No 99
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.54 E-value=4.2e-13 Score=121.25 Aligned_cols=116 Identities=16% Similarity=0.169 Sum_probs=89.7
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV 82 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 82 (281)
++.+....|+.+..+..+|..++..|++++|+..|.+++..+|+++.++.++|.++..+|++++|+..++++++++|.++
T Consensus 299 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 378 (537)
T 3fp2_A 299 FQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLP 378 (537)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 34455556667777788888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCC
Q 023501 83 KGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPK 118 (281)
Q Consensus 83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~ 118 (281)
.+++.+|.++...|++++|+..|++++.+.|.....
T Consensus 379 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 414 (537)
T 3fp2_A 379 EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh
Confidence 888888888888888888888888888777664443
No 100
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.54 E-value=2.5e-15 Score=109.17 Aligned_cols=70 Identities=27% Similarity=0.423 Sum_probs=63.2
Q ss_pred CCCCCCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHH
Q 023501 201 PAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAY 270 (281)
Q Consensus 201 ~~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~ 270 (281)
...++..+.||||.+++.+||+++|||+||+.||..|+......||+||.++...++.+|..+.+.|..+
T Consensus 12 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l 81 (118)
T 3hct_A 12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (118)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred ccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence 3456788999999999999999999999999999999987654699999999998999999999988876
No 101
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=3.2e-15 Score=101.11 Aligned_cols=64 Identities=19% Similarity=0.251 Sum_probs=54.4
Q ss_pred CCCCCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHH
Q 023501 202 AEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAV 267 (281)
Q Consensus 202 ~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i 267 (281)
......+.||||.+.+.+||+++|||+||+.||.+|+.... .||+||.++. ..+.+|..|...+
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-~CP~Cr~~~~-~~~~~~~~l~~~~ 73 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATP-RCYICDQPTG-GIFNPAKELMAKL 73 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCS-BCSSSCCBCC-SCCEECHHHHHHH
T ss_pred ccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCC-cCCCcCcccc-ccCCcHHHHHHHH
Confidence 44456789999999999999999999999999999998766 5999999997 6788886554443
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.53 E-value=1.9e-14 Score=135.00 Aligned_cols=111 Identities=10% Similarity=0.051 Sum_probs=107.0
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV 82 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 82 (281)
+++++...|+.+..+..+|..++..|+|++|+..|+++++++|+++.++.++|.++..+|++++ +..|++|++++|+++
T Consensus 456 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~ 534 (681)
T 2pzi_A 456 LDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVI 534 (681)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCH
T ss_pred HHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchH
Confidence 5567777888999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 83 KGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
.+++.+|.++..+|++++|+..|+++++++|+
T Consensus 535 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 566 (681)
T 2pzi_A 535 SAAFGLARARSAEGDRVGAVRTLDEVPPTSRH 566 (681)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhcccCcc
Confidence 99999999999999999999999999999876
No 103
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.52 E-value=1.4e-14 Score=96.02 Aligned_cols=61 Identities=26% Similarity=0.341 Sum_probs=51.0
Q ss_pred CCCCCCCcccccCCcccccCceecC-CCcccccchHHhHhccCC-CCCCCCCCCcC-CCCCccc
Q 023501 200 TPAEVPDYLCCKITLDIFRDPVITP-SGVTYERAVILDHLDKVG-KFDPITREPLR-ESQLVPN 260 (281)
Q Consensus 200 ~~~~~p~~~~c~i~~~~~~~pv~~~-~g~~~~~~~i~~~~~~~~-~~cP~~~~~~~-~~~~~~n 260 (281)
....++..+.||||.++|.+||+++ |||+||+.||.+|+.... ..||+||.++. .+.+.+|
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 8 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp CCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred ccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 3456678899999999999999999 999999999999998653 36999999854 4456665
No 104
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.52 E-value=7e-14 Score=120.31 Aligned_cols=113 Identities=19% Similarity=0.307 Sum_probs=106.0
Q ss_pred hhhhhhchHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc
Q 023501 3 LEAGLAGVAK--QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80 (281)
Q Consensus 3 l~~~~~~~~~--~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~ 80 (281)
++.++...|. .+..+..+|..++..|++++|+..|.+++..+|+++.++.++|.++..+|++++|+..++++++++|.
T Consensus 204 ~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 283 (368)
T 1fch_A 204 FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 283 (368)
T ss_dssp HHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3445555666 78999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501 81 SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGA 115 (281)
Q Consensus 81 ~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~ 115 (281)
++.+++.+|.++..+|++++|+..|++++.+.|+.
T Consensus 284 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 284 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999998875
No 105
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.52 E-value=1.5e-15 Score=103.88 Aligned_cols=66 Identities=23% Similarity=0.394 Sum_probs=56.8
Q ss_pred CCCCCCcccccCCcccccCceecCCCcccccchHHhHhccC-----CCCCCCCCCCcCCCCCcccHHHHHH
Q 023501 201 PAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKV-----GKFDPITREPLRESQLVPNLAIKEA 266 (281)
Q Consensus 201 ~~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~-----~~~cP~~~~~~~~~~~~~n~~l~~~ 266 (281)
...+...+.||||.+.+.+||+++|||+||+.||..|+... ...||+|+.++...++.+|..|.++
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecw_A 13 LEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANI 83 (85)
T ss_dssp CCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSS
T ss_pred HHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHh
Confidence 44566789999999999999999999999999999999872 3369999999998899999766544
No 106
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.51 E-value=1.3e-13 Score=113.72 Aligned_cols=100 Identities=14% Similarity=0.280 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc----hhHHHHHH
Q 023501 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS----VKGHYLLG 89 (281)
Q Consensus 14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~----~~a~~~la 89 (281)
++.+...|..++..|+|++|+..|++++..+|+++.++..+|.++..+|++++|+..++++++ .|.+ ..+++.+|
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHH
Confidence 345566666666667777777777777666666666666666666666777777776666666 3333 23366666
Q ss_pred HHHHHhcChHHHHHHHHHHHhhccC
Q 023501 90 QTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 90 ~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
.++..+|++++|+..|+++++++|.
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~ 106 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTT 106 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcc
Confidence 6666677777777777766666555
No 107
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=2.2e-15 Score=103.02 Aligned_cols=66 Identities=18% Similarity=0.344 Sum_probs=56.6
Q ss_pred CCCCCCcccccCCcccccCceecCCCcccccchHHhHhcc-----CCCCCCCCCCCcCCCCCcccHHHHHH
Q 023501 201 PAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDK-----VGKFDPITREPLRESQLVPNLAIKEA 266 (281)
Q Consensus 201 ~~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~-----~~~~cP~~~~~~~~~~~~~n~~l~~~ 266 (281)
...+...+.||||.+.+.+|++++|||+||+.||..|+.. ....||+|+.++...++.+|..|.++
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecv_A 13 LVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANI 83 (85)
T ss_dssp CCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCC
T ss_pred HHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHh
Confidence 4456678999999999999999999999999999999976 23369999999999899998766543
No 108
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.6e-14 Score=93.64 Aligned_cols=57 Identities=14% Similarity=0.167 Sum_probs=49.3
Q ss_pred CCCCCCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCC
Q 023501 201 PAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQL 257 (281)
Q Consensus 201 ~~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~ 257 (281)
...++..+.||||.+.+.+||+++|||+||+.||.+|+......||+||.++...++
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 9 VKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred hhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 345567899999999999999999999999999999996544469999999987654
No 109
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.51 E-value=5.6e-14 Score=115.90 Aligned_cols=111 Identities=11% Similarity=0.081 Sum_probs=97.2
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc----hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV----PIYWTNRALCHLKRNDWTKVEADCRKAIQLD 78 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~ 78 (281)
++.++...|+.+..+..+|..++..|+|++|+..|.+++. .|.+ +.+|.++|.++..+|++++|+..++++++++
T Consensus 26 ~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~ 104 (272)
T 3u4t_A 26 FNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD 104 (272)
T ss_dssp HHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 4556666777788899999999999999999999999998 4444 3458999999999999999999999999999
Q ss_pred CcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 79 HDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 79 p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
|.++.++..+|.++..+|++++|+..|++++.++|.
T Consensus 105 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 140 (272)
T 3u4t_A 105 TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT 140 (272)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC
Confidence 999999999999999999999999999999998665
No 110
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.51 E-value=5.3e-15 Score=107.03 Aligned_cols=68 Identities=16% Similarity=0.268 Sum_probs=60.0
Q ss_pred CCCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCC-------CCCcccHHHHHHHHHHH
Q 023501 204 VPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRE-------SQLVPNLAIKEAVRAYM 271 (281)
Q Consensus 204 ~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~-------~~~~~n~~l~~~i~~~~ 271 (281)
...++.||||.+++.+||+++|||+||+.||..|+..+...||+||.++.. ..+..|..|...|+.+.
T Consensus 12 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~ 86 (115)
T 3l11_A 12 SLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY 86 (115)
T ss_dssp CHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred CCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence 345789999999999999999999999999999998755579999999863 57888999999999884
No 111
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.51 E-value=2.1e-13 Score=105.84 Aligned_cols=114 Identities=10% Similarity=0.036 Sum_probs=94.2
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH-HhcCHHHHHHHHHHHHhhcCcc
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHL-KRNDWTKVEADCRKAIQLDHDS 81 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~l~p~~ 81 (281)
++.++...|+.+..+..+|..+...|++++|+..|++++...| ++.++..++.+.. ..+...+|+..++++++++|++
T Consensus 29 ~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~ 107 (176)
T 2r5s_A 29 IQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDN 107 (176)
T ss_dssp HHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCC
Confidence 4566777888888899999999999999999999999988888 7776666664432 3334455788999999999999
Q ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501 82 VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP 117 (281)
Q Consensus 82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~ 117 (281)
+.+++.+|.++...|++++|+..|+++++++|++..
T Consensus 108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 143 (176)
T 2r5s_A 108 FELACELAVQYNQVGRDEEALELLWNILKVNLGAQD 143 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccCh
Confidence 999999999999999999999999999999887543
No 112
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.51 E-value=7.3e-15 Score=105.81 Aligned_cols=66 Identities=18% Similarity=0.367 Sum_probs=57.9
Q ss_pred cccccCCcccccCceecCCCcccccchHHhHhccCC--CCCCCCCCCcCCCCCcccHHHHHHHHHHHH
Q 023501 207 YLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVG--KFDPITREPLRESQLVPNLAIKEAVRAYMD 272 (281)
Q Consensus 207 ~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~--~~cP~~~~~~~~~~~~~n~~l~~~i~~~~~ 272 (281)
.+.||||.+.+.+||+++|||+||+.||..|+.... ..||+|+.++...++.+|..+..+++.+..
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK 88 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred CCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHH
Confidence 567999999999999999999999999999998543 359999999999999999887777777753
No 113
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.51 E-value=6.4e-14 Score=105.97 Aligned_cols=114 Identities=11% Similarity=-0.011 Sum_probs=99.0
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhcc
Q 023501 34 IDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGR 113 (281)
Q Consensus 34 ~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p 113 (281)
-..|.+++.++|.++..++++|.+++..|+|++|+..+++++.++|.++.+++.+|.++..+|++++|+..|++++.++|
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023501 114 GAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKH 163 (281)
Q Consensus 114 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (281)
+.... ....+......++..++...+.++++..+
T Consensus 87 ~~~~~----------------~~~lg~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 87 XEPRF----------------PFHAAECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp TCTHH----------------HHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred CCchH----------------HHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 74332 22333444556788888888999888755
No 114
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.51 E-value=9.3e-13 Score=116.44 Aligned_cols=144 Identities=19% Similarity=0.246 Sum_probs=119.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhc
Q 023501 17 LRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRN 96 (281)
Q Consensus 17 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g 96 (281)
+..+|..++..|++++|+..|++++...|.++.++.++|.+|...|++++|+..++++++++|.++.+++.+|.++...|
T Consensus 146 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 225 (450)
T 2y4t_A 146 LRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLG 225 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 44558889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023501 97 EYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHV 164 (281)
Q Consensus 97 ~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (281)
++++|+..|++++.+.|+... .......+.........+......+++.++...+.+++...+.
T Consensus 226 ~~~~A~~~~~~~~~~~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~ 289 (450)
T 2y4t_A 226 DHELSLSEVRECLKLDQDHKR----CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS 289 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS
T ss_pred CHHHHHHHHHHHHHhCCChHH----HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 999999999999999876322 1222223334444444555666677788888888888776543
No 115
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.50 E-value=9.5e-14 Score=107.60 Aligned_cols=129 Identities=16% Similarity=0.139 Sum_probs=105.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHH-HHHhcCh
Q 023501 20 DGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQT-LLQRNEY 98 (281)
Q Consensus 20 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~-~~~~g~~ 98 (281)
.+..++..|+|++|+..|.+++..+|.++.++..+|.+|...|++++|+..++++++++|.++.+++.+|.+ +...|++
T Consensus 16 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 16 PLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQH 95 (177)
T ss_dssp TTCCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred hhhhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCc
Confidence 345567889999999999999999999999999999999999999999999999999999999999999999 8899999
Q ss_pred --HHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023501 99 --ADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHV 164 (281)
Q Consensus 99 --~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (281)
++|+..+.+++.++|... .+. ...+......+++.++...+.++++..+.
T Consensus 96 ~~~~A~~~~~~al~~~p~~~-------~~~---------~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEI-------TAL---------MLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCH-------HHH---------HHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred chHHHHHHHHHHHHhCCCcH-------HHH---------HHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 999999999999987632 122 22233344567788888999999886554
No 116
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.50 E-value=8e-15 Score=113.01 Aligned_cols=68 Identities=21% Similarity=0.300 Sum_probs=59.9
Q ss_pred CCCcccccCCcccccCceec-CCCcccccchHHhHhccCCCCCCCCCCCcC-CCCCcccHHHHHHHHHHH
Q 023501 204 VPDYLCCKITLDIFRDPVIT-PSGVTYERAVILDHLDKVGKFDPITREPLR-ESQLVPNLAIKEAVRAYM 271 (281)
Q Consensus 204 ~p~~~~c~i~~~~~~~pv~~-~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~-~~~~~~n~~l~~~i~~~~ 271 (281)
+...+.||||.+.+.+||++ +|||+||+.||..|+..+...||+||.++. ...+.+|..|..+|..+.
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~ 120 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIY 120 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC
T ss_pred CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHH
Confidence 34578999999999999986 999999999999999874556999999995 457999999999999883
No 117
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.50 E-value=7.4e-13 Score=119.61 Aligned_cols=142 Identities=12% Similarity=0.093 Sum_probs=96.2
Q ss_pred hhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHH
Q 023501 6 GLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGH 85 (281)
Q Consensus 6 ~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~ 85 (281)
++...|. +..+..+|..++..|++++|+..|.+++..+|+++.++..+|.++...|++++|+..++++++++|.++.++
T Consensus 269 ~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 347 (537)
T 3fp2_A 269 SINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPY 347 (537)
T ss_dssp HHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHH
T ss_pred HHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 3333444 566677777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023501 86 YLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHV 164 (281)
Q Consensus 86 ~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (281)
+.+|.++..+|++++|+..+.+++...|.... +. ...+......+++.++...+.++++..+.
T Consensus 348 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~---------~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 348 IQLACLLYKQGKFTESEAFFNETKLKFPTLPE-------VP---------TFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH-------HH---------HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH-------HH---------HHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 77777777777777777777777777655322 11 11223334456777777788887776554
No 118
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.49 E-value=3.5e-13 Score=108.88 Aligned_cols=137 Identities=13% Similarity=0.075 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchH---HHHHHHHHHHH------------------hcCHHHHHHHH
Q 023501 13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPI---YWTNRALCHLK------------------RNDWTKVEADC 71 (281)
Q Consensus 13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~a~~~~~------------------~~~~~~A~~~~ 71 (281)
...++..+|..+++.|+|++|+..|++++...|+++. +++.+|.++.. .|++++|+..+
T Consensus 40 ~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 119 (225)
T 2yhc_A 40 SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDF 119 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHH
Confidence 4578999999999999999999999999999999864 78999999986 57899999999
Q ss_pred HHHHhhcCcchhHH-----------------HHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHH
Q 023501 72 RKAIQLDHDSVKGH-----------------YLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKY 134 (281)
Q Consensus 72 ~~al~l~p~~~~a~-----------------~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~ 134 (281)
+++++..|++..+. +.+|.+|...|++++|+..|+++++..|++.. ....
T Consensus 120 ~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~~~a--------- 186 (225)
T 2yhc_A 120 SKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQA----TRDA--------- 186 (225)
T ss_dssp HHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHH----HHHH---------
T ss_pred HHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCc----cHHH---------
Confidence 99999999987665 67899999999999999999999999887321 1122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023501 135 LLWEQESSKRSWELQSLKEACEAALEEK 162 (281)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (281)
....+....+.++.+++...+..+....
T Consensus 187 ~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 187 LPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 2333444455677777877777766543
No 119
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=3.3e-14 Score=93.80 Aligned_cols=59 Identities=17% Similarity=0.234 Sum_probs=52.1
Q ss_pred CCCCCCcccccCCcccccCceec-CCCcccccchHHhHhccCCCCCCCCCCCcCCCCCccc
Q 023501 201 PAEVPDYLCCKITLDIFRDPVIT-PSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPN 260 (281)
Q Consensus 201 ~~~~p~~~~c~i~~~~~~~pv~~-~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n 260 (281)
...+...+.||||.+.+.+||++ +|||+||+.||.+|+.... .||+||.++...++.+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~-~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 9 LSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSN-RCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCS-SCTTTCCCCCSSCSCCC
T ss_pred HhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCC-cCCCcCcccCccccccc
Confidence 45566789999999999999986 9999999999999998765 59999999998887776
No 120
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.49 E-value=1.3e-12 Score=110.21 Aligned_cols=114 Identities=18% Similarity=0.243 Sum_probs=106.5
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV 82 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 82 (281)
++.+....|..+..+..+|..++..|++++|+..|.+++..+|+++.++.++|.++...|++++|+..++++++++|.++
T Consensus 161 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 240 (327)
T 3cv0_A 161 LHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYV 240 (327)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 34455566777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCC
Q 023501 83 KGHYLLGQTLLQRNEYADGIKELEKALNLGRGAK 116 (281)
Q Consensus 83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~ 116 (281)
.+++.+|.++..+|++++|+..+++++.+.|...
T Consensus 241 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 274 (327)
T 3cv0_A 241 RVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGT 274 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccc
Confidence 9999999999999999999999999999988743
No 121
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.48 E-value=6.7e-13 Score=111.58 Aligned_cols=108 Identities=11% Similarity=0.021 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHh-cCHHHHHHHHHHHHhhcCcc-
Q 023501 10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV------PIYWTNRALCHLKR-NDWTKVEADCRKAIQLDHDS- 81 (281)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~-~~~~~A~~~~~~al~l~p~~- 81 (281)
.+..+..+.++|..+...|+|++|+.+|++|+.+.|.. +.++.++|.+|... |++++|+..+++|+++.|..
T Consensus 73 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~ 152 (292)
T 1qqe_A 73 EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ 152 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC
Confidence 34568899999999999999999999999999997653 56899999999995 99999999999999998864
Q ss_pred -----hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501 82 -----VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP 117 (281)
Q Consensus 82 -----~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~ 117 (281)
..++..+|.++..+|++++|+..|++++.+.|....
T Consensus 153 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 193 (292)
T 1qqe_A 153 SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL 193 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc
Confidence 567899999999999999999999999999887554
No 122
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.47 E-value=9.5e-12 Score=104.79 Aligned_cols=107 Identities=13% Similarity=0.056 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHH
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQT 91 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~ 91 (281)
..+..+..+|..++..|+|++|+..|++++..+|+++.++..+|.++...|++++|+..++++++++|.++.+++.+|.+
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcChHHHHHHHHHHHhhccCCCCC
Q 023501 92 LLQRNEYADGIKELEKALNLGRGAKPK 118 (281)
Q Consensus 92 ~~~~g~~~~A~~~~~kal~~~p~~~~~ 118 (281)
+...|++++|+..+.+++...|.....
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~ 125 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQL 125 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHH
Confidence 999999999999999999998875443
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.47 E-value=7.2e-13 Score=100.77 Aligned_cols=110 Identities=13% Similarity=0.139 Sum_probs=99.5
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV 82 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 82 (281)
++.++...|..+..+..+|..++..|+|++|+..|.+++..+|.++.++.++|.++..+|++++|+..++++++++|.+.
T Consensus 36 ~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~ 115 (166)
T 1a17_A 36 YSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 115 (166)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Confidence 44566667788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHH--HHHHHhcChHHHHHHHHHHHhhc
Q 023501 83 KGHYLLG--QTLLQRNEYADGIKELEKALNLG 112 (281)
Q Consensus 83 ~a~~~la--~~~~~~g~~~~A~~~~~kal~~~ 112 (281)
.++..++ ..+...|++++|+..+.++..+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 116 DAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 8885554 44888999999999999887664
No 124
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.47 E-value=7.5e-13 Score=90.48 Aligned_cols=86 Identities=27% Similarity=0.409 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHH
Q 023501 11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQ 90 (281)
Q Consensus 11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~ 90 (281)
+..+..+..+|..++..|+|++|+.+|.+++..+|.++.++.++|.++..+|++++|+..++++++++|.++.++..+|.
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhc
Q 023501 91 TLLQRN 96 (281)
Q Consensus 91 ~~~~~g 96 (281)
++..+|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 998765
No 125
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.47 E-value=7.2e-13 Score=111.23 Aligned_cols=139 Identities=12% Similarity=-0.014 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHH
Q 023501 11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQ 90 (281)
Q Consensus 11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~ 90 (281)
|..+..+..+|..++..|++++|+..|++++..+|+++.++.++|.++...|++++|+..+++++..+|+....+...+.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 56678889999999999999999999999999999999999999999999999999999999999999988888888888
Q ss_pred HHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023501 91 TLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHVL 165 (281)
Q Consensus 91 ~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 165 (281)
.+...++.++|+..|++++.++|++.. .....+......++..++...+.+++..++..
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~----------------~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAA----------------LATQLALQLHQVGRNEEALELLFGHLRXDLTA 252 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHH----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHH----------------HHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence 888999999999999999999887322 22333334455677788888888888876643
No 126
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.46 E-value=1.1e-12 Score=94.19 Aligned_cols=85 Identities=13% Similarity=0.123 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Q 023501 31 GAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALN 110 (281)
Q Consensus 31 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~ 110 (281)
++|+..|.+++..+|+++.++.++|.+|...|++++|+..++++++++|.++.+++.+|.++..+|++++|+..|++++.
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCC
Q 023501 111 LGRGA 115 (281)
Q Consensus 111 ~~p~~ 115 (281)
+.|..
T Consensus 82 ~~~~~ 86 (115)
T 2kat_A 82 AAQSR 86 (115)
T ss_dssp HHHHH
T ss_pred hcccc
Confidence 97763
No 127
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.46 E-value=7.3e-13 Score=97.36 Aligned_cols=108 Identities=17% Similarity=0.196 Sum_probs=88.1
Q ss_pred chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHH
Q 023501 47 VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIW 126 (281)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~ 126 (281)
.+.++.++|.++++.|+|++|+..|++|++++|.++.+|+.+|.+|..+|++++|+..+.++++++|+..........+.
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999987655422222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023501 127 QELARAKYLLWEQESSKRSWELQSLKEACEAALEEKH 163 (281)
Q Consensus 127 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (281)
...+......+++.++...+.+++...+
T Consensus 87 ---------~~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 87 ---------SRAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp ---------HHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred ---------HHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 2333444556778888888888887543
No 128
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.46 E-value=1.1e-12 Score=98.19 Aligned_cols=113 Identities=10% Similarity=0.038 Sum_probs=95.1
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 35 DAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 35 ~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
..|.+++..+|++...++.+|.+++..|+|++|+..+++++.++|.++.+++.+|.++..+|++++|+..|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023501 115 AKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKH 163 (281)
Q Consensus 115 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (281)
+... ....+......+++.++...++++++..+
T Consensus 85 ~~~~----------------~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 85 EPRF----------------PFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp CTHH----------------HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcHH----------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4331 22333344556778888888888888765
No 129
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.46 E-value=2.9e-12 Score=117.40 Aligned_cols=110 Identities=15% Similarity=0.118 Sum_probs=73.1
Q ss_pred hhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhH
Q 023501 5 AGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKG 84 (281)
Q Consensus 5 ~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a 84 (281)
......|..+..+..+|..+.+.|++++|+..|.+++..+|.+..+|..++.+|.+.|++++|+..++++++++|.+..+
T Consensus 364 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 443 (597)
T 2xpi_A 364 DLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLP 443 (597)
T ss_dssp HHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHH
T ss_pred HHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHH
Confidence 33344455566666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 85 HYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
+..+|.++...|++++|+..|++++.+.|.
T Consensus 444 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 473 (597)
T 2xpi_A 444 YLFLGMQHMQLGNILLANEYLQSSYALFQY 473 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 666666666666666666666666666554
No 130
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.45 E-value=2.7e-12 Score=108.61 Aligned_cols=113 Identities=15% Similarity=0.099 Sum_probs=104.2
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHHH-hCCCchHHHHHHHHHHHHhcCHHH
Q 023501 2 VLEAGLAGVAKQAEQLRLDGNYYFS-------KDRY-------GAAIDAYTEAIT-LCPNVPIYWTNRALCHLKRNDWTK 66 (281)
Q Consensus 2 ~l~~~~~~~~~~a~~~~~~g~~~~~-------~~~~-------~~A~~~~~~al~-~~p~~~~~~~~~a~~~~~~~~~~~ 66 (281)
++++++...|..+..|...|..+.. .|++ ++|+..|++|+. ++|++..+|.++|.++...|++++
T Consensus 38 ~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~ 117 (308)
T 2ond_A 38 AYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEK 117 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHH
Confidence 3566777789999999999999874 5885 999999999999 799999999999999999999999
Q ss_pred HHHHHHHHHhhcCcchh-HHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 67 VEADCRKAIQLDHDSVK-GHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 67 A~~~~~~al~l~p~~~~-a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
|...++++++++|.++. +|..+|.++...|++++|...|.++++..|.
T Consensus 118 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~ 166 (308)
T 2ond_A 118 VHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART 166 (308)
T ss_dssp HHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC
T ss_pred HHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Confidence 99999999999999987 9999999999999999999999999999775
No 131
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.45 E-value=8.2e-13 Score=113.46 Aligned_cols=100 Identities=18% Similarity=0.119 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHH
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQT 91 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~ 91 (281)
..+..+.++|..+++.|+|++|+.+|++++.++|+++.+++++|.+|..+|++++|+.++++|++++|.+..++..+|.+
T Consensus 194 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 273 (336)
T 1p5q_A 194 LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC 273 (336)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcChHHH-HHHHHHHHhh
Q 023501 92 LLQRNEYADG-IKELEKALNL 111 (281)
Q Consensus 92 ~~~~g~~~~A-~~~~~kal~~ 111 (281)
+..+|++++| ...|.+++..
T Consensus 274 ~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 274 QQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 4566666644
No 132
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1.1e-13 Score=91.65 Aligned_cols=57 Identities=19% Similarity=0.305 Sum_probs=48.8
Q ss_pred CCCCCCcccccCCcccccCceecCCCcccccchHHhHhcc--CCCCCCCCCCCcCCCCC
Q 023501 201 PAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDK--VGKFDPITREPLRESQL 257 (281)
Q Consensus 201 ~~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~--~~~~cP~~~~~~~~~~~ 257 (281)
...+...+.||||.+.+.+||+++|||+||+.||..|+.. ....||+||.++...++
T Consensus 14 ~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred HHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 3456778999999999999999999999999999999973 33369999999987654
No 133
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.45 E-value=1e-12 Score=108.22 Aligned_cols=112 Identities=16% Similarity=0.111 Sum_probs=101.7
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV 82 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 82 (281)
++.++...|..+..+..+|..++..|++++|+.+|.+++..+|.++.++.++|.++..+|++++|+..++++++++|.+.
T Consensus 66 ~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 145 (275)
T 1xnf_A 66 FSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP 145 (275)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence 45566667788899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501 83 KGHYLLGQTLLQRNEYADGIKELEKALNLGRGA 115 (281)
Q Consensus 83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~ 115 (281)
......+.. ...|++++|+..+.+++...|..
T Consensus 146 ~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~ 177 (275)
T 1xnf_A 146 FRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKE 177 (275)
T ss_dssp HHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcc
Confidence 777766654 67799999999999999987763
No 134
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.45 E-value=1.2e-12 Score=120.08 Aligned_cols=114 Identities=17% Similarity=0.026 Sum_probs=108.8
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV 82 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 82 (281)
+++++...|+.+..+..+|..++..|++++|+.+|+++++.+|+++.++.++|.+|..+|++++|+..++++++++|++.
T Consensus 46 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 125 (568)
T 2vsy_A 46 VQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEP 125 (568)
T ss_dssp HHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 55677778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHh---cChHHHHHHHHHHHhhccCCC
Q 023501 83 KGHYLLGQTLLQR---NEYADGIKELEKALNLGRGAK 116 (281)
Q Consensus 83 ~a~~~la~~~~~~---g~~~~A~~~~~kal~~~p~~~ 116 (281)
.+++.+|.++..+ |++++|+..++++++.+|...
T Consensus 126 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (568)
T 2vsy_A 126 YITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAV 162 (568)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCS
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCccc
Confidence 9999999999999 999999999999999988743
No 135
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.45 E-value=1.7e-12 Score=116.34 Aligned_cols=115 Identities=15% Similarity=0.196 Sum_probs=96.2
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV 82 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 82 (281)
++.++...|..+..+..+|..++..|++++|+..|.+++...|.++.++.++|.++...|++++|+..++++++.+|.++
T Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 372 (514)
T 2gw1_A 293 FDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAP 372 (514)
T ss_dssp HHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCS
T ss_pred HHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCH
Confidence 44555566677778888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501 83 KGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP 117 (281)
Q Consensus 83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~ 117 (281)
.+++.+|.++...|++++|+..+.+++.+.|....
T Consensus 373 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 407 (514)
T 2gw1_A 373 EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG 407 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccch
Confidence 88888888888888888888888888888776543
No 136
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.45 E-value=3.8e-12 Score=116.60 Aligned_cols=113 Identities=12% Similarity=0.049 Sum_probs=93.7
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV 82 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 82 (281)
++.+....|.....+..++..+.+.|++++|+..|.+++...|.++.++..+|.+|.+.|++++|+..++++++++|.+.
T Consensus 328 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 407 (597)
T 2xpi_A 328 TTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFG 407 (597)
T ss_dssp HHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Confidence 34455555666777888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501 83 KGHYLLGQTLLQRNEYADGIKELEKALNLGRGA 115 (281)
Q Consensus 83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~ 115 (281)
.+++.+|.++...|++++|+..|++++...|..
T Consensus 408 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 440 (597)
T 2xpi_A 408 PAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT 440 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 888888888888888888888888888887653
No 137
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.44 E-value=2.5e-13 Score=114.05 Aligned_cols=114 Identities=11% Similarity=-0.055 Sum_probs=106.7
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501 2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS 81 (281)
Q Consensus 2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 81 (281)
.+++++...|+++.++..+|..+...|++++|+..|++++..+|+........+..+...++.++|+..+++++.++|++
T Consensus 139 ~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~ 218 (287)
T 3qou_A 139 LLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPED 218 (287)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCcc
Confidence 35667778899999999999999999999999999999999999888888888888999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501 82 VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGA 115 (281)
Q Consensus 82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~ 115 (281)
+.+++.+|.++...|++++|+..|.++++.+|+.
T Consensus 219 ~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 219 AALATQLALQLHQVGRNEEALELLFGHLRXDLTA 252 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999998874
No 138
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.44 E-value=2.2e-14 Score=103.85 Aligned_cols=67 Identities=25% Similarity=0.385 Sum_probs=55.8
Q ss_pred CCCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCc-ccHHHHHHHHHH
Q 023501 204 VPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLV-PNLAIKEAVRAY 270 (281)
Q Consensus 204 ~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~-~n~~l~~~i~~~ 270 (281)
++..+.||||.+++.+||+++|||+||+.||.+|+...+..||+||.++...++. ++..+...+..+
T Consensus 20 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l 87 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSL 87 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHC
T ss_pred ccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHh
Confidence 3457899999999999999999999999999999987554699999999987755 466666666544
No 139
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.44 E-value=4.4e-14 Score=109.39 Aligned_cols=69 Identities=28% Similarity=0.433 Sum_probs=62.2
Q ss_pred CCCCCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHH
Q 023501 202 AEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAY 270 (281)
Q Consensus 202 ~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~ 270 (281)
..+++.+.||||.++|.+||+++|||+||+.||.+|+......||+||.+++..++.+|..+.+.|..+
T Consensus 13 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred cCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence 456788999999999999999999999999999999987654699999999998999999998888765
No 140
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.43 E-value=7.2e-14 Score=90.20 Aligned_cols=55 Identities=20% Similarity=0.233 Sum_probs=48.3
Q ss_pred CcccccCCcc-cccCc----eecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCccc
Q 023501 206 DYLCCKITLD-IFRDP----VITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPN 260 (281)
Q Consensus 206 ~~~~c~i~~~-~~~~p----v~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n 260 (281)
+++.||||.+ .+.+| ++++|||+||+.||.+|+..+...||+||.++...++.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 4678999999 99999 5789999999999999987655569999999998888776
No 141
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.43 E-value=2.1e-12 Score=106.34 Aligned_cols=146 Identities=17% Similarity=0.166 Sum_probs=116.5
Q ss_pred chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhh---
Q 023501 9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL--------CPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQL--- 77 (281)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--- 77 (281)
.++..+..+..+|..++..|+|++|+.+|.+++.. .|..+.++.++|.++...|++++|+..+++++.+
T Consensus 38 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 117 (283)
T 3edt_B 38 DHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 117 (283)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34788999999999999999999999999999988 3667889999999999999999999999999998
Q ss_pred -----cCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCC-CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 78 -----DHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGA-KPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSL 151 (281)
Q Consensus 78 -----~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 151 (281)
+|....+++.+|.++..+|++++|+..+++++.+.... +........ .....+......++++++
T Consensus 118 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---------~~~~la~~~~~~g~~~~A 188 (283)
T 3edt_B 118 VLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK---------TKNNLASCYLKQGKYQDA 188 (283)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH---------HHHHHHHHHHHHTCHHHH
T ss_pred HcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH---------HHHHHHHHHHHcCCHHHH
Confidence 57889999999999999999999999999999883110 000001111 222233344556777888
Q ss_pred HHHHHHHHHHhh
Q 023501 152 KEACEAALEEKH 163 (281)
Q Consensus 152 ~~~~~~~l~~~~ 163 (281)
...+.++++..+
T Consensus 189 ~~~~~~~l~~~~ 200 (283)
T 3edt_B 189 ETLYKEILTRAH 200 (283)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888877543
No 142
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.42 E-value=3.7e-12 Score=107.16 Aligned_cols=102 Identities=9% Similarity=-0.017 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHH--HHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHH
Q 023501 13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRA--LCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQ 90 (281)
Q Consensus 13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a--~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~ 90 (281)
....+..+|..+.+.|++++|+..|++++..+|++.......+ ..+...|++++|+..++++++..|.++.+++.+|.
T Consensus 129 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~ 208 (291)
T 3mkr_A 129 SLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAA 208 (291)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 3444555555555555555555555555555554432222211 11122244555555555555555555555555555
Q ss_pred HHHHhcChHHHHHHHHHHHhhccC
Q 023501 91 TLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 91 ~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
++..+|++++|+..|++++.++|+
T Consensus 209 ~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 209 CHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC
Confidence 555555555555555555555444
No 143
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.42 E-value=6.7e-12 Score=94.36 Aligned_cols=143 Identities=15% Similarity=0.151 Sum_probs=113.0
Q ss_pred chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc-
Q 023501 9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV------PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS- 81 (281)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~- 81 (281)
.+...+..+..+|..++..|+|++|+.+|.+++...+.. ..++.++|.++...|++++|+..+++++.+.+..
T Consensus 4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 83 (164)
T 3ro3_A 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 83 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 356678899999999999999999999999999986543 2589999999999999999999999999987653
Q ss_pred -----hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 82 -----VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACE 156 (281)
Q Consensus 82 -----~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (281)
..+++.+|.++..+|++++|+..+++++.+.+..... ..........+......++..++...+.
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----------~~~~~~~~~la~~~~~~g~~~~A~~~~~ 153 (164)
T 3ro3_A 84 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR----------IGEGRACWSLGNAYTALGNHDQAMHFAE 153 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccch----------HhHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 6789999999999999999999999999886543221 1111222333444455667777777777
Q ss_pred HHHHH
Q 023501 157 AALEE 161 (281)
Q Consensus 157 ~~l~~ 161 (281)
++++.
T Consensus 154 ~a~~~ 158 (164)
T 3ro3_A 154 KHLEI 158 (164)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 144
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.42 E-value=2.9e-13 Score=105.04 Aligned_cols=137 Identities=12% Similarity=-0.029 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHH
Q 023501 11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQ 90 (281)
Q Consensus 11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~ 90 (281)
+...+.+..+|..++..|++++|+..|++++..+|+++.++.++|.++...|++++|+..+++++.++| ++..+..++.
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~ 81 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAK 81 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHH
Confidence 344566889999999999999999999999999999999999999999999999999999999999999 8877776665
Q ss_pred HHH-HhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023501 91 TLL-QRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHV 164 (281)
Q Consensus 91 ~~~-~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (281)
+.. ..+...+|+..++++++++|+... .....+......+++.++...+.++++..|.
T Consensus 82 ~~~~~~~~~~~a~~~~~~al~~~P~~~~----------------~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 140 (176)
T 2r5s_A 82 LELHQQAAESPELKRLEQELAANPDNFE----------------LACELAVQYNQVGRDEEALELLWNILKVNLG 140 (176)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHSTTCHH----------------HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHhhcccchHHHHHHHHHHhCCCCHH----------------HHHHHHHHHHHcccHHHHHHHHHHHHHhCcc
Confidence 533 334555689999999999887322 2223333445567888888888888887654
No 145
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.42 E-value=2.8e-14 Score=106.50 Aligned_cols=68 Identities=15% Similarity=0.170 Sum_probs=57.6
Q ss_pred CCCCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcC---------CCCCcccHHHHHHHHHH
Q 023501 203 EVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLR---------ESQLVPNLAIKEAVRAY 270 (281)
Q Consensus 203 ~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~---------~~~~~~n~~l~~~i~~~ 270 (281)
.++..+.||||..+|.+||+++|||+||+.||.+|+..+...||+||.++. ...+.++..+.+.|..+
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L 103 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESL 103 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTS
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHccc
Confidence 456789999999999999999999999999999999866546999998753 33577998888887754
No 146
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.41 E-value=2.2e-12 Score=108.37 Aligned_cols=105 Identities=13% Similarity=0.025 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchh--
Q 023501 13 QAEQLRLDGNYYFSK-DRYGAAIDAYTEAITLCPNV------PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVK-- 83 (281)
Q Consensus 13 ~a~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~-- 83 (281)
.+..+..+|..+... |++++|+.+|++|+.+.|.+ +.++.++|.++..+|+|++|+..+++++++.|.+..
T Consensus 116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 195 (292)
T 1qqe_A 116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ 195 (292)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTG
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCccc
Confidence 477899999999996 99999999999999998754 578999999999999999999999999999987653
Q ss_pred -----HHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501 84 -----GHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP 117 (281)
Q Consensus 84 -----a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~ 117 (281)
+++.+|.++..+|++++|+..|++++.++|....
T Consensus 196 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 196 WSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 6789999999999999999999999999887443
No 147
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.41 E-value=9.8e-13 Score=91.75 Aligned_cols=92 Identities=16% Similarity=0.051 Sum_probs=84.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhc
Q 023501 18 RLDGNYYFSKDRYGAAIDAYTEAITLCPNVPI-YWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRN 96 (281)
Q Consensus 18 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g 96 (281)
..+|..++..|+|++|+..|++++..+|+++. ++.++|.+|..+|++++|+..++++++++|++..++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 56899999999999999999999999999999 99999999999999999999999999999999988754 6
Q ss_pred ChHHHHHHHHHHHhhccCCCC
Q 023501 97 EYADGIKELEKALNLGRGAKP 117 (281)
Q Consensus 97 ~~~~A~~~~~kal~~~p~~~~ 117 (281)
.+.+++..|.+++..+|++..
T Consensus 76 ~~~~a~~~~~~~~~~~p~~~~ 96 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEHHH 96 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCCSS
T ss_pred HHHHHHHHHHHHhccCccccc
Confidence 688899999999988887543
No 148
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.41 E-value=5.7e-12 Score=103.70 Aligned_cols=104 Identities=21% Similarity=0.241 Sum_probs=98.1
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhh----
Q 023501 10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL--------CPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQL---- 77 (281)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l---- 77 (281)
++..+..+..+|..++..|++++|+.+|.+++.. .|....++.++|.++..+|++++|+..+++++++
T Consensus 81 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 160 (283)
T 3edt_B 81 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR 160 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 5788999999999999999999999999999998 4777899999999999999999999999999999
Q ss_pred ----cCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhcc
Q 023501 78 ----DHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGR 113 (281)
Q Consensus 78 ----~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p 113 (281)
+|....++..+|.++..+|++++|+..+++++.+.+
T Consensus 161 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 200 (283)
T 3edt_B 161 LGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAH 200 (283)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 788899999999999999999999999999998854
No 149
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.40 E-value=2.8e-12 Score=92.55 Aligned_cols=86 Identities=15% Similarity=0.039 Sum_probs=79.4
Q ss_pred hhhhhhc---hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC
Q 023501 3 LEAGLAG---VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDH 79 (281)
Q Consensus 3 l~~~~~~---~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p 79 (281)
+++++.. +|+.+..+..+|..++..|+|++|+..|+++++.+|+++.++.++|.++..+|++++|+..+++++.++|
T Consensus 13 ~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 92 (117)
T 3k9i_A 13 YEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETS 92 (117)
T ss_dssp HHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4566666 6999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHH
Q 023501 80 DSVKGHYLL 88 (281)
Q Consensus 80 ~~~~a~~~l 88 (281)
.++......
T Consensus 93 ~~~~~~~~~ 101 (117)
T 3k9i_A 93 DDETIQSYK 101 (117)
T ss_dssp CCHHHHHTH
T ss_pred CcHHHHHHH
Confidence 998765433
No 150
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.40 E-value=4.6e-12 Score=107.17 Aligned_cols=144 Identities=10% Similarity=-0.014 Sum_probs=119.0
Q ss_pred hhhhhhh-chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHHhcCHHHHHHHHHHHHhhcC
Q 023501 2 VLEAGLA-GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPI-YWTNRALCHLKRNDWTKVEADCRKAIQLDH 79 (281)
Q Consensus 2 ~l~~~~~-~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~l~p 79 (281)
++++++. ..|+.+..+..+|..+...|++++|+..|++++...|.++. +|.++|.++...|++++|...+++|++++|
T Consensus 86 ~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 165 (308)
T 2ond_A 86 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR 165 (308)
T ss_dssp HHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 3566777 58899999999999999999999999999999999999987 999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHH-hcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 80 DSVKGHYLLGQTLLQ-RNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAA 158 (281)
Q Consensus 80 ~~~~a~~~la~~~~~-~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (281)
.+..++...+..... .|++++|...|++++++.|+.. .++.. .+....+.++.+++...++++
T Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~---------~~~~~~~~g~~~~A~~~~~~a 229 (308)
T 2ond_A 166 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP-------EYVLA---------YIDYLSHLNEDNNTRVLFERV 229 (308)
T ss_dssp CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCH-------HHHHH---------HHHHHHTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-------HHHHH---------HHHHHHHCCCHHHHHHHHHHH
Confidence 998888766666443 7999999999999999988621 22221 122233446777788888888
Q ss_pred HHH
Q 023501 159 LEE 161 (281)
Q Consensus 159 l~~ 161 (281)
+..
T Consensus 230 l~~ 232 (308)
T 2ond_A 230 LTS 232 (308)
T ss_dssp HHS
T ss_pred Hhc
Confidence 874
No 151
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.39 E-value=5.3e-11 Score=103.89 Aligned_cols=104 Identities=17% Similarity=0.195 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch----HHHHHHHHHHHHhcCHHHHHHHHHHHHhh------cCc
Q 023501 11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVP----IYWTNRALCHLKRNDWTKVEADCRKAIQL------DHD 80 (281)
Q Consensus 11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~l------~p~ 80 (281)
+..+..+..+|..++..|+|++|+.+|++++...|+++ .++..+|.+|..+|++++|+..+++++++ +|.
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 57788889999999999999999999999999999986 68999999999999999999999999998 688
Q ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 81 SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 81 ~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
...+++.+|.++..+|++++|+..+.+++.+.+.
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 158 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQ 158 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999998544
No 152
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.39 E-value=4.5e-13 Score=120.48 Aligned_cols=114 Identities=12% Similarity=0.156 Sum_probs=101.8
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV 82 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 82 (281)
+++++...|+.+..+..+|..++..|+|++|+..|++|++++|+++.++.++|.+|..+|++++|+..+++|++++|++.
T Consensus 29 ~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 108 (477)
T 1wao_1 29 YSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 108 (477)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCT
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 45677778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHH--HHHhcChHHHHHHHH-----------HHHhhccCCC
Q 023501 83 KGHYLLGQT--LLQRNEYADGIKELE-----------KALNLGRGAK 116 (281)
Q Consensus 83 ~a~~~la~~--~~~~g~~~~A~~~~~-----------kal~~~p~~~ 116 (281)
.++..++.+ +...|++++|+..++ +++.+.|...
T Consensus 109 ~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~ 155 (477)
T 1wao_1 109 DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYS 155 (477)
T ss_dssp THHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccc
Confidence 999999999 889999999999999 8888877643
No 153
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.38 E-value=3.7e-12 Score=92.43 Aligned_cols=96 Identities=19% Similarity=0.132 Sum_probs=89.9
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV 82 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 82 (281)
++.++...|..+..+..+|..++..|++++|+..|.+++...|+++.++..+|.++..+|++++|+..++++++++|.+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 114 (131)
T 2vyi_A 35 YGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNE 114 (131)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccch
Confidence 44555666778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCh
Q 023501 83 KGHYLLGQTLLQRNEY 98 (281)
Q Consensus 83 ~a~~~la~~~~~~g~~ 98 (281)
.+++.+|.++..+|++
T Consensus 115 ~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 115 TYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999999876
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.38 E-value=3.5e-12 Score=93.00 Aligned_cols=92 Identities=13% Similarity=0.065 Sum_probs=85.6
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc----
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD---- 78 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~---- 78 (281)
++.++...|+.+..+..+|..++..|+|++|+..|++++.++|+++.++.++|.++..+|++++|+..++++++++
T Consensus 27 ~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 106 (126)
T 3upv_A 27 YTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN 106 (126)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccC
Confidence 4567777888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --CcchhHHHHHHHHHHH
Q 023501 79 --HDSVKGHYLLGQTLLQ 94 (281)
Q Consensus 79 --p~~~~a~~~la~~~~~ 94 (281)
|.+..++..++.+...
T Consensus 107 ~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 107 NGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp TTTTHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHh
Confidence 8888888888877654
No 155
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.38 E-value=3.8e-12 Score=92.92 Aligned_cols=95 Identities=18% Similarity=0.181 Sum_probs=89.5
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV 82 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 82 (281)
++.++...|..+..+..+|..++..|++++|+.+|.+++..+|.++.++.++|.++..+|++++|+..++++++++|.+.
T Consensus 39 ~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 118 (133)
T 2lni_A 39 YTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK 118 (133)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGT
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCch
Confidence 45666777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcC
Q 023501 83 KGHYLLGQTLLQRNE 97 (281)
Q Consensus 83 ~a~~~la~~~~~~g~ 97 (281)
.+++.+|.++..+|+
T Consensus 119 ~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 119 EAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999998774
No 156
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.38 E-value=1.8e-11 Score=102.88 Aligned_cols=134 Identities=10% Similarity=0.052 Sum_probs=105.7
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHH
Q 023501 10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLG 89 (281)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la 89 (281)
.|+++..+..+|..+...|++++|+..|.+ |.+..++..+|.++.++|++++|+..++++++++|++.......|
T Consensus 97 ~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a 171 (291)
T 3mkr_A 97 DVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATA 171 (291)
T ss_dssp CCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHH
Confidence 477889999999999999999999999987 899999999999999999999999999999999998765444333
Q ss_pred --HHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023501 90 --QTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHV 164 (281)
Q Consensus 90 --~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (281)
..+...|++++|+..|+++++..|.... + ....+....+.+++.++...++++++..|.
T Consensus 172 ~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~-------~---------~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 172 WVSLAAGGEKLQDAYYIFQEMADKCSPTLL-------L---------LNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHHSCCCHH-------H---------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhCchHHHHHHHHHHHHHHhCCCcHH-------H---------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3334458999999999999999776211 1 122233344557777777778887777664
No 157
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.37 E-value=1.5e-11 Score=96.65 Aligned_cols=143 Identities=15% Similarity=0.103 Sum_probs=113.8
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhh------
Q 023501 10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL------CPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQL------ 77 (281)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l------ 77 (281)
+...+..+..+|..++..|+|++|+.+|.+++.. .|..+.++.++|.++..+|++++|+..+++++.+
T Consensus 22 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 101 (203)
T 3gw4_A 22 PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPE 101 (203)
T ss_dssp TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCc
Confidence 3467889999999999999999999999999994 4556789999999999999999999999999998
Q ss_pred cC-cchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 78 DH-DSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACE 156 (281)
Q Consensus 78 ~p-~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (281)
+| ....+++.+|.++..+|++++|+..+.+++.+.+..+.. . ..+......+......+++.++...+.
T Consensus 102 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~-------~~~~~~~~la~~~~~~g~~~~A~~~~~ 171 (203)
T 3gw4_A 102 DPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQ---V-------AIACAFRGLGDLAQQEKNLLEAQQHWL 171 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH---H-------HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccch---H-------HHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 33 346789999999999999999999999999886543331 1 111122333444455677788888888
Q ss_pred HHHHHh
Q 023501 157 AALEEK 162 (281)
Q Consensus 157 ~~l~~~ 162 (281)
+++...
T Consensus 172 ~al~~~ 177 (203)
T 3gw4_A 172 RARDIF 177 (203)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887753
No 158
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.37 E-value=3.5e-12 Score=97.56 Aligned_cols=93 Identities=13% Similarity=0.149 Sum_probs=85.7
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501 2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS 81 (281)
Q Consensus 2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 81 (281)
.++.++...|..+..+..+|..++..|+|++|+..|.+++.++|+++.+|+++|.+|..+|++++|+..++++++++|++
T Consensus 33 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 112 (164)
T 3sz7_A 33 LYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNG 112 (164)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 35567777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHH
Q 023501 82 VKGHYLLGQTLLQ 94 (281)
Q Consensus 82 ~~a~~~la~~~~~ 94 (281)
..+++.++.....
T Consensus 113 ~~~~~~~~l~~~~ 125 (164)
T 3sz7_A 113 GSDAMKRGLETTK 125 (164)
T ss_dssp CCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 9988887766543
No 159
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.36 E-value=2.4e-13 Score=89.37 Aligned_cols=56 Identities=20% Similarity=0.336 Sum_probs=50.2
Q ss_pred CCCcccccCCcccccCc-------eecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCccc
Q 023501 204 VPDYLCCKITLDIFRDP-------VITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPN 260 (281)
Q Consensus 204 ~p~~~~c~i~~~~~~~p-------v~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n 260 (281)
....+.|+||.+.+.+| ++++|||+||+.||.+|+.... .||+||.++...++.++
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~~~~~~ 69 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHKRYHPI 69 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCS-BCTTTCCBCCCCSCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCC-CCCCCCCccChhheeec
Confidence 45678999999999998 8899999999999999998776 59999999998888775
No 160
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=7.2e-13 Score=84.88 Aligned_cols=48 Identities=21% Similarity=0.263 Sum_probs=41.6
Q ss_pred CCCCCCcccccCCcccccCceecCCCcccccchHHhHhcc--CCCCCCCC
Q 023501 201 PAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDK--VGKFDPIT 248 (281)
Q Consensus 201 ~~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~--~~~~cP~~ 248 (281)
...+...+.||||.+.+.+||+++|||+||+.||.+|+.. ....||+|
T Consensus 14 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3456678999999999999999999999999999999984 33369987
No 161
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.36 E-value=5.7e-12 Score=96.17 Aligned_cols=89 Identities=11% Similarity=-0.002 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch-hHHHHH
Q 023501 10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV-KGHYLL 88 (281)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~-~a~~~l 88 (281)
.+..+..+..+|..+++.|+|++|+..|++++.++|+++.+|+.+|.+|..+|++++|+.+++++++++|++. .....+
T Consensus 59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l 138 (162)
T 3rkv_A 59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREM 138 (162)
T ss_dssp HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 6778899999999999999999999999999999999999999999999999999999999999999999998 667777
Q ss_pred HHHHHHhcCh
Q 023501 89 GQTLLQRNEY 98 (281)
Q Consensus 89 a~~~~~~g~~ 98 (281)
+.+...++++
T Consensus 139 ~~~~~~~~~~ 148 (162)
T 3rkv_A 139 KIVTERRAEK 148 (162)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7766655543
No 162
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.35 E-value=6.5e-12 Score=88.15 Aligned_cols=72 Identities=22% Similarity=0.262 Sum_probs=58.5
Q ss_pred hCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 43 LCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 43 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
.+|+++.+++++|.+|+.+|++++|+..++++++++|+++.+++.+|.++..+|++++|+..|++++++.|.
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 367888888888888888888888888888888888888888888888888888888888888888888665
No 163
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=2.3e-13 Score=89.39 Aligned_cols=52 Identities=15% Similarity=0.082 Sum_probs=46.0
Q ss_pred CCCCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCC
Q 023501 203 EVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRES 255 (281)
Q Consensus 203 ~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~ 255 (281)
.....+.|+||.+.+.+||+++|||+||..||..|+..+. .||+||.++...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~-~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGK-RCALCRQEIPED 62 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSS-BCSSSCCBCCHH
T ss_pred cCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCC-cCcCcCchhCHh
Confidence 3456789999999999999999999999999999998775 599999998754
No 164
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.34 E-value=2.2e-11 Score=108.34 Aligned_cols=108 Identities=19% Similarity=0.078 Sum_probs=92.4
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC-
Q 023501 10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL---------CPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDH- 79 (281)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p- 79 (281)
.+..+..+..+|.+++..|+|++|+.+|++|+++ +|.....|.|+|.+|..+|++++|+.++++++++.+
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 3455778889999999999999999999999987 567788999999999999999999999999998753
Q ss_pred -------cchhHHHHHHHHHHHhc--ChHHHHHHHHHHHhhccCCCC
Q 023501 80 -------DSVKGHYLLGQTLLQRN--EYADGIKELEKALNLGRGAKP 117 (281)
Q Consensus 80 -------~~~~a~~~la~~~~~~g--~~~~A~~~~~kal~~~p~~~~ 117 (281)
..+..+..+|.++...| +|++|+..|++++.++|++..
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~ 173 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPE 173 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHH
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHH
Confidence 45678888998887765 699999999999999887443
No 165
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.34 E-value=2e-10 Score=96.51 Aligned_cols=106 Identities=15% Similarity=0.213 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc----hHHHHHHHHHHHHhcCHHHHHHHHHHHHhh------cCcc
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV----PIYWTNRALCHLKRNDWTKVEADCRKAIQL------DHDS 81 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l------~p~~ 81 (281)
.....+...|..++..|+|++|+.+|++++...|.+ +.++..+|.++...|++++|+..+++++.+ .|..
T Consensus 3 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (338)
T 3ro2_A 3 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 82 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHH
Confidence 456678899999999999999999999999999998 578999999999999999999999999988 5667
Q ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501 82 VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP 117 (281)
Q Consensus 82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~ 117 (281)
..++..+|.++..+|++++|+..+.+++.+.+...+
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 118 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND 118 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Confidence 889999999999999999999999999999776433
No 166
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.34 E-value=2e-11 Score=106.17 Aligned_cols=105 Identities=14% Similarity=0.144 Sum_probs=87.0
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-------chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc-
Q 023501 10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN-------VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS- 81 (281)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~- 81 (281)
++..+..+..+|..++..|++++|+.+|.+|+.+.+. .+.++.++|.+|..+|++++|+..+++|+++.+..
T Consensus 139 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 218 (383)
T 3ulq_A 139 RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK 218 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC
Confidence 5667888899999999999999999999999887443 35688889999999999999999999998886543
Q ss_pred -----hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 82 -----VKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 82 -----~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
..+++.+|.++..+|++++|+..+++++.+.+.
T Consensus 219 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 256 (383)
T 3ulq_A 219 QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEE 256 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 358888999999999999999999999886543
No 167
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.33 E-value=3.6e-11 Score=100.49 Aligned_cols=145 Identities=17% Similarity=0.097 Sum_probs=115.4
Q ss_pred hhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhh-
Q 023501 7 LAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL--------CPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQL- 77 (281)
Q Consensus 7 ~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l- 77 (281)
....|..+..+..+|..++..|+|++|+.+|.+++.+ .|..+.++..+|.++...|++++|+..+++++.+
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 99 (311)
T 3nf1_A 20 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR 99 (311)
T ss_dssp CTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999999999999995 6778899999999999999999999999999988
Q ss_pred -------cCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCC--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 78 -------DHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGA--KPKGYIVEDIWQELARAKYLLWEQESSKRSWEL 148 (281)
Q Consensus 78 -------~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 148 (281)
+|....+++.+|.++..+|++++|+..+.+++.+.... ... ..... .....+......+++
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~---------~~~~la~~~~~~~~~ 169 (311)
T 3nf1_A 100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH-PDVAK---------QLNNLALLCQNQGKY 169 (311)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC-HHHHH---------HHHHHHHHHHTTTCH
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC-hHHHH---------HHHHHHHHHHHcCCH
Confidence 47778999999999999999999999999999884110 000 00111 122223334455667
Q ss_pred HHHHHHHHHHHHH
Q 023501 149 QSLKEACEAALEE 161 (281)
Q Consensus 149 ~~~~~~~~~~l~~ 161 (281)
.++...+.+++..
T Consensus 170 ~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 170 EEVEYYYQRALEI 182 (311)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777765
No 168
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.33 E-value=7e-12 Score=98.96 Aligned_cols=98 Identities=10% Similarity=-0.001 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHH
Q 023501 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLL 93 (281)
Q Consensus 14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~ 93 (281)
+..+..+|..++..|+|++|+.+|.+++..+|+++.+++++|.+|..+|++++|+..++++++++|.+..++..++.++.
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcChHHHH-HHHHHHHhh
Q 023501 94 QRNEYADGI-KELEKALNL 111 (281)
Q Consensus 94 ~~g~~~~A~-~~~~kal~~ 111 (281)
.+++..++. ..+.+.+..
T Consensus 168 ~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 168 KLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 999988887 555555443
No 169
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.5e-12 Score=89.29 Aligned_cols=63 Identities=25% Similarity=0.352 Sum_probs=51.6
Q ss_pred CCCCCCCcccccCCcccccC----ceecCCCcccccchHHhHhccC--CCCCCCCCCCcCCC---CCcccHH
Q 023501 200 TPAEVPDYLCCKITLDIFRD----PVITPSGVTYERAVILDHLDKV--GKFDPITREPLRES---QLVPNLA 262 (281)
Q Consensus 200 ~~~~~p~~~~c~i~~~~~~~----pv~~~~g~~~~~~~i~~~~~~~--~~~cP~~~~~~~~~---~~~~n~~ 262 (281)
....+...+.||||.+.+.+ |++++|||+||+.||.+|+... ...||+||.++... .+..|+.
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l~~n~~ 79 (88)
T 2ct2_A 8 NLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQLTDNLT 79 (88)
T ss_dssp SCCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTSEECTT
T ss_pred ChhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHHHHHHH
Confidence 34556678999999999999 9999999999999999999875 33699999998754 4555543
No 170
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.33 E-value=3.7e-12 Score=96.21 Aligned_cols=81 Identities=14% Similarity=0.097 Sum_probs=74.4
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc----------
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRY----------GAAIDAYTEAITLCPNVPIYWTNRALCHLKRN---------- 62 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~---------- 62 (281)
++.++...|+.++.+..+|.++...+++ ++|+..|++||+++|+++.+|+++|.+|..+|
T Consensus 25 ~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~ 104 (158)
T 1zu2_A 25 AENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAK 104 (158)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhh
Confidence 4567778899999999999999998876 59999999999999999999999999999885
Q ss_pred -CHHHHHHHHHHHHhhcCcchh
Q 023501 63 -DWTKVEADCRKAIQLDHDSVK 83 (281)
Q Consensus 63 -~~~~A~~~~~~al~l~p~~~~ 83 (281)
++++|+..|++|++++|++..
T Consensus 105 g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 105 HNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHH
Confidence 899999999999999999753
No 171
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.32 E-value=9.1e-12 Score=111.39 Aligned_cols=97 Identities=11% Similarity=0.138 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHH
Q 023501 13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTL 92 (281)
Q Consensus 13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~ 92 (281)
.+..+.++|..+++.|+|++|+.+|++++.++|+++.+|+++|.+|..+|+|++|+.++++|++++|++..++..++.++
T Consensus 316 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcChHHHHHH-HHHHH
Q 023501 93 LQRNEYADGIKE-LEKAL 109 (281)
Q Consensus 93 ~~~g~~~~A~~~-~~kal 109 (281)
..++++++|... +.+.+
T Consensus 396 ~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 396 KKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999988744 44333
No 172
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.32 E-value=2.5e-10 Score=98.96 Aligned_cols=104 Identities=15% Similarity=0.217 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc----hHHHHHHHHHHHHhcCHHHHHHHHHHHHhh------cCcc
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV----PIYWTNRALCHLKRNDWTKVEADCRKAIQL------DHDS 81 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l------~p~~ 81 (281)
..+..+...|..++..|+|++|+.+|++++...|.+ +.++..+|.++...|++++|+..+++++.+ .|..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 456788999999999999999999999999999998 468999999999999999999999999988 4667
Q ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501 82 VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGA 115 (281)
Q Consensus 82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~ 115 (281)
..+++.+|.++..+|++++|+..+.+++.+.|..
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 120 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL 120 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Confidence 8899999999999999999999999999997753
No 173
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.32 E-value=6e-11 Score=99.09 Aligned_cols=145 Identities=17% Similarity=0.188 Sum_probs=113.6
Q ss_pred chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc--
Q 023501 9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL--------CPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD-- 78 (281)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-- 78 (281)
..+..+..+..+|..++..|++++|+.+|.+++.. .|..+.++.++|.++..+|++++|+..+++++++.
T Consensus 64 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 143 (311)
T 3nf1_A 64 DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 143 (311)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999988 35678899999999999999999999999999884
Q ss_pred ------CcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 79 ------HDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAK-PKGYIVEDIWQELARAKYLLWEQESSKRSWELQSL 151 (281)
Q Consensus 79 ------p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 151 (281)
|....++..+|.++...|++++|+..+++++.+..... ........+ ....+......++++++
T Consensus 144 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~---------~~~la~~~~~~g~~~~A 214 (311)
T 3nf1_A 144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKT---------KNNLASCYLKQGKFKQA 214 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHH---------HHHHHHHHHHHTCHHHH
T ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHH---------HHHHHHHHHHcCCHHHH
Confidence 67788999999999999999999999999998832210 000011111 22223334455667777
Q ss_pred HHHHHHHHHHh
Q 023501 152 KEACEAALEEK 162 (281)
Q Consensus 152 ~~~~~~~l~~~ 162 (281)
...+.+++...
T Consensus 215 ~~~~~~al~~~ 225 (311)
T 3nf1_A 215 ETLYKEILTRA 225 (311)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777777643
No 174
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.31 E-value=6.8e-11 Score=105.19 Aligned_cols=112 Identities=17% Similarity=0.204 Sum_probs=92.5
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh-------------------cC
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKR-------------------ND 63 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~-------------------~~ 63 (281)
++++....|..+..+..+|..+...|++++|+..|.++++.+|+++.++.++|.+|... +.
T Consensus 236 ~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~ 315 (472)
T 4g1t_A 236 VEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLEL 315 (472)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHH
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Confidence 44555666777888888888888888888888888888888888888888888887543 34
Q ss_pred HHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 64 WTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 64 ~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
++.|+..++++++++|.+..+++.+|.++..+|++++|+..|++++.+.|.
T Consensus 316 ~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~ 366 (472)
T 4g1t_A 316 IGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366 (472)
T ss_dssp HHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 677888888888888888888888899999999999999999998888654
No 175
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.30 E-value=6.4e-11 Score=103.39 Aligned_cols=143 Identities=15% Similarity=0.165 Sum_probs=116.8
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch------HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc--
Q 023501 10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVP------IYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS-- 81 (281)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-- 81 (281)
.+..+..+..+|..++..|+|++|+.+|.+++.+.+... .++.++|.+|..+|++++|+..+++++.+.|..
T Consensus 219 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 298 (411)
T 4a1s_A 219 RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGE 298 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC
Confidence 456677899999999999999999999999999877643 389999999999999999999999999998754
Q ss_pred ----hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 82 ----VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEA 157 (281)
Q Consensus 82 ----~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (281)
..++..+|.++..+|++++|+..+++++.+.+..... ..........+......++..++...+.+
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 299 REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR----------IGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh----------HHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 7899999999999999999999999999996543221 11222333344455566788888888888
Q ss_pred HHHHh
Q 023501 158 ALEEK 162 (281)
Q Consensus 158 ~l~~~ 162 (281)
+++..
T Consensus 369 al~~~ 373 (411)
T 4a1s_A 369 HLQLA 373 (411)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 88753
No 176
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.30 E-value=2.1e-11 Score=85.44 Aligned_cols=87 Identities=9% Similarity=0.007 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch--hHHHH
Q 023501 10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV--KGHYL 87 (281)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~--~a~~~ 87 (281)
+|+.+..+..+|..++..|+|++|+..|+++++.+|+++.+|.++|.+|..+|++++|+..+++++++.|.+. .+...
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~ 82 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE 82 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence 5778899999999999999999999999999999999999999999999999999999999999999987543 33344
Q ss_pred HHHHHHHhc
Q 023501 88 LGQTLLQRN 96 (281)
Q Consensus 88 la~~~~~~g 96 (281)
+..++...+
T Consensus 83 l~~~l~~~~ 91 (100)
T 3ma5_A 83 LQDAKLKAE 91 (100)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHcc
Confidence 444444433
No 177
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.29 E-value=3.3e-12 Score=109.78 Aligned_cols=103 Identities=14% Similarity=0.030 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHH-H
Q 023501 15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTL-L 93 (281)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~-~ 93 (281)
..+.++|..+++.|+|++|+.+|++++.++|+++.+|+++|.+|..+|+|++|+.+++++++++|.+..++..++.+. .
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999999984 4
Q ss_pred HhcChHHHHHHHHHHHhhccCCCC
Q 023501 94 QRNEYADGIKELEKALNLGRGAKP 117 (281)
Q Consensus 94 ~~g~~~~A~~~~~kal~~~p~~~~ 117 (281)
..+..+++...|.+++...|.+..
T Consensus 311 ~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 311 EKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCC
Confidence 556788889999999999887443
No 178
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.29 E-value=2.8e-10 Score=95.43 Aligned_cols=139 Identities=12% Similarity=0.049 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHhcCHHHHHHHHHHHHh---hcCcc--
Q 023501 13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV------PIYWTNRALCHLKRNDWTKVEADCRKAIQ---LDHDS-- 81 (281)
Q Consensus 13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~---l~p~~-- 81 (281)
....+..+|..+...|+|++|+.+|.+++...+.. +.++.++|.+|..+|+|++|+..+++|++ ..|.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~ 193 (293)
T 2qfc_A 114 FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEE 193 (293)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcccc
Confidence 34456678888899999999999999999875543 56899999999999999999999999994 44543
Q ss_pred --hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 023501 82 --VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSL-KEACEAA 158 (281)
Q Consensus 82 --~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 158 (281)
..+++.+|.+|..+|++++|+..+++++.+.+.... ......+...++. .....++++++ ...+.++
T Consensus 194 ~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~-~~~~~~~~~~lg~---------~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 194 FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS-MALIGQLYYQRGE---------CLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB-CSSHHHHHHHHHH---------HHHHTTCCHHHHHHHHHHH
T ss_pred chHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHH---------HHHHcCCcHHHHHHHHHHH
Confidence 268999999999999999999999999998654222 2223333333333 33344555556 5556666
Q ss_pred HHH
Q 023501 159 LEE 161 (281)
Q Consensus 159 l~~ 161 (281)
+..
T Consensus 264 l~~ 266 (293)
T 2qfc_A 264 SFF 266 (293)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 179
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.29 E-value=9e-11 Score=101.99 Aligned_cols=135 Identities=14% Similarity=0.145 Sum_probs=108.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh---CCC---chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC-------cchh
Q 023501 17 LRLDGNYYFSKDRYGAAIDAYTEAITL---CPN---VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDH-------DSVK 83 (281)
Q Consensus 17 ~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p-------~~~~ 83 (281)
++.+|..++..|+|++|+.+|.+|+.+ .++ .+.++.++|.+|..+|++++|+..+++|+++.+ ....
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 445999999999999999999999987 233 568999999999999999999999999999854 3456
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 84 GHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEE 161 (281)
Q Consensus 84 a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (281)
++..+|.++..+|++++|+..|.+++.+.+..++. . ..+......+......++++++...+.+++..
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~-------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 253 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQP---Q-------LMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV 253 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---H-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCCh---H-------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999999999997764331 1 11112233444445667888888888888874
No 180
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.29 E-value=3.4e-11 Score=104.73 Aligned_cols=96 Identities=16% Similarity=0.069 Sum_probs=91.8
Q ss_pred chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHH
Q 023501 9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLL 88 (281)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (281)
..+..+..+.++|..+++.|+|++|+.+|+++++++|+++.+++++|.+|..+|++++|+.++++|++++|.+..++..+
T Consensus 268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l 347 (370)
T 1ihg_A 268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL 347 (370)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcChHHHHHH
Q 023501 89 GQTLLQRNEYADGIKE 104 (281)
Q Consensus 89 a~~~~~~g~~~~A~~~ 104 (281)
+.++..+++++++...
T Consensus 348 ~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 348 LKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998887654
No 181
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.29 E-value=5.2e-11 Score=86.58 Aligned_cols=99 Identities=14% Similarity=0.016 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHH
Q 023501 49 IYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQE 128 (281)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~ 128 (281)
..++.+|.++...|++++|+..++++++++|+++.+++.+|.++..+|++++|+..|+++++++|+... .
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~-------~--- 87 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA-------V--- 87 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-------H---
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------H---
Confidence 457889999999999999999999999999999999999999999999999999999999999887322 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023501 129 LARAKYLLWEQESSKRSWELQSLKEACEAALEEKH 163 (281)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (281)
....+......++..++...++++++..+
T Consensus 88 ------~~~la~~~~~~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 88 ------HAALAVSHTNEHNANAALASLRAWLLSQP 116 (121)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred ------HHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 22233334456777888888888876544
No 182
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=3.1e-12 Score=80.45 Aligned_cols=48 Identities=19% Similarity=0.345 Sum_probs=41.0
Q ss_pred CCCCCCcccccCCcccccCceecCCCcccccchHHhHhcc--CCCCCCCC
Q 023501 201 PAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDK--VGKFDPIT 248 (281)
Q Consensus 201 ~~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~--~~~~cP~~ 248 (281)
...+...+.|+||.+.+.+||+++|||+||+.||.+|+.. ....||+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 9 LENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3455678899999999999999999999999999999754 33469987
No 183
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.28 E-value=3.4e-11 Score=101.82 Aligned_cols=141 Identities=9% Similarity=0.016 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc---
Q 023501 11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN------VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS--- 81 (281)
Q Consensus 11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~--- 81 (281)
...+..+..+|..+...|+|++|+.+|.+|+.+.+. .+.++.++|.+|.. |++++|+..+++|+.+.|..
T Consensus 73 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~ 151 (307)
T 2ifu_A 73 FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERL 151 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCh
Confidence 455778889999999999999999999999988432 25688899999988 99999999999999988753
Q ss_pred ---hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 82 ---VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAA 158 (281)
Q Consensus 82 ---~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (281)
..++..+|.++..+|++++|+..|++++.+.|..... . ................+++.++...++++
T Consensus 152 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~-------~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 152 RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENY---P-------TCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---H-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh---h-------HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5788899999999999999999999999987764331 1 11112222333334456777788888887
Q ss_pred HHHhh
Q 023501 159 LEEKH 163 (281)
Q Consensus 159 l~~~~ 163 (281)
+ ..+
T Consensus 222 l-~~p 225 (307)
T 2ifu_A 222 Y-SIP 225 (307)
T ss_dssp T-TST
T ss_pred h-CCC
Confidence 7 554
No 184
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.28 E-value=7.4e-13 Score=85.10 Aligned_cols=53 Identities=21% Similarity=0.374 Sum_probs=47.4
Q ss_pred cccccCCcccccCc-------eecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCccc
Q 023501 207 YLCCKITLDIFRDP-------VITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPN 260 (281)
Q Consensus 207 ~~~c~i~~~~~~~p-------v~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n 260 (281)
.+.||||.+.+.+| ++++|||+||+.||.+|+..+. .||+||.++...++.++
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHKRYHPI 62 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCS-BCTTTCCBCTTTCEEEC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCC-CCCCCCccCCccceeee
Confidence 57899999999988 7899999999999999998766 59999999998777765
No 185
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.28 E-value=4.5e-11 Score=85.81 Aligned_cols=94 Identities=26% Similarity=0.370 Sum_probs=86.5
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV 82 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 82 (281)
++.+....|..+..+..+|..++..|++++|+..|.+++...|.++.++.++|.++...|++++|+..++++++++|.++
T Consensus 32 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 111 (125)
T 1na0_A 32 YQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 111 (125)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH
Confidence 34455556677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhc
Q 023501 83 KGHYLLGQTLLQRN 96 (281)
Q Consensus 83 ~a~~~la~~~~~~g 96 (281)
.++..+|.++...|
T Consensus 112 ~~~~~l~~~~~~~g 125 (125)
T 1na0_A 112 EAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999988765
No 186
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.28 E-value=7.5e-11 Score=102.27 Aligned_cols=143 Identities=14% Similarity=0.129 Sum_probs=116.9
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch------HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc--
Q 023501 10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVP------IYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS-- 81 (281)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-- 81 (281)
.+..+..+..+|..++..|+|++|+.+|.+++.+.+... .++.++|.+|..+|++++|+..+++++.+.|..
T Consensus 183 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 262 (406)
T 3sf4_A 183 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD 262 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcC
Confidence 566788899999999999999999999999998866543 499999999999999999999999999998766
Q ss_pred ----hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 82 ----VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEA 157 (281)
Q Consensus 82 ----~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (281)
..++..+|.++...|++++|+..+.+++.+.+..... . .........+......+++.++...+.+
T Consensus 263 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~ 332 (406)
T 3sf4_A 263 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDR---I-------GEGRACWSLGNAYTALGNHDQAMHFAEK 332 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---H-------HHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCc---H-------HHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7899999999999999999999999999997653331 1 1112223334444566778888888888
Q ss_pred HHHHh
Q 023501 158 ALEEK 162 (281)
Q Consensus 158 ~l~~~ 162 (281)
+++..
T Consensus 333 al~~~ 337 (406)
T 3sf4_A 333 HLEIS 337 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88754
No 187
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.28 E-value=5.8e-11 Score=108.82 Aligned_cols=155 Identities=11% Similarity=0.041 Sum_probs=125.8
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc--CHHHHHHH
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDR----------YGAAIDAYTEAITLCPNVPIYWTNRALCHLKRN--DWTKVEAD 70 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~ 70 (281)
.+.++..+|+...+|..+|..+...|+ +++|+.++++++..+|.+..+|+.|+.++..++ +|++|+..
T Consensus 52 ~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~ 131 (567)
T 1dce_A 52 TSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELEL 131 (567)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred HHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHH
Confidence 456677789999999999999999988 999999999999999999999999999999999 78999999
Q ss_pred HHHHHhhcCcchhHHHHHHHHHHHhc-ChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHH-----HHH
Q 023501 71 CRKAIQLDHDSVKGHYLLGQTLLQRN-EYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQES-----SKR 144 (281)
Q Consensus 71 ~~~al~l~p~~~~a~~~la~~~~~~g-~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~ 144 (281)
++++++++|.+..||..++.++..+| .++++++.+.++++.+|.+. ..+...+.+...+..... ...
T Consensus 132 ~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~-------saW~~r~~ll~~l~~~~~~~~~~~~~ 204 (567)
T 1dce_A 132 CARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY-------SSWHYRSCLLPQLHPQPDSGPQGRLP 204 (567)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCH-------HHHHHHHHHHHHHSCCCCSSSCCSSC
T ss_pred HHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCc-------cHHHHHHHHHHhhccccccccccccc
Confidence 99999999999999999999999999 99999999999999988732 223222222211100000 011
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 023501 145 SWELQSLKEACEAALEEKHV 164 (281)
Q Consensus 145 ~~~~~~~~~~~~~~l~~~~~ 164 (281)
.+.++++.+.+.+++..+|.
T Consensus 205 ~~~~~eel~~~~~ai~~~P~ 224 (567)
T 1dce_A 205 ENVLLKELELVQNAFFTDPN 224 (567)
T ss_dssp HHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHhhCCC
Confidence 35677788888888887654
No 188
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.28 E-value=6.1e-12 Score=84.16 Aligned_cols=58 Identities=17% Similarity=0.246 Sum_probs=48.9
Q ss_pred CCCCCcccccCCcccccCc---eecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCccc
Q 023501 202 AEVPDYLCCKITLDIFRDP---VITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPN 260 (281)
Q Consensus 202 ~~~p~~~~c~i~~~~~~~p---v~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n 260 (281)
......+.|+||.+.|.+| ++++|||+||..||.+|+.... .||+||.++...++.+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHD-SCPVCRKSLTGQNTATN 70 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTC-SCTTTCCCCCCSCSCCC
T ss_pred ccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCC-cCcCcCCccCCcccCCC
Confidence 3445678999999999876 3579999999999999998775 59999999998777765
No 189
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.27 E-value=3.4e-11 Score=86.35 Aligned_cols=95 Identities=16% Similarity=0.104 Sum_probs=81.7
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501 2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS 81 (281)
Q Consensus 2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 81 (281)
.++.++...|+.+..+..+|..++..|+|++|+..|.+++..+|.++.++.++|.+|..+|++++|+..++++++++|..
T Consensus 7 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 86 (115)
T 2kat_A 7 RLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSR 86 (115)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 35667777888999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred h--hHHHHHHHHHHHhc
Q 023501 82 V--KGHYLLGQTLLQRN 96 (281)
Q Consensus 82 ~--~a~~~la~~~~~~g 96 (281)
. .+...+...+..++
T Consensus 87 ~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 87 GDQQVVKELQVFLRRLA 103 (115)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhc
Confidence 3 44444444444443
No 190
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.27 E-value=2e-10 Score=86.85 Aligned_cols=109 Identities=14% Similarity=0.181 Sum_probs=88.9
Q ss_pred chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc-------chh-----HHHHHHHHHHHhcChHHHHHHHHHHHhh---
Q 023501 47 VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD-------SVK-----GHYLLGQTLLQRNEYADGIKELEKALNL--- 111 (281)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~-------~~~-----a~~~la~~~~~~g~~~~A~~~~~kal~~--- 111 (281)
.+..+.++|..++++|+|++|+..|++|++++|+ +.. +|.++|.++..+|+|++|+..|.+++++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 3567889999999999999999999999999999 444 9999999999999999999999999999
Q ss_pred ----ccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 023501 112 ----GRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHVLDI 167 (281)
Q Consensus 112 ----~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 167 (281)
+|+. ...+ ++.....+......++++++...++++++..|....
T Consensus 90 ~~e~~pd~-------~~A~-----~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 90 RGELNQDE-------GKLW-----ISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp HCCTTSTH-------HHHH-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred cccCCCch-------HHHH-----HHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 8861 1111 011244455566778899999999999998776444
No 191
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=2.4e-12 Score=84.04 Aligned_cols=53 Identities=19% Similarity=0.313 Sum_probs=46.4
Q ss_pred CCCCCCcccccCCcccccCc-------eecCCCcccccchHHhHhccCCCCCCCCCCCcCC
Q 023501 201 PAEVPDYLCCKITLDIFRDP-------VITPSGVTYERAVILDHLDKVGKFDPITREPLRE 254 (281)
Q Consensus 201 ~~~~p~~~~c~i~~~~~~~p-------v~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~ 254 (281)
....+..+.|+||.+.+.+| ++++|||+||..||..|+.... .||+||.++..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~ 68 (69)
T 2ea6_A 9 GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINH 68 (69)
T ss_dssp CCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCS-SCTTTCCCCCC
T ss_pred ccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCC-CCCCCCCccCc
Confidence 34556788999999999998 8899999999999999998766 59999998864
No 192
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.26 E-value=1.4e-10 Score=97.51 Aligned_cols=142 Identities=15% Similarity=0.136 Sum_probs=114.1
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc--
Q 023501 10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV------PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS-- 81 (281)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-- 81 (281)
.+..+..+..+|..++..|++++|+.+|.+++...+.. +.++.++|.++...|++++|+..+++++.+.+..
T Consensus 179 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (338)
T 3ro2_A 179 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD 258 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc
Confidence 55667889999999999999999999999999886543 3499999999999999999999999999988765
Q ss_pred ----hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 82 ----VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEA 157 (281)
Q Consensus 82 ----~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (281)
..++..+|.++..+|++++|+..+++++.+.+..... ..........+......++..++...+.+
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 259 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR----------IGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc----------HHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 7899999999999999999999999999986542221 11122223334445566777788888887
Q ss_pred HHHH
Q 023501 158 ALEE 161 (281)
Q Consensus 158 ~l~~ 161 (281)
++..
T Consensus 329 a~~~ 332 (338)
T 3ro2_A 329 HLEI 332 (338)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 7764
No 193
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.26 E-value=5.6e-11 Score=84.45 Aligned_cols=90 Identities=10% Similarity=0.057 Sum_probs=83.8
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV 82 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 82 (281)
++.+....|..+..+..+|..++..|+|++|+..|.+++..+|+++.++.++|.++..+|++++|+..++++++++|.++
T Consensus 27 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 106 (118)
T 1elw_A 27 YSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNP 106 (118)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH
Confidence 45566667788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHH
Q 023501 83 KGHYLLGQTL 92 (281)
Q Consensus 83 ~a~~~la~~~ 92 (281)
.++..++.+.
T Consensus 107 ~~~~~l~~~~ 116 (118)
T 1elw_A 107 QLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999988765
No 194
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.25 E-value=9.9e-11 Score=86.12 Aligned_cols=107 Identities=7% Similarity=-0.037 Sum_probs=88.7
Q ss_pred HhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcch
Q 023501 42 TLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYI 121 (281)
Q Consensus 42 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~ 121 (281)
..+|.++..+..+|.+++..|+|++|+..+++++.++|.++.+++.+|.++..+|++++|+..+.+++.++|+...
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~---- 78 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK---- 78 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHH----
Confidence 4567889999999999999999999999999999999999999999999999999999999999999999876221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023501 122 VEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHV 164 (281)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (281)
. ....+......+++.++...+.++++..+.
T Consensus 79 ---~---------~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 79 ---A---------HFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp ---H---------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ---H---------HHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 2 222333344557788888888888887664
No 195
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.25 E-value=1.8e-10 Score=95.21 Aligned_cols=98 Identities=16% Similarity=0.163 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhcCcchhHH
Q 023501 10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLK----RNDWTKVEADCRKAIQLDHDSVKGH 85 (281)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p~~~~a~ 85 (281)
.+..+..+..+|..++..|++++|+.+|.++++ |+++.++.++|.+|.. .+++++|+..++++++++ ++.++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 356788899999999999999999999999988 7788899999999999 999999999999999886 78899
Q ss_pred HHHHHHHHH----hcChHHHHHHHHHHHhh
Q 023501 86 YLLGQTLLQ----RNEYADGIKELEKALNL 111 (281)
Q Consensus 86 ~~la~~~~~----~g~~~~A~~~~~kal~~ 111 (281)
+.+|.++.. .+++++|+..|+++++.
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 107 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDL 107 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHc
Confidence 999999999 99999999999999887
No 196
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.25 E-value=1.4e-10 Score=97.15 Aligned_cols=138 Identities=12% Similarity=0.063 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhh-------cCc
Q 023501 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV------PIYWTNRALCHLKRNDWTKVEADCRKAIQL-------DHD 80 (281)
Q Consensus 14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-------~p~ 80 (281)
+..+..+|..++..++|++|+.+|.+++...+.. ..++.++|.+|..+|+|++|+..+++|+++ .+.
T Consensus 115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 194 (293)
T 3u3w_A 115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF 194 (293)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhH
Confidence 3455568999999999999999999999975442 347999999999999999999999999952 344
Q ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 023501 81 SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSW-ELQSLKEACEAAL 159 (281)
Q Consensus 81 ~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l 159 (281)
...+++.+|.+|..+|++++|+..+++++++.+..... .....+...++.+ ....+ .++++...+.+++
T Consensus 195 ~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~-~~~~~~~~~lg~~---------~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM-ALIGQLYYQRGEC---------LRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC-TTHHHHHHHHHHH---------HHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcH-HHHHHHHHHHHHH---------HHHhCCcHHHHHHHHHHHH
Confidence 56799999999999999999999999999997664332 2233343333333 33344 2467777777777
Q ss_pred HH
Q 023501 160 EE 161 (281)
Q Consensus 160 ~~ 161 (281)
..
T Consensus 265 ~i 266 (293)
T 3u3w_A 265 FF 266 (293)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 197
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.24 E-value=1.7e-11 Score=102.48 Aligned_cols=110 Identities=12% Similarity=0.074 Sum_probs=91.3
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV 82 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 82 (281)
+..++...|..+..+..+|..++..|+|++|+..|++++.++|+++.+++++|.+|..+|++++|+..++++++++|++.
T Consensus 27 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 106 (281)
T 2c2l_A 27 YGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp HHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 45667777888999999999999999999999999999999999999999999999999999999999999999999753
Q ss_pred hHH-------------------------------HHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 83 KGH-------------------------------YLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 83 ~a~-------------------------------~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
..+ ..++.. ..|++++|++.++++++++|+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~~~~al~~~p~ 167 (281)
T 2c2l_A 107 LNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRL--IAAERERELEECQRNHEGHED 167 (281)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHHHHTTTSGGGTTTSC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHhhhccccc
Confidence 211 111111 256777788778777777654
No 198
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.24 E-value=4.2e-10 Score=97.67 Aligned_cols=108 Identities=17% Similarity=0.089 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------CchHHHHHHHHHHHHhcCHHHHHHHHHHHHh-----hc
Q 023501 10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCP------NVPIYWTNRALCHLKRNDWTKVEADCRKAIQ-----LD 78 (281)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-----l~ 78 (281)
.+..+..+..+|..+...|+|++|+.+|.+|+.+.+ ..+.++.++|.+|..+|++++|+..+++|+. .+
T Consensus 178 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~ 257 (378)
T 3q15_A 178 SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP 257 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG
T ss_pred hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC
Confidence 446788999999999999999999999999998743 2357899999999999999999999999999 78
Q ss_pred CcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501 79 HDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP 117 (281)
Q Consensus 79 p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~ 117 (281)
|..+.+++.+|.++..+|++++|+..+++++.+.+..++
T Consensus 258 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 296 (378)
T 3q15_A 258 DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSH 296 (378)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCC
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC
Confidence 888999999999999999999999999999999776444
No 199
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.23 E-value=1e-11 Score=82.57 Aligned_cols=55 Identities=18% Similarity=0.227 Sum_probs=44.9
Q ss_pred CCCCcccccCCccccc--CceecC--CCcccccchHHhHhccCCCCCCCCCCCcCCCCC
Q 023501 203 EVPDYLCCKITLDIFR--DPVITP--SGVTYERAVILDHLDKVGKFDPITREPLRESQL 257 (281)
Q Consensus 203 ~~p~~~~c~i~~~~~~--~pv~~~--~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~ 257 (281)
...+++.||||.+.+. +|++.| |||+||+.||.+++......||.||.++....+
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 3467889999999884 566666 999999999999997655569999999886543
No 200
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.23 E-value=4.4e-10 Score=97.58 Aligned_cols=171 Identities=17% Similarity=0.120 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc-------c
Q 023501 15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCP------NVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD-------S 81 (281)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~-------~ 81 (281)
..+..+|..++..|+|++|+.+|.+|+.+.+ ..+.++.++|.+|..+|+++.|+..+++|+++.+. .
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence 3567889999999999999999999998742 25689999999999999999999999999987543 3
Q ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 82 VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEE 161 (281)
Q Consensus 82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (281)
+.++..+|.++..+|++++|+..|.+++.+.+..++. . ..+......+......++++++...+.+++..
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~---~-------~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~ 251 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQND---R-------FIAISLLNIANSYDRSGDDQMAVEHFQKAAKV 251 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---H-------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCH---H-------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5688999999999999999999999999986543332 0 11222333344455667888888888888873
Q ss_pred hhhhhhhh------hccchhhhhhHHHHHHHHHHHHHHHh
Q 023501 162 KHVLDISR------KEGFLDEASSTHLKQMEALRQVFRKA 195 (281)
Q Consensus 162 ~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~ 195 (281)
........ .-+.+....+++++....+.+.+...
T Consensus 252 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 291 (378)
T 3q15_A 252 SREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHI 291 (378)
T ss_dssp HHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 22111100 01222334455666666666665544
No 201
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.23 E-value=1.8e-10 Score=97.28 Aligned_cols=152 Identities=9% Similarity=-0.073 Sum_probs=118.0
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCchHHHHHHHHHH----HHh---cCHHHHHHHHHH
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKD--RYGAAIDAYTEAITLCPNVPIYWTNRALCH----LKR---NDWTKVEADCRK 73 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~a~~~----~~~---~~~~~A~~~~~~ 73 (281)
.+.++..+|+...+|..+|..+...+ ++++++.++..++..+|.+..+|..|+.++ ..+ +++++++..+++
T Consensus 56 t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~ 135 (306)
T 3dra_A 56 TELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEA 135 (306)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHH
T ss_pred HHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHH
Confidence 45667778899999999999999998 999999999999999999999999999998 667 789999999999
Q ss_pred HHhhcCcchhHHHHHHHHHHHhcChH--HHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 74 AIQLDHDSVKGHYLLGQTLLQRNEYA--DGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSL 151 (281)
Q Consensus 74 al~l~p~~~~a~~~la~~~~~~g~~~--~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 151 (281)
+++.+|.+..+|+.++.++..+|.++ ++++.+.++++.+|.+.. .+...+.+...+. .......+.+.
T Consensus 136 ~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~s-------AW~~R~~ll~~l~---~~~~~~~~~eE 205 (306)
T 3dra_A 136 MLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNS-------AWSHRFFLLFSKK---HLATDNTIDEE 205 (306)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHH-------HHHHHHHHHHSSG---GGCCHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHhcc---ccchhhhHHHH
Confidence 99999999999999999999999988 999999999999776322 2221111111110 00012235667
Q ss_pred HHHHHHHHHHhhh
Q 023501 152 KEACEAALEEKHV 164 (281)
Q Consensus 152 ~~~~~~~l~~~~~ 164 (281)
.+.+.+++..++.
T Consensus 206 l~~~~~aI~~~p~ 218 (306)
T 3dra_A 206 LNYVKDKIVKCPQ 218 (306)
T ss_dssp HHHHHHHHHHCSS
T ss_pred HHHHHHHHHhCCC
Confidence 7777777776553
No 202
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.21 E-value=5.8e-11 Score=99.59 Aligned_cols=102 Identities=15% Similarity=-0.009 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc----
Q 023501 13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITL-------CPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS---- 81 (281)
Q Consensus 13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---- 81 (281)
.+..+..+|..++..|+|++|+.+|.+++.. .+..+.+++++|.+|..+|+|++|+..+++|+++.+..
T Consensus 154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~ 233 (293)
T 3u3w_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH
Confidence 4668999999999999999999999999953 22345799999999999999999999999999988654
Q ss_pred --hhHHHHHHHHHHHhcC-hHHHHHHHHHHHhhccC
Q 023501 82 --VKGHYLLGQTLLQRNE-YADGIKELEKALNLGRG 114 (281)
Q Consensus 82 --~~a~~~la~~~~~~g~-~~~A~~~~~kal~~~p~ 114 (281)
+.+++.+|.++..+|+ +++|+..|++|+.+...
T Consensus 234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~ 269 (293)
T 3u3w_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDI 269 (293)
T ss_dssp THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 7899999999999995 69999999999988644
No 203
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.20 E-value=1e-11 Score=77.27 Aligned_cols=47 Identities=19% Similarity=0.220 Sum_probs=40.6
Q ss_pred CCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCC
Q 023501 205 PDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRES 255 (281)
Q Consensus 205 p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~ 255 (281)
.+.+.|+||.+.+.+|++++|||+||+.||..| ...||+||.++...
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeecC
Confidence 356889999999999999999999999999883 33599999988753
No 204
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.20 E-value=2.2e-10 Score=85.82 Aligned_cols=104 Identities=15% Similarity=0.155 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC-----
Q 023501 11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV------PIYWTNRALCHLKRNDWTKVEADCRKAIQLDH----- 79 (281)
Q Consensus 11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p----- 79 (281)
...+..+..+|..++..|+|++|+.+|.+++...+.. +.++.++|.++...|++++|+..+++++++.+
T Consensus 46 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 125 (164)
T 3ro3_A 46 AAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 125 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccch
Confidence 3445789999999999999999999999999886542 67899999999999999999999999998753
Q ss_pred -cchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 80 -DSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 80 -~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
....++..+|.++..+|++++|+..+.+++++...
T Consensus 126 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 126 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 33678999999999999999999999999988543
No 205
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.20 E-value=1.2e-09 Score=91.49 Aligned_cols=145 Identities=11% Similarity=0.036 Sum_probs=112.7
Q ss_pred chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch------HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc-
Q 023501 9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVP------IYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS- 81 (281)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~- 81 (281)
.++.....+...+..++..|+|++|+..|.+++...+... ..+..+|.++...|++++|+..+++|+++.+..
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 149 (293)
T 2qfc_A 70 SDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI 149 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS
T ss_pred cchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC
Confidence 3456677888999999999999999999999999887643 456778999999999999999999999876543
Q ss_pred -----hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 82 -----VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACE 156 (281)
Q Consensus 82 -----~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (281)
..+++.+|.+|..+|++++|+..|++++.+....+...... +......+......++++++...++
T Consensus 150 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~---------~~~~~nlg~~y~~~~~y~~Al~~~~ 220 (293)
T 2qfc_A 150 DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFD---------VKVRYNHAKALYLDSRYEESLYQVN 220 (293)
T ss_dssp CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH---------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccch---------HHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 56899999999999999999999999996643322210001 0122334444556788888888888
Q ss_pred HHHHHh
Q 023501 157 AALEEK 162 (281)
Q Consensus 157 ~~l~~~ 162 (281)
++++..
T Consensus 221 kal~~~ 226 (293)
T 2qfc_A 221 KAIEIS 226 (293)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888764
No 206
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.20 E-value=2.6e-09 Score=90.84 Aligned_cols=159 Identities=10% Similarity=0.026 Sum_probs=124.8
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc--CHHHHHHH
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDR----------YGAAIDAYTEAITLCPNVPIYWTNRALCHLKRN--DWTKVEAD 70 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~ 70 (281)
.+.++..+|+...+|..++..+...+. +++++.++..++..+|.+..+|..|+.++..++ .+++++..
T Consensus 53 t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~ 132 (331)
T 3dss_A 53 TSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELEL 132 (331)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHH
T ss_pred HHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHH
Confidence 456677789999999999999987766 789999999999999999999999999999999 49999999
Q ss_pred HHHHHhhcCcchhHHHHHHHHHHHhcC-hHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHH-----HHHHHH
Q 023501 71 CRKAIQLDHDSVKGHYLLGQTLLQRNE-YADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWE-----QESSKR 144 (281)
Q Consensus 71 ~~~al~l~p~~~~a~~~la~~~~~~g~-~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~ 144 (281)
+.++++++|.|..+|..++.++..+|. ++++++.+.+++..+|.+.. .+.....+...+.. ......
T Consensus 133 ~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~S-------AW~~R~~ll~~l~~~~~~~~~~~~~ 205 (331)
T 3dss_A 133 CARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS-------SWHYRSCLLPQLHPQPDSGPQGRLP 205 (331)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHH-------HHHHHHHHHHHHSCCC------CCC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHH-------HHHHHHHHHHHhhhccccccccccc
Confidence 999999999999999999999999999 69999999999999887333 22222222111100 000011
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhh
Q 023501 145 SWELQSLKEACEAALEEKHVLDIS 168 (281)
Q Consensus 145 ~~~~~~~~~~~~~~l~~~~~~~~~ 168 (281)
.+.+.+..+.+.+++...|....+
T Consensus 206 ~~~~~eEle~~~~ai~~~P~d~Sa 229 (331)
T 3dss_A 206 ENVLLKELELVQNAFFTDPNDQSA 229 (331)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCCHHH
Confidence 255677788888888877764443
No 207
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.20 E-value=1e-10 Score=98.85 Aligned_cols=105 Identities=14% Similarity=0.116 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc---
Q 023501 11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV------PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS--- 81 (281)
Q Consensus 11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~--- 81 (281)
...+..+..+|..+.. |+|++|+.+|++|+.+.|.. +.++.++|.+|..+|+|++|+..+++++++.|.+
T Consensus 113 ~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 191 (307)
T 2ifu_A 113 DTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENY 191 (307)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh
Confidence 3467889999999999 99999999999999997653 6789999999999999999999999999997754
Q ss_pred ---hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501 82 ---VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP 117 (281)
Q Consensus 82 ---~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~ 117 (281)
..+++.+|.++..+|++++|+..|++++ ++|....
T Consensus 192 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~ 229 (307)
T 2ifu_A 192 PTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG 229 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence 3478889999999999999999999999 9887544
No 208
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.19 E-value=3.6e-10 Score=78.11 Aligned_cols=86 Identities=13% Similarity=0.071 Sum_probs=74.6
Q ss_pred CCCchHHHHHHHHHHHHhcC---HHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcc
Q 023501 44 CPNVPIYWTNRALCHLKRND---WTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGY 120 (281)
Q Consensus 44 ~p~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~ 120 (281)
+|.++.++..+|.+++..++ .++|...+++|++++|+++.+++.+|.+++..|+|++|+..|+++++.+|. .+.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~-- 78 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLD-- 78 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC--
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc--
Confidence 68899999999999976665 799999999999999999999999999999999999999999999999887 443
Q ss_pred hHHHHHHHHHHHH
Q 023501 121 IVEDIWQELARAK 133 (281)
Q Consensus 121 ~~~~~~~~l~~~~ 133 (281)
...+...+.+++
T Consensus 79 -~~~i~~~I~~A~ 90 (93)
T 3bee_A 79 -RVTIIESINKAK 90 (93)
T ss_dssp -HHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHH
Confidence 455555555543
No 209
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.7e-10 Score=85.72 Aligned_cols=92 Identities=14% Similarity=-0.010 Sum_probs=82.3
Q ss_pred hhhhhhchHHH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC
Q 023501 3 LEAGLAGVAKQ---AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDH 79 (281)
Q Consensus 3 l~~~~~~~~~~---a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p 79 (281)
++.++...|+. +..+..+|..++..|+|++|+..|.+++..+|+++.++.++|.++..+|++++|+..++++++++|
T Consensus 51 ~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 51 YTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 34445544554 889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHH
Q 023501 80 DSVKGHYLLGQTLLQ 94 (281)
Q Consensus 80 ~~~~a~~~la~~~~~ 94 (281)
.+..++..++.+...
T Consensus 131 ~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 131 KNKVFQEALRNISGP 145 (148)
T ss_dssp SCHHHHHHHHHHHCS
T ss_pred CcHHHHHHHHHHHhh
Confidence 999999888876543
No 210
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.18 E-value=7e-10 Score=94.34 Aligned_cols=156 Identities=13% Similarity=-0.000 Sum_probs=123.1
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC-HHHHHHHHHHHHhhc
Q 023501 2 VLEAGLAGVAKQAEQLRLDGNYYFSKD--RYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRND-WTKVEADCRKAIQLD 78 (281)
Q Consensus 2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~l~ 78 (281)
+++.++..+|++..+|..++..+...+ .+++++.++.++++.+|.|..+|+.++.+...+|. +++++.++.++|+.+
T Consensus 96 ~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~ 175 (331)
T 3dss_A 96 FLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN 175 (331)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC
Confidence 345566778999999999999999988 49999999999999999999999999999999998 699999999999999
Q ss_pred CcchhHHHHHHHHHHHh--------------cChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHH-H-HHHHH
Q 023501 79 HDSVKGHYLLGQTLLQR--------------NEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLL-W-EQESS 142 (281)
Q Consensus 79 p~~~~a~~~la~~~~~~--------------g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~~ 142 (281)
|.|..||..++.++..+ +.++++++.+.+++.++|++.. .+..+.-+-... . .....
T Consensus 176 p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~S-------aW~Y~r~ll~~~~~~~~~~~ 248 (331)
T 3dss_A 176 FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQS-------AWFYHRWLLGAGSGRCELSV 248 (331)
T ss_dssp SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHH-------HHHHHHHHHHSSSCGGGCCH
T ss_pred CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHhccCccccch
Confidence 99999999999999988 6689999999999999887332 222211111100 0 00012
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 023501 143 KRSWELQSLKEACEAALEEKHV 164 (281)
Q Consensus 143 ~~~~~~~~~~~~~~~~l~~~~~ 164 (281)
.+.+.++++.+.+.++++..|+
T Consensus 249 ~~~~~l~~el~~~~elle~~pd 270 (331)
T 3dss_A 249 EKSTVLQSELESCKELQELEPE 270 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHhhCcc
Confidence 3345666677777777776654
No 211
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.17 E-value=5.8e-10 Score=101.27 Aligned_cols=113 Identities=15% Similarity=0.094 Sum_probs=103.3
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHH-hCCCchHHHHHHHHHHHHhcCHHH
Q 023501 2 VLEAGLAGVAKQAEQLRLDGNYYFS-------KDRYG-------AAIDAYTEAIT-LCPNVPIYWTNRALCHLKRNDWTK 66 (281)
Q Consensus 2 ~l~~~~~~~~~~a~~~~~~g~~~~~-------~~~~~-------~A~~~~~~al~-~~p~~~~~~~~~a~~~~~~~~~~~ 66 (281)
++++++...|..+..|...|..+.. .|+++ +|+..|++|+. ..|++..+|..+|..+...|++++
T Consensus 260 ~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~ 339 (530)
T 2ooe_A 260 AYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEK 339 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHH
Confidence 3556677788889999999999986 79987 99999999997 799999999999999999999999
Q ss_pred HHHHHHHHHhhcCcch-hHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 67 VEADCRKAIQLDHDSV-KGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 67 A~~~~~~al~l~p~~~-~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
|...++++++++|.++ .+|..+|.++...|++++|...|.++++..|.
T Consensus 340 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~ 388 (530)
T 2ooe_A 340 VHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART 388 (530)
T ss_dssp HHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 9999999999999985 69999999999999999999999999998654
No 212
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.16 E-value=1e-09 Score=90.55 Aligned_cols=98 Identities=17% Similarity=0.135 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhcCcch
Q 023501 11 AKQAEQLRLDGNYYFS----KDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLK----RNDWTKVEADCRKAIQLDHDSV 82 (281)
Q Consensus 11 ~~~a~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p~~~ 82 (281)
+..+..+..+|..+.. .+++++|+.+|.++++.+ ++.++.++|.+|.. .+++++|+..++++++++ ++
T Consensus 35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~ 110 (273)
T 1ouv_A 35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YA 110 (273)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH
T ss_pred CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--Cc
Confidence 4567889999999999 999999999999999985 79999999999999 999999999999999985 88
Q ss_pred hHHHHHHHHHHH----hcChHHHHHHHHHHHhhc
Q 023501 83 KGHYLLGQTLLQ----RNEYADGIKELEKALNLG 112 (281)
Q Consensus 83 ~a~~~la~~~~~----~g~~~~A~~~~~kal~~~ 112 (281)
.+++.+|.+|.. .+++++|+.+|+++++..
T Consensus 111 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~ 144 (273)
T 1ouv_A 111 EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN 144 (273)
T ss_dssp HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC
Confidence 999999999999 999999999999999884
No 213
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.16 E-value=4.9e-11 Score=84.04 Aligned_cols=72 Identities=18% Similarity=0.254 Sum_probs=69.0
Q ss_pred hCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 43 LCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 43 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
++|+++.++..+|.++...|++++|+..++++++++|.+..+++.+|.++..+|++++|+..+++++.+.|.
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 368899999999999999999999999999999999999999999999999999999999999999999776
No 214
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.16 E-value=2.5e-11 Score=78.89 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=42.3
Q ss_pred CcccccCCcccccCc-eecCCCcccccchHHhHhccCCCCCCCCCCCcCC
Q 023501 206 DYLCCKITLDIFRDP-VITPSGVTYERAVILDHLDKVGKFDPITREPLRE 254 (281)
Q Consensus 206 ~~~~c~i~~~~~~~p-v~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~ 254 (281)
....|+||.+.+.+| ++++|||+||..||.+|+..+. .||+||.++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~-~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNP-TCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSC-STTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcC-cCcCCChhhHh
Confidence 356799999999997 6799999999999999998776 59999998863
No 215
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.15 E-value=3.4e-10 Score=82.25 Aligned_cols=91 Identities=11% Similarity=0.058 Sum_probs=78.0
Q ss_pred hhhhchHHHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 023501 5 AGLAGVAKQA---EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV---PIYWTNRALCHLKRNDWTKVEADCRKAIQLD 78 (281)
Q Consensus 5 ~~~~~~~~~a---~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~ 78 (281)
.++...|+.. ..+..+|..++..|+|++|+..|.+++...|++ +.++.++|.++..+|++++|+..++++++..
T Consensus 27 ~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 27 SFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3444344444 789999999999999999999999999999999 8899999999999999999999999999999
Q ss_pred CcchhHHHHHHHHHHHh
Q 023501 79 HDSVKGHYLLGQTLLQR 95 (281)
Q Consensus 79 p~~~~a~~~la~~~~~~ 95 (281)
|++..+...+..+....
T Consensus 107 p~~~~~~~a~~~l~~l~ 123 (129)
T 2xev_A 107 PGSDAARVAQERLQSIR 123 (129)
T ss_dssp TTSHHHHHHHHHHHHHC
T ss_pred CCChHHHHHHHHHHHHH
Confidence 99988776665544433
No 216
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.14 E-value=5.1e-10 Score=87.76 Aligned_cols=106 Identities=14% Similarity=0.085 Sum_probs=93.1
Q ss_pred chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CC----CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc-
Q 023501 9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL---CP----NVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD- 80 (281)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~- 80 (281)
..+..+..+..+|..+...|++++|+.+|.+++.. .+ ..+.++.++|.++..+|++++|+..+++++.+.+.
T Consensus 61 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 140 (203)
T 3gw4_A 61 DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA 140 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 56778899999999999999999999999999998 44 23578999999999999999999999999987532
Q ss_pred -----chhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 81 -----SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 81 -----~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
...++..+|.++..+|++++|+..+.+++.+...
T Consensus 141 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 141 DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 2345689999999999999999999999998654
No 217
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.13 E-value=6.8e-10 Score=78.31 Aligned_cols=69 Identities=13% Similarity=0.078 Sum_probs=66.2
Q ss_pred chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501 47 VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGA 115 (281)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~ 115 (281)
++..+.++|.+++..|+|++|+..++++++++|.++.+++.+|.++..+|++++|+..+.+++.++|+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 467899999999999999999999999999999999999999999999999999999999999998875
No 218
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.13 E-value=3.7e-11 Score=74.52 Aligned_cols=47 Identities=19% Similarity=0.242 Sum_probs=41.3
Q ss_pred CcccccCCcccccC----ceecCCCcccccchHHhHhccCCCCCCCCCCCcC
Q 023501 206 DYLCCKITLDIFRD----PVITPSGVTYERAVILDHLDKVGKFDPITREPLR 253 (281)
Q Consensus 206 ~~~~c~i~~~~~~~----pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~ 253 (281)
....|+||.+.+.+ |++++|||.||..||.+|+.... .||+||.+++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGY-RCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTC-CCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCC-cCCCCCCcCC
Confidence 35679999999876 77899999999999999998875 5999998875
No 219
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.13 E-value=3.3e-10 Score=103.79 Aligned_cols=114 Identities=11% Similarity=-0.007 Sum_probs=106.9
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhc
Q 023501 2 VLEAGLAGVAKQAEQLRLDGNYYFSKD--RYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRN-DWTKVEADCRKAIQLD 78 (281)
Q Consensus 2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~ 78 (281)
+++.++..+|+...+|..+|..+.+.+ +|++|+.++.++++.+|.+..+|..|+.+...+| .++++++++.++|+.+
T Consensus 95 ~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~ 174 (567)
T 1dce_A 95 FLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN 174 (567)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC
Confidence 355677788999999999999999999 7799999999999999999999999999999999 9999999999999999
Q ss_pred CcchhHHHHHHHHHHHh--------------cChHHHHHHHHHHHhhccCC
Q 023501 79 HDSVKGHYLLGQTLLQR--------------NEYADGIKELEKALNLGRGA 115 (281)
Q Consensus 79 p~~~~a~~~la~~~~~~--------------g~~~~A~~~~~kal~~~p~~ 115 (281)
|.+..+|+.+|.++..+ +.++++++.+.+++.++|+.
T Consensus 175 p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~ 225 (567)
T 1dce_A 175 FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND 225 (567)
T ss_dssp CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSC
T ss_pred CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCC
Confidence 99999999999999986 66899999999999999884
No 220
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=1.5e-11 Score=80.47 Aligned_cols=54 Identities=22% Similarity=0.256 Sum_probs=46.4
Q ss_pred CCCCCCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCC
Q 023501 201 PAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQ 256 (281)
Q Consensus 201 ~~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~ 256 (281)
.......+.|+||.+.+.+ ++++|||+||..||.+|+.... .||+||.++...+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 9 VKQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHR-NCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCS-SCHHHHHCTTCCC
T ss_pred hhcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcC-cCCCcCCcccCCC
Confidence 3445678899999999999 9999999999999999998655 5999999987543
No 221
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.12 E-value=4.7e-10 Score=93.01 Aligned_cols=106 Identities=10% Similarity=0.013 Sum_probs=72.1
Q ss_pred hchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-c-hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc--Cc-ch
Q 023501 8 AGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN-V-PIYWTNRALCHLKRNDWTKVEADCRKAIQLD--HD-SV 82 (281)
Q Consensus 8 ~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~--p~-~~ 82 (281)
...|... ..+.+|..+++.++|++|+.+|++++...+. . ..+++++|.++..+|++++|+..+++++.-. |. .+
T Consensus 130 ~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~ 208 (282)
T 4f3v_A 130 VAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACAR 208 (282)
T ss_dssp CTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHH
T ss_pred hcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccH
Confidence 3445555 6677777777777777777777766553211 1 3467777777777777777777777776443 44 55
Q ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 83 KGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
.+++.+|.++..+|+.++|...|++++..+|+
T Consensus 209 da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 209 AIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 67777777777777777777777777777665
No 222
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.12 E-value=6.7e-11 Score=77.04 Aligned_cols=53 Identities=21% Similarity=0.196 Sum_probs=44.0
Q ss_pred CCCCCcccccCCccccc---CceecCCCcccccchHHhHhccCCCCCCCCCCCcCCC
Q 023501 202 AEVPDYLCCKITLDIFR---DPVITPSGVTYERAVILDHLDKVGKFDPITREPLRES 255 (281)
Q Consensus 202 ~~~p~~~~c~i~~~~~~---~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~ 255 (281)
........|+||.+.+. .|++++|||.||..||.+|+..+. .||+||.++...
T Consensus 9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 9 TEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNK-KCPICRVDIEAQ 64 (69)
T ss_dssp CSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCS-BCTTTCSBSCSC
T ss_pred CcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCC-CCcCcCccccCc
Confidence 34456778999998885 467899999999999999998877 499999988753
No 223
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.11 E-value=1.7e-11 Score=90.69 Aligned_cols=55 Identities=20% Similarity=0.353 Sum_probs=48.2
Q ss_pred CCcccccCCcccccCc-------eecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCccc
Q 023501 205 PDYLCCKITLDIFRDP-------VITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPN 260 (281)
Q Consensus 205 p~~~~c~i~~~~~~~p-------v~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n 260 (281)
++.+.||||.+.+.+| |+++|||+||+.||.+|+.... .||+|+.++....+.++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHKRYHPI 66 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCS-BCTTTCCBCTTTCEEEC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCC-CCCCCCCcCcccccccc
Confidence 4678999999999999 8999999999999999998776 59999999987665443
No 224
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.11 E-value=7.1e-10 Score=94.81 Aligned_cols=112 Identities=9% Similarity=-0.059 Sum_probs=89.4
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh-c-CHHHHHHHHHHHHhhcC
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKD-RYGAAIDAYTEAITLCPNVPIYWTNRALCHLKR-N-DWTKVEADCRKAIQLDH 79 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~-~-~~~~A~~~~~~al~l~p 79 (281)
.+.++..+|+...+|..+|..+...| .+++++.++.+++..+|.+..+|..|+.++..+ + ++++++..++++++++|
T Consensus 77 t~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dp 156 (349)
T 3q7a_A 77 TEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDP 156 (349)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCT
T ss_pred HHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCC
Confidence 45566667777888888888888777 488888888888888888888888888888777 6 77888888888888888
Q ss_pred cchhHHHHHHHHHHHhcChH--------HHHHHHHHHHhhccC
Q 023501 80 DSVKGHYLLGQTLLQRNEYA--------DGIKELEKALNLGRG 114 (281)
Q Consensus 80 ~~~~a~~~la~~~~~~g~~~--------~A~~~~~kal~~~p~ 114 (281)
.|..+|..++.++..+|.++ ++++.+.++++.+|.
T Consensus 157 kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~ 199 (349)
T 3q7a_A 157 KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR 199 (349)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC
Confidence 88888888888888887777 788888888888765
No 225
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.10 E-value=7.5e-11 Score=73.11 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=41.5
Q ss_pred CCcccccCCcccccC---ceecC-CCcccccchHHhHhccCCCCCCCCCCCcC
Q 023501 205 PDYLCCKITLDIFRD---PVITP-SGVTYERAVILDHLDKVGKFDPITREPLR 253 (281)
Q Consensus 205 p~~~~c~i~~~~~~~---pv~~~-~g~~~~~~~i~~~~~~~~~~cP~~~~~~~ 253 (281)
.+...|+||.+.+.+ +++++ |||.||..||.+|+..+. .||+||.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~-~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHS-TCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCC-SCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCC-cCcCCCCEeE
Confidence 356779999999988 77777 999999999999998766 5999998764
No 226
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.10 E-value=2.9e-10 Score=77.33 Aligned_cols=69 Identities=26% Similarity=0.446 Sum_probs=66.2
Q ss_pred CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 46 NVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 46 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
.++.++.++|.++...|++++|+..++++++++|.++.+++.+|.++...|++++|+..+++++.++|.
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 75 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 467899999999999999999999999999999999999999999999999999999999999999876
No 227
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.10 E-value=2.9e-10 Score=82.25 Aligned_cols=94 Identities=11% Similarity=0.042 Sum_probs=84.0
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc-------hHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV-------PIYWTNRALCHLKRNDWTKVEADCRKAI 75 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al 75 (281)
++.++...|..+..+..+|..++..|+|++|+.+|.+++...|.+ +.++.++|.++..+|++++|+..+++++
T Consensus 27 ~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 106 (131)
T 1elr_A 27 YDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 106 (131)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 455666677788999999999999999999999999999998877 8999999999999999999999999999
Q ss_pred hhcCcchhHHHHHHHHHHHhcC
Q 023501 76 QLDHDSVKGHYLLGQTLLQRNE 97 (281)
Q Consensus 76 ~l~p~~~~a~~~la~~~~~~g~ 97 (281)
++.| ++.....++.+...+++
T Consensus 107 ~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 107 AEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHCC-CHHHHHHHHHHHHHHHH
T ss_pred HhCC-CHHHHHHHHHHHHHHHH
Confidence 9999 68888888888776654
No 228
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.09 E-value=4e-11 Score=82.56 Aligned_cols=50 Identities=20% Similarity=0.339 Sum_probs=43.7
Q ss_pred CCCcccccCCcccccC---ceecCCCcccccchHHhHhccCCCCCCCCCCCcCC
Q 023501 204 VPDYLCCKITLDIFRD---PVITPSGVTYERAVILDHLDKVGKFDPITREPLRE 254 (281)
Q Consensus 204 ~p~~~~c~i~~~~~~~---pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~ 254 (281)
......|+||.+.+.+ +++++|||.||..||..|+..+. .||+||.++..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~-~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSG-TCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTC-BCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCC-cCcCcCccCCC
Confidence 3467789999998887 77899999999999999998776 59999998864
No 229
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=1.1e-10 Score=77.10 Aligned_cols=54 Identities=17% Similarity=0.271 Sum_probs=45.4
Q ss_pred CCCCCCcccccCCcccccCceec---CCCcccccchHHhHhccCCCCCCCCCCCcCCC
Q 023501 201 PAEVPDYLCCKITLDIFRDPVIT---PSGVTYERAVILDHLDKVGKFDPITREPLRES 255 (281)
Q Consensus 201 ~~~~p~~~~c~i~~~~~~~pv~~---~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~ 255 (281)
..+......|+||.+.+.+|+.+ +|||.||..||.+|+.... .||+||.++...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~-~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 9 VKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRK-VCPLCNMPVLQL 65 (74)
T ss_dssp CCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCS-BCTTTCCBCSSC
T ss_pred cccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCC-cCCCcCcccccc
Confidence 34456678899999999987654 9999999999999998776 599999998653
No 230
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.08 E-value=1.2e-09 Score=99.08 Aligned_cols=144 Identities=10% Similarity=0.000 Sum_probs=116.8
Q ss_pred hhhhhhh-chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch-HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC
Q 023501 2 VLEAGLA-GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVP-IYWTNRALCHLKRNDWTKVEADCRKAIQLDH 79 (281)
Q Consensus 2 ~l~~~~~-~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p 79 (281)
+++.++. ..|+.+..+...|..+...|++++|...|++++...|.++ .+|.+++.++...|++++|...+++|++..|
T Consensus 308 ~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~ 387 (530)
T 2ooe_A 308 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR 387 (530)
T ss_dssp HHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 3456665 5788899999999999999999999999999999999986 6999999999999999999999999999999
Q ss_pred cchhHHHHHHHH-HHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 80 DSVKGHYLLGQT-LLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAA 158 (281)
Q Consensus 80 ~~~~a~~~la~~-~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (281)
.....+...|.+ +...|++++|...|+++++..|+.. .++..+.. ...+.++.+.+...++++
T Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~-------~~~~~~~~---------~~~~~g~~~~Ar~~~~~a 451 (530)
T 2ooe_A 388 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP-------EYVLAYID---------YLSHLNEDNNTRVLFERV 451 (530)
T ss_dssp CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCH-------HHHHHHHH---------HHTTTTCHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCH-------HHHHHHHH---------HHHhCCCHhhHHHHHHHH
Confidence 888877766665 3468999999999999999988622 22222222 223346677788888888
Q ss_pred HHH
Q 023501 159 LEE 161 (281)
Q Consensus 159 l~~ 161 (281)
+..
T Consensus 452 l~~ 454 (530)
T 2ooe_A 452 LTS 454 (530)
T ss_dssp HHS
T ss_pred Hhc
Confidence 775
No 231
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.08 E-value=9e-10 Score=92.96 Aligned_cols=113 Identities=10% Similarity=-0.060 Sum_probs=105.0
Q ss_pred hhhhhhchHHHHHHHHHHHHHH----Hhc---CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHH--HHHHHHHH
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYY----FSK---DRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWT--KVEADCRK 73 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~----~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~--~A~~~~~~ 73 (281)
++.++...|+...+|..++..+ ... +++++++.++.++++.+|.+..+|..|+.+...+|.++ +++..+++
T Consensus 92 ~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~ 171 (306)
T 3dra_A 92 CEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDK 171 (306)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHH
Confidence 4556677889999999999999 666 79999999999999999999999999999999999998 99999999
Q ss_pred HHhhcCcchhHHHHHHHHHHHhcC------hHHHHHHHHHHHhhccCC
Q 023501 74 AIQLDHDSVKGHYLLGQTLLQRNE------YADGIKELEKALNLGRGA 115 (281)
Q Consensus 74 al~l~p~~~~a~~~la~~~~~~g~------~~~A~~~~~kal~~~p~~ 115 (281)
+++.+|.|..||..++.++..+|+ ++++++.+.+++.++|.+
T Consensus 172 ~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n 219 (306)
T 3dra_A 172 VIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQN 219 (306)
T ss_dssp HHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999998 999999999999998873
No 232
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.06 E-value=1.1e-10 Score=77.38 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=43.1
Q ss_pred CCcccccCCcccccCc---eecCCCcccccchHHhHhccCCCCCCCCCCCcCC
Q 023501 205 PDYLCCKITLDIFRDP---VITPSGVTYERAVILDHLDKVGKFDPITREPLRE 254 (281)
Q Consensus 205 p~~~~c~i~~~~~~~p---v~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~ 254 (281)
.....|+||.+.+.+| ++++|||.||..||.+|+..+. .||+||.++..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~-~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANR-TCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCS-SCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCC-cCcCcCCcCCC
Confidence 3567899999999887 6799999999999999998776 59999998875
No 233
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.05 E-value=4.8e-09 Score=94.24 Aligned_cols=99 Identities=10% Similarity=-0.050 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----C---CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc-------
Q 023501 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLC-----P---NVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD------- 78 (281)
Q Consensus 14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~------- 78 (281)
+....+.+..+..+|+|++|+..|.+++++. | .-+..+.++|.+|..+|+|++|+..+++++.+-
T Consensus 309 a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~ 388 (490)
T 3n71_A 309 SKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN 388 (490)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC
Confidence 4455566777889999999999999999872 3 346789999999999999999999999999863
Q ss_pred -CcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhc
Q 023501 79 -HDSVKGHYLLGQTLLQRNEYADGIKELEKALNLG 112 (281)
Q Consensus 79 -p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~ 112 (281)
|.-...+.++|.+|..+|++++|+..|++|+++.
T Consensus 389 Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~ 423 (490)
T 3n71_A 389 NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAIL 423 (490)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 4446789999999999999999999999999874
No 234
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.05 E-value=2.2e-09 Score=85.66 Aligned_cols=97 Identities=18% Similarity=0.144 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc----CHHHHHHHHHHHHhhcCcchhHHHH
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRN----DWTKVEADCRKAIQLDHDSVKGHYL 87 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~----~~~~A~~~~~~al~l~p~~~~a~~~ 87 (281)
..+.++..+|..++..+++++|+.+|+++++. .++.+++++|.+|.. + ++++|+.++++|++ +.++.+++.
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~ 90 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIV 90 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHH
Confidence 67889999999999999999999999999875 689999999999988 7 99999999999954 578999999
Q ss_pred HHHHHHH----hcChHHHHHHHHHHHhhcc
Q 023501 88 LGQTLLQ----RNEYADGIKELEKALNLGR 113 (281)
Q Consensus 88 la~~~~~----~g~~~~A~~~~~kal~~~p 113 (281)
+|.+|.. .+++++|+.+|+++.+..+
T Consensus 91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 120 (212)
T 3rjv_A 91 LARVLVNRQAGATDVAHAITLLQDAARDSE 120 (212)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHTSSTT
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHcCC
Confidence 9999998 8899999999999998854
No 235
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.02 E-value=8.3e-11 Score=100.71 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=43.4
Q ss_pred ccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCC
Q 023501 208 LCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQ 256 (281)
Q Consensus 208 ~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~ 256 (281)
..|+||.+.+.+||++||||+||..||..|+......||+||.++....
T Consensus 333 ~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 333 QLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 6899999999999999999999999999999844446999999987543
No 236
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.01 E-value=1.3e-09 Score=90.40 Aligned_cols=137 Identities=9% Similarity=-0.030 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc-c-hhHHHHHHHH
Q 023501 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD-S-VKGHYLLGQT 91 (281)
Q Consensus 14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~-~-~~a~~~la~~ 91 (281)
.+.....+..+...|+|++|...|..++...|++. ..+.+|.++++.++|++|+..++.++...+. . ..+++.+|.+
T Consensus 102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 102 LAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHH
Confidence 45566778999999999999999999999999988 9999999999999999999999988776432 2 4589999999
Q ss_pred HHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023501 92 LLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHV 164 (281)
Q Consensus 92 ~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (281)
+..+|++++|+.+|++++... ..+.. .....+..+....+.++.+++...+++++...|.
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~-~~P~~------------~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSP-AGEAC------------ARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTST-TTTTT------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHCCCHHHHHHHHHHHhcCC-CCccc------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 999999999999999998542 10110 1223445555666778889999999999987654
No 237
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=99.00 E-value=5.3e-09 Score=73.73 Aligned_cols=76 Identities=14% Similarity=0.055 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHH
Q 023501 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLC-------PNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHY 86 (281)
Q Consensus 14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~ 86 (281)
+.....+|..++..|+|..|+..|.+|+... +..+.++.++|.|++++|+++.|+..++++++++|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 5677899999999999999999999999873 346789999999999999999999999999999999999877
Q ss_pred HHH
Q 023501 87 LLG 89 (281)
Q Consensus 87 ~la 89 (281)
+++
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 776
No 238
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.99 E-value=2.5e-10 Score=82.10 Aligned_cols=49 Identities=12% Similarity=0.074 Sum_probs=40.8
Q ss_pred CcccccCCcccccCce------------------ecCCCcccccchHHhHhcc----CCCCCCCCCCCcCC
Q 023501 206 DYLCCKITLDIFRDPV------------------ITPSGVTYERAVILDHLDK----VGKFDPITREPLRE 254 (281)
Q Consensus 206 ~~~~c~i~~~~~~~pv------------------~~~~g~~~~~~~i~~~~~~----~~~~cP~~~~~~~~ 254 (281)
.+..|+||.+.|.+|+ +++|||.||..||..|+.. ....||+||..+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 4568999999998876 7899999999999999953 23369999998864
No 239
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.98 E-value=1.6e-10 Score=76.27 Aligned_cols=43 Identities=19% Similarity=0.113 Sum_probs=39.1
Q ss_pred cccccCCcccccCceecCCCcc-cccchHHhHhccCCCCCCCCCCCcCC
Q 023501 207 YLCCKITLDIFRDPVITPSGVT-YERAVILDHLDKVGKFDPITREPLRE 254 (281)
Q Consensus 207 ~~~c~i~~~~~~~pv~~~~g~~-~~~~~i~~~~~~~~~~cP~~~~~~~~ 254 (281)
.+.|+||.+.+.+||++||||+ ||..|+..| ..||+||.++..
T Consensus 24 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 4679999999999999999999 999999998 359999998874
No 240
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.95 E-value=4.5e-09 Score=72.75 Aligned_cols=64 Identities=11% Similarity=0.212 Sum_probs=61.2
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhcCcchh-HHHHHHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501 52 TNRALCHLKRNDWTKVEADCRKAIQLDHDSVK-GHYLLGQTLLQRNEYADGIKELEKALNLGRGA 115 (281)
Q Consensus 52 ~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~-a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~ 115 (281)
.++|.++...|++++|+..++++++++|.++. +++.+|.++..+|++++|+..|++++.++|+.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 56899999999999999999999999999999 99999999999999999999999999998873
No 241
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.95 E-value=1.8e-08 Score=86.88 Aligned_cols=138 Identities=9% Similarity=-0.032 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc--------
Q 023501 13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV------PIYWTNRALCHLKRNDWTKVEADCRKAIQLD-------- 78 (281)
Q Consensus 13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-------- 78 (281)
.+..+..+|..++..|++++|+..+.+++...|.. ..++.++|.++...|++++|+..+++++.+.
T Consensus 52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~ 131 (373)
T 1hz4_A 52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL 131 (373)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccC
Confidence 44567788888888888888888888888775532 2346778888888888888888888888775
Q ss_pred CcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 79 HDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAA 158 (281)
Q Consensus 79 p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (281)
|....++..+|.++...|++++|...+.+++.+.+...+.. .... ....+......++..++...+.++
T Consensus 132 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~---------~~~la~~~~~~g~~~~A~~~l~~a 200 (373)
T 1hz4_A 132 PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ--QLQC---------LAMLIQCSLARGDLDNARSQLNRL 200 (373)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG--GHHH---------HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH--HHHH---------HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33456777888888888888888888888888876543321 1111 112222334456666666666666
Q ss_pred HHH
Q 023501 159 LEE 161 (281)
Q Consensus 159 l~~ 161 (281)
+..
T Consensus 201 ~~~ 203 (373)
T 1hz4_A 201 ENL 203 (373)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 242
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.95 E-value=1e-08 Score=81.83 Aligned_cols=97 Identities=13% Similarity=0.078 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhcC--cc
Q 023501 12 KQAEQLRLDGNYYFSKD----RYGAAIDAYTEAITLCPNVPIYWTNRALCHLK----RNDWTKVEADCRKAIQLDH--DS 81 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p--~~ 81 (281)
..+.++..+|..+.. + ++++|+.+|.++++ +.++.+++++|.+|.. .+++++|+.++++|++.+| .+
T Consensus 48 g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~ 124 (212)
T 3rjv_A 48 GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAA 124 (212)
T ss_dssp TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHH
T ss_pred CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcch
Confidence 567889999999988 7 99999999999965 5789999999999987 8899999999999999998 56
Q ss_pred hhHHHHHHHHHHH----hcChHHHHHHHHHHHhh
Q 023501 82 VKGHYLLGQTLLQ----RNEYADGIKELEKALNL 111 (281)
Q Consensus 82 ~~a~~~la~~~~~----~g~~~~A~~~~~kal~~ 111 (281)
+.+++.+|.+|.. .+++++|+.+|++++++
T Consensus 125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 9999999999999 88999999999999988
No 243
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.94 E-value=3.1e-09 Score=90.86 Aligned_cols=113 Identities=9% Similarity=-0.061 Sum_probs=105.7
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHH--------HHHHHH
Q 023501 2 VLEAGLAGVAKQAEQLRLDGNYYFSK-D-RYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWT--------KVEADC 71 (281)
Q Consensus 2 ~l~~~~~~~~~~a~~~~~~g~~~~~~-~-~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~--------~A~~~~ 71 (281)
+++.++...|++..+|..++..+... + ++++++.++.++++.+|.+..+|..|+.+...+|.++ +++..+
T Consensus 111 ~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~ 190 (349)
T 3q7a_A 111 LMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWC 190 (349)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHH
Confidence 34566778899999999999999987 7 9999999999999999999999999999999999888 999999
Q ss_pred HHHHhhcCcchhHHHHHHHHHHHhcC-------hHHHHHHHHHHHhhccC
Q 023501 72 RKAIQLDHDSVKGHYLLGQTLLQRNE-------YADGIKELEKALNLGRG 114 (281)
Q Consensus 72 ~~al~l~p~~~~a~~~la~~~~~~g~-------~~~A~~~~~kal~~~p~ 114 (281)
+++++.+|.|..||..++.++..+++ ++++++.+.+++.++|+
T Consensus 191 ~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~ 240 (349)
T 3q7a_A 191 NEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH 240 (349)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999987 79999999999999887
No 244
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.89 E-value=2.9e-10 Score=84.02 Aligned_cols=55 Identities=20% Similarity=0.353 Sum_probs=49.4
Q ss_pred CCcccccCCcccccCc-------eecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCccc
Q 023501 205 PDYLCCKITLDIFRDP-------VITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPN 260 (281)
Q Consensus 205 p~~~~c~i~~~~~~~p-------v~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n 260 (281)
++.+.|+||.+.+.+| ++++|||+||..||.+|+..+. .||+||.++...++.|+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~~~~~~ 131 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHKRYHPI 131 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCS-BCTTTCCBCCGGGEEEE
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCC-CCCCCCCcCChhcceee
Confidence 4678899999999987 8899999999999999998777 59999999998887775
No 245
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.88 E-value=1.4e-08 Score=75.80 Aligned_cols=86 Identities=10% Similarity=0.026 Sum_probs=78.7
Q ss_pred CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc---CHHHHHHHHHHHHhhc-C-cchhHHHHHHHHHHHhcChHHHHH
Q 023501 29 RYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRN---DWTKVEADCRKAIQLD-H-DSVKGHYLLGQTLLQRNEYADGIK 103 (281)
Q Consensus 29 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~l~-p-~~~~a~~~la~~~~~~g~~~~A~~ 103 (281)
....+...|.+.+..++.+..+.+++|.|+.+.+ +.++++..++.+++.+ | .+.+++|.+|..++.+|+|++|..
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3456778888888888999999999999999988 7789999999999999 7 679999999999999999999999
Q ss_pred HHHHHHhhccC
Q 023501 104 ELEKALNLGRG 114 (281)
Q Consensus 104 ~~~kal~~~p~ 114 (281)
++++++++.|+
T Consensus 93 y~~~lL~ieP~ 103 (152)
T 1pc2_A 93 YVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHCTT
T ss_pred HHHHHHhcCCC
Confidence 99999999887
No 246
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.87 E-value=9.3e-08 Score=82.34 Aligned_cols=143 Identities=12% Similarity=-0.031 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch-----HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch---
Q 023501 11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVP-----IYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV--- 82 (281)
Q Consensus 11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~--- 82 (281)
.-.++.+..+|..++..|++++|+..+.+++...|.+. .++.++|.++...|++++|...+++++.+.|...
T Consensus 11 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 90 (373)
T 1hz4_A 11 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH 90 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHH
Confidence 44577888999999999999999999999999887643 3688999999999999999999999999876543
Q ss_pred ---hHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 83 ---KGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKG-YIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAA 158 (281)
Q Consensus 83 ---~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (281)
.++..+|.++...|++++|+..+++++.+.+..+... ......... .+......+++.++...+.++
T Consensus 91 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~---------la~~~~~~g~~~~A~~~~~~a 161 (373)
T 1hz4_A 91 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRI---------RAQLLWAWARLDEAEASARSG 161 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHH---------HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHH---------HHHHHHHhcCHHHHHHHHHHH
Confidence 3478899999999999999999999999875432210 011111111 222233446677777777777
Q ss_pred HHHh
Q 023501 159 LEEK 162 (281)
Q Consensus 159 l~~~ 162 (281)
+...
T Consensus 162 l~~~ 165 (373)
T 1hz4_A 162 IEVL 165 (373)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 7654
No 247
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.87 E-value=2.7e-08 Score=73.82 Aligned_cols=88 Identities=19% Similarity=0.076 Sum_probs=82.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHH-
Q 023501 20 DGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLK----RNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQ- 94 (281)
Q Consensus 20 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~- 94 (281)
+|..+...+.+++|+.+|++|.+. .++.+++++|.+|.. .+++++|+.++++|.+. .++.+++.+|.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G 106 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG 106 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence 888898989999999999999987 789999999999998 88999999999999987 679999999999999
Q ss_pred ---hcChHHHHHHHHHHHhh
Q 023501 95 ---RNEYADGIKELEKALNL 111 (281)
Q Consensus 95 ---~g~~~~A~~~~~kal~~ 111 (281)
.+++++|+.+|+++.+.
T Consensus 107 ~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 107 KGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHHHHHHC
Confidence 89999999999999988
No 248
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.87 E-value=1.2e-08 Score=90.14 Aligned_cols=96 Identities=14% Similarity=0.018 Sum_probs=81.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCC---chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc--------Cc
Q 023501 17 LRLDGNYYFSKDRYGAAIDAYTEAITL-----CPN---VPIYWTNRALCHLKRNDWTKVEADCRKAIQLD--------HD 80 (281)
Q Consensus 17 ~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~--------p~ 80 (281)
....+......|+|++|+..|.+++++ .|+ -+..+.++|.+|..+|+|++|+..+++++.+- |+
T Consensus 301 ~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~ 380 (433)
T 3qww_A 301 VIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLN 380 (433)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHH
T ss_pred HHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 334445555678999999999999986 344 35789999999999999999999999999863 44
Q ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHHhhc
Q 023501 81 SVKGHYLLGQTLLQRNEYADGIKELEKALNLG 112 (281)
Q Consensus 81 ~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~ 112 (281)
-+..++++|.+|..+|++++|+..|++|+++.
T Consensus 381 ~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 381 VASMWLKLGRLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999884
No 249
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=9.6e-10 Score=72.67 Aligned_cols=43 Identities=19% Similarity=0.110 Sum_probs=37.7
Q ss_pred cccccCCcccccCceecCCCcc-cccchHHhHhccCCCCCCCCCCCcCC
Q 023501 207 YLCCKITLDIFRDPVITPSGVT-YERAVILDHLDKVGKFDPITREPLRE 254 (281)
Q Consensus 207 ~~~c~i~~~~~~~pv~~~~g~~-~~~~~i~~~~~~~~~~cP~~~~~~~~ 254 (281)
.+.|+||.+.+.+||++||||+ ||..|+... . .||+||.++..
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~----~-~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----D-KCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC----S-BCTTTCCBCCC
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC----C-CCccCCceecC
Confidence 4569999999999999999999 999999643 3 59999999875
No 250
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.86 E-value=2.9e-08 Score=87.78 Aligned_cols=100 Identities=6% Similarity=-0.048 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CC---chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc------
Q 023501 13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLC-----PN---VPIYWTNRALCHLKRNDWTKVEADCRKAIQLD------ 78 (281)
Q Consensus 13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~------ 78 (281)
.+.........+..+|+|++|+..|.++++.. |+ -...+.++|.+|..+|+|++|+..+++++.+-
T Consensus 286 ~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~ 365 (429)
T 3qwp_A 286 EVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG 365 (429)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC
Confidence 34555566677889999999999999999762 33 35789999999999999999999999999763
Q ss_pred --CcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhc
Q 023501 79 --HDSVKGHYLLGQTLLQRNEYADGIKELEKALNLG 112 (281)
Q Consensus 79 --p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~ 112 (281)
|.-...++++|.+|..+|++++|+..|++|+++-
T Consensus 366 ~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~ 401 (429)
T 3qwp_A 366 SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIM 401 (429)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 3446689999999999999999999999999874
No 251
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.84 E-value=1.8e-08 Score=69.41 Aligned_cols=74 Identities=12% Similarity=0.026 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchh
Q 023501 10 VAKQAEQLRLDGNYYFSKDR---YGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVK 83 (281)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 83 (281)
+|+++..+..+|..++..++ ..+|..++.+|+..+|+++.++..+|..+++.|+|++|+..++++++.+|..+.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 46778999999999987666 799999999999999999999999999999999999999999999999998443
No 252
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.80 E-value=8.3e-10 Score=76.41 Aligned_cols=65 Identities=14% Similarity=0.187 Sum_probs=47.0
Q ss_pred CcccccCCcccccCceec---CCCcccccchHHhHhcc----C---CCCCCC--CCCC--cCCCCCcccHHHHHHHHHHH
Q 023501 206 DYLCCKITLDIFRDPVIT---PSGVTYERAVILDHLDK----V---GKFDPI--TREP--LRESQLVPNLAIKEAVRAYM 271 (281)
Q Consensus 206 ~~~~c~i~~~~~~~pv~~---~~g~~~~~~~i~~~~~~----~---~~~cP~--~~~~--~~~~~~~~n~~l~~~i~~~~ 271 (281)
..+.|+||.+.+.+|+++ +|||+||+.||.++|.. + ...||. |+.. ++... +.+....+.++.|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~-i~~ll~~~~~~ky~ 82 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENE-IECMVAAEIMQRYK 82 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHH-HHHHSCHHHHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHH-HHHHCCHHHHHHHH
Confidence 467899999999999864 79999999999999864 1 225999 9988 66432 22332344555554
No 253
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=2.1e-09 Score=72.15 Aligned_cols=49 Identities=10% Similarity=0.118 Sum_probs=40.3
Q ss_pred CcccccCCcccccC--------------cee-cCCCcccccchHHhHhccCCCCCCCCCCCcCCC
Q 023501 206 DYLCCKITLDIFRD--------------PVI-TPSGVTYERAVILDHLDKVGKFDPITREPLRES 255 (281)
Q Consensus 206 ~~~~c~i~~~~~~~--------------pv~-~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~ 255 (281)
.+-.|+||.+.|.+ +++ ++|||.|++.||.+|+..+. +||+||.++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN-RCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCC-BCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCC-CCCCcCCCcchh
Confidence 35569999999877 444 45999999999999999776 599999987643
No 254
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.77 E-value=3.7e-08 Score=88.45 Aligned_cols=104 Identities=9% Similarity=-0.079 Sum_probs=91.1
Q ss_pred chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc--
Q 023501 9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL--------CPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD-- 78 (281)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-- 78 (281)
..|..+..+.++|..|..+|+|++|+.+|.+++++ .|+-+..+.|+|.+|..+|+|++|+..+++|+++-
T Consensus 346 ~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~ 425 (490)
T 3n71_A 346 TNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLV 425 (490)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999977 23456789999999999999999999999999863
Q ss_pred ---Ccc---hhHHHHHHHHHHHhcChHHHHHHHHHHHhhc
Q 023501 79 ---HDS---VKGHYLLGQTLLQRNEYADGIKELEKALNLG 112 (281)
Q Consensus 79 ---p~~---~~a~~~la~~~~~~g~~~~A~~~~~kal~~~ 112 (281)
|++ .+....++.++..++.+++|...|.++.+-.
T Consensus 426 ~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 426 THGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554 5566789999999999999999999987653
No 255
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.73 E-value=3.9e-09 Score=67.32 Aligned_cols=47 Identities=15% Similarity=0.125 Sum_probs=41.8
Q ss_pred CcccccCCcccccCceec--CCCcc-cccchHHhHhccCCCCCCCCCCCcC
Q 023501 206 DYLCCKITLDIFRDPVIT--PSGVT-YERAVILDHLDKVGKFDPITREPLR 253 (281)
Q Consensus 206 ~~~~c~i~~~~~~~pv~~--~~g~~-~~~~~i~~~~~~~~~~cP~~~~~~~ 253 (281)
++..|+||.+-..++|++ ||||. +|..|+..|+..+. .||+||.++.
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~-~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNK-PCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTC-CCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCC-cCCCcCcchh
Confidence 456799999999999987 99999 89999999998666 5999999886
No 256
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.72 E-value=1.5e-07 Score=77.59 Aligned_cols=107 Identities=16% Similarity=0.095 Sum_probs=92.9
Q ss_pred chHHHHHHHHHHHHHHHh-----cCCH------HHHHHHHHHHHHhCCC--chHHHHHHHHHHHHh-----cCHHHHHHH
Q 023501 9 GVAKQAEQLRLDGNYYFS-----KDRY------GAAIDAYTEAITLCPN--VPIYWTNRALCHLKR-----NDWTKVEAD 70 (281)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~-----~~~~------~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~-----~~~~~A~~~ 70 (281)
..++.++.++..|..... .+++ ..|...+++|++++|+ +..+|..+|..|.+. |+.++|...
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 356677777777766633 2443 6899999999999999 788999999999995 999999999
Q ss_pred HHHHHhhcCcc-hhHHHHHHHHHHH-hcChHHHHHHHHHHHhhccCC
Q 023501 71 CRKAIQLDHDS-VKGHYLLGQTLLQ-RNEYADGIKELEKALNLGRGA 115 (281)
Q Consensus 71 ~~~al~l~p~~-~~a~~~la~~~~~-~g~~~~A~~~~~kal~~~p~~ 115 (281)
+++|++++|+. +..++.+|..+.. .|++++|...+++++...|..
T Consensus 227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 99999999975 9999999999988 499999999999999998874
No 257
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.70 E-value=5.1e-09 Score=66.53 Aligned_cols=48 Identities=15% Similarity=0.004 Sum_probs=41.7
Q ss_pred CcccccCCcccccCceec--CCCcc-cccchHHhHhccCCCCCCCCCCCcCC
Q 023501 206 DYLCCKITLDIFRDPVIT--PSGVT-YERAVILDHLDKVGKFDPITREPLRE 254 (281)
Q Consensus 206 ~~~~c~i~~~~~~~pv~~--~~g~~-~~~~~i~~~~~~~~~~cP~~~~~~~~ 254 (281)
....|+||.+-..+++++ ||||. ||..|+..++..+. .||+||+++..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~-~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGA-SCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTC-BCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCC-cCCCcCchhhc
Confidence 345799999999999987 99998 99999999987665 59999998863
No 258
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.69 E-value=1e-07 Score=81.50 Aligned_cols=112 Identities=14% Similarity=0.111 Sum_probs=91.6
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHhcCCH-------HHHHH-HHH--HHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHH
Q 023501 2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRY-------GAAID-AYT--EAITLCPNVPIYWTNRALCHLKRNDWTKVEADC 71 (281)
Q Consensus 2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~-------~~A~~-~~~--~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~ 71 (281)
++++++..+|+.+.++..++..+.....+ ..++. .+. .++..+|.++.+|..+|..+...|++++|+..+
T Consensus 221 l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l 300 (372)
T 3ly7_A 221 LLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAI 300 (372)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 67889999999999998888877532111 11111 121 234667999999999999999999999999999
Q ss_pred HHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 72 RKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 72 ~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
++|+.++|. ..+|..+|.++...|++++|++.|.+|+.++|.
T Consensus 301 ~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 301 NTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp HHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred HHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 999999975 678899999999999999999999999999887
No 259
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.68 E-value=6.8e-08 Score=72.11 Aligned_cols=82 Identities=10% Similarity=-0.040 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhC-C-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhH
Q 023501 10 VAKQAEQLRLDGNYYFSKD---RYGAAIDAYTEAITLC-P-NVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKG 84 (281)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a 84 (281)
++...+..++.|..+.+.+ ++++++..++..++.+ | .+..+++++|..|+++|+|++|.++++++++++|+|..+
T Consensus 28 ~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 28 GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 3456789999999999988 7789999999999998 7 568999999999999999999999999999999999988
Q ss_pred HHHHHHH
Q 023501 85 HYLLGQT 91 (281)
Q Consensus 85 ~~~la~~ 91 (281)
...+-.+
T Consensus 108 ~~Lk~~i 114 (152)
T 1pc2_A 108 KELERLI 114 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7655443
No 260
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.68 E-value=6.6e-07 Score=75.09 Aligned_cols=132 Identities=10% Similarity=-0.046 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc----chhHHHH
Q 023501 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCP--NVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD----SVKGHYL 87 (281)
Q Consensus 14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~----~~~a~~~ 87 (281)
...+..+|.++...|++++|+..+.+++..+| ++..++..++.+++++|+.+.|.+.+++..+.+|+ +-.....
T Consensus 100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~ 179 (310)
T 3mv2_B 100 PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILN 179 (310)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHH
Confidence 44556899999999999999999999999987 88999999999999999999999999999999993 2334455
Q ss_pred HHHH--HHHhc--ChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023501 88 LGQT--LLQRN--EYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEK 162 (281)
Q Consensus 88 la~~--~~~~g--~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (281)
++.+ .+..| ++.+|...|+++....|+ .......+. ...+.+++.++...++.+++..
T Consensus 180 Laea~v~l~~g~~~~q~A~~~f~El~~~~p~-------~~~~~lLln----------~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 180 LAESYIKFATNKETATSNFYYYEELSQTFPT-------WKTQLGLLN----------LHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS-------HHHHHHHHH----------HHHHHTCHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhCCC-------cccHHHHHH----------HHHHcCCHHHHHHHHHHHHHhc
Confidence 5444 66667 999999999998776543 101111111 3556677788888777665543
No 261
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.67 E-value=7.3e-09 Score=88.20 Aligned_cols=44 Identities=20% Similarity=0.230 Sum_probs=39.8
Q ss_pred CcccccCCcccccCceecCCCcc-cccchHHhHhccCCCCCCCCCCCcCC
Q 023501 206 DYLCCKITLDIFRDPVITPSGVT-YERAVILDHLDKVGKFDPITREPLRE 254 (281)
Q Consensus 206 ~~~~c~i~~~~~~~pv~~~~g~~-~~~~~i~~~~~~~~~~cP~~~~~~~~ 254 (281)
..+.|+||.+.+.+||++||||+ ||+.|+..| . .||+||.++..
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~-~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----R-KCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----S-BCTTTCCBCCE
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----C-cCCCCCCCccC
Confidence 35789999999999999999999 999999988 3 59999999874
No 262
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.66 E-value=6.9e-09 Score=69.07 Aligned_cols=43 Identities=14% Similarity=0.204 Sum_probs=38.5
Q ss_pred cccccCCcccccCceecCCCcc-cccchHHhHhccCCCCCCCCCCCcCC
Q 023501 207 YLCCKITLDIFRDPVITPSGVT-YERAVILDHLDKVGKFDPITREPLRE 254 (281)
Q Consensus 207 ~~~c~i~~~~~~~pv~~~~g~~-~~~~~i~~~~~~~~~~cP~~~~~~~~ 254 (281)
...|+||.+.+.+||++||||. ||..|+..+. .||+||.++..
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCE
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhC
Confidence 4569999999999999999999 9999999874 59999999874
No 263
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.63 E-value=1.7e-08 Score=70.91 Aligned_cols=46 Identities=13% Similarity=0.095 Sum_probs=39.3
Q ss_pred cccccCCcccccCc------------------eecCCCcccccchHHhHhccCCCCCCCCCCCcC
Q 023501 207 YLCCKITLDIFRDP------------------VITPSGVTYERAVILDHLDKVGKFDPITREPLR 253 (281)
Q Consensus 207 ~~~c~i~~~~~~~p------------------v~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~ 253 (281)
+-.|+||.+.|.+| ++++|||.|+..||..|+..+. +||+||.++.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~-~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCS-BCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCC-cCcCCCCcce
Confidence 45699999998876 3489999999999999998766 5999999865
No 264
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.62 E-value=7.4e-07 Score=79.91 Aligned_cols=97 Identities=16% Similarity=0.103 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhcCcch
Q 023501 11 AKQAEQLRLDGNYYFS----KDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLK----RNDWTKVEADCRKAIQLDHDSV 82 (281)
Q Consensus 11 ~~~a~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p~~~ 82 (281)
...+..+..+|..++. .+++++|+.+|+++++. +++.+++.+|.+|.. .+++++|+..++++++. .++
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~ 111 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLP 111 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCH
Confidence 3467889999999998 89999999999999886 678999999999999 89999999999999876 478
Q ss_pred hHHHHHHHHHHH----hcChHHHHHHHHHHHhh
Q 023501 83 KGHYLLGQTLLQ----RNEYADGIKELEKALNL 111 (281)
Q Consensus 83 ~a~~~la~~~~~----~g~~~~A~~~~~kal~~ 111 (281)
.+++.+|.+|.. .+++++|+.+|+++.+.
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 144 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ 144 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 999999999998 88999999999999876
No 265
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=5.3e-08 Score=62.74 Aligned_cols=45 Identities=16% Similarity=0.118 Sum_probs=39.2
Q ss_pred CCcccccCCcccccCceecCCCcc-cccchHHhHhccCCCCCCCCCCCcCC
Q 023501 205 PDYLCCKITLDIFRDPVITPSGVT-YERAVILDHLDKVGKFDPITREPLRE 254 (281)
Q Consensus 205 p~~~~c~i~~~~~~~pv~~~~g~~-~~~~~i~~~~~~~~~~cP~~~~~~~~ 254 (281)
.+...|+||.+...+||++||||. ||..|+... . .||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~-~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYF----Q-QCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHC----S-SCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcC----C-CCCCCCcchhc
Confidence 356789999999999999999999 999999842 3 59999999874
No 266
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.61 E-value=2.4e-07 Score=82.54 Aligned_cols=95 Identities=11% Similarity=-0.053 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh----cCHHHHHHHHHHHHhhcCcchhHHH
Q 023501 14 AEQLRLDGNYYFSKD---RYGAAIDAYTEAITLCPNVPIYWTNRALCHLKR----NDWTKVEADCRKAIQLDHDSVKGHY 86 (281)
Q Consensus 14 a~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~al~l~p~~~~a~~ 86 (281)
+..+..+|..+...| ++++|+.+|.++++..|.++..++++|.+|... +++++|+..++++. |.++.+++
T Consensus 176 ~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~ 252 (452)
T 3e4b_A 176 DICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWV 252 (452)
T ss_dssp TTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHH
T ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHH
Confidence 337788888888888 888999999999998888888888888888766 68889999988887 88888888
Q ss_pred HHHHH-H--HHhcChHHHHHHHHHHHhh
Q 023501 87 LLGQT-L--LQRNEYADGIKELEKALNL 111 (281)
Q Consensus 87 ~la~~-~--~~~g~~~~A~~~~~kal~~ 111 (281)
.+|.+ + ...+++++|+.+|+++.+.
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~ 280 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAA 280 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHC
Confidence 88888 4 4678888888888888866
No 267
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.59 E-value=3.6e-07 Score=64.13 Aligned_cols=68 Identities=15% Similarity=0.067 Sum_probs=61.8
Q ss_pred chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc-------CcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 47 VPIYWTNRALCHLKRNDWTKVEADCRKAIQLD-------HDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-------p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
++.-++.+|..++..|+|..|+.++++|++.. +.....+..+|.++..+|+++.|+..+++++++.|+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 45667889999999999999999999999874 356789999999999999999999999999999887
No 268
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.59 E-value=6.1e-07 Score=80.47 Aligned_cols=95 Identities=18% Similarity=0.137 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc---CHHHHHHHHHHHHhhcCcchhH
Q 023501 13 QAEQLRLDGNYYFSK-----DRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRN---DWTKVEADCRKAIQLDHDSVKG 84 (281)
Q Consensus 13 ~a~~~~~~g~~~~~~-----~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~l~p~~~~a 84 (281)
.+..+..+|..+... +++++|+.+|.++++. .++.+++++|.+|...| ++++|+..+++|++. .++.+
T Consensus 290 ~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a 365 (490)
T 2xm6_A 290 NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAA 365 (490)
T ss_dssp CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHH
Confidence 455666666666665 6666666666666654 34556666666666544 566666666666665 45666
Q ss_pred HHHHHHHHHH----hcChHHHHHHHHHHHhh
Q 023501 85 HYLLGQTLLQ----RNEYADGIKELEKALNL 111 (281)
Q Consensus 85 ~~~la~~~~~----~g~~~~A~~~~~kal~~ 111 (281)
++.+|.+|.. .+++++|+.+|+++.+.
T Consensus 366 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 366 QFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence 6666666666 56666666666666655
No 269
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.56 E-value=1.5e-06 Score=74.44 Aligned_cols=135 Identities=8% Similarity=0.008 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCH-------HHHHHH-HH--HHHhhcC
Q 023501 13 QAEQLRLDGNYYFSKDR---YGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDW-------TKVEAD-CR--KAIQLDH 79 (281)
Q Consensus 13 ~a~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~-------~~A~~~-~~--~al~l~p 79 (281)
.|-.++.+|..++..++ +.+|+.+|++|++++|+.+.+|..++.||.....+ ..++.. +. .++.++|
T Consensus 195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~ 274 (372)
T 3ly7_A 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELN 274 (372)
T ss_dssp GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCC
Confidence 35566778888887654 47899999999999999999999999999643221 111111 11 2346779
Q ss_pred cchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 80 DSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAAL 159 (281)
Q Consensus 80 ~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 159 (281)
..+.++..+|.++...|++++|+..+++++.++|+ . ... ...+....-.|+..++...+.+++
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s--~------~a~---------~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS--W------LNY---------VLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC--H------HHH---------HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC--H------HHH---------HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999653 1 111 222233344577888888888888
Q ss_pred HHhhh
Q 023501 160 EEKHV 164 (281)
Q Consensus 160 ~~~~~ 164 (281)
..+|.
T Consensus 338 rL~P~ 342 (372)
T 3ly7_A 338 NLRPG 342 (372)
T ss_dssp HHSCS
T ss_pred hcCCC
Confidence 87664
No 270
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.52 E-value=1.8e-06 Score=84.92 Aligned_cols=92 Identities=12% Similarity=0.128 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc-----------
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD----------- 80 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~----------- 80 (281)
+...+|..+|..+...|++++|+..|.+| +++..|...|.++.++|+|++|++++..|.+.+++
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaY 1177 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFAL 1177 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHH
Confidence 45778889999999999999999999775 77888888999999999999999998887765532
Q ss_pred ----------------chhHHHHHHHHHHHhcChHHHHHHHHHH
Q 023501 81 ----------------SVKGHYLLGQTLLQRNEYADGIKELEKA 108 (281)
Q Consensus 81 ----------------~~~a~~~la~~~~~~g~~~~A~~~~~ka 108 (281)
+...++.+|..+...|+|++|...|.++
T Consensus 1178 AKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A 1178 AKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred HhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 2234455566666666666665555554
No 271
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.49 E-value=5e-07 Score=80.42 Aligned_cols=94 Identities=15% Similarity=0.123 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHhCCCchHHHHHHHHH-H--HHhcCHHHHHHHHHHHHhhcCcch
Q 023501 10 VAKQAEQLRLDGNYYFSK----DRYGAAIDAYTEAITLCPNVPIYWTNRALC-H--LKRNDWTKVEADCRKAIQLDHDSV 82 (281)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~~a~~-~--~~~~~~~~A~~~~~~al~l~p~~~ 82 (281)
.+..+..+..+|..+... +++++|+.+|.++. |+++.+++++|.+ + ...+++++|+.+++++++.+ ++
T Consensus 209 g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~ 283 (452)
T 3e4b_A 209 GTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--QP 283 (452)
T ss_dssp TCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--CH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--CH
Confidence 333444445555555443 46666666666655 5566666666665 2 34556666666666655433 55
Q ss_pred hHHHHHHHHHHHhc-----ChHHHHHHHHHHH
Q 023501 83 KGHYLLGQTLLQRN-----EYADGIKELEKAL 109 (281)
Q Consensus 83 ~a~~~la~~~~~~g-----~~~~A~~~~~kal 109 (281)
.+++.+|.+|. .| ++++|+.+|+++.
T Consensus 284 ~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 284 RAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 56666666555 44 5666666665555
No 272
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.48 E-value=2.4e-06 Score=74.80 Aligned_cols=141 Identities=14% Similarity=0.090 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC-----
Q 023501 11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV------PIYWTNRALCHLKRNDWTKVEADCRKAIQLDH----- 79 (281)
Q Consensus 11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p----- 79 (281)
.....++..+|..|+..|+|++|+.+|.+++...+.. ..++.+++.++...|+++.|+..+++++...+
T Consensus 52 ~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 131 (434)
T 4b4t_Q 52 NEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRV 131 (434)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCC
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcc
Confidence 3455678999999999999999999999998876543 24667788888889999999999999988653
Q ss_pred -cchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 80 -DSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAA 158 (281)
Q Consensus 80 -~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (281)
.....+..+|.++...|+|++|+..+.+++.......+.. ....+ ....++.....+++..+...+.++
T Consensus 132 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~-~~~~~---------~~~~~~~~~~~~~~~~A~~~~~~a 201 (434)
T 4b4t_Q 132 FLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP-SLVDV---------HLLESKVYHKLRNLAKSKASLTAA 201 (434)
T ss_dssp SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST-HHHHH---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch-hHHHH---------HHHHHHHHHHhCcHHHHHHHHHHH
Confidence 3467899999999999999999999999998765543331 12122 222233333445566666666665
Q ss_pred HHH
Q 023501 159 LEE 161 (281)
Q Consensus 159 l~~ 161 (281)
+..
T Consensus 202 l~~ 204 (434)
T 4b4t_Q 202 RTA 204 (434)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 273
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.44 E-value=3.1e-06 Score=74.05 Aligned_cols=104 Identities=13% Similarity=0.024 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhh------cCcc
Q 023501 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCP------NVPIYWTNRALCHLKRNDWTKVEADCRKAIQL------DHDS 81 (281)
Q Consensus 14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l------~p~~ 81 (281)
+.+...+|..+...|+++.|+.+|.+++...+ ..+.++.++|.+|...|+|++|+..+.+++.. .+..
T Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~ 174 (434)
T 4b4t_Q 95 KVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSL 174 (434)
T ss_dssp HHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhH
Confidence 34566778888889999999999999987633 34789999999999999999999999999876 3455
Q ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501 82 VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP 117 (281)
Q Consensus 82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~ 117 (281)
..++..+|.++..+|++++|...+.+++.+.+....
T Consensus 175 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 210 (434)
T 4b4t_Q 175 VDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYC 210 (434)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCC
Confidence 789999999999999999999999999998765443
No 274
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.43 E-value=1.8e-06 Score=63.85 Aligned_cols=78 Identities=22% Similarity=0.184 Sum_probs=70.8
Q ss_pred CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHH----hcChHHHHH
Q 023501 28 DRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQ----RNEYADGIK 103 (281)
Q Consensus 28 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~----~g~~~~A~~ 103 (281)
+++++|+.+|.++.+.....+. +|.+|...+.+++|+.++++|.+. .++.+++.+|.+|.. .+++++|+.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 5789999999999998754444 999999999999999999999988 689999999999999 899999999
Q ss_pred HHHHHHhh
Q 023501 104 ELEKALNL 111 (281)
Q Consensus 104 ~~~kal~~ 111 (281)
+|+++.+.
T Consensus 83 ~~~~Aa~~ 90 (138)
T 1klx_A 83 YYSKACGL 90 (138)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHcC
Confidence 99999887
No 275
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.38 E-value=3.1e-07 Score=80.60 Aligned_cols=79 Identities=14% Similarity=0.125 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHH
Q 023501 15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQ 94 (281)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~ 94 (281)
..+...|+.++..|+|++|+.+|+++ ..|..+|.|+.++|+|++|++.+++| .++++|...+.++..
T Consensus 123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~ 189 (449)
T 1b89_A 123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVD 189 (449)
T ss_dssp --------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHH
Confidence 48889999999999999999999976 46888999999999999999999998 367777777777777
Q ss_pred hcChHHHHHHHH
Q 023501 95 RNEYADGIKELE 106 (281)
Q Consensus 95 ~g~~~~A~~~~~ 106 (281)
.|+|+.|..+..
T Consensus 190 ~~ef~lA~~~~l 201 (449)
T 1b89_A 190 GKEFRLAQMCGL 201 (449)
T ss_dssp TTCHHHHHHTTT
T ss_pred cCcHHHHHHHHH
Confidence 777777755544
No 276
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.38 E-value=4.1e-08 Score=70.01 Aligned_cols=46 Identities=15% Similarity=0.106 Sum_probs=0.0
Q ss_pred ccccCCcccccCc-----------------ee-cCCCcccccchHHhHhccCCCCCCCCCCCcCC
Q 023501 208 LCCKITLDIFRDP-----------------VI-TPSGVTYERAVILDHLDKVGKFDPITREPLRE 254 (281)
Q Consensus 208 ~~c~i~~~~~~~p-----------------v~-~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~ 254 (281)
-.|+||.+.|.+| |+ ++|||.|+..||.+|+..+. +||+||.++..
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~-~CP~Cr~~~~~ 112 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPLDNREWEF 112 (117)
T ss_dssp -----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCC-cCCCCCCeeee
Confidence 4699999988774 32 58999999999999998866 59999998653
No 277
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.38 E-value=2.3e-06 Score=71.78 Aligned_cols=97 Identities=10% Similarity=-0.021 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHhcCHHHHHHHHHHHHhh----------c
Q 023501 13 QAEQLRLDGNYYFSKD--RYGAAIDAYTEAITLCPN--VPIYWTNRALCHLKRNDWTKVEADCRKAIQL----------D 78 (281)
Q Consensus 13 ~a~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l----------~ 78 (281)
........|.+.+..| ++++|...|+++.+..|+ .+..+.+ ++.++|+|++|...++.++++ +
T Consensus 175 ~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~ 251 (310)
T 3mv2_B 175 EMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAV 251 (310)
T ss_dssp HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCC
Confidence 3344444565566666 999999999999888887 3445555 899999999999999988887 5
Q ss_pred CcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 79 HDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 79 p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
|+++.++.++..+...+|+ +|..++.++.+..|+
T Consensus 252 p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 252 LYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp SSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 8899999999999999998 899999999999887
No 278
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=5.5e-07 Score=59.76 Aligned_cols=50 Identities=14% Similarity=0.149 Sum_probs=41.3
Q ss_pred CcccccCCcccc--cCceecCCC-----cccccchHHhHhccCC-CCCCCCCCCcCCC
Q 023501 206 DYLCCKITLDIF--RDPVITPSG-----VTYERAVILDHLDKVG-KFDPITREPLRES 255 (281)
Q Consensus 206 ~~~~c~i~~~~~--~~pv~~~~g-----~~~~~~~i~~~~~~~~-~~cP~~~~~~~~~ 255 (281)
..-.|.||.+-+ .+|+++||+ |.|-..||.+|+..+. ..||+|+.++...
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 456799999766 468999996 9999999999998654 3699999998754
No 279
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.29 E-value=1.4e-05 Score=65.81 Aligned_cols=139 Identities=10% Similarity=-0.070 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHHh------cCCHHHHHHH-----HHHH-HHhCCCchHHHHHHHHHHHH---h--c------CHHHH
Q 023501 11 AKQAEQLRLDGNYYFS------KDRYGAAIDA-----YTEA-ITLCPNVPIYWTNRALCHLK---R--N------DWTKV 67 (281)
Q Consensus 11 ~~~a~~~~~~g~~~~~------~~~~~~A~~~-----~~~a-l~~~p~~~~~~~~~a~~~~~---~--~------~~~~A 67 (281)
+..|..++.+|..|-. ...|.+++.. +..+ -..+|+++..++..|..+.. . | ....|
T Consensus 103 ~~RA~~Ly~ra~~y~~raL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A 182 (301)
T 3u64_A 103 YSRARKLYLRGARYALSSLETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAA 182 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHH
Confidence 4456666666555522 2344434332 2222 34467788888888877644 2 2 26889
Q ss_pred HHHHHHHHhhcCc--chhHHHHHHHHHHHh-----cChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHH
Q 023501 68 EADCRKAIQLDHD--SVKGHYLLGQTLLQR-----NEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQE 140 (281)
Q Consensus 68 ~~~~~~al~l~p~--~~~a~~~la~~~~~~-----g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~ 140 (281)
...+++|+++||+ +..+|..+|..|... |+.++|..+|+++++++|+.... .....+.
T Consensus 183 ~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id---------------~~v~YA~ 247 (301)
T 3u64_A 183 VMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPD---------------HHITYAD 247 (301)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSH---------------HHHHHHH
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCch---------------HHHHHHH
Confidence 9999999999999 677999999999995 99999999999999998863221 2222233
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHhhh
Q 023501 141 SSKR-SWELQSLKEACEAALEEKHV 164 (281)
Q Consensus 141 ~~~~-~~~~~~~~~~~~~~l~~~~~ 164 (281)
...+ .++...+...+++++...+.
T Consensus 248 ~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 248 ALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 3323 35667778888898886554
No 280
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.29 E-value=6.8e-06 Score=59.09 Aligned_cols=90 Identities=9% Similarity=-0.010 Sum_probs=77.7
Q ss_pred hcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHH---HHHHHHHHHhhc-C-cchhHHHHHHHHHHHhcChHH
Q 023501 26 SKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTK---VEADCRKAIQLD-H-DSVKGHYLLGQTLLQRNEYAD 100 (281)
Q Consensus 26 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~---A~~~~~~al~l~-p-~~~~a~~~la~~~~~~g~~~~ 100 (281)
.......+...|.+.+..++....+-+++|.++...++... ++..++..++.+ | ..-+.+|.+|..++.+|+|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 33455667788888888888889999999999998887655 999999999988 6 678899999999999999999
Q ss_pred HHHHHHHHHhhccCC
Q 023501 101 GIKELEKALNLGRGA 115 (281)
Q Consensus 101 A~~~~~kal~~~p~~ 115 (281)
|..+++..|+..|++
T Consensus 93 A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCC
Confidence 999999999998874
No 281
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.22 E-value=2e-05 Score=77.62 Aligned_cols=92 Identities=20% Similarity=0.189 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC---------------
Q 023501 15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDH--------------- 79 (281)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p--------------- 79 (281)
..+...|+.++..|+|++|+.+|++| ..|..+|.+|.++|++++|++.+++|...++
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHH
Confidence 45667999999999999999999996 4799999999999999999999999955443
Q ss_pred ----------cchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 80 ----------DSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 80 ----------~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
.+++.+..++..|...|.|++|+..+++++.+++.
T Consensus 1268 LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Lera 1312 (1630)
T 1xi4_A 1268 LAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERA 1312 (1630)
T ss_pred HHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChh
Confidence 14445667777888999999999999999999654
No 282
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.17 E-value=6.3e-06 Score=72.80 Aligned_cols=86 Identities=12% Similarity=-0.019 Sum_probs=70.5
Q ss_pred chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhh---
Q 023501 9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL--------CPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQL--- 77 (281)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--- 77 (281)
..+..+..+.++|.+|..+|+|++|+.+|.+++.+ .|.-+..++++|.+|..+|++++|+..+++|+++
T Consensus 324 ~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~ 403 (429)
T 3qwp_A 324 INIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRV 403 (429)
T ss_dssp TSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 46778899999999999999999999999999977 2335678999999999999999999999999886
Q ss_pred --cCcchh---HHHHHHHHHHH
Q 023501 78 --DHDSVK---GHYLLGQTLLQ 94 (281)
Q Consensus 78 --~p~~~~---a~~~la~~~~~ 94 (281)
.|+++. .+..++.+...
T Consensus 404 ~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 404 THGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HTCTTSHHHHHHHHHHHHHHHH
T ss_pred hcCCCChHHHHHHHHHHHHHHH
Confidence 355543 44445555443
No 283
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.16 E-value=1.8e-05 Score=59.43 Aligned_cols=96 Identities=11% Similarity=0.020 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc---C
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV---------PIYWTNRALCHLKRNDWTKVEADCRKAIQLD---H 79 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~---p 79 (281)
.....+.+....++..|.|+.|+-....++.+..++ +.++..+|.+++..++|..|...|++|+++. +
T Consensus 18 ~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~ 97 (167)
T 3ffl_A 18 GSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALS 97 (167)
T ss_dssp ---CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-
T ss_pred ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHh
Confidence 345568888999999999999999999977764333 3488899999999999999999999997653 1
Q ss_pred cc----------------------hhHHHHHHHHHHHhcChHHHHHHHHH
Q 023501 80 DS----------------------VKGHYLLGQTLLQRNEYADGIKELEK 107 (281)
Q Consensus 80 ~~----------------------~~a~~~la~~~~~~g~~~~A~~~~~k 107 (281)
.+ .+..|.+|.|+..+|++++|+..++.
T Consensus 98 k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 98 KTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp -------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred cCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 11 26789999999999999999998764
No 284
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.16 E-value=5.5e-06 Score=73.16 Aligned_cols=75 Identities=13% Similarity=0.058 Sum_probs=65.8
Q ss_pred chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc--
Q 023501 9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL--------CPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD-- 78 (281)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-- 78 (281)
..|..+..+.++|.+|..+|+|++|+.+|.+++.+ .|+-+..++|+|.+|..+|+|++|+..+++|+++-
T Consensus 335 ~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~ 414 (433)
T 3qww_A 335 SNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEV 414 (433)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999977 34456789999999999999999999999998864
Q ss_pred ---Ccchh
Q 023501 79 ---HDSVK 83 (281)
Q Consensus 79 ---p~~~~ 83 (281)
|+++.
T Consensus 415 ~lG~~Hp~ 422 (433)
T 3qww_A 415 AHGKDHPY 422 (433)
T ss_dssp HTCTTCHH
T ss_pred HcCCCChH
Confidence 55554
No 285
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.03 E-value=6.5e-05 Score=70.01 Aligned_cols=109 Identities=14% Similarity=-0.029 Sum_probs=96.6
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc---
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAI-DAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD--- 78 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~-~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~--- 78 (281)
+++++...|..+..|...+......|+.++|+ ..|.+|+...|.+..+|...+......|+++.|...+++++..-
T Consensus 332 Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~ 411 (679)
T 4e6h_A 332 YMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLD 411 (679)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 55667777788899999999999999999997 99999999999999999999999999999999999999999752
Q ss_pred --------Cc-----------chhHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501 79 --------HD-----------SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111 (281)
Q Consensus 79 --------p~-----------~~~a~~~la~~~~~~g~~~~A~~~~~kal~~ 111 (281)
|. ...+|..++......|..+.|...|.+|++.
T Consensus 412 ~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~ 463 (679)
T 4e6h_A 412 LAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL 463 (679)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred hhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 42 4567888899888999999999999999987
No 286
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.98 E-value=2.6e-05 Score=56.02 Aligned_cols=80 Identities=10% Similarity=-0.039 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHhC-C-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHH
Q 023501 12 KQAEQLRLDGNYYFSKDRYGA---AIDAYTEAITLC-P-NVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHY 86 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~ 86 (281)
...+.-+..|..+.+.+...+ +|..++..+... | ..-.+++.+|..++++|+|.+|..+++.+++++|.|..|.-
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 456778889999998888776 999999998887 5 56789999999999999999999999999999999988876
Q ss_pred HHHHH
Q 023501 87 LLGQT 91 (281)
Q Consensus 87 ~la~~ 91 (281)
....+
T Consensus 113 Lk~~i 117 (126)
T 1nzn_A 113 LERLI 117 (126)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 287
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.95 E-value=0.0001 Score=64.74 Aligned_cols=92 Identities=20% Similarity=0.212 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHH
Q 023501 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLL 93 (281)
Q Consensus 14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~ 93 (281)
+..+..+|..+.+.|+|++|++.|.++ +++..|...+.++...|+|+.|...... +...|++ ...+...|.
T Consensus 148 a~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Ye 218 (449)
T 1b89_A 148 VSNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE---LEELINYYQ 218 (449)
T ss_dssp TTCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH---HHHHHHHHH
T ss_pred hhhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh---HHHHHHHHH
Confidence 356778999999999999999999999 4789999999999999999999776654 4455554 446888999
Q ss_pred HhcChHHHHHHHHHHHhhccC
Q 023501 94 QRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 94 ~~g~~~~A~~~~~kal~~~p~ 114 (281)
..|++++|+..+++++.+++.
T Consensus 219 k~G~~eEai~lLe~aL~le~a 239 (449)
T 1b89_A 219 DRGYFEELITMLEAALGLERA 239 (449)
T ss_dssp HTTCHHHHHHHHHHHTTSTTC
T ss_pred HCCCHHHHHHHHHHHhCCcHH
Confidence 999999999999999999644
No 288
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.76 E-value=0.0005 Score=64.09 Aligned_cols=113 Identities=11% Similarity=-0.061 Sum_probs=94.0
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----------CCC-----------chHHHHHHHHHHH
Q 023501 2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL-----------CPN-----------VPIYWTNRALCHL 59 (281)
Q Consensus 2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----------~p~-----------~~~~~~~~a~~~~ 59 (281)
+++.++...|.....+...+......|+++.|...|++++.. .|. .+.+|...+....
T Consensus 366 il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~er 445 (679)
T 4e6h_A 366 YLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMK 445 (679)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHH
Confidence 466777777777788888899999999999999999999975 253 3457888888888
Q ss_pred HhcCHHHHHHHHHHHHhh-cCcchhHHHHHHHHHHHhcC-hHHHHHHHHHHHhhccC
Q 023501 60 KRNDWTKVEADCRKAIQL-DHDSVKGHYLLGQTLLQRNE-YADGIKELEKALNLGRG 114 (281)
Q Consensus 60 ~~~~~~~A~~~~~~al~l-~p~~~~a~~~la~~~~~~g~-~~~A~~~~~kal~~~p~ 114 (281)
..|+.+.|...+.+|++. .+.....|...|.+-...++ ++.|...|+++++..|+
T Consensus 446 R~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~ 502 (679)
T 4e6h_A 446 RIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFAT 502 (679)
T ss_dssp HHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC
Confidence 899999999999999998 55557778777877777654 89999999999999776
No 289
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.75 E-value=1.6e-05 Score=53.82 Aligned_cols=46 Identities=15% Similarity=0.154 Sum_probs=37.1
Q ss_pred cccCCcccccC-ceecCCCcccccchHHhHhccCCCCCCCCCCCcCC
Q 023501 209 CCKITLDIFRD-PVITPSGVTYERAVILDHLDKVGKFDPITREPLRE 254 (281)
Q Consensus 209 ~c~i~~~~~~~-pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~ 254 (281)
.|+.|.-.+.. ..+.||+|.||.+|+..|.......||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 47888765554 45789999999999999987665579999998753
No 290
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.71 E-value=0.00057 Score=49.27 Aligned_cols=70 Identities=14% Similarity=0.010 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHHhcC---HHHHHHHHHHHHhhcCc-chhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501 48 PIYWTNRALCHLKRND---WTKVEADCRKAIQLDHD-SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP 117 (281)
Q Consensus 48 ~~~~~~~a~~~~~~~~---~~~A~~~~~~al~l~p~-~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~ 117 (281)
+..-++.|.++.+-.+ ...++..++..++.+|. .-+.+|.+|..++.+|+|++|..+.+.++++.|++..
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 3444555555544443 33455555555555552 3455566666666666666666666666666555433
No 291
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.64 E-value=0.00093 Score=48.79 Aligned_cols=71 Identities=14% Similarity=0.006 Sum_probs=41.9
Q ss_pred chHHHHHHHHHHHHhcC---HHHHHHHHHHHHhhcC-cchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501 47 VPIYWTNRALCHLKRND---WTKVEADCRKAIQLDH-DSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP 117 (281)
Q Consensus 47 ~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~l~p-~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~ 117 (281)
.+..-++.|.++.+-.+ ..+++..++..++.+| ..-+.+|.+|..++.+|+|++|..+.+..|+..|++..
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 45555556665555443 3456666666666655 34556666666666666666666666666666665433
No 292
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.64 E-value=0.0005 Score=50.67 Aligned_cols=104 Identities=15% Similarity=-0.026 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHhCCCc--------hHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 023501 10 VAKQAEQLRLDGNYYFSKDRY------GAAIDAYTEAITLCPNV--------PIYWTNRALCHLKRNDWTKVEADCRKAI 75 (281)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~~~~------~~A~~~~~~al~~~p~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~al 75 (281)
.|.+.+.|.......-+.|+. +.-+..|++|+..-|-. ..+|...|. +..+++.++|...|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~-~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAE-LKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHH-HHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHH-HHHhcCHHHHHHHHHHHH
Confidence 456777888777777777988 88899999999987752 456666664 467899999999999999
Q ss_pred hhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 76 QLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 76 ~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
++...+++.|...|+--..+|+...|.+.+.+++.++|.
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 998889999999999999999999999999999999876
No 293
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.52 E-value=0.00071 Score=48.77 Aligned_cols=79 Identities=4% Similarity=-0.083 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHH
Q 023501 13 QAEQLRLDGNYYFSKDRY---GAAIDAYTEAITLCPN-VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLL 88 (281)
Q Consensus 13 ~a~~~~~~g~~~~~~~~~---~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (281)
.++.-++.|..+.+.++- ..+|..++..+...|. .-.+++.+|..++++|+|+.|.++++.+++++|+|..|.-..
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 456778888888877755 5799999999998884 578999999999999999999999999999999999886655
Q ss_pred HHH
Q 023501 89 GQT 91 (281)
Q Consensus 89 a~~ 91 (281)
..+
T Consensus 119 ~~I 121 (134)
T 3o48_A 119 SMV 121 (134)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 294
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.48 E-value=0.00014 Score=47.02 Aligned_cols=48 Identities=8% Similarity=0.103 Sum_probs=38.1
Q ss_pred cccccCCcccccCcee-cCCCcccccchHHhHhccCC-CCCCCCCCCcCC
Q 023501 207 YLCCKITLDIFRDPVI-TPSGVTYERAVILDHLDKVG-KFDPITREPLRE 254 (281)
Q Consensus 207 ~~~c~i~~~~~~~pv~-~~~g~~~~~~~i~~~~~~~~-~~cP~~~~~~~~ 254 (281)
.-.|.||..++..=+. ..|+|.|=..||.+||.... ..||+|+.++..
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 3469999988875332 47999999999999998652 369999988763
No 295
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.44 E-value=0.00094 Score=50.15 Aligned_cols=82 Identities=16% Similarity=0.071 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------C-------------------CchHHHHHHHHHHHHhcCH
Q 023501 10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLC------P-------------------NVPIYWTNRALCHLKRNDW 64 (281)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------p-------------------~~~~~~~~~a~~~~~~~~~ 64 (281)
+...++.+...|+.+|..++|..|...|.+|+... + .+.++.+.+|.||.+++++
T Consensus 59 p~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~ 138 (167)
T 3ffl_A 59 PPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQD 138 (167)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCH
Confidence 34467789999999999999999999999997652 1 1237889999999999999
Q ss_pred HHHHHHHHHHHhhcCcchhHHHHHHHHH
Q 023501 65 TKVEADCRKAIQLDHDSVKGHYLLGQTL 92 (281)
Q Consensus 65 ~~A~~~~~~al~l~p~~~~a~~~la~~~ 92 (281)
++|+..++.. -..-..++....||..|
T Consensus 139 ~~Ai~~Le~I-p~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 139 KDAIAILDGI-PSRQRTPKINMLLANLY 165 (167)
T ss_dssp HHHHHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred HHHHHHHhcC-CchhcCHHHHHHHHHHh
Confidence 9999887543 22234677777777654
No 296
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.37 E-value=0.0039 Score=45.51 Aligned_cols=78 Identities=4% Similarity=-0.084 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHH
Q 023501 13 QAEQLRLDGNYYFSKDRY---GAAIDAYTEAITLCPN-VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLL 88 (281)
Q Consensus 13 ~a~~~~~~g~~~~~~~~~---~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (281)
.++.-++.|..+.+..+- .++|..++..+...|. .-.+++.+|..++++|+|.+|.++++..++++|+|..|.-..
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk 117 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 117 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 567778889999888766 4799999999998884 668999999999999999999999999999999998876554
Q ss_pred HH
Q 023501 89 GQ 90 (281)
Q Consensus 89 a~ 90 (281)
..
T Consensus 118 ~~ 119 (144)
T 1y8m_A 118 SM 119 (144)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 297
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.29 E-value=5.7e-05 Score=63.09 Aligned_cols=48 Identities=15% Similarity=0.249 Sum_probs=38.0
Q ss_pred cccccCCcccccC----cee----cCCCcccccchHHhHhccCC----------CCCCCCCCCcCC
Q 023501 207 YLCCKITLDIFRD----PVI----TPSGVTYERAVILDHLDKVG----------KFDPITREPLRE 254 (281)
Q Consensus 207 ~~~c~i~~~~~~~----pv~----~~~g~~~~~~~i~~~~~~~~----------~~cP~~~~~~~~ 254 (281)
...|+||...+.+ |.. .+|||.|-..||.+|+...+ ..||.|+.+++.
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 4569999998887 532 36999999999999997521 249999999874
No 298
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=97.25 E-value=0.0099 Score=51.53 Aligned_cols=102 Identities=10% Similarity=-0.036 Sum_probs=84.6
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc----------------------hHHHHHHHHHHHHhcCHHHH
Q 023501 10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV----------------------PIYWTNRALCHLKRNDWTKV 67 (281)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~~a~~~~~~~~~~~A 67 (281)
+....+.+...|......|+.+.|+..+.+|+.+-... ..+...++.++...|++.+|
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a 190 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 190 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 44445566667777778899999999999999884321 13444577788899999999
Q ss_pred HHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501 68 EADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111 (281)
Q Consensus 68 ~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~ 111 (281)
+..+..++..+|.+-.+|..+..++...|+..+|+..|+++...
T Consensus 191 ~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 191 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887653
No 299
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=97.18 E-value=0.0099 Score=48.27 Aligned_cols=63 Identities=16% Similarity=0.191 Sum_probs=58.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhH
Q 023501 22 NYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKG 84 (281)
Q Consensus 22 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a 84 (281)
..+++.|+.++|+......|+.+|.|+.....+...+.-.|+|+.|...++-+.+++|.....
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~ 67 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 67 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence 467899999999999999999999999999999999999999999999999999999987554
No 300
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.11 E-value=0.00059 Score=42.27 Aligned_cols=48 Identities=13% Similarity=0.075 Sum_probs=37.4
Q ss_pred cccccCCcccccCceecCCC--c---ccccchHHhHhccC-CCCCCCCCCCcCC
Q 023501 207 YLCCKITLDIFRDPVITPSG--V---TYERAVILDHLDKV-GKFDPITREPLRE 254 (281)
Q Consensus 207 ~~~c~i~~~~~~~pv~~~~g--~---~~~~~~i~~~~~~~-~~~cP~~~~~~~~ 254 (281)
.-.|.||..-..+|+++||. + -|=+.||.+|+... ...||+|+.++..
T Consensus 6 ~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 44699998777788889965 3 67788999999753 3469999988764
No 301
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.01 E-value=0.016 Score=51.90 Aligned_cols=51 Identities=10% Similarity=-0.035 Sum_probs=39.1
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHH
Q 023501 3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNR 54 (281)
Q Consensus 3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 54 (281)
+++++...|..+..|...+..+...|+.+.|...|.+|+.. |.+..++...
T Consensus 202 ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y 252 (493)
T 2uy1_A 202 HNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYY 252 (493)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 44455555666788888888888999999999999999999 8876555443
No 302
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.96 E-value=0.0045 Score=58.02 Aligned_cols=80 Identities=16% Similarity=0.210 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHHHh--------CCCc----------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHH
Q 023501 29 RYGAAIDAYTEAITL--------CPNV----------PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQ 90 (281)
Q Consensus 29 ~~~~A~~~~~~al~~--------~p~~----------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~ 90 (281)
+=-+|+....++++. .+.+ ..++...+..+...|+|+-|+..+++|+...|.....|+.|+.
T Consensus 300 ~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~ 379 (754)
T 4gns_B 300 KELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLAR 379 (754)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 345677777777642 2222 3455566777778899999999999999999999999999999
Q ss_pred HHHHhcChHHHHHHHHHH
Q 023501 91 TLLQRNEYADGIKELEKA 108 (281)
Q Consensus 91 ~~~~~g~~~~A~~~~~ka 108 (281)
+|..+|+|+.|+-.++.+
T Consensus 380 vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 380 CHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccHHHHHHHHhcC
Confidence 999999999999777655
No 303
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.79 E-value=0.017 Score=51.82 Aligned_cols=84 Identities=7% Similarity=-0.017 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc-CcchhHHHHHHHHHHHhcChHHHHHHHH
Q 023501 29 RYGAAIDAYTEAITLCP-NVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD-HDSVKGHYLLGQTLLQRNEYADGIKELE 106 (281)
Q Consensus 29 ~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-p~~~~a~~~la~~~~~~g~~~~A~~~~~ 106 (281)
..+.|...|.+.....- -|...|..+-.+|.+.|++++|...+++..+.. ..+...|..+-..|...|++++|...|.
T Consensus 85 ~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~ 164 (501)
T 4g26_A 85 GLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA 164 (501)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence 46889999988766532 267888999999999999999999999987654 2357788889999999999999999999
Q ss_pred HHHhhc
Q 023501 107 KALNLG 112 (281)
Q Consensus 107 kal~~~ 112 (281)
+..+..
T Consensus 165 ~M~~~G 170 (501)
T 4g26_A 165 HMVESE 170 (501)
T ss_dssp HHHHTT
T ss_pred HHHhcC
Confidence 988763
No 304
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.67 E-value=0.0075 Score=56.54 Aligned_cols=62 Identities=19% Similarity=0.388 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 023501 13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKA 74 (281)
Q Consensus 13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 74 (281)
.+..+...+..+..+|+|+-|+....+|+...|.+...|..+|.||..+|+|+.|+-.++-+
T Consensus 336 ~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 336 MSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred chHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34577788999999999999999999999999999999999999999999999999777655
No 305
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=96.52 E-value=0.0019 Score=54.68 Aligned_cols=64 Identities=11% Similarity=0.135 Sum_probs=51.5
Q ss_pred CcccccCCcccccCcee-cCCCcc--cccchHHhHhccCCC-CCCCCCCCcCCCCCcccHHHHHHHHH
Q 023501 206 DYLCCKITLDIFRDPVI-TPSGVT--YERAVILDHLDKVGK-FDPITREPLRESQLVPNLAIKEAVRA 269 (281)
Q Consensus 206 ~~~~c~i~~~~~~~pv~-~~~g~~--~~~~~i~~~~~~~~~-~cP~~~~~~~~~~~~~n~~l~~~i~~ 269 (281)
-.+.|||+...|..|+- ..|.|. |+...+.+.....+. .||+|+..+...+|+.+..+.++++.
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~ 315 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQN 315 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTT
T ss_pred EeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHh
Confidence 45889999999999996 669997 777777766544432 59999999999999999888777654
No 306
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.47 E-value=0.079 Score=39.89 Aligned_cols=98 Identities=15% Similarity=0.125 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHH--hhc-----------
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAI--QLD----------- 78 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al--~l~----------- 78 (281)
...+.-..++..++-.|+|..|+-++.. -+.....+-.+.||.++++|..|+..++..+ +.+
T Consensus 31 ~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ 105 (242)
T 3kae_A 31 CKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQE 105 (242)
T ss_dssp ---CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHT
T ss_pred CChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccce
Confidence 3344556778899999999999887633 2345666668899999999999999999999 333
Q ss_pred ----Ccchh-HHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 79 ----HDSVK-GHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 79 ----p~~~~-a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
|.+-+ .+..+|.++.+.|+.++|+.++...+...|-
T Consensus 106 ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~l 146 (242)
T 3kae_A 106 MFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFL 146 (242)
T ss_dssp TSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred eeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccc
Confidence 34444 4456799999999999999999999888654
No 307
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.44 E-value=0.071 Score=47.77 Aligned_cols=99 Identities=10% Similarity=0.005 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc-CcchhHHHHHHHH
Q 023501 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLC-PNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD-HDSVKGHYLLGQT 91 (281)
Q Consensus 14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-p~~~~a~~~la~~ 91 (281)
...+..+-..+.+.|++++|...|.+..... .-+...|..+-.+|.+.|++++|.+.+++..+.. ..+...|..+-.+
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~ 184 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKV 184 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 4456777888999999999999999987653 2257788888889999999999999999987764 2356788899999
Q ss_pred HHHhcChHHHHHHHHHHHhhc
Q 023501 92 LLQRNEYADGIKELEKALNLG 112 (281)
Q Consensus 92 ~~~~g~~~~A~~~~~kal~~~ 112 (281)
+...|++++|...+++..+..
T Consensus 185 ~~~~g~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 185 SMDTKNADKVYKTLQRLRDLV 205 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT
T ss_pred HhhCCCHHHHHHHHHHHHHhC
Confidence 999999999999999987764
No 308
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=96.15 E-value=0.0042 Score=52.47 Aligned_cols=65 Identities=14% Similarity=0.132 Sum_probs=52.5
Q ss_pred CCcccccCCcccccCcee-cCCCcc--cccchHHhHhccCCC-CCCCCCCCcCCCCCcccHHHHHHHHH
Q 023501 205 PDYLCCKITLDIFRDPVI-TPSGVT--YERAVILDHLDKVGK-FDPITREPLRESQLVPNLAIKEAVRA 269 (281)
Q Consensus 205 p~~~~c~i~~~~~~~pv~-~~~g~~--~~~~~i~~~~~~~~~-~cP~~~~~~~~~~~~~n~~l~~~i~~ 269 (281)
.-.+.|||+...|..|+- ..|.|. |+...+.+.....+. .||+|++.+...+|+-+..+.+++..
T Consensus 213 ~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 213 RVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND 281 (360)
T ss_dssp EEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred EEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence 346789999999999996 668887 888877776654443 59999999999999999888777653
No 309
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.97 E-value=0.0026 Score=43.89 Aligned_cols=31 Identities=16% Similarity=0.221 Sum_probs=27.3
Q ss_pred cccccCCcc-cccCcee--cCCCcccccchHHhH
Q 023501 207 YLCCKITLD-IFRDPVI--TPSGVTYERAVILDH 237 (281)
Q Consensus 207 ~~~c~i~~~-~~~~pv~--~~~g~~~~~~~i~~~ 237 (281)
++.|+||.+ .+.+||. +.|||+||+.|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 578999996 4788998 899999999999983
No 310
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.96 E-value=0.075 Score=47.47 Aligned_cols=80 Identities=15% Similarity=0.078 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHH
Q 023501 15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQ 94 (281)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~ 94 (281)
..+..+|+..-.+..+..|..+|.+|+.+.|++...|+.+|.+....|+.-+|+-+|-+++-....++.+.-++...+..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 35677899999999999999999999999999999999999999999999999999999998887888898888887765
No 311
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=95.91 E-value=0.087 Score=47.08 Aligned_cols=95 Identities=11% Similarity=-0.089 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCcchhHHHHHHHH
Q 023501 13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRN-DWTKVEADCRKAIQLDHDSVKGHYLLGQT 91 (281)
Q Consensus 13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~p~~~~a~~~la~~ 91 (281)
....|...+....+.++.+.|...|.+| ...+....+|...|..-+..+ +.+.|...++.+++.-|+.+..+..++..
T Consensus 285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~ 363 (493)
T 2uy1_A 285 LDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3456677777777788899999999999 433335667777777666666 59999999999999989988888888888
Q ss_pred HHHhcChHHHHHHHHHH
Q 023501 92 LLQRNEYADGIKELEKA 108 (281)
Q Consensus 92 ~~~~g~~~~A~~~~~ka 108 (281)
....|+.+.|...|+++
T Consensus 364 e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 364 LLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHTCHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 88999999999999887
No 312
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.62 E-value=0.15 Score=44.06 Aligned_cols=94 Identities=10% Similarity=-0.043 Sum_probs=75.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCC------chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc---Ccc----hhH
Q 023501 18 RLDGNYYFSKDRYGAAIDAYTEAITLCPN------VPIYWTNRALCHLKRNDWTKVEADCRKAIQLD---HDS----VKG 84 (281)
Q Consensus 18 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~---p~~----~~a 84 (281)
..+|..|+..|+|.+|...+++....-.. ...++......|..++++.++...+.+|.+.. +.+ +..
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 37899999999999999999998775222 24678888999999999999999999987654 122 334
Q ss_pred HHHHHHHHH-HhcChHHHHHHHHHHHhh
Q 023501 85 HYLLGQTLL-QRNEYADGIKELEKALNL 111 (281)
Q Consensus 85 ~~~la~~~~-~~g~~~~A~~~~~kal~~ 111 (281)
...-|.+++ ..++|..|...|-.++..
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 455688888 899999999999999855
No 313
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.48 E-value=0.062 Score=47.15 Aligned_cols=98 Identities=15% Similarity=0.040 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc---Ccc---hhH
Q 023501 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN---VPIYWTNRALCHLKRNDWTKVEADCRKAIQLD---HDS---VKG 84 (281)
Q Consensus 14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~---p~~---~~a 84 (281)
...+..+|..+++.|++++|++.|.++.....+ -..++.....++...++|..+...+.++-.+- +++ .+.
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 446778999999999999999999999876443 35788888889999999999999999986553 221 234
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501 85 HYLLGQTLLQRNEYADGIKELEKALNL 111 (281)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~kal~~ 111 (281)
....|.++...++|.+|...|..++..
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 455678888899999999999988766
No 314
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.44 E-value=0.099 Score=42.44 Aligned_cols=58 Identities=10% Similarity=0.032 Sum_probs=55.1
Q ss_pred HHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 57 CHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 57 ~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
-+++.|+.++|+..+...++.+|.+......+.+.++-.|+|+.|.+.++.+.+++|.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 3567899999999999999999999999999999999999999999999999999887
No 315
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.26 E-value=0.12 Score=37.99 Aligned_cols=106 Identities=14% Similarity=0.030 Sum_probs=77.2
Q ss_pred HHhCCCchHHHHHHHHHHHHhcCH------HHHHHHHHHHHhhcCc--------chhHHHHHHHHHHHhcChHHHHHHHH
Q 023501 41 ITLCPNVPIYWTNRALCHLKRNDW------TKVEADCRKAIQLDHD--------SVKGHYLLGQTLLQRNEYADGIKELE 106 (281)
Q Consensus 41 l~~~p~~~~~~~~~a~~~~~~~~~------~~A~~~~~~al~l~p~--------~~~a~~~la~~~~~~g~~~~A~~~~~ 106 (281)
|-+.|++++.|.......-+.|+. +.-++.|++|+..-|. ++..|.+.|.. ...++.++|.+.|+
T Consensus 6 ~~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~ 84 (161)
T 4h7y_A 6 IMMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQ 84 (161)
T ss_dssp ----CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHH
T ss_pred eeeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHH
Confidence 346899999999998888888998 8889999999988774 34556666654 67799999999999
Q ss_pred HHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023501 107 KALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKH 163 (281)
Q Consensus 107 kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (281)
.++.+... + ..++ +..++-+.|.+....+.+.+.++++..+
T Consensus 85 ~a~~~hKk------F-AKiw---------i~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 85 MARANCKK------F-AFVH---------ISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHHHHCTT------B-HHHH---------HHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhHH------H-HHHH---------HHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 99998332 1 2333 3334445567888888888888887543
No 316
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.77 E-value=0.76 Score=40.40 Aligned_cols=101 Identities=13% Similarity=0.095 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCC-----chHHHHHHHHHHHHhcCHHHHHHHHHHHHh---hcCcc
Q 023501 11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL-CPN-----VPIYWTNRALCHLKRNDWTKVEADCRKAIQ---LDHDS 81 (281)
Q Consensus 11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---l~p~~ 81 (281)
...+.....++..+...|+|.+|...+.....- ... -..++......|...++|..|...++++.. -.+..
T Consensus 134 ~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~ 213 (445)
T 4b4t_P 134 VERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKY 213 (445)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCc
Confidence 346777788999999999999999999886532 211 146788889999999999999999998742 12222
Q ss_pred ----hhHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501 82 ----VKGHYLLGQTLLQRNEYADGIKELEKALNL 111 (281)
Q Consensus 82 ----~~a~~~la~~~~~~g~~~~A~~~~~kal~~ 111 (281)
...+...|..+...++|.+|..+|..++..
T Consensus 214 ~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 214 ESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 346677789999999999999999999876
No 317
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.44 E-value=0.51 Score=35.79 Aligned_cols=25 Identities=8% Similarity=-0.161 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Q 023501 15 EQLRLDGNYYFSKDRYGAAIDAYTE 39 (281)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~A~~~~~~ 39 (281)
..|+.+|...+..|+++-|..+|.+
T Consensus 35 ~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 35 ITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3444555555555555555555444
No 318
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=94.41 E-value=0.18 Score=45.03 Aligned_cols=62 Identities=15% Similarity=0.021 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501 50 YWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111 (281)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~ 111 (281)
++..+|....-...+..|..+|.+|+.+.|.++..|..+|.+....|+.-+|+-+|.+++..
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~ 215 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence 44455666555667899999999999999999999999999999999999999999998865
No 319
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.32 E-value=0.31 Score=42.07 Aligned_cols=65 Identities=11% Similarity=0.038 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQ 76 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 76 (281)
....++..++..++..|++.+|+..+..++..+|.+-.+|..+-.++...|+..+|+..|+++-+
T Consensus 169 ~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 169 DKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33456667888899999999999999999999999999999999999999999999999988754
No 320
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.94 E-value=0.6 Score=43.70 Aligned_cols=81 Identities=11% Similarity=0.081 Sum_probs=56.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh--------hcCcchhHHHHHHHHH
Q 023501 21 GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQ--------LDHDSVKGHYLLGQTL 92 (281)
Q Consensus 21 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--------l~p~~~~a~~~la~~~ 92 (281)
...++..|++++|.+... ..++...|..+|..+.+.++++.|...|.++=. ....+.+.+..++...
T Consensus 659 f~~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 659 FELALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred eehhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHH
Confidence 345677888998888753 335678889999999999999999888877521 1234555566667777
Q ss_pred HHhcChHHHHHHHH
Q 023501 93 LQRNEYADGIKELE 106 (281)
Q Consensus 93 ~~~g~~~~A~~~~~ 106 (281)
...|++..|...|.
T Consensus 734 ~~~~~~~~A~~~~~ 747 (814)
T 3mkq_A 734 ETTGKFNLAFNAYW 747 (814)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCchHHHHHHHH
Confidence 67777766665554
No 321
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=92.76 E-value=0.11 Score=41.52 Aligned_cols=49 Identities=8% Similarity=0.102 Sum_probs=38.5
Q ss_pred cccccCCcccccCcee-cCCCcccccchHHhHhccCC-CCCCCCCCCcCCC
Q 023501 207 YLCCKITLDIFRDPVI-TPSGVTYERAVILDHLDKVG-KFDPITREPLRES 255 (281)
Q Consensus 207 ~~~c~i~~~~~~~pv~-~~~g~~~~~~~i~~~~~~~~-~~cP~~~~~~~~~ 255 (281)
-..|.+|..+...-+. ..|++.|=..|+..|+.... ..||.|+.+.+..
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 4469999988886553 34999999999999997643 3599999987643
No 322
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.75 E-value=0.26 Score=43.92 Aligned_cols=80 Identities=6% Similarity=-0.077 Sum_probs=62.2
Q ss_pred chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc-----CcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcch
Q 023501 47 VPIYWTNRALCHLKRNDWTKVEADCRKAIQLD-----HDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYI 121 (281)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-----p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~ 121 (281)
.+.++..+-..|+..+.|+.|.....++.-.. +.....+|.+|.++.-.++|.+|.+++..|+..+|.......+
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gf 309 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGF 309 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHH
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhH
Confidence 46778888889999999999999999984221 1236778889999999999999999999999998865444333
Q ss_pred HHHHH
Q 023501 122 VEDIW 126 (281)
Q Consensus 122 ~~~~~ 126 (281)
...+.
T Consensus 310 r~~a~ 314 (523)
T 4b4t_S 310 LQQSN 314 (523)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
No 323
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=92.08 E-value=4 Score=35.11 Aligned_cols=99 Identities=11% Similarity=0.011 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC----------------------CCc-----------------------
Q 023501 13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLC----------------------PNV----------------------- 47 (281)
Q Consensus 13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----------------------p~~----------------------- 47 (281)
.-.+...+|..|.+.|++++-..+.......- |+.
T Consensus 18 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~fl 97 (394)
T 3txn_A 18 KEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999988777665443221 221
Q ss_pred -hHHHHHHHHHHHHhcCHHHHHHHHHHHHhh----cC--cchhHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501 48 -PIYWTNRALCHLKRNDWTKVEADCRKAIQL----DH--DSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111 (281)
Q Consensus 48 -~~~~~~~a~~~~~~~~~~~A~~~~~~al~l----~p--~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~ 111 (281)
..+-..+|..|+..|+|.+|...+.+..+- |. .-.+.+..-.++|..++++.++...+.++...
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~ 168 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTT 168 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 012236777888888888887777666542 21 22456666677788888888888888877766
No 324
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=92.06 E-value=3.3 Score=40.30 Aligned_cols=97 Identities=7% Similarity=-0.127 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc-CcchhHHHHHH
Q 023501 15 EQLRLDGNYYFSKDRYGAAIDAYTEAITL----CPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD-HDSVKGHYLLG 89 (281)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-p~~~~a~~~la 89 (281)
..+..+-+.+.+.|+.++|...|....+. -.-|...|+-+-..|.+.|++++|.+.+++-.+.. .-+...|..+-
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 35778888999999999999999764322 22367889999999999999999999999987655 23567778888
Q ss_pred HHHHHhcCh-HHHHHHHHHHHhh
Q 023501 90 QTLLQRNEY-ADGIKELEKALNL 111 (281)
Q Consensus 90 ~~~~~~g~~-~~A~~~~~kal~~ 111 (281)
.++...|+. ++|...|++....
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHc
Confidence 889998885 6777777766554
No 325
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=91.65 E-value=0.33 Score=32.55 Aligned_cols=50 Identities=24% Similarity=0.406 Sum_probs=39.7
Q ss_pred CCcccccCCcccccCceecC--CC----cccccchHHhHhccCCCCCCCCCCCcCCC
Q 023501 205 PDYLCCKITLDIFRDPVITP--SG----VTYERAVILDHLDKVGKFDPITREPLRES 255 (281)
Q Consensus 205 p~~~~c~i~~~~~~~pv~~~--~g----~~~~~~~i~~~~~~~~~~cP~~~~~~~~~ 255 (281)
+..+.|||+..+-..-|... .| .-|++..+.+.+..+.. -|++|+|++..
T Consensus 25 ee~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~~~~-HPLSREpit~s 80 (102)
T 2kkx_A 25 LEAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGEGLP-HPLTREPITAS 80 (102)
T ss_dssp TGGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHHTCC-CTTTCCCCCTT
T ss_pred HHHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhcCCC-CCCccCCCCHh
Confidence 46788999999988888533 33 34889999999887774 89999999865
No 326
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=91.46 E-value=5.4 Score=33.16 Aligned_cols=60 Identities=10% Similarity=-0.103 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhhccCCC-CCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 85 HYLLGQTLLQRNEYADGIKELEKALNLGRGAK-PKGYIVEDIWQELARAKYLLWEQESSKR 144 (281)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 144 (281)
....|.-+...|++.+|+..|+.+|-..|-.. +......++.+.+..+..++-....+..
T Consensus 117 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~ 177 (325)
T 3mv2_A 117 KMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELE 177 (325)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45668888899999999999999998876432 2233566777778877777666555443
No 327
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.95 E-value=0.61 Score=46.17 Aligned_cols=91 Identities=8% Similarity=-0.010 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----------------------CCchHHHHHHHHHHHHhcCHHHHHHHHH
Q 023501 16 QLRLDGNYYFSKDRYGAAIDAYTEAITLC-----------------------PNVPIYWTNRALCHLKRNDWTKVEADCR 72 (281)
Q Consensus 16 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----------------------p~~~~~~~~~a~~~~~~~~~~~A~~~~~ 72 (281)
.-+.+|..++..|++++|..+|.+|-..- ...+.+|......+.+.+.++.+++...
T Consensus 844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~ 923 (1139)
T 4fhn_B 844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 923 (1139)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34789999999999999999998873211 1124677888888889999999999999
Q ss_pred HHHhhcCcch-----hHHHHHHHHHHHhcChHHHHHHHH
Q 023501 73 KAIQLDHDSV-----KGHYLLGQTLLQRNEYADGIKELE 106 (281)
Q Consensus 73 ~al~l~p~~~-----~a~~~la~~~~~~g~~~~A~~~~~ 106 (281)
.|++..+... ..|.++-..+..+|+|++|...+.
T Consensus 924 lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 924 LADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp HHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred HHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 9998764322 256777888999999999987764
No 328
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=90.67 E-value=2.8 Score=39.16 Aligned_cols=75 Identities=16% Similarity=0.077 Sum_probs=53.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcC
Q 023501 18 RLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNE 97 (281)
Q Consensus 18 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~ 97 (281)
......+-+.|.+++|+...+ ++.... .....+|+++.|.+.++. .++...|..+|..+.+.|+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~--------~~~~~f---~~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~ 696 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP--------DQDQKF---ELALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFN 696 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC--------CHHHHH---HHHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCChHHheecCC--------Ccchhe---ehhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCC
Confidence 344445566777777776542 232222 234678999999887632 2567889999999999999
Q ss_pred hHHHHHHHHHH
Q 023501 98 YADGIKELEKA 108 (281)
Q Consensus 98 ~~~A~~~~~ka 108 (281)
++.|+..|.++
T Consensus 697 ~~~A~~~y~~~ 707 (814)
T 3mkq_A 697 FKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99999998875
No 329
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=90.34 E-value=1.6 Score=40.11 Aligned_cols=91 Identities=13% Similarity=0.075 Sum_probs=62.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcCh
Q 023501 19 LDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEY 98 (281)
Q Consensus 19 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~ 98 (281)
.+|..++..+...++...+.++.....++ ...-.++...+..|+|+.|...+.+.-.-.....+..|.+|.++..+|+.
T Consensus 257 ~ia~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~ 335 (618)
T 1qsa_A 257 IVAWRLMGNDVTDEQAKWRDDAIMRSQST-SLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGRE 335 (618)
T ss_dssp HHHHTSCSTTCCHHHHHHHHHHHHTCCCH-HHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCChHHHHHHHhccccCCCh-HHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCH
Confidence 34444444553446666666655444333 33444444456779999999988765554445688899999999999999
Q ss_pred HHHHHHHHHHHh
Q 023501 99 ADGIKELEKALN 110 (281)
Q Consensus 99 ~~A~~~~~kal~ 110 (281)
++|...|.++..
T Consensus 336 ~~a~~~~~~~a~ 347 (618)
T 1qsa_A 336 AEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999888764
No 330
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=88.75 E-value=1.1 Score=29.97 Aligned_cols=11 Identities=36% Similarity=0.374 Sum_probs=4.8
Q ss_pred HHHHHHHHHhh
Q 023501 101 GIKELEKALNL 111 (281)
Q Consensus 101 A~~~~~kal~~ 111 (281)
|++.|..++..
T Consensus 41 Aie~l~~alk~ 51 (93)
T 1wfd_A 41 GIDMLLQVLKG 51 (93)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 33444444444
No 331
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=88.58 E-value=4.2 Score=30.71 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=37.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 023501 22 NYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKA 74 (281)
Q Consensus 22 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 74 (281)
....+.|+++.|.+..... ++...|..+|...+..|+++-|...|.++
T Consensus 13 ~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 4456778888888886653 56778888888888888888888877765
No 332
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=87.23 E-value=7.7 Score=29.03 Aligned_cols=15 Identities=13% Similarity=0.071 Sum_probs=9.7
Q ss_pred CCCcccccCCccccc
Q 023501 204 VPDYLCCKITLDIFR 218 (281)
Q Consensus 204 ~p~~~~c~i~~~~~~ 218 (281)
.+..+.|++|+-+..
T Consensus 135 ~~~~~~C~~CG~i~~ 149 (170)
T 3pwf_A 135 IKKVYICPICGYTAV 149 (170)
T ss_dssp CSCEEECTTTCCEEE
T ss_pred CCCeeEeCCCCCeeC
Confidence 456677887765554
No 333
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=86.47 E-value=1.7 Score=28.73 Aligned_cols=34 Identities=24% Similarity=0.275 Sum_probs=24.6
Q ss_pred chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023501 9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAIT 42 (281)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~ 42 (281)
.+...|..+-.++..+.+.|+|++||.+..+|..
T Consensus 10 spLn~AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 10 GPLNLAHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3445677777788888888888888887666544
No 334
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=86.36 E-value=21 Score=34.89 Aligned_cols=65 Identities=6% Similarity=-0.115 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhh----cCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhc
Q 023501 48 PIYWTNRALCHLKRNDWTKVEADCRKAIQL----DHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLG 112 (281)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l----~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~ 112 (281)
...|+.+-.+|.+.|+.++|...+.+..+. -.-+...|..+-..|...|++++|.+.|.+.....
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G 195 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 356888888999999999999999765432 13467899999999999999999999999988763
No 335
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=85.70 E-value=13 Score=30.72 Aligned_cols=94 Identities=13% Similarity=0.053 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------------------------CCCchHHHHHHHHHHHHhcCHH-H
Q 023501 13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITL-------------------------CPNVPIYWTNRALCHLKRNDWT-K 66 (281)
Q Consensus 13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-------------------------~p~~~~~~~~~a~~~~~~~~~~-~ 66 (281)
.-+.+..+.+.|.++++|++|++.+...... .|-+......+..++.....-+ .
T Consensus 32 AhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~ 111 (312)
T 2wpv_A 32 AHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPN 111 (312)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCch
Confidence 3456677788888888888888885544322 1111222222222222211100 0
Q ss_pred HHHHHHHHHhhc-------CcchhHHHHHHHHHHHhcChHHHHHHHH
Q 023501 67 VEADCRKAIQLD-------HDSVKGHYLLGQTLLQRNEYADGIKELE 106 (281)
Q Consensus 67 A~~~~~~al~l~-------p~~~~a~~~la~~~~~~g~~~~A~~~~~ 106 (281)
=.+..++|++-. -.++..|..+|..|..-|++.+|..+|-
T Consensus 112 r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 112 LKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 112233333221 1467899999999999999999998875
No 336
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=85.48 E-value=1.6 Score=28.48 Aligned_cols=16 Identities=25% Similarity=0.329 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHhhccC
Q 023501 99 ADGIKELEKALNLGRG 114 (281)
Q Consensus 99 ~~A~~~~~kal~~~p~ 114 (281)
.+|++.|.+++...|+
T Consensus 43 ~~aie~l~~alk~e~d 58 (83)
T 2w2u_A 43 KKAIEVLAQLVSLYRD 58 (83)
T ss_dssp HHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHCCC
Confidence 4455555666665554
No 337
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=85.41 E-value=5.2 Score=29.01 Aligned_cols=92 Identities=15% Similarity=0.116 Sum_probs=58.1
Q ss_pred HHHHHHHHHH--HhcCCHHHHHHHHHHHHHhCCCchHHHHHHHH-HHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHH
Q 023501 15 EQLRLDGNYY--FSKDRYGAAIDAYTEAITLCPNVPIYWTNRAL-CHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQT 91 (281)
Q Consensus 15 ~~~~~~g~~~--~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~-~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~ 91 (281)
+.+-..|..+ -..|+...-+.+|-+. ..++. |..+|. .+...|.-++--+.+...+..++-++..++.+|.+
T Consensus 60 ~vLd~IGkiFDis~C~NlKrVi~C~~~~----n~~se-~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~A 134 (172)
T 1wy6_A 60 QVLDKIGSYFDLDKCQNLKSVVECGVIN----NTLNE-HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANA 134 (172)
T ss_dssp HHHHHHGGGSCGGGCSCTHHHHHHHHHT----TCCCH-HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHH
T ss_pred HHHHHHhhhcCcHhhhcHHHHHHHHHHh----cchHH-HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3444445443 3556667777776442 22222 333443 34456666665556666566677778888999999
Q ss_pred HHHhcChHHHHHHHHHHHhh
Q 023501 92 LLQRNEYADGIKELEKALNL 111 (281)
Q Consensus 92 ~~~~g~~~~A~~~~~kal~~ 111 (281)
|...|+..+|-+.+.+|-+-
T Consensus 135 y~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 135 LRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHT
T ss_pred HHHhcchhhHHHHHHHHHHh
Confidence 99999999998888888766
No 338
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=85.38 E-value=0.48 Score=31.45 Aligned_cols=47 Identities=15% Similarity=0.076 Sum_probs=34.4
Q ss_pred cccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCC
Q 023501 207 YLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRES 255 (281)
Q Consensus 207 ~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~ 255 (281)
.+.|..|=--++ -.+.-+.|-.|..||..-+..+.. ||+|+.+|..+
T Consensus 28 ~~nCKsCWf~~k-~LV~C~dHYLCl~CLtlmL~~Sdr-CpIC~~pLPtk 74 (99)
T 2ko5_A 28 PQFCKSCWFENK-GLVECNNHYLCLNCLTLLLSVSNR-CPICKMPLPTK 74 (99)
T ss_dssp CCCCCSSCSCCS-SEEECSSCEEEHHHHHHTCSSSSE-ETTTTEECCCC
T ss_pred cccChhhccccC-CeeeecchhhHHHHHHHHHhhccC-CcccCCcCCcc
Confidence 355666653333 345566799999999999987774 99999998754
No 339
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=84.98 E-value=11 Score=28.52 Aligned_cols=70 Identities=9% Similarity=-0.038 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--h---------------CCCchH-HHHHHHHHHHHhcCHHHHHHHHHHHH
Q 023501 14 AEQLRLDGNYYFSKDRYGAAIDAYTEAIT--L---------------CPNVPI-YWTNRALCHLKRNDWTKVEADCRKAI 75 (281)
Q Consensus 14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~--~---------------~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al 75 (281)
+....-.+..+.+.++|..|+...+..+. . +|.|-+ ++..+|..+-+.|+-++|+..+....
T Consensus 62 ~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 62 CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 55666778889999999999999999982 2 233444 55567889999999999999999999
Q ss_pred hhcCcchh
Q 023501 76 QLDHDSVK 83 (281)
Q Consensus 76 ~l~p~~~~ 83 (281)
..+|-++.
T Consensus 142 ~~~~lf~~ 149 (242)
T 3kae_A 142 GKSFLFSP 149 (242)
T ss_dssp HHCCCHHH
T ss_pred CCccccch
Confidence 98875543
No 340
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.90 E-value=5.8 Score=34.50 Aligned_cols=68 Identities=12% Similarity=0.020 Sum_probs=57.4
Q ss_pred chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC---cchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 47 VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDH---DSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p---~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
...++..+|..|...|++++|.+.+.++..... .-...++....++...++|..+...+.++..+...
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~ 200 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK 200 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc
Confidence 346788899999999999999999999876542 34678888889999999999999999999877544
No 341
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=84.45 E-value=2.2 Score=27.99 Aligned_cols=32 Identities=25% Similarity=0.262 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023501 11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAIT 42 (281)
Q Consensus 11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~ 42 (281)
+..|..+...|...-..|+|++|+.+|..|++
T Consensus 13 ~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 13 STAAATVLKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44566666677777777777777777766665
No 342
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=84.29 E-value=2.1 Score=27.96 Aligned_cols=31 Identities=19% Similarity=0.202 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAIT 42 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~ 42 (281)
..|..+...|...=+.|+|++|+.+|..+++
T Consensus 17 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 17 EMARKYAINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4556667777777777888888777777665
No 343
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.27 E-value=3 Score=37.17 Aligned_cols=70 Identities=13% Similarity=0.111 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc-------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501 11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV-------PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV 82 (281)
Q Consensus 11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 82 (281)
..++..+..+-..|+..+.|+.|..+..++. .|.. ..+++..|.++.-.++|.+|...+..|+...|.+.
T Consensus 228 ~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 228 ETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred chhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 4567888889999999999999999999984 4432 46778889999999999999999999999887653
No 344
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=83.58 E-value=19 Score=30.21 Aligned_cols=95 Identities=15% Similarity=0.096 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-C------------------------CCchHHHHHHHHHHHHhcC---
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL-C------------------------PNVPIYWTNRALCHLKRND--- 63 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~------------------------p~~~~~~~~~a~~~~~~~~--- 63 (281)
+.-+.+..+.+.|.++++|++|++.+...... - |-+......+..++.....
T Consensus 33 EAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p 112 (336)
T 3lpz_A 33 EAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEP 112 (336)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCH
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCc
Confidence 34456777888888999999998875443221 0 1111222223333322221
Q ss_pred -----HHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHH
Q 023501 64 -----WTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELE 106 (281)
Q Consensus 64 -----~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~ 106 (281)
..+|+.+..+.=...-.++..|..+|..|..-+++.+|..+|-
T Consensus 113 ~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 113 VRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp HHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 1223333322101112468899999999999999999998873
No 345
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=83.54 E-value=1.9 Score=28.07 Aligned_cols=16 Identities=19% Similarity=0.162 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHhhccC
Q 023501 99 ADGIKELEKALNLGRG 114 (281)
Q Consensus 99 ~~A~~~~~kal~~~p~ 114 (281)
.+|++.|.+++...|+
T Consensus 35 ~~aie~l~~~lk~e~d 50 (83)
T 2v6y_A 35 KKAIEVLSQIIVLYPE 50 (83)
T ss_dssp HHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHCCC
Confidence 4445555566655544
No 346
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=83.37 E-value=2 Score=27.27 Aligned_cols=32 Identities=25% Similarity=0.524 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501 86 YLLGQTLLQRNEYADGIKELEKALNLGRGAKP 117 (281)
Q Consensus 86 ~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~ 117 (281)
..+|+.+...|++++|+.+|-+|+..+|.+..
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 56799999999999999999999999987433
No 347
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=82.71 E-value=2.6 Score=27.47 Aligned_cols=31 Identities=19% Similarity=0.142 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAIT 42 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~ 42 (281)
..|..+...|...=+.|+|++|+.+|..+++
T Consensus 9 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 9 DMARKYAILAVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4555666667777777777777777766665
No 348
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=82.07 E-value=0.73 Score=32.52 Aligned_cols=49 Identities=16% Similarity=0.099 Sum_probs=38.5
Q ss_pred CcccccCCcccccC---ceecCCCcccccchHHhHhccCCCCCCCCCCCcCCC
Q 023501 206 DYLCCKITLDIFRD---PVITPSGVTYERAVILDHLDKVGKFDPITREPLRES 255 (281)
Q Consensus 206 ~~~~c~i~~~~~~~---pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~ 255 (281)
.-|.|..|...+.+ .-...+|..||+.|..+-+...+ .|-.|++++...
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~-~C~~C~~~I~~~ 82 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSG-AGGSGGHMGSGG 82 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCC-SSSCSSCCSCCE
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCC-ccccCCCCcCch
Confidence 45899999999863 45678999999999988775433 499999888754
No 349
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=81.86 E-value=8.3 Score=25.00 Aligned_cols=9 Identities=33% Similarity=0.014 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 023501 66 KVEADCRKA 74 (281)
Q Consensus 66 ~A~~~~~~a 74 (281)
.|+....+|
T Consensus 12 ~A~~l~~~A 20 (85)
T 2v6x_A 12 KGIELVQKA 20 (85)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 350
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=81.62 E-value=0.27 Score=32.78 Aligned_cols=41 Identities=17% Similarity=0.124 Sum_probs=28.3
Q ss_pred cccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcC
Q 023501 207 YLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLR 253 (281)
Q Consensus 207 ~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~ 253 (281)
+..||.|...|. ...|+.+|..|=..+.. .. .||-|+++|.
T Consensus 32 ~~~CP~Cq~eL~----~~g~~~hC~~C~~~f~~-~a-~CPdC~q~Le 72 (101)
T 2jne_A 32 ELHCPQCQHVLD----QDNGHARCRSCGEFIEM-KA-LCPDCHQPLQ 72 (101)
T ss_dssp CCBCSSSCSBEE----EETTEEEETTTCCEEEE-EE-ECTTTCSBCE
T ss_pred cccCccCCCcce----ecCCEEECccccchhhc-cc-cCcchhhHHH
Confidence 378999996554 23455569999665443 33 4999999875
No 351
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=81.33 E-value=23 Score=34.30 Aligned_cols=90 Identities=19% Similarity=0.050 Sum_probs=68.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh-hcC------------------
Q 023501 19 LDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQ-LDH------------------ 79 (281)
Q Consensus 19 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-l~p------------------ 79 (281)
.+...+...|.++-|.. .+..-|.++..-+-+|.+|+..|++++|...+++|-. +..
T Consensus 815 ~l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~ 890 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 890 (950)
T ss_dssp HHHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHT
T ss_pred HHHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcc
Confidence 35677788888876544 3566777877778899999999999999999988742 111
Q ss_pred ----cchhHHHHHHHHHHHhcChHHHHHHHHHHHhhc
Q 023501 80 ----DSVKGHYLLGQTLLQRNEYADGIKELEKALNLG 112 (281)
Q Consensus 80 ----~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~ 112 (281)
.....|.....++...+-++-+++..+.|+...
T Consensus 891 e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~ 927 (950)
T 4gq2_M 891 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK 927 (950)
T ss_dssp TTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred cccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Confidence 012366777888888899999999999999764
No 352
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=80.86 E-value=23 Score=29.39 Aligned_cols=61 Identities=7% Similarity=-0.002 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhhccCCC-CCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 023501 84 GHYLLGQTLLQRNEYADGIKELEKALNLGRGAK-PKGYIVEDIWQELARAKYLLWEQESSKR 144 (281)
Q Consensus 84 a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 144 (281)
.....|.-+...|++.+|+..|+.+|-..|-.. +......++.+.+..+..++-....+..
T Consensus 104 ~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~ 165 (320)
T 3mkr_B 104 QRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETE 165 (320)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678888889999999999999998876432 2333456677777777777665554443
No 353
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=80.72 E-value=17 Score=27.71 Aligned_cols=8 Identities=25% Similarity=0.521 Sum_probs=6.8
Q ss_pred CCCCCCCC
Q 023501 244 FDPITREP 251 (281)
Q Consensus 244 ~cP~~~~~ 251 (281)
.||+|+.+
T Consensus 173 ~CP~C~~~ 180 (191)
T 1lko_A 173 LCPACAHP 180 (191)
T ss_dssp BCTTTCCB
T ss_pred CCCCCcCC
Confidence 59999976
No 354
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=80.16 E-value=16 Score=27.07 Aligned_cols=29 Identities=7% Similarity=0.173 Sum_probs=19.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 023501 17 LRLDGNYYFSKDRYGAAIDAYTEAITLCP 45 (281)
Q Consensus 17 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p 45 (281)
-...|..+|..|+|-+|-+.++.+-...+
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~ 63 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYG 63 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcC
Confidence 34566777777777777777777655543
No 355
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=79.40 E-value=6.3 Score=25.81 Aligned_cols=49 Identities=16% Similarity=0.130 Sum_probs=34.2
Q ss_pred CcccccCCccccc-----Ccee--cCCCcccccchHHhHhccCCCCCCCCCCCcCC
Q 023501 206 DYLCCKITLDIFR-----DPVI--TPSGVTYERAVILDHLDKVGKFDPITREPLRE 254 (281)
Q Consensus 206 ~~~~c~i~~~~~~-----~pv~--~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~ 254 (281)
..-.|.||++-.- +|-+ ..|+...||.|.+-=.......||.|+.++..
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 4457899975411 2322 34888999999987766555569999988863
No 356
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=78.18 E-value=6.6 Score=24.81 Aligned_cols=32 Identities=22% Similarity=0.358 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCchH
Q 023501 18 RLDGNYYFSKDRYGAAIDAYTEAITLCPNVPI 49 (281)
Q Consensus 18 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 49 (281)
..+|..+...|++++|+.+|.+|+...|.=..
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 47899999999999999999999998876433
No 357
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=78.02 E-value=6.9 Score=26.13 Aligned_cols=29 Identities=28% Similarity=0.559 Sum_probs=26.5
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 86 YLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 86 ~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
..+|+.+...|+++.|+.+|-+|+..+|.
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 45799999999999999999999999887
No 358
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.38 E-value=13 Score=25.71 Aligned_cols=43 Identities=23% Similarity=0.324 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhcc
Q 023501 63 DWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGR 113 (281)
Q Consensus 63 ~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p 113 (281)
.+++|..+..+||++|.. |.--..+.-|.+++..+++++.+..
T Consensus 18 ~h~~AF~~Is~AL~~DE~--------g~k~~Al~lYk~GI~eLe~Gl~I~~ 60 (116)
T 2dl1_A 18 AYKKAFLFVNKGLNTDEL--------GQKEEAKNYYKQGIGHLLRGISISS 60 (116)
T ss_dssp HHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHhhhhhc--------CCHHHHHHHHHHHHHHHHHhccccc
Confidence 478899999999999862 3333444456777888888888854
No 359
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=77.24 E-value=4.8 Score=26.18 Aligned_cols=30 Identities=17% Similarity=0.181 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023501 13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAIT 42 (281)
Q Consensus 13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~ 42 (281)
.|..+...|...=..|+|++|+.+|..|++
T Consensus 12 ~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 12 KGIELVQKAIDLDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444445555555555566666655555544
No 360
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=77.22 E-value=5.7 Score=36.75 Aligned_cols=51 Identities=14% Similarity=0.065 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcCh
Q 023501 48 PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEY 98 (281)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~ 98 (281)
......+|...+..|+|.-|.+.++.++..+|++.++...++.+|.++|.-
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~ 499 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQ 499 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence 344555677777888888888888888888888888888888888888843
No 361
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=76.60 E-value=5 Score=26.68 Aligned_cols=30 Identities=23% Similarity=0.237 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023501 13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAIT 42 (281)
Q Consensus 13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~ 42 (281)
.|..+...|...=..|+|++|+.+|..|++
T Consensus 14 ~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 14 AAVAVLKRAVELDAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 444455555555566666666666555544
No 362
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=76.53 E-value=19 Score=26.12 Aligned_cols=62 Identities=6% Similarity=-0.153 Sum_probs=47.0
Q ss_pred HHHHH-HHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC
Q 023501 18 RLDGN-YYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDH 79 (281)
Q Consensus 18 ~~~g~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p 79 (281)
.++|. .+-.+|+-++--+.+...+...+-++.++..+|.+|.++|+..+|.+.+.+|.+..-
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 34443 344667777777777776666777799999999999999999999999999988753
No 363
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=76.32 E-value=0.63 Score=24.70 Aligned_cols=15 Identities=7% Similarity=0.131 Sum_probs=10.9
Q ss_pred cccccCCcccccCce
Q 023501 207 YLCCKITLDIFRDPV 221 (281)
Q Consensus 207 ~~~c~i~~~~~~~pv 221 (281)
.|+||+|...+..|-
T Consensus 5 GFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 5 GFICPQCMKSLGSAD 19 (34)
T ss_dssp EEECTTTCCEESSHH
T ss_pred ccCCcHHHHHcCCHH
Confidence 478888887777653
No 364
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=76.20 E-value=1.5 Score=28.02 Aligned_cols=18 Identities=17% Similarity=0.078 Sum_probs=14.1
Q ss_pred CCCCCCCCcCCCCCcccH
Q 023501 244 FDPITREPLRESQLVPNL 261 (281)
Q Consensus 244 ~cP~~~~~~~~~~~~~n~ 261 (281)
.||.|++.|-...|..+-
T Consensus 53 kCP~CgEEFyG~~Lp~~E 70 (95)
T 2k5c_A 53 KCPVCGEEFYGKTLPRRE 70 (95)
T ss_dssp ECTTTCCEEETTSSCTTT
T ss_pred cCCCccHHHhcccCChHH
Confidence 599999998877666653
No 365
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=75.22 E-value=15 Score=24.12 Aligned_cols=36 Identities=31% Similarity=0.521 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 023501 11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN 46 (281)
Q Consensus 11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 46 (281)
.+.++.+...|..+|+.++|.+|..+|+++.....+
T Consensus 50 e~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ten 85 (106)
T 2vkj_A 50 EKKARSLIAEGKDLFETANYGEALVFFEKALNLSDN 85 (106)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred hhHHHHHHHHHHHHHHhcchhHHHHHHHHHHccccC
Confidence 467788888889999999999999999888755433
No 366
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=74.96 E-value=35 Score=33.66 Aligned_cols=91 Identities=19% Similarity=0.068 Sum_probs=68.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh-h--c-----------------
Q 023501 19 LDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQ-L--D----------------- 78 (281)
Q Consensus 19 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-l--~----------------- 78 (281)
.+...++..+.++-|..+ +...|.++...+-+|.+++..|++++|...+.+|-. + +
T Consensus 817 ~l~~~l~~~~~~~~~~~l----~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQL----IGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHH----HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHHH----hhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 345567777777766553 345677777788899999999999999999988732 1 1
Q ss_pred ---CcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhcc
Q 023501 79 ---HDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGR 113 (281)
Q Consensus 79 ---p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p 113 (281)
...+..|+....++.+.|.++.+++....|++..+
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~ 930 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKE 930 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCC
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 01234567778888899999999999999998743
No 367
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=74.82 E-value=5.1 Score=35.19 Aligned_cols=87 Identities=7% Similarity=-0.007 Sum_probs=61.7
Q ss_pred CHHHHHHHHHHHHHhCCC-------ch---------HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC----------cch
Q 023501 29 RYGAAIDAYTEAITLCPN-------VP---------IYWTNRALCHLKRNDWTKVEADCRKAIQLDH----------DSV 82 (281)
Q Consensus 29 ~~~~A~~~~~~al~~~p~-------~~---------~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p----------~~~ 82 (281)
..++|.....++...--+ .. .+-.++-.+|+++|+...|...++..-...+ +..
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v 220 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQI 220 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceE
Confidence 456777777777766211 11 1334456789999998887666543322111 235
Q ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHHhh-ccCC
Q 023501 83 KGHYLLGQTLLQRNEYADGIKELEKALNL-GRGA 115 (281)
Q Consensus 83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~-~p~~ 115 (281)
..+|.+|..++..++|.+|.+.+..|+.. +|..
T Consensus 221 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 221 EYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred eeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 78899999999999999999999999999 8864
No 368
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=74.78 E-value=13 Score=23.80 Aligned_cols=27 Identities=11% Similarity=0.151 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501 85 HYLLGQTLLQRNEYADGIKELEKALNL 111 (281)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~kal~~ 111 (281)
...+|.=+..+|+|+.|+.+|+.+++.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 456778888899999999999888766
No 369
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=74.77 E-value=5.1 Score=27.97 Aligned_cols=16 Identities=13% Similarity=0.212 Sum_probs=7.7
Q ss_pred hcCHHHHHHHHHHHHh
Q 023501 61 RNDWTKVEADCRKAIQ 76 (281)
Q Consensus 61 ~~~~~~A~~~~~~al~ 76 (281)
.|+|++|+..|..|++
T Consensus 31 ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 31 AGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 3445554444444444
No 370
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=74.46 E-value=2 Score=30.22 Aligned_cols=48 Identities=6% Similarity=0.031 Sum_probs=37.4
Q ss_pred CCcccccCCcccccC-ceecCCCcccccchHHhHhccCCCCCCCCCCCcCCC
Q 023501 205 PDYLCCKITLDIFRD-PVITPSGVTYERAVILDHLDKVGKFDPITREPLRES 255 (281)
Q Consensus 205 p~~~~c~i~~~~~~~-pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~ 255 (281)
|.-|.|..|...+.. +....+|..||+.|..+-+ .+ .|+.|++++...
T Consensus 28 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~--~~-~C~~C~~~I~~~ 76 (126)
T 2xqn_T 28 LKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH--AV-VCQGCHNAIDPE 76 (126)
T ss_dssp GGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS--CC-BCTTTCSBCCTT
T ss_pred CCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc--Cc-cCcccCCcCCcC
Confidence 456899999988876 5567899999999986654 23 599999998853
No 371
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=74.36 E-value=1.9 Score=30.57 Aligned_cols=49 Identities=16% Similarity=0.165 Sum_probs=38.1
Q ss_pred CCcccccCCccccc---CceecCCCcccccchHHhHhccCCCCCCCCCCCcCC
Q 023501 205 PDYLCCKITLDIFR---DPVITPSGVTYERAVILDHLDKVGKFDPITREPLRE 254 (281)
Q Consensus 205 p~~~~c~i~~~~~~---~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~ 254 (281)
|.-|.|..|...+. .+....+|..||+.|..+-+.... .|+.|++++..
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~-~C~~C~~~I~~ 78 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDG-LCASCDKRIRA 78 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCE-ECTTTCCEECT
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCcc-ChhhcCCccCc
Confidence 46689999998885 366778999999999888764322 49999988864
No 372
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=74.02 E-value=13 Score=28.67 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 023501 10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVP 48 (281)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 48 (281)
....+...+.+|..++..++|.+|...+..|+...|...
T Consensus 10 ~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 10 TAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 456678889999999999999999999999999988754
No 373
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=73.26 E-value=6.7 Score=25.09 Aligned_cols=35 Identities=17% Similarity=0.324 Sum_probs=27.1
Q ss_pred CcccccCCcccccCc--ee--cCCCcccccchHHhHhcc
Q 023501 206 DYLCCKITLDIFRDP--VI--TPSGVTYERAVILDHLDK 240 (281)
Q Consensus 206 ~~~~c~i~~~~~~~p--v~--~~~g~~~~~~~i~~~~~~ 240 (281)
..+.|.+|.+-+.|- |. +-.+|.||=-|-...++.
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 568899999999883 22 226799999998888765
No 374
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=71.52 E-value=0.94 Score=29.32 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=24.1
Q ss_pred ccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcC
Q 023501 208 LCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLR 253 (281)
Q Consensus 208 ~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~ 253 (281)
..||.|...|. ...+..+|..|=..+-. .. .||-|++++.
T Consensus 3 ~~CP~C~~~l~----~~~~~~~C~~C~~~~~~-~a-fCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALE----RNGDTAHCETCAKDFSL-QA-LCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCE----ECSSEEECTTTCCEEEE-EE-ECSSSCSCCC
T ss_pred CCCCCCCCccc----cCCCceECccccccCCC-cc-cCcchhhHHH
Confidence 56888885443 23345557777554333 23 4888888774
No 375
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=69.23 E-value=14 Score=35.73 Aligned_cols=68 Identities=9% Similarity=0.077 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CC----------------------chHHHHHHHHHHHHhcCHHHHHHHH
Q 023501 15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLC-PN----------------------VPIYWTNRALCHLKRNDWTKVEADC 71 (281)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~----------------------~~~~~~~~a~~~~~~~~~~~A~~~~ 71 (281)
..-+.+|..++..|++++|..+|.+|-..- .. ...+|...+..+.+.+-++-+++.+
T Consensus 841 ~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA 920 (950)
T 4gq2_M 841 IAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFS 920 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 344789999999999999999999875221 10 2347888899999999999999999
Q ss_pred HHHHhhc-Ccch
Q 023501 72 RKAIQLD-HDSV 82 (281)
Q Consensus 72 ~~al~l~-p~~~ 82 (281)
+.||..- +++.
T Consensus 921 ~lAI~~~~~dd~ 932 (950)
T 4gq2_M 921 LLADASKETDDE 932 (950)
T ss_dssp HHHHHTCCSCCH
T ss_pred HHHHhhcccCCc
Confidence 9999754 4433
No 376
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=68.50 E-value=5.3 Score=29.72 Aligned_cols=47 Identities=6% Similarity=0.016 Sum_probs=34.5
Q ss_pred CCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCC
Q 023501 205 PDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRE 254 (281)
Q Consensus 205 p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~ 254 (281)
+.-|.|..|...+.+--...+|..||+.|..+-+ .. .|..|++++..
T Consensus 31 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f--~~-~C~~C~~~I~~ 77 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF--GT-KCAACQLGIPP 77 (169)
T ss_dssp TTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHH--SC-BCTTTCCBCCT
T ss_pred cccCccCCCCCcCCCCCcccCCeeeecccccccc--cc-cccccccccCC
Confidence 4668999999888764456799999999987654 23 37777776654
No 377
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=67.95 E-value=15 Score=28.24 Aligned_cols=37 Identities=16% Similarity=0.043 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhH
Q 023501 48 PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKG 84 (281)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a 84 (281)
..+++.+|..++-.++|.+|...+..|++.-|.....
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~ 50 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQK 50 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHH
Confidence 4567778999999999999999999999988765433
No 378
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=67.44 E-value=23 Score=23.05 Aligned_cols=19 Identities=11% Similarity=0.315 Sum_probs=12.0
Q ss_pred HHhcChHHHHHHHHHHHhh
Q 023501 93 LQRNEYADGIKELEKALNL 111 (281)
Q Consensus 93 ~~~g~~~~A~~~~~kal~~ 111 (281)
-..|+|++|+..|..+++.
T Consensus 27 D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 27 DSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 4456666666666666654
No 379
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=67.22 E-value=12 Score=34.55 Aligned_cols=48 Identities=10% Similarity=0.107 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHH
Q 023501 83 KGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELA 130 (281)
Q Consensus 83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~ 130 (281)
......|...+..|+|..|.+....++..+|++.....+.......++
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 344445555556666666666666666666654444334444444433
No 380
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=67.14 E-value=4.9 Score=30.35 Aligned_cols=48 Identities=6% Similarity=0.026 Sum_probs=34.0
Q ss_pred CCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCC
Q 023501 205 PDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRES 255 (281)
Q Consensus 205 p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~ 255 (281)
|.-|.|..|...+..--...+|..||+.|..+-+ .+ .|..|++++...
T Consensus 85 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f--~~-kC~~C~~~I~~~ 132 (182)
T 2jtn_A 85 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF--GT-KCAACQLGIPPT 132 (182)
T ss_dssp SSTTSCTTTCCCCSSCCEEETTEEECHHHHHHTT--SC-CCTTTCCCCCSS
T ss_pred cccCccCCCCCccCCCceeECCEeeecCcccccc--cc-ccccCCCccCCC
Confidence 3458888888777654345689999988876543 23 488888887654
No 381
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=66.46 E-value=1.6 Score=29.23 Aligned_cols=13 Identities=8% Similarity=0.217 Sum_probs=11.3
Q ss_pred ccccchHHhHhcc
Q 023501 228 TYERAVILDHLDK 240 (281)
Q Consensus 228 ~~~~~~i~~~~~~ 240 (281)
-|||.||..|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999875
No 382
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=66.31 E-value=1.6 Score=29.15 Aligned_cols=13 Identities=15% Similarity=0.258 Sum_probs=11.3
Q ss_pred ccccchHHhHhcc
Q 023501 228 TYERAVILDHLDK 240 (281)
Q Consensus 228 ~~~~~~i~~~~~~ 240 (281)
-|||.||..|+..
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999874
No 383
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=65.55 E-value=5.2 Score=25.69 Aligned_cols=27 Identities=15% Similarity=0.074 Sum_probs=20.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 023501 17 LRLDGNYYFSKDRYGAAIDAYTEAITL 43 (281)
Q Consensus 17 ~~~~g~~~~~~~~~~~A~~~~~~al~~ 43 (281)
...+|..+...|+|+.|+.+|+.++..
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 445677778888888888888888764
No 384
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=65.28 E-value=10 Score=25.31 Aligned_cols=29 Identities=24% Similarity=0.439 Sum_probs=24.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 023501 18 RLDGNYYFSKDRYGAAIDAYTEAITLCPN 46 (281)
Q Consensus 18 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 46 (281)
..+|..++..|+++.|+.+|.+|+...|.
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 46799999999999999999888887665
No 385
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=64.94 E-value=1.6 Score=33.33 Aligned_cols=49 Identities=16% Similarity=0.178 Sum_probs=38.0
Q ss_pred CCcccccCCcccccC---ceecCCCcccccchHHhHhccCCCCCCCCCCCcCC
Q 023501 205 PDYLCCKITLDIFRD---PVITPSGVTYERAVILDHLDKVGKFDPITREPLRE 254 (281)
Q Consensus 205 p~~~~c~i~~~~~~~---pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~ 254 (281)
+.-|.|..|...+.+ +....+|..||+.|..+-+.... .|+.|++++..
T Consensus 30 ~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~-~C~~C~~~I~~ 81 (188)
T 1rut_X 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSG-ACSACGQSIPA 81 (188)
T ss_dssp GGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCE-ECTTTCCEECT
T ss_pred ccCcccCCCCcccccCCceEEEeCCccccccccccccccCC-ccccCCCcccc
Confidence 456899999988874 66788999999999887664222 39999988864
No 386
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.86 E-value=76 Score=27.50 Aligned_cols=63 Identities=5% Similarity=-0.121 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHh----hcCc--chhHHHHHHHHHHHhcChHHHHHHHHHHHh
Q 023501 48 PIYWTNRALCHLKRNDWTKVEADCRKAIQ----LDHD--SVKGHYLLGQTLLQRNEYADGIKELEKALN 110 (281)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~----l~p~--~~~a~~~la~~~~~~g~~~~A~~~~~kal~ 110 (281)
+.+...+|..|...|+|.+|...+..... .++. -.+.+.....++...+++..|...+.++..
T Consensus 137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~ 205 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILK 205 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34567789999999999999998888642 2222 256778889999999999999999998753
No 387
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=60.92 E-value=59 Score=25.59 Aligned_cols=16 Identities=13% Similarity=0.077 Sum_probs=10.9
Q ss_pred hcChHHHHHHHHHHHh
Q 023501 95 RNEYADGIKELEKALN 110 (281)
Q Consensus 95 ~g~~~~A~~~~~kal~ 110 (281)
+++.++|.....+++.
T Consensus 186 l~~~~~A~~lAk~afd 201 (234)
T 2br9_A 186 LNSPDRACRLAKAAFD 201 (234)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6777777776666664
No 388
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=60.59 E-value=33 Score=22.64 Aligned_cols=30 Identities=20% Similarity=0.224 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501 82 VKGHYLLGQTLLQRNEYADGIKELEKALNL 111 (281)
Q Consensus 82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~ 111 (281)
+..+-++++.+...|+|++||+...++...
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa~y 44 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATTY 44 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 456667788888888888888777776644
No 389
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=60.28 E-value=3.3 Score=28.16 Aligned_cols=29 Identities=7% Similarity=0.240 Sum_probs=16.9
Q ss_pred ccCceecCCCcccccchHHhHhccCCCCCCCCCCC
Q 023501 217 FRDPVITPSGVTYERAVILDHLDKVGKFDPITREP 251 (281)
Q Consensus 217 ~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~ 251 (281)
+..|....||.+|+ .-+. .+..||.|+..
T Consensus 65 v~p~~C~~CG~~F~-----~~~~-kPsrCP~CkSe 93 (105)
T 2gmg_A 65 IKPAQCRKCGFVFK-----AEIN-IPSRCPKCKSE 93 (105)
T ss_dssp ECCCBBTTTCCBCC-----CCSS-CCSSCSSSCCC
T ss_pred EECcChhhCcCeec-----ccCC-CCCCCcCCCCC
Confidence 34455667888881 1122 22359999864
No 390
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=59.24 E-value=3 Score=20.96 Aligned_cols=15 Identities=20% Similarity=0.275 Sum_probs=8.3
Q ss_pred CcccccCCcccccCc
Q 023501 206 DYLCCKITLDIFRDP 220 (281)
Q Consensus 206 ~~~~c~i~~~~~~~p 220 (281)
..+.||+|...|-||
T Consensus 2 ~k~~CpvCk~q~Pd~ 16 (28)
T 2jvx_A 2 SDFCCPKCQYQAPDM 16 (28)
T ss_dssp CCEECTTSSCEESSH
T ss_pred CcccCccccccCcCh
Confidence 345666666555543
No 391
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=58.96 E-value=5.8 Score=26.46 Aligned_cols=48 Identities=4% Similarity=-0.052 Sum_probs=35.4
Q ss_pred CCcccccCCcccccCc-eecCCCcccccchHHhHhccCCCCCCCCCCCcCCC
Q 023501 205 PDYLCCKITLDIFRDP-VITPSGVTYERAVILDHLDKVGKFDPITREPLRES 255 (281)
Q Consensus 205 p~~~~c~i~~~~~~~p-v~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~ 255 (281)
+.-|.|..|...+.+. ....+|..||+.|..+-+ ...|..|++++...
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~~~ 79 (101)
T 2cup_A 31 DTCFRCAKCLHPLANETFVAKDNKILCNKCTTRED---SPKCKGCFKAIVAG 79 (101)
T ss_dssp TTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCC---CCBCSSSCCBCCSS
T ss_pred hcCCcccccCCCCCcCeeECcCCEEEChhHhhhhc---CCccccCCCccccC
Confidence 3458899999888654 456799999999875433 33599999998743
No 392
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=58.54 E-value=66 Score=25.77 Aligned_cols=16 Identities=25% Similarity=0.225 Sum_probs=11.0
Q ss_pred hcChHHHHHHHHHHHh
Q 023501 95 RNEYADGIKELEKALN 110 (281)
Q Consensus 95 ~g~~~~A~~~~~kal~ 110 (281)
+++.++|.....+++.
T Consensus 211 ln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 211 LNEPRAAIDMAKEAFE 226 (260)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6777777776666664
No 393
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=58.37 E-value=4 Score=24.52 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=25.2
Q ss_pred cccccCCcccccCceecCCCcccccchHHhHhcc----CCCCCCCCCCCcCC
Q 023501 207 YLCCKITLDIFRDPVITPSGVTYERAVILDHLDK----VGKFDPITREPLRE 254 (281)
Q Consensus 207 ~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~----~~~~cP~~~~~~~~ 254 (281)
.|.|++|+..|..+ +.|..+... .+..|+.|+..|..
T Consensus 4 py~C~~C~k~F~~~-----------~~L~~H~~~Ht~ekp~~C~~C~k~F~~ 44 (60)
T 4gzn_C 4 PFFCNFCGKTYRDA-----------SGLSRHRRAHLGYRPRSCPECGKCFRD 44 (60)
T ss_dssp CEECTTTCCEESSH-----------HHHHHHHHHHHTCCCEECTTTCCEESS
T ss_pred CccCCCCCCEeCCH-----------HHHHHHHHHhCCCcCeECCCCCCCcCC
Confidence 46788887777763 556666542 23359999998875
No 394
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=57.76 E-value=72 Score=25.55 Aligned_cols=16 Identities=13% Similarity=0.077 Sum_probs=10.6
Q ss_pred hcChHHHHHHHHHHHh
Q 023501 95 RNEYADGIKELEKALN 110 (281)
Q Consensus 95 ~g~~~~A~~~~~kal~ 110 (281)
+++.++|.....+|+.
T Consensus 212 ln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 212 LNSPDRACRLAKAAFD 227 (261)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5777777766666654
No 395
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=57.46 E-value=62 Score=24.75 Aligned_cols=14 Identities=21% Similarity=0.365 Sum_probs=9.2
Q ss_pred CCcccccCCccccc
Q 023501 205 PDYLCCKITLDIFR 218 (281)
Q Consensus 205 p~~~~c~i~~~~~~ 218 (281)
...+.|++|+-+..
T Consensus 169 ~~~~~C~~CG~i~~ 182 (202)
T 1yuz_A 169 DKFHLCPICGYIHK 182 (202)
T ss_dssp CCEEECSSSCCEEE
T ss_pred CcEEEECCCCCEEc
Confidence 35678888776543
No 396
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=56.96 E-value=13 Score=23.14 Aligned_cols=46 Identities=9% Similarity=-0.081 Sum_probs=33.7
Q ss_pred CCcccccCCcccccC-ceecCCCccccc-chHHhHhccCCCCCCCCCCCcC
Q 023501 205 PDYLCCKITLDIFRD-PVITPSGVTYER-AVILDHLDKVGKFDPITREPLR 253 (281)
Q Consensus 205 p~~~~c~i~~~~~~~-pv~~~~g~~~~~-~~i~~~~~~~~~~cP~~~~~~~ 253 (281)
+.-|.|..|...+.. +....+|..||+ .|..+-+ .+ .|-.|+..+.
T Consensus 25 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f--~~-~C~~C~~~~~ 72 (76)
T 1iml_A 25 RPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMF--GP-KGFGRGGAES 72 (76)
T ss_dssp TTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHS--SC-CCSSCCCSSS
T ss_pred CCCCCccccCccCCCCceECcCCeEeeCHHHHHHHh--Cc-cCCCcCCcee
Confidence 456899999988876 556779999999 6986654 23 4777875543
No 397
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=56.84 E-value=39 Score=22.34 Aligned_cols=23 Identities=9% Similarity=-0.015 Sum_probs=11.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 023501 20 DGNYYFSKDRYGAAIDAYTEAIT 42 (281)
Q Consensus 20 ~g~~~~~~~~~~~A~~~~~~al~ 42 (281)
.|..+|..|+|=+|-+.++..-.
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~ 29 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWL 29 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHh
Confidence 34445555555555555544433
No 398
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=55.74 E-value=4.6 Score=22.93 Aligned_cols=27 Identities=11% Similarity=-0.048 Sum_probs=18.2
Q ss_pred cCCCcccccchHHhHhccCCCCCCCCCCCc
Q 023501 223 TPSGVTYERAVILDHLDKVGKFDPITREPL 252 (281)
Q Consensus 223 ~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~ 252 (281)
..||++|..+-++.. .+..||.||-.+
T Consensus 7 ~rCg~~fs~~el~~l---P~IrCpyCGyri 33 (48)
T 4ayb_P 7 GKCWKTFTDEQLKVL---PGVRCPYCGYKI 33 (48)
T ss_dssp CCTTTTCCCCCSCCC---SSSCCTTTCCSC
T ss_pred eccCCCccHHHHhhC---CCcccCccCcEE
Confidence 468888887765543 233599998664
No 399
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=55.24 E-value=2.5 Score=33.95 Aligned_cols=62 Identities=21% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHH
Q 023501 64 WTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAK 133 (281)
Q Consensus 64 ~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~ 133 (281)
...|+..+.+|++.|.. |..-....-|.+|++.|..+++..|++.....+...+...+.+++
T Consensus 20 ~~~Ai~lv~~AVe~D~~--------g~y~eAl~lY~eaIe~Ll~alk~e~d~~~k~~lr~Ki~eYl~RAE 81 (257)
T 2ymb_A 20 STAAATVLKRAVELDSE--------SRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAE 81 (257)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666531 111122222445555555555554443333333344444444444
No 400
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=55.16 E-value=12 Score=21.24 Aligned_cols=38 Identities=8% Similarity=-0.053 Sum_probs=25.4
Q ss_pred CcccccCCcccccCceecCCCcccccchHHhHhc-c----CCCCCCCCCCCcCC
Q 023501 206 DYLCCKITLDIFRDPVITPSGVTYERAVILDHLD-K----VGKFDPITREPLRE 254 (281)
Q Consensus 206 ~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~-~----~~~~cP~~~~~~~~ 254 (281)
..+.|++|...|.. +..|..++. . .+..|+.|+..|+.
T Consensus 11 k~~~C~~C~k~f~~-----------~~~L~~H~~~~H~~~k~~~C~~C~k~F~~ 53 (54)
T 2eps_A 11 KPYICQSCGKGFSR-----------PDHLNGHIKQVHTSERPHKCQVWVSGPSS 53 (54)
T ss_dssp CCEECSSSCCEESS-----------HHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred CCeECCCCCcccCC-----------HHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence 45788888877765 355666653 2 23369999988763
No 401
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=54.89 E-value=80 Score=25.26 Aligned_cols=17 Identities=12% Similarity=0.018 Sum_probs=10.7
Q ss_pred hcChHHHHHHHHHHHhh
Q 023501 95 RNEYADGIKELEKALNL 111 (281)
Q Consensus 95 ~g~~~~A~~~~~kal~~ 111 (281)
+++.++|.....+++.-
T Consensus 191 ln~~~~Ac~lAk~Afd~ 207 (260)
T 1o9d_A 191 LNSPDRACNLAKQAFDE 207 (260)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHH
Confidence 56677776666666544
No 402
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=54.64 E-value=79 Score=25.10 Aligned_cols=16 Identities=13% Similarity=0.148 Sum_probs=10.6
Q ss_pred hcChHHHHHHHHHHHh
Q 023501 95 RNEYADGIKELEKALN 110 (281)
Q Consensus 95 ~g~~~~A~~~~~kal~ 110 (281)
+++.++|.....+|+.
T Consensus 187 ln~~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 187 QNAPEQACHLAKTAFD 202 (248)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5777777766666654
No 403
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=54.60 E-value=3.4 Score=28.46 Aligned_cols=11 Identities=18% Similarity=0.277 Sum_probs=9.3
Q ss_pred CCCCCCCCcCC
Q 023501 244 FDPITREPLRE 254 (281)
Q Consensus 244 ~cP~~~~~~~~ 254 (281)
.||+||.+++.
T Consensus 49 ~CPvCgs~l~~ 59 (112)
T 1l8d_A 49 KCPVCGRELTD 59 (112)
T ss_dssp ECTTTCCEECH
T ss_pred CCCCCCCcCCH
Confidence 49999998875
No 404
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=54.55 E-value=7.8 Score=22.42 Aligned_cols=36 Identities=8% Similarity=0.152 Sum_probs=23.5
Q ss_pred ccccCCcccccCceecCCCcccccchHHhHhccC----CCCCCCCCCCcCC
Q 023501 208 LCCKITLDIFRDPVITPSGVTYERAVILDHLDKV----GKFDPITREPLRE 254 (281)
Q Consensus 208 ~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~----~~~cP~~~~~~~~ 254 (281)
+.|++|+..|..+ ..|..+.... +..||.|+..+..
T Consensus 3 ~~C~~C~~~f~~~-----------~~l~~H~~~h~~~~~~~C~~C~~~f~~ 42 (60)
T 2adr_A 3 FVCEVCTRAFARQ-----------EHLKRHYRSHTNEKPYPCGLCNRAFTR 42 (60)
T ss_dssp BCCTTTCCCBSCH-----------HHHHHHHHTTTSSCSEECTTTCCEESS
T ss_pred CcCCCCccccCCH-----------HHHHHHHHHhCCCCCccCCCCCCccCC
Confidence 6788887777663 4555555432 2359999987764
No 405
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=54.42 E-value=30 Score=31.65 Aligned_cols=54 Identities=7% Similarity=-0.104 Sum_probs=44.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 023501 23 YYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQ 76 (281)
Q Consensus 23 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 76 (281)
..++.|++..|..++...-......+...+.+|.++..+|+.++|...+.++..
T Consensus 294 ~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 294 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 456789999999999775443345677888999999999999999999999875
No 406
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=54.19 E-value=31 Score=30.43 Aligned_cols=48 Identities=15% Similarity=0.140 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhhcCc-----------chhHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501 64 WTKVEADCRKAIQLDHD-----------SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111 (281)
Q Consensus 64 ~~~A~~~~~~al~l~p~-----------~~~a~~~la~~~~~~g~~~~A~~~~~kal~~ 111 (281)
|+..+.+++.|+.+-|. -.-|+..+|.+|+.+|+|++|+....+++..
T Consensus 174 y~~I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 174 YAQSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 56677888888876543 2358889999999999999999999999865
No 407
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=54.09 E-value=2.9 Score=34.70 Aligned_cols=45 Identities=9% Similarity=-0.158 Sum_probs=31.1
Q ss_pred CcccccCCcccccCceec----CCC--cccccchHHhHhccCCCCCCCCCCC
Q 023501 206 DYLCCKITLDIFRDPVIT----PSG--VTYERAVILDHLDKVGKFDPITREP 251 (281)
Q Consensus 206 ~~~~c~i~~~~~~~pv~~----~~g--~~~~~~~i~~~~~~~~~~cP~~~~~ 251 (281)
..-.||+|+..-.--|+. ..| +-+|.-|=.+|--... .||.|+..
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~-~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRI-KCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTT-SCSSSCCC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCc-CCcCCCCC
Confidence 455799999655444554 366 4678899888865444 49999875
No 408
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=53.98 E-value=32 Score=30.02 Aligned_cols=48 Identities=21% Similarity=0.331 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhhcCc--------chhHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501 64 WTKVEADCRKAIQLDHD--------SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111 (281)
Q Consensus 64 ~~~A~~~~~~al~l~p~--------~~~a~~~la~~~~~~g~~~~A~~~~~kal~~ 111 (281)
|+..+.+++.|+.+-|. -.-|+..+|.+|+..|+|++|+....+++..
T Consensus 170 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 170 YTEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp HHHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 56777888888776553 2458889999999999999999999999864
No 409
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=53.05 E-value=6.2 Score=22.55 Aligned_cols=37 Identities=14% Similarity=0.014 Sum_probs=23.5
Q ss_pred cccccCCcccccCceecCCCcccccchHHhHhc----cCCCCCCCCCCCcCC
Q 023501 207 YLCCKITLDIFRDPVITPSGVTYERAVILDHLD----KVGKFDPITREPLRE 254 (281)
Q Consensus 207 ~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~----~~~~~cP~~~~~~~~ 254 (281)
.+.|++|+..|... ..|..+.. ..+..||.|+..+..
T Consensus 4 ~~~C~~C~~~f~~~-----------~~l~~H~~~h~~~~~~~C~~C~~~f~~ 44 (57)
T 3uk3_C 4 SRECSYCGKFFRSN-----------YYLNIHLRTHTGEKPYKCEFCEYAAAQ 44 (57)
T ss_dssp -CBCTTTCCBCSCH-----------HHHHHHHHHHHCCCCEECSSSSCEESS
T ss_pred CccCCCCcchhCCh-----------HHHHHHHHHcCCCCCcCCCCCcchhCC
Confidence 46788888777764 44555443 223359999987764
No 410
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=53.02 E-value=34 Score=29.75 Aligned_cols=48 Identities=10% Similarity=0.169 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhhcCc--------chhHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501 64 WTKVEADCRKAIQLDHD--------SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111 (281)
Q Consensus 64 ~~~A~~~~~~al~l~p~--------~~~a~~~la~~~~~~g~~~~A~~~~~kal~~ 111 (281)
|+..+.+++.|+.+-|. -.-++..+|.+|+..|+|++|++..++++..
T Consensus 164 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 56778888888876543 3458889999999999999999999999864
No 411
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=51.77 E-value=7.5 Score=22.16 Aligned_cols=36 Identities=8% Similarity=0.120 Sum_probs=23.0
Q ss_pred ccccCCcccccCceecCCCcccccchHHhHhcc----CCCCCCCCCCCcCC
Q 023501 208 LCCKITLDIFRDPVITPSGVTYERAVILDHLDK----VGKFDPITREPLRE 254 (281)
Q Consensus 208 ~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~----~~~~cP~~~~~~~~ 254 (281)
+.|++|+..|..+ ..|..+... .+..|+.|+..+..
T Consensus 2 ~~C~~C~~~f~~~-----------~~l~~H~~~h~~~~~~~C~~C~~~f~~ 41 (57)
T 1bbo_A 2 YICEECGIRXKKP-----------SMLKKHIRTHTDVRPYHCTYCNFSFKT 41 (57)
T ss_dssp CBCTTTCCBCSSH-----------HHHHHHHHHTSSCCCEECSSSSCEESS
T ss_pred CcCCCCcCcCCCH-----------HHHHHHHHhcCCCCCccCCCCCchhcC
Confidence 5688887777664 445555543 22359999987764
No 412
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=51.68 E-value=9.1 Score=24.80 Aligned_cols=38 Identities=11% Similarity=0.069 Sum_probs=26.4
Q ss_pred CcccccCCcccccCceecCCCcccccchHHhHhccC----CCCCCCCCCCcCC
Q 023501 206 DYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKV----GKFDPITREPLRE 254 (281)
Q Consensus 206 ~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~----~~~cP~~~~~~~~ 254 (281)
..+.|++|+..|.. +..|..++... +..|+.|+..|..
T Consensus 27 ~~h~C~~Cgk~F~~-----------~~~L~~H~~~H~~~k~~~C~~C~k~F~~ 68 (85)
T 2lv2_A 27 ECHLCPVCGESFAS-----------KGAQERHLRLLHAAQVFPCKYCPATFYS 68 (85)
T ss_dssp TTEECTTSCCEESS-----------HHHHHHHHHTTSCSSSEECTTSSCEESS
T ss_pred CCEECCCCCCCcCc-----------HHHHhhhhhhccCCCccCCCCCCCEeCC
Confidence 34678888877776 36677776532 2359999988875
No 413
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=49.43 E-value=5.8 Score=29.43 Aligned_cols=10 Identities=10% Similarity=0.112 Sum_probs=7.9
Q ss_pred CCCCCCCCcC
Q 023501 244 FDPITREPLR 253 (281)
Q Consensus 244 ~cP~~~~~~~ 253 (281)
.||.||.++.
T Consensus 150 ~Cp~CG~~~~ 159 (165)
T 2lcq_A 150 VCPDCGSKVK 159 (165)
T ss_dssp BCTTTCCBEE
T ss_pred cCCCCCCcce
Confidence 5999998753
No 414
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=48.86 E-value=63 Score=22.94 Aligned_cols=28 Identities=7% Similarity=-0.021 Sum_probs=16.7
Q ss_pred CcccccCCccccc--Cc---eecCCCcccccch
Q 023501 206 DYLCCKITLDIFR--DP---VITPSGVTYERAV 233 (281)
Q Consensus 206 ~~~~c~i~~~~~~--~p---v~~~~g~~~~~~~ 233 (281)
..-.|.+|...|- .. +-..|.+.+|+.|
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C 86 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKC 86 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTS
T ss_pred CCccccccCCCcccccCCCCCCCCCCccccccc
Confidence 4567899987762 11 2244666666666
No 415
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=54.30 E-value=3.7 Score=38.05 Aligned_cols=49 Identities=8% Similarity=0.058 Sum_probs=32.3
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHH
Q 023501 53 NRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADG 101 (281)
Q Consensus 53 ~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A 101 (281)
.+|...+..|+|.-|.+.++.++..+|++.++...++.+|.++|.-.+.
T Consensus 466 ~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~~ 514 (668)
T 2yhe_A 466 KQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTEN 514 (668)
Confidence 3455555667777777777777777777777777777777777654433
No 416
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=47.99 E-value=11 Score=22.01 Aligned_cols=16 Identities=19% Similarity=0.395 Sum_probs=12.0
Q ss_pred CCCCCCCcccccCCcc
Q 023501 200 TPAEVPDYLCCKITLD 215 (281)
Q Consensus 200 ~~~~~p~~~~c~i~~~ 215 (281)
...++|+++.||+|+.
T Consensus 29 ~f~~lP~dw~CP~Cg~ 44 (52)
T 1e8j_A 29 KFEDLPDDWACPVCGA 44 (52)
T ss_dssp CTTSSCTTCCCSSSCC
T ss_pred chHHCCCCCcCCCCCC
Confidence 3456788889999874
No 417
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=47.98 E-value=27 Score=18.86 Aligned_cols=35 Identities=20% Similarity=0.142 Sum_probs=22.5
Q ss_pred CCcccccCCcccccCceecCCCcccccchHHhHhccC----CCCCCCCCC
Q 023501 205 PDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKV----GKFDPITRE 250 (281)
Q Consensus 205 p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~----~~~cP~~~~ 250 (281)
...|.|++|+..|... ..|..+.... +..|++|++
T Consensus 10 ~k~~~C~~C~k~f~~~-----------~~L~~H~~~H~~~k~~~C~~C~k 48 (48)
T 2epr_A 10 RKQVACEICGKIFRDV-----------YHLNRHKLSHSGEKPYSSGPSSG 48 (48)
T ss_dssp CCSEEETTTTEEESSH-----------HHHHHHGGGSCSCCCCCSCCCCC
T ss_pred CcCeeCCCCCcccCCH-----------HHHHHHHHhcCCCCCccCCCCCC
Confidence 3457888888777763 4566665432 335998863
No 418
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=47.58 E-value=42 Score=29.35 Aligned_cols=49 Identities=16% Similarity=0.214 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhhcCc--------chhHHHHHHHHHHHhcChHHHHHHHHHHHhhc
Q 023501 64 WTKVEADCRKAIQLDHD--------SVKGHYLLGQTLLQRNEYADGIKELEKALNLG 112 (281)
Q Consensus 64 ~~~A~~~~~~al~l~p~--------~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~ 112 (281)
|+..+.+++.|+.+-|. -.-|+..+|.+|+..|+|++|++...+++...
T Consensus 176 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~~ 232 (477)
T 3mcx_A 176 YEQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKNN 232 (477)
T ss_dssp HHHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCC
Confidence 67788888888876553 34588899999999999999999999999753
No 419
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.40 E-value=10 Score=23.62 Aligned_cols=35 Identities=11% Similarity=0.161 Sum_probs=24.5
Q ss_pred CCcccccCCccccc--CceecCCCcccccchHHhHhc
Q 023501 205 PDYLCCKITLDIFR--DPVITPSGVTYERAVILDHLD 239 (281)
Q Consensus 205 p~~~~c~i~~~~~~--~pv~~~~g~~~~~~~i~~~~~ 239 (281)
|.-|.|..|...+. +.....+|..||+.|-.....
T Consensus 29 ~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~ 65 (73)
T 1wig_A 29 PSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAART 65 (73)
T ss_dssp TTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSS
T ss_pred CCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhc
Confidence 45688888887776 344556788888888766543
No 420
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=46.47 E-value=56 Score=28.37 Aligned_cols=47 Identities=21% Similarity=0.044 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhCCC--------chHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 023501 31 GAAIDAYTEAITLCPN--------VPIYWTNRALCHLKRNDWTKVEADCRKAIQL 77 (281)
Q Consensus 31 ~~A~~~~~~al~~~p~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 77 (281)
+..+.-++.|+..-|. -..++..+|.+|+-+|+|++|...++++|..
T Consensus 165 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 165 DFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 3455566677666553 3468888999999999999999999999863
No 421
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=46.38 E-value=12 Score=25.78 Aligned_cols=37 Identities=16% Similarity=0.355 Sum_probs=25.7
Q ss_pred cccccCCcccccCceecCCCcccccchHHhHhcc--CCCCCCCCCCCcCC
Q 023501 207 YLCCKITLDIFRDPVITPSGVTYERAVILDHLDK--VGKFDPITREPLRE 254 (281)
Q Consensus 207 ~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~--~~~~cP~~~~~~~~ 254 (281)
.+.|++|+..|... ..|..+... .+..|+.|+..|..
T Consensus 74 ~~~C~~C~k~f~~~-----------~~l~~H~~~H~~~~~C~~C~k~f~~ 112 (129)
T 2wbt_A 74 QFVCPLCLMPFSSS-----------VSLKQHIRYTEHTKVCPVCKKEFTS 112 (129)
T ss_dssp SEECTTTCCEESSH-----------HHHHHHHHHTCCCCBCTTTCCBCSS
T ss_pred CeECCCCCcccCCH-----------hHHHHHHHHCCCCCCCCCCCcccCC
Confidence 47899888777663 456666542 34469999988875
No 422
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=45.87 E-value=71 Score=22.02 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501 64 WTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111 (281)
Q Consensus 64 ~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~ 111 (281)
.+.|+..+.+|++. -..|+|++|+.+|..++++
T Consensus 15 l~kAi~lv~~Ave~---------------D~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 15 LQKAIDLASKAAQE---------------DKAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHHHHHHHHHHHH---------------HHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------------HHccCHHHHHHHHHHHHHH
Confidence 45666666666544 3446777777777776655
No 423
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=45.82 E-value=14 Score=19.68 Aligned_cols=32 Identities=22% Similarity=0.329 Sum_probs=18.8
Q ss_pred cccccCCcccccCceecCCCcccccchHHhHhcc----CCCCCCCCC
Q 023501 207 YLCCKITLDIFRDPVITPSGVTYERAVILDHLDK----VGKFDPITR 249 (281)
Q Consensus 207 ~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~----~~~~cP~~~ 249 (281)
.+.|++|+..|.. +..|..+... ....||.|+
T Consensus 10 ~~~C~~C~k~f~~-----------~~~l~~H~~~H~~~~~~~C~~cg 45 (45)
T 2epq_A 10 PYSCPVCGLRFKR-----------KDRMSYHVRSHDGSVGKSGPSSG 45 (45)
T ss_dssp SSEETTTTEECSC-----------HHHHHHHHHHHSCCCCCCCCCCC
T ss_pred CCcCCCCCcccCC-----------HHHHHHHHHHccCCCCCCCcCCC
Confidence 4677777766655 3445555432 233588885
No 424
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=44.89 E-value=76 Score=27.74 Aligned_cols=63 Identities=11% Similarity=-0.043 Sum_probs=48.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCC--C--------chHHHHHHHHHHHHhcCHHHHHHHHHHHHhh-cCcc
Q 023501 19 LDGNYYFSKDRYGAAIDAYTEAITLCP--N--------VPIYWTNRALCHLKRNDWTKVEADCRKAIQL-DHDS 81 (281)
Q Consensus 19 ~~g~~~~~~~~~~~A~~~~~~al~~~p--~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-~p~~ 81 (281)
.+-..||+.++..-+...+...-...+ . ...+++.+|..++-.++|.+|...+..|++. -|..
T Consensus 181 ~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 181 KLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 445778999999888888754322221 1 2478888999999999999999999999998 7754
No 425
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=44.63 E-value=91 Score=22.91 Aligned_cols=59 Identities=3% Similarity=-0.052 Sum_probs=44.8
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhhcCcc------hhHHHH-HHHHHHH--hcChHHHHHHHHHHHhh
Q 023501 53 NRALCHLKRNDWTKVEADCRKAIQLDHDS------VKGHYL-LGQTLLQ--RNEYADGIKELEKALNL 111 (281)
Q Consensus 53 ~~a~~~~~~~~~~~A~~~~~~al~l~p~~------~~a~~~-la~~~~~--~g~~~~A~~~~~kal~~ 111 (281)
..+..++..|+|=+|=+.++.+-+..+.. ..++.. +|.++.+ .|+...|...+.+++..
T Consensus 37 ~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 37 VHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34566778899999999999998776543 456666 5555544 68999999999999874
No 426
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=44.27 E-value=63 Score=28.12 Aligned_cols=47 Identities=13% Similarity=0.028 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhCCC--------chHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 023501 31 GAAIDAYTEAITLCPN--------VPIYWTNRALCHLKRNDWTKVEADCRKAIQL 77 (281)
Q Consensus 31 ~~A~~~~~~al~~~p~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 77 (281)
+..+.-++.|+..-|. -..++..+|.+|+-+|+|++|...++++|..
T Consensus 171 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 171 TEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp HHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 3455556667665543 3568888999999999999999999999864
No 427
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=44.05 E-value=14 Score=28.08 Aligned_cols=35 Identities=9% Similarity=0.142 Sum_probs=28.1
Q ss_pred CCcccccCCcccccCc-eecCCCcccccchHHhHhc
Q 023501 205 PDYLCCKITLDIFRDP-VITPSGVTYERAVILDHLD 239 (281)
Q Consensus 205 p~~~~c~i~~~~~~~p-v~~~~g~~~~~~~i~~~~~ 239 (281)
|.-|.|..|...+.+- ....+|..||+.|..+-+.
T Consensus 32 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~ 67 (192)
T 1b8t_A 32 KSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYG 67 (192)
T ss_dssp TTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHS
T ss_pred CCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcC
Confidence 4678999999888764 4567999999999988764
No 428
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=43.92 E-value=62 Score=28.52 Aligned_cols=30 Identities=13% Similarity=0.158 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 023501 48 PIYWTNRALCHLKRNDWTKVEADCRKAIQL 77 (281)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 77 (281)
..++..+|.+|+-+++|++|...++++|..
T Consensus 203 ~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 203 EVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 468888999999999999999999999864
No 429
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=43.56 E-value=12 Score=24.06 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=11.3
Q ss_pred CCCCCCcccccCCcc
Q 023501 201 PAEVPDYLCCKITLD 215 (281)
Q Consensus 201 ~~~~p~~~~c~i~~~ 215 (281)
..++|+++.||+|+.
T Consensus 54 fedlPddW~CPvCga 68 (81)
T 2kn9_A 54 WDDIPDDWSCPDCGA 68 (81)
T ss_dssp TTTSCTTCCCTTTCC
T ss_pred hhHCCCCCcCCCCCC
Confidence 456788888888874
No 430
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=43.55 E-value=16 Score=22.16 Aligned_cols=38 Identities=13% Similarity=0.030 Sum_probs=25.6
Q ss_pred CcccccCCcccccCceecCCCcccccchHHhHhcc----CCCCCCCCCCCcCC
Q 023501 206 DYLCCKITLDIFRDPVITPSGVTYERAVILDHLDK----VGKFDPITREPLRE 254 (281)
Q Consensus 206 ~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~----~~~~cP~~~~~~~~ 254 (281)
..+.|++|+..|... ..|..+... ....|+.|+..|..
T Consensus 16 ~~~~C~~C~k~f~~~-----------~~l~~H~~~H~~~~~~~C~~C~k~f~~ 57 (74)
T 2lce_A 16 KPYKCDRCQASFRYK-----------GNLASHKTVHTGEKPYRCNICGAQFNR 57 (74)
T ss_dssp CSBCCTTSSCCBSCH-----------HHHHHHHHHHCCCCSEECTTTCCEESC
T ss_pred CCeECCCCCceeCCH-----------HHHHHHHHHcCCCCCEECCCCCchhCC
Confidence 458899988877763 445555432 22359999988765
No 431
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=43.49 E-value=1.4e+02 Score=24.73 Aligned_cols=100 Identities=10% Similarity=0.041 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc--------hHH--HHHHHHHHHHhcCHHHHH-----HHHHHHHh---
Q 023501 15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV--------PIY--WTNRALCHLKRNDWTKVE-----ADCRKAIQ--- 76 (281)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--------~~~--~~~~a~~~~~~~~~~~A~-----~~~~~al~--- 76 (281)
..-...|..++..|+|++|+..|...|..-|-. ..+ +...+.=|.-.=..+.+. ++..+.++
T Consensus 115 ~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAA 194 (325)
T 3mv2_A 115 NEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAA 194 (325)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 334568999999999999999999998764321 111 111111110000001110 11122222
Q ss_pred ------hcCcc-hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501 77 ------LDHDS-VKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114 (281)
Q Consensus 77 ------l~p~~-~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 114 (281)
+.|.+ .-++...-...++.++|..|....++.+++.|.
T Consensus 195 YFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 195 YFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp HGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 23332 234444455567789999999999999999764
No 432
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=43.08 E-value=9.9 Score=23.09 Aligned_cols=38 Identities=8% Similarity=0.028 Sum_probs=25.0
Q ss_pred CcccccCCcccccCceecCCCcccccchHHhHhcc----CCCCCCCCCCCcCC
Q 023501 206 DYLCCKITLDIFRDPVITPSGVTYERAVILDHLDK----VGKFDPITREPLRE 254 (281)
Q Consensus 206 ~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~----~~~~cP~~~~~~~~ 254 (281)
..|.|++|...|... ..|..++.. .+..||.|+..|..
T Consensus 13 k~~~C~~C~k~f~~~-----------~~L~~H~~~h~~~~~~~C~~C~~~f~~ 54 (72)
T 1x6e_A 13 KPYGCVECGKAFSRS-----------SILVQHQRVHTGEKPYKCLECGKAFSQ 54 (72)
T ss_dssp CCEECSSSCCEESSH-----------HHHHHHHHGGGCSCCEECSSSCCEESS
T ss_pred CCccCCCCCCccCCH-----------HHHHHHHHhcCCCCCeECCCCCcccCC
Confidence 457898888777663 445555432 23359999987764
No 433
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=43.03 E-value=35 Score=22.22 Aligned_cols=52 Identities=13% Similarity=0.074 Sum_probs=30.9
Q ss_pred CCCCcccccCCcccccC---------------cee-cCCCccccc-chHHhHhccC----CCCCCCCCCCcCC
Q 023501 203 EVPDYLCCKITLDIFRD---------------PVI-TPSGVTYER-AVILDHLDKV----GKFDPITREPLRE 254 (281)
Q Consensus 203 ~~p~~~~c~i~~~~~~~---------------pv~-~~~g~~~~~-~~i~~~~~~~----~~~cP~~~~~~~~ 254 (281)
.....+.|++|+..|.. |.. .-||.+|-. ..|..++... ...|+.|+..|..
T Consensus 13 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 85 (106)
T 2ee8_A 13 KTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQ 85 (106)
T ss_dssp CCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSS
T ss_pred CCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccC
Confidence 33456889999888865 221 236666533 3455555432 2358888877654
No 434
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=42.85 E-value=12 Score=22.43 Aligned_cols=38 Identities=8% Similarity=-0.214 Sum_probs=25.2
Q ss_pred CcccccCCcccccCceecCCCcccccchHHhHhccC----CCCCCCCCCCcCC
Q 023501 206 DYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKV----GKFDPITREPLRE 254 (281)
Q Consensus 206 ~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~----~~~cP~~~~~~~~ 254 (281)
..+.|++|+..|... ..|..++... ...|+.|+..|..
T Consensus 8 ~~~~C~~C~k~f~~~-----------~~L~~H~~~H~~~~~~~C~~C~~~f~~ 49 (70)
T 1x5w_A 8 HPEKCSECSYSCSSK-----------AALRIHERIHCTDRPFKCNYCSFDTKQ 49 (70)
T ss_dssp CSEECSSSSCEESSH-----------HHHHHHHGGGCCSCSEECSSSSCEESS
T ss_pred CCeECCCCCcccCCH-----------HHHHHHHHHcCCCCCEeCCCCCCccCC
Confidence 357888888777663 4566665432 2359999988764
No 435
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=42.66 E-value=1.2e+02 Score=23.70 Aligned_cols=64 Identities=14% Similarity=-0.007 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHH-----HhcCCHHHHHHHHHHHHHh-----CCCch---HHHHHHHHHHH-HhcCHHHHHHHHHHHHh
Q 023501 13 QAEQLRLDGNYY-----FSKDRYGAAIDAYTEAITL-----CPNVP---IYWTNRALCHL-KRNDWTKVEADCRKAIQ 76 (281)
Q Consensus 13 ~a~~~~~~g~~~-----~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~~a~~~~-~~~~~~~A~~~~~~al~ 76 (281)
.+..++..|+-| +..|+-+.|...|+.|.++ .|.+| .+..|.+..|+ -+++.++|...+++|+.
T Consensus 119 kVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd 196 (227)
T 2o8p_A 119 KFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGK 196 (227)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 455566666655 3455666777777777653 34433 44455555444 55677777777777755
No 436
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=42.32 E-value=19 Score=23.63 Aligned_cols=37 Identities=11% Similarity=0.074 Sum_probs=23.2
Q ss_pred cccccCCcccc-cCceecCCCcccccchHHhHhc---cCCCCCCCCCCCcCC
Q 023501 207 YLCCKITLDIF-RDPVITPSGVTYERAVILDHLD---KVGKFDPITREPLRE 254 (281)
Q Consensus 207 ~~~c~i~~~~~-~~pv~~~~g~~~~~~~i~~~~~---~~~~~cP~~~~~~~~ 254 (281)
.+.|+.|+..| .. +..|..+.. .....|+.|+..|..
T Consensus 34 ~~~C~~C~k~F~~~-----------~~~L~~H~~~h~~k~~~C~~Cgk~F~~ 74 (96)
T 2ctd_A 34 SVSCPTCQAVGRKT-----------IEGLKKHMENCKQEMFTCHHCGKQLRS 74 (96)
T ss_dssp CEECTTTCSCEESS-----------HHHHHHHHHHHCCCCCCCSSSCCCCSS
T ss_pred CcCCCCCCCCcccC-----------HHHHHHHHHHHCCCCeECCCCCCeeCC
Confidence 46777776665 44 455555543 234469999988875
No 437
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=42.14 E-value=8.6 Score=21.84 Aligned_cols=14 Identities=29% Similarity=0.707 Sum_probs=11.1
Q ss_pred CCCCCcccccCCcc
Q 023501 202 AEVPDYLCCKITLD 215 (281)
Q Consensus 202 ~~~p~~~~c~i~~~ 215 (281)
.++|+++.||+|+.
T Consensus 25 ~~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 25 DQLPDDWCCPVCGV 38 (46)
T ss_dssp GGSCTTCBCTTTCC
T ss_pred hhCCCCCcCcCCCC
Confidence 35788899999974
No 438
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=41.90 E-value=16 Score=25.49 Aligned_cols=38 Identities=8% Similarity=0.003 Sum_probs=25.4
Q ss_pred cccccCCcccccCc-eecCCCcccccchHHhHhccCCCCCCCCCCCcC
Q 023501 207 YLCCKITLDIFRDP-VITPSGVTYERAVILDHLDKVGKFDPITREPLR 253 (281)
Q Consensus 207 ~~~c~i~~~~~~~p-v~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~ 253 (281)
.-.|.-|.....+. ++...|..|=..| ..|-.|+.+|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~C---------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRC---------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTT---------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccc---------cCcCcCCCccc
Confidence 34688888766665 4666777776666 23777777764
No 439
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=41.80 E-value=68 Score=28.00 Aligned_cols=47 Identities=9% Similarity=-0.003 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhCCC--------chHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 023501 31 GAAIDAYTEAITLCPN--------VPIYWTNRALCHLKRNDWTKVEADCRKAIQL 77 (281)
Q Consensus 31 ~~A~~~~~~al~~~p~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 77 (281)
+..+.-++.|+..-|. -..++..+|.+|+-.|+|++|...++++|..
T Consensus 177 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 177 EQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 4456667777766553 3468888999999999999999999999864
No 440
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=41.73 E-value=9.4 Score=22.51 Aligned_cols=15 Identities=20% Similarity=0.364 Sum_probs=11.6
Q ss_pred CCCCCCcccccCCcc
Q 023501 201 PAEVPDYLCCKITLD 215 (281)
Q Consensus 201 ~~~~p~~~~c~i~~~ 215 (281)
..++|+++.||+|+.
T Consensus 30 fe~lP~dw~CP~Cg~ 44 (54)
T 4rxn_A 30 FKDIPDDWVCPLCGV 44 (54)
T ss_dssp GGGSCTTCBCTTTCC
T ss_pred hhHCCCCCcCcCCCC
Confidence 456788889999874
No 441
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=41.27 E-value=43 Score=29.22 Aligned_cols=48 Identities=15% Similarity=0.131 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhhcC-------------cchhHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501 64 WTKVEADCRKAIQLDH-------------DSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111 (281)
Q Consensus 64 ~~~A~~~~~~al~l~p-------------~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~ 111 (281)
|+..+.+++.|+.+-| .-.-++-.+|.+|+.+|+|++|+....+++..
T Consensus 160 y~~I~~DL~~A~~~L~~~~~~~~~~~gr~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 160 YQQIFDDLNLAQDYLTNYVRKGDGQKFKPNTDVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCSGGGTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcccccCCccccCcccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 5667777777776433 22357889999999999999999999999853
No 442
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=41.14 E-value=18 Score=22.16 Aligned_cols=38 Identities=8% Similarity=-0.046 Sum_probs=25.3
Q ss_pred CcccccCCcccccCceecCCCcccccchHHhHhccC----CCCCCCCCCCcCC
Q 023501 206 DYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKV----GKFDPITREPLRE 254 (281)
Q Consensus 206 ~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~----~~~cP~~~~~~~~ 254 (281)
..+.|++|+..|... ..|..++... ...|+.|+..|..
T Consensus 17 ~~~~C~~C~~~f~~~-----------~~l~~H~~~h~~~~~~~C~~C~~~f~~ 58 (77)
T 2cot_A 17 RRYKCDECGKSFSHS-----------SDLSKHRRTHTGEKPYKCDECGKAFIQ 58 (77)
T ss_dssp CSSBCSSSCCBCSCH-----------HHHHHHHTTTCCSCSEECSSSCCEESS
T ss_pred CCEECCCCCcccCCH-----------HHHHHHHHHcCCCcCeeCCCCCCccCC
Confidence 458899888777663 4556665432 2359999987764
No 443
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=40.85 E-value=1.3e+02 Score=23.64 Aligned_cols=16 Identities=13% Similarity=0.204 Sum_probs=9.6
Q ss_pred hcChHHHHHHHHHHHh
Q 023501 95 RNEYADGIKELEKALN 110 (281)
Q Consensus 95 ~g~~~~A~~~~~kal~ 110 (281)
+++.++|.....+|+.
T Consensus 189 ln~~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 189 ANSPEEAISLAKTTFD 204 (236)
T ss_dssp SSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5666666666555553
No 444
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=40.66 E-value=9.8 Score=23.45 Aligned_cols=38 Identities=13% Similarity=0.106 Sum_probs=25.0
Q ss_pred CcccccCCcccccCceecCCCcccccchHHhHhc--c----CCCCCCCCCCCcCC
Q 023501 206 DYLCCKITLDIFRDPVITPSGVTYERAVILDHLD--K----VGKFDPITREPLRE 254 (281)
Q Consensus 206 ~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~--~----~~~~cP~~~~~~~~ 254 (281)
..|.|++|+..|... ..|..++. . ....||.|+..|..
T Consensus 14 k~~~C~~C~k~f~~~-----------~~L~~H~~~~h~~~~~~~~C~~C~~~f~~ 57 (77)
T 2ct1_A 14 KPYECYICHARFTQS-----------GTMKMHILQKHTENVAKFHCPHCDTVIAR 57 (77)
T ss_dssp CSEECTTTCCEESCH-----------HHHHHHHHHHSSSSCSSEECSSSSCEESS
T ss_pred CCeECCCcCchhCCH-----------HHHHHHHHHhcCCCCCccCCCCCCCccCC
Confidence 357898888777663 55666653 1 12359999987764
No 445
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=39.92 E-value=66 Score=28.14 Aligned_cols=48 Identities=13% Similarity=0.040 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhhcCc-----------------------chhHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501 64 WTKVEADCRKAIQLDHD-----------------------SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111 (281)
Q Consensus 64 ~~~A~~~~~~al~l~p~-----------------------~~~a~~~la~~~~~~g~~~~A~~~~~kal~~ 111 (281)
|+..+.+++.|+.+-|. -.-|+..+|.+|+..|+|++|+...++++..
T Consensus 156 y~~I~~DL~~A~~~Lp~~~~~~~~~~~~~~~~~~~~~r~tk~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 156 LSYAKAELLTAIEDLPYQYGTQTNLYYGSYGAQWQGKLFNKLSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp HHHHHHHHHHHHHHCCSSCCCSSSCBTTBCGGGGTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccCCccccccccccccccccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 56677788888775442 1347888999999999999999999999975
No 446
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=39.82 E-value=10 Score=22.38 Aligned_cols=37 Identities=11% Similarity=0.104 Sum_probs=24.0
Q ss_pred cccccCCcccccCceecCCCcccccchHHhHhcc-C-----CCCCCCCCCCcCC
Q 023501 207 YLCCKITLDIFRDPVITPSGVTYERAVILDHLDK-V-----GKFDPITREPLRE 254 (281)
Q Consensus 207 ~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~-~-----~~~cP~~~~~~~~ 254 (281)
.+.|++|+..|..+ ..+..+... . +..||.|+..|..
T Consensus 10 ~~~C~~C~k~f~~~-----------~~l~~H~~~~H~~~~~~~~C~~C~k~f~~ 52 (66)
T 2drp_A 10 TYRCKVCSRVYTHI-----------SNFCRHYVTSHKRNVKVYPCPFCFKEFTR 52 (66)
T ss_dssp EEECTTTCCEESSH-----------HHHHHHHHHHSSSSCCCEECTTTCCEESC
T ss_pred ceECCCCcchhCCH-----------HHHHHHHHHHcCCCCcCeECCCCCCccCC
Confidence 47788887776653 456666432 1 2259999988764
No 447
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.31 E-value=17 Score=23.01 Aligned_cols=10 Identities=10% Similarity=-0.081 Sum_probs=4.5
Q ss_pred cccccCCccc
Q 023501 207 YLCCKITLDI 216 (281)
Q Consensus 207 ~~~c~i~~~~ 216 (281)
.-.|+-|...
T Consensus 15 ~~~C~~C~~~ 24 (80)
T 2dj7_A 15 PSHCAGCKEE 24 (80)
T ss_dssp CSCCTTTCCC
T ss_pred CCCCcCcCCe
Confidence 3345555443
No 448
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.64 E-value=30 Score=21.02 Aligned_cols=34 Identities=12% Similarity=0.220 Sum_probs=22.8
Q ss_pred CcccccCCcccccC-ceecCCCcccccchHHhHhc
Q 023501 206 DYLCCKITLDIFRD-PVITPSGVTYERAVILDHLD 239 (281)
Q Consensus 206 ~~~~c~i~~~~~~~-pv~~~~g~~~~~~~i~~~~~ 239 (281)
.-|.|..|...+.. +....+|..||+.|..+.+.
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 32 GCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp TTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred cCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 44777777776654 34566777888887776664
No 449
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=38.54 E-value=1.1e+02 Score=22.19 Aligned_cols=29 Identities=10% Similarity=0.141 Sum_probs=18.7
Q ss_pred CcccccCCccccc---C--ceecCCCcccccchH
Q 023501 206 DYLCCKITLDIFR---D--PVITPSGVTYERAVI 234 (281)
Q Consensus 206 ~~~~c~i~~~~~~---~--pv~~~~g~~~~~~~i 234 (281)
..-.|.+|...|. + -+...|.+.+|+.|=
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 4667888887643 1 223557788888774
No 450
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.50 E-value=1.8e+02 Score=24.60 Aligned_cols=90 Identities=9% Similarity=-0.090 Sum_probs=61.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhC---------------CCch--HHHHHHHHHHHHhcCHHHHHHHHHHHHhh-------
Q 023501 22 NYYFSKDRYGAAIDAYTEAITLC---------------PNVP--IYWTNRALCHLKRNDWTKVEADCRKAIQL------- 77 (281)
Q Consensus 22 ~~~~~~~~~~~A~~~~~~al~~~---------------p~~~--~~~~~~a~~~~~~~~~~~A~~~~~~al~l------- 77 (281)
...-...+.++|+.++++..... -..+ .+....+..|+..|+.++|...++++-..
T Consensus 84 ~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~ 163 (393)
T 4b4t_O 84 ASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSI 163 (393)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCc
Confidence 34456679999999998764321 0123 34455677888999999999999888543
Q ss_pred cC-cchhHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501 78 DH-DSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111 (281)
Q Consensus 78 ~p-~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~ 111 (281)
+| .+...|...+..+...+++..+......++..
T Consensus 164 ~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~ 198 (393)
T 4b4t_O 164 PLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLST 198 (393)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 12 13444555677777788888888777777754
No 451
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.28 E-value=15 Score=23.24 Aligned_cols=32 Identities=16% Similarity=0.089 Sum_probs=17.4
Q ss_pred CCcccccCCcccccCceecCCCcccccchHHh
Q 023501 205 PDYLCCKITLDIFRDPVITPSGVTYERAVILD 236 (281)
Q Consensus 205 p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~ 236 (281)
|.-|.|..|...+..--...+|..||..|..+
T Consensus 39 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~cy~~ 70 (79)
T 2cor_A 39 PDHFNCANCGKELTADARELKGELYCLPCHDK 70 (79)
T ss_dssp TTTSBCSSSCCBCCTTCEEETTEEECHHHHHT
T ss_pred CCCCEeCCCCCccCCCCEeECCEEeCHHHHHH
Confidence 34466666665555433344666666666443
No 452
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.26 E-value=23 Score=21.46 Aligned_cols=34 Identities=9% Similarity=0.163 Sum_probs=22.1
Q ss_pred CCcccccCCcccccC-ceecCCCcccccchHHhHh
Q 023501 205 PDYLCCKITLDIFRD-PVITPSGVTYERAVILDHL 238 (281)
Q Consensus 205 p~~~~c~i~~~~~~~-pv~~~~g~~~~~~~i~~~~ 238 (281)
|.-|.|..|...+.. +....+|..||+.|..+.+
T Consensus 29 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 63 (70)
T 2d8z_A 29 KECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLY 63 (70)
T ss_dssp TTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHT
T ss_pred CCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHh
Confidence 345777777776654 3345677888877765543
No 453
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.20 E-value=20 Score=21.75 Aligned_cols=33 Identities=12% Similarity=0.270 Sum_probs=17.5
Q ss_pred CcccccCCcccccCc-eecCCCcccccchHHhHh
Q 023501 206 DYLCCKITLDIFRDP-VITPSGVTYERAVILDHL 238 (281)
Q Consensus 206 ~~~~c~i~~~~~~~p-v~~~~g~~~~~~~i~~~~ 238 (281)
.-|.|..|...+.+- ....+|..||+.|..+-+
T Consensus 30 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~ 63 (70)
T 2d8x_A 30 ECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREK 63 (70)
T ss_dssp TTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHH
T ss_pred cCCEeCCCCCcCCCCccEeECCeEECHHHhhhhc
Confidence 345666666555542 223456666666655544
No 454
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=38.06 E-value=18 Score=23.09 Aligned_cols=16 Identities=38% Similarity=0.648 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHcCCCc
Q 023501 263 IKEAVRAYMDKHGWAY 278 (281)
Q Consensus 263 l~~~i~~~~~~~~~~~ 278 (281)
|+..|.+|+.+++|+|
T Consensus 54 Lk~~V~~~L~~~~~~~ 69 (82)
T 3fau_A 54 IKPAVIKYLISHSFRF 69 (82)
T ss_dssp HHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHhCCCce
Confidence 7899999999999987
No 455
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=37.78 E-value=63 Score=21.86 Aligned_cols=29 Identities=17% Similarity=0.059 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEA 40 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a 40 (281)
.+|+.....|....+.|+|++|...+.+|
T Consensus 18 G~ArS~~~eAl~~Ak~g~fe~A~~~l~eA 46 (105)
T 2e2a_A 18 GDARSKLLEALKAAENGDFAKADSLVVEA 46 (105)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34444444555555555555555554444
No 456
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=37.76 E-value=16 Score=21.97 Aligned_cols=24 Identities=13% Similarity=0.223 Sum_probs=10.1
Q ss_pred ccCCcccccCceecCCCcccccch
Q 023501 210 CKITLDIFRDPVITPSGVTYERAV 233 (281)
Q Consensus 210 c~i~~~~~~~pv~~~~g~~~~~~~ 233 (281)
|+-|.....+.++...|..|=..|
T Consensus 8 C~~C~~~I~~~~~~a~~~~~H~~C 31 (66)
T 1nyp_A 8 CGACRRPIEGRVVNAMGKQWHVEH 31 (66)
T ss_dssp ETTTTEECCSCEECCTTSBEETTT
T ss_pred CcccCCEecceEEEECccccccCc
Confidence 444443333444444444444433
No 457
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=37.33 E-value=66 Score=21.70 Aligned_cols=29 Identities=17% Similarity=0.122 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEA 40 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a 40 (281)
.+|+.....+....+.|+|++|...+.+|
T Consensus 16 G~Ars~~~eAl~~Ak~g~fe~A~~~l~eA 44 (103)
T 1wcr_A 16 GQARSLAYAALKQAKQGDFAAAKAMMDQS 44 (103)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34445555555555555555555555444
No 458
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.16 E-value=11 Score=24.63 Aligned_cols=38 Identities=11% Similarity=0.072 Sum_probs=24.0
Q ss_pred CcccccCCccccc-CceecCCCcccccchHHhHhcc-----CCCCCCCCCCCcCC
Q 023501 206 DYLCCKITLDIFR-DPVITPSGVTYERAVILDHLDK-----VGKFDPITREPLRE 254 (281)
Q Consensus 206 ~~~~c~i~~~~~~-~pv~~~~g~~~~~~~i~~~~~~-----~~~~cP~~~~~~~~ 254 (281)
..|.|++|+..|. . +..|..++.. ....|++|+..|..
T Consensus 23 ~~~~C~~C~k~f~~~-----------~~~L~~H~~~h~~~~~~~~C~~C~k~F~~ 66 (98)
T 2gqj_A 23 GEAVCPTCNVVTRKT-----------LVGLKKHMEVCQKLQDALKCQHCRKQFKS 66 (98)
T ss_dssp SCCCCTTTCCCCSSC-----------SHHHHHHHHHHHHHHHHHSCSSSCCCCSC
T ss_pred CCcCCCCCCCChhhh-----------HHHHHHHHHHHcCCCCCEECCCCCCccCC
Confidence 3477888887776 4 3445555432 22359999888764
No 459
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=37.02 E-value=12 Score=21.77 Aligned_cols=15 Identities=20% Similarity=0.401 Sum_probs=11.4
Q ss_pred CCCCCCcccccCCcc
Q 023501 201 PAEVPDYLCCKITLD 215 (281)
Q Consensus 201 ~~~~p~~~~c~i~~~ 215 (281)
..++|+++.||+|+.
T Consensus 29 f~~lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 29 FEDLPDDWVCPLCGA 43 (52)
T ss_dssp GGGSCTTCBCTTTCC
T ss_pred HhHCCCCCcCCCCCC
Confidence 346788888998874
No 460
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.70 E-value=24 Score=22.74 Aligned_cols=25 Identities=16% Similarity=0.416 Sum_probs=13.0
Q ss_pred cccCCcccccCceecCCCcccccch
Q 023501 209 CCKITLDIFRDPVITPSGVTYERAV 233 (281)
Q Consensus 209 ~c~i~~~~~~~pv~~~~g~~~~~~~ 233 (281)
.|+-|.....+.++...|..|-..|
T Consensus 27 ~C~~C~~~I~~~~v~a~~~~~H~~C 51 (90)
T 2dar_A 27 MCAHCNQVIRGPFLVALGKSWHPEE 51 (90)
T ss_dssp BBSSSCCBCCSCEEEETTEEECTTT
T ss_pred CCccCCCEecceEEEECCccccccC
Confidence 3555555445555555555555544
No 461
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=36.60 E-value=12 Score=22.10 Aligned_cols=15 Identities=13% Similarity=0.089 Sum_probs=10.9
Q ss_pred CCCCCCcccccCCcc
Q 023501 201 PAEVPDYLCCKITLD 215 (281)
Q Consensus 201 ~~~~p~~~~c~i~~~ 215 (281)
..++|+++.||+|+.
T Consensus 30 f~~lP~dw~CP~Cga 44 (55)
T 2v3b_B 30 WEDIPADWVCPDCGV 44 (55)
T ss_dssp GGGSCTTCCCTTTCC
T ss_pred hhHCCCCCcCCCCCC
Confidence 345788888888874
No 462
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.47 E-value=72 Score=22.02 Aligned_cols=16 Identities=13% Similarity=0.058 Sum_probs=9.6
Q ss_pred CHHHHHHHHHHHHHhC
Q 023501 29 RYGAAIDAYTEAITLC 44 (281)
Q Consensus 29 ~~~~A~~~~~~al~~~ 44 (281)
.|++|..+..+||.++
T Consensus 18 ~h~~AF~~Is~AL~~D 33 (116)
T 2dl1_A 18 AYKKAFLFVNKGLNTD 33 (116)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhh
Confidence 4566666666666644
No 463
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=42.71 E-value=7.4 Score=36.03 Aligned_cols=46 Identities=9% Similarity=0.070 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHH
Q 023501 85 HYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELA 130 (281)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~ 130 (281)
....|...+..|+|..|.+.++.++..+|++.....+.......++
T Consensus 464 ~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~ 509 (668)
T 2yhe_A 464 VLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLG 509 (668)
Confidence 3344444555556666666666666665555444444444443333
No 464
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.31 E-value=14 Score=22.70 Aligned_cols=37 Identities=19% Similarity=0.049 Sum_probs=23.5
Q ss_pred cccccCCcccccCceecCCCcccccchHHhHhcc-------CCCCCCCCCCCcCC
Q 023501 207 YLCCKITLDIFRDPVITPSGVTYERAVILDHLDK-------VGKFDPITREPLRE 254 (281)
Q Consensus 207 ~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~-------~~~~cP~~~~~~~~ 254 (281)
.|.|++|+..|... ..|..+... ....|+.|+..|..
T Consensus 7 ~~~C~~C~k~f~~~-----------~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~ 50 (78)
T 2d9h_A 7 GLQCEICGFTCRQK-----------ASLNWHQRKHAETVAALRFPCEFCGKRFEK 50 (78)
T ss_dssp CEECSSSCCEESSH-----------HHHHHHHHHHHHHTTTCCEECTTTCCEESS
T ss_pred CeECCCCCCeeCCH-----------HHHHHHHHHhhccCCCcccCCCCCCchhCC
Confidence 57788888777663 445554331 23359999887764
No 465
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=35.95 E-value=19 Score=24.99 Aligned_cols=8 Identities=0% Similarity=-0.247 Sum_probs=6.8
Q ss_pred CCCCCCCC
Q 023501 244 FDPITREP 251 (281)
Q Consensus 244 ~cP~~~~~ 251 (281)
.||.|+.+
T Consensus 92 ~CP~Cgs~ 99 (119)
T 2kdx_A 92 VCEKCHSK 99 (119)
T ss_dssp CCSSSSSC
T ss_pred cCccccCC
Confidence 59999876
No 466
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=35.37 E-value=2.6 Score=25.26 Aligned_cols=39 Identities=10% Similarity=-0.042 Sum_probs=21.6
Q ss_pred CcccccCCcccccCceecCCCcccccchHH-hHhccCCCCCCCCCCCcCCC
Q 023501 206 DYLCCKITLDIFRDPVITPSGVTYERAVIL-DHLDKVGKFDPITREPLRES 255 (281)
Q Consensus 206 ~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~-~~~~~~~~~cP~~~~~~~~~ 255 (281)
..+.|+.|+..|.... .+. .+....+..|+.|+..|...
T Consensus 13 k~~~C~~C~k~F~~~~-----------~l~~~H~~~k~~~C~~C~k~f~~~ 52 (62)
T 1vd4_A 13 ASFKCPVCSSTFTDLE-----------ANQLFDPMTGTFRCTFCHTEVEED 52 (62)
T ss_dssp SEEECSSSCCEEEHHH-----------HHHHEETTTTEEBCSSSCCBCEEC
T ss_pred CCccCCCCCchhccHH-----------HhHhhcCCCCCEECCCCCCccccC
Confidence 3477888776665432 111 11111233599999888643
No 467
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=35.32 E-value=81 Score=27.90 Aligned_cols=48 Identities=21% Similarity=0.203 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhhcCc-----------chhHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501 64 WTKVEADCRKAIQLDHD-----------SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111 (281)
Q Consensus 64 ~~~A~~~~~~al~l~p~-----------~~~a~~~la~~~~~~g~~~~A~~~~~kal~~ 111 (281)
|+..+.+++.|+..-|. -.-|+..+|.+++..++|++|+...++++..
T Consensus 153 ~~~I~~dL~~A~~~Lp~~~~~~~~gr~tk~aA~allarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 153 YDFILEDLKKATEMLPASYGSREKGRATKGAAYALKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp HHHHHHHHHHHHHHSCSCCCSTTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCccccCCcccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677788888776553 2358889999999999999999999999865
No 468
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.12 E-value=28 Score=20.97 Aligned_cols=33 Identities=9% Similarity=0.109 Sum_probs=21.1
Q ss_pred CcccccCCcccccC-ceecCCCcccccchHHhHh
Q 023501 206 DYLCCKITLDIFRD-PVITPSGVTYERAVILDHL 238 (281)
Q Consensus 206 ~~~~c~i~~~~~~~-pv~~~~g~~~~~~~i~~~~ 238 (281)
.-|.|..|...+.. .....+|..||+.|..+.+
T Consensus 30 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 63 (69)
T 2cur_A 30 DCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFV 63 (69)
T ss_dssp TTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHH
T ss_pred CcCEECCCCCCCCCCccEeECCEEECHHHhHHHh
Confidence 45777777766654 3345677777777766554
No 469
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=34.29 E-value=97 Score=20.24 Aligned_cols=45 Identities=24% Similarity=0.269 Sum_probs=27.0
Q ss_pred cCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501 62 NDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111 (281)
Q Consensus 62 ~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~ 111 (281)
..++.|..+..++|..|..+....- -..+.-|.+++..+.+.+.+
T Consensus 11 ~~h~~AF~~Is~aL~~DE~~~~G~k-----~~A~~~YkkGi~eL~~Gi~V 55 (89)
T 3eab_A 11 VFHKQAFEYISIALRIDEDEKAGQK-----EQAVEWYKKGIEELEKGIAV 55 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCSSSG-----GGSHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhhhcccCCCH-----HHHHHHHHHHHHHHHhhcCC
Confidence 3478888889999888754211111 11112255667777888877
No 470
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.09 E-value=27 Score=21.33 Aligned_cols=32 Identities=16% Similarity=0.024 Sum_probs=20.7
Q ss_pred CCcccccCCcccccCc-eecCCCcccccchHHh
Q 023501 205 PDYLCCKITLDIFRDP-VITPSGVTYERAVILD 236 (281)
Q Consensus 205 p~~~~c~i~~~~~~~p-v~~~~g~~~~~~~i~~ 236 (281)
+.-|.|..|...+.+- ....+|..||+.|-.+
T Consensus 33 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~ 65 (72)
T 1x4l_A 33 NDCFNCKKCSLSLVGRGFLTERDDILCPDCGKD 65 (72)
T ss_dssp TTTCBCSSSCCBCTTSCCEECSSSEECHHHHHT
T ss_pred cccCEeccCCCcCCCCccEeECCEEEChhHcCc
Confidence 3457777777666543 3446778888777644
No 471
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=33.88 E-value=43 Score=29.41 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhhcCc--------chhHHHHHHHHHHHhcChHHHHHHHHHHHh
Q 023501 64 WTKVEADCRKAIQLDHD--------SVKGHYLLGQTLLQRNEYADGIKELEKALN 110 (281)
Q Consensus 64 ~~~A~~~~~~al~l~p~--------~~~a~~~la~~~~~~g~~~~A~~~~~kal~ 110 (281)
|+..+++++.|+.+-|. -.-|+..+|.+|+..++|++|+...++++.
T Consensus 154 y~~I~~DL~~A~~~Lp~~~~~gr~tk~aA~allarvyL~~~~~~~A~~~a~~vi~ 208 (481)
T 3jq1_A 154 WAQAKEDLKTAASLLPITNKIGKPTQGAAYAALGKIYVYEENWQEAINVLEPLTQ 208 (481)
T ss_dssp HHHHHHHHHHHHHHSCSSCSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 67788888888876553 245888899999999999999999998875
No 472
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=33.57 E-value=36 Score=23.11 Aligned_cols=36 Identities=17% Similarity=0.106 Sum_probs=29.4
Q ss_pred CCcccccCCcccccC---ceecCCCcccccchHHhHhcc
Q 023501 205 PDYLCCKITLDIFRD---PVITPSGVTYERAVILDHLDK 240 (281)
Q Consensus 205 p~~~~c~i~~~~~~~---pv~~~~g~~~~~~~i~~~~~~ 240 (281)
|.-|.|..|...+.+ +....+|..||+.|-.+-+..
T Consensus 28 ~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~ 66 (114)
T 1j2o_A 28 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGS 66 (114)
T ss_dssp TTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTS
T ss_pred HhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCc
Confidence 467899999998874 566789999999999887653
No 473
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=33.38 E-value=15 Score=22.92 Aligned_cols=14 Identities=14% Similarity=0.401 Sum_probs=11.5
Q ss_pred CCCCCcccccCCcc
Q 023501 202 AEVPDYLCCKITLD 215 (281)
Q Consensus 202 ~~~p~~~~c~i~~~ 215 (281)
.++|+++.||+|+.
T Consensus 35 ~~lPddw~CP~Cga 48 (70)
T 1dx8_A 35 VDLSDSFMCPACRS 48 (70)
T ss_dssp GGSCTTCBCTTTCC
T ss_pred hhCCCCCcCCCCCC
Confidence 56788999999974
No 474
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=33.36 E-value=27 Score=22.24 Aligned_cols=13 Identities=15% Similarity=0.232 Sum_probs=9.9
Q ss_pred cccccCCcccccC
Q 023501 207 YLCCKITLDIFRD 219 (281)
Q Consensus 207 ~~~c~i~~~~~~~ 219 (281)
.|.|++|...|..
T Consensus 8 ~~~C~~C~~~f~~ 20 (96)
T 2dmd_A 8 PHKCEVCGKCFSR 20 (96)
T ss_dssp CCCBTTTTBCCCC
T ss_pred CeECCCCCCccCC
Confidence 4778888887765
No 475
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=33.01 E-value=83 Score=21.43 Aligned_cols=29 Identities=14% Similarity=0.230 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 023501 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEA 40 (281)
Q Consensus 12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a 40 (281)
.+|+.....+....+.|+|++|...+.+|
T Consensus 20 G~Ars~~~eAl~~Ak~gdfe~A~~~l~eA 48 (109)
T 3k1s_A 20 GNARSFAMEALQFAKQGKMAEADEAMVKA 48 (109)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555555555555556666555555544
No 476
>3dza_A Uncharacterized putative membrane protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=31.86 E-value=1.3e+02 Score=22.81 Aligned_cols=61 Identities=20% Similarity=0.089 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH-HHh------CCC-chHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 023501 15 EQLRLDGNYYFSKDRYGAAIDAYTEA-ITL------CPN-VPIYWTNRALCHLKRNDWTKVEADCRKAI 75 (281)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~A~~~~~~a-l~~------~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al 75 (281)
......++..++.|+-+.|++.+.-+ +.+ -|- ...-...+|..++..|+|.+|-..+..+.
T Consensus 109 ~aAI~~AN~~Lk~Gd~~~A~~~LklAgvdv~~~~allPL~qT~~~V~~A~~ll~~gk~yeAn~aLk~Ae 177 (191)
T 3dza_A 109 ESAIQSANEKLAKGDQKGAIDTLRLAGIGVIENQYLMPLNQTRKAVAQSQELLKAGKYYEANLVLKGAE 177 (191)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTTCEEEEEEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHcCCchhhhhhhCChHhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 55667789999999999999887654 111 121 23456677888888888888877776664
No 477
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.63 E-value=45 Score=20.78 Aligned_cols=33 Identities=12% Similarity=0.159 Sum_probs=16.6
Q ss_pred CcccccCCccccc--Ccee-cCCCcccccchHHhHh
Q 023501 206 DYLCCKITLDIFR--DPVI-TPSGVTYERAVILDHL 238 (281)
Q Consensus 206 ~~~~c~i~~~~~~--~pv~-~~~g~~~~~~~i~~~~ 238 (281)
.-|.|..|...+. +... ..+|..||+.|..+.+
T Consensus 40 ~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~ 75 (81)
T 1x6a_A 40 ECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVV 75 (81)
T ss_dssp TSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHH
T ss_pred ccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHh
Confidence 3455555555553 2333 2455566665554443
No 478
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=31.53 E-value=43 Score=17.69 Aligned_cols=13 Identities=15% Similarity=0.023 Sum_probs=8.4
Q ss_pred cccccCCcccccC
Q 023501 207 YLCCKITLDIFRD 219 (281)
Q Consensus 207 ~~~c~i~~~~~~~ 219 (281)
.|.|++|+..|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2ely_A 12 PFKCVECGKGFSR 24 (46)
T ss_dssp SBCCSSSCCCBSS
T ss_pred CcccCccCcccCC
Confidence 4667777766655
No 479
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=31.47 E-value=2.2e+02 Score=23.40 Aligned_cols=21 Identities=10% Similarity=-0.064 Sum_probs=15.1
Q ss_pred HHHHhcChHHHHHHHHHHHhh
Q 023501 91 TLLQRNEYADGIKELEKALNL 111 (281)
Q Consensus 91 ~~~~~g~~~~A~~~~~kal~~ 111 (281)
-|..+|+...|...+....+.
T Consensus 197 ~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 197 NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 456788898888887766543
No 480
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=30.83 E-value=28 Score=22.12 Aligned_cols=49 Identities=18% Similarity=0.260 Sum_probs=26.5
Q ss_pred CcccccCCcccccCce---------------e-cCCCccccc-chHHhHhcc------CCCCCCCCCCCcCC
Q 023501 206 DYLCCKITLDIFRDPV---------------I-TPSGVTYER-AVILDHLDK------VGKFDPITREPLRE 254 (281)
Q Consensus 206 ~~~~c~i~~~~~~~pv---------------~-~~~g~~~~~-~~i~~~~~~------~~~~cP~~~~~~~~ 254 (281)
..+.|++|...|.... . ..||.+|-. ..|..++.. ....|+.|+..|..
T Consensus 6 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~ 77 (95)
T 2yt9_A 6 SGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSR 77 (95)
T ss_dssp SCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSS
T ss_pred CCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCC
Confidence 4577888887776421 1 225555433 334444432 12358888776654
No 481
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=30.71 E-value=23 Score=22.81 Aligned_cols=40 Identities=8% Similarity=-0.067 Sum_probs=26.0
Q ss_pred CcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCC
Q 023501 206 DYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRE 254 (281)
Q Consensus 206 ~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~ 254 (281)
..-.|.-|.....+.++...|..|=..| ..|-.|+.+|..
T Consensus 24 ~~~~C~~C~~~I~~~~~~a~~~~~H~~C---------F~C~~C~~~L~~ 63 (89)
T 1x64_A 24 RMPLCDKCGSGIVGAVVKARDKYRHPEC---------FVCADCNLNLKQ 63 (89)
T ss_dssp SCCBCTTTCCBCCSCCEESSSCEECTTT---------CCCSSSCCCTTT
T ss_pred cCCCcccCCCEecccEEEECCceECccC---------CEecCCCCCCCC
Confidence 3456777777666666666777776666 136777766654
No 482
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=30.70 E-value=94 Score=21.60 Aligned_cols=17 Identities=12% Similarity=0.337 Sum_probs=8.5
Q ss_pred HHHhcCHHHHHHHHHHH
Q 023501 58 HLKRNDWTKVEADCRKA 74 (281)
Q Consensus 58 ~~~~~~~~~A~~~~~~a 74 (281)
..+.|+|++|...+.+|
T Consensus 47 ~Ak~gdfe~A~~~l~eA 63 (120)
T 3l8r_A 47 AMREKNYILAEQKLQEA 63 (120)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 34445555555555444
No 483
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=30.57 E-value=55 Score=17.16 Aligned_cols=13 Identities=15% Similarity=0.135 Sum_probs=8.9
Q ss_pred cccccCCcccccC
Q 023501 207 YLCCKITLDIFRD 219 (281)
Q Consensus 207 ~~~c~i~~~~~~~ 219 (281)
.|.|++|+..|..
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2em0_A 12 TWKCRECDMCFSQ 24 (46)
T ss_dssp CCCCSSSCCCCSS
T ss_pred CeECCCCCcccCC
Confidence 4677777766665
No 484
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=30.56 E-value=19 Score=22.80 Aligned_cols=37 Identities=14% Similarity=0.181 Sum_probs=23.7
Q ss_pred cccccCCcccccCceecCCCcccccchHHhHhcc----CCCCCCCCCCCcCC
Q 023501 207 YLCCKITLDIFRDPVITPSGVTYERAVILDHLDK----VGKFDPITREPLRE 254 (281)
Q Consensus 207 ~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~----~~~~cP~~~~~~~~ 254 (281)
.+.|++|+..|..+ ..|..+... .+..|+.|+..+..
T Consensus 3 ~~~C~~C~k~f~~~-----------~~L~~H~~~H~~~~~~~C~~C~k~f~~ 43 (88)
T 1llm_C 3 PFQCRICMRNFSRS-----------DHLTTHIRTHTGEKPFACDICGRKFAR 43 (88)
T ss_dssp CEECTTTCCEESCH-----------HHHHHHHHHHHCCCCEECTTTCCEESS
T ss_pred CCcCCCCCCccCCH-----------HHHHHHHHHcCCCCCccCCCCCCccCC
Confidence 46788887777663 445555432 23359999988765
No 485
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=30.54 E-value=83 Score=20.42 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHH
Q 023501 13 QAEQLRLDGNYYFSKDRYGAAIDA 36 (281)
Q Consensus 13 ~a~~~~~~g~~~~~~~~~~~A~~~ 36 (281)
.|..+..-|..++.+||+..|+..
T Consensus 34 mA~~Y~~Da~~fl~kGD~v~Ala~ 57 (86)
T 2oo2_A 34 NIEAYISDSRYFLEKGDLVRAFEC 57 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344444444445555555544444
No 486
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.42 E-value=42 Score=17.65 Aligned_cols=13 Identities=15% Similarity=-0.066 Sum_probs=8.5
Q ss_pred cccccCCcccccC
Q 023501 207 YLCCKITLDIFRD 219 (281)
Q Consensus 207 ~~~c~i~~~~~~~ 219 (281)
.|.|++|+..|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eov_A 12 PYKCSDCGKSFTW 24 (46)
T ss_dssp SCBCSSSCCBCSS
T ss_pred CccCCccChhhCC
Confidence 4667777666655
No 487
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=30.40 E-value=39 Score=23.34 Aligned_cols=35 Identities=11% Similarity=0.098 Sum_probs=28.3
Q ss_pred CCcccccCCccccc--CceecCCCcccccchHHhHhc
Q 023501 205 PDYLCCKITLDIFR--DPVITPSGVTYERAVILDHLD 239 (281)
Q Consensus 205 p~~~~c~i~~~~~~--~pv~~~~g~~~~~~~i~~~~~ 239 (281)
+.-|.|..|...+. +.....+|..||+.|..+.+.
T Consensus 34 ~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 34 LECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTK 70 (123)
T ss_dssp TTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHH
T ss_pred cccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhc
Confidence 46689999998884 356677999999999988764
No 488
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics, center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343}
Probab=30.24 E-value=1.1e+02 Score=27.10 Aligned_cols=48 Identities=15% Similarity=0.188 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhhcCc-------------chhHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501 64 WTKVEADCRKAIQLDHD-------------SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111 (281)
Q Consensus 64 ~~~A~~~~~~al~l~p~-------------~~~a~~~la~~~~~~g~~~~A~~~~~kal~~ 111 (281)
|+..+.+++.|+..-|. -.-|+-.+|.+++..++|++|.+...+++..
T Consensus 167 ~~~I~~DL~~A~~~Lp~~~~~~~~~~gr~tk~aA~allarv~L~~~~~~~A~~~a~~vi~~ 227 (528)
T 3i4g_A 167 LKWCVTEFTAAAADLPRFSAIPAGEAGRACKQAALAFLGRTCMLQKDWKSGAKAFHDIMEL 227 (528)
T ss_dssp HHHHHHHHHHHHHHSCCGGGCCGGGTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccccCCcccCCcCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 56677788888876552 1358889999999999999999999999875
No 489
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=30.15 E-value=19 Score=23.57 Aligned_cols=14 Identities=29% Similarity=0.667 Sum_probs=9.5
Q ss_pred CCCCCcccccCCcc
Q 023501 202 AEVPDYLCCKITLD 215 (281)
Q Consensus 202 ~~~p~~~~c~i~~~ 215 (281)
.++|+++.||+|+.
T Consensus 63 edlPddW~CPvCga 76 (87)
T 1s24_A 63 EDIPDDWCCPDCGA 76 (87)
T ss_dssp GGCCTTCCCSSSCC
T ss_pred hHCCCCCCCCCCCC
Confidence 35677777777763
No 490
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.00 E-value=10 Score=22.73 Aligned_cols=35 Identities=11% Similarity=-0.034 Sum_probs=22.4
Q ss_pred CcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCC
Q 023501 206 DYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRE 254 (281)
Q Consensus 206 ~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~ 254 (281)
..+.|++|+..|.....+.. .....|+.|+..+..
T Consensus 17 ~~~~C~~C~k~f~~~~~l~~--------------~~~~~C~~C~~~f~~ 51 (73)
T 2ctu_A 17 RSQKCSKCGIIFIRRSTLSR--------------RKTPMCEKCRKDSCQ 51 (73)
T ss_dssp SEEECSSSCCEEECCCCCCC--------------SSSCCCHHHHHTCSC
T ss_pred CCeeCCcccchhCCHHHhCc--------------CCCCCCCCCChhhcC
Confidence 45889999888876543322 233358888776654
No 491
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=29.96 E-value=1.3e+02 Score=25.60 Aligned_cols=42 Identities=19% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHHh-----CCCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 023501 33 AIDAYTEAITL-----CPNVPIYWTNRALCHLKRNDWTKVEADCRKA 74 (281)
Q Consensus 33 A~~~~~~al~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 74 (281)
++..|.+||.. ......-|..+|.++++.+++.+|++..-.|
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~A 322 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDA 322 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHH
No 492
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=29.95 E-value=1.3e+02 Score=26.20 Aligned_cols=30 Identities=10% Similarity=-0.017 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 023501 48 PIYWTNRALCHLKRNDWTKVEADCRKAIQL 77 (281)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 77 (281)
..++..+|.+|+-.|+|++|...++++|..
T Consensus 197 ~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 197 LSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 357888999999999999999999999965
No 493
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.54 E-value=56 Score=17.18 Aligned_cols=13 Identities=8% Similarity=-0.018 Sum_probs=9.0
Q ss_pred cccccCCcccccC
Q 023501 207 YLCCKITLDIFRD 219 (281)
Q Consensus 207 ~~~c~i~~~~~~~ 219 (281)
.|.|++|+..|..
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2elz_A 12 PYKCEDCGKGYNR 24 (46)
T ss_dssp SCBCSSSCCBCSS
T ss_pred CeeCcccCchhCC
Confidence 4678877766665
No 494
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=29.47 E-value=52 Score=25.59 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=21.2
Q ss_pred HHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhc
Q 023501 58 HLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRN 96 (281)
Q Consensus 58 ~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g 96 (281)
+.+.|.|++|.+.+++.+.-+|.+-+....|..+-....
T Consensus 124 Ciek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd 162 (235)
T 3bu8_A 124 CIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKN 162 (235)
T ss_dssp HHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTC
T ss_pred HHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC
Confidence 345566666666666666655555555555555444443
No 495
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=29.39 E-value=42 Score=25.69 Aligned_cols=28 Identities=4% Similarity=-0.021 Sum_probs=12.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCchH
Q 023501 22 NYYFSKDRYGAAIDAYTEAITLCPNVPI 49 (281)
Q Consensus 22 ~~~~~~~~~~~A~~~~~~al~~~p~~~~ 49 (281)
.+++++|.|++|.+.+.+....++++..
T Consensus 125 ~VCiekg~Fk~A~eiLkr~f~~~~~~~~ 152 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERIFGDPNSHMP 152 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHHC-----CCT
T ss_pred HHHHHccchHHHHHHHHHHhcCCCCchH
Confidence 3445555555555555555555444433
No 496
>2g0u_A Type III secretion system needle protein; helix-turn-helix, unknown function; NMR {Burkholderia pseudomallei} SCOP: a.2.20.1
Probab=29.35 E-value=1.2e+02 Score=19.99 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcCh
Q 023501 63 DWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEY 98 (281)
Q Consensus 63 ~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~ 98 (281)
+...++....++++.+|++|.. ||.....+++|
T Consensus 31 ~~~~~l~~Al~~L~~~psNPa~---LAe~Qa~lsey 63 (92)
T 2g0u_A 31 DLNKQLQDAQANLTKNPSDPTA---LANYQMIMSEY 63 (92)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHH
Confidence 4566666677777778888765 44444444444
No 497
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=29.15 E-value=47 Score=26.28 Aligned_cols=49 Identities=14% Similarity=0.159 Sum_probs=28.2
Q ss_pred ecCCCcccccchHHhHhcc-CCCCCCCCCCCcCCC-----CCcccHHHHHHHHHH
Q 023501 222 ITPSGVTYERAVILDHLDK-VGKFDPITREPLRES-----QLVPNLAIKEAVRAY 270 (281)
Q Consensus 222 ~~~~g~~~~~~~i~~~~~~-~~~~cP~~~~~~~~~-----~~~~n~~l~~~i~~~ 270 (281)
.+.||+.|...-+...+.. ....||.|+..+.+. +..|...+..+.+.+
T Consensus 124 C~~C~~~~~~~~~~~~~~~~~~p~C~~Cgg~lrP~vv~FgE~lp~~~~~~a~~~~ 178 (246)
T 1yc5_A 124 CVRCEKKYTVEDVIKKLESSDVPLCDDCNSLIRPNIVFFGENLPQDALREAIGLS 178 (246)
T ss_dssp ETTTCCEEEHHHHHHHTTTCSSCBCTTTCCBEEEEECCBTSBCCHHHHHHHHHHH
T ss_pred cCCCCCCCcHHHHHHHhccCCCCCCCCCCCccCcceEECCCCCCHHHHHHHHHHH
Confidence 3467777766555544443 223599999876542 445555555554433
No 498
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=28.86 E-value=92 Score=20.25 Aligned_cols=26 Identities=12% Similarity=0.137 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH
Q 023501 49 IYWTNRALCHLKRNDWTKVEADCRKA 74 (281)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~A~~~~~~a 74 (281)
..|..-|.-|++.|++..|+..+.-+
T Consensus 40 ~~Y~~Da~~fl~kGD~v~Ala~isYa 65 (87)
T 2pmr_A 40 LNYRDDSVYYLEKGDHITSFGCITYA 65 (87)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34666677777777777777665554
No 499
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=28.81 E-value=2.5e+02 Score=24.86 Aligned_cols=36 Identities=17% Similarity=0.118 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHH-hhcCcchhHHHHHHHHHHHhcCh
Q 023501 63 DWTKVEADCRKAI-QLDHDSVKGHYLLGQTLLQRNEY 98 (281)
Q Consensus 63 ~~~~A~~~~~~al-~l~p~~~~a~~~la~~~~~~g~~ 98 (281)
.|++|+.+++++- .-+|+..+-+..++..|...|+|
T Consensus 454 ~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~yE~aGDy 490 (526)
T 2wb7_A 454 EYKAAINDLQKAAQQDDYQMFLNYLNAAKKHEMAGDY 490 (526)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCCHHHHHHHHHHhhhhhhccHH
Confidence 4788888888876 44566677777777776666654
No 500
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.65 E-value=58 Score=17.12 Aligned_cols=13 Identities=15% Similarity=0.153 Sum_probs=9.2
Q ss_pred cccccCCcccccC
Q 023501 207 YLCCKITLDIFRD 219 (281)
Q Consensus 207 ~~~c~i~~~~~~~ 219 (281)
.+.|++|+..|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2ytq_A 12 PYGCSECGKAFSS 24 (46)
T ss_dssp SCBCSSSCCBCSC
T ss_pred CcCCCccChhhCC
Confidence 4678887777666
Done!