BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023504
(281 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FWS6|BBD1_ARATH Bifunctional nuclease 1 OS=Arabidopsis thaliana GN=BBD1 PE=2 SV=1
Length = 325
Score = 430 bits (1106), Expect = e-120, Method: Compositional matrix adjust.
Identities = 215/284 (75%), Positives = 239/284 (84%), Gaps = 12/284 (4%)
Query: 1 MGSLQGPVFCPAVRARQ-GGLYNTVPSTGPVMKARFFRSELWG--FKGLTAVKTKVGVFT 57
M S+Q PV CPA+R RQ G + V TG +K R S+ WG KG+ + T +
Sbjct: 1 MRSVQAPVVCPAIRPRQVGACASLVNYTG--LKPR---SQFWGNRTKGVKSQGTTTTITL 55
Query: 58 RQQNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRD 117
R N K ++C FSS S+GNGS AENFNENDE++VNSSVVEAVEVKSGADGFM+KMRD
Sbjct: 56 RLCN----KSIKCVFSSHSDGNGSTAENFNENDEEYVNSSVVEAVEVKSGADGFMVKMRD 111
Query: 118 GRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIAR 177
GR LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAM NVQIAR
Sbjct: 112 GRQLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIAR 171
Query: 178 PTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIA 237
PT+YQVVKEM++KMGYEVRLVRVTKRVHEAYFAQL+L+KVGN +ECVSFDLRPSDAINIA
Sbjct: 172 PTMYQVVKEMVDKMGYEVRLVRVTKRVHEAYFAQLFLSKVGNASECVSFDLRPSDAINIA 231
Query: 238 VRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDK 281
VRCK+PIQVNKYLAYSDGMRVIESGK+ST +P SDGLLFTE D+
Sbjct: 232 VRCKIPIQVNKYLAYSDGMRVIESGKISTPAPASDGLLFTEQDR 275
>sp|Q93VH2|BBD2_ARATH Bifunctional nuclease 2 OS=Arabidopsis thaliana GN=BBD2 PE=2 SV=1
Length = 329
Score = 417 bits (1072), Expect = e-116, Method: Compositional matrix adjust.
Identities = 201/281 (71%), Positives = 234/281 (83%), Gaps = 2/281 (0%)
Query: 1 MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
M SLQ PV CP+VR RQ G+ + + V K R R + WG + K++ +
Sbjct: 1 MRSLQAPVVCPSVRPRQLGVSALLVNCS-VSKTRSLRKQFWGNQTKND-KSQAATVNLRL 58
Query: 61 NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
+ R+ K ++C FSS S+G GS AENFNENDED+V SSV+EAVEVKSG DGFM+KM+DGR
Sbjct: 59 HLRRYKSIKCLFSSHSDGTGSTAENFNENDEDYVKSSVLEAVEVKSGPDGFMVKMKDGRQ 118
Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTL 180
LRCVHNNPQGG+LP+YAPH AIVLKMEDGTGLLLPIIVLEMPSVLLMAAM NVQIARPT+
Sbjct: 119 LRCVHNNPQGGNLPNYAPHSAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIARPTM 178
Query: 181 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 240
YQVVK+M++KMGYEVRLVRVT RVHEAYFA+LYL+KVG++++CVSFDLRPSDAINIAVRC
Sbjct: 179 YQVVKDMVDKMGYEVRLVRVTTRVHEAYFAELYLSKVGDKSDCVSFDLRPSDAINIAVRC 238
Query: 241 KVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDK 281
KVPIQVNKYLAYSDGMRVI+SGKLS +P SDGLLFTELD+
Sbjct: 239 KVPIQVNKYLAYSDGMRVIDSGKLSKQTPASDGLLFTELDR 279
>sp|Q6YZM6|BBD2_ORYSJ Bifunctional nuclease 2 OS=Oryza sativa subsp. japonica GN=BBD2
PE=2 SV=1
Length = 325
Score = 328 bits (840), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 162/282 (57%), Positives = 220/282 (78%), Gaps = 9/282 (3%)
Query: 3 SLQGPVFCPAVRARQ---GGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQ 59
+++GP+ C AV + + N++ +G + A F + ++ +T + + + ++
Sbjct: 2 AMEGPILCRAVMQAKLPVTMISNSLTKSGQLGTA--FLGCVCKYRNITRLISPIYQPAQK 59
Query: 60 QNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGR 119
A C +FSSSS+GNG MA NF+E+DED+VNS+V+EAVEV+SGA+G++IKMRDG+
Sbjct: 60 NFATVCG----SFSSSSDGNGYMAGNFSESDEDYVNSTVLEAVEVRSGAEGYVIKMRDGK 115
Query: 120 HLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPT 179
+LRCVHNN QG ++P+ AP PAIVL++EDG+ LLPIIVLEMPSVLLMAA+RNV IARPT
Sbjct: 116 NLRCVHNNSQGRNIPESAPQPAIVLRIEDGSETLLPIIVLEMPSVLLMAAIRNVHIARPT 175
Query: 180 LYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVR 239
+YQVVKEMI+KMGYEV+LVR+ KR+ EAY A+L+LTKVG+ TE ++FDLRPSDAINIAVR
Sbjct: 176 IYQVVKEMIDKMGYEVKLVRINKRIQEAYCAELFLTKVGDHTESITFDLRPSDAINIAVR 235
Query: 240 CKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDK 281
CKVPIQV++ LAYSDG+R +E +++ + SDGLLFTELD+
Sbjct: 236 CKVPIQVHRSLAYSDGIRSVEPARMAIAAGMSDGLLFTELDR 277
>sp|Q09LL3|BBD_ORYMI Bifunctional nuclease OS=Oryza minuta GN=BBD PE=2 SV=1
Length = 331
Score = 256 bits (654), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 141/285 (49%), Positives = 202/285 (70%), Gaps = 6/285 (2%)
Query: 1 MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKG--LTAVKTKVGVFTR 58
M + GPV G L + +G +++ R G +G A + G F
Sbjct: 1 MEIINGPVLPRYAAPATGALTSDAKISGQLLRRVHLRRRACGLQGDHYRAARRFFG-FPS 59
Query: 59 QQNARKCKI--VQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMR 116
+++AR + V C++ SSS+G+G+ A +++ + E+FVNSSV+EAVE++S +DGF+IKMR
Sbjct: 60 ERHARSGWVWPVYCSYGSSSDGDGAAAADYDASGEEFVNSSVMEAVELRSVSDGFVIKMR 119
Query: 117 DGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIA 176
DG++LRCV NNP+ L D APH AIVLKMEDG+ LLLPIIV+E PS++L+AA+RN++I
Sbjct: 120 DGKNLRCVQNNPRVLRLRDSAPHHAIVLKMEDGSDLLLPIIVMETPSIMLLAALRNIRIP 179
Query: 177 RPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINI 236
RPT+Y VVKEM E+MGY VRLVR+T+ VH+AY+++LYL K+GNE E +S DL+PSDAINI
Sbjct: 180 RPTIYNVVKEMTERMGYAVRLVRITEMVHDAYYSRLYLAKIGNEEETISLDLKPSDAINI 239
Query: 237 AVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDK 281
A RCKVPIQVN+ +AY++G++V++ ++ SD +T LD+
Sbjct: 240 AFRCKVPIQVNRRIAYNNGLKVVQPTPSESYV-SSDQFQYTRLDR 283
>sp|Q5N8J3|BBD1_ORYSJ Bifunctional nuclease 1 OS=Oryza sativa subsp. japonica GN=BBD1
PE=2 SV=1
Length = 331
Score = 256 bits (653), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 141/285 (49%), Positives = 202/285 (70%), Gaps = 6/285 (2%)
Query: 1 MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKG--LTAVKTKVGVFTR 58
M + GPV G L + +G +++ R G +G A + G F
Sbjct: 1 MEIINGPVLPRYAAPATGALTSDAKISGQLLRRVHLRRRACGLQGDHYRAARRFFG-FPS 59
Query: 59 QQNARKCKI--VQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMR 116
+++AR + V C++ SSS+G+G+ A +++ + E+FVNSSV+EAVE++S +DGF+IKMR
Sbjct: 60 ERHARSGWVWPVCCSYGSSSDGDGAAAADYDASGEEFVNSSVMEAVELRSVSDGFVIKMR 119
Query: 117 DGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIA 176
DG++LRCV NNP+ L D APH AIVLKMEDG+ LLLPIIV+E PS++L+AA+RN++I
Sbjct: 120 DGKNLRCVQNNPRVLRLRDSAPHHAIVLKMEDGSDLLLPIIVMETPSIMLLAALRNIRIP 179
Query: 177 RPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINI 236
RPT+Y VVKEM E+MGY VRLVR+T+ VH+AY+++LYL K+GNE E +S DL+PSDAINI
Sbjct: 180 RPTIYNVVKEMTERMGYAVRLVRITEMVHDAYYSRLYLAKIGNEEETISLDLKPSDAINI 239
Query: 237 AVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDK 281
A RCKVPIQVN+ +AY++G++V++ ++ SD +T LD+
Sbjct: 240 AFRCKVPIQVNRRIAYNNGLKVVQPTPSESYV-SSDQFQYTRLDR 283
>sp|B8A8D2|BBD1_ORYSI Bifunctional nuclease 1 OS=Oryza sativa subsp. indica GN=BBD1 PE=3
SV=1
Length = 331
Score = 253 bits (647), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 141/285 (49%), Positives = 201/285 (70%), Gaps = 6/285 (2%)
Query: 1 MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKG--LTAVKTKVGVFTR 58
M + GPV G L + +G +++ R G +G A + G F
Sbjct: 1 MEIINGPVLPRYAAPATGALTSDAKISGQLLRRVHLRRRACGLQGDHYRAARRFFG-FPS 59
Query: 59 QQNARKCKI--VQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMR 116
+++AR + V C++ SSS+G+G+ A +++ + E+FVNSSV+EAVE++S +DGF+IKMR
Sbjct: 60 ERHARSGWVWPVCCSYGSSSDGDGAAAADYDASGEEFVNSSVMEAVELRSVSDGFVIKMR 119
Query: 117 DGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIA 176
DG++LRCV NNP+ L D APH AIVLKMEDG+ LLLPIIV+E PS++L+AA+RN++I
Sbjct: 120 DGKNLRCVQNNPRVLRLRDSAPHHAIVLKMEDGSDLLLPIIVMETPSIMLLAALRNIRIP 179
Query: 177 RPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINI 236
RPT+Y VVKEM E+MGY VRLVR+T+ VH+AY+++LYL K+GNE E +S DL+PSDAINI
Sbjct: 180 RPTIYNVVKEMTERMGYAVRLVRITEMVHDAYYSRLYLAKIGNEEETISLDLKPSDAINI 239
Query: 237 AVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDK 281
A RCKVPIQVN+ +AY++G++V++ ++ SD T LD+
Sbjct: 240 AFRCKVPIQVNRRIAYNNGLKVVQPTPSESYV-SSDQFQCTRLDR 283
>sp|Q50604|Y1829_MYCTU Uncharacterized protein Rv1829/MT1877 OS=Mycobacterium tuberculosis
GN=Rv1829 PE=4 SV=2
Length = 164
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 7/120 (5%)
Query: 139 HPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLV 198
P ++L+ +G L PI + + + + + V+ RP + +++++I +G+ ++ V
Sbjct: 17 QPVLLLREANGDRYL-PIWIGQSEAAAIALEQQGVEPPRPLTHDLIRDLIAALGHSLKEV 75
Query: 199 RVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRV 258
R+ ++A L + + RPSD++ IA+R VPI V + + G+ +
Sbjct: 76 RIVDLQEGTFYADLIFDR------NIKVSARPSDSVAIALRVGVPIYVEEAVLAQAGLLI 129
>sp|P75010|TERW_SERMA Tellurium resistance protein TerW OS=Serratia marcescens GN=terW
PE=4 SV=1
Length = 155
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 17/113 (15%)
Query: 172 NVQIARPTLYQVVKEMIE---------KMGYEVRLV-------RVTKRVHEAYFAQLYLT 215
+++ + PTL + +KE+ E K G+ LV + +R++EA AQ
Sbjct: 31 SLECSEPTLTRALKELRESYSAEIKYSKAGHSYHLVNPGQLDKKTLRRMNEA-LAQNAEL 89
Query: 216 KVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHS 268
K G T V D A+++++R ++ ++++ A S R KL+ HS
Sbjct: 90 KTGESTGKVVLDKDKKTAVSLSLRMRILRKIDRLAALSGSTRSEAVEKLALHS 142
>sp|B4E8E0|SYM_BURCJ Methionine--tRNA ligase OS=Burkholderia cepacia (strain J2315 / LMG
16656) GN=metG PE=3 SV=1
Length = 718
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 79 NGSMAENFNENDEDF---VNSSVV-EAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLP 134
N +M E+ + N +DF VNS +V + V + S A GF+IK DGR N+P L
Sbjct: 381 NATM-EDIDLNLDDFQARVNSDLVGKYVNIASRAAGFLIKRFDGRVQDSAMNHPLVAKLR 439
Query: 135 DYAPHPA 141
D P A
Sbjct: 440 DAIPQIA 446
>sp|A0K9L0|SYM_BURCH Methionine--tRNA ligase OS=Burkholderia cenocepacia (strain HI2424)
GN=metG PE=3 SV=1
Length = 718
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 79 NGSMAENFNENDEDF---VNSSVV-EAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLP 134
N +M E+ + N +DF VNS +V + V + S A GF+IK DGR N+P L
Sbjct: 381 NATM-EDIDLNLDDFQARVNSDLVGKYVNIASRAAGFLIKRFDGRVQDSAMNHPLVAKLR 439
Query: 135 DYAPHPA 141
D P A
Sbjct: 440 DAIPQIA 446
>sp|Q1BUH6|SYM_BURCA Methionine--tRNA ligase OS=Burkholderia cenocepacia (strain AU
1054) GN=metG PE=3 SV=2
Length = 718
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 79 NGSMAENFNENDEDF---VNSSVV-EAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLP 134
N +M E+ + N +DF VNS +V + V + S A GF+IK DGR N+P L
Sbjct: 381 NATM-EDIDLNLDDFQARVNSDLVGKYVNIASRAAGFLIKRFDGRVQDSAMNHPLVAKLR 439
Query: 135 DYAPHPA 141
D P A
Sbjct: 440 DAIPQIA 446
>sp|Q68W63|EX7L_RICTY Exodeoxyribonuclease 7 large subunit OS=Rickettsia typhi (strain
ATCC VR-144 / Wilmington) GN=xseA PE=3 SV=1
Length = 453
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 226 FDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGS 271
F+L+ + AI +A C PI V +DGM V+ GKLS++S S
Sbjct: 53 FNLKENTAI-LACTCWRPILVKIKFPLNDGMEVVIGGKLSSYSGNS 97
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,559,832
Number of Sequences: 539616
Number of extensions: 4195200
Number of successful extensions: 10345
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 10336
Number of HSP's gapped (non-prelim): 15
length of query: 281
length of database: 191,569,459
effective HSP length: 116
effective length of query: 165
effective length of database: 128,974,003
effective search space: 21280710495
effective search space used: 21280710495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)