Query 023505
Match_columns 281
No_of_seqs 119 out of 1107
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 04:32:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023505.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023505hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03002 oxidoreductase, 2OG-F 100.0 2.3E-70 4.9E-75 483.6 29.5 277 3-280 11-296 (332)
2 COG3491 PcbC Isopenicillin N s 100.0 1.6E-70 3.5E-75 459.5 25.0 263 2-279 1-283 (322)
3 PTZ00273 oxidase reductase; Pr 100.0 6.2E-69 1.3E-73 473.8 27.4 268 2-280 1-287 (320)
4 PLN02997 flavonol synthase 100.0 3.8E-67 8.3E-72 460.7 26.4 259 4-280 30-292 (325)
5 PLN02254 gibberellin 3-beta-di 100.0 2.8E-67 6E-72 466.9 25.5 256 5-280 55-320 (358)
6 PLN02485 oxidoreductase 100.0 8.8E-67 1.9E-71 461.5 26.6 268 1-280 1-299 (329)
7 PLN02515 naringenin,2-oxogluta 100.0 1.3E-66 2.9E-71 462.5 26.7 262 4-278 35-304 (358)
8 PLN02216 protein SRG1 100.0 8.5E-67 1.9E-71 464.4 24.9 261 5-280 51-320 (357)
9 PLN02758 oxidoreductase, 2OG-F 100.0 1.5E-66 3.3E-71 463.4 24.7 263 3-280 49-322 (361)
10 PLN02750 oxidoreductase, 2OG-F 100.0 3.2E-66 7E-71 459.8 26.6 261 4-280 24-304 (345)
11 PLN02276 gibberellin 20-oxidas 100.0 4.4E-66 9.5E-71 460.8 25.7 261 5-280 39-315 (361)
12 PLN02912 oxidoreductase, 2OG-F 100.0 1E-65 2.2E-70 456.0 25.1 259 4-279 39-305 (348)
13 PLN00417 oxidoreductase, 2OG-F 100.0 1.9E-65 4.1E-70 454.3 26.2 262 4-280 42-313 (348)
14 PLN02299 1-aminocyclopropane-1 100.0 9.4E-66 2E-70 451.6 23.9 260 1-280 1-268 (321)
15 PLN02639 oxidoreductase, 2OG-F 100.0 1.6E-65 3.6E-70 453.9 25.3 258 4-280 35-300 (337)
16 PLN02704 flavonol synthase 100.0 1.8E-65 3.8E-70 453.4 24.8 261 3-280 39-308 (335)
17 PLN02393 leucoanthocyanidin di 100.0 2.3E-65 4.9E-70 456.4 24.3 262 3-280 48-323 (362)
18 PLN03178 leucoanthocyanidin di 100.0 3.6E-65 7.7E-70 455.2 24.4 262 4-280 45-321 (360)
19 PLN02156 gibberellin 2-beta-di 100.0 8.2E-65 1.8E-69 446.9 25.6 260 5-280 25-290 (335)
20 PLN02947 oxidoreductase 100.0 4.8E-65 1E-69 454.6 23.4 262 3-280 63-334 (374)
21 PLN02904 oxidoreductase 100.0 2.6E-64 5.6E-69 448.1 25.9 261 5-280 50-317 (357)
22 PLN02365 2-oxoglutarate-depend 100.0 1.3E-63 2.8E-68 435.1 25.4 254 2-279 1-260 (300)
23 KOG0143 Iron/ascorbate family 100.0 4.8E-63 1E-67 433.0 26.5 260 4-279 15-286 (322)
24 PLN02403 aminocyclopropanecarb 100.0 3E-63 6.4E-68 431.7 24.1 255 5-280 1-264 (303)
25 PLN02984 oxidoreductase, 2OG-F 100.0 7.8E-63 1.7E-67 435.3 25.2 259 4-276 36-306 (341)
26 PLN03001 oxidoreductase, 2OG-F 100.0 4.4E-54 9.6E-59 366.9 18.6 218 50-280 2-225 (262)
27 PF03171 2OG-FeII_Oxy: 2OG-Fe( 99.9 8.6E-25 1.9E-29 160.2 7.7 94 165-268 2-98 (98)
28 PF14226 DIOX_N: non-haem diox 99.9 1.9E-24 4.2E-29 163.3 7.9 106 7-115 1-116 (116)
29 PLN03176 flavanone-3-hydroxyla 99.7 1.5E-17 3.2E-22 125.4 9.1 73 4-76 35-114 (120)
30 PF13640 2OG-FeII_Oxy_3: 2OG-F 96.0 0.0056 1.2E-07 44.3 2.5 81 167-267 1-100 (100)
31 PRK05467 Fe(II)-dependent oxyg 95.3 0.15 3.2E-06 42.8 9.0 47 204-267 130-177 (226)
32 PF12851 Tet_JBP: Oxygenase do 94.8 0.085 1.9E-06 42.3 6.0 67 184-267 85-170 (171)
33 smart00702 P4Hc Prolyl 4-hydro 94.2 0.49 1.1E-05 37.9 9.3 106 135-267 60-178 (178)
34 PRK08130 putative aldolase; Va 88.7 0.7 1.5E-05 38.4 4.4 36 6-41 127-162 (213)
35 PRK08333 L-fuculose phosphate 88.1 0.72 1.6E-05 37.4 4.0 36 6-41 120-155 (184)
36 PRK15401 alpha-ketoglutarate-d 87.3 9.2 0.0002 31.8 10.1 80 167-265 118-211 (213)
37 PRK05874 L-fuculose-phosphate 85.8 1.1 2.5E-05 37.3 4.1 36 6-41 127-162 (217)
38 PRK06755 hypothetical protein; 83.2 1.3 2.7E-05 36.8 3.2 36 6-41 136-171 (209)
39 PRK08087 L-fuculose phosphate 82.8 1.9 4.1E-05 35.9 4.1 36 6-41 122-157 (215)
40 PF07350 DUF1479: Protein of u 82.4 1 2.2E-05 41.1 2.5 55 4-59 47-101 (416)
41 PRK08660 L-fuculose phosphate 82.4 2.1 4.5E-05 34.5 4.2 35 6-41 115-149 (181)
42 PRK06833 L-fuculose phosphate 82.1 1.8 3.9E-05 36.0 3.8 36 6-41 124-159 (214)
43 PF00596 Aldolase_II: Class II 79.7 1.1 2.3E-05 36.2 1.6 37 5-41 122-159 (184)
44 PRK03634 rhamnulose-1-phosphat 79.3 2.7 5.8E-05 36.4 4.0 36 6-41 179-214 (274)
45 PF13532 2OG-FeII_Oxy_2: 2OG-F 79.0 2.9 6.3E-05 33.8 4.0 80 166-264 98-193 (194)
46 TIGR02624 rhamnu_1P_ald rhamnu 77.9 3 6.4E-05 36.1 3.8 36 6-41 177-212 (270)
47 TIGR01086 fucA L-fuculose phos 75.8 3.7 8E-05 34.1 3.8 36 6-41 121-156 (214)
48 PRK06357 hypothetical protein; 74.4 5.5 0.00012 33.2 4.4 36 6-41 130-171 (216)
49 PRK06557 L-ribulose-5-phosphat 72.9 4.2 9.2E-05 33.9 3.4 37 5-41 129-167 (221)
50 cd00398 Aldolase_II Class II A 70.2 4.1 8.9E-05 33.6 2.8 37 5-41 121-159 (209)
51 TIGR03328 salvage_mtnB methylt 70.1 6.7 0.00015 32.0 4.0 35 6-41 126-163 (193)
52 PF13759 2OG-FeII_Oxy_5: Putat 69.4 9.6 0.00021 27.3 4.3 36 217-264 63-100 (101)
53 PRK07490 hypothetical protein; 67.3 7.6 0.00016 33.0 3.8 36 6-41 133-169 (245)
54 TIGR00568 alkb DNA alkylation 66.7 51 0.0011 26.3 8.2 62 166-236 96-162 (169)
55 TIGR02409 carnitine_bodg gamma 62.5 13 0.00027 33.7 4.6 51 5-58 108-159 (366)
56 PRK06754 mtnB methylthioribulo 61.7 9.4 0.0002 31.5 3.3 35 6-41 137-172 (208)
57 TIGR02466 conserved hypothetic 61.5 14 0.0003 30.4 4.2 34 219-264 161-196 (201)
58 PRK06661 hypothetical protein; 57.5 14 0.00031 31.0 3.7 36 6-41 123-160 (231)
59 PRK09553 tauD taurine dioxygen 55.7 21 0.00045 30.9 4.6 50 7-59 16-65 (277)
60 PRK05834 hypothetical protein; 53.9 18 0.0004 29.5 3.7 36 6-41 121-160 (194)
61 PRK09220 methylthioribulose-1- 47.8 28 0.0006 28.7 3.9 47 6-53 134-185 (204)
62 PRK07044 aldolase II superfami 46.7 28 0.00061 29.7 3.9 36 6-41 138-174 (252)
63 PLN00052 prolyl 4-hydroxylase; 45.0 1.1E+02 0.0023 27.1 7.3 47 220-270 206-254 (310)
64 COG3128 PiuC Uncharacterized i 44.9 1.3E+02 0.0027 24.6 6.9 36 220-267 144-180 (229)
65 PRK08193 araD L-ribulose-5-pho 42.7 43 0.00093 28.1 4.4 36 6-41 124-172 (231)
66 PF11243 DUF3045: Protein of u 41.9 25 0.00053 24.0 2.2 21 22-42 36-56 (89)
67 TIGR02410 carnitine_TMLD trime 40.9 48 0.001 29.9 4.7 49 6-57 100-150 (362)
68 PF01471 PG_binding_1: Putativ 39.9 29 0.00063 21.6 2.3 42 19-60 3-44 (57)
69 PRK06486 hypothetical protein; 38.8 41 0.00088 28.9 3.7 36 6-41 148-185 (262)
70 PF07283 TrbH: Conjugal transf 36.8 40 0.00086 25.3 2.9 33 9-41 26-58 (121)
71 COG2140 Thermophilic glucose-6 36.7 68 0.0015 26.5 4.4 71 163-242 88-158 (209)
72 TIGR03581 EF_0839 conserved hy 33.9 1.1E+02 0.0025 25.4 5.3 41 14-55 159-200 (236)
73 PRK13883 conjugal transfer pro 33.2 57 0.0012 25.5 3.3 32 9-40 54-85 (151)
74 PLN02452 phosphoserine transam 30.1 92 0.002 28.2 4.7 50 7-57 300-361 (365)
75 PRK13835 conjugal transfer pro 29.0 66 0.0014 24.9 3.0 29 9-38 60-88 (145)
76 TIGR00760 araD L-ribulose-5-ph 28.7 88 0.0019 26.2 4.1 36 6-41 125-173 (231)
77 PRK06208 hypothetical protein; 28.7 59 0.0013 28.2 3.1 36 6-41 163-200 (274)
78 COG3695 Predicted methylated D 26.8 25 0.00055 25.3 0.4 23 232-255 41-63 (103)
79 PF09989 DUF2229: CoA enzyme a 25.9 1.7E+02 0.0037 24.4 5.3 41 7-55 118-158 (221)
80 PF02668 TauD: Taurine catabol 25.4 1.2E+02 0.0026 25.2 4.4 30 19-48 24-53 (258)
81 COG0289 DapB Dihydrodipicolina 25.2 2E+02 0.0044 24.8 5.5 44 9-55 73-117 (266)
82 PRK10628 LigB family dioxygena 24.5 97 0.0021 26.4 3.5 39 1-40 105-148 (246)
83 KOG2631 Class II aldolase/addu 24.2 1.9E+02 0.0041 24.0 4.9 62 4-66 154-223 (238)
84 COG3615 TehB Uncharacterized p 22.8 88 0.0019 22.4 2.4 23 247-269 76-99 (99)
85 PF08823 PG_binding_2: Putativ 22.7 1.3E+02 0.0029 20.3 3.3 35 17-51 14-48 (74)
86 PRK08324 short chain dehydroge 21.8 1.2E+02 0.0027 29.9 4.2 35 6-41 155-192 (681)
87 PF00072 Response_reg: Respons 21.5 76 0.0016 22.2 2.1 56 6-61 45-102 (112)
88 PF01361 Tautomerase: Tautomer 20.8 1.5E+02 0.0032 18.6 3.2 26 130-155 14-39 (60)
No 1
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=2.3e-70 Score=483.63 Aligned_cols=277 Identities=48% Similarity=0.866 Sum_probs=239.4
Q ss_pred CCCCCcEEeCCCcchHHHHHHHHHHHHhcceEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhccccC-CCcccccccc
Q 023505 3 EALQLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKE-HRGYTALCDE 81 (281)
Q Consensus 3 ~~~~lPvIDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~-~~Gy~~~~~e 81 (281)
....||+|||+..++..++++|.+||+++|||||+||||+.++++++++++++||+||.|+|+++.... .+||.+.+.+
T Consensus 11 ~~~~iP~IDl~~~~~~~~~~~l~~Ac~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~LP~e~K~k~~~~~~~~GY~~~~~e 90 (332)
T PLN03002 11 KVSSLNCIDLANDDLNHSVASLKQACLDCGFFYVINHGINEEFMDDVFEQSKKFFALPLEEKMKVLRNEKHRGYTPVLDE 90 (332)
T ss_pred CCCCCCEEeCCchhHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCCCCCCcCccccc
Confidence 456899999997667778999999999999999999999999999999999999999999999986655 8999988777
Q ss_pred ccCCCCCCCCCCceeeecC---CCCC-----CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhh
Q 023505 82 ILDPSSTSEGDPKESFYIG---PLEG-----TLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDF 153 (281)
Q Consensus 82 ~~~~~~~~~~d~~E~~~~~---p~~~-----~~~~~~~wP~~~~~~~f~~~~~~y~~~~~~~~~~ll~~l~~~lgl~~~~ 153 (281)
..++......|++|.|.++ |.++ .+..+|.||..+..|+|++.+++|++.|.+++..||++|+++||+++++
T Consensus 91 ~~~~~~~~~~d~kE~f~~~~~~p~~~~~~~~~~~~~n~wP~~~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~ 170 (332)
T PLN03002 91 KLDPKNQINGDHKEGYYIGIEVPKDDPHWDKPFYGPNPWPDADVLPGWRETMEKYHQEALRVSMAIAKLLALALDLDVGY 170 (332)
T ss_pred ccccccCCCCcceeeeEecccCCCCCccccccccCCCCCcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence 6554332246999999987 3332 2346899998645689999999999999999999999999999999999
Q ss_pred hcccCCcCCcccceeecccCCCCCCCCCCccccccCccCCCccEEecCCCCceeEeeCCCCCCCceEEccCCCCcEEEeh
Q 023505 154 FEKVGALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQVCREKFNQPRLWEDVPNIKGALIVNI 233 (281)
Q Consensus 154 ~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~~~H~D~~~lTll~~~~~~GLqv~~~~~~~~~~w~~v~~~~g~~ivn~ 233 (281)
|.+...+..+.+.||++|||+++.+ ....+|+++|||+|+||||+||+++||||+.++...+++|++|+|.||++|||+
T Consensus 171 f~~~~~~~~~~~~lrl~~YP~~~~~-~~~~~g~~~HTD~g~lTlL~qd~v~GLQV~~~~~~~~g~Wi~Vpp~pg~~VVNi 249 (332)
T PLN03002 171 FDRTEMLGKPIATMRLLRYQGISDP-SKGIYACGAHSDFGMMTLLATDGVMGLQICKDKNAMPQKWEYVPPIKGAFIVNL 249 (332)
T ss_pred hccccccCCCchheeeeeCCCCCCc-ccCccccccccCCCeEEEEeeCCCCceEEecCCCCCCCcEEECCCCCCeEEEEH
Confidence 9821144556789999999998754 235789999999999999999999999998754211255999999999999999
Q ss_pred hhhHHHHhCCcccccceeecCCCCCeEEEEeeecCCCCCCCccCCCC
Q 023505 234 GDMMERWTNCLFRSTLHRVMSSGQERYSVIICFLSHLCFPHSNAFGC 280 (281)
Q Consensus 234 Gd~l~~~T~G~~ks~~HRV~~~~~~R~S~~~f~~p~~d~~~~~~~~~ 280 (281)
||+|++||||+|||++|||+.++.+||||+||++|+.|++|.|+|+|
T Consensus 250 GD~L~~wTng~~kSt~HRVv~~~~~R~Sia~F~~p~~d~~i~pl~~~ 296 (332)
T PLN03002 250 GDMLERWSNGFFKSTLHRVLGNGQERYSIPFFVEPNHDCLVECLPTC 296 (332)
T ss_pred HHHHHHHhCCeeECcCCeecCCCCCeeEEEEEecCCCCeeEecCCcc
Confidence 99999999999999999999887799999999999999999999875
No 2
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=100.00 E-value=1.6e-70 Score=459.53 Aligned_cols=263 Identities=41% Similarity=0.709 Sum_probs=239.8
Q ss_pred CCCCCCcEEeCCC------cchHHHHHHHHHHHHhcceEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhccccC---C
Q 023505 2 TEALQLPVIDLSS------PDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKE---H 72 (281)
Q Consensus 2 ~~~~~lPvIDl~~------~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~---~ 72 (281)
|...+||+|||+. .++..++++|++||+++|||||+||||+..++++++++++.||+||.|+|.++.... .
T Consensus 1 ~~~~~lp~idls~~~~~~~~~~~~~~~~l~~A~r~~GFf~l~~~~i~~~~~~~~~~~arqFFaLp~eeK~~~~~~~~~~~ 80 (322)
T COG3491 1 MSTRDLPIIDLSELAGSDPGARRRVAQELRAACREIGFFYLVNHGIDAALIDEAFALARQFFALPVEEKLKILMVLGRQH 80 (322)
T ss_pred CCCCcCceeccHHhcCCCcHHHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHhcCccc
Confidence 4567999999981 257889999999999999999999999999999999999999999999999987654 8
Q ss_pred CccccccccccCCCCCCCCCCceeeecCCCCC----------CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 023505 73 RGYTALCDEILDPSSTSEGDPKESFYIGPLEG----------TLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHL 142 (281)
Q Consensus 73 ~Gy~~~~~e~~~~~~~~~~d~~E~~~~~p~~~----------~~~~~~~wP~~~~~~~f~~~~~~y~~~~~~~~~~ll~~ 142 (281)
+||.+.+.|.+++. .||+|.+++++.-+ .+.++|.||. +|+|++.+.+|++.|.+++.+||++
T Consensus 81 rGY~~~~~E~t~g~----~d~kE~~d~g~~~~~~~~~~~~~~~~~gpN~wP~---ip~~r~~ll~~~~~~~~~~~rLL~a 153 (322)
T COG3491 81 RGYTPHGGELTDGE----PDYKEGLDMGPDLDAELAGVRAGTPLHGPNLWPA---IPGLRDALLQYYRAMTAVGLRLLRA 153 (322)
T ss_pred cccccCcccccCCc----cchhhhcccccccccccCCCccCCCcCCCCCCcc---chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988763 49999999994321 5679999993 5999999999999999999999999
Q ss_pred HHHHcCCChhhhcccCCcCCcccceeecccCCCCCCCCCCccccccCccCCCccEEecCCCCceeEeeCCCCCCCceEEc
Q 023505 143 IALALNLNEDFFEKVGALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQVCREKFNQPRLWEDV 222 (281)
Q Consensus 143 l~~~lgl~~~~~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~~~H~D~~~lTll~~~~~~GLqv~~~~~~~~~~w~~v 222 (281)
||.+|+|++++|. ..+.++.+.+|+++||+.+.. ++.-+.++|+|+|+||||+||.++||||+.+.++ |++|
T Consensus 154 iA~~LdL~~d~Fd--~~~~d~~~~~RLlrYP~~~~~--~~~~~~GaHtD~G~lTLl~Qd~~~GLqv~~~~g~----Wl~v 225 (322)
T COG3491 154 IALGLDLPEDFFD--KRTSDPNSVLRLLRYPSRPAR--EGADGVGAHTDYGLLTLLFQDDVGGLEVRPPNGG----WLDV 225 (322)
T ss_pred HHHHcCCChhhhh--hccCCchheEEEEecCCCccc--ccccccccccCCCeEEEEEecccCCeEEecCCCC----eeEC
Confidence 9999999999999 778899999999999988764 5556779999999999999999999999999665 9999
Q ss_pred cCCCCcEEEehhhhHHHHhCCcccccceeecCC-CCCeEEEEeeecCCCCCCCccCCC
Q 023505 223 PNIKGALIVNIGDMMERWTNCLFRSTLHRVMSS-GQERYSVIICFLSHLCFPHSNAFG 279 (281)
Q Consensus 223 ~~~~g~~ivn~Gd~l~~~T~G~~ks~~HRV~~~-~~~R~S~~~f~~p~~d~~~~~~~~ 279 (281)
+|.||++|||+||+||+||||+||||+|||+.| +.+||||+||+.|+.|+.|.|+++
T Consensus 226 ~P~pgtlvVNiGdmLe~~Tng~lrST~HRV~~~~~~~R~SipfF~~p~~Da~I~Pl~~ 283 (322)
T COG3491 226 PPIPGTLVVNIGDMLERWTNGRLRSTVHRVRNPPGVDRYSIPFFLEPNFDAEIAPLLP 283 (322)
T ss_pred CCCCCeEEEeHHHHHHHHhCCeeccccceeecCCCccceeeeeeccCCCCccccccCC
Confidence 999999999999999999999999999999984 569999999999999999998775
No 3
>PTZ00273 oxidase reductase; Provisional
Probab=100.00 E-value=6.2e-69 Score=473.84 Aligned_cols=268 Identities=39% Similarity=0.664 Sum_probs=236.4
Q ss_pred CCCCCCcEEeCCC------cchHHHHHHHHHHHHhcceEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhccccC---C
Q 023505 2 TEALQLPVIDLSS------PDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKE---H 72 (281)
Q Consensus 2 ~~~~~lPvIDl~~------~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~---~ 72 (281)
|++++||||||+. ..+.+++++|.+||+++|||||+||||+.++++++++++++||++|.|+|+++.... .
T Consensus 1 ~~~~~iPvIDl~~~~~~~~~~~~~~~~~l~~A~~~~Gff~v~nhgi~~~l~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~ 80 (320)
T PTZ00273 1 MTRASLPVIDVSPLFGGESAEKMRVAKQIDEACRTWGFFYIVGHPIPQERIEKVLKMAKTFFSLPMEEKLKIDIRKSRLH 80 (320)
T ss_pred CCCCCCCEEecHHhcCCChHHHHHHHHHHHHHHHhCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccCCCCCC
Confidence 4578999999972 124568899999999999999999999999999999999999999999999975432 7
Q ss_pred CccccccccccCCCCCCCCCCceeeecC---CCCC-------CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 023505 73 RGYTALCDEILDPSSTSEGDPKESFYIG---PLEG-------TLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHL 142 (281)
Q Consensus 73 ~Gy~~~~~e~~~~~~~~~~d~~E~~~~~---p~~~-------~~~~~~~wP~~~~~~~f~~~~~~y~~~~~~~~~~ll~~ 142 (281)
+||.+.+.+...... ..|++|.|+++ |.+. .+..+|.||.. +|.|++.+++|++.|.+++.+|+++
T Consensus 81 ~GY~~~~~e~~~~~~--~~d~kE~~~~~~~~~~~~~~~~~~~~~~~~n~wP~~--~p~fr~~~~~y~~~~~~l~~~ll~~ 156 (320)
T PTZ00273 81 RGYGAFGAEQLDPSK--PYDYKETFDMGCHLPKDHPDVMAGKPLRGPNNHPTQ--VEGWMELMETHYRDMQALALVLLRA 156 (320)
T ss_pred CCCCCccccccCCCC--CCCccceEEeeccCCcccchhhccccccCCCCCCCc--chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899988877654332 45999999987 2221 23468999975 4899999999999999999999999
Q ss_pred HHHHcCCChhhhcccCCcCCcccceeecccCCCCCCCCCCccccccCccCCCccEEecCCCCceeEeeCCCCCCCceEEc
Q 023505 143 IALALNLNEDFFEKVGALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQVCREKFNQPRLWEDV 222 (281)
Q Consensus 143 l~~~lgl~~~~~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~~~H~D~~~lTll~~~~~~GLqv~~~~~~~~~~w~~v 222 (281)
|+++||+++++|. +.+..+.+.||++|||+++.. .+..+|+++|||+|+||||+||.++||||+..+|+ |++|
T Consensus 157 la~~Lgl~~~~f~--~~~~~~~~~lrl~~YP~~~~~-~~~~~g~~~HTD~g~lTlL~qd~~~GLqV~~~~g~----Wi~V 229 (320)
T PTZ00273 157 LALAIGLREDFFD--SKFMEPLSVFRMKHYPALPQT-KKGRTVCGEHTDYGIITLLYQDSVGGLQVRNLSGE----WMDV 229 (320)
T ss_pred HHHHhCcCHHHHH--HhhCCCcceeeeeecCCCCCc-cccCcccccccCCCeEEEEecCCCCceEEECCCCC----EEeC
Confidence 9999999999998 777778889999999999754 34678999999999999999999999999987655 9999
Q ss_pred cCCCCcEEEehhhhHHHHhCCcccccceeecCCCCCeEEEEeeecCCCCCCCccCCCC
Q 023505 223 PNIKGALIVNIGDMMERWTNCLFRSTLHRVMSSGQERYSVIICFLSHLCFPHSNAFGC 280 (281)
Q Consensus 223 ~~~~g~~ivn~Gd~l~~~T~G~~ks~~HRV~~~~~~R~S~~~f~~p~~d~~~~~~~~~ 280 (281)
+|.||++|||+||+|++||||+|||++|||+.++.+|||++||++|+.|++|.|+|+|
T Consensus 230 ~p~pg~lvVNvGD~l~~~TnG~~kSt~HRVv~~~~~R~Si~~F~~p~~d~~i~pl~~~ 287 (320)
T PTZ00273 230 PPLEGSFVVNIGDMMEMWSNGRYRSTPHRVVNTGVERYSMPFFCEPNPNVIIKCLDNC 287 (320)
T ss_pred CCCCCeEEEEHHHHHHHHHCCeeeCCCccccCCCCCeEEEEEEEcCCCCceEecCccc
Confidence 9999999999999999999999999999999888899999999999999999999874
No 4
>PLN02997 flavonol synthase
Probab=100.00 E-value=3.8e-67 Score=460.68 Aligned_cols=259 Identities=28% Similarity=0.448 Sum_probs=225.7
Q ss_pred CCCCcEEeCCCcchHHHHHHHHHHHHhcceEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhccccC-CCccccccccc
Q 023505 4 ALQLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKE-HRGYTALCDEI 82 (281)
Q Consensus 4 ~~~lPvIDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~-~~Gy~~~~~e~ 82 (281)
.++||||||+..++++++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++.... .+||.....+
T Consensus 30 ~~~IPvIDls~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~GY~~~~~~- 108 (325)
T PLN02997 30 AVDVPVVDLSVSDEDFLVREVVKASEEWGVFQVVNHGIPTELMRQLQMVGKQFFELPEAEKETVAKEEDFEGYKRNYLG- 108 (325)
T ss_pred CCCCCeEECCCCCHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccCCCccccCccccc-
Confidence 56899999997667788999999999999999999999999999999999999999999999987655 8899865332
Q ss_pred cCCCCCCCCCCceeeecCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhcccCCcCC
Q 023505 83 LDPSSTSEGDPKESFYIGPLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEKVGALDA 162 (281)
Q Consensus 83 ~~~~~~~~~d~~E~~~~~p~~~~~~~~~~wP~~~~~~~f~~~~~~y~~~~~~~~~~ll~~l~~~lgl~~~~~~~~~~~~~ 162 (281)
...|++|.+............|.||..+ |+|++.+++|++.|.+++.+|+++|+++||+++++|. +.+..
T Consensus 109 ------~~~d~~e~~~~~~~p~~~~~~n~wP~~~--~~fr~~~~~y~~~~~~l~~~ll~~ia~~Lgl~~~~f~--~~~~~ 178 (325)
T PLN02997 109 ------GINNWDEHLFHRLSPPSIINYKYWPKNP--PQYREVTEEYTKHMKRLTEKILGWLSEGLGLPRETFT--QSIGG 178 (325)
T ss_pred ------CCCCccceeEeeecCccccccccCCCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH--HHhcC
Confidence 1357888765431111123468999865 8999999999999999999999999999999999998 65553
Q ss_pred --cccceeecccCCCCCCCCCCccccccCccCCCccEEecCCCCceeEeeCCCCCCCceEEccCCCCcEEEehhhhHHHH
Q 023505 163 --PMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQVCREKFNQPRLWEDVPNIKGALIVNIGDMMERW 240 (281)
Q Consensus 163 --~~~~lr~~~Yp~~~~~~~~~~~~~~~H~D~~~lTll~~~~~~GLqv~~~~~~~~~~w~~v~~~~g~~ivn~Gd~l~~~ 240 (281)
..+.||++||||++.+ +..+|+++|||+|+||||+||+++||||+.++. |++|+|.||++|||+||+|++|
T Consensus 179 ~~~~~~lRl~~YP~~~~~--~~~~g~~~HTD~g~lTlL~Qd~v~GLQV~~~g~-----Wi~V~p~pgalvVNiGD~Le~~ 251 (325)
T PLN02997 179 ETAEYVLRVNFYPPTQDT--ELVIGAAAHSDMGAIALLIPNEVPGLQAFKDEQ-----WLDLNYINSAVVVIIGDQLMRM 251 (325)
T ss_pred CcccceeeeecCCCCCCc--ccccCccCccCCCceEEEecCCCCCEEEeECCc-----EEECCCCCCeEEEEechHHHHH
Confidence 3468999999999764 567899999999999999999999999996544 9999999999999999999999
Q ss_pred hCCcccccceeecCC-CCCeEEEEeeecCCCCCCCccCCCC
Q 023505 241 TNCLFRSTLHRVMSS-GQERYSVIICFLSHLCFPHSNAFGC 280 (281)
Q Consensus 241 T~G~~ks~~HRV~~~-~~~R~S~~~f~~p~~d~~~~~~~~~ 280 (281)
|||+|||++|||+.+ ...|||++||++|+.|+.|.|+|.|
T Consensus 252 TNG~~kSt~HRVv~~~~~~R~Si~fF~~P~~d~~i~Plp~~ 292 (325)
T PLN02997 252 TNGRFKNVLHRAKTDKERLRISWPVFVAPRADMSVGPLPEL 292 (325)
T ss_pred hCCccccccceeeCCCCCCEEEEEEEecCCCCCeEeCChHH
Confidence 999999999999986 4589999999999999999999863
No 5
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=100.00 E-value=2.8e-67 Score=466.86 Aligned_cols=256 Identities=30% Similarity=0.457 Sum_probs=223.6
Q ss_pred CCCcEEeCCCcchHHHHHHHHHHHHhcceEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhccccC--CCccccccccc
Q 023505 5 LQLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKE--HRGYTALCDEI 82 (281)
Q Consensus 5 ~~lPvIDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~--~~Gy~~~~~e~ 82 (281)
.+||||||++. +.+++|.+||++||||||+||||+.++++++++.+++||++|.|+|+++.... ++||...+...
T Consensus 55 ~~iPvIDl~~~---~~~~~l~~Ac~~~GFF~vvnHGI~~~l~~~~~~~~~~FF~LP~EeK~k~~~~~~~~~Gy~~~~~~~ 131 (358)
T PLN02254 55 ESIPVIDLSDP---NALTLIGHACETWGVFQVTNHGIPLSLLDDIESQTRRLFSLPAQRKLKAARSPDGVSGYGVARISS 131 (358)
T ss_pred CCCCeEeCCCH---HHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCCCCccccccccccc
Confidence 57999999753 46899999999999999999999999999999999999999999999986544 67886544332
Q ss_pred cCCCCCCCCCCceeeecC--CCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhcccCCc
Q 023505 83 LDPSSTSEGDPKESFYIG--PLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEKVGAL 160 (281)
Q Consensus 83 ~~~~~~~~~d~~E~~~~~--p~~~~~~~~~~wP~~~~~~~f~~~~~~y~~~~~~~~~~ll~~l~~~lgl~~~~~~~~~~~ 160 (281)
.+ .+.||+|.|.+. |.. ..+|.||... +.|++.+++|++.|.+++.+||++|+++||+++++|. ..+
T Consensus 132 ~~----~~~~w~e~~~~~~~p~~---~~~~~wP~~~--~~fr~~~~~Y~~~~~~L~~~ll~~la~~Lgl~~~~~~--~~~ 200 (358)
T PLN02254 132 FF----NKKMWSEGFTIMGSPLE---HARQLWPQDH--TKFCDVMEEYQKEMKKLAERLMWLMLGSLGITEEDIK--WAG 200 (358)
T ss_pred cc----CCCCceeeEEeecCccc---cchhhCCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH--HHh
Confidence 22 145899999985 221 2468999875 8999999999999999999999999999999998886 333
Q ss_pred -----CCcccceeecccCCCCCCCCCCccccccCccCCCccEEecCCCCceeEeeCCCCCCCceEEccCCCCcEEEehhh
Q 023505 161 -----DAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQVCREKFNQPRLWEDVPNIKGALIVNIGD 235 (281)
Q Consensus 161 -----~~~~~~lr~~~Yp~~~~~~~~~~~~~~~H~D~~~lTll~~~~~~GLqv~~~~~~~~~~w~~v~~~~g~~ivn~Gd 235 (281)
.+..+.||++|||||+.+ +..+|+++|||+|+||||+||.++||||+.++++ |++|+|.||++|||+||
T Consensus 201 ~~~~~~~~~~~lRl~~YPp~p~~--~~~~G~~~HtD~g~lTiL~Qd~v~GLQV~~~~~~----Wi~V~p~pgalVVNiGD 274 (358)
T PLN02254 201 PKSGSQGAQAALQLNSYPVCPDP--DRAMGLAPHTDSSLLTILYQSNTSGLQVFREGVG----WVTVPPVPGSLVVNVGD 274 (358)
T ss_pred hcccccCcceeEEEecCCCCCCc--ccccCcCCccCCCcEEEEecCCCCCceEECCCCE----EEEcccCCCCEEEEhHH
Confidence 456689999999999864 5679999999999999999999999999987644 99999999999999999
Q ss_pred hHHHHhCCcccccceeecCC-CCCeEEEEeeecCCCCCCCccCCCC
Q 023505 236 MMERWTNCLFRSTLHRVMSS-GQERYSVIICFLSHLCFPHSNAFGC 280 (281)
Q Consensus 236 ~l~~~T~G~~ks~~HRV~~~-~~~R~S~~~f~~p~~d~~~~~~~~~ 280 (281)
+||+||||+|||++|||+.+ ..+||||+||++|+.|++|.|++.+
T Consensus 275 ~lq~~SNg~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~i~pl~~l 320 (358)
T PLN02254 275 LLHILSNGRFPSVLHRAVVNKTRHRISVAYFYGPPSDVQISPLPKL 320 (358)
T ss_pred HHHHHhCCeeccccceeecCCCCCEEEEEEEecCCCCcEEeCcHHh
Confidence 99999999999999999975 5699999999999999999999753
No 6
>PLN02485 oxidoreductase
Probab=100.00 E-value=8.8e-67 Score=461.53 Aligned_cols=268 Identities=31% Similarity=0.536 Sum_probs=230.0
Q ss_pred CC-CCCCCcEEeCCCc-------------chHHHHHHHHHHHHhcceEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhh
Q 023505 1 MT-EALQLPVIDLSSP-------------DRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMK 66 (281)
Q Consensus 1 ~~-~~~~lPvIDl~~~-------------~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~ 66 (281)
|+ ....||||||+.. .+.+++++|.+||+++|||||+||||+.++++++++.+++||++|.|+|++
T Consensus 1 ~~~~~~~iPvIDl~~l~~~~~~~~~~~~~~~~~~~~~l~~Ac~~~GFf~l~nHGi~~~l~~~~~~~~~~FF~lP~e~K~~ 80 (329)
T PLN02485 1 MATDFKSIPVIDISPLVAKCDDPDMAEDPDVAEVVRQLDKACRDAGFFYVKGHGISDSLIKKVREVTHEFFELPYEEKLK 80 (329)
T ss_pred CCCCCCCCCeEechhhhccCcccccccchHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHHh
Confidence 55 3579999999721 235689999999999999999999999999999999999999999999999
Q ss_pred ccccC---CCccccccccccCCCCCCCCCCceeeecCC----CCC-----CCCCCCCCCCCCCCchHHHHHHHHHHHHHH
Q 023505 67 LARKE---HRGYTALCDEILDPSSTSEGDPKESFYIGP----LEG-----TLSSMNQWPSLEILPTWRSTMEYYHQKVLS 134 (281)
Q Consensus 67 ~~~~~---~~Gy~~~~~e~~~~~~~~~~d~~E~~~~~p----~~~-----~~~~~~~wP~~~~~~~f~~~~~~y~~~~~~ 134 (281)
+.... .+||++.+.+...+ ..|++|.|.+.. ... ....+|.||... |+|++.+++|++.|.+
T Consensus 81 ~~~~~~~~~rGY~~~g~~~~~~----~~d~~E~~~~~~~~~~~~~~~~~~~~~~~n~wP~~~--~~fr~~~~~y~~~~~~ 154 (329)
T PLN02485 81 IKMTPAAGYRGYQRIGENVTKG----KPDMHEAIDCYREFKPGKYGDLGKVMEGPNQWPENP--QEFKALMEEYIKLCTD 154 (329)
T ss_pred hcccCCCCCCCcccccccccCC----CCCcchhhhhcccCCCCcccccccccCCCCCCCCcc--HHHHHHHHHHHHHHHH
Confidence 76432 78999877654322 459999988752 110 234689999864 8999999999999999
Q ss_pred HHHHHHHHHHHHcCCChhhhcccCCc-CCcccceeecccCCCCCCC--CCCccccccCccCCCccEEecC-CCCceeEee
Q 023505 135 AGRRLIHLIALALNLNEDFFEKVGAL-DAPMAFLRLLHYPGELVSS--NQEVCGASAHSDYGMITLLATD-GVPGLQVCR 210 (281)
Q Consensus 135 ~~~~ll~~l~~~lgl~~~~~~~~~~~-~~~~~~lr~~~Yp~~~~~~--~~~~~~~~~H~D~~~lTll~~~-~~~GLqv~~ 210 (281)
++.+|+++++++||+++++|. +.+ .+..+.||++|||+++... .+..+|+++|||+|+||||+|+ .++||||+.
T Consensus 155 l~~~ll~~~a~~Lgl~~~~f~--~~~~~~~~~~lrl~~YP~~~~~~~~~~~~~g~~~HTD~g~lTlL~qd~~~~GLqV~~ 232 (329)
T PLN02485 155 LSRKILRGIALALGGSPDEFE--GKMAGDPFWVMRIIGYPGVSNLNGPPENDIGCGAHTDYGLLTLVNQDDDITALQVRN 232 (329)
T ss_pred HHHHHHHHHHHHcCCChHHhh--hhhccCccceEEEEeCCCCccccCCcccCcccccccCCCeEEEEeccCCCCeeeEEc
Confidence 999999999999999999887 443 4467789999999987531 3467899999999999999997 589999998
Q ss_pred CCCCCCCceEEccCCCCcEEEehhhhHHHHhCCcccccceeecCC-CCCeEEEEeeecCCCCCCCccCCCC
Q 023505 211 EKFNQPRLWEDVPNIKGALIVNIGDMMERWTNCLFRSTLHRVMSS-GQERYSVIICFLSHLCFPHSNAFGC 280 (281)
Q Consensus 211 ~~~~~~~~w~~v~~~~g~~ivn~Gd~l~~~T~G~~ks~~HRV~~~-~~~R~S~~~f~~p~~d~~~~~~~~~ 280 (281)
++|+ |++|+|.||++|||+||+|++||||+|||++|||+.+ +.+|||++||++|+.|++|.|+|+|
T Consensus 233 ~~g~----Wi~V~p~pg~~vVNiGD~L~~~TnG~~~St~HRVv~~~~~~R~Si~~F~~p~~d~~i~pl~~~ 299 (329)
T PLN02485 233 LSGE----WIWAIPIPGTFVCNIGDMLKIWSNGVYQSTLHRVINNSPKYRVCVAFFYETNFDAAVEPLDIC 299 (329)
T ss_pred CCCc----EEECCCCCCcEEEEhHHHHHHHHCCEeeCCCceecCCCCCCeEEEEEEecCCCCceeecchhh
Confidence 7655 9999999999999999999999999999999999985 5699999999999999999999875
No 7
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=100.00 E-value=1.3e-66 Score=462.49 Aligned_cols=262 Identities=26% Similarity=0.392 Sum_probs=225.0
Q ss_pred CCCCcEEeCCCc-----chHHHHHHHHHHHHhcceEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhccccC--CCccc
Q 023505 4 ALQLPVIDLSSP-----DRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKE--HRGYT 76 (281)
Q Consensus 4 ~~~lPvIDl~~~-----~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~--~~Gy~ 76 (281)
..+||+|||+.. .+.+++++|.+||++||||||+||||+.++++++++.++.||+||.|+|+++.... .+||.
T Consensus 35 ~~~iPvIDls~~~~~~~~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~Gy~ 114 (358)
T PLN02515 35 SDEIPVISLAGIDEVGGRRGEICRKIVEACEDWGIFQVVDHGVDANLVADMTRLARDFFALPAEEKLRFDMSGGKKGGFI 114 (358)
T ss_pred CCCCCEEEChhccCCchHHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHhhhCcCCCCccCcc
Confidence 347999999732 35678999999999999999999999999999999999999999999999976543 67886
Q ss_pred cccccccCCCCCCCCCCceeeecCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhcc
Q 023505 77 ALCDEILDPSSTSEGDPKESFYIGPLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEK 156 (281)
Q Consensus 77 ~~~~e~~~~~~~~~~d~~E~~~~~p~~~~~~~~~~wP~~~~~~~f~~~~~~y~~~~~~~~~~ll~~l~~~lgl~~~~~~~ 156 (281)
. .+.... ....||+|.|.+..........|.||+.. |.|++.+++|++.|.+++.+|+++++++||+++++|.
T Consensus 115 ~--~~~~~~--~~~~d~kE~~~~~~~~~~~~~~n~WP~~~--~~fr~~~~~y~~~~~~L~~~ll~~la~~Lgl~~~~f~- 187 (358)
T PLN02515 115 V--SSHLQG--EAVQDWREIVTYFSYPVRTRDYSRWPDKP--EGWRAVTEEYSEKLMGLACKLLEVLSEAMGLEKEALT- 187 (358)
T ss_pred c--cccccc--ccccCceeeeccccCcccccccccccccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHH-
Confidence 3 222221 12469999987641111123468999864 8999999999999999999999999999999999998
Q ss_pred cCCcCCcccceeecccCCCCCCCCCCccccccCccCCCccEEecCCCCceeEeeCCCCCCCceEEccCCCCcEEEehhhh
Q 023505 157 VGALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQVCREKFNQPRLWEDVPNIKGALIVNIGDM 236 (281)
Q Consensus 157 ~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~~~H~D~~~lTll~~~~~~GLqv~~~~~~~~~~w~~v~~~~g~~ivn~Gd~ 236 (281)
+.+....+.+|++|||+++.+ +..+|+++|||+|+||||+||+++||||+.+++ +.|++|+|.||++|||+||+
T Consensus 188 -~~~~~~~~~lrl~~YP~~~~~--~~~~G~~~HTD~g~lTlL~Qd~v~GLQV~~~~~---~~Wi~Vpp~pgalVVNiGD~ 261 (358)
T PLN02515 188 -KACVDMDQKVVVNYYPKCPQP--DLTLGLKRHTDPGTITLLLQDQVGGLQATRDGG---KTWITVQPVEGAFVVNLGDH 261 (358)
T ss_pred -HhhcCccceEEEeecCCCCCh--hhccCCCCCCCCCeEEEEecCCCCceEEEECCC---CeEEECCCCCCeEEEEccHH
Confidence 677667788999999998753 567899999999999999999999999987654 34999999999999999999
Q ss_pred HHHHhCCcccccceeecC-CCCCeEEEEeeecCCCCCCCccCC
Q 023505 237 MERWTNCLFRSTLHRVMS-SGQERYSVIICFLSHLCFPHSNAF 278 (281)
Q Consensus 237 l~~~T~G~~ks~~HRV~~-~~~~R~S~~~f~~p~~d~~~~~~~ 278 (281)
|++||||+|||++|||+. ++.+||||+||++|+.|++|.|++
T Consensus 262 L~~~TNG~~kSt~HRVv~~~~~~R~Si~~F~~P~~d~~i~Pl~ 304 (358)
T PLN02515 262 GHYLSNGRFKNADHQAVVNSNCSRLSIATFQNPAPDATVYPLK 304 (358)
T ss_pred HHHHhCCeeeeecceEECCCCCCEEEEEEEecCCCCCEEECCC
Confidence 999999999999999987 467999999999999999999986
No 8
>PLN02216 protein SRG1
Probab=100.00 E-value=8.5e-67 Score=464.37 Aligned_cols=261 Identities=29% Similarity=0.423 Sum_probs=224.4
Q ss_pred CCCcEEeCCCc----chHHHHHHHHHHHHhcceEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhccccC--CCccccc
Q 023505 5 LQLPVIDLSSP----DRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKE--HRGYTAL 78 (281)
Q Consensus 5 ~~lPvIDl~~~----~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~--~~Gy~~~ 78 (281)
.+||+|||+.. .+++++++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++.... .+||...
T Consensus 51 ~~iPvIDls~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~Gy~~~ 130 (357)
T PLN02216 51 SEIPIIDMKRLCSSTAMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKLWQRPGEIEGFGQA 130 (357)
T ss_pred CCCCeEEChhccCCccHHHHHHHHHHHHHHCcEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHHhhhcCCCCccccCcc
Confidence 47999999832 23568999999999999999999999999999999999999999999999986543 6788643
Q ss_pred cccccCCCCCCCCCCceeeecCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhcccC
Q 023505 79 CDEILDPSSTSEGDPKESFYIGPLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEKVG 158 (281)
Q Consensus 79 ~~e~~~~~~~~~~d~~E~~~~~p~~~~~~~~~~wP~~~~~~~f~~~~~~y~~~~~~~~~~ll~~l~~~lgl~~~~~~~~~ 158 (281)
... .. ....||+|.|.+.........+|.||..+ +.|++.+++|++.|.+++.+|+++|+++||+++++|. +
T Consensus 131 ~~~--~~--~~~~d~~e~~~~~~~p~~~~~~~~WP~~p--~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~--~ 202 (357)
T PLN02216 131 FVV--SE--DQKLDWADMFFLTMQPVRLRKPHLFPKLP--LPFRDTLETYSAEVKSIAKILFAKMASALEIKPEEME--K 202 (357)
T ss_pred ccc--cc--cccCCceeeeeeeccCcccccchhcccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH--H
Confidence 221 11 12469999998762222335689999864 7999999999999999999999999999999999998 6
Q ss_pred CcCC-cccceeecccCCCCCCCCCCccccccCccCCCccEEec-CCCCceeEeeCCCCCCCceEEccCCCCcEEEehhhh
Q 023505 159 ALDA-PMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLAT-DGVPGLQVCREKFNQPRLWEDVPNIKGALIVNIGDM 236 (281)
Q Consensus 159 ~~~~-~~~~lr~~~Yp~~~~~~~~~~~~~~~H~D~~~lTll~~-~~~~GLqv~~~~~~~~~~w~~v~~~~g~~ivn~Gd~ 236 (281)
.+.. ..+.||++|||||+.+ +..+|+++|||+|+||||+| ++++||||+.++. |++|+|.||++|||+||+
T Consensus 203 ~~~~~~~~~lRl~~YPp~p~~--~~~~G~~~HtD~g~lTlL~q~~~v~GLQV~~~g~-----Wi~V~p~pgalvVNiGD~ 275 (357)
T PLN02216 203 LFDDDLGQSIRMNYYPPCPQP--DQVIGLTPHSDAVGLTILLQVNEVEGLQIKKDGK-----WVSVKPLPNALVVNVGDI 275 (357)
T ss_pred HhccCchheeEEeecCCCCCc--ccccCccCcccCceEEEEEecCCCCceeEEECCE-----EEECCCCCCeEEEEcchh
Confidence 6665 4578999999999764 56789999999999999999 5799999985443 999999999999999999
Q ss_pred HHHHhCCcccccceeecC-CCCCeEEEEeeecCCCCCCCccCCCC
Q 023505 237 MERWTNCLFRSTLHRVMS-SGQERYSVIICFLSHLCFPHSNAFGC 280 (281)
Q Consensus 237 l~~~T~G~~ks~~HRV~~-~~~~R~S~~~f~~p~~d~~~~~~~~~ 280 (281)
|++||||+|||++|||+. +..+|||++||+.|+.|++|.|+|++
T Consensus 276 L~~~TNG~~kS~~HRVv~~~~~~R~Si~~F~~P~~d~~i~p~~~l 320 (357)
T PLN02216 276 LEIITNGTYRSIEHRGVVNSEKERLSVATFHNTGMGKEIGPAKSL 320 (357)
T ss_pred hHhhcCCeeeccCceeecCCCCCEEEEEEEecCCCCCeEeCcHHH
Confidence 999999999999999987 45699999999999999999999764
No 9
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=1.5e-66 Score=463.41 Aligned_cols=263 Identities=29% Similarity=0.462 Sum_probs=226.6
Q ss_pred CCCCCcEEeCCCc---c---hHHHHHHHHHHHHhcceEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhccccC--CCc
Q 023505 3 EALQLPVIDLSSP---D---RLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKE--HRG 74 (281)
Q Consensus 3 ~~~~lPvIDl~~~---~---~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~--~~G 74 (281)
+..+||+|||+.. + +..++++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++.... .+|
T Consensus 49 ~~~~IPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGi~~~l~~~~~~~~~~FF~LP~eeK~k~~~~~~~~~G 128 (361)
T PLN02758 49 APDDIPVIDFSRLVKGDNDELFSEILKLRLACEEWGFFQVINHGIELELLEEIEKVAREFFMLPLEEKQKYPMAPGTVQG 128 (361)
T ss_pred CCCCCCeEEchhhcCCChHHHHHHHHHHHHHHHhCeEEEEecCCCCHHHHHHHHHHHHHHhcCCHHHHHHhcccCCCccc
Confidence 3468999999731 2 2456899999999999999999999999999999999999999999999987543 789
Q ss_pred cccccccccCCCCCCCCCCceeeecCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhh
Q 023505 75 YTALCDEILDPSSTSEGDPKESFYIGPLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFF 154 (281)
Q Consensus 75 y~~~~~e~~~~~~~~~~d~~E~~~~~p~~~~~~~~~~wP~~~~~~~f~~~~~~y~~~~~~~~~~ll~~l~~~lgl~~~~~ 154 (281)
|....... .....||+|.|.++........+|.||..+ +.|++.+++|++.|.+++.+|+++|+++||+++++|
T Consensus 129 Y~~~~~~~----~~~~~d~~e~~~~~~~p~~~~~~~~WP~~~--~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f 202 (361)
T PLN02758 129 YGQAFVFS----EDQKLDWCNMFALGVEPHFIRNPKLWPTKP--ARFSETLEVYSREIRELCQRLLKYIAMTLGLKEDRF 202 (361)
T ss_pred cCcccccc----cccccCeeEEEEeeccCccccccccCcccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhh
Confidence 96543221 112469999998862111224579999864 899999999999999999999999999999999999
Q ss_pred cccCCcCCcccceeecccCCCCCCCCCCccccccCccCCCccEEecCC--CCceeEeeCCCCCCCceEEccCCCCcEEEe
Q 023505 155 EKVGALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDG--VPGLQVCREKFNQPRLWEDVPNIKGALIVN 232 (281)
Q Consensus 155 ~~~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~~~H~D~~~lTll~~~~--~~GLqv~~~~~~~~~~w~~v~~~~g~~ivn 232 (281)
. +.+....+.||++|||+|+.+ +..+|+++|||+|+||||+|+. ++||||+.++. |++|+|.||++|||
T Consensus 203 ~--~~~~~~~~~lR~~~YP~~~~~--~~~~g~~~HtD~g~lTlL~qd~~~v~GLQV~~~g~-----Wi~V~p~pgalVVN 273 (361)
T PLN02758 203 E--EMFGEAVQAVRMNYYPPCSRP--DLVLGLSPHSDGSALTVLQQGKGSCVGLQILKDNT-----WVPVHPVPNALVIN 273 (361)
T ss_pred H--HHhcCccceeeeecCCCCCCc--ccccCccCccCCceeEEEEeCCCCCCCeeeeeCCE-----EEeCCCCCCeEEEE
Confidence 8 777778889999999999764 5678999999999999999984 78999987644 99999999999999
Q ss_pred hhhhHHHHhCCcccccceeecCC-CCCeEEEEeeecCCCCCCCccCCCC
Q 023505 233 IGDMMERWTNCLFRSTLHRVMSS-GQERYSVIICFLSHLCFPHSNAFGC 280 (281)
Q Consensus 233 ~Gd~l~~~T~G~~ks~~HRV~~~-~~~R~S~~~f~~p~~d~~~~~~~~~ 280 (281)
+||+|++||||+|||++|||+.+ +.+|||++||++|+.|++|.|+|+|
T Consensus 274 iGD~L~~~SNG~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~i~pl~el 322 (361)
T PLN02758 274 IGDTLEVLTNGKYKSVEHRAVTNKEKDRLSIVTFYAPSYEVELGPMPEL 322 (361)
T ss_pred ccchhhhhcCCeeecccceeecCCCCCEEEEEEEecCCCCCeEeCCHHH
Confidence 99999999999999999999975 5689999999999999999999863
No 10
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=3.2e-66 Score=459.80 Aligned_cols=261 Identities=34% Similarity=0.518 Sum_probs=226.3
Q ss_pred CCCCcEEeCCC---cchHHHHHHHHHHHHhcceEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhccccC--CCccccc
Q 023505 4 ALQLPVIDLSS---PDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKE--HRGYTAL 78 (281)
Q Consensus 4 ~~~lPvIDl~~---~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~--~~Gy~~~ 78 (281)
..+||+|||+. .++.+++++|.+||+++|||||+||||+.++++++++.+++||++|.|+|+++.... .+||...
T Consensus 24 ~~~iPvIDls~~~~~~~~~~~~~l~~Ac~~~GFf~v~nHGi~~~l~~~~~~~~~~FF~LP~eeK~~~~~~~~~~~GY~~~ 103 (345)
T PLN02750 24 DEEIPVIDLSVSTSHDKTEVASKIGEACKKWGFFQVINHGVPSELRQRVEKVAKEFFDQTTEEKRKVKRDEVNPMGYHDS 103 (345)
T ss_pred CCCCCeEECCCCCcccHHHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCCCCccCcCcc
Confidence 46899999983 346778899999999999999999999999999999999999999999999986543 5799632
Q ss_pred cccccCCCCCCCCCCceeeecCCCC--------C----C-CCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023505 79 CDEILDPSSTSEGDPKESFYIGPLE--------G----T-LSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIAL 145 (281)
Q Consensus 79 ~~e~~~~~~~~~~d~~E~~~~~p~~--------~----~-~~~~~~wP~~~~~~~f~~~~~~y~~~~~~~~~~ll~~l~~ 145 (281)
+.. ....|++|.|.+.... . . ...+|.||..+ ++|++.+.+|++.|.+++.+|+++|++
T Consensus 104 --~~~----~~~~d~kE~~~~~~~~~~~~p~~~~~~~~~~~~~~n~wP~~~--~~fr~~~~~y~~~~~~l~~~ll~~la~ 175 (345)
T PLN02750 104 --EHT----KNIRDWKEVFDFLVQDPTLVPASPDPEDTELRKLTNQWPQNP--SHFRELCQEYARQVEKLAFKLLELISL 175 (345)
T ss_pred --ccc----ccCCCceeEEEEeecccccccccccccccccccccccCCCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1145999999886211 0 0 11369999864 899999999999999999999999999
Q ss_pred HcCCChhhhcccCCcCCcccceeecccCCCCCCCCCCccccccCccCCCccEEecCCCCceeEee-CCCCCCCceEEccC
Q 023505 146 ALNLNEDFFEKVGALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQVCR-EKFNQPRLWEDVPN 224 (281)
Q Consensus 146 ~lgl~~~~~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~~~H~D~~~lTll~~~~~~GLqv~~-~~~~~~~~w~~v~~ 224 (281)
+||+++++|. +.+.+..+.||++||||++.+ +..+|+++|||+|+||||+||+++||||+. .+| +|++|+|
T Consensus 176 ~Lgl~~~~f~--~~~~~~~~~lR~~~YPp~~~~--~~~~g~~~HtD~g~lTlL~qd~v~GLQV~~~~~g----~Wi~V~p 247 (345)
T PLN02750 176 SLGLPADRLN--GYFKDQISFARFNHYPPCPAP--HLALGVGRHKDGGALTVLAQDDVGGLQISRRSDG----EWIPVKP 247 (345)
T ss_pred HcCCCHHHHH--HHhcCcceEEEEEecCCCCCc--ccccCcCCCCCCCeEEEEecCCCCceEEeecCCC----eEEEccC
Confidence 9999999999 777778899999999998753 567899999999999999999999999986 343 4999999
Q ss_pred CCCcEEEehhhhHHHHhCCcccccceeecCC-CCCeEEEEeeecCCCCCCCccCCCC
Q 023505 225 IKGALIVNIGDMMERWTNCLFRSTLHRVMSS-GQERYSVIICFLSHLCFPHSNAFGC 280 (281)
Q Consensus 225 ~~g~~ivn~Gd~l~~~T~G~~ks~~HRV~~~-~~~R~S~~~f~~p~~d~~~~~~~~~ 280 (281)
.||++|||+||+|++||||+|||++|||+.+ +.+||||+||++|+.|++|.|+|.|
T Consensus 248 ~pg~~vVNiGD~L~~~Tng~~~St~HRVv~~~~~~R~Si~~F~~P~~d~~i~pl~~~ 304 (345)
T PLN02750 248 IPDAFIINIGNCMQVWTNDLYWSAEHRVVVNSQKERFSIPFFFFPSHYVNIKPLDEL 304 (345)
T ss_pred CCCeEEEEhHHHHHHHhCCeeecccceeccCCCCCEEEEEEeecCCCCCeecCcHHh
Confidence 9999999999999999999999999999974 6799999999999999999999864
No 11
>PLN02276 gibberellin 20-oxidase
Probab=100.00 E-value=4.4e-66 Score=460.85 Aligned_cols=261 Identities=26% Similarity=0.391 Sum_probs=226.9
Q ss_pred CCCcEEeCCCc------chHHHHHHHHHHHHhcceEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhccccC--CCccc
Q 023505 5 LQLPVIDLSSP------DRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKE--HRGYT 76 (281)
Q Consensus 5 ~~lPvIDl~~~------~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~--~~Gy~ 76 (281)
.+||+|||+.. .+..++++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++.... .+||.
T Consensus 39 ~~iPvIDls~~~~~~~~~~~~~~~~l~~Ac~~~GFF~l~nHGI~~~l~~~~~~~~~~FF~LP~eeK~k~~~~~~~~~GY~ 118 (361)
T PLN02276 39 LAVPLIDLGGFLSGDEAATAEAARLVREACLKHGFFQVVNHGVDAALIRAAHEYMDAFFKLPLSEKQRAQRKPGESCGYA 118 (361)
T ss_pred CCCCeEEChhhcCCChHHHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCCCCccccC
Confidence 58999999831 24568899999999999999999999999999999999999999999999976543 78998
Q ss_pred cccccccCCCCCCCCCCceeeecCCC--CC-----CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 023505 77 ALCDEILDPSSTSEGDPKESFYIGPL--EG-----TLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNL 149 (281)
Q Consensus 77 ~~~~e~~~~~~~~~~d~~E~~~~~p~--~~-----~~~~~~~wP~~~~~~~f~~~~~~y~~~~~~~~~~ll~~l~~~lgl 149 (281)
+.+.+.... ..||+|.|.++.. .. ....+|.||.. +++|++.+++|+..|.+++.+||++|+++||+
T Consensus 119 ~~~~~~~~~----~~d~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl 192 (361)
T PLN02276 119 SSHTGRFSS----KLPWKETLSFGYHADGGSSPVVVDYFKSVLGED--FEQFGKVYQEYCEAMKTLSLKIMELLGISLGV 192 (361)
T ss_pred ccCccccCC----CCCeeeeEEEeccCcccccccchhcccccCCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 876654432 3589999999721 11 01234678754 47899999999999999999999999999999
Q ss_pred ChhhhcccCCcCCcccceeecccCCCCCCCCCCccccccCccCCCccEEecCCCCceeEeeCCCCCCCceEEccCCCCcE
Q 023505 150 NEDFFEKVGALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQVCREKFNQPRLWEDVPNIKGAL 229 (281)
Q Consensus 150 ~~~~~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~~~H~D~~~lTll~~~~~~GLqv~~~~~~~~~~w~~v~~~~g~~ 229 (281)
++++|. +.+....+.||++|||+++.+ +..+|+++|||+|+||||+||.++||||+.++. |++|+|.||++
T Consensus 193 ~~~~f~--~~~~~~~~~lrl~~YP~~~~~--~~~~g~~~HTD~g~lTlL~Qd~v~GLQV~~~g~-----Wi~V~p~pgal 263 (361)
T PLN02276 193 DRGYYR--KFFEDGDSIMRCNYYPPCQEP--ELTLGTGPHCDPTSLTILHQDQVGGLQVFVDNK-----WRSVRPRPGAL 263 (361)
T ss_pred CHHHHH--HHhcCccceeeeEeCCCCCCc--ccccCCccccCCceeEEEEecCCCceEEEECCE-----EEEcCCCCCeE
Confidence 999999 777778899999999999664 567899999999999999999999999996443 99999999999
Q ss_pred EEehhhhHHHHhCCcccccceeecCC-CCCeEEEEeeecCCCCCCCccCCCC
Q 023505 230 IVNIGDMMERWTNCLFRSTLHRVMSS-GQERYSVIICFLSHLCFPHSNAFGC 280 (281)
Q Consensus 230 ivn~Gd~l~~~T~G~~ks~~HRV~~~-~~~R~S~~~f~~p~~d~~~~~~~~~ 280 (281)
|||+||+|++||||+|||++|||+.+ ..+|||++||++|+.|++|.|+|.|
T Consensus 264 VVNiGD~L~~~TNG~~kSt~HRVv~~~~~~R~Sia~F~~P~~d~~i~pl~~~ 315 (361)
T PLN02276 264 VVNIGDTFMALSNGRYKSCLHRAVVNSERERRSLAFFLCPKEDKVVRPPQEL 315 (361)
T ss_pred EEEcHHHHHHHhCCccccccceeecCCCCCEEEEEEEecCCCCCEEeCChHh
Confidence 99999999999999999999999975 5699999999999999999998764
No 12
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=1e-65 Score=456.00 Aligned_cols=259 Identities=27% Similarity=0.404 Sum_probs=221.6
Q ss_pred CCCCcEEeCCC---cchHHHHHHHHHHHHhcceEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhccccC----CCccc
Q 023505 4 ALQLPVIDLSS---PDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKE----HRGYT 76 (281)
Q Consensus 4 ~~~lPvIDl~~---~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~----~~Gy~ 76 (281)
..+||+|||+. .++.+++++|.+||+++|||||+||||+.++++++++.+++||++|.|+|+++.... .++|.
T Consensus 39 ~~~iPvIDls~~~~~~~~~~~~~l~~A~~~~GFf~v~nHGI~~~l~~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~~~~~ 118 (348)
T PLN02912 39 GDSIPLIDLRDLHGPNRADIINQFAHACSSYGFFQIKNHGVPEETIKKMMNVAREFFHQSESERVKHYSADTKKTTRLST 118 (348)
T ss_pred CCCCCeEECcccCCcCHHHHHHHHHHHHHHCCEEEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHhHhhcCCCCcccccc
Confidence 35799999983 346778999999999999999999999999999999999999999999999954322 33443
Q ss_pred cccccccCCCCCCCCCCceeeecCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhcc
Q 023505 77 ALCDEILDPSSTSEGDPKESFYIGPLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEK 156 (281)
Q Consensus 77 ~~~~e~~~~~~~~~~d~~E~~~~~p~~~~~~~~~~wP~~~~~~~f~~~~~~y~~~~~~~~~~ll~~l~~~lgl~~~~~~~ 156 (281)
.... . .....+|+|.+.+.+... ...+|.||..+ ++|++.+.+|++.|.+++.+|+++|+++||+++++|.
T Consensus 119 ~~~~---~--~~~~~~~~e~~~~~~~~~-~~~~n~wP~~~--~~fr~~~~~y~~~~~~l~~~il~~la~~Lgl~~~~f~- 189 (348)
T PLN02912 119 SFNV---S--KEKVSNWRDFLRLHCYPI-EDFIEEWPSTP--ISFREVTAEYATSVRALVLTLLEAISESLGLEKDRVS- 189 (348)
T ss_pred cccc---c--ccccCCchheEEEeecCc-ccccccCcchh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-
Confidence 3211 1 111458999988762211 12468999864 8999999999999999999999999999999999998
Q ss_pred cCCcCCcccceeecccCCCCCCCCCCccccccCccCCCccEEecCCCCceeEeeCCCCCCCceEEccCCCCcEEEehhhh
Q 023505 157 VGALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQVCREKFNQPRLWEDVPNIKGALIVNIGDM 236 (281)
Q Consensus 157 ~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~~~H~D~~~lTll~~~~~~GLqv~~~~~~~~~~w~~v~~~~g~~ivn~Gd~ 236 (281)
+.+....+.||++||||++.+ +..+|+++|||+|+||||+||+++||||+.+++ |++|+|.||++|||+||+
T Consensus 190 -~~~~~~~~~lrl~~YPp~~~~--~~~~G~~~HtD~g~lTlL~Qd~v~GLQV~~~g~-----Wi~V~p~pgalvVNiGD~ 261 (348)
T PLN02912 190 -NTLGKHGQHMAINYYPPCPQP--ELTYGLPGHKDANLITVLLQDEVSGLQVFKDGK-----WIAVNPIPNTFIVNLGDQ 261 (348)
T ss_pred -HHhcCccceeeeeecCCCCCh--hhcCCcCCCcCCCceEEEEECCCCceEEEECCc-----EEECCCcCCeEEEEcCHH
Confidence 777777889999999999764 457899999999999999999999999995444 999999999999999999
Q ss_pred HHHHhCCcccccceeecC-CCCCeEEEEeeecCCCCCCCccCCC
Q 023505 237 MERWTNCLFRSTLHRVMS-SGQERYSVIICFLSHLCFPHSNAFG 279 (281)
Q Consensus 237 l~~~T~G~~ks~~HRV~~-~~~~R~S~~~f~~p~~d~~~~~~~~ 279 (281)
|++||||+|||++|||+. +..+|||++||++|+.|+.|.|+|.
T Consensus 262 L~~~TNG~~kSt~HRVv~~~~~~R~Sia~F~~p~~d~~i~pl~~ 305 (348)
T PLN02912 262 MQVISNDKYKSVLHRAVVNTDKERISIPTFYCPSEDAVIGPAQE 305 (348)
T ss_pred HHHHhCCEEEcccccccCCCCCCEEEEEEEecCCCCCeEeCCHH
Confidence 999999999999999987 4668999999999999999999875
No 13
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=1.9e-65 Score=454.26 Aligned_cols=262 Identities=26% Similarity=0.418 Sum_probs=221.4
Q ss_pred CCCCcEEeCCC-----cchHHHHHHHHHHHHhcceEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhccccC--CCccc
Q 023505 4 ALQLPVIDLSS-----PDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKE--HRGYT 76 (281)
Q Consensus 4 ~~~lPvIDl~~-----~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~--~~Gy~ 76 (281)
.++||+|||+. ......+++|.+||+++|||||+||||+.++++++++.+++||++|.|+|+++.... ++||.
T Consensus 42 ~~~IPvIDls~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~LP~eeK~~~~~~~~~~~GY~ 121 (348)
T PLN00417 42 EMDIPAIDLSLLLSSSDDGREELSKLHSALSTWGVVQVMNHGITEAFLDKIYKLTKQFFALPTEEKQKCAREIGSIQGYG 121 (348)
T ss_pred CCCCCeEEChhhcCCCchHHHHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHHhhcCCCCccccc
Confidence 45899999982 123445789999999999999999999999999999999999999999999987653 78996
Q ss_pred cccccccCCCCCCCCCCceeeecCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhcc
Q 023505 77 ALCDEILDPSSTSEGDPKESFYIGPLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEK 156 (281)
Q Consensus 77 ~~~~e~~~~~~~~~~d~~E~~~~~p~~~~~~~~~~wP~~~~~~~f~~~~~~y~~~~~~~~~~ll~~l~~~lgl~~~~~~~ 156 (281)
.... ... ....|++|.+++.........+|.||..+ +.|++.+.+|++.|.+++.+|+++|+++||+++++|.
T Consensus 122 ~~~~--~~~--~~~~d~~e~~~~~~~p~~~~~~n~wP~~~--~~fr~~~~~y~~~~~~l~~~ll~~la~~LGl~~~~f~- 194 (348)
T PLN00417 122 NDMI--LSD--DQVLDWIDRLYLTTYPEDQRQLKFWPQVP--VGFRETLHEYTMKQRLVIEKFFKAMARSLELEENCFL- 194 (348)
T ss_pred cccc--ccc--CCCcCccceeecccCCccccccccccccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-
Confidence 4211 111 12458899887752111123468999864 8999999999999999999999999999999999998
Q ss_pred cCCcCC-cccceeecccCCCCCCCCCCccccccCccCCCccEEecC-CCCceeEeeCCCCCCCceEEccCCCCcEEEehh
Q 023505 157 VGALDA-PMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATD-GVPGLQVCREKFNQPRLWEDVPNIKGALIVNIG 234 (281)
Q Consensus 157 ~~~~~~-~~~~lr~~~Yp~~~~~~~~~~~~~~~H~D~~~lTll~~~-~~~GLqv~~~~~~~~~~w~~v~~~~g~~ivn~G 234 (281)
+.+.. ..+.||++||||++.+ +..+|+++|||+|+||||+|+ .++||||+.++. |++|+|.||++|||+|
T Consensus 195 -~~~~~~~~~~lRl~~YPp~~~~--~~~~g~~~HTD~g~lTlL~qd~~v~GLQV~~~g~-----Wi~V~p~pg~lVVNiG 266 (348)
T PLN00417 195 -EMYGENATMDTRFNMYPPCPRP--DKVIGVKPHADGSAFTLLLPDKDVEGLQFLKDGK-----WYKAPIVPDTILINVG 266 (348)
T ss_pred -HHhccCccceeeeeecCCCCCc--ccccCCcCccCCCceEEEEecCCCCceeEeECCe-----EEECCCCCCcEEEEcC
Confidence 55554 3467999999999764 557899999999999999996 699999985433 9999999999999999
Q ss_pred hhHHHHhCCcccccceeecCC-CCCeEEEEeeecCCCCCCCccCCCC
Q 023505 235 DMMERWTNCLFRSTLHRVMSS-GQERYSVIICFLSHLCFPHSNAFGC 280 (281)
Q Consensus 235 d~l~~~T~G~~ks~~HRV~~~-~~~R~S~~~f~~p~~d~~~~~~~~~ 280 (281)
|+|++||||+|||++|||+.+ ..+||||+||++|+.|++|.|+|+|
T Consensus 267 D~Le~~Tng~~kSt~HRVv~~~~~~R~Si~fF~~P~~d~~i~pl~~~ 313 (348)
T PLN00417 267 DQMEIMSNGIYKSPVHRVVTNREKERISVATFCIPGADKEIQPVDGL 313 (348)
T ss_pred hHHHHHhCCeecccceEEecCCCCCEEEEEEEecCCCCceecCchHh
Confidence 999999999999999999985 5699999999999999999999875
No 14
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=100.00 E-value=9.4e-66 Score=451.55 Aligned_cols=260 Identities=28% Similarity=0.477 Sum_probs=224.1
Q ss_pred CCCCCCCcEEeCCC---cchHHHHHHHHHHHHhcceEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhccccCCCcccc
Q 023505 1 MTEALQLPVIDLSS---PDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKEHRGYTA 77 (281)
Q Consensus 1 ~~~~~~lPvIDl~~---~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~Gy~~ 77 (281)
|....+||+|||+. .++.+++++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++... .+||.+
T Consensus 1 ~~~~~~iPvIDls~~~~~~~~~~~~~l~~A~~~~GFF~v~nHGI~~~l~~~~~~~~~~fF~LP~e~K~~~~~~-~~gy~~ 79 (321)
T PLN02299 1 MAKMESFPVIDMEKLNGEERAATMELIKDACENWGFFELVNHGISHELMDEVEKMTKEHYKKCMEQRFKEMVA-SKGLEG 79 (321)
T ss_pred CCCCCCCCEEECcCCCcccHHHHHHHHHHHHHhcCEEEEECCCCCHHHHHHHHHHHHHHhCCCHHHHHhcccC-CCCccc
Confidence 77889999999983 34567899999999999999999999999999999999999999999999996543 578876
Q ss_pred ccccccCCCCCCCCCCceeeecCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhccc
Q 023505 78 LCDEILDPSSTSEGDPKESFYIGPLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEKV 157 (281)
Q Consensus 78 ~~~e~~~~~~~~~~d~~E~~~~~p~~~~~~~~~~wP~~~~~~~f~~~~~~y~~~~~~~~~~ll~~l~~~lgl~~~~~~~~ 157 (281)
...+. ...||+|.|.+.... ....+.||..+ +.|++.+.+|++.|.+++.+|+++|+++||+++++|.
T Consensus 80 ~~~~~------~~~d~ke~~~~~~~~--~~~~~~wP~~~--~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~-- 147 (321)
T PLN02299 80 VQTEV------EDLDWESTFFLRHLP--ESNLADIPDLD--DEYRKVMKDFALELEKLAEELLDLLCENLGLEKGYLK-- 147 (321)
T ss_pred ccccC------CCcCHHHHcccccCC--ccccccCcccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH--
Confidence 54332 145899999886211 12357799864 8999999999999999999999999999999999997
Q ss_pred CCcC---CcccceeecccCCCCCCCCCCccccccCccCCCccEEecC-CCCceeEeeCCCCCCCceEEccCCCCcEEEeh
Q 023505 158 GALD---APMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATD-GVPGLQVCREKFNQPRLWEDVPNIKGALIVNI 233 (281)
Q Consensus 158 ~~~~---~~~~~lr~~~Yp~~~~~~~~~~~~~~~H~D~~~lTll~~~-~~~GLqv~~~~~~~~~~w~~v~~~~g~~ivn~ 233 (281)
+.+. .....+|+++|||++.+ +...|+++|||+|+||||+|+ .++||||+.+ ++ |++|+|.||++|||+
T Consensus 148 ~~~~~~~~~~~~lRl~~YPp~~~~--~~~~G~~~HTD~g~lTlL~qd~~v~GLQV~~~-g~----Wi~V~p~pg~lvVNi 220 (321)
T PLN02299 148 KAFHGSKGPTFGTKVSNYPPCPKP--DLVKGLRAHTDAGGIILLFQDDKVSGLQLLKD-GE----WVDVPPMRHSIVVNL 220 (321)
T ss_pred HHhcCCCCccceeeeEecCCCCCc--ccccCccCccCCCeEEEEEecCCCCCcCcccC-Ce----EEECCCCCCeEEEEe
Confidence 5553 24568999999999764 446789999999999999996 5999999854 33 999999999999999
Q ss_pred hhhHHHHhCCcccccceeecCC-CCCeEEEEeeecCCCCCCCccCCCC
Q 023505 234 GDMMERWTNCLFRSTLHRVMSS-GQERYSVIICFLSHLCFPHSNAFGC 280 (281)
Q Consensus 234 Gd~l~~~T~G~~ks~~HRV~~~-~~~R~S~~~f~~p~~d~~~~~~~~~ 280 (281)
||+|++||||+|||+.|||+.+ ..+||||+||++|+.|++|.|+|+|
T Consensus 221 GD~l~~~Tng~~kS~~HRVv~~~~~~R~Si~~F~~p~~d~~i~pl~~~ 268 (321)
T PLN02299 221 GDQLEVITNGKYKSVMHRVVAQTDGNRMSIASFYNPGSDAVIYPAPAL 268 (321)
T ss_pred CHHHHHHhCCceecccceeecCCCCCEEEEEEEecCCCCceEeCchHh
Confidence 9999999999999999999985 4589999999999999999999864
No 15
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=1.6e-65 Score=453.90 Aligned_cols=258 Identities=31% Similarity=0.503 Sum_probs=222.5
Q ss_pred CCCCcEEeCCCcchHHHHHHHHHHHHhcceEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhccccC----CCcccccc
Q 023505 4 ALQLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKE----HRGYTALC 79 (281)
Q Consensus 4 ~~~lPvIDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~----~~Gy~~~~ 79 (281)
..+||+|||+..++.+++++|.+||+++|||||+||||+.++++++++.+++||++|.|+|+++.... .++|...+
T Consensus 35 ~~~iPvIDls~~~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~l~~~~~~~~~~fF~LP~e~K~~~~~~~~~~~~~~~~~~~ 114 (337)
T PLN02639 35 CENVPVIDLGSPDRAQVVQQIGDACRRYGFFQVINHGVSAELVEKMLAVAHEFFRLPVEEKMKLYSDDPTKTMRLSTSFN 114 (337)
T ss_pred CCCCCeEECCCccHHHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHhhhhccCCCCccccccccc
Confidence 45799999997778889999999999999999999999999999999999999999999999975432 23333222
Q ss_pred ccccCCCCCCCCCCceeeecC--CCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhccc
Q 023505 80 DEILDPSSTSEGDPKESFYIG--PLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEKV 157 (281)
Q Consensus 80 ~e~~~~~~~~~~d~~E~~~~~--p~~~~~~~~~~wP~~~~~~~f~~~~~~y~~~~~~~~~~ll~~l~~~lgl~~~~~~~~ 157 (281)
.. .....+|+|.+.+. |.. ..+|.||..+ |.|++.+++|++.|.+++.+|+++|+++||+++++|.
T Consensus 115 ~~-----~~~~~~~~e~~~~~~~p~~---~~~n~wP~~~--~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~-- 182 (337)
T PLN02639 115 VR-----KEKVHNWRDYLRLHCYPLD---KYVPEWPSNP--PSFKEIVSTYCREVRELGFRLQEAISESLGLEKDYIK-- 182 (337)
T ss_pred cc-----cCcccCchheEEeeecCCc---ccchhCcccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH--
Confidence 11 11135889988775 221 2368899864 8999999999999999999999999999999999998
Q ss_pred CCcCCcccceeecccCCCCCCCCCCccccccCccCCCccEEecC-CCCceeEeeCCCCCCCceEEccCCCCcEEEehhhh
Q 023505 158 GALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATD-GVPGLQVCREKFNQPRLWEDVPNIKGALIVNIGDM 236 (281)
Q Consensus 158 ~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~~~H~D~~~lTll~~~-~~~GLqv~~~~~~~~~~w~~v~~~~g~~ivn~Gd~ 236 (281)
+.+....+.+|++|||+++.+ +..+|+++|||+|+||||+|+ .++||||+.++. |++|+|.||++|||+||+
T Consensus 183 ~~~~~~~~~lrl~~YP~~~~~--~~~~g~~~HTD~g~lTlL~qd~~v~GLQV~~~g~-----Wi~V~p~pg~lVVNiGD~ 255 (337)
T PLN02639 183 NVLGEQGQHMAVNYYPPCPEP--ELTYGLPAHTDPNALTILLQDQQVAGLQVLKDGK-----WVAVNPHPGAFVINIGDQ 255 (337)
T ss_pred HHhCCCccEEEEEcCCCCCCc--ccccCCCCCcCCCceEEEEecCCcCceEeecCCe-----EEeccCCCCeEEEechhH
Confidence 777777889999999999764 567899999999999999998 499999985433 999999999999999999
Q ss_pred HHHHhCCcccccceeecC-CCCCeEEEEeeecCCCCCCCccCCCC
Q 023505 237 MERWTNCLFRSTLHRVMS-SGQERYSVIICFLSHLCFPHSNAFGC 280 (281)
Q Consensus 237 l~~~T~G~~ks~~HRV~~-~~~~R~S~~~f~~p~~d~~~~~~~~~ 280 (281)
|++||||+|||++|||+. ++.+|||++||++|+.|++|.|+|.|
T Consensus 256 L~~~TNG~~kSt~HRVv~~~~~~R~Sia~F~~p~~d~~i~pl~~~ 300 (337)
T PLN02639 256 LQALSNGRYKSVWHRAVVNTDKERMSVASFLCPCDDAVISPAKKL 300 (337)
T ss_pred HHHHhCCeeeccCcccccCCCCCEEEEEEEecCCCCceEeCchHH
Confidence 999999999999999987 46699999999999999999999764
No 16
>PLN02704 flavonol synthase
Probab=100.00 E-value=1.8e-65 Score=453.37 Aligned_cols=261 Identities=29% Similarity=0.441 Sum_probs=223.3
Q ss_pred CCCCCcEEeCCCcchHHHHHHHHHHHHhcceEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhccccC----CCccccc
Q 023505 3 EALQLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKE----HRGYTAL 78 (281)
Q Consensus 3 ~~~~lPvIDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~----~~Gy~~~ 78 (281)
+..+||+|||+..++.+++++|.+||+++|||||+||||+.++++++++.+++||++|.|+|+++.... ++||...
T Consensus 39 ~~~~iPvIDls~~~~~~~~~~l~~Ac~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~LP~e~K~~~~~~~~~~~~~Gy~~~ 118 (335)
T PLN02704 39 VDPQVPTIDLSDPDEEKLTRLIAEASKEWGMFQIVNHGIPSEVISKLQKVGKEFFELPQEEKEVYAKPPDSKSIEGYGTK 118 (335)
T ss_pred cCCCCCeEECCCccHHHHHHHHHHHHHHcCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHHhhccCCCccccccccc
Confidence 346799999997767778999999999999999999999999999999999999999999999986542 5788654
Q ss_pred cccccCCCCCCCCCCceeeecC--CCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhcc
Q 023505 79 CDEILDPSSTSEGDPKESFYIG--PLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEK 156 (281)
Q Consensus 79 ~~e~~~~~~~~~~d~~E~~~~~--p~~~~~~~~~~wP~~~~~~~f~~~~~~y~~~~~~~~~~ll~~l~~~lgl~~~~~~~ 156 (281)
..+..+. ..+++|.+... |.. ....|.||... |.|++.+.+|++.|.+++.+|+++|+++||+++++|.
T Consensus 119 ~~~~~~~----~~~~~d~~~~~~~p~~--~~~~n~wP~~~--p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~- 189 (335)
T PLN02704 119 LQKEPEG----KKAWVDHLFHRIWPPS--AINYQFWPKNP--PSYREVNEEYAKYLRGVADKLFKTLSLGLGLEEDELK- 189 (335)
T ss_pred ccccccC----cccceeeeEeeecCCc--ccchhhCcccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-
Confidence 3332221 34677766432 221 12358999864 8999999999999999999999999999999999998
Q ss_pred cCCcCC--cccceeecccCCCCCCCCCCccccccCccCCCccEEecCCCCceeEeeCCCCCCCceEEccCCCCcEEEehh
Q 023505 157 VGALDA--PMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQVCREKFNQPRLWEDVPNIKGALIVNIG 234 (281)
Q Consensus 157 ~~~~~~--~~~~lr~~~Yp~~~~~~~~~~~~~~~H~D~~~lTll~~~~~~GLqv~~~~~~~~~~w~~v~~~~g~~ivn~G 234 (281)
+.+.. ..+.+|++|||+++.+ +..+|+++|||+|+||||+|+.++||||+.+++ |++|+|.||++|||+|
T Consensus 190 -~~~~~~~~~~~lrl~~YP~~~~~--~~~~g~~~HtD~g~lTlL~qd~v~GLQV~~~g~-----Wi~V~p~pg~lvVNvG 261 (335)
T PLN02704 190 -EAVGGEELEYLLKINYYPPCPRP--DLALGVVAHTDMSAITILVPNEVQGLQVFRDDH-----WFDVKYIPNALVIHIG 261 (335)
T ss_pred -HHhcCCchhhhhhhhcCCCCCCc--ccccCccCccCCcceEEEecCCCCceeEeECCE-----EEeCCCCCCeEEEEec
Confidence 65543 3468999999998754 567899999999999999999999999986544 9999999999999999
Q ss_pred hhHHHHhCCcccccceeecCC-CCCeEEEEeeecCCCCCCCccCCCC
Q 023505 235 DMMERWTNCLFRSTLHRVMSS-GQERYSVIICFLSHLCFPHSNAFGC 280 (281)
Q Consensus 235 d~l~~~T~G~~ks~~HRV~~~-~~~R~S~~~f~~p~~d~~~~~~~~~ 280 (281)
|+|++||||+|||++|||+.+ ..+||||+||++|+.|++|.|+|.|
T Consensus 262 D~L~~~TNg~~kSt~HRVv~~~~~~R~Si~~F~~p~~d~~i~pl~~~ 308 (335)
T PLN02704 262 DQIEILSNGKYKSVLHRTTVNKEKTRMSWPVFLEPPSELAVGPLPKL 308 (335)
T ss_pred hHHHHHhCCeeecccceeecCCCCCeEEEEEEecCCCCceEeCChHh
Confidence 999999999999999999985 5699999999999999999999864
No 17
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=100.00 E-value=2.3e-65 Score=456.43 Aligned_cols=262 Identities=35% Similarity=0.546 Sum_probs=224.5
Q ss_pred CCCCCcEEeCCCc---c---hHHHHHHHHHHHHhcceEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhccccC--CCc
Q 023505 3 EALQLPVIDLSSP---D---RLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKE--HRG 74 (281)
Q Consensus 3 ~~~~lPvIDl~~~---~---~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~--~~G 74 (281)
..++||+|||+.. + +..++++|.+||++||||||+||||+.++++++++.+++||++|.|+|+++.... ++|
T Consensus 48 ~~~~iPvIDls~l~~~~~~~r~~~~~~l~~Ac~~~GFF~l~nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~G 127 (362)
T PLN02393 48 AEINIPVIDLSSLFSDDARLRDATLRAISEACREWGFFQVVNHGVRPELMDRAREAWREFFHLPLEVKQRYANSPATYEG 127 (362)
T ss_pred cCCCCCeEECccccCCChHHHHHHHHHHHHHHHHCcEEEEEeCCCCHHHHHHHHHHHHHHHcCCHHHHHhhhcccCcccc
Confidence 3468999999832 2 4778999999999999999999999999999999999999999999999987543 789
Q ss_pred cc-cccccccCCCCCCCCCCceeeecCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhh
Q 023505 75 YT-ALCDEILDPSSTSEGDPKESFYIGPLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDF 153 (281)
Q Consensus 75 y~-~~~~e~~~~~~~~~~d~~E~~~~~p~~~~~~~~~~wP~~~~~~~f~~~~~~y~~~~~~~~~~ll~~l~~~lgl~~~~ 153 (281)
|. ..+.+. ....||+|.|.+.........+|.||..+ ++|++.+.+|++.|.+++.+||++++++||+++++
T Consensus 128 y~~~~~~~~-----~~~~d~~e~~~~~~~~~~~~~~n~wP~~~--~~fr~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~ 200 (362)
T PLN02393 128 YGSRLGVEK-----GAILDWSDYYFLHYLPSSLKDPNKWPSLP--PSCRELIEEYGEEVVKLCGRLMKVLSVNLGLEEDR 200 (362)
T ss_pred ccccccccc-----ccccCchhheeeeecCccccchhhCcccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 94 333321 11468999988762222234579999864 89999999999999999999999999999999999
Q ss_pred hcccCCcCC---cccceeecccCCCCCCCCCCccccccCccCCCccEEecC-CCCceeEeeCCCCCCCceEEccCCCCcE
Q 023505 154 FEKVGALDA---PMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATD-GVPGLQVCREKFNQPRLWEDVPNIKGAL 229 (281)
Q Consensus 154 ~~~~~~~~~---~~~~lr~~~Yp~~~~~~~~~~~~~~~H~D~~~lTll~~~-~~~GLqv~~~~~~~~~~w~~v~~~~g~~ 229 (281)
|. +.+.. ..+.||++|||+++.+ +..+|+++|||+|+||||+|+ +++||||+.+++ |++|+|.||++
T Consensus 201 f~--~~~~~~~~~~~~lRl~~YP~~p~~--~~~~g~~~HtD~g~lTlL~q~~~v~GLQV~~~g~-----W~~V~p~pgal 271 (362)
T PLN02393 201 LQ--NAFGGEDGVGACLRVNYYPKCPQP--DLTLGLSPHSDPGGMTILLPDDNVAGLQVRRDDA-----WITVKPVPDAF 271 (362)
T ss_pred HH--HHhCCCccccceeeeeecCCCCCc--ccccccccccCCceEEEEeeCCCCCcceeeECCE-----EEECCCCCCeE
Confidence 98 55544 3479999999998764 567899999999999999984 689999995443 99999999999
Q ss_pred EEehhhhHHHHhCCcccccceeecCC-CCCeEEEEeeecCCCCCCCccCCCC
Q 023505 230 IVNIGDMMERWTNCLFRSTLHRVMSS-GQERYSVIICFLSHLCFPHSNAFGC 280 (281)
Q Consensus 230 ivn~Gd~l~~~T~G~~ks~~HRV~~~-~~~R~S~~~f~~p~~d~~~~~~~~~ 280 (281)
|||+||+|++||||+|||++|||+.+ +.+||||+||++|+.|++|.|+|.|
T Consensus 272 VVNiGD~l~~~Tng~~kSt~HRVv~~~~~~R~SiafF~~P~~d~~i~pl~~~ 323 (362)
T PLN02393 272 IVNIGDQIQVLSNAIYKSVEHRVIVNSAKERVSLAFFYNPKSDLPIEPLKEL 323 (362)
T ss_pred EEEcchhhHhhcCCeeeccceecccCCCCCEEEEEEEecCCCCceEeCcHHh
Confidence 99999999999999999999999975 5699999999999999999999864
No 18
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=100.00 E-value=3.6e-65 Score=455.20 Aligned_cols=262 Identities=25% Similarity=0.389 Sum_probs=221.3
Q ss_pred CCCCcEEeCCCc------chHHHHHHHHHHHHhcceEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhccccC----CC
Q 023505 4 ALQLPVIDLSSP------DRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKE----HR 73 (281)
Q Consensus 4 ~~~lPvIDl~~~------~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~----~~ 73 (281)
..+||+|||+.. .+..++++|.+||+++|||||+||||+.++++++++.+++||++|.|+|+++.... ++
T Consensus 45 ~~~iPvIDls~~~~~~~~~~~~~~~~l~~Ac~~~GFF~l~nHGI~~~l~~~~~~~~~~FF~LP~e~K~~~~~~~~~~~~~ 124 (360)
T PLN03178 45 GPQVPVVDLSNIESDDEVVREACVEAVRAAAAEWGVMHLVGHGIPADLLDRVRKAGEAFFRLPIEEKEKYANDQARGAAQ 124 (360)
T ss_pred CCCCCEEEchhhcCCChhhHHHHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHHhhccCCCCCcc
Confidence 457999999821 25678999999999999999999999999999999999999999999999986532 67
Q ss_pred ccccccccccCCCCCCCCCCceeeecCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhh
Q 023505 74 GYTALCDEILDPSSTSEGDPKESFYIGPLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDF 153 (281)
Q Consensus 74 Gy~~~~~e~~~~~~~~~~d~~E~~~~~p~~~~~~~~~~wP~~~~~~~f~~~~~~y~~~~~~~~~~ll~~l~~~lgl~~~~ 153 (281)
||.....+... ...||+|.|...........+|.||.. .|.|++.+++|++.|.+++.+|+++|+++||+++++
T Consensus 125 Gy~~~~~~~~~----~~~d~~e~~~~~~~p~~~~~~n~wP~~--~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~ 198 (360)
T PLN03178 125 GYGSKLAANAS----GQLEWEDYFFHLTLPEDKRDPSLWPKT--PPDYVPATSEYSRSLRSLATKLLAILSLGLGLPEDR 198 (360)
T ss_pred ccccccccccc----cccchhHhhccccCCccccccccCCCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 88653332211 135788877553111112357999985 489999999999999999999999999999999999
Q ss_pred hcccCCcC---CcccceeecccCCCCCCCCCCccccccCccCCCccEEecCCCCceeEeeCCCCCCCceEEccCCCCcEE
Q 023505 154 FEKVGALD---APMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQVCREKFNQPRLWEDVPNIKGALI 230 (281)
Q Consensus 154 ~~~~~~~~---~~~~~lr~~~Yp~~~~~~~~~~~~~~~H~D~~~lTll~~~~~~GLqv~~~~~~~~~~w~~v~~~~g~~i 230 (281)
|. +.+. ...+.+|++|||+++.+ +..+|+++|||+|+||||+|+.++||||+.+++ |++|+|.||++|
T Consensus 199 f~--~~~~~~~~~~~~lrl~~YP~~~~~--~~~~g~~~HTD~g~lTlL~qd~v~GLQV~~~g~-----Wi~V~p~pg~lv 269 (360)
T PLN03178 199 LE--KEVGGLEELLLQMKINYYPRCPQP--DLALGVEAHTDVSALTFILHNMVPGLQVLYEGK-----WVTAKCVPDSIV 269 (360)
T ss_pred HH--HHhcCcccchhhhheeccCCCCCC--ccccCcCCccCCCceEEEeeCCCCceeEeECCE-----EEEcCCCCCeEE
Confidence 98 6665 34678999999998764 467899999999999999999999999996544 999999999999
Q ss_pred EehhhhHHHHhCCcccccceeecC-CCCCeEEEEeeecCCCCCC-CccCCCC
Q 023505 231 VNIGDMMERWTNCLFRSTLHRVMS-SGQERYSVIICFLSHLCFP-HSNAFGC 280 (281)
Q Consensus 231 vn~Gd~l~~~T~G~~ks~~HRV~~-~~~~R~S~~~f~~p~~d~~-~~~~~~~ 280 (281)
||+||+|++||||+|||++|||+. ++.+||||+||++|+.|.. +.|+|.|
T Consensus 270 VNiGD~L~~~TNG~~kSt~HRVv~~~~~~R~Si~~F~~P~~d~~v~~pl~~~ 321 (360)
T PLN03178 270 VHIGDTLEILSNGRYKSILHRGLVNKEKVRISWAVFCEPPKEKIILKPLPEL 321 (360)
T ss_pred EEccHHHHHHhCCccccccceeecCCCCCeEEEEEEecCCcccccccCcHHH
Confidence 999999999999999999999986 5668999999999999975 5888764
No 19
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=100.00 E-value=8.2e-65 Score=446.86 Aligned_cols=260 Identities=25% Similarity=0.414 Sum_probs=219.4
Q ss_pred CCCcEEeCCCcchHHHHHHHHHHHHhcceEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhccccCCCccccccccccC
Q 023505 5 LQLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKEHRGYTALCDEILD 84 (281)
Q Consensus 5 ~~lPvIDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~Gy~~~~~e~~~ 84 (281)
.+||||||++. +..++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++.....+||.... ..
T Consensus 25 ~~iPvIDls~~---~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~e~K~~~~~~~~~Gy~~~~---~~ 98 (335)
T PLN02156 25 VLIPVIDLTDS---DAKTQIVKACEEFGFFKVINHGVRPDLLTQLEQEAIGFFALPHSLKDKAGPPDPFGYGTKR---IG 98 (335)
T ss_pred CCCCcccCCCh---HHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhcCCCCCcccCccc---cC
Confidence 46999999853 2467899999999999999999999999999999999999999999998644445885321 11
Q ss_pred CCCCCCCCCceeeecCCCCC--CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-hhhhcccCCcC
Q 023505 85 PSSTSEGDPKESFYIGPLEG--TLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLN-EDFFEKVGALD 161 (281)
Q Consensus 85 ~~~~~~~d~~E~~~~~p~~~--~~~~~~~wP~~~~~~~f~~~~~~y~~~~~~~~~~ll~~l~~~lgl~-~~~~~~~~~~~ 161 (281)
.. ...+|+|.|.+..... ....+|.||..+ +.|++.+++|++.|.+++.+|+++|+++||++ +++|. +.+.
T Consensus 99 ~~--~~~~~~e~~~~~~~~~~~~~~~~~~wp~~p--~~fr~~~~~Y~~~~~~L~~~ll~~la~~LGl~~~~~f~--~~~~ 172 (335)
T PLN02156 99 PN--GDVGWLEYILLNANLCLESHKTTAVFRHTP--AIFREAVEEYMKEMKRMSSKVLEMVEEELKIEPKEKLS--KLVK 172 (335)
T ss_pred CC--CCCCceeeEeeecCCccccccchhcCcccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCcHHHHH--HHhc
Confidence 11 1358999998873221 122478899764 78999999999999999999999999999996 46787 5553
Q ss_pred --CcccceeecccCCCCCCCCCCccccccCccCCCccEEecCCCCceeEeeCCCCCCCceEEccCCCCcEEEehhhhHHH
Q 023505 162 --APMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQVCREKFNQPRLWEDVPNIKGALIVNIGDMMER 239 (281)
Q Consensus 162 --~~~~~lr~~~Yp~~~~~~~~~~~~~~~H~D~~~lTll~~~~~~GLqv~~~~~~~~~~w~~v~~~~g~~ivn~Gd~l~~ 239 (281)
...+.||++|||+++....+..+|+++|||+|+||||+||+++||||+.++++ |++|+|.||++|||+||+|++
T Consensus 173 ~~~~~~~lRl~~YP~~~~~~~~~~~g~~~HTD~g~lTlL~Qd~v~GLQV~~~~g~----Wi~Vpp~pga~VVNiGD~l~~ 248 (335)
T PLN02156 173 VKESDSCLRMNHYPEKEETPEKVEIGFGEHTDPQLISLLRSNDTAGLQICVKDGT----WVDVPPDHSSFFVLVGDTLQV 248 (335)
T ss_pred CCCccceEeEEeCCCCCCCccccccCCCCccCCCceEEEEeCCCCceEEEeCCCC----EEEccCCCCcEEEEhHHHHHH
Confidence 34689999999999764334678999999999999999999999999876554 999999999999999999999
Q ss_pred HhCCcccccceeecCC-CCCeEEEEeeecCCCCCCCccCCCC
Q 023505 240 WTNCLFRSTLHRVMSS-GQERYSVIICFLSHLCFPHSNAFGC 280 (281)
Q Consensus 240 ~T~G~~ks~~HRV~~~-~~~R~S~~~f~~p~~d~~~~~~~~~ 280 (281)
||||+|||+.|||+.+ +.+||||+||++|+.|++|.|++.+
T Consensus 249 wTNg~~kSt~HRVv~~~~~~R~SiafF~~P~~d~~i~pl~~~ 290 (335)
T PLN02156 249 MTNGRFKSVKHRVVTNTKRSRISMIYFAGPPLSEKIAPLSCL 290 (335)
T ss_pred HhCCeeeccceeeecCCCCCEEEEEEeecCCCCCEEeCChHh
Confidence 9999999999999974 5689999999999999999999853
No 20
>PLN02947 oxidoreductase
Probab=100.00 E-value=4.8e-65 Score=454.56 Aligned_cols=262 Identities=28% Similarity=0.417 Sum_probs=221.4
Q ss_pred CCCCCcEEeCCC---cchHHHHHHHHHHHHhcceEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhccccC---CCccc
Q 023505 3 EALQLPVIDLSS---PDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKE---HRGYT 76 (281)
Q Consensus 3 ~~~~lPvIDl~~---~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~---~~Gy~ 76 (281)
...+||+|||+. .++.+++++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++.... ..||.
T Consensus 63 ~~~~iPvIDls~l~~~~~~~~~~~l~~Ac~~~GFF~v~nHGIp~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~gyg 142 (374)
T PLN02947 63 GNLKLPVIDLAELRGSNRPHVLATLAAACREYGFFQVVNHGVPSEVIGGMIDVARRFFELPLEERAKYMSADMRAPVRYG 142 (374)
T ss_pred CCCCCCeEECcccCCccHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHhhhhcccCCCCeeec
Confidence 346899999984 346778999999999999999999999999999999999999999999999985432 45664
Q ss_pred cccccccCCCCCCCCCCceeeecCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---hhh
Q 023505 77 ALCDEILDPSSTSEGDPKESFYIGPLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLN---EDF 153 (281)
Q Consensus 77 ~~~~e~~~~~~~~~~d~~E~~~~~p~~~~~~~~~~wP~~~~~~~f~~~~~~y~~~~~~~~~~ll~~l~~~lgl~---~~~ 153 (281)
...... .....+|+|.+.+.... .....|.||..+ ++|++.+++|++.|.+++.+|+++|+++||++ .++
T Consensus 143 ~~~~~~----~~~~~~~~e~~~~~~~p-~~~~~~~WP~~~--~~fr~~~~~Y~~~~~~L~~~ll~~la~~Lgl~~~~~~~ 215 (374)
T PLN02947 143 TSFNQN----KDAVFCWRDFLKLVCHP-LSDVLPHWPSSP--ADLRKVAATYAKATKRLFLELMEAILESLGIVKRGSDE 215 (374)
T ss_pred cccccc----cccccCceeceeeecCC-cccccccCccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccchHH
Confidence 321111 11145888888765111 112368999875 89999999999999999999999999999996 456
Q ss_pred hcccCCcCCcccceeecccCCCCCCCCCCccccccCccCCCccEEecCCCCceeEeeCCCCCCCceEEccCCCCcEEEeh
Q 023505 154 FEKVGALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQVCREKFNQPRLWEDVPNIKGALIVNI 233 (281)
Q Consensus 154 ~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~~~H~D~~~lTll~~~~~~GLqv~~~~~~~~~~w~~v~~~~g~~ivn~ 233 (281)
|. +.+....+.+|++|||||+.+ +..+|+++|||+|+||||+|+.++||||+.++. |++|+|.||++|||+
T Consensus 216 ~~--~~~~~~~~~lrln~YPp~p~~--~~~~G~~~HTD~g~lTlL~Qd~v~GLQV~~~g~-----Wi~V~p~pga~VVNv 286 (374)
T PLN02947 216 LL--EEFEAGSQMMVVNCYPACPEP--ELTLGMPPHSDYGFLTLLLQDEVEGLQIMHAGR-----WVTVEPIPGSFVVNV 286 (374)
T ss_pred HH--HHhcCcceeeeeecCCCCCCc--ccccCCCCccCCCceEEEEecCCCCeeEeECCE-----EEeCCCCCCeEEEEe
Confidence 66 556667789999999999764 567899999999999999999999999998543 999999999999999
Q ss_pred hhhHHHHhCCcccccceeecCC-CCCeEEEEeeecCCCCCCCccCCCC
Q 023505 234 GDMMERWTNCLFRSTLHRVMSS-GQERYSVIICFLSHLCFPHSNAFGC 280 (281)
Q Consensus 234 Gd~l~~~T~G~~ks~~HRV~~~-~~~R~S~~~f~~p~~d~~~~~~~~~ 280 (281)
||+|++||||+|||++|||+.+ ..+||||+||+.|+.|++|.|+|.+
T Consensus 287 GD~Lq~~SNG~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~i~Pl~~l 334 (374)
T PLN02947 287 GDHLEIFSNGRYKSVLHRVRVNSTKPRISVASLHSLPFERVVGPAPEL 334 (374)
T ss_pred CceeeeeeCCEEeccccccccCCCCCEEEEEEEecCCCCCEEeCChHh
Confidence 9999999999999999999874 5699999999999999999999864
No 21
>PLN02904 oxidoreductase
Probab=100.00 E-value=2.6e-64 Score=448.07 Aligned_cols=261 Identities=28% Similarity=0.450 Sum_probs=218.9
Q ss_pred CCCcEEeCCC----cchHHHHHHHHHHHHhcceEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhccccCCCccccccc
Q 023505 5 LQLPVIDLSS----PDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKEHRGYTALCD 80 (281)
Q Consensus 5 ~~lPvIDl~~----~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~Gy~~~~~ 80 (281)
..||+|||+. ..+..++++|.+||++||||+|+||||+.++++++++.+++||++|.|+|+++......||.+++.
T Consensus 50 ~~iPvIDls~~~~~~~r~~~~~~l~~Ac~~~GFf~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~~~g~ 129 (357)
T PLN02904 50 ITLPVIDLSLLHDPLLRSCVIHEIEMACKGFGFFQVINHGIPSSVVKDALDAATRFFDLPVDEKMLLVSDNVHEPVRYGT 129 (357)
T ss_pred CCCCEEECcccCCchhHHHHHHHHHHHHHHCceEEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHhhhcccCCCCcccccc
Confidence 6799999983 235678999999999999999999999999999999999999999999999976432222222222
Q ss_pred cccCCCCCCCCCCceeeecC--CCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhcccC
Q 023505 81 EILDPSSTSEGDPKESFYIG--PLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEKVG 158 (281)
Q Consensus 81 e~~~~~~~~~~d~~E~~~~~--p~~~~~~~~~~wP~~~~~~~f~~~~~~y~~~~~~~~~~ll~~l~~~lgl~~~~~~~~~ 158 (281)
+... ......+|+|.+... |.. ..+|.||... |.|++.+.+|++.|.+++.+|+++|+++||+++++|. +
T Consensus 130 ~~~~-~~~~~~~~~d~~~~~~~p~~---~~~n~WP~~~--p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~--~ 201 (357)
T PLN02904 130 SLNH-STDRVHYWRDFIKHYSHPLS---KWINLWPSNP--PCYKEKVGKYAEATHVLHKQLIEAISESLGLEKNYLQ--E 201 (357)
T ss_pred cccc-cCCCCCCceEEeeeccCCcc---cccccCcccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH--H
Confidence 2111 111133677765443 211 2368999764 8999999999999999999999999999999999998 7
Q ss_pred CcCCcccceeecccCCCCCCCCCCccccccCccCCCccEEecCCCCceeEeeCCCCCCCceEEccCCCCcEEEehhhhHH
Q 023505 159 ALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQVCREKFNQPRLWEDVPNIKGALIVNIGDMME 238 (281)
Q Consensus 159 ~~~~~~~~lr~~~Yp~~~~~~~~~~~~~~~H~D~~~lTll~~~~~~GLqv~~~~~~~~~~w~~v~~~~g~~ivn~Gd~l~ 238 (281)
.+....+.||++|||||+.+ +..+|+++|||+|+||||+|+. +||||+.++|+ |++|+|.||++|||+||+|+
T Consensus 202 ~~~~~~~~lrl~~YPp~p~~--~~~~g~~~HtD~g~lTlL~qd~-~GLQV~~~~g~----Wi~V~p~pgalVVNiGD~Le 274 (357)
T PLN02904 202 EIEEGSQVMAVNCYPACPEP--EIALGMPPHSDFGSLTILLQSS-QGLQIMDCNKN----WVCVPYIEGALIVQLGDQVE 274 (357)
T ss_pred HhcCcccEEEeeecCCCCCc--ccccCCcCccCCCceEEEecCC-CeeeEEeCCCC----EEECCCCCCeEEEEccHHHH
Confidence 77777789999999999764 4688999999999999999985 89999987654 99999999999999999999
Q ss_pred HHhCCcccccceeecCC-CCCeEEEEeeecCCCCCCCccCCCC
Q 023505 239 RWTNCLFRSTLHRVMSS-GQERYSVIICFLSHLCFPHSNAFGC 280 (281)
Q Consensus 239 ~~T~G~~ks~~HRV~~~-~~~R~S~~~f~~p~~d~~~~~~~~~ 280 (281)
+||||+|||++|||+.+ ..+||||+||+.|+.|+.|.|+|.+
T Consensus 275 ~~TNG~~kSt~HRVv~~~~~~R~Si~~F~~p~~d~~i~Pl~~~ 317 (357)
T PLN02904 275 VMSNGIYKSVVHRVTVNKDYKRLSFASLHSLPLHKKISPAPEL 317 (357)
T ss_pred HHhCCeeeccCCcccCCCCCCEEEEEEeecCCCCCeEeCCHHH
Confidence 99999999999999975 5699999999999999999999763
No 22
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=100.00 E-value=1.3e-63 Score=435.14 Aligned_cols=254 Identities=26% Similarity=0.368 Sum_probs=214.1
Q ss_pred CCCCCCcEEeCCCcchHHHHHHHHHHHHhcceEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhccccC-CCccccccc
Q 023505 2 TEALQLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKE-HRGYTALCD 80 (281)
Q Consensus 2 ~~~~~lPvIDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~-~~Gy~~~~~ 80 (281)
|+...||||||+... ..+++|.+||++||||||+||||+.++++++++.+++||++|.|+|+++.... .+||.+.+.
T Consensus 1 ~~~~~iPvIDls~~~--~~~~~l~~Ac~~~GfF~l~nHGi~~~l~~~~~~~~~~FF~LP~e~K~~~~~~~~~~GY~~~~~ 78 (300)
T PLN02365 1 MAEVNIPTIDLEEFP--GQIEKLREACERWGCFRVVNHGVSLSLMAEMKKVVRSLFDLPDEVKRRNTDVILGSGYMAPSE 78 (300)
T ss_pred CCcCCCCEEEChhhH--HHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHhhccCCCCCCCCCCcCC
Confidence 677889999998642 23689999999999999999999999999999999999999999999965444 789986533
Q ss_pred cccCCCCCCCCCCceeeecCCCCCCCCCCCCCCCC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChhhhcccC
Q 023505 81 EILDPSSTSEGDPKESFYIGPLEGTLSSMNQWPSL-EILPTWRSTMEYYHQKVLSAGRRLIHLIALALNL-NEDFFEKVG 158 (281)
Q Consensus 81 e~~~~~~~~~~d~~E~~~~~p~~~~~~~~~~wP~~-~~~~~f~~~~~~y~~~~~~~~~~ll~~l~~~lgl-~~~~~~~~~ 158 (281)
..+++|.+.+..... ...++.||.. +..|+|++.+++|++.|.+++.+|+++|+++||+ ++++|. +
T Consensus 79 ---------~~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~f~--~ 146 (300)
T PLN02365 79 ---------VNPLYEALGLYDMAS-PQAVDTFCSQLDASPHQRETIKKYAKAIHDLAMDLARKLAESLGLVEGDFFQ--G 146 (300)
T ss_pred ---------CCCchhheecccccC-chhhhhccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHh--h
Confidence 236778877651110 0112334421 1237899999999999999999999999999999 788887 4
Q ss_pred CcCCcccceeecccCCCCCCCCCCccccccCccCCCccEEecCC-CCceeEeeC-CCCCCCceEEccCCCCcEEEehhhh
Q 023505 159 ALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDG-VPGLQVCRE-KFNQPRLWEDVPNIKGALIVNIGDM 236 (281)
Q Consensus 159 ~~~~~~~~lr~~~Yp~~~~~~~~~~~~~~~H~D~~~lTll~~~~-~~GLqv~~~-~~~~~~~w~~v~~~~g~~ivn~Gd~ 236 (281)
. .+.||++|||+++.+ +..+|+++|||+|+||||+||+ ++||||+.+ +| +|++|+|.||++|||+||+
T Consensus 147 ~----~~~lr~~~YP~~p~~--~~~~g~~~HtD~g~lTlL~qd~~~~GLqV~~~~~g----~Wi~V~p~pga~vVNiGD~ 216 (300)
T PLN02365 147 W----PSQFRINKYNFTPET--VGSSGVQIHTDSGFLTILQDDENVGGLEVMDPSSG----EFVPVDPLPGTLLVNLGDV 216 (300)
T ss_pred c----ccceeeeecCCCCCc--cccccccCccCCCceEEEecCCCcCceEEEECCCC----eEEecCCCCCeEEEEhhHH
Confidence 3 478999999998763 5678999999999999999984 999999986 44 3999999999999999999
Q ss_pred HHHHhCCcccccceeecCC-CCCeEEEEeeecCCCCCCCccCCC
Q 023505 237 MERWTNCLFRSTLHRVMSS-GQERYSVIICFLSHLCFPHSNAFG 279 (281)
Q Consensus 237 l~~~T~G~~ks~~HRV~~~-~~~R~S~~~f~~p~~d~~~~~~~~ 279 (281)
|++||||+|||++|||+.+ +.+||||+||+.|+.|++|.|+|.
T Consensus 217 l~~~TNG~~~St~HRVv~~~~~~R~Si~~F~~p~~d~~i~p~~~ 260 (300)
T PLN02365 217 ATAWSNGRLCNVKHRVQCKEATMRISIASFLLGPKDDDVEAPPE 260 (300)
T ss_pred HHHHhCCceecccceeEcCCCCCEEEEEEEecCCCCCeEeCCHH
Confidence 9999999999999999985 458999999999999999999764
No 23
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=100.00 E-value=4.8e-63 Score=432.99 Aligned_cols=260 Identities=35% Similarity=0.552 Sum_probs=225.2
Q ss_pred CCCCcEEeCCCc-----chHHHHHHHHHHHHhcceEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhccccC--CCccc
Q 023505 4 ALQLPVIDLSSP-----DRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKE--HRGYT 76 (281)
Q Consensus 4 ~~~lPvIDl~~~-----~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~--~~Gy~ 76 (281)
..+||+|||+.. .+.+..++|++||++||||+|+||||+.++++++.+.+++||++|.|+|+++.... +.||.
T Consensus 15 ~~~iPvIDls~~~~~~~~~~~~~~~i~~Ace~wGfFqviNHGI~~~l~~~~~~~~~~fF~lP~eeK~k~~~~~~~~~gY~ 94 (322)
T KOG0143|consen 15 ELDIPVIDLSCLDSDDPGREEVVEKLREACEEWGFFQVINHGISLELLDKVKEASKEFFELPLEEKLKVASEPGKYRGYG 94 (322)
T ss_pred CCCcCeEECCCCCCcchhHHHHHHHHHHHHHHCCeeEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHHhhccCCCCccccc
Confidence 468999999832 26778999999999999999999999999999999999999999999999988765 58887
Q ss_pred cccccccCCCCCCCCCCceeeecC--CCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhh
Q 023505 77 ALCDEILDPSSTSEGDPKESFYIG--PLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFF 154 (281)
Q Consensus 77 ~~~~e~~~~~~~~~~d~~E~~~~~--p~~~~~~~~~~wP~~~~~~~f~~~~~~y~~~~~~~~~~ll~~l~~~lgl~~~~~ 154 (281)
..... .. ....+|.+.+.+. |. ....++.||+.+ +.|++.|.+|.+.+.+++.+|+++|+++||++.+++
T Consensus 95 ~~~~~-~~---~~~~~w~d~~~~~~~p~--~~~~~~~wp~~p--~~~re~~~eY~~~~~~L~~~l~~~l~eslgl~~~~~ 166 (322)
T KOG0143|consen 95 TSFIL-SP---LKELDWRDYLTLLSAPE--SSFDPNLWPEGP--PEFRETMEEYAKEVMELSEKLLRLLSESLGLEPEYL 166 (322)
T ss_pred ccccc-cc---cccccchhheeeeccCc--cccCcccCcccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 55433 11 1145788877765 32 125678999976 899999999999999999999999999999997666
Q ss_pred cccCCcCC-cccceeecccCCCCCCCCCCccccccCccCCCccEEecC-CCCceeEeeCCCCCCCceEEccCCCCcEEEe
Q 023505 155 EKVGALDA-PMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATD-GVPGLQVCREKFNQPRLWEDVPNIKGALIVN 232 (281)
Q Consensus 155 ~~~~~~~~-~~~~lr~~~Yp~~~~~~~~~~~~~~~H~D~~~lTll~~~-~~~GLqv~~~~~~~~~~w~~v~~~~g~~ivn 232 (281)
. ..+.. ....+|+++||||+.+ +.++|+++|||.++||+|.|| .++||||...++ .|++|+|.||++|||
T Consensus 167 ~--~~~~~~~~~~~r~n~Yp~cp~p--e~~lGl~~HtD~~~lTiLlqd~~V~GLQv~~~dg----~Wi~V~P~p~a~vVN 238 (322)
T KOG0143|consen 167 E--KLFGETGGQVMRLNYYPPCPEP--ELTLGLGAHTDKSFLTILLQDDDVGGLQVFTKDG----KWIDVPPIPGAFVVN 238 (322)
T ss_pred H--HhhCCccceEEEEeecCCCcCc--cccccccCccCcCceEEEEccCCcCceEEEecCC----eEEECCCCCCCEEEE
Confidence 6 56665 4669999999999985 789999999999999999998 899999997332 399999999999999
Q ss_pred hhhhHHHHhCCcccccceeecCCC-CCeEEEEeeecCCCCCCCccCCC
Q 023505 233 IGDMMERWTNCLFRSTLHRVMSSG-QERYSVIICFLSHLCFPHSNAFG 279 (281)
Q Consensus 233 ~Gd~l~~~T~G~~ks~~HRV~~~~-~~R~S~~~f~~p~~d~~~~~~~~ 279 (281)
+||+|++||||+|||+.|||+..+ .+|+|+|||+.|+.|.+|.|++.
T Consensus 239 iGD~l~~lSNG~ykSv~HRV~~n~~~~R~Sia~F~~p~~d~~i~p~~e 286 (322)
T KOG0143|consen 239 IGDMLQILSNGRYKSVLHRVVVNGEKERISVAFFVFPPLDKVIGPPEE 286 (322)
T ss_pred cccHHhHhhCCcccceEEEEEeCCCCceEEEEEEecCCCCceecChhh
Confidence 999999999999999999999865 46999999999999999999876
No 24
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=100.00 E-value=3e-63 Score=431.72 Aligned_cols=255 Identities=29% Similarity=0.453 Sum_probs=213.3
Q ss_pred CCCcEEeCCC---cchHHHHHHHHHHHHhcceEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhccccCCCcccccccc
Q 023505 5 LQLPVIDLSS---PDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKEHRGYTALCDE 81 (281)
Q Consensus 5 ~~lPvIDl~~---~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~Gy~~~~~e 81 (281)
++||+|||+. .++.+++++|.+||++||||||+||||+.++++++++.++.||++|.++|... .....++...+.
T Consensus 1 ~~iPvIDls~~~~~~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~l~~~~~~~~~~FF~LP~e~k~~~-~~~~~~~~~~~~- 78 (303)
T PLN02403 1 MEIPVIDFDQLDGEKRSKTMSLLHQACEKWGFFQVENHGIDKKLMEKVKQLVNSHYEENLKESFYE-SEIAKALDNEGK- 78 (303)
T ss_pred CCCCeEeCccCCcccHHHHHHHHHHHHHhCceEEEECCCCCHHHHHHHHHHHHHHhcCCHHHHhhc-ccccCcccccCC-
Confidence 3799999984 24667899999999999999999999999999999999999999999998621 111222221111
Q ss_pred ccCCCCCCCCCCceeeecCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhcccCCcC
Q 023505 82 ILDPSSTSEGDPKESFYIGPLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEKVGALD 161 (281)
Q Consensus 82 ~~~~~~~~~~d~~E~~~~~p~~~~~~~~~~wP~~~~~~~f~~~~~~y~~~~~~~~~~ll~~l~~~lgl~~~~~~~~~~~~ 161 (281)
....||+|.|.+++.. ....|.||+.+ |+|++.+++|+++|.+++.+|+++++++||+++++|. +.+.
T Consensus 79 ------~~~~d~kE~~~~~~~p--~~~~~~wP~~~--p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~--~~~~ 146 (303)
T PLN02403 79 ------TSDVDWESSFFIWHRP--TSNINEIPNLS--EDLRKTMDEYIAQLIKLAEKLSELMSENLGLDKDYIK--EAFS 146 (303)
T ss_pred ------CCCccHhhhcccccCC--ccchhhCCCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH--HHhc
Confidence 1145999999986211 12468899754 8999999999999999999999999999999999998 6554
Q ss_pred ---CcccceeecccCCCCCCCCCCccccccCccCCCccEEecC-CCCceeEeeCCCCCCCceEEccCCC-CcEEEehhhh
Q 023505 162 ---APMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATD-GVPGLQVCREKFNQPRLWEDVPNIK-GALIVNIGDM 236 (281)
Q Consensus 162 ---~~~~~lr~~~Yp~~~~~~~~~~~~~~~H~D~~~lTll~~~-~~~GLqv~~~~~~~~~~w~~v~~~~-g~~ivn~Gd~ 236 (281)
.....+|++|||+++.+ +...|+++|||+|+||||+|+ +++||||+.++. |++|+|.| |++|||+||+
T Consensus 147 ~~~~~~~~lrl~~YP~~~~~--~~~~G~~~HtD~g~lTlL~q~~~v~GLqV~~~g~-----Wi~V~p~p~~~lvVNvGD~ 219 (303)
T PLN02403 147 GNKGPSVGTKVAKYPECPRP--ELVRGLREHTDAGGIILLLQDDQVPGLEFLKDGK-----WVPIPPSKNNTIFVNTGDQ 219 (303)
T ss_pred cCCCccceeeeEcCCCCCCc--ccccCccCccCCCeEEEEEecCCCCceEeccCCe-----EEECCCCCCCEEEEEehHH
Confidence 23456999999998754 456789999999999999997 599999975433 99999999 6999999999
Q ss_pred HHHHhCCcccccceeecCC-CCCeEEEEeeecCCCCCCCccCCCC
Q 023505 237 MERWTNCLFRSTLHRVMSS-GQERYSVIICFLSHLCFPHSNAFGC 280 (281)
Q Consensus 237 l~~~T~G~~ks~~HRV~~~-~~~R~S~~~f~~p~~d~~~~~~~~~ 280 (281)
|++||||+|||++|||+.+ +.+|||++||++|+.|++|.|+|++
T Consensus 220 L~~~Tng~~~S~~HRVv~~~~~~R~Si~~F~~p~~d~~i~pl~~~ 264 (303)
T PLN02403 220 LEVLSNGRYKSTLHRVMADKNGSRLSIATFYNPAGDAIISPAPKL 264 (303)
T ss_pred HHHHhCCeeecccceeecCCCCCEEEEEEEEcCCCCCeEeCchhh
Confidence 9999999999999999985 5589999999999999999999874
No 25
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=7.8e-63 Score=435.28 Aligned_cols=259 Identities=29% Similarity=0.398 Sum_probs=211.5
Q ss_pred CCCCcEEeCCCcchHHHHHHHHHHHHhcceEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhccc-cCCC----ccccc
Q 023505 4 ALQLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLAR-KEHR----GYTAL 78 (281)
Q Consensus 4 ~~~lPvIDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~-~~~~----Gy~~~ 78 (281)
..+||+|||+.. ..++|.+||++||||||+||||+.++++++++.+++||++|.|+|+++.. .... ||...
T Consensus 36 ~~~IPvIDls~~----~~~~l~~A~~~~GFF~v~nHGI~~~li~~~~~~s~~FF~LP~eeK~k~~~~~~~~~~~~g~~~~ 111 (341)
T PLN02984 36 DIDIPVIDMECL----DMEKLREACKDWGIFRLENHGIPLTLMSQLKEISESLLSLPFESKRELFGVNSPLSYFWGTPAL 111 (341)
T ss_pred cCCCCeEeCcHH----HHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhcccCCCCccccCcccc
Confidence 567999999853 25899999999999999999999999999999999999999999999752 1122 32211
Q ss_pred ccc---ccCCCCCCCCCCceeeecCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--hhh
Q 023505 79 CDE---ILDPSSTSEGDPKESFYIGPLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLN--EDF 153 (281)
Q Consensus 79 ~~e---~~~~~~~~~~d~~E~~~~~p~~~~~~~~~~wP~~~~~~~f~~~~~~y~~~~~~~~~~ll~~l~~~lgl~--~~~ 153 (281)
..+ ..........|++|.|.++..... ...+.||..+.+|.|++.+++|++.|.+++.+|+++|+++||++ +++
T Consensus 112 ~~~~~~~~~~~~~~~~D~kE~f~~~~~~~~-~~~~~p~~~~~~p~fr~~~~~y~~~~~~La~~ll~~lA~~Lgl~~~~~~ 190 (341)
T PLN02984 112 TPSGKALSRGPQESNVNWVEGFNIPLSSLS-LLQTLSCSDPKLESFRVLMEEYGKHLTRIAVTLFEAIAKTLSLELSGDQ 190 (341)
T ss_pred cccccccccccccCCCCeeeEEeCcCCchh-hhhhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhH
Confidence 111 111111114699999998722110 01122233333588999999999999999999999999999999 899
Q ss_pred hcccCCcCCcccceeecccCCCCCCCCCCccccccCccCCCccEEecCCCCceeEeeCCCCCCCceEEccCCCCcEEEeh
Q 023505 154 FEKVGALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQVCREKFNQPRLWEDVPNIKGALIVNI 233 (281)
Q Consensus 154 ~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~~~H~D~~~lTll~~~~~~GLqv~~~~~~~~~~w~~v~~~~g~~ivn~ 233 (281)
|. +.+....+.||++||||++.+ +..+|+++|||+|+||||+||+++||||+.++. |++|+|.||++|||+
T Consensus 191 f~--~~~~~~~~~lRl~~YPp~~~~--~~~~g~~aHTD~g~lTlL~Qd~v~GLQV~~~g~-----Wv~V~p~pgalVVNi 261 (341)
T PLN02984 191 KM--SYLSESTGVIRVYRYPQCSNE--AEAPGMEVHTDSSVISILNQDEVGGLEVMKDGE-----WFNVKPIANTLVVNL 261 (341)
T ss_pred HH--HHhcCccceEEEEeCCCCCCc--ccccCccCccCCCceEEEEeCCCCCeeEeeCCc-----eEECCCCCCeEEEEC
Confidence 98 777778889999999999763 567899999999999999999999999986443 999999999999999
Q ss_pred hhhHHHHhCCcccccceeecC--CCCCeEEEEeeecCCCCCCCcc
Q 023505 234 GDMMERWTNCLFRSTLHRVMS--SGQERYSVIICFLSHLCFPHSN 276 (281)
Q Consensus 234 Gd~l~~~T~G~~ks~~HRV~~--~~~~R~S~~~f~~p~~d~~~~~ 276 (281)
||+|++||||+|||++|||+. +..+|||++||++|+.|++|.|
T Consensus 262 GD~Le~wTNg~~kSt~HRVv~~~~~~~R~Sia~F~~P~~d~~i~p 306 (341)
T PLN02984 262 GDMMQVISDDEYKSVLHRVGKRNKKKERYSICYFVFPEEDCVIKS 306 (341)
T ss_pred ChhhhhhcCCeeeCCCCccccCCCCCCeEEEEEEecCCCCCEEcc
Confidence 999999999999999999964 3568999999999999999975
No 26
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=4.4e-54 Score=366.88 Aligned_cols=218 Identities=24% Similarity=0.328 Sum_probs=184.4
Q ss_pred HHHHHHhhc-CCHHHHhhccccC----CCccccccccccCCCCCCCCCCceeeecCCCCCCCCCCCCCCCCCCCchHHHH
Q 023505 50 FNESKKFFS-LQLEDKMKLARKE----HRGYTALCDEILDPSSTSEGDPKESFYIGPLEGTLSSMNQWPSLEILPTWRST 124 (281)
Q Consensus 50 ~~~~~~fF~-lp~e~K~~~~~~~----~~Gy~~~~~e~~~~~~~~~~d~~E~~~~~p~~~~~~~~~~wP~~~~~~~f~~~ 124 (281)
.+.+++||+ ||.|+|+++.... .+||.....+.. ......||+|.|.+.........+|.||..+ |.|++.
T Consensus 2 ~~~~~~FF~~LP~eeK~~~~~~~~~~~~~GY~~~~~~~~--~~~~~~d~kE~~~~~~~p~~~~~~n~wP~~~--~~f~~~ 77 (262)
T PLN03001 2 RSLGLSFFKDSPMEEKLRYACDPGSAASEGYGSRMLLGA--KDDTVLDWRDFFDHHTFPLSRRNPSHWPDFP--PDYREV 77 (262)
T ss_pred hHHHHHHHhhCCHHHHHHhhcCCCCCCcccccccccccc--CCCCccCchheeEeeecCccccchhhCCCCc--HHHHHH
Confidence 467899997 9999999976542 679954332211 1112469999999852111123579999865 899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChhhhcccCCcCCcccceeecccCCCCCCCCCCccccccCccCCCccEEecCCCC
Q 023505 125 MEYYHQKVLSAGRRLIHLIALALNLNEDFFEKVGALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVP 204 (281)
Q Consensus 125 ~~~y~~~~~~~~~~ll~~l~~~lgl~~~~~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~~~H~D~~~lTll~~~~~~ 204 (281)
+++|++.|.+++.+|+++++++||+++++|. +.+....+.+|++||||++.+ +..+|+++|||+|+||||+||+++
T Consensus 78 ~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~--~~~~~~~~~lrl~~YP~~~~~--~~~~g~~~HtD~g~lTlL~qd~v~ 153 (262)
T PLN03001 78 VGEYGDCMKALAQKLLAFISESLGLPCSCIE--DAVGDFYQNITVSYYPPCPQP--ELTLGLQSHSDFGAITLLIQDDVE 153 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH--HHhcCcchhheeecCCCCCCc--ccccCCcCCcCCCeeEEEEeCCCC
Confidence 9999999999999999999999999999998 666667788999999999764 568899999999999999999999
Q ss_pred ceeEeeCCCCCCCceEEccCCCCcEEEehhhhHHHHhCCcccccceeecCC-CCCeEEEEeeecCCCCCCCccCCCC
Q 023505 205 GLQVCREKFNQPRLWEDVPNIKGALIVNIGDMMERWTNCLFRSTLHRVMSS-GQERYSVIICFLSHLCFPHSNAFGC 280 (281)
Q Consensus 205 GLqv~~~~~~~~~~w~~v~~~~g~~ivn~Gd~l~~~T~G~~ks~~HRV~~~-~~~R~S~~~f~~p~~d~~~~~~~~~ 280 (281)
||||+.+++ |++|+|.||++||||||+|++||||+|||++|||+.+ ..+||||+||++|+.|++|.|++.|
T Consensus 154 GLqV~~~g~-----Wi~V~p~p~a~vVNiGD~l~~~tng~~~S~~HRVv~~~~~~R~Sia~F~~p~~d~~i~p~~e~ 225 (262)
T PLN03001 154 GLQLLKDAE-----WLMVPPISDAILIIIADQTEIITNGNYKSAQHRAIANANKARLSVATFHDPAKTAKIAPASAL 225 (262)
T ss_pred ceEEeeCCe-----EEECCCCCCcEEEEccHHHHHHhCCccccccceEEcCCCCCEEEEEEEEcCCCCCEEeCChHh
Confidence 999986544 9999999999999999999999999999999999985 5689999999999999999998753
No 27
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=99.91 E-value=8.6e-25 Score=160.20 Aligned_cols=94 Identities=41% Similarity=0.643 Sum_probs=74.0
Q ss_pred cceeecccCCCCCCCCCCccccccCccC--CCccEEecCCCCceeEeeCCCCCCCceEEccCCCCcEEEehhhhHHHHhC
Q 023505 165 AFLRLLHYPGELVSSNQEVCGASAHSDY--GMITLLATDGVPGLQVCREKFNQPRLWEDVPNIKGALIVNIGDMMERWTN 242 (281)
Q Consensus 165 ~~lr~~~Yp~~~~~~~~~~~~~~~H~D~--~~lTll~~~~~~GLqv~~~~~~~~~~w~~v~~~~g~~ivn~Gd~l~~~T~ 242 (281)
+.+|+++|++ ++...++++|+|. +++|+++|++.+|||+...+. |+.|++.++.++||+||+|++|||
T Consensus 2 ~~~~~~~Y~~-----~~~~~~~~~H~D~~~~~~Til~~~~~~gL~~~~~~~-----~~~v~~~~~~~~v~~G~~l~~~t~ 71 (98)
T PF03171_consen 2 SQLRLNRYPP-----PENGVGIGPHTDDEDGLLTILFQDEVGGLQVRDDGE-----WVDVPPPPGGFIVNFGDALEILTN 71 (98)
T ss_dssp -EEEEEEE-S-----CCGCEEEEEEEES--SSEEEEEETSTS-EEEEETTE-----EEE----TTCEEEEEBHHHHHHTT
T ss_pred CEEEEEECCC-----cccCCceeCCCcCCCCeEEEEecccchheecccccc-----ccCccCccceeeeeceeeeecccC
Confidence 5799999998 2456799999999 999999998899999999986 999999999999999999999999
Q ss_pred CcccccceeecCC-CCCeEEEEeeecC
Q 023505 243 CLFRSTLHRVMSS-GQERYSVIICFLS 268 (281)
Q Consensus 243 G~~ks~~HRV~~~-~~~R~S~~~f~~p 268 (281)
|.++|++|||+.+ ...|+|++||++|
T Consensus 72 g~~~~~~HrV~~~~~~~R~s~~~f~~p 98 (98)
T PF03171_consen 72 GRYPATLHRVVPPTEGERYSLTFFLRP 98 (98)
T ss_dssp TSS----EEEE--STS-EEEEEEEEE-
T ss_pred CccCCceeeeEcCCCCCEEEEEEEECC
Confidence 9999999999996 4799999999998
No 28
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=99.91 E-value=1.9e-24 Score=163.27 Aligned_cols=106 Identities=48% Similarity=0.825 Sum_probs=89.2
Q ss_pred CcEEeCC--CcchHHHHHHHHHHHHhcceEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhccccC-CCcccccccccc
Q 023505 7 LPVIDLS--SPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKE-HRGYTALCDEIL 83 (281)
Q Consensus 7 lPvIDl~--~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~-~~Gy~~~~~e~~ 83 (281)
||||||+ ..++.+++++|.+||+++|||||+||||+.++++++++.+++||++|.++|+++.+.. .+||.+.+.+..
T Consensus 1 iPvIDls~~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~~~~~Gy~~~~~~~~ 80 (116)
T PF14226_consen 1 IPVIDLSPDPADREEVAEQLRDACEEWGFFYLVNHGIPQELIDRVFAAAREFFALPLEEKQKYARSPSYRGYSPPGSEST 80 (116)
T ss_dssp --EEEHGGCHHHHHHHHHHHHHHHHHTSEEEEESSSSSHHHHHHHHHHHHHHHCSHHHHHHHHBCCTTCSEEEESEEECC
T ss_pred CCeEECCCCCccHHHHHHHHHHHHHhCCEEEEecccccchhhHHHHHHHHHHHHhhHHHHHHhcCCCCCcccccCCcccc
Confidence 7999998 4457889999999999999999999999999999999999999999999999996666 999999988877
Q ss_pred CCCCCCCCCCceeeecCCC---CC----CCCCCCCCCCC
Q 023505 84 DPSSTSEGDPKESFYIGPL---EG----TLSSMNQWPSL 115 (281)
Q Consensus 84 ~~~~~~~~d~~E~~~~~p~---~~----~~~~~~~wP~~ 115 (281)
.+ ...|++|.|++++. ++ .+..+|.||++
T Consensus 81 ~~---~~~d~~E~~~~~~~~~~~~p~~~~~~~~n~WP~~ 116 (116)
T PF14226_consen 81 DG---GKPDWKESFNIGPDLPEDDPAYPPLYGPNIWPDE 116 (116)
T ss_dssp TT---CCCCSEEEEEEECC-STTCHHTGCTS-GGGS-TT
T ss_pred CC---CCCCceEEeEEECCCCccccccccccCCCCCCCC
Confidence 65 25699999999833 21 45789999963
No 29
>PLN03176 flavanone-3-hydroxylase; Provisional
Probab=99.73 E-value=1.5e-17 Score=125.35 Aligned_cols=73 Identities=32% Similarity=0.661 Sum_probs=64.2
Q ss_pred CCCCcEEeCCCc-----chHHHHHHHHHHHHhcceEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhccccC--CCccc
Q 023505 4 ALQLPVIDLSSP-----DRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKE--HRGYT 76 (281)
Q Consensus 4 ~~~lPvIDl~~~-----~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~--~~Gy~ 76 (281)
..+||||||+.. .+.+++++|.+||++||||||+||||+.++++++++.+++||++|.++|+++.... ..||.
T Consensus 35 ~~~iPvIDls~~~~~~~~~~~~~~~L~~A~~~~GFf~l~nhGi~~elid~~~~~~~~FF~LP~e~K~k~~~~~~~~~gy~ 114 (120)
T PLN03176 35 SNEIPVISIAGIDDGGEKRAEICNKIVEACEEWGVFQIVDHGVDAKLVSEMTTLAKEFFALPPEEKLRFDMSGGKKGGFI 114 (120)
T ss_pred CCCCCeEECccccCCchHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHhcccCCCccCCcc
Confidence 357999999832 25568999999999999999999999999999999999999999999999987654 56774
No 30
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=95.95 E-value=0.0056 Score=44.25 Aligned_cols=81 Identities=27% Similarity=0.361 Sum_probs=52.1
Q ss_pred eeecccCCCCCCCCCCccccccCccC-----CCccEEec--CC-----CCceeEeeCCCCCCCceEEcc-----CCCCcE
Q 023505 167 LRLLHYPGELVSSNQEVCGASAHSDY-----GMITLLAT--DG-----VPGLQVCREKFNQPRLWEDVP-----NIKGAL 229 (281)
Q Consensus 167 lr~~~Yp~~~~~~~~~~~~~~~H~D~-----~~lTll~~--~~-----~~GLqv~~~~~~~~~~w~~v~-----~~~g~~ 229 (281)
+++++|.+- -...+|+|. ..+|+++. +. -+.|++.... ..++....++ |.+|.+
T Consensus 1 ~~~~~y~~G--------~~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~-~~~~~~~~~~~~~~~p~~g~~ 71 (100)
T PF13640_consen 1 MQLNRYPPG--------GFFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSK-DSDDVSREVEDFDIVPKPGRL 71 (100)
T ss_dssp -EEEEEETT--------EEEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS--TSSTCEEEGGGSEE-BTTEE
T ss_pred CEEEEECcC--------CEEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccc-cCCCcceEEEeccccCCCCEE
Confidence 356677532 258899998 57887743 22 2558877642 0012366776 999999
Q ss_pred EEehhhhHHHHhCCcccccceeecCC--CCCeEEEEeeec
Q 023505 230 IVNIGDMMERWTNCLFRSTLHRVMSS--GQERYSVIICFL 267 (281)
Q Consensus 230 ivn~Gd~l~~~T~G~~ks~~HRV~~~--~~~R~S~~~f~~ 267 (281)
|+.-+ ...+|+|... +..|+++.+|++
T Consensus 72 v~F~~-----------~~~~H~v~~v~~~~~R~~l~~~~~ 100 (100)
T PF13640_consen 72 VIFPS-----------DNSLHGVTPVGEGGRRYSLTFWFH 100 (100)
T ss_dssp EEEES-----------CTCEEEEEEE-EESEEEEEEEEEE
T ss_pred EEEeC-----------CCCeecCcccCCCCCEEEEEEEEC
Confidence 98866 5679999864 559999999874
No 31
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=95.32 E-value=0.15 Score=42.80 Aligned_cols=47 Identities=19% Similarity=0.139 Sum_probs=37.1
Q ss_pred CceeEeeCCCCCCCceEEccCCCCcEEEehhhhHHHHhCCcccccceeecC-CCCCeEEEEeeec
Q 023505 204 PGLQVCREKFNQPRLWEDVPNIKGALIVNIGDMMERWTNCLFRSTLHRVMS-SGQERYSVIICFL 267 (281)
Q Consensus 204 ~GLqv~~~~~~~~~~w~~v~~~~g~~ivn~Gd~l~~~T~G~~ks~~HRV~~-~~~~R~S~~~f~~ 267 (281)
|.|.+.+..+ -..|.|..|.+|+.-. +.+|+|.. ....|+++.++.+
T Consensus 130 GEl~~~~~~g-----~~~Vkp~aG~~vlfps------------~~lH~v~pVt~G~R~~~~~Wi~ 177 (226)
T PRK05467 130 GELVIEDTYG-----EHRVKLPAGDLVLYPS------------TSLHRVTPVTRGVRVASFFWIQ 177 (226)
T ss_pred CceEEecCCC-----cEEEecCCCeEEEECC------------CCceeeeeccCccEEEEEecHH
Confidence 4588876655 4789999999998874 48899997 5558999998865
No 32
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=94.83 E-value=0.085 Score=42.30 Aligned_cols=67 Identities=16% Similarity=0.044 Sum_probs=48.6
Q ss_pred cccccCccC----CCccEEecC----CCCceeEeeC-----CCCCCCceEEccCCCCcEEEehhhhHHHHhCCcccccce
Q 023505 184 CGASAHSDY----GMITLLATD----GVPGLQVCRE-----KFNQPRLWEDVPNIKGALIVNIGDMMERWTNCLFRSTLH 250 (281)
Q Consensus 184 ~~~~~H~D~----~~lTll~~~----~~~GLqv~~~-----~~~~~~~w~~v~~~~g~~ivn~Gd~l~~~T~G~~ks~~H 250 (281)
.....|+|. ..+|++..- ..+|+.+... .| +.|.+.+|++++..|-.+ .|
T Consensus 85 r~t~~HrD~~~~~~~~~~~~t~~~gd~~~g~l~lp~~~~~~~g------~~~~~~~GtVl~~~~~~~-----------~H 147 (171)
T PF12851_consen 85 RCTHSHRDTHNMPNGYDVLCTLGRGDYDGGRLELPGLDPNILG------VAFAYQPGTVLIFCAKRE-----------LH 147 (171)
T ss_pred cCccceecCCCCCCCeEEEEecCCccccCceEeccccccccCC------EEEecCCCcEEEEcccce-----------ee
Confidence 357889998 667766642 2467777777 66 899999999999998432 45
Q ss_pred eecC---C---CCCeEEEEeeec
Q 023505 251 RVMS---S---GQERYSVIICFL 267 (281)
Q Consensus 251 RV~~---~---~~~R~S~~~f~~ 267 (281)
-|.. | ..+|+|++||.|
T Consensus 148 gvtpv~~~~~~~~~R~slvfy~h 170 (171)
T PF12851_consen 148 GVTPVESPNRNHGTRISLVFYQH 170 (171)
T ss_pred ecCcccCCCCCCCeEEEEEEEeE
Confidence 5543 2 249999999986
No 33
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=94.24 E-value=0.49 Score=37.94 Aligned_cols=106 Identities=19% Similarity=0.104 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHcCCChhhhcccCCcCCcccceeecccCCCCCCCCCCccccccCccCC--------CccEEec--C-CC
Q 023505 135 AGRRLIHLIALALNLNEDFFEKVGALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYG--------MITLLAT--D-GV 203 (281)
Q Consensus 135 ~~~~ll~~l~~~lgl~~~~~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~~~H~D~~--------~lTll~~--~-~~ 203 (281)
+...|.+.+...++++.. .......+++.+|.+- -...+|.|.. .+|+++. + ..
T Consensus 60 ~~~~l~~~i~~~~~~~~~-------~~~~~~~~~~~~Y~~g--------~~~~~H~D~~~~~~~~~r~~T~~~yLn~~~~ 124 (178)
T smart00702 60 VIERIRQRLADFLGLLRG-------LPLSAEDAQVARYGPG--------GHYGPHVDNFEDDENGDRIATFLLYLNDVEE 124 (178)
T ss_pred HHHHHHHHHHHHHCCCch-------hhccCcceEEEEECCC--------CcccCcCCCCCCCCCCCeEEEEEEEeccCCc
Confidence 344455555555665421 1123446788899752 1367888865 5776664 2 23
Q ss_pred C-ceeEeeCCCCCCCceEEccCCCCcEEEehhhhHHHHhCCcccccceeecCC-CCCeEEEEeeec
Q 023505 204 P-GLQVCREKFNQPRLWEDVPNIKGALIVNIGDMMERWTNCLFRSTLHRVMSS-GQERYSVIICFL 267 (281)
Q Consensus 204 ~-GLqv~~~~~~~~~~w~~v~~~~g~~ivn~Gd~l~~~T~G~~ks~~HRV~~~-~~~R~S~~~f~~ 267 (281)
| .|.+...+. .....|.|..|.+|+.-... +..+|.|... ...|+++..+++
T Consensus 125 GG~~~f~~~~~---~~~~~v~P~~G~~v~f~~~~---------~~~~H~v~pv~~G~r~~~~~W~~ 178 (178)
T smart00702 125 GGELVFPGLGL---MVCATVKPKKGDLLFFPSGR---------GRSLHGVCPVTRGSRWAITGWIR 178 (178)
T ss_pred CceEEecCCCC---ccceEEeCCCCcEEEEeCCC---------CCccccCCcceeCCEEEEEEEEC
Confidence 3 466654432 12568999999888865321 1788999873 358999998864
No 34
>PRK08130 putative aldolase; Validated
Probab=88.74 E-value=0.7 Score=38.39 Aligned_cols=36 Identities=25% Similarity=0.432 Sum_probs=32.4
Q ss_pred CCcEEeCCCcchHHHHHHHHHHHHhcceEEEEecCC
Q 023505 6 QLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGV 41 (281)
Q Consensus 6 ~lPvIDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi 41 (281)
.||++++..++..++++.+.+++.+...+.|.|||+
T Consensus 127 ~i~v~~y~~~g~~~la~~~~~~l~~~~~vll~nHGv 162 (213)
T PRK08130 127 HVPLIPYYRPGDPAIAEALAGLAARYRAVLLANHGP 162 (213)
T ss_pred ccceECCCCCChHHHHHHHHHHhccCCEEEEcCCCC
Confidence 589999887777889999999999999999999995
No 35
>PRK08333 L-fuculose phosphate aldolase; Provisional
Probab=88.11 E-value=0.72 Score=37.37 Aligned_cols=36 Identities=17% Similarity=0.484 Sum_probs=32.3
Q ss_pred CCcEEeCCCcchHHHHHHHHHHHHhcceEEEEecCC
Q 023505 6 QLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGV 41 (281)
Q Consensus 6 ~lPvIDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi 41 (281)
.||++++..++.+++++.+.+++.+...+.|.|||+
T Consensus 120 ~v~v~~~~~~g~~~la~~~~~~l~~~~~vll~nHGv 155 (184)
T PRK08333 120 KIPILPFRPAGSVELAEQVAEAMKEYDAVIMERHGI 155 (184)
T ss_pred CEeeecCCCCCcHHHHHHHHHHhccCCEEEEcCCCC
Confidence 689999887677889999999999999999999995
No 36
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=87.31 E-value=9.2 Score=31.77 Aligned_cols=80 Identities=18% Similarity=0.183 Sum_probs=46.4
Q ss_pred eeecccCCCCCCCCCCccccccCccCC-----CccEEecCCCCc-eeEeeCCCCCCCceEEccCCCCcEEEehhhhHHHH
Q 023505 167 LRLLHYPGELVSSNQEVCGASAHSDYG-----MITLLATDGVPG-LQVCREKFNQPRLWEDVPNIKGALIVNIGDMMERW 240 (281)
Q Consensus 167 lr~~~Yp~~~~~~~~~~~~~~~H~D~~-----~lTll~~~~~~G-Lqv~~~~~~~~~~w~~v~~~~g~~ivn~Gd~l~~~ 240 (281)
.-+|+|.+ +. +++.|.|-. ..-+-++-+.+. +.+..... .+.+..+....|.++|.-|++ +.|
T Consensus 118 ~LvN~Y~~-------G~-~mg~H~D~~E~~~~~pI~SvSLG~~~~F~~~~~~~--~~~~~~l~L~~Gdllvm~G~s-r~~ 186 (213)
T PRK15401 118 CLINRYAP-------GA-KLSLHQDKDERDFRAPIVSVSLGLPAVFQFGGLKR--SDPLQRILLEHGDVVVWGGPS-RLR 186 (213)
T ss_pred EEEEeccC-------cC-ccccccCCCcccCCCCEEEEeCCCCeEEEecccCC--CCceEEEEeCCCCEEEECchH-hhe
Confidence 55788873 23 799999942 111111112222 22321111 134899999999999999985 332
Q ss_pred hCCcccccceeecC--C------CCCeEEEEee
Q 023505 241 TNCLFRSTLHRVMS--S------GQERYSVIIC 265 (281)
Q Consensus 241 T~G~~ks~~HRV~~--~------~~~R~S~~~f 265 (281)
+|.|.. + +..|+++.|-
T Consensus 187 --------~HgVp~~~~~~~p~~g~~RINLTFR 211 (213)
T PRK15401 187 --------YHGILPLKAGEHPLTGECRINLTFR 211 (213)
T ss_pred --------eccCCcCCCCcCCCCCCCeEEEEeE
Confidence 355533 1 3479999873
No 37
>PRK05874 L-fuculose-phosphate aldolase; Validated
Probab=85.84 E-value=1.1 Score=37.29 Aligned_cols=36 Identities=11% Similarity=0.193 Sum_probs=32.2
Q ss_pred CCcEEeCCCcchHHHHHHHHHHHHhcceEEEEecCC
Q 023505 6 QLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGV 41 (281)
Q Consensus 6 ~lPvIDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi 41 (281)
.+|++++..++..++++.+.+++.+...+.|.|||+
T Consensus 127 ~v~~~~y~~~gs~ela~~v~~~l~~~~~vlL~nHGv 162 (217)
T PRK05874 127 DVRCTEYAASGTPEVGRNAVRALEGRAAALIANHGL 162 (217)
T ss_pred ceeeecCCCCCcHHHHHHHHHHhCcCCEEEEcCCCC
Confidence 588888886677889999999999999999999995
No 38
>PRK06755 hypothetical protein; Validated
Probab=83.19 E-value=1.3 Score=36.81 Aligned_cols=36 Identities=11% Similarity=0.127 Sum_probs=30.9
Q ss_pred CCcEEeCCCcchHHHHHHHHHHHHhcceEEEEecCC
Q 023505 6 QLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGV 41 (281)
Q Consensus 6 ~lPvIDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi 41 (281)
+||+|++......++++.+.+++++...+.|.|||+
T Consensus 136 ~IPiv~~~~~~~~~la~~~~~~~~~~~avLl~~HGv 171 (209)
T PRK06755 136 TIPIVEDEKKFADLLENNVPNFIEGGGVVLVHNYGM 171 (209)
T ss_pred EEEEEeCCCchhHHHHHHHHhhccCCCEEEEcCCCe
Confidence 699999876666778888888888899999999995
No 39
>PRK08087 L-fuculose phosphate aldolase; Provisional
Probab=82.77 E-value=1.9 Score=35.92 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=32.0
Q ss_pred CCcEEeCCCcchHHHHHHHHHHHHhcceEEEEecCC
Q 023505 6 QLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGV 41 (281)
Q Consensus 6 ~lPvIDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi 41 (281)
.||++.+...+..++++.+.+++.+...+.|.|||+
T Consensus 122 ~v~~~~y~~~gs~~la~~~~~~l~~~~~vLl~nHGv 157 (215)
T PRK08087 122 SIPCAPYATFGTRELSEHVALALKNRKATLLQHHGL 157 (215)
T ss_pred CceeecCCCCCCHHHHHHHHHHhCcCCEEEecCCCC
Confidence 589999887777888999999999999999999995
No 40
>PF07350 DUF1479: Protein of unknown function (DUF1479); InterPro: IPR010856 This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.; PDB: 2CSG_A 2DBI_A 2DBN_A.
Probab=82.41 E-value=1 Score=41.12 Aligned_cols=55 Identities=15% Similarity=0.142 Sum_probs=38.4
Q ss_pred CCCCcEEeCCCcchHHHHHHHHHHHHhcceEEEEecCCCHHHHHHHHHHHHHhhcC
Q 023505 4 ALQLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSL 59 (281)
Q Consensus 4 ~~~lPvIDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~l 59 (281)
..-||.|||++-......+.+.+.+++.|++.|+|. |+++......+...+|...
T Consensus 47 ~~~IP~i~f~di~~~~~~~~~~~~ir~rG~~VIR~V-vp~~ea~~w~~e~~~Y~~~ 101 (416)
T PF07350_consen 47 SSIIPEIDFADIENGGVSEEFLAEIRRRGCVVIRGV-VPREEALAWKQELKEYLKA 101 (416)
T ss_dssp --SS-EEEHHHHHCT---HHHHHHHHHHSEEEECTS-S-HHHHHHHHHHHHHHHHH
T ss_pred CCCCceeeHHHHhCCCCCHHHHHHHHhcCEEEEeCC-CCHHHHHHHHHHHHHHHHh
Confidence 457999999854444445778888899999999987 7888888888777777653
No 41
>PRK08660 L-fuculose phosphate aldolase; Provisional
Probab=82.39 E-value=2.1 Score=34.53 Aligned_cols=35 Identities=17% Similarity=0.181 Sum_probs=30.1
Q ss_pred CCcEEeCCCcchHHHHHHHHHHHHhcceEEEEecCC
Q 023505 6 QLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGV 41 (281)
Q Consensus 6 ~lPvIDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi 41 (281)
+||++ +..++..++++.+.+++.+.-.+.|.|||+
T Consensus 115 ~ipv~-~~~~~~~~la~~v~~~l~~~~~vll~nHG~ 149 (181)
T PRK08660 115 TIPVV-GGDIGSGELAENVARALSEHKGVVVRGHGT 149 (181)
T ss_pred CEeEE-eCCCCCHHHHHHHHHHHhhCCEEEEcCCCc
Confidence 58888 555667788999999999999999999995
No 42
>PRK06833 L-fuculose phosphate aldolase; Provisional
Probab=82.13 E-value=1.8 Score=35.97 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=31.4
Q ss_pred CCcEEeCCCcchHHHHHHHHHHHHhcceEEEEecCC
Q 023505 6 QLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGV 41 (281)
Q Consensus 6 ~lPvIDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi 41 (281)
.||++++..++..++++.+.+++.+...+.|.|||+
T Consensus 124 ~i~~~~y~~~gs~~la~~v~~~l~~~~~vll~nHGv 159 (214)
T PRK06833 124 NVRCAEYATFGTKELAENAFEAMEDRRAVLLANHGL 159 (214)
T ss_pred CeeeccCCCCChHHHHHHHHHHhCcCCEEEECCCCC
Confidence 578888877777888999999999999999999995
No 43
>PF00596 Aldolase_II: Class II Aldolase and Adducin N-terminal domain; InterPro: IPR001303 This entry represents the alpha/beta/alpha domain found in class II aldolases and adducin, usually at the N terminus. These proteins form part of a family that includes: rhamnulose-1-phosphate aldolase (4.1.2.19 from EC), L-fuculose phosphate aldolase (4.1.2.17 from EC) [, ] that is involved in the third step in fucose metabolism, L-ribulose- 5-phosphate 4-epimerase (5.1.3.4 from EC) involved in the third step of L-arabinose catabolism, a probable sugar isomerase SgbE, hypothetical proteins and the metazoan adducins which have not been ascribed any enzymatic function but which play a role in cell membrane cytoskeleton organisation. Adducins are members of the Ig superfamily and encode cell surface sialoglycoproteins expressed by cytokine-activated endothelium. This type I membrane protein mediates leukocyte-endothelial cell adhesion and signal transduction, and may play a role in the development of artherosclerosis and rheumatoid arthritis. Adducin is a cell-membrane skeletal protein that was first purified from human erythrocytes and subsequently isolated from bovine brain membranes. Isoforms of this protein have been detected in lung, kidney, testes and liver. Erythrocyte adducin is a 200kDa heterodimer protein, composed of alpha and beta subunits, present at about 30,000 copies per cell. It binds with high affinity to Ca(2+)/calmodulin and is a substrate for protein kinases A and C. Both alpha-adducin and beta-adducin show alternative splicing. Thus, there may be several different heterodimeric or homodimeric forms of adducin, each with a different functional specificity. It is thought to play a role in assembly of the spectrin-actin lattice that underlies the plasma membrane []. Missense mutations in both the alpha- and beta-adducin genes that alter amino acids that are normally phosphorylated have been associated with the regulation of blood pressure in the Milan hypertensive strain (MHS) of rats. Gamma adducin was isolated from human foetal brain []. It shows a high degree of similarity to the alpha and beta adducins.; GO: 0046872 metal ion binding; PDB: 2V9N_B 1GT7_B 2V9O_E 2V9M_B 2V9F_A 2UYV_A 1OJR_A 2V9G_C 2V29_B 2V9I_A ....
Probab=79.70 E-value=1.1 Score=36.20 Aligned_cols=37 Identities=32% Similarity=0.408 Sum_probs=31.4
Q ss_pred CCCcEEeCCCcchHHHHHHHHHHHH-hcceEEEEecCC
Q 023505 5 LQLPVIDLSSPDRLSTAKSIRQACI-DYGFFYLVNHGV 41 (281)
Q Consensus 5 ~~lPvIDl~~~~~~~~~~~l~~A~~-~~Gff~l~nhgi 41 (281)
..+|++++......++++.+.+++. +...+.+.|||+
T Consensus 122 ~~v~~~~~~~~~~~~l~~~i~~~l~~~~~~vll~nHG~ 159 (184)
T PF00596_consen 122 GEVPVVPYAPPGSEELAEAIAEALGEDRKAVLLRNHGV 159 (184)
T ss_dssp SCEEEE-THSTTCHHHHHHHHHHHTCTSSEEEETTTEE
T ss_pred ccceeeccccccchhhhhhhhhhhcCCceEEeecCCce
Confidence 5789999977666777899999999 889999999994
No 44
>PRK03634 rhamnulose-1-phosphate aldolase; Provisional
Probab=79.30 E-value=2.7 Score=36.45 Aligned_cols=36 Identities=11% Similarity=0.186 Sum_probs=31.8
Q ss_pred CCcEEeCCCcchHHHHHHHHHHHHhcceEEEEecCC
Q 023505 6 QLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGV 41 (281)
Q Consensus 6 ~lPvIDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi 41 (281)
.||++.+..++..++++.+.+++.+...+.|.|||+
T Consensus 179 ~i~vvpy~~pgs~eLa~~v~~~l~~~~avLL~nHGv 214 (274)
T PRK03634 179 GVGIVPWMVPGTDEIGQATAEKMQKHDLVLWPKHGV 214 (274)
T ss_pred ceeEecCCCCCCHHHHHHHHHHhccCCEEEEcCCCC
Confidence 478888887777889999999999999999999995
No 45
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=79.03 E-value=2.9 Score=33.82 Aligned_cols=80 Identities=21% Similarity=0.210 Sum_probs=43.6
Q ss_pred ceeecccCCCCCCCCCCccccccCccCCCc---cEEec--CCC-CceeEeeCCCCCCCceEEccCCCCcEEEehhhhHHH
Q 023505 166 FLRLLHYPGELVSSNQEVCGASAHSDYGMI---TLLAT--DGV-PGLQVCREKFNQPRLWEDVPNIKGALIVNIGDMMER 239 (281)
Q Consensus 166 ~lr~~~Yp~~~~~~~~~~~~~~~H~D~~~l---Tll~~--~~~-~GLqv~~~~~~~~~~w~~v~~~~g~~ivn~Gd~l~~ 239 (281)
..-+|+|.+ +. ++++|.|...+ ..+.. =+. .-+.+...+. .+..+.+...+|+++|+-|++=..
T Consensus 98 ~~liN~Y~~-------g~-~i~~H~D~~~~~~~~~I~slSLG~~~~~~f~~~~~--~~~~~~~~L~~gsl~vm~g~~r~~ 167 (194)
T PF13532_consen 98 QCLINYYRD-------GS-GIGPHSDDEEYGFGPPIASLSLGSSRVFRFRNKSD--DDEPIEVPLPPGSLLVMSGEARYD 167 (194)
T ss_dssp EEEEEEESS-------TT--EEEE---TTC-CCSEEEEEEEES-EEEEEEECGG--TS-EEEEEE-TTEEEEEETTHHHH
T ss_pred EEEEEecCC-------CC-CcCCCCCcccccCCCcEEEEEEccCceEEEeeccC--CCccEEEEcCCCCEEEeChHHhhh
Confidence 466888874 34 79999998743 22211 111 2344444321 145999999999999999987444
Q ss_pred HhCCcccccceeecCC----------CCCeEEEEe
Q 023505 240 WTNCLFRSTLHRVMSS----------GQERYSVII 264 (281)
Q Consensus 240 ~T~G~~ks~~HRV~~~----------~~~R~S~~~ 264 (281)
| |.|... ...|+||.|
T Consensus 168 ~---------H~I~~~~~~~~~~~~~~~~RislTf 193 (194)
T PF13532_consen 168 W---------HGIPPVKKDTHPSHYVRGRRISLTF 193 (194)
T ss_dssp E---------EEE-S-SCEEEESTEE-S-EEEEEE
T ss_pred e---------eEcccccCCccccccCCCCEEEEEe
Confidence 4 555441 237999987
No 46
>TIGR02624 rhamnu_1P_ald rhamnulose-1-phosphate aldolase. Members of this family are the enzyme RhaD, rhamnulose-1-phosphate aldolase.
Probab=77.90 E-value=3 Score=36.08 Aligned_cols=36 Identities=11% Similarity=0.210 Sum_probs=32.0
Q ss_pred CCcEEeCCCcchHHHHHHHHHHHHhcceEEEEecCC
Q 023505 6 QLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGV 41 (281)
Q Consensus 6 ~lPvIDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi 41 (281)
.||++.+..++..++++.+.+++++...+.|.|||+
T Consensus 177 ~i~vvp~~~pGs~eLA~~v~~~l~~~~avLL~nHGv 212 (270)
T TIGR02624 177 GVGIIPWMVPGTNEIGEATAEKMKEHRLVLWPHHGI 212 (270)
T ss_pred ccccccCcCCCCHHHHHHHHHHhccCCEEEEcCCCC
Confidence 478888877788899999999999999999999995
No 47
>TIGR01086 fucA L-fuculose phosphate aldolase. Members of this family are L-fuculose phosphate aldolase from various Proteobacteria, encoded in fucose utilization operons. Homologs in other bacteria given similar annotation may share extensive sequence similarity but are not experimenally characterized and are not found in apparent fucose utilization operons; we consider their annotation as L-fuculose phosphate aldolase to be tenuous. This model has been narrowed in scope from the previous version.
Probab=75.85 E-value=3.7 Score=34.11 Aligned_cols=36 Identities=14% Similarity=0.308 Sum_probs=31.0
Q ss_pred CCcEEeCCCcchHHHHHHHHHHHHhcceEEEEecCC
Q 023505 6 QLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGV 41 (281)
Q Consensus 6 ~lPvIDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi 41 (281)
.||++.+...+..++++.+.+++.+...+.|.|||+
T Consensus 121 ~i~~v~y~~~gs~~la~~v~~~~~~~~~vLL~nHG~ 156 (214)
T TIGR01086 121 NIPCVPYATFGSTKLASEVVAGILKSKAILLLHHGL 156 (214)
T ss_pred CccccCCCCCChHHHHHHHHHHhhhCCEEehhcCCC
Confidence 478888877667788999999999999999999995
No 48
>PRK06357 hypothetical protein; Provisional
Probab=74.39 E-value=5.5 Score=33.17 Aligned_cols=36 Identities=22% Similarity=0.493 Sum_probs=29.2
Q ss_pred CCcEEeCCCcchHHHHHHHHHHHHhc------ceEEEEecCC
Q 023505 6 QLPVIDLSSPDRLSTAKSIRQACIDY------GFFYLVNHGV 41 (281)
Q Consensus 6 ~lPvIDl~~~~~~~~~~~l~~A~~~~------Gff~l~nhgi 41 (281)
.+|++.+...+.+++++.+.+++.+. ..+.|.|||+
T Consensus 130 ~i~~~p~~~~gs~ela~~v~~~l~~~~~~~~~~~vLl~nHGv 171 (216)
T PRK06357 130 KIPTLPFAPATSPELAEIVRKHLIELGDKAVPSAFLLNSHGI 171 (216)
T ss_pred CcceecccCCCcHHHHHHHHHHHhhcCcccCCCEEEECCCCC
Confidence 47888887666778889998888875 5999999995
No 49
>PRK06557 L-ribulose-5-phosphate 4-epimerase; Validated
Probab=72.90 E-value=4.2 Score=33.91 Aligned_cols=37 Identities=22% Similarity=0.159 Sum_probs=31.1
Q ss_pred CCCcEEeCCCcchHHHHHHHHHHH--HhcceEEEEecCC
Q 023505 5 LQLPVIDLSSPDRLSTAKSIRQAC--IDYGFFYLVNHGV 41 (281)
Q Consensus 5 ~~lPvIDl~~~~~~~~~~~l~~A~--~~~Gff~l~nhgi 41 (281)
..||++.+......++++++.+++ .+...+.|.|||+
T Consensus 129 ~~ip~~~y~~~g~~ela~~i~~~l~~~~~~~vll~nHG~ 167 (221)
T PRK06557 129 GPIPVGPFALIGDEAIGKGIVETLKGGRSPAVLMQNHGV 167 (221)
T ss_pred CCeeccCCcCCCcHHHHHHHHHHhCcCCCCEEEECCCCc
Confidence 368888887666778899999999 7888999999995
No 50
>cd00398 Aldolase_II Class II Aldolase and Adducin head (N-terminal) domain. Aldolases are ubiquitous enzymes catalyzing central steps of carbohydrate metabolism. Based on enzymatic mechanisms, this superfamily has been divided into two distinct classes (Class I and II). Class II enzymes are further divided into two sub-classes A and B. This family includes class II A aldolases and adducins which has not been ascribed any enzymatic function. Members of this class are primarily bacterial and eukaryotic in origin and include L-fuculose-1-phosphate, L-rhamnulose-1-phosphate aldolases and L-ribulose-5-phosphate 4-epimerases. They all share the ability to promote carbon-carbon bond cleavage and stabilize enolate intermediates using divalent cations.
Probab=70.19 E-value=4.1 Score=33.62 Aligned_cols=37 Identities=16% Similarity=0.181 Sum_probs=30.8
Q ss_pred CCCcEEeCCCc--chHHHHHHHHHHHHhcceEEEEecCC
Q 023505 5 LQLPVIDLSSP--DRLSTAKSIRQACIDYGFFYLVNHGV 41 (281)
Q Consensus 5 ~~lPvIDl~~~--~~~~~~~~l~~A~~~~Gff~l~nhgi 41 (281)
..||++++..+ ..++.++.+.+++.+.-.+.|.|||+
T Consensus 121 ~~ip~~~~~~~~~~~~~la~~~~~~l~~~~~vll~nHG~ 159 (209)
T cd00398 121 GDIPCTPYMTPETGEDEIGTQRALGFPNSKAVLLRNHGL 159 (209)
T ss_pred CCeeecCCcCCCccHHHHHHHHhcCCCcCCEEEEcCCCC
Confidence 46899999866 56677788888888889999999995
No 51
>TIGR03328 salvage_mtnB methylthioribulose-1-phosphate dehydratase. Members of this family are the methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway. This pathway allows methylthioadenosine, left over from polyamine biosynthesis, to be recycled to methionine.
Probab=70.07 E-value=6.7 Score=31.96 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=29.0
Q ss_pred CCcEEeCCCcchHHHHHHHHHHHH---hcceEEEEecCC
Q 023505 6 QLPVIDLSSPDRLSTAKSIRQACI---DYGFFYLVNHGV 41 (281)
Q Consensus 6 ~lPvIDl~~~~~~~~~~~l~~A~~---~~Gff~l~nhgi 41 (281)
.||+++. .++..++++.+.++++ +...+.|.|||+
T Consensus 126 ~vp~~~~-~~gs~ela~~~~~~l~~~~~~~avll~nHGv 163 (193)
T TIGR03328 126 TIPIFEN-TQDIARLADSVAPYLEAYPDVPGVLIRGHGL 163 (193)
T ss_pred EEeeecC-CCChHHHHHHHHHHHhcCCCCCEEEEcCCcc
Confidence 5888876 5566788999999996 478999999995
No 52
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=69.36 E-value=9.6 Score=27.31 Aligned_cols=36 Identities=22% Similarity=0.183 Sum_probs=23.3
Q ss_pred CceEEccCCCCcEEEehhhhHHHHhCCcccccceeecC-C-CCCeEEEEe
Q 023505 217 RLWEDVPNIKGALIVNIGDMMERWTNCLFRSTLHRVMS-S-GQERYSVII 264 (281)
Q Consensus 217 ~~w~~v~~~~g~~ivn~Gd~l~~~T~G~~ks~~HRV~~-~-~~~R~S~~~ 264 (281)
..+..++|.+|.+||.-+. ..|+|.. . ..+|+||+|
T Consensus 63 ~~~~~~~p~~G~lvlFPs~------------l~H~v~p~~~~~~Risisf 100 (101)
T PF13759_consen 63 SPYYIVEPEEGDLVLFPSW------------LWHGVPPNNSDEERISISF 100 (101)
T ss_dssp -SEEEE---TTEEEEEETT------------SEEEE----SSS-EEEEEE
T ss_pred CceEEeCCCCCEEEEeCCC------------CEEeccCcCCCCCEEEEEc
Confidence 3488999999999999874 4799987 3 349999997
No 53
>PRK07490 hypothetical protein; Provisional
Probab=67.32 E-value=7.6 Score=33.01 Aligned_cols=36 Identities=17% Similarity=0.073 Sum_probs=29.4
Q ss_pred CCcEE-eCCCcchHHHHHHHHHHHHhcceEEEEecCC
Q 023505 6 QLPVI-DLSSPDRLSTAKSIRQACIDYGFFYLVNHGV 41 (281)
Q Consensus 6 ~lPvI-Dl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi 41 (281)
.||++ ++......++++++.+++.+.-.+.|.|||+
T Consensus 133 ~v~~~~~y~~~~~~ela~~v~~~l~~~~avlL~nHG~ 169 (245)
T PRK07490 133 RVAVDTLYGGMALEEEGERLAGLLGDKRRLLMGNHGV 169 (245)
T ss_pred CeeeccCCCCcCcHHHHHHHHHHhCcCCEEEECCCCc
Confidence 46664 5665556788999999999999999999995
No 54
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=66.71 E-value=51 Score=26.31 Aligned_cols=62 Identities=15% Similarity=0.097 Sum_probs=36.3
Q ss_pred ceeecccCCCCCCCCCCccccccCccCCCcc---EE--ecCCCCceeEeeCCCCCCCceEEccCCCCcEEEehhhh
Q 023505 166 FLRLLHYPGELVSSNQEVCGASAHSDYGMIT---LL--ATDGVPGLQVCREKFNQPRLWEDVPNIKGALIVNIGDM 236 (281)
Q Consensus 166 ~lr~~~Yp~~~~~~~~~~~~~~~H~D~~~lT---ll--~~~~~~GLqv~~~~~~~~~~w~~v~~~~g~~ivn~Gd~ 236 (281)
..-+|+|++- -+++.|.|-.-+. .+ ++=+........... .++....+...+|.++|+-|+.
T Consensus 96 ~~LvN~Y~~G--------d~mg~H~D~~e~~~~~pI~SvSLG~~r~F~~~~~~-~~~~~~~l~L~sGsllvM~G~s 162 (169)
T TIGR00568 96 ACLVNRYAPG--------ATLSLHQDRDEPDLRAPLLSVSLGLPAIFLIGGLK-RNDPPKRLRLHSGDVVIMGGES 162 (169)
T ss_pred EEEEEeecCC--------CccccccccccccCCCCEEEEeCCCCEEEEecCCc-CCCceEEEEeCCCCEEEECCch
Confidence 4568889753 2699999963321 11 111222322222211 1244788999999999999973
No 55
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=62.46 E-value=13 Score=33.66 Aligned_cols=51 Identities=20% Similarity=0.074 Sum_probs=36.6
Q ss_pred CCCcEEeCCCc-chHHHHHHHHHHHHhcceEEEEecCCCHHHHHHHHHHHHHhhc
Q 023505 5 LQLPVIDLSSP-DRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFS 58 (281)
Q Consensus 5 ~~lPvIDl~~~-~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~ 58 (281)
.++|.||++.. ..++...++.+++.++|++.+.+-++.++. +.+.++.|-.
T Consensus 108 ~~~~~~d~~~~~~~~~~~~~~~~~l~~~G~v~~rg~~~~~~~---~~~~~~~~G~ 159 (366)
T TIGR02409 108 LSLPKFDHEAVMKDDSVLLDWLSAVRDVGIAVLKGAPTKPGA---VEKLGKRIGF 159 (366)
T ss_pred ccCCceeHHHHhCCHHHHHHHHHHHHhccEEEEeCCCCCHHH---HHHHHHHhcc
Confidence 56888998742 245567889999999999999998886654 3344444433
No 56
>PRK06754 mtnB methylthioribulose-1-phosphate dehydratase; Reviewed
Probab=61.75 E-value=9.4 Score=31.53 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=27.6
Q ss_pred CCcEEeCCCcchHHHHHHHHHHHH-hcceEEEEecCC
Q 023505 6 QLPVIDLSSPDRLSTAKSIRQACI-DYGFFYLVNHGV 41 (281)
Q Consensus 6 ~lPvIDl~~~~~~~~~~~l~~A~~-~~Gff~l~nhgi 41 (281)
.||+++.- .+.+++++.+.++++ +...+.|.|||+
T Consensus 137 ~vpv~~~~-~~~~eLa~~v~~~l~~~~~avLl~nHG~ 172 (208)
T PRK06754 137 HIPIIENH-ADIPTLAEEFAKHIQGDSGAVLIRNHGI 172 (208)
T ss_pred EEEEecCC-CCHHHHHHHHHHHhccCCcEEEECCCce
Confidence 47888632 235788999999998 889999999995
No 57
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=61.47 E-value=14 Score=30.45 Aligned_cols=34 Identities=26% Similarity=0.282 Sum_probs=28.2
Q ss_pred eEEccCCCCcEEEehhhhHHHHhCCcccccceeecCC--CCCeEEEEe
Q 023505 219 WEDVPNIKGALIVNIGDMMERWTNCLFRSTLHRVMSS--GQERYSVII 264 (281)
Q Consensus 219 w~~v~~~~g~~ivn~Gd~l~~~T~G~~ks~~HRV~~~--~~~R~S~~~ 264 (281)
|+.|.|.+|.+|+.-.. ..|+|... ..+|+|++|
T Consensus 161 ~~~v~P~~G~lvlFPS~------------L~H~v~p~~~~~~RISiSF 196 (201)
T TIGR02466 161 FVYVPPQEGRVLLFESW------------LRHEVPPNESEEERISVSF 196 (201)
T ss_pred cEEECCCCCeEEEECCC------------CceecCCCCCCCCEEEEEE
Confidence 88999999999998763 36998873 459999998
No 58
>PRK06661 hypothetical protein; Provisional
Probab=57.48 E-value=14 Score=31.04 Aligned_cols=36 Identities=14% Similarity=0.131 Sum_probs=27.6
Q ss_pred CCcEEeCCCcc--hHHHHHHHHHHHHhcceEEEEecCC
Q 023505 6 QLPVIDLSSPD--RLSTAKSIRQACIDYGFFYLVNHGV 41 (281)
Q Consensus 6 ~lPvIDl~~~~--~~~~~~~l~~A~~~~Gff~l~nhgi 41 (281)
.||..++.... ..+.++.+.+++.+...+.|.|||+
T Consensus 123 ~i~~~~~~~~~~~~~~~~~~~a~~l~~~~avll~nHG~ 160 (231)
T PRK06661 123 RISYHNYNSLALDADKQSSRLVNDLKQNYVMLLRNHGA 160 (231)
T ss_pred CceecCCCccccCchhHHHHHHHHhCCCCEEEECCCCC
Confidence 35666665332 2567889999999999999999995
No 59
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=55.67 E-value=21 Score=30.88 Aligned_cols=50 Identities=16% Similarity=0.245 Sum_probs=35.7
Q ss_pred CcEEeCCCcchHHHHHHHHHHHHhcceEEEEecCCCHHHHHHHHHHHHHhhcC
Q 023505 7 LPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSL 59 (281)
Q Consensus 7 lPvIDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~l 59 (281)
|-=+||+..-.++..++|.+++.++|++.+.|..+..+ ...+.++.|-.+
T Consensus 16 v~g~dl~~~l~~~~~~~l~~~l~~~Gvlvfr~q~l~~~---~~~~~~~~~G~~ 65 (277)
T PRK09553 16 ISGIDLTRPLSDNQFEQLYHALLRHQVLFFRDQPITPQ---QQRDLAARFGDL 65 (277)
T ss_pred EeCcccCCcCCHHHHHHHHHHHHHCCEEEECCCCCCHH---HHHHHHHHhCCC
Confidence 33366665434566888999999999999999988753 455555666543
No 60
>PRK05834 hypothetical protein; Provisional
Probab=53.94 E-value=18 Score=29.49 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=25.7
Q ss_pred CCcEEeCCCcch--HHHHHHHHHHHHhcc--eEEEEecCC
Q 023505 6 QLPVIDLSSPDR--LSTAKSIRQACIDYG--FFYLVNHGV 41 (281)
Q Consensus 6 ~lPvIDl~~~~~--~~~~~~l~~A~~~~G--ff~l~nhgi 41 (281)
+||++++...+. +..++.+.+++.+.. .+.|.|||+
T Consensus 121 ~ipv~~~~~~~~~~~~la~~v~~~l~~~~~~avLL~nHGv 160 (194)
T PRK05834 121 EISIYDPKDFDDWYERADTEILRYLQEKNKNFVVIKGYGV 160 (194)
T ss_pred eeeecCccccchHHHhHHHHHHHHHhhcCCCEEEEcCCcc
Confidence 477776654332 235677889998755 999999994
No 61
>PRK09220 methylthioribulose-1-phosphate dehydratase; Provisional
Probab=47.79 E-value=28 Score=28.65 Aligned_cols=47 Identities=13% Similarity=0.109 Sum_probs=30.4
Q ss_pred CCcEEeCCCcchHHHHHHHHHHHHhcc---eEEEEecCCC--HHHHHHHHHHH
Q 023505 6 QLPVIDLSSPDRLSTAKSIRQACIDYG---FFYLVNHGVE--EELISQMFNES 53 (281)
Q Consensus 6 ~lPvIDl~~~~~~~~~~~l~~A~~~~G---ff~l~nhgi~--~~~~~~~~~~~ 53 (281)
.||++.- ..+.+++++.+.+++.+.. .+.|.|||+- .+.+++++..+
T Consensus 134 ~vp~~~~-~~~~~eLa~~v~~~l~~~~~~~avlL~nHGvi~~G~~~~eA~~~~ 185 (204)
T PRK09220 134 VVPIFDN-DQDIARLAARVAPYLDAQPLRYGYLIRGHGLYCWGRDMAEARRHL 185 (204)
T ss_pred EEeeecC-CCCHHHHHHHHHHHHHhCCCCcEEEECCCceEEEcCCHHHHHHHH
Confidence 3455442 2245788999999999875 8999999951 22344444433
No 62
>PRK07044 aldolase II superfamily protein; Provisional
Probab=46.70 E-value=28 Score=29.67 Aligned_cols=36 Identities=22% Similarity=0.236 Sum_probs=27.7
Q ss_pred CCcEEeCCCcc-hHHHHHHHHHHHHhcceEEEEecCC
Q 023505 6 QLPVIDLSSPD-RLSTAKSIRQACIDYGFFYLVNHGV 41 (281)
Q Consensus 6 ~lPvIDl~~~~-~~~~~~~l~~A~~~~Gff~l~nhgi 41 (281)
.||++++.... ..+.++.+.+++.+...+.|.|||+
T Consensus 138 ~i~~~~y~~~~~~~e~~~~va~~l~~~~avLL~nHGv 174 (252)
T PRK07044 138 RLAYHDYEGIALDLDEGERLVADLGDKPAMLLRNHGL 174 (252)
T ss_pred CceeeCCCCCcCCHHHHHHHHHHhccCCEEEECCCCc
Confidence 47777775322 3556788999999999999999995
No 63
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=45.03 E-value=1.1e+02 Score=27.13 Aligned_cols=47 Identities=15% Similarity=0.091 Sum_probs=30.2
Q ss_pred EEccCCCCcEEEehhhhHHHHhCCc-ccccceeecC-CCCCeEEEEeeecCCC
Q 023505 220 EDVPNIKGALIVNIGDMMERWTNCL-FRSTLHRVMS-SGQERYSVIICFLSHL 270 (281)
Q Consensus 220 ~~v~~~~g~~ivn~Gd~l~~~T~G~-~ks~~HRV~~-~~~~R~S~~~f~~p~~ 270 (281)
+.|.|..|..|+.-= ...||. =..++|.... -..+++++..+++-..
T Consensus 206 l~VkPkkG~ALlF~n----l~~dG~~D~~SlHagcPVi~G~Kw~atkWi~~~~ 254 (310)
T PLN00052 206 LAVKPVKGDAVLFFS----LHIDGVPDPLSLHGSCPVIEGEKWSAPKWIHIRS 254 (310)
T ss_pred eEeccCcceEEEEec----cCCCCCCCcccccCCCeeecCeEEEEEEeeeccc
Confidence 788999998777543 123443 3567888765 2336888887777643
No 64
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=44.89 E-value=1.3e+02 Score=24.60 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=24.1
Q ss_pred EEccCCCCcEEEehhhhHHHHhCCcccccceeecC-CCCCeEEEEeeec
Q 023505 220 EDVPNIKGALIVNIGDMMERWTNCLFRSTLHRVMS-SGQERYSVIICFL 267 (281)
Q Consensus 220 ~~v~~~~g~~ivn~Gd~l~~~T~G~~ks~~HRV~~-~~~~R~S~~~f~~ 267 (281)
..|+.+.|.+|+.-+ .++|+|.. .-..|+.+.|+++
T Consensus 144 h~VklPAGdLVlypS------------tSlH~VtPVTRg~R~asffW~q 180 (229)
T COG3128 144 HRVKLPAGDLVLYPS------------TSLHEVTPVTRGERFASFFWIQ 180 (229)
T ss_pred eEEeccCCCEEEccc------------ccceeccccccCceEEEeeehH
Confidence 555555577666443 36799886 4458998888765
No 65
>PRK08193 araD L-ribulose-5-phosphate 4-epimerase; Reviewed
Probab=42.71 E-value=43 Score=28.13 Aligned_cols=36 Identities=17% Similarity=0.135 Sum_probs=26.3
Q ss_pred CCcEEeCCCc------chHHHHHHHHHHHHhc-------ceEEEEecCC
Q 023505 6 QLPVIDLSSP------DRLSTAKSIRQACIDY-------GFFYLVNHGV 41 (281)
Q Consensus 6 ~lPvIDl~~~------~~~~~~~~l~~A~~~~-------Gff~l~nhgi 41 (281)
.||++++... ...+.++.+.+++.+. ..+.|.|||+
T Consensus 124 ~ip~~~~~~~~~~~~~~~~~~~~~ia~~l~~~~~~~~~~~avLl~nHG~ 172 (231)
T PRK08193 124 DIPCTRKMTDEEINGEYEWETGKVIVETFEKRGIDPAAVPGVLVHSHGP 172 (231)
T ss_pred CcceecCCCcccccccchhhHHHHHHHHHhhccCCcccCCEEEEcCCCc
Confidence 5888876422 2246788888888864 5899999995
No 66
>PF11243 DUF3045: Protein of unknown function (DUF3045); InterPro: IPR021405 This entry is represented by Bacteriophage T4, Gp30.1; it is a family of uncharacterised viral proteins.
Probab=41.94 E-value=25 Score=24.04 Aligned_cols=21 Identities=24% Similarity=0.660 Sum_probs=17.1
Q ss_pred HHHHHHHHhcceEEEEecCCC
Q 023505 22 KSIRQACIDYGFFYLVNHGVE 42 (281)
Q Consensus 22 ~~l~~A~~~~Gff~l~nhgi~ 42 (281)
+.|...|.+.||.|++.|-+.
T Consensus 36 ~~if~eCVeqGFiYVs~~~~~ 56 (89)
T PF11243_consen 36 EPIFKECVEQGFIYVSKYWMD 56 (89)
T ss_pred cHHHHHHHhcceEEEEeeeec
Confidence 457889999999999877653
No 67
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=40.93 E-value=48 Score=29.92 Aligned_cols=49 Identities=24% Similarity=0.318 Sum_probs=34.3
Q ss_pred CCcEEeCCC-cc-hHHHHHHHHHHHHhcceEEEEecCCCHHHHHHHHHHHHHhh
Q 023505 6 QLPVIDLSS-PD-RLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFF 57 (281)
Q Consensus 6 ~lPvIDl~~-~~-~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF 57 (281)
.+|.+|+.. .. .++...++.+++.++|++.++|.++.++... +.++.|.
T Consensus 100 ~~~~~~~~~~~~~~d~~l~~~l~~l~~~G~v~~~g~~~~~~~~~---~~a~riG 150 (362)
T TIGR02410 100 KDPSVHFKTTYDHTDSTLKSFSKNIYKYGFTFVDNVPVTPEATE---KLCERIS 150 (362)
T ss_pred cCCceeHHHHhccCHHHHHHHHHHHHhhCEEEEcCCCCCHHHHH---HHHHHhc
Confidence 457788762 12 2456888999999999999999988765443 4444443
No 68
>PF01471 PG_binding_1: Putative peptidoglycan binding domain; InterPro: IPR002477 This entry represents peptidoglycan binding domain (PGBD), as well as related domains that share the same structure. PGBD may have a general peptidoglycan binding function, has a core structure consisting of a closed, three-helical bundle with a left-handed twist. It is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [, , ]. Examples are: Muramoyl-pentapeptide carboxypeptidase (3.4.17.8 from EC) N-acetylmuramoyl-L-alanine amidase cwlA precursor (cell wall hydrolase, autolysin, 3.5.1.28 from EC) Autolytic lysozyme (1,4-beta-N-acetylmuramidase, autolysin, 3.2.1.17 from EC) Membrane-bound lytic murein transglycosylase B Zinc-containing D-alanyl-D-alanine-cleaving carboxypeptidase, VanX []. Many of the proteins having this domain are as yet uncharacterised. However, some are known to belong to MEROPS peptidase family M15 (clan MD), subfamily M15A metallopeptidases. A number of the proteins belonging to subfamily M15A are non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Eukaryotic enzymes can contain structurally similar PGBD-like domains. Matrix metalloproteinases (MMP), which catalyse extracellular matrix degradation, have N-terminal domains that resemble PGBD. Examples are gelatinase A (MMP-2), which degrades type IV collagen [], stromelysin-1 (MMP-3), which plays a role in arthritis and tumour invasion [, ], and gelatinase B (MMP-9) secreted by neutrophils as part of the innate immune defence mechanism []. Several MMPs are implicated in cancer progression, since degradation of the extracellular matrix is an essential step in the cascade of metastasis [].; GO: 0008152 metabolic process; PDB: 1L6J_A 3BKH_A 3BKV_A 1GXD_A 1EAK_D 1CK7_A 1SLM_A 1LBU_A 1SU3_B.
Probab=39.86 E-value=29 Score=21.63 Aligned_cols=42 Identities=14% Similarity=0.142 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhcceEEEEecCCCHHHHHHHHHHHHHhhcCC
Q 023505 19 STAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQ 60 (281)
Q Consensus 19 ~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp 60 (281)
+.++.+...|...||.-....|+-......++...+..+.++
T Consensus 3 ~~v~~lq~~L~~~gy~~~~~~g~~~~~t~~Av~~fQ~~~gL~ 44 (57)
T PF01471_consen 3 PDVKALQQYLNRLGYYPGPVDGIFDPETREAVKAFQKANGLP 44 (57)
T ss_dssp HHHHHHHHHHHHTTTT-SSTTSBSHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCcCHHHHHHHHHHHHHcCcC
Confidence 347789999999999955555666667777777777777765
No 69
>PRK06486 hypothetical protein; Provisional
Probab=38.76 E-value=41 Score=28.93 Aligned_cols=36 Identities=25% Similarity=0.312 Sum_probs=26.9
Q ss_pred CCcEEe-CCC-cchHHHHHHHHHHHHhcceEEEEecCC
Q 023505 6 QLPVID-LSS-PDRLSTAKSIRQACIDYGFFYLVNHGV 41 (281)
Q Consensus 6 ~lPvID-l~~-~~~~~~~~~l~~A~~~~Gff~l~nhgi 41 (281)
.+|++. +.. ....++++.+.+++.+...+.|.|||+
T Consensus 148 ~i~~~~~~~~~~~s~ela~~va~al~~~~avLL~nHG~ 185 (262)
T PRK06486 148 RTAVDEDYNGLALDAAEGDRIARAMGDADIVFLKNHGV 185 (262)
T ss_pred CeeeccCCCCccCchhHHHHHHHHhCcCCEEEECCCCC
Confidence 355553 421 224678999999999999999999995
No 70
>PF07283 TrbH: Conjugal transfer protein TrbH; InterPro: IPR010837 This entry represents TrbH, a bacterial conjugal transfer protein approximately 150 residues long. TrbH contains a putative membrane lipoprotein lipid attachment site [].
Probab=36.79 E-value=40 Score=25.34 Aligned_cols=33 Identities=12% Similarity=0.173 Sum_probs=26.1
Q ss_pred EEeCCCcchHHHHHHHHHHHHhcceEEEEecCC
Q 023505 9 VIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGV 41 (281)
Q Consensus 9 vIDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi 41 (281)
+|.|...+.+.....|.++|+.+||-.+.++.-
T Consensus 26 t~~L~q~~~d~Fg~aL~~~LR~~GYaV~e~~~~ 58 (121)
T PF07283_consen 26 TFELKQKDPDPFGQALENALRAKGYAVIEDDPP 58 (121)
T ss_pred EEEEEcCCCChHHHHHHHHHHhcCcEEEecCCc
Confidence 455544456688999999999999999998764
No 71
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=36.65 E-value=68 Score=26.54 Aligned_cols=71 Identities=18% Similarity=0.070 Sum_probs=39.9
Q ss_pred cccceeecccCCCCCCCCCCccccccCccCCCccEEecCCCCceeEeeCCCCCCCceEEccCCCCcEEEehhhhHHHHhC
Q 023505 163 PMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQVCREKFNQPRLWEDVPNIKGALIVNIGDMMERWTN 242 (281)
Q Consensus 163 ~~~~lr~~~Yp~~~~~~~~~~~~~~~H~D~~~lTll~~~~~~GLqv~~~~~~~~~~w~~v~~~~g~~ivn~Gd~l~~~T~ 242 (281)
....+|.+||+|..... +-...+..+ -..+.++..+-..+..-+. |.=+.||+.=|+.++|+||-==.+.+
T Consensus 88 t~G~~~~~H~Hp~ade~-E~y~vi~G~-----g~m~v~~~~G~~~v~~~~~---Gd~iyVPp~~gH~t~N~Gd~pLvf~~ 158 (209)
T COG2140 88 TPGAMRELHYHPNADEP-EIYYVLKGE-----GRMLVQKPEGEARVIAVRA---GDVIYVPPGYGHYTINTGDEPLVFLN 158 (209)
T ss_pred cCCcccccccCCCCCcc-cEEEEEecc-----EEEEEEcCCCcEEEEEecC---CcEEEeCCCcceEeecCCCCCEEEEE
Confidence 45578888998775431 222222222 1223333333344333322 33789999999999999985444444
No 72
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=33.92 E-value=1.1e+02 Score=25.45 Aligned_cols=41 Identities=20% Similarity=0.422 Sum_probs=30.7
Q ss_pred CcchHHHHHHHHHHHHhcceEEEEecC-CCHHHHHHHHHHHHH
Q 023505 14 SPDRLSTAKSIRQACIDYGFFYLVNHG-VEEELISQMFNESKK 55 (281)
Q Consensus 14 ~~~~~~~~~~l~~A~~~~Gff~l~nhg-i~~~~~~~~~~~~~~ 55 (281)
.....++.+.+.+||.+.|| +|.-.| |+.+-+..+++.+.+
T Consensus 159 Gl~~leE~~avA~aca~~g~-~lEPTGGIdl~Nf~~I~~i~ld 200 (236)
T TIGR03581 159 GLKHLEEYAAVAKACAKHGF-YLEPTGGIDLDNFEEIVQIALD 200 (236)
T ss_pred CcccHHHHHHHHHHHHHcCC-ccCCCCCccHHhHHHHHHHHHH
Confidence 45567778999999999997 566654 887777777766543
No 73
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=33.22 E-value=57 Score=25.54 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=25.3
Q ss_pred EEeCCCcchHHHHHHHHHHHHhcceEEEEecC
Q 023505 9 VIDLSSPDRLSTAKSIRQACIDYGFFYLVNHG 40 (281)
Q Consensus 9 vIDl~~~~~~~~~~~l~~A~~~~Gff~l~nhg 40 (281)
+|.|.....++....|.++|+.|||-.+.+..
T Consensus 54 t~~l~q~~~D~Fg~aL~~aLR~~GYaV~e~~~ 85 (151)
T PRK13883 54 RFELQQPTPDAFGQALVKALRDKGYALLEYNP 85 (151)
T ss_pred EEEEecCCCcHHHHHHHHHHHHcCeEEEecCC
Confidence 45665444568899999999999999998654
No 74
>PLN02452 phosphoserine transaminase
Probab=30.15 E-value=92 Score=28.18 Aligned_cols=50 Identities=12% Similarity=0.116 Sum_probs=37.5
Q ss_pred CcEEeCCCcchHHHHHHHHHHHHhcceEEEEecC------------CCHHHHHHHHHHHHHhh
Q 023505 7 LPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHG------------VEEELISQMFNESKKFF 57 (281)
Q Consensus 7 lPvIDl~~~~~~~~~~~l~~A~~~~Gff~l~nhg------------i~~~~~~~~~~~~~~fF 57 (281)
.++|.|.-.+. +.-+++.+.|++.|++.+.+|. ++.+.++++.+.+++|-
T Consensus 300 ~~~vsF~~~~~-~~~~~f~~~~~~~g~~~~~G~r~~gg~R~s~yna~~~~~v~~L~~~m~~f~ 361 (365)
T PLN02452 300 LMNVPFTLGGS-ELEAEFVKEAAKAGMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQ 361 (365)
T ss_pred CeEEEEEcCCc-hhHHHHHHHHHHCCCcccCCccccCceEEECcCCCCHHHHHHHHHHHHHHH
Confidence 34555653333 3688999999999999999885 45778888888888774
No 75
>PRK13835 conjugal transfer protein TrbH; Provisional
Probab=29.00 E-value=66 Score=24.94 Aligned_cols=29 Identities=14% Similarity=0.295 Sum_probs=22.8
Q ss_pred EEeCCCcchHHHHHHHHHHHHhcceEEEEe
Q 023505 9 VIDLSSPDRLSTAKSIRQACIDYGFFYLVN 38 (281)
Q Consensus 9 vIDl~~~~~~~~~~~l~~A~~~~Gff~l~n 38 (281)
+|.|.... .+....|..+|+.|||-.+.+
T Consensus 60 t~~l~q~~-d~Fg~aL~~aLr~~GYaVvtd 88 (145)
T PRK13835 60 TIKLKKDT-SPFGQALEAALKGWGYAVVTD 88 (145)
T ss_pred EEEEeecC-cHHHHHHHHHHHhcCeEEeec
Confidence 45564333 688999999999999999974
No 76
>TIGR00760 araD L-ribulose-5-phosphate 4-epimerase. The homolog to this family from Mycobacterium smegmatis is flanked by putative araB and araA genes, consistent with it also being araD.
Probab=28.72 E-value=88 Score=26.25 Aligned_cols=36 Identities=19% Similarity=0.159 Sum_probs=24.6
Q ss_pred CCcEEeCC------CcchHHHHHHHHHHHHhc-------ceEEEEecCC
Q 023505 6 QLPVIDLS------SPDRLSTAKSIRQACIDY-------GFFYLVNHGV 41 (281)
Q Consensus 6 ~lPvIDl~------~~~~~~~~~~l~~A~~~~-------Gff~l~nhgi 41 (281)
.||++++. .....+.++.+.+++.+. -.+.|.|||+
T Consensus 125 ~ip~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~avlL~nHGv 173 (231)
T TIGR00760 125 TIPCTRPMTDEEINGEYELETGKVIVETFEKRGIDPAQIPGVLVHSHGP 173 (231)
T ss_pred ceeeecCCCcccccccchHhHHHHHHHHHhhccCCcccCCEEEEcCCCc
Confidence 46776543 111235678888888876 5899999994
No 77
>PRK06208 hypothetical protein; Provisional
Probab=28.71 E-value=59 Score=28.17 Aligned_cols=36 Identities=22% Similarity=0.165 Sum_probs=26.9
Q ss_pred CCcEEeC-CC-cchHHHHHHHHHHHHhcceEEEEecCC
Q 023505 6 QLPVIDL-SS-PDRLSTAKSIRQACIDYGFFYLVNHGV 41 (281)
Q Consensus 6 ~lPvIDl-~~-~~~~~~~~~l~~A~~~~Gff~l~nhgi 41 (281)
.||++.. .. ....++++.+.+++++...+.|.|||+
T Consensus 163 ~ip~~~~~~g~~~s~ela~~va~~l~~~~avLL~NHGv 200 (274)
T PRK06208 163 DHALFDDFTGVVVDTSEGRRIAAALGTHKAVILQNHGL 200 (274)
T ss_pred CceeccCCCCccCchHHHHHHHHHhccCCEEEECCCCc
Confidence 3566533 21 125678999999999999999999994
No 78
>COG3695 Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]
Probab=26.79 E-value=25 Score=25.34 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=16.5
Q ss_pred ehhhhHHHHhCCcccccceeecCC
Q 023505 232 NIGDMMERWTNCLFRSTLHRVMSS 255 (281)
Q Consensus 232 n~Gd~l~~~T~G~~ks~~HRV~~~ 255 (281)
++|-.|..++.|..- ++|||++.
T Consensus 41 qVG~il~~l~~~s~l-PWhRVvns 63 (103)
T COG3695 41 QVGRILKHLPEGSDL-PWHRVVNS 63 (103)
T ss_pred HHHHHHhhCCCCCCC-ChhheecC
Confidence 467777777766543 69999983
No 79
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=25.94 E-value=1.7e+02 Score=24.39 Aligned_cols=41 Identities=27% Similarity=0.403 Sum_probs=27.1
Q ss_pred CcEEeCCCcchHHHHHHHHHHHHhcceEEEEecCCCHHHHHHHHHHHHH
Q 023505 7 LPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKK 55 (281)
Q Consensus 7 lPvIDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~ 55 (281)
-|+||++..+.+.+.+++.+..+..| ++...+.++++.+.+
T Consensus 118 ~p~i~~~~~g~~~~~~~l~~~~~~lg--------~~~~~~~~A~~~A~~ 158 (221)
T PF09989_consen 118 SPVIDFSNKGKESLAKALYELGKRLG--------ISRKEIRRAFEKALE 158 (221)
T ss_pred eeeeccCccchHHHHHHHHHHHHHcC--------CCHHHHHHHHHHHHH
Confidence 36777765445667778887666665 666776666665543
No 80
>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases. The Escherichia coli tauD gene is required for the utilization of taurine (2-aminoethanesulphonic acid) as a sulphur source and is expressed only under conditions of sulphate starvation. TauD is an alpha-ketoglutarate-dependent dioxygenase catalyzing the oxygenolytic release of sulphite from taurine []. The 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase from Burkholderia sp. (strain RASC) also belongs to this family []. TfdA from Ralstonia eutropha (Alcaligenes eutrophus) is a 2,4-D monooxygenase [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3SWT_B 3R1J_A 1GVG_A 1DRT_A 1DS1_A 1DS0_A 1DRY_A 3V15_A 3PVJ_D 3V17_A ....
Probab=25.38 E-value=1.2e+02 Score=25.17 Aligned_cols=30 Identities=23% Similarity=0.450 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhcceEEEEecCCCHHHHHH
Q 023505 19 STAKSIRQACIDYGFFYLVNHGVEEELISQ 48 (281)
Q Consensus 19 ~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~ 48 (281)
+..+++.+++.+.|++.|.+..+..+.+.+
T Consensus 24 ~~~~~~~~~l~~~G~vvlrg~~~~~~~~~~ 53 (258)
T PF02668_consen 24 EELEELREALAEYGFVVLRGFPLDPEQFEA 53 (258)
T ss_dssp CHHHHHHHHHHHHSEEEEESCTSSHHHHHH
T ss_pred HHHHHHHHHHhcccEEEEcCCCCCHHHHHH
Confidence 468899999999999999988875554433
No 81
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=25.18 E-value=2e+02 Score=24.79 Aligned_cols=44 Identities=18% Similarity=0.365 Sum_probs=32.6
Q ss_pred EEeCCCcchHHHHHHHHHHHHhcceEEEEec-CCCHHHHHHHHHHHHH
Q 023505 9 VIDLSSPDRLSTAKSIRQACIDYGFFYLVNH-GVEEELISQMFNESKK 55 (281)
Q Consensus 9 vIDl~~~~~~~~~~~l~~A~~~~Gff~l~nh-gi~~~~~~~~~~~~~~ 55 (281)
+|||+.+ +....+.+-|.+.|.-.|++. |++++.++.+.++++.
T Consensus 73 ~IDFT~P---~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~ 117 (266)
T COG0289 73 LIDFTTP---EATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAEK 117 (266)
T ss_pred EEECCCc---hhhHHHHHHHHHcCCCeEEECCCCCHHHHHHHHHHHhh
Confidence 5788764 335567788888888788774 7888888888877766
No 82
>PRK10628 LigB family dioxygenase; Provisional
Probab=24.49 E-value=97 Score=26.41 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=23.4
Q ss_pred CCCCCCCcEEeCCC---cchH--HHHHHHHHHHHhcceEEEEecC
Q 023505 1 MTEALQLPVIDLSS---PDRL--STAKSIRQACIDYGFFYLVNHG 40 (281)
Q Consensus 1 ~~~~~~lPvIDl~~---~~~~--~~~~~l~~A~~~~Gff~l~nhg 40 (281)
|-+.++||||-+|- .+.+ -..-+....|++.|.+.|- .|
T Consensus 105 m~P~adIPVvqlSl~~~~~~~~h~~lG~aL~~LR~~gvLIig-SG 148 (246)
T PRK10628 105 MYPDADIPMVQLSIDSTKPAAWHFEMGRKLAALRDEGIMLVA-SG 148 (246)
T ss_pred hCCCCCCCeEEeecCCCCCHHHHHHHHHHHHhhccCCEEEEe-cC
Confidence 55789999999882 2221 1233344556777887554 44
No 83
>KOG2631 consensus Class II aldolase/adducin N-terminal domain protein [Carbohydrate transport and metabolism]
Probab=24.21 E-value=1.9e+02 Score=24.05 Aligned_cols=62 Identities=23% Similarity=0.248 Sum_probs=39.1
Q ss_pred CCCCcEEeCCCcchHHHHHHHHHHHH---hcceEEEEecCCC-----HHHHHHHHHHHHHhhcCCHHHHhh
Q 023505 4 ALQLPVIDLSSPDRLSTAKSIRQACI---DYGFFYLVNHGVE-----EELISQMFNESKKFFSLQLEDKMK 66 (281)
Q Consensus 4 ~~~lPvIDl~~~~~~~~~~~l~~A~~---~~Gff~l~nhgi~-----~~~~~~~~~~~~~fF~lp~e~K~~ 66 (281)
...||+|+=.. ...++.+.|..|+. +.=.+.|++|||- =+....+.++.+-+|++..+-|+.
T Consensus 154 ~L~vPIIeNt~-~E~~L~D~l~~aie~YP~tcAVLVR~HGvyvWG~TWekaKt~~EcydYLfelaikm~kl 223 (238)
T KOG2631|consen 154 TLVVPIIENTP-SESDLKDSLKKAIELYPDTCAVLVRRHGVYVWGPTWEKAKTMTECYDYLFELAIKMKKL 223 (238)
T ss_pred eEEEeeecCCc-hHHHHHHHHHHHHHhCCcceEEEEecCcEEEecCcHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45688888643 23455677777776 4568889999962 133444555666677765554443
No 84
>COG3615 TehB Uncharacterized protein/domain, possibly involved in tellurite resistance [Inorganic ion transport and metabolism]
Probab=22.76 E-value=88 Score=22.39 Aligned_cols=23 Identities=13% Similarity=0.313 Sum_probs=18.6
Q ss_pred ccceeecC-CCCCeEEEEeeecCC
Q 023505 247 STLHRVMS-SGQERYSVIICFLSH 269 (281)
Q Consensus 247 s~~HRV~~-~~~~R~S~~~f~~p~ 269 (281)
-.+|||-. +...++-|-|||.|.
T Consensus 76 Q~WHrVea~tDD~e~~l~Fyc~~e 99 (99)
T COG3615 76 QAWHRVEAMTDDAEFNLSFYCAPE 99 (99)
T ss_pred hHeeeeeecccccEEEEEEEEcCC
Confidence 35899986 677899999999874
No 85
>PF08823 PG_binding_2: Putative peptidoglycan binding domain; InterPro: IPR014927 This entry may be a peptidoglycan binding domain.
Probab=22.73 E-value=1.3e+02 Score=20.31 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHhcceEEEEecCCCHHHHHHHHH
Q 023505 17 RLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFN 51 (281)
Q Consensus 17 ~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~ 51 (281)
..++++.|.++++..||..=..+|.-.+...+++.
T Consensus 14 ~~~~~~evq~~L~~lGyy~g~~~g~~d~a~~~Al~ 48 (74)
T PF08823_consen 14 DGDVAREVQEALKRLGYYKGEADGVWDEATEDALR 48 (74)
T ss_pred cHHHHHHHHHHHHHcCCccCCCCCcccHHHHHHHH
Confidence 45678999999999999777777765554444444
No 86
>PRK08324 short chain dehydrogenase; Validated
Probab=21.84 E-value=1.2e+02 Score=29.88 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=27.3
Q ss_pred CCcEEeCCCcchHHHHHHHHHHHHhcc---eEEEEecCC
Q 023505 6 QLPVIDLSSPDRLSTAKSIRQACIDYG---FFYLVNHGV 41 (281)
Q Consensus 6 ~lPvIDl~~~~~~~~~~~l~~A~~~~G---ff~l~nhgi 41 (281)
.||+++|..+. .++++.+.++++..+ .+.|.|||+
T Consensus 155 ~v~~~py~~pg-~~l~~~~~~~~~~~~~~~~~lL~nHG~ 192 (681)
T PRK08324 155 RVGWVPYVRPG-FDLALAIAEAVRANPGAEGVVLGKHGL 192 (681)
T ss_pred ceEEcCccCCC-hHHHHHHHHHHHhCCCCcEEEECCCCC
Confidence 57888888665 456677888887665 899999995
No 87
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=21.52 E-value=76 Score=22.19 Aligned_cols=56 Identities=20% Similarity=0.281 Sum_probs=35.6
Q ss_pred CCcEEeCC--CcchHHHHHHHHHHHHhcceEEEEecCCCHHHHHHHHHHHHHhhcCCH
Q 023505 6 QLPVIDLS--SPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQL 61 (281)
Q Consensus 6 ~lPvIDl~--~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~ 61 (281)
++=+||+. ..+..+++++|++......++.+.++.-.....+.+...+..|...|.
T Consensus 45 d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~ 102 (112)
T PF00072_consen 45 DLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDEDDSDEVQEALRAGADDYLSKPF 102 (112)
T ss_dssp SEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHHTTESEEEESSS
T ss_pred eEEEEEeeeccccccccccccccccccccEEEecCCCCHHHHHHHHHCCCCEEEECCC
Confidence 45578876 334567889998888788888888776444333333334445555553
No 88
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=20.85 E-value=1.5e+02 Score=18.57 Aligned_cols=26 Identities=4% Similarity=0.092 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhhhc
Q 023505 130 QKVLSAGRRLIHLIALALNLNEDFFE 155 (281)
Q Consensus 130 ~~~~~~~~~ll~~l~~~lgl~~~~~~ 155 (281)
+.-.+++..|.+++.+.+|.+++...
T Consensus 14 e~K~~l~~~it~~~~~~lg~~~~~i~ 39 (60)
T PF01361_consen 14 EQKRELAEAITDAVVEVLGIPPERIS 39 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-GGGEE
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCeEE
Confidence 35678888899999999999887654
Done!