BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023507
(281 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 185 bits (469), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 116/314 (36%), Positives = 160/314 (50%), Gaps = 80/314 (25%)
Query: 38 THEQSVVEIHEKWMAQHGRSYKDELEKEMRLKIFKENLEYIEKANKEGNRTYKLGTNQFS 97
T + ++++ E WM +H + YK+ EK R +IFK+NL+YI++ NK+ N +Y LG N F+
Sbjct: 57 TSTERLIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKK-NNSYWLGLNVFA 115
Query: 98 DLTNDEFRALYTGYKMPSPSHRXXXXXXFKYQNLSMTDVPTSLDWRDKGAVTPIKNQKEC 157
D++NDEF+ YTG + ++ + N ++P +DWR KGAVTP+KNQ C
Sbjct: 116 DMSNDEFKEKYTG--SIAGNYTTTELSYEEVLNDGDVNIPEYVDWRQKGAVTPVKNQGSC 173
Query: 158 GCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNGNNGCLGG--------------- 202
G WAF+AV+ +E I KIR+GNL + SEQ+LLDC + GC GG
Sbjct: 174 GSAWAFSAVSTIESIIKIRTGNLNEYSEQELLDCDRR-SYGCNGGYPWSALQLVAQYGIH 232
Query: 203 ---------------SREK-------------------AFAYIIQNQ------------- 215
SREK A Y I NQ
Sbjct: 233 YRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDF 292
Query: 216 -----GIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVR----D 266
GIF G CG ++DHAV VG+ G NY LI+NSWG WG+ GY++I R
Sbjct: 293 QLYRGGIFVGPCGNKVDHAVAAVGY-----GPNYILIRNSWGTGWGENGYIRIKRGTGNS 347
Query: 267 EGLCGIGTRSSYPL 280
G+CG+ T S YP+
Sbjct: 348 YGVCGLYTSSFYPV 361
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 154 bits (390), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 115/177 (64%), Gaps = 5/177 (2%)
Query: 38 THEQSVVEIHEKWMAQHGRSYKDELEKEMRLKIFKENLEYIEKANKEGNRTYKLGTNQFS 97
T + ++++ WM H + Y++ EK R +IFK+NL YI++ NK+ N +Y LG N+F+
Sbjct: 13 TSTERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKK-NNSYWLGLNEFA 71
Query: 98 DLTNDEFRALYTGYKMPSPSHRXXXXXXFKYQNLSMTDVPTSLDWRDKGAVTPIKNQKEC 157
DL+NDEF Y G + + + ++ N + ++P ++DWR KGAVTP+++Q C
Sbjct: 72 DLSNDEFNEKYVGSLIDATIEQSYDE---EFINEDIVNLPENVDWRKKGAVTPVRHQGSC 128
Query: 158 GCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNGNNGCLGGSREKAFAYIIQN 214
G CWAF+AVA VEGI KIR+G L++LSEQ+L+DC ++GC GG A Y+ +N
Sbjct: 129 GSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERR-SHGCKGGYPPYALEYVAKN 184
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 45/78 (57%), Gaps = 5/78 (6%)
Query: 206 KAFAYIIQNQGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVR 265
K + + GIF G CGT++D AVT VG+G + LIKNSWG WG+ GY++I R
Sbjct: 243 KGRPFQLYKGGIFEGPCGTKVDGAVTAVGYGKSGGKGYI-LIKNSWGTAWGEKGYIRIKR 301
Query: 266 ----DEGLCGIGTRSSYP 279
G+CG+ S YP
Sbjct: 302 APGNSPGVCGLYKSSYYP 319
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 103/216 (47%), Gaps = 77/216 (35%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNG 195
+P +DWR KGAVTP+KNQ CG CWAF+AV +EGI KIR+GNL Q SEQ+LLDC
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR- 59
Query: 196 NNGCLGG------------------------------SREK------------------- 206
+ GC GG SREK
Sbjct: 60 SYGCNGGYPWSALQLVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQG 119
Query: 207 AFAYIIQNQ------------------GIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIK 248
A Y I NQ GIF G CG ++DHAV VG+ G NY LIK
Sbjct: 120 ALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY-----GPNYILIK 174
Query: 249 NSWGNTWGDAGYMKIVR----DEGLCGIGTRSSYPL 280
NSWG WG+ GY++I R G+CG+ T S YP+
Sbjct: 175 NSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 102/215 (47%), Gaps = 77/215 (35%)
Query: 137 PTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNGN 196
P +DWR KGAVTP+KNQ CG CWAF+AV +EGI KIR+GNL Q SEQ+LLDC +
Sbjct: 2 PEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR-S 60
Query: 197 NGCLGG------------------------------SREK-------------------A 207
GC GG SREK A
Sbjct: 61 YGCNGGYPWSALQLVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQGA 120
Query: 208 FAYIIQNQ------------------GIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKN 249
Y I NQ GIF G CG ++DHAV VG+ G NY LIKN
Sbjct: 121 LLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY-----GPNYILIKN 175
Query: 250 SWGNTWGDAGYMKIVR----DEGLCGIGTRSSYPL 280
SWG WG+ GY++I R G+CG+ T S YP+
Sbjct: 176 SWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 85/216 (39%), Positives = 103/216 (47%), Gaps = 77/216 (35%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNG 195
+P +DWR KGAVTP+KNQ CG CWAF+AV +EGI KIR+GNL + SEQ+LLDC
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRR- 59
Query: 196 NNGCLGG------------------------------SREK------------------- 206
+ GC GG SREK
Sbjct: 60 SYGCNGGYPWSALQLVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEG 119
Query: 207 AFAYIIQNQ------------------GIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIK 248
A Y I NQ GIF G CG ++DHAV VG+ G NY LIK
Sbjct: 120 ALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY-----GPNYILIK 174
Query: 249 NSWGNTWGDAGYMKIVR----DEGLCGIGTRSSYPL 280
NSWG WG+ GY++I R G+CG+ T S YP+
Sbjct: 175 NSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 108/185 (58%), Gaps = 11/185 (5%)
Query: 39 HEQSVVEIH-EKWMAQHGRSYKDELEKEMRLKIFKENLEYIEKANKE---GNRTYKLGTN 94
H+ ++ H W +G+ YK++ E+ +R I+++NL+++ N E G +Y LG N
Sbjct: 3 HKDPTLDHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMN 62
Query: 95 QFSDLTNDEFRALYTGYKMPSPSHRXXXXXXFKYQNLSMTDVPTSLDWRDKGAVTPIKNQ 154
D+T++E +L + ++PS R Y++ +P S+DWR+KG VT +K Q
Sbjct: 63 HLGDMTSEEVMSLMSSLRVPSQWQRN-----ITYKSNPNRILPDSVDWREKGCVTEVKYQ 117
Query: 155 KECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTN--GNNGCLGGSREKAFAYII 212
CG WAF+AV A+E K+++G L+ LS Q L+DCST GN GC GG AF YII
Sbjct: 118 GSCGAAWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYII 177
Query: 213 QNQGI 217
N+GI
Sbjct: 178 DNKGI 182
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 203 SREKAFAYIIQNQGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMK 262
+R +F ++ ++ + C ++H V +VG+G +G YWL+KNSWG+ +G+ GY++
Sbjct: 238 ARHPSF-FLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEYWLVKNSWGHNFGEEGYIR 295
Query: 263 IVRDEG-LCGIGTRSSYP 279
+ R++G CGI + SYP
Sbjct: 296 MARNKGNHCGIASFPSYP 313
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/216 (39%), Positives = 102/216 (47%), Gaps = 77/216 (35%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNG 195
+P +DWR KGAVTP+KNQ CG WAF+AV +EGI KIR+GNL Q SEQ+LLDC
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR- 59
Query: 196 NNGCLGG------------------------------SREK------------------- 206
+ GC GG SREK
Sbjct: 60 SYGCNGGYPWSALQLVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEG 119
Query: 207 AFAYIIQNQ------------------GIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIK 248
A Y I NQ GIF G CG ++DHAV VG+ G NY LIK
Sbjct: 120 ALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY-----GPNYILIK 174
Query: 249 NSWGNTWGDAGYMKIVR----DEGLCGIGTRSSYPL 280
NSWG WG+ GY++I R G+CG+ T S YP+
Sbjct: 175 NSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/216 (39%), Positives = 102/216 (47%), Gaps = 77/216 (35%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNG 195
+P +DWR KGAVTP+KNQ CG WAF+AV +EGI KIR+GNL Q SEQ+LLDC
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR- 59
Query: 196 NNGCLGG------------------------------SREK------------------- 206
+ GC GG SREK
Sbjct: 60 SYGCNGGYPWSALQLVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQG 119
Query: 207 AFAYIIQNQ------------------GIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIK 248
A Y I NQ GIF G CG ++DHAV VG+ G NY LIK
Sbjct: 120 ALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY-----GPNYILIK 174
Query: 249 NSWGNTWGDAGYMKIVR----DEGLCGIGTRSSYPL 280
NSWG WG+ GY++I R G+CG+ T S YP+
Sbjct: 175 NSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 101/213 (47%), Gaps = 70/213 (32%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNG 195
+P+ +DWR KGAV IKNQK+CG CWAF+AVAAVE I KIR+G LI LSEQ+L+DC T
Sbjct: 1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDT-A 59
Query: 196 NNGCLGGSREKAFAYIIQNQGI----------FNGVCGTQLDHAVTIVGF---------- 235
++GC GG AF YII N GI G C V+I GF
Sbjct: 60 SHGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQGSCKPYRLRVVSINGFQRVTRNNESA 119
Query: 236 ---------------------------------GTTED------------GANYWLIKNS 250
GT ++ G NYW+++NS
Sbjct: 120 LQSAVASQPVSVTVEAAGAPFQHYSSGIFTGPCGTAQNHGVVIVGYGTQSGKNYWIVRNS 179
Query: 251 WGNTWGDAGYMKIVRD----EGLCGIGTRSSYP 279
WG WG+ GY+ + R+ GLCGI SYP
Sbjct: 180 WGQNWGNQGYIWMERNVASSAGLCGIAQLPSYP 212
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 127 bits (320), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 102/216 (47%), Gaps = 77/216 (35%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNG 195
+P +DWR KGAVTP+KNQ CG WAF+AV +EGI KIR+GNL + SEQ+LLDC
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRR- 59
Query: 196 NNGCLGG------------------------------SREK------------------- 206
+ GC GG SREK
Sbjct: 60 SYGCNGGYPWSALQLVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEG 119
Query: 207 AFAYIIQNQ------------------GIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIK 248
A Y I NQ GIF G CG ++DHAV VG+ G NY LIK
Sbjct: 120 ALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY-----GPNYILIK 174
Query: 249 NSWGNTWGDAGYMKIVR----DEGLCGIGTRSSYPL 280
NSWG WG+ GY++I R G+CG+ T S YP+
Sbjct: 175 NSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 126 bits (316), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 103/184 (55%), Gaps = 11/184 (5%)
Query: 38 THEQSVVEIHEKWMAQHGRSYKDELEKEMRLKIFKENLEYIEKAN---KEGNRTYKLGTN 94
T + S+ KW A H R Y E+ R ++++N++ IE N +EG ++ + N
Sbjct: 3 TFDHSLEAQWTKWKAMHNRLYGMN-EEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMN 61
Query: 95 QFSDLTNDEFRALYTGYKMPSPSHRXXXXXXFKYQNLSMTDVPTSLDWRDKGAVTPIKNQ 154
F D+T++EFR + G++ P +Q + P S+DWR+KG VTP+KNQ
Sbjct: 62 AFGDMTSEEFRQVMNGFQNRKPRKGKV------FQEPLFYEAPRSVDWREKGYVTPVKNQ 115
Query: 155 KECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCS-TNGNNGCLGGSREKAFAYIIQ 213
+CG WAF+A A+EG ++G LI LSEQ L+DCS GN GC GG + AF Y+
Sbjct: 116 GQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQD 175
Query: 214 NQGI 217
N G+
Sbjct: 176 NGGL 179
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 6/77 (7%)
Query: 209 AYIIQNQGI-FNGVCGTQ-LDHAVTIVGFG---TTEDGANYWLIKNSWGNTWGDAGYMKI 263
+++ +GI F C ++ +DH V +VG+G T D YWL+KNSWG WG GY+K+
Sbjct: 238 SFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKM 297
Query: 264 VRD-EGLCGIGTRSSYP 279
+D CGI + +SYP
Sbjct: 298 AKDRRNHCGIASAASYP 314
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 124 bits (311), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 98/173 (56%), Gaps = 11/173 (6%)
Query: 49 KWMAQHGRSYKDELEKEMRLKIFKENLEYIEKAN---KEGNRTYKLGTNQFSDLTNDEFR 105
KW A H R Y E+ R ++++N++ IE N +EG ++ + N F D+T++EFR
Sbjct: 10 KWKAMHNRLYGMN-EEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFR 68
Query: 106 ALYTGYKMPSPSHRXXXXXXFKYQNLSMTDVPTSLDWRDKGAVTPIKNQKECGCCWAFAA 165
+ G + P +Q + P S+DWR+KG VTP+KNQ +CG WAF+A
Sbjct: 69 QVMNGLQNRKPRKGKV------FQEPLFYEAPRSVDWREKGYVTPVKNQGQCGSSWAFSA 122
Query: 166 VAAVEGITKIRSGNLIQLSEQQLLDCS-TNGNNGCLGGSREKAFAYIIQNQGI 217
A+EG ++G LI LSEQ L+DCS GN GC GG + AF Y+ N G+
Sbjct: 123 TGALEGQMFRKTGRLISLSEQNLVDCSGPEGNEGCNGGLMDYAFQYVQDNGGL 175
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 6/77 (7%)
Query: 209 AYIIQNQGI-FNGVCGTQ-LDHAVTIVGFG---TTEDGANYWLIKNSWGNTWGDAGYMKI 263
+++ +GI F C ++ +DH V +VG+G T DG YWL+KNSWG WG GY+K+
Sbjct: 234 SFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDGNKYWLVKNSWGEEWGMGGYVKM 293
Query: 264 VRD-EGLCGIGTRSSYP 279
+D CGI + +SYP
Sbjct: 294 AKDRRNHCGIASAASYP 310
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 105/183 (57%), Gaps = 8/183 (4%)
Query: 39 HEQSVVEIH-EKWMAQHGRSYKDELEKEMRLKIFKENLEYIEKANKE---GNRTYKLGTN 94
+ + +++ H E W H + Y +++++ R I+++NL+YI N E G TY+L N
Sbjct: 2 YPEEILDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMN 61
Query: 95 QFSDLTNDEFRALYTGYKMPSPSHRXXXXXXFKYQNLSMTDVPTSLDWRDKGAVTPIKNQ 154
D+T++E TG K+P R Y P S+D+R KG VTP+KNQ
Sbjct: 62 HLGDMTSEEVVQKMTGLKVPLSHSRSNDTL---YIPEWEGRAPDSVDYRKKGYVTPVKNQ 118
Query: 155 KECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNGNNGCLGGSREKAFAYIIQN 214
+CG CWAF++V A+EG K ++G L+ LS Q L+DC + N+GC GG AF Y+ +N
Sbjct: 119 GQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE-NDGCGGGYMTNAFQYVQKN 177
Query: 215 QGI 217
+GI
Sbjct: 178 RGI 180
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 226 LDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRDE-GLCGIGTRSSYP 279
L+HAV VG+G + G +W+IKNSWG WG+ GY+ + R++ CGI +S+P
Sbjct: 259 LNHAVLAVGYGI-QKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFP 312
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 120 bits (301), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 101/183 (55%), Gaps = 10/183 (5%)
Query: 43 VVEIHEKWMAQHGRSYKDELEKEMRLKIFKENLEYIEKAN---KEGNRTYKLGTNQFSDL 99
V E E + + RSY + E+ R +IF++ LE E+ N ++G +Y LG N F+D+
Sbjct: 18 VAEKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTLGVNLFTDM 77
Query: 100 TNDEFRALYTGYKMPSPSHRXXXXXXFKYQNLSM---TDVPTSLDWRDKGAVTPIKNQKE 156
T +E +A G MP+ H+ + ++L + P S DWRD+G V+P+KNQ
Sbjct: 78 TPEEMKAYTHGLIMPADLHKNGIPIKTR-EDLGLNASVRYPASFDWRDQGMVSPVKNQGS 136
Query: 157 CGCCWAFAAVAAVEGITKIRSGNLIQ--LSEQQLLDCSTNGNNGCLGGSREKAFAYIIQN 214
CG WAF++ A+E KI +G +SEQQL+DC N GC GG AF Y+ QN
Sbjct: 137 CGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDCVPNA-LGCSGGWMNDAFTYVAQN 195
Query: 215 QGI 217
GI
Sbjct: 196 GGI 198
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 218 FNGVCGT-QLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRD-EGLCGIGTR 275
+N C T + HAV IVG+G E+G +YWL+KNSWG+ WG GY KI R+ CGI
Sbjct: 267 YNPTCETNKFTHAVLIVGYGN-ENGQDYWLVKNSWGDGWGLDGYFKIARNANNHCGIAGV 325
Query: 276 SSYP 279
+S P
Sbjct: 326 ASVP 329
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 111 bits (277), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 75/125 (60%), Gaps = 7/125 (5%)
Query: 94 NQFSDLTNDEFRALYTGYKMPSPSHRXXXXXXFKYQNLSMTDVPTSLDWRDKGAVTPIKN 153
N F D+T++EFR + G++ P +Q + P S+DWR+KG VTP+KN
Sbjct: 3 NAFGDMTSEEFRQVMNGFQNRKPRKGKV------FQEPLFYEAPRSVDWREKGYVTPVKN 56
Query: 154 QKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCS-TNGNNGCLGGSREKAFAYII 212
Q +CG CWAF+A A+EG ++G LI LSEQ L+DCS GN GC GG + AF Y+
Sbjct: 57 QGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQ 116
Query: 213 QNQGI 217
N G+
Sbjct: 117 DNGGL 121
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 6/77 (7%)
Query: 209 AYIIQNQGI-FNGVCGTQ-LDHAVTIVGFG---TTEDGANYWLIKNSWGNTWGDAGYMKI 263
+++ +GI F C ++ +DH V +VG+G T D YWL+KNSWG WG GY+K+
Sbjct: 180 SFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKM 239
Query: 264 VRD-EGLCGIGTRSSYP 279
+D CGI + +SYP
Sbjct: 240 AKDRRNHCGIASAASYP 256
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 47/86 (54%), Positives = 64/86 (74%)
Query: 133 MTDVPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCS 192
++D+P S+DWR KGAVT +K+Q +CG CWAF+ V +VEGI IR+G+L+ LSEQ+L+DC
Sbjct: 1 VSDLPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCD 60
Query: 193 TNGNNGCLGGSREKAFAYIIQNQGIF 218
T N+GC GG + AF YI N G+
Sbjct: 61 TADNDGCQGGLMDNAFEYIKNNGGLI 86
Score = 94.4 bits (233), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 209 AYIIQNQGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRDE- 267
A++ ++G+F G CGT+LDH V +VG+G EDG YW +KNSWG +WG+ GY+++ +D
Sbjct: 148 AFMFYSEGVFTGECGTELDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEKDSG 207
Query: 268 ---GLCGIGTRSSYPL 280
GLCGI +SYP+
Sbjct: 208 ASGGLCGIAMEASYPV 223
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/83 (60%), Positives = 63/83 (75%), Gaps = 1/83 (1%)
Query: 135 DVPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTN 194
D+P S+DWR+ GAV P+KNQ CG CWAF+ VAAVEGI +I +G+LI LSEQQL+DC+T
Sbjct: 2 DLPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTT- 60
Query: 195 GNNGCLGGSREKAFAYIIQNQGI 217
N+GC GG AF +I+ N GI
Sbjct: 61 ANHGCRGGWMNPAFQFIVNNGGI 83
Score = 70.5 bits (171), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 47/69 (68%), Gaps = 5/69 (7%)
Query: 216 GIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRD----EGLCG 271
GIF G C +HA+T+VG+GT D ++W++KNSWG WG++GY++ R+ +G CG
Sbjct: 149 GIFTGSCNISANHALTVVGYGTEND-KDFWIVKNSWGKNWGESGYIRAERNIENPDGKCG 207
Query: 272 IGTRSSYPL 280
I +SYP+
Sbjct: 208 ITRFASYPV 216
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 49/82 (59%), Positives = 62/82 (75%), Gaps = 1/82 (1%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNG 195
+P +DWR KGAVTP+KNQ +CG CWAF+ V+ VE I +IR+GNLI LSEQQL+DC+
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGKCGSCWAFSTVSTVESINQIRTGNLISLSEQQLVDCNKK- 59
Query: 196 NNGCLGGSREKAFAYIIQNQGI 217
N+GC GG+ A+ YII N GI
Sbjct: 60 NHGCKGGAFVYAYQYIIDNGGI 81
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 42/66 (63%), Gaps = 7/66 (10%)
Query: 216 GIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGY--MKIVRDEGLCGIG 273
GIF+G CGT+L+H V IVG+ +YW+++NSWG WG+ GY MK V GLCGI
Sbjct: 145 GIFSGPCGTKLNHGVVIVGYWK-----DYWIVRNSWGRYWGEQGYIRMKRVGGCGLCGIA 199
Query: 274 TRSSYP 279
YP
Sbjct: 200 RLPYYP 205
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 49/82 (59%), Positives = 61/82 (74%), Gaps = 1/82 (1%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNG 195
+P +DWR KGAVTP+KNQ CG CWAF+ V+ VE I +IR+GNLI LSEQ+L+DC
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKK- 59
Query: 196 NNGCLGGSREKAFAYIIQNQGI 217
N+GCLGG+ A+ YII N GI
Sbjct: 60 NHGCLGGAFVFAYQYIINNGGI 81
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 46/66 (69%), Gaps = 7/66 (10%)
Query: 216 GIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVR--DEGLCGIG 273
GIF+G CGT+L+H VTIVG+ ANYW+++NSWG WG+ GY++++R GLCGI
Sbjct: 145 GIFSGPCGTKLNHGVTIVGYQ-----ANYWIVRNSWGRYWGEKGYIRMLRVGGCGLCGIA 199
Query: 274 TRSSYP 279
YP
Sbjct: 200 RLPYYP 205
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 91/168 (54%), Gaps = 20/168 (11%)
Query: 54 HGRSYKDELEKEMRLKIFKENLEYIEKAN---KEGNRTYKLGTNQFSDLTNDEFRALYTG 110
H +SY +E+ R IFK+N+ I + N ++G TY NQF D++ +EF A
Sbjct: 34 HKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAMNQFGDMSKEEFLAYVNR 93
Query: 111 YKMPSPSHRXXXXXXFKYQNLSMTDVPT------SLDWRDKGAVTPIKNQKECGCCWAFA 164
K P H +NL M V + S+DWR AV+ +K+Q +CG W+F+
Sbjct: 94 GKAQKPKHP---------ENLRMPYVSSKKPLAASVDWRSN-AVSEVKDQGQCGSSWSFS 143
Query: 165 AVAAVEGITKIRSGNLIQLSEQQLLDCSTN-GNNGCLGGSREKAFAYI 211
AVEG ++ G L LSEQ L+DCS++ GN GC GG + AF+YI
Sbjct: 144 TTGAVEGQLALQRGRLTSLSEQNLIDCSSSYGNAGCDGGWMDSAFSYI 191
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 44/57 (77%), Gaps = 2/57 (3%)
Query: 224 TQLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRDEG-LCGIGTRSSYP 279
+ L+H V +VG+G+ ++G +YW++KNSWG+ WG++GY + VR+ G CGI T +SYP
Sbjct: 272 SDLNHGVLVVGYGS-DNGQDYWILKNSWGSGWGESGYWRQVRNYGNNCGIATAASYP 327
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 104 bits (260), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 49/82 (59%), Positives = 61/82 (74%), Gaps = 1/82 (1%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNG 195
+P +DWR KGAV P+KNQ +CG CWAF+ V VE I +IR+GNLI LSEQQL+DCS
Sbjct: 1 LPEHVDWRAKGAVIPLKNQGKCGSCWAFSTVTTVESINQIRTGNLISLSEQQLVDCSKK- 59
Query: 196 NNGCLGGSREKAFAYIIQNQGI 217
N+GC GG ++A+ YII N GI
Sbjct: 60 NHGCKGGYFDRAYQYIIANGGI 81
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 42/66 (63%), Gaps = 7/66 (10%)
Query: 216 GIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGY--MKIVRDEGLCGIG 273
GIF G CGT+L+H V IVG+G +YW+++NSWG WG+ GY MK V GLCGI
Sbjct: 145 GIFTGPCGTKLNHGVVIVGYGK-----DYWIVRNSWGRHWGEQGYTRMKRVGGCGLCGIA 199
Query: 274 TRSSYP 279
YP
Sbjct: 200 RLPFYP 205
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 68/107 (63%), Gaps = 10/107 (9%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNG 195
VP S+DWR KGAVT +K+Q +CG CWAF+ + AVEGI +I++ L+ LSEQ+L+DC T+
Sbjct: 2 VPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQ 61
Query: 196 NNGCLGGSREKAFAYIIQNQGI----------FNGVCGTQLDHAVTI 232
N GC GG + AF +I Q GI ++G C ++A +
Sbjct: 62 NQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGTCDVSKENAPAV 108
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 51/71 (71%), Gaps = 4/71 (5%)
Query: 214 NQGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVR----DEGL 269
++G+F G CGT+LDH V IVG+GTT DG YW +KNSWG WG+ GY+++ R EGL
Sbjct: 148 SEGVFTGSCGTELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGL 207
Query: 270 CGIGTRSSYPL 280
CGI +SYP+
Sbjct: 208 CGIAMEASYPI 218
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 101 bits (251), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 94/173 (54%), Gaps = 9/173 (5%)
Query: 45 EIHEKWMAQHGRSYKDELEKEMRLKIFKENLEYIEKANKE---GNRTYKLGTNQFSDLTN 101
++ +W + + Y + + + R I+++N+++I++ N G TY LG NQF+D+T
Sbjct: 3 DLWHQWKRMYNKEY-NGADDQHRRNIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTF 61
Query: 102 DEFRALYTGYKMPSPSHRXXXXXXFKYQNLSMTDVPTSLDWRDKGAVTPIKNQKECGCCW 161
+EF+A Y +M S ++ N + VP +DWR+ G VT +K+Q CG W
Sbjct: 62 EEFKAKYLT-EMSRASDILSHGVPYEANNRA---VPDKIDWRESGYVTEVKDQGNCGSGW 117
Query: 162 AFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTN-GNNGCLGGSREKAFAYIIQ 213
AF+ +EG I SEQQL+DCS GNNGC GG E A+ Y+ Q
Sbjct: 118 AFSTTGTMEGQYMKNERTSISFSEQQLVDCSRPWGNNGCGGGLMENAYQYLKQ 170
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 165 AVAAVEGITKIRSGNLIQLSEQQLLDCSTNGNNGCLGGSREKAFAYIIQNQGIFNG-VCG 223
VA V G + SG+ ++L + L+ G G + + +++ GI+ C
Sbjct: 195 GVAKVTGFYTVHSGSEVEL--KNLV-----GAEGPAAVAVDVESDFMMYRSGIYQSQTCS 247
Query: 224 T-QLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRDEG-LCGIGTRSSYPL 280
+++HAV VG+GT + G +YW++KNSWG +WG+ GY+++VR+ G +CGI + +S P+
Sbjct: 248 PLRVNHAVLAVGYGT-QGGTDYWIVKNSWGLSWGERGYIRMVRNRGNMCGIASLASLPM 305
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCS-TN 194
+P S+DWR KG VTP+KNQK+CG CWAF+A A+EG ++G L+ LSEQ L+DCS
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 195 GNNGCLGGSREKAFAYIIQNQGI 217
GN GC GG +AF Y+ +N G+
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGL 83
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 38/58 (65%), Gaps = 4/58 (6%)
Query: 226 LDHAVTIVGFG---TTEDGANYWLIKNSWGNTWGDAGYMKIVRDE-GLCGIGTRSSYP 279
LDH V +VG+G D + YWL+KNSWG WG GY+KI +D+ CGI T +SYP
Sbjct: 162 LDHGVLVVGYGFEGANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYP 219
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/78 (56%), Positives = 57/78 (73%), Gaps = 1/78 (1%)
Query: 137 PTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNGN 196
P S+DWR+KGAVTP+KNQ CG CWAF+ VA +EGI KI +G LI LSEQ+LLDC +
Sbjct: 2 PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERR-S 60
Query: 197 NGCLGGSREKAFAYIIQN 214
+GC GG + + Y++ N
Sbjct: 61 HGCDGGYQTTSLQYVVDN 78
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 57/106 (53%), Gaps = 19/106 (17%)
Query: 179 NLIQLSEQQLLDCSTNGNNGCLGGSREKAFAYIIQNQGIFNGVCGTQLDHAVTIVGFGTT 238
+LIQ Q + T+ SR + F + GI+ G CGT DHAVT VG+G T
Sbjct: 120 SLIQAIANQPVSVVTD--------SRGRGFQFY--KGGIYEGPCGTNTDHAVTAVGYGKT 169
Query: 239 EDGANYWLIKNSWGNTWGDAGYMKIV----RDEGLCGIGTRSSYPL 280
Y L+KNSWG WG+ GY++I R +G CG+ T S +P+
Sbjct: 170 -----YLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGVYTSSFFPI 210
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 59/79 (74%), Gaps = 1/79 (1%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNG 195
+P ++DWR KGAVTP+++Q CG CWAF+AVA VEGI KIR+G L++LSEQ+L+DC
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERR- 59
Query: 196 NNGCLGGSREKAFAYIIQN 214
++GC GG A Y+ +N
Sbjct: 60 SHGCKGGYPPYALEYVAKN 78
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Query: 206 KAFAYIIQNQGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVR 265
K + + GIF G CGT+++HAVT VG+G + LIKNSWG WG+ GY++I R
Sbjct: 137 KGRPFQLYKGGIFEGPCGTKVEHAVTAVGYGKSGGKGYI-LIKNSWGTAWGEKGYIRIKR 195
Query: 266 ----DEGLCGIGTRSSYP 279
G+CG+ S YP
Sbjct: 196 APGNSPGVCGLYKSSYYP 213
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 59/79 (74%), Gaps = 1/79 (1%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNG 195
+P ++DWR KGAVTP+++Q CG CWAF+AVA VEGI KIR+G L++LSEQ+L+DC
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERR- 59
Query: 196 NNGCLGGSREKAFAYIIQN 214
++GC GG A Y+ +N
Sbjct: 60 SHGCKGGYPPYALEYVAKN 78
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Query: 206 KAFAYIIQNQGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVR 265
K + + GIF G CGT++DHAVT VG+G + LIKNSWG WG+ GY++I R
Sbjct: 137 KGRPFQLYKGGIFEGPCGTKVDHAVTAVGYGKSGGKGYI-LIKNSWGTAWGEKGYIRIKR 195
Query: 266 ----DEGLCGIGTRSSYP 279
G+CG+ S YP
Sbjct: 196 APGNSPGVCGLYKSSYYP 213
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 58/84 (69%), Gaps = 2/84 (2%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTN- 194
+P S+DWR+KG VT +K Q CG CWAF+AV A+E K+++G L+ LS Q L+DCST
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 195 -GNNGCLGGSREKAFAYIIQNQGI 217
GN GC GG AF YII N+GI
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGI 84
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 203 SREKAFAYIIQNQGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMK 262
+R +F ++ ++ + C ++H V +VG+G +G YWL+KNSWG+ +G+ GY++
Sbjct: 140 ARHPSF-FLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEYWLVKNSWGHNFGEEGYIR 197
Query: 263 IVRDEG-LCGIGTRSSYP 279
+ R++G CGI + SYP
Sbjct: 198 MARNKGNHCGIASFPSYP 215
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 58/84 (69%), Gaps = 2/84 (2%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTN- 194
+P S+DWR+KG VT +K Q CG CWAF+AV A+E K+++G L+ LS Q L+DCST
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTKK 60
Query: 195 -GNNGCLGGSREKAFAYIIQNQGI 217
GN GC GG AF YII N+GI
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGI 84
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 203 SREKAFAYIIQNQGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMK 262
+R +F ++ ++ + C ++H V +VG+G +G YWL+KNSWG+ +G+ GY++
Sbjct: 140 ARHPSF-FLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEYWLVKNSWGHNFGEKGYIR 197
Query: 263 IVRDEG-LCGIGTRSSYP 279
+ R++G CGI + SYP
Sbjct: 198 MARNKGNHCGIASFPSYP 215
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 58/84 (69%), Gaps = 2/84 (2%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTN- 194
+P S+DWR+KG VT +K Q CG CWAF+AV A+E K+++G L+ LS Q L+DCST
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 195 -GNNGCLGGSREKAFAYIIQNQGI 217
GN GC GG AF YII N+GI
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGI 85
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 203 SREKAFAYIIQNQGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMK 262
+R +F ++ ++ + C ++H V +VG+G +G YWL+KNSWG+ +G+ GY++
Sbjct: 141 ARHPSF-FLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEYWLVKNSWGHNFGEEGYIR 198
Query: 263 IVRDEG-LCGIGTRSSYP 279
+ R++G CGI + SYP
Sbjct: 199 MARNKGNHCGIASFPSYP 216
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 58/84 (69%), Gaps = 2/84 (2%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTN- 194
+P S+DWR+KG VT +K Q CG CWAF+AV A+E K+++G L+ LS Q L+DCST
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 195 -GNNGCLGGSREKAFAYIIQNQGI 217
GN GC GG AF YII N+GI
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGI 85
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 203 SREKAFAYIIQNQGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMK 262
+R +F ++ ++ + C ++H V +VG+G +G YWL+KNSWG+ +G+ GY++
Sbjct: 141 ARHPSF-FLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEYWLVKNSWGHNFGEEGYIR 198
Query: 263 IVRDEG-LCGIGTRSSYP 279
+ R++G CGI + SYP
Sbjct: 199 MARNKGNHCGIASFPSYP 216
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 58/84 (69%), Gaps = 2/84 (2%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTN- 194
+P S+DWR+KG VT +K Q CG CWAF+AV A+E K+++G L+ LS Q L+DCST
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 195 -GNNGCLGGSREKAFAYIIQNQGI 217
GN GC GG AF YII N+GI
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGI 84
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 203 SREKAFAYIIQNQGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMK 262
+R +F ++ ++ + C ++H V +VG+G +G YWL+KNSWG+ +G+ GY++
Sbjct: 140 ARHPSF-FLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEYWLVKNSWGHNFGEEGYIR 197
Query: 263 IVRDEG-LCGIGTRSSYP 279
+ R++G CGI + SYP
Sbjct: 198 MARNKGNHCGIASFPSYP 215
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 58/84 (69%), Gaps = 2/84 (2%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTN- 194
+P S+DWR+KG VT +K Q CG CWAF+AV A+E K+++G L+ LS Q L+DCST
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 195 -GNNGCLGGSREKAFAYIIQNQGI 217
GN GC GG AF YII N+GI
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGI 84
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 203 SREKAFAYIIQNQGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMK 262
+R +F ++ ++ + C ++H V +VG+G +G YWL+KNSWG+ +G+ GY++
Sbjct: 140 ARHPSF-FLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEYWLVKNSWGHNFGEKGYIR 197
Query: 263 IVRDEG-LCGIGTRSSYP 279
+ R++G CGI + SYP
Sbjct: 198 MARNKGNHCGIASFPSYP 215
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 97.8 bits (242), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 58/84 (69%), Gaps = 2/84 (2%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTN- 194
+P S+DWR+KG VT +K Q CG CWAF+AV A+E K+++G L+ LS Q L+DCST
Sbjct: 4 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 63
Query: 195 -GNNGCLGGSREKAFAYIIQNQGI 217
GN GC GG AF YII N+GI
Sbjct: 64 YGNKGCNGGFMTTAFQYIIDNKGI 87
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 203 SREKAFAYIIQNQGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMK 262
+R +F ++ ++ + C ++H V +VG+G +G YWL+KNSWG+ +G+ GY++
Sbjct: 143 ARHPSF-FLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEYWLVKNSWGHNFGEEGYIR 200
Query: 263 IVRDEG-LCGIGTRSSYP 279
+ R++G CGI + SYP
Sbjct: 201 MARNKGNHCGIASFPSYP 218
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 58/84 (69%), Gaps = 2/84 (2%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTN- 194
+P S+DWR+KG VT +K Q CG CWAF+AV A+E K+++G L+ LS Q L+DCST
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVTLSAQNLVDCSTEK 60
Query: 195 -GNNGCLGGSREKAFAYIIQNQGI 217
GN GC GG AF YII N+GI
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGI 84
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 203 SREKAFAYIIQNQGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMK 262
+R +F ++ ++ + C ++H V +VG+G +G YWL+KNSWG+ +G+ GY++
Sbjct: 140 ARHPSF-FLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEYWLVKNSWGHNFGEEGYIR 197
Query: 263 IVRDEG-LCGIGTRSSYP 279
+ R++G CGI + SYP
Sbjct: 198 MARNKGNHCGIASFPSYP 215
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 97.8 bits (242), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 58/84 (69%), Gaps = 1/84 (1%)
Query: 135 DVPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCS-T 193
+ P S+DWR+KG VTP+KNQ +CG CWAF+A A+EG ++G LI LSEQ L+DCS
Sbjct: 1 EAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP 60
Query: 194 NGNNGCLGGSREKAFAYIIQNQGI 217
GN GC GG + AF Y+ N G+
Sbjct: 61 QGNEGCNGGLMDYAFQYVQDNGGL 84
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 6/77 (7%)
Query: 209 AYIIQNQGI-FNGVCGTQ-LDHAVTIVGFG---TTEDGANYWLIKNSWGNTWGDAGYMKI 263
+++ +GI F C ++ +DH V +VG+G T D YWL+KNSWG WG GY+K+
Sbjct: 143 SFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKM 202
Query: 264 VRD-EGLCGIGTRSSYP 279
+D CGI + +SYP
Sbjct: 203 AKDRRNHCGIASAASYP 219
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 97.1 bits (240), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCS-TN 194
P S+DWR+KG VTP+KNQ +CG CWAF+A A+EG ++G LI LSEQ L+DCS
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 195 GNNGCLGGSREKAFAYIIQNQGI 217
GN GC GG + AF Y+ N G+
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGL 83
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCS-TN 194
P S+DWR+KG VTP+KNQ +CG CWAF+A A+EG ++G LI LSEQ L+DCS
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 195 GNNGCLGGSREKAFAYIIQNQGI 217
GN GC GG + AF Y+ N G+
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGL 83
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 6/77 (7%)
Query: 209 AYIIQNQGI-FNGVCGTQ-LDHAVTIVGFG---TTEDGANYWLIKNSWGNTWGDAGYMKI 263
+++ +GI F C ++ +DH V +VG+G T D YWL+KNSWG WG GY+K+
Sbjct: 142 SFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKM 201
Query: 264 VRD-EGLCGIGTRSSYP 279
+D CGI + +SYP
Sbjct: 202 AKDRRNHCGIASAASYP 218
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCS-TN 194
P S+DWR+KG VTP+KNQ +CG CWAF+A A+EG ++G LI LSEQ L+DCS
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 195 GNNGCLGGSREKAFAYIIQNQGI 217
GN GC GG + AF Y+ N G+
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGL 83
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 6/77 (7%)
Query: 209 AYIIQNQGI-FNGVCGTQ-LDHAVTIVGFG---TTEDGANYWLIKNSWGNTWGDAGYMKI 263
+++ +GI F C ++ +DH V +VG+G T D YWL+KNSWG WG GY+K+
Sbjct: 142 SFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKM 201
Query: 264 VRD-EGLCGIGTRSSYP 279
+D CGI + +SYP
Sbjct: 202 AKDRRNHCGIASAASYP 218
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 60/89 (67%), Gaps = 1/89 (1%)
Query: 130 NLSMTDVPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLL 189
N+ +++P +DWR +G VTP+K+Q++CG CWAF+ A+EG ++G L+ LSEQ+L+
Sbjct: 1 NVLPSELPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELM 60
Query: 190 DCS-TNGNNGCLGGSREKAFAYIIQNQGI 217
DCS GN C GG AF Y++ + GI
Sbjct: 61 DCSRAEGNQSCSGGEMNDAFQYVLDSGGI 89
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 47/71 (66%), Gaps = 4/71 (5%)
Query: 214 NQGIFNGVCGTQLDHAVTIVGFGT-TEDGANYWLIKNSWGNTWGDAGYMKIVR---DEGL 269
++G+F+ CGT LDH V +VG+GT E ++W++KNSWG WG GYM + +EG
Sbjct: 153 HEGVFDASCGTDLDHGVLLVGYGTDKESKKDFWIMKNSWGTGWGRDGYMYMAMHKGEEGQ 212
Query: 270 CGIGTRSSYPL 280
CG+ +S+P+
Sbjct: 213 CGLLLDASFPV 223
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCS-TN 194
+P S+DWR KG VTP+KNQK+CG WAF+A A+EG ++G L+ LSEQ L+DCS
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSXWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 195 GNNGCLGGSREKAFAYIIQNQGI 217
GN GC GG +AF Y+ +N G+
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGL 83
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 38/58 (65%), Gaps = 4/58 (6%)
Query: 226 LDHAVTIVGFG---TTEDGANYWLIKNSWGNTWGDAGYMKIVRDE-GLCGIGTRSSYP 279
LDH V +VG+G D + YWL+KNSWG WG GY+KI +D+ CGI T +SYP
Sbjct: 162 LDHGVLVVGYGFEGANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYP 219
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCS-TN 194
+P +DWR GAV IK+Q +CG CWAF+ +AAVEGI KI +G+LI LSEQ+L+DC T
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSCWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 195 GNNGCLGGSREKAFAYIIQNQGI 217
GC GG F +II N GI
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGI 83
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 52/68 (76%), Gaps = 4/68 (5%)
Query: 216 GIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRD---EGLCGI 272
GIF G CGT +DHAVTIVG+GT E G +YW++KNSWG TWG+ GYM+I R+ G CGI
Sbjct: 150 GIFTGPCGTAVDHAVTIVGYGT-EGGIDYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGI 208
Query: 273 GTRSSYPL 280
++SYP+
Sbjct: 209 AKKASYPV 216
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 94.4 bits (233), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 57/84 (67%), Gaps = 2/84 (2%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTN- 194
+P S+DWR+KG VT +K Q CG WAF+AV A+E K+++G L+ LS Q L+DCST
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 195 -GNNGCLGGSREKAFAYIIQNQGI 217
GN GC GG AF YII N+GI
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGI 84
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 203 SREKAFAYIIQNQGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMK 262
+R +F ++ ++ + C ++H V +VG+G +G YWL+KNSWG+ +G+ GY++
Sbjct: 140 ARHPSF-FLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEYWLVKNSWGHNFGEEGYIR 197
Query: 263 IVRDEG-LCGIGTRSSYP 279
+ R++G CGI + SYP
Sbjct: 198 MARNKGNHCGIASFPSYP 215
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 94.4 bits (233), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 57/84 (67%), Gaps = 2/84 (2%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTN- 194
+P S+DWR+KG VT +K Q CG WAF+AV A+E K+++G L+ LS Q L+DCST
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 195 -GNNGCLGGSREKAFAYIIQNQGI 217
GN GC GG AF YII N+GI
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGI 85
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 203 SREKAFAYIIQNQGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMK 262
+R +F ++ ++ + C ++H V +VG+G +G YWL+KNSWG+ +G+ GY++
Sbjct: 141 ARHPSF-FLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEYWLVKNSWGHNFGEEGYIR 198
Query: 263 IVRDEG-LCGIGTRSSYP 279
+ R++G CGI + SYP
Sbjct: 199 MARNKGNHCGIASFPSYP 216
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 94.4 bits (233), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Query: 135 DVPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCS-T 193
+ P S+DWR+KG VTP+KNQ +CG WAF+A A+EG ++G LI LSEQ L+DCS
Sbjct: 1 EAPRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP 60
Query: 194 NGNNGCLGGSREKAFAYIIQNQGI 217
GN GC GG + AF Y+ N G+
Sbjct: 61 QGNEGCNGGLMDYAFQYVQDNGGL 84
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 6/77 (7%)
Query: 209 AYIIQNQGI-FNGVCGTQ-LDHAVTIVGFG---TTEDGANYWLIKNSWGNTWGDAGYMKI 263
+++ +GI F C ++ +DH V +VG+G T D YWL+KNSWG WG GY+K+
Sbjct: 143 SFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKM 202
Query: 264 VRD-EGLCGIGTRSSYP 279
+D CGI + +SYP
Sbjct: 203 AKDRRNHCGIASAASYP 219
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 94.4 bits (233), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 57/84 (67%), Gaps = 2/84 (2%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTN- 194
+P S+DWR+KG VT +K Q CG WAF+AV A+E K+++G L+ LS Q L+DCST
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 195 -GNNGCLGGSREKAFAYIIQNQGI 217
GN GC GG AF YII N+GI
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGI 84
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 203 SREKAFAYIIQNQGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMK 262
+R +F ++ ++ + C ++H V +VG+G +G YWL+KNSWG+ +G+ GY++
Sbjct: 140 ARHPSF-FLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEYWLVKNSWGHNFGEEGYIR 197
Query: 263 IVRDEG-LCGIGTRSSYP 279
+ R++G CGI + SYP
Sbjct: 198 MARNKGNHCGIASFPSYP 215
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 94.4 bits (233), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 57/84 (67%), Gaps = 2/84 (2%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTN- 194
+P S+DWR+KG VT +K Q CG WAF+AV A+E K+++G L+ LS Q L+DCST
Sbjct: 3 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 62
Query: 195 -GNNGCLGGSREKAFAYIIQNQGI 217
GN GC GG AF YII N+GI
Sbjct: 63 YGNKGCNGGFMTTAFQYIIDNKGI 86
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 203 SREKAFAYIIQNQGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMK 262
+R +F ++ ++ + C ++H V +VG+G +G YWL+KNSWG+ +G+ GY++
Sbjct: 142 ARHPSF-FLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEYWLVKNSWGHNFGEEGYIR 199
Query: 263 IVRDEG-LCGIGTRSSYP 279
+ R++G CGI + SYP
Sbjct: 200 MARNKGNHCGIASFPSYP 217
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 94.0 bits (232), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCS-TN 194
+P+ +DWR GAV IK+Q ECG CWAF+A+A VEGI KI +G LI LSEQ+L+DC T
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQ 60
Query: 195 GNNGCLGGSREKAFAYIIQNQGI 217
GC GG F +II N GI
Sbjct: 61 NTRGCNGGYITDGFQFIINNGGI 83
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 52/70 (74%), Gaps = 4/70 (5%)
Query: 214 NQGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRD---EGLC 270
+ GIF G CGT +DHAVTIVG+GT E G +YW++KNSW TWG+ GYM+I+R+ G C
Sbjct: 148 SSGIFTGPCGTAIDHAVTIVGYGT-EGGIDYWIVKNSWDTTWGEEGYMRILRNVGGAGTC 206
Query: 271 GIGTRSSYPL 280
GI T SYP+
Sbjct: 207 GIATMPSYPV 216
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 94.0 bits (232), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCS-TN 194
P S+DWR+KG VTP+KNQ +CG WAF+A A+EG ++G LI LSEQ L+DCS
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 195 GNNGCLGGSREKAFAYIIQNQGI 217
GN GC GG + AF Y+ N G+
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGL 83
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 6/77 (7%)
Query: 209 AYIIQNQGI-FNGVCGTQ-LDHAVTIVGFG---TTEDGANYWLIKNSWGNTWGDAGYMKI 263
+++ +GI F C ++ +DH V +VG+G T D YWL+KNSWG WG GY+K+
Sbjct: 142 SFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKM 201
Query: 264 VRD-EGLCGIGTRSSYP 279
+D CGI + +SYP
Sbjct: 202 AKDRRNHCGIASAASYP 218
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 56/78 (71%), Gaps = 1/78 (1%)
Query: 137 PTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNGN 196
P S+DWR KGAVTP+KNQ CG WAF+ +A VEGI KI +GNL++LSEQ+L+DC + +
Sbjct: 2 PQSIDWRAKGAVTPVKNQGACGSXWAFSTIATVEGINKIVTGNLLELSEQELVDCDKH-S 60
Query: 197 NGCLGGSREKAFAYIIQN 214
GC GG + + Y+ N
Sbjct: 61 YGCKGGYQTTSLQYVANN 78
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 49/69 (71%), Gaps = 5/69 (7%)
Query: 216 GIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVR----DEGLCG 271
G+F+G CGT+LDHAVT VG+GT+ DG NY +IKNSWG WG+ GYM++ R +G CG
Sbjct: 147 GVFDGPCGTKLDHAVTAVGYGTS-DGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCG 205
Query: 272 IGTRSSYPL 280
+ S YP
Sbjct: 206 VYKSSYYPF 214
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCS-TN 194
P S+DWR+KG VTP+KNQ +CG WAF+A A+EG ++G LI LSEQ L+DCS
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 195 GNNGCLGGSREKAFAYIIQNQGI 217
GN GC GG + AF Y+ N G+
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGL 83
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCS-TN 194
P S+DWR+KG VTP+KNQ +CG WAF+A A+EG ++G LI LSEQ L+DCS
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 195 GNNGCLGGSREKAFAYIIQNQGI 217
GN GC GG + AF Y+ N G+
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGL 83
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 6/77 (7%)
Query: 209 AYIIQNQGI-FNGVCGTQ-LDHAVTIVGFG---TTEDGANYWLIKNSWGNTWGDAGYMKI 263
+++ +GI F C ++ +DH V +VG+G T D YWL+KNSWG WG GY+K+
Sbjct: 142 SFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDDNKYWLVKNSWGEEWGMGGYVKM 201
Query: 264 VRD-EGLCGIGTRSSYP 279
+D CGI + +SYP
Sbjct: 202 AKDRRNHCGIASAASYP 218
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCS-TN 194
P S+DWR+KG VTP+KNQ +CG WAF+A A+EG ++G LI LSEQ L+DCS
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 195 GNNGCLGGSREKAFAYIIQNQGI 217
GN GC GG + AF Y+ N G+
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGL 83
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 6/77 (7%)
Query: 209 AYIIQNQGI-FNGVCGTQ-LDHAVTIVGFG---TTEDGANYWLIKNSWGNTWGDAGYMKI 263
+++ +GI F C ++ +DH V +VG+G T D YWL+KNSWG WG GY+K+
Sbjct: 142 SFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKM 201
Query: 264 VRD-EGLCGIGTRSSYP 279
+D CGI + +SYP
Sbjct: 202 AKDRRNHCGIASAASYP 218
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNG 195
P S+D+R+KG VTP+KNQ +CG CWAF++V A+EG K ++G L+ LS Q L+DC +
Sbjct: 1 APDSVDYREKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE- 59
Query: 196 NNGCLGGSREKAFAYIIQNQGI 217
N+GC GG AF Y+ +N+GI
Sbjct: 60 NDGCGGGYMTNAFQYVQKNRGI 81
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%), Gaps = 2/55 (3%)
Query: 226 LDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRDE-GLCGIGTRSSYP 279
L+HAV VG+G ++ G +W+IKNSWG WG GY+K+ R++ CGI +S+P
Sbjct: 160 LNHAVLAVGYGESK-GNKHWIIKNSWGENWGMGGYIKMARNKNNACGIANLASFP 213
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 57/79 (72%), Gaps = 1/79 (1%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNG 195
+P S+DWR KGAVTP+K+Q C CWAF+ VA VEGI KI++GNL++LSEQ+L+DC
Sbjct: 1 LPESVDWRAKGAVTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVELSEQELVDCDLQ- 59
Query: 196 NNGCLGGSREKAFAYIIQN 214
+ GC G + + Y+ QN
Sbjct: 60 SYGCNRGYQSTSLQYVAQN 78
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 44/69 (63%), Gaps = 5/69 (7%)
Query: 216 GIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVR----DEGLCG 271
GIF G CGT++DHAVT VG+G + LIKNSWG WG+ GY++I R G+CG
Sbjct: 147 GIFEGSCGTKVDHAVTAVGYGKSGGKGYI-LIKNSWGPGWGENGYIRIRRASGNSPGVCG 205
Query: 272 IGTRSSYPL 280
+ S YP+
Sbjct: 206 VYRSSYYPI 214
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNG 195
P S+D+R KG VTP+KNQ +CG CWAF++V A+EG K ++G L+ LS Q L+DC +
Sbjct: 1 TPDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE- 59
Query: 196 NNGCLGGSREKAFAYIIQNQGI 217
N+GC GG AF Y+ +N+GI
Sbjct: 60 NDGCGGGYMTNAFQYVQRNRGI 81
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 38/55 (69%), Gaps = 2/55 (3%)
Query: 226 LDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRDE-GLCGIGTRSSYP 279
L+HAV VG+G + G +W+IKNSWG +WG+ GY+ + R++ CGI +S+P
Sbjct: 160 LNHAVLAVGYGI-QKGNKHWIIKNSWGESWGNKGYILMARNKNNACGIANLASFP 213
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNG 195
P S+D+R KG VTP+KNQ +CG CWAF++V A+EG K ++G L+ LS Q L+DC +
Sbjct: 3 APDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE- 61
Query: 196 NNGCLGGSREKAFAYIIQNQGI 217
N+GC GG AF Y+ +N+GI
Sbjct: 62 NDGCGGGYMTNAFQYVQKNRGI 83
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 226 LDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRDE-GLCGIGTRSSYP 279
L+HAV VG+G + G +W+IKNSWG WG+ GY+ + R++ CGI +S+P
Sbjct: 162 LNHAVLAVGYGI-QKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFP 215
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNG 195
P S+D+R KG VTP+KNQ +CG CWAF++V A+EG K ++G L+ LS Q L+DC +
Sbjct: 1 APDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE- 59
Query: 196 NNGCLGGSREKAFAYIIQNQGI 217
N+GC GG AF Y+ +N+GI
Sbjct: 60 NDGCGGGYMTNAFQYVQKNRGI 81
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 226 LDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRDE-GLCGIGTRSSYP 279
L+HAV VG+G + G +W+IKNSWG WG+ GY+ + R++ CGI +S+P
Sbjct: 160 LNHAVLAVGYGI-QKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFP 213
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 58/81 (71%), Gaps = 1/81 (1%)
Query: 137 PTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNGN 196
P S+D+R KG VTP+KNQ +CG CWAF++V A+EG K ++G L+ LS Q L+DC + N
Sbjct: 1 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE-N 59
Query: 197 NGCLGGSREKAFAYIIQNQGI 217
+GC GG AF Y+ +N+GI
Sbjct: 60 DGCGGGYMTNAFQYVQKNRGI 80
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 226 LDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRDE-GLCGIGTRSSYP 279
L+HAV VG+G + G +W+IKNSWG WG+ GY+ + R++ CGI +S+P
Sbjct: 159 LNHAVLAVGYGI-QKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFP 212
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 91.3 bits (225), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCS-TN 194
+P+ +DWR GAV IK+Q ECG WAF+A+A VEGI KI SG+LI LSEQ+L+DC T
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGXWAFSAIATVEGINKITSGSLISLSEQELIDCGRTQ 60
Query: 195 GNNGCLGGSREKAFAYIIQNQGI 217
GC GG F +II + GI
Sbjct: 61 NTRGCDGGYITDGFQFIINDGGI 83
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 50/68 (73%), Gaps = 4/68 (5%)
Query: 216 GIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRD---EGLCGI 272
GIF G CGT +DHA+ IVG+GT E G +YW++KNSW TWG+ GYM+I+R+ G CGI
Sbjct: 150 GIFTGPCGTAVDHAIVIVGYGT-EGGVDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGI 208
Query: 273 GTRSSYPL 280
T SYP+
Sbjct: 209 ATMPSYPV 216
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 91.3 bits (225), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCS-TN 194
+P +DWR GAV IK+Q +CG WAF+ +AAVEGI KI +G+LI LSEQ+L+DC T
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSXWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 195 GNNGCLGGSREKAFAYIIQNQGI 217
GC GG F +II N GI
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGI 83
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 52/68 (76%), Gaps = 4/68 (5%)
Query: 216 GIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRD---EGLCGI 272
GIF G CGT +DHAVTIVG+GT E G +YW++KNSWG TWG+ GYM+I R+ G CGI
Sbjct: 150 GIFTGPCGTAVDHAVTIVGYGT-EGGIDYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGI 208
Query: 273 GTRSSYPL 280
++SYP+
Sbjct: 209 AKKASYPV 216
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 91.3 bits (225), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 58/96 (60%), Gaps = 8/96 (8%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNG 195
P S+DWR KGAVT +K+Q CG CWAF A A+EGI I +G LI +SEQQ++DC T
Sbjct: 1 APASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTX- 59
Query: 196 NNGCLGGSREKAFAYIIQNQGI-------FNGVCGT 224
GG + AF ++I N GI + GV GT
Sbjct: 60 XXXXXGGDADDAFRWVITNGGIASDANYPYTGVDGT 95
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 8/72 (11%)
Query: 216 GIFNGVCGTQ----LDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRD----E 267
GIF G + +DH V IVG+G+ A+YW++KNSWG WG GY+ I R+ +
Sbjct: 146 GIFAGSSCSDDPATVDHTVLIVGYGSNGTNADYWIVKNSWGTEWGIDGYILIRRNTNRPD 205
Query: 268 GLCGIGTRSSYP 279
G+C I SYP
Sbjct: 206 GVCAIDAWGSYP 217
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 90.9 bits (224), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCS-TN 194
P S+DWR+KG VTP+KNQ +CG +AF+A A+EG ++G LI LSEQ L+DCS
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGASYAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 195 GNNGCLGGSREKAFAYIIQNQGI 217
GN GC GG + AF Y+ N G+
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGL 83
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 226 LDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRD-EGLCGIGTRSSYP 279
L+HA+ +VG+G + YWL+KNSWG WG GY+K+ +D CGI + +SYP
Sbjct: 161 LNHAMLVVGYGFISNNQKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYP 215
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 90.5 bits (223), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 62/109 (56%), Gaps = 12/109 (11%)
Query: 137 PTSLDWRDKGA-VTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNG 195
P S+DWR KG V+P+KNQ CG CW F+ A+E I +G ++ L+EQQL+DC+ N
Sbjct: 2 PPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNF 61
Query: 196 NN-GCLGGSREKAFAYIIQNQGIF----------NGVCGTQLDHAVTIV 233
NN GC GG +AF YI N+GI + C Q D A+ V
Sbjct: 62 NNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDHCKFQPDKAIAFV 110
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 225 QLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRDEGLCGIGTRSSYPL 280
+++HAV VG+G E+G YW++KNSWG WG GY I R + +CG+ +SYP+
Sbjct: 163 KVNHAVLAVGYGE-ENGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACASYPI 217
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 57/82 (69%), Gaps = 1/82 (1%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNG 195
P S+D+R KG VTP+KNQ +CG CWAF++V A+EG K +G L+ L+ Q L+DC +
Sbjct: 1 APDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLNLAPQNLVDCVSE- 59
Query: 196 NNGCLGGSREKAFAYIIQNQGI 217
N+GC GG AF Y+ +N+GI
Sbjct: 60 NDGCGGGYMTNAFQYVQRNRGI 81
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 39/55 (70%), Gaps = 2/55 (3%)
Query: 226 LDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRDE-GLCGIGTRSSYP 279
L+HAV VG+G + G +W+IKNSWG +WG+AGY+ + R++ CGI +S+P
Sbjct: 160 LNHAVLAVGYGI-QAGNKHWIIKNSWGESWGNAGYILMARNKNNACGIANLASFP 213
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 57/79 (72%), Gaps = 1/79 (1%)
Query: 139 SLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNGNNG 198
S+D+R KG VTP+KNQ +CG CWAF++V A+EG K ++G L+ LS Q L+DC + N+G
Sbjct: 2 SVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE-NDG 60
Query: 199 CLGGSREKAFAYIIQNQGI 217
C GG AF Y+ +N+GI
Sbjct: 61 CGGGYMTNAFQYVQKNRGI 79
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 226 LDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRDE-GLCGIGTRSSYP 279
L+HAV VG+G + G +W+IKNSWG WG+ GY+ + R++ CGI +S+P
Sbjct: 158 LNHAVLAVGYGI-QKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFP 211
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNG 195
P ++DWR+KGAVTP+K+Q +CG CWAF+ + +EG ++ L+ LSEQ L+ C T
Sbjct: 1 APAAVDWREKGAVTPVKDQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCDTI- 59
Query: 196 NNGCLGGSREKAFAYIIQNQG 216
+ GC GG + AF +I+ + G
Sbjct: 60 DFGCGGGLMDNAFNWIVNSNG 80
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 206 KAFAYIIQNQGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVR 265
A +++ N GI QLDH V +VG+ + YW+IKNSW N WG+ GY++I +
Sbjct: 140 DATSFMDYNGGILTSCTSEQLDHGVLLVGYNDASN-PPYWIIKNSWSNMWGEDGYIRIEK 198
Query: 266 DEGLC 270
C
Sbjct: 199 GTNQC 203
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Query: 135 DVPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTN 194
D P S DW KG +T +K Q +CG WAF+A A+E I +GNL+ LSEQ+L+DC +
Sbjct: 1 DAPESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDC-VD 59
Query: 195 GNNGCLGGSREKAFAYIIQNQGI 217
+ GC G ++F +++++ GI
Sbjct: 60 ESEGCYNGWHYQSFEWVVKHGGI 82
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 48/72 (66%), Gaps = 8/72 (11%)
Query: 216 GIFNGV-CGTQ--LDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRDE----G 268
GI++G C + ++H V IVG+G+ EDG +YW+ KNSWG WG GY++I R+ G
Sbjct: 153 GIYDGGNCSSPYGINHFVLIVGYGS-EDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLG 211
Query: 269 LCGIGTRSSYPL 280
+CG+ +SYP+
Sbjct: 212 VCGMNYFASYPI 223
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 138 TSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNGNN 197
+ DWR VTP+K+QK CG CWAF+++ +VE IR LI LSEQ+L+DCS N
Sbjct: 20 AAYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFK-NY 78
Query: 198 GCLGGSREKAFAYIIQNQGI 217
GC GG AF +I+ GI
Sbjct: 79 GCNGGLINNAFEDMIELGGI 98
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 13/84 (15%)
Query: 210 YIIQNQGIFNGVCGTQLDHAVTIVGFGTTE---------DGANYWLIKNSWGNTWGDAGY 260
+ +GIF+G CG QL+HAV +VGFG E + Y++IKNSWG WG+ G+
Sbjct: 156 FAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGF 215
Query: 261 MKIVRDE-GL---CGIGTRSSYPL 280
+ I DE GL CG+GT + PL
Sbjct: 216 INIETDESGLMRKCGLGTDAFIPL 239
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/82 (57%), Positives = 58/82 (70%), Gaps = 2/82 (2%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNG 195
+PTS+DWR KGAVTP++NQ CG CW F++VAAVEGI KI +G L+ LSEQ+LLDC
Sbjct: 1 IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERR- 59
Query: 196 NNGCLGGSREKAFAYIIQNQGI 217
+ GC GG A Y + N GI
Sbjct: 60 SYGCRGGFPLYALQY-VANSGI 80
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 9/68 (13%)
Query: 216 GIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVR----DEGLCG 271
GIF G CGT +DHAV VG+G +Y LIKNSWG WG+ GY++I R +G CG
Sbjct: 147 GIFAGPCGTSIDHAVAAVGYGN-----DYILIKNSWGTGWGEGGYIRIKRGSGNPQGACG 201
Query: 272 IGTRSSYP 279
+ + S +P
Sbjct: 202 VLSDSVFP 209
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 139 SLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNGNNG 198
+ DWR G VTP+K+Q CG CWAF++V +VE IR L SEQ+L+DCS NNG
Sbjct: 23 AYDWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSVK-NNG 81
Query: 199 CLGGSREKAFAYIIQNQGI 217
C GG AF +I G+
Sbjct: 82 CYGGYITNAFDDMIDLGGL 100
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 13/78 (16%)
Query: 216 GIFNGVCGTQLDHAVTIVGFGT----TEDGAN-----YWLIKNSWGNTWGDAGYMKIVRD 266
G ++G CG +HAV +VG+G ED Y++IKNSWG+ WG+ GY+ + D
Sbjct: 164 GFYDGECGAAPNHAVILVGYGMKDIYNEDTGRMEKFYYYIIKNSWGSDWGEGGYINLETD 223
Query: 267 EG----LCGIGTRSSYPL 280
E C IGT + PL
Sbjct: 224 ENGYKKTCSIGTEAYVPL 241
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 138 TSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNGNN 197
+ DWR VTP+K+QK CG WAF+++ +VE IR LI LSEQ+L+DCS N
Sbjct: 19 AAYDWRLHSGVTPVKDQKNCGSAWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFK-NY 77
Query: 198 GCLGGSREKAFAYIIQNQGI 217
GC GG AF +I+ GI
Sbjct: 78 GCNGGLINNAFEDMIELGGI 97
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 13/84 (15%)
Query: 210 YIIQNQGIFNGVCGTQLDHAVTIVGFGTTE---------DGANYWLIKNSWGNTWGDAGY 260
+ +GIF+G CG QL+HAV +VGFG E + Y++IKNSWG WG+ G+
Sbjct: 155 FAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGF 214
Query: 261 MKIVRDE-GL---CGIGTRSSYPL 280
+ I DE GL CG+GT + PL
Sbjct: 215 INIETDESGLMRKCGLGTDAFIPL 238
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 137 PTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNGN 196
P ++DWR +GAVT +K+Q +CG CWAF+A+ VE + L LSEQ L+ C +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKT-D 60
Query: 197 NGCLGGSREKAFAYIIQ 213
+GC GG AF +I+Q
Sbjct: 61 SGCSGGLMNNAFEWIVQ 77
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 207 AFAYIIQNQGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRD 266
A +++ G+ LDH V +VG+ + YW+IKNSW WG+ GY++I +
Sbjct: 141 ASSWMTYTGGVMTSCVSEALDHGVLLVGYNDSA-AVPYWIIKNSWTTQWGEEGYIRIAKG 199
Query: 267 EGLC 270
C
Sbjct: 200 SNQC 203
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 137 PTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNGN 196
P ++DWR +GAVT +K+Q +CG CWAF+A+ VE + L LSEQ L+ C +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKT-D 60
Query: 197 NGCLGGSREKAFAYIIQ 213
+GC GG AF +I+Q
Sbjct: 61 SGCSGGLMNNAFEWIVQ 77
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 207 AFAYIIQNQGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRD 266
A +++ G+ QLDH V +VG+ + YW+IKNSW WG+ GY++I +
Sbjct: 141 ASSWMTYTGGVMTSCVSEQLDHGVLLVGYNDSA-AVPYWIIKNSWTTQWGEEGYIRIAKG 199
Query: 267 EGLCGIGTRSS 277
C + +S
Sbjct: 200 SNQCLVKEEAS 210
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 137 PTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNGN 196
P ++DWR +GAVT +K+Q +CG CWAF+A+ VE + L L+EQ L+ C +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKT-D 60
Query: 197 NGCLGGSREKAFAYIIQ 213
+GC GG AF +I+Q
Sbjct: 61 SGCSGGLMNNAFEWIVQ 77
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 207 AFAYIIQNQGIFNGVCGTQLDHAVTIVGFGTTEDGA--NYWLIKNSWGNTWGDAGYMKIV 264
A +++ G+ QLDH V +VG+ DGA YW+IKNSW WG+ GY++I
Sbjct: 141 ASSWMTYTGGVMTSCVSEQLDHGVLLVGY---NDGAAVPYWIIKNSWTTQWGEEGYIRIA 197
Query: 265 RDEGLC 270
+ C
Sbjct: 198 KGSNQC 203
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 137 PTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNGN 196
P ++DWR +GAVT +K+Q +CG CWAF+A+ VE + L L+EQ L+ C +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKT-D 60
Query: 197 NGCLGGSREKAFAYIIQ 213
+GC GG AF +I+Q
Sbjct: 61 SGCSGGLMNNAFEWIVQ 77
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 207 AFAYIIQNQGIFNGVCGTQLDHAVTIVGFGTTEDGA--NYWLIKNSWGNTWGDAGYMKIV 264
A +++ G+ QLDH V +VG+ DGA YW+IKNSW WG+ GY++I
Sbjct: 141 ASSWMTYTGGVMTSCVSEQLDHGVLLVGY---NDGAAVPYWIIKNSWTTQWGEEGYIRIA 197
Query: 265 RDEGLC 270
+ C
Sbjct: 198 KGSNQC 203
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 131 LSMTDVPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLD 190
++ +VP+ LD R VTPI+ Q CG CWAF+ VAA E + LSEQ+L+D
Sbjct: 6 INSVNVPSELDLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQELVD 65
Query: 191 CSTNGNNGCLGGSREKAFAYIIQN 214
C++ +GC G + + YI QN
Sbjct: 66 CAS--QHGCHGDTIPRGIEYIQQN 87
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 28/33 (84%), Gaps = 1/33 (3%)
Query: 228 HAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGY 260
HAV IVG+G+T+ G +YW+++NSW TWGD+GY
Sbjct: 171 HAVNIVGYGSTQ-GDDYWIVRNSWDTTWGDSGY 202
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 77/174 (44%), Gaps = 11/174 (6%)
Query: 42 SVVEIHEKWMAQHGRSYKDELEKEMRLKIFKENLEYIEKANKEGNRTYKLGTNQFSDLTN 101
S ++ E++ +SY ++E K F E+++Y++ N SDL+
Sbjct: 3 SSIKTFEEYKKAFNKSYATFEDEEAARKNFLESVKYVQSNGG--------AINHLSDLSL 54
Query: 102 DEFRALYTGYKMPSPSHRXXXXXXFKYQNLSMT-DVPTSLDWRDKGAVTPIKNQKECGCC 160
DEF+ + + + S+ + P +D R VTPI+ Q CG
Sbjct: 55 DEFKNRFLMSAEAFEHLKTQFDLNAETNACSINGNAPAEIDLRQMRTVTPIRMQGGCGSA 114
Query: 161 WAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNGNNGCLGGSREKAFAYIIQN 214
WAF+ VAA E + L+EQ+L+DC++ +GC G + + YI N
Sbjct: 115 WAFSGVAATESAYLAYRDQSLDLAEQELVDCAS--QHGCHGDTIPRGIEYIQHN 166
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 228 HAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGY 260
HAV IVG+ + G +YW+++NSW WGD GY
Sbjct: 250 HAVNIVGYSNAQ-GVDYWIVRNSWDTNWGDNGY 281
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 135 DVPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTN 194
+ P +D R VTPI+ Q CG CWAF+ VAA E + L+EQ+L+DC++
Sbjct: 9 NAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDCAS- 67
Query: 195 GNNGCLGGSREKAFAYIIQN 214
+GC G + + YI N
Sbjct: 68 -QHGCHGDTIPRGIEYIQHN 86
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 228 HAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGY 260
HAV IVG+ + G +YW+++NSW WGD GY
Sbjct: 170 HAVNIVGYSNAQ-GVDYWIVRNSWDTNWGDNGY 201
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 135 DVPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTN 194
+ P +D R VTPI+ Q CG CWAF+ VAA E + L+EQ+L+DC++
Sbjct: 9 NAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRQQSLDLAEQELVDCAS- 67
Query: 195 GNNGCLGGSREKAFAYIIQN 214
+GC G + + YI N
Sbjct: 68 -QHGCHGDTIPRGIEYIQHN 86
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 228 HAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGY 260
HAV IVG+ + G +YW+++NSW WGD GY
Sbjct: 170 HAVNIVGYSNAQ-GVDYWIVRNSWDTNWGDNGY 201
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 6/76 (7%)
Query: 202 GSREKAFA----YIIQNQGIFNGVCGTQLD-HAVTIVGFGTTEDGANYWLIKNSWGNTWG 256
G E AF+ +++ G++ V G + HA+ I+G+G E+G YWL+ NSW WG
Sbjct: 231 GPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWG 289
Query: 257 DAGYMKIVRDEGLCGI 272
D G+ KI+R + CGI
Sbjct: 290 DNGFFKILRGQDHCGI 305
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 17/152 (11%)
Query: 76 EYIEKANKEGNRTYKLGTNQFSDLTNDEFRALYTGYKMPSPSHRXXXXXXFKYQNLSMTD 135
E + NK N T++ G N ++ + R T P P R K
Sbjct: 13 ELVNYVNKR-NTTWQAGHNFYNVDMSYLKRLCGTFLGGPKPPQRVMFTEDLK-------- 63
Query: 136 VPTSLDWRDKGAVTP----IKNQKECGCCWAFAAVAAVEGITKIRSGNLIQL---SEQQL 188
+P S D R++ P I++Q CG CWAF AV A+ I + + + +E L
Sbjct: 64 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 123
Query: 189 LDCSTNGNNGCLGGSREKAFAYIIQNQGIFNG 220
C + +GC GG +A+ + + +G+ +G
Sbjct: 124 TCCGSMCGDGCNGGYPAEAWNFWTR-KGLVSG 154
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 6/76 (7%)
Query: 202 GSREKAFA----YIIQNQGIFNGVCGTQLD-HAVTIVGFGTTEDGANYWLIKNSWGNTWG 256
G E AF+ +++ G++ V G + HA+ I+G+G E+G YWL+ NSW WG
Sbjct: 170 GPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWG 228
Query: 257 DAGYMKIVRDEGLCGI 272
D G+ KI+R + CGI
Sbjct: 229 DNGFFKILRGQDHCGI 244
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 136 VPTSLDWRDKGAVTP----IKNQKECGCCWAFAAVAAVEGITKIRSGNLIQL---SEQQL 188
+P S D R++ P I++Q CG CWAF AV A+ I + + + +E L
Sbjct: 3 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 62
Query: 189 LDCSTNGNNGCLGGSREKAFAYIIQNQGIFNG 220
C + +GC GG +A+ + + +G+ +G
Sbjct: 63 TCCGSMCGDGCNGGYPAEAWNFWTR-KGLVSG 93
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 6/76 (7%)
Query: 202 GSREKAFA----YIIQNQGIFNGVCGTQLD-HAVTIVGFGTTEDGANYWLIKNSWGNTWG 256
G E AF+ +++ G++ V G + HA+ I+G+G E+G YWL+ NSW WG
Sbjct: 174 GPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWG 232
Query: 257 DAGYMKIVRDEGLCGI 272
D G+ KI+R + CGI
Sbjct: 233 DNGFFKILRGQDHCGI 248
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 136 VPTSLDWRDKGAVTP----IKNQKECGCCWAFAAVAAVEGITKIRSGNLIQL---SEQQL 188
+P S D R++ P I++Q CG WAF AV A+ I + + + +E L
Sbjct: 7 LPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 66
Query: 189 LDCSTNGNNGCLGGSREKAFAYIIQNQGIFNG 220
C + +GC GG +A+ + + +G+ +G
Sbjct: 67 TCCGSMCGDGCNGGYPAEAWNFWTR-KGLVSG 97
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 6/76 (7%)
Query: 202 GSREKAFA----YIIQNQGIFNGVCGTQLD-HAVTIVGFGTTEDGANYWLIKNSWGNTWG 256
G E AF+ +++ G++ V G + HA+ I+G+G E+G YWL+ NSW WG
Sbjct: 169 GPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWG 227
Query: 257 DAGYMKIVRDEGLCGI 272
D G+ KI+R + CGI
Sbjct: 228 DNGFFKILRGQDHCGI 243
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 136 VPTSLDWRDKGAVTP----IKNQKECGCCWAFAAVAAVEGITKIRSGNLIQL---SEQQL 188
+P S D R++ P I++Q CG CWAF AV A+ I + + + +E L
Sbjct: 2 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 61
Query: 189 LDCSTNGNNGCLGGSREKAFAYIIQNQGIFNG 220
C + +GC GG +A+ + + +G+ +G
Sbjct: 62 TCCGSMCGDGCNGGYPAEAWNFWTR-KGLVSG 92
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 6/76 (7%)
Query: 202 GSREKAFA----YIIQNQGIFNGVCGTQLD-HAVTIVGFGTTEDGANYWLIKNSWGNTWG 256
G E AF+ +++ G++ V G + HA+ I+G+G E+G YWL+ NSW WG
Sbjct: 168 GPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWG 226
Query: 257 DAGYMKIVRDEGLCGI 272
D G+ KI+R + CGI
Sbjct: 227 DNGFFKILRGQDHCGI 242
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 136 VPTSLDWRDKGAVTP----IKNQKECGCCWAFAAVAAVEGITKIRSGNLIQL---SEQQL 188
+P S D R++ P I++Q CG CWAF AV A+ I + + + +E L
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 60
Query: 189 LDCSTNGNNGCLGGSREKAFAYIIQNQGIFNG 220
C + +GC GG +A+ + + +G+ +G
Sbjct: 61 TCCGSMCGDGCNGGYPAEAWNFWTR-KGLVSG 91
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 6/76 (7%)
Query: 202 GSREKAFA----YIIQNQGIFNGVCGTQLD-HAVTIVGFGTTEDGANYWLIKNSWGNTWG 256
G E AF+ +++ G++ V G + HA+ I+G+G E+G YWL+ NSW WG
Sbjct: 119 GPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWG 177
Query: 257 DAGYMKIVRDEGLCGI 272
D G+ KI+R + CGI
Sbjct: 178 DNGFFKILRGQDHCGI 193
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 6/76 (7%)
Query: 202 GSREKAFA----YIIQNQGIFNGVCGTQLD-HAVTIVGFGTTEDGANYWLIKNSWGNTWG 256
G E AF+ +++ G++ V G + HA+ I+G+G E+G YWL+ NSW WG
Sbjct: 168 GPVEGAFSVYSDFLLYKSGVYQHVSGEIMGGHAIRILGWGV-ENGTPYWLVANSWNTDWG 226
Query: 257 DAGYMKIVRDEGLCGI 272
D G+ KI+R + CGI
Sbjct: 227 DNGFFKILRGQDHCGI 242
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 136 VPTSLDWRDKGAVTP----IKNQKECGCCWAFAAVAAVEGITKIRSGNL--IQLSEQQLL 189
+P S D R++ P I++Q CG CWAF AV A+ I S +++S + +L
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 6/76 (7%)
Query: 202 GSREKAFA----YIIQNQGIFNGVCGTQLD-HAVTIVGFGTTEDGANYWLIKNSWGNTWG 256
G E AF+ +++ G++ V G + HA+ I+G+G E+G YWL+ NSW WG
Sbjct: 168 GPVEGAFSVYSDFLLYKSGVYQHVSGEIMGGHAIRILGWGV-ENGTPYWLVGNSWNTDWG 226
Query: 257 DAGYMKIVRDEGLCGI 272
D G+ KI+R + CGI
Sbjct: 227 DNGFFKILRGQDHCGI 242
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 136 VPTSLDWRDKGAVTP----IKNQKECGCCWAFAAVAAVEGITKIRSGNL--IQLSEQQLL 189
+P S D R++ P I++Q CG CWAF AV A+ I S +++S + +L
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 6/76 (7%)
Query: 202 GSREKAFA----YIIQNQGIFNGVCGTQLD-HAVTIVGFGTTEDGANYWLIKNSWGNTWG 256
G E AF+ +++ G++ V G + HA+ I+G+G E+G YWL+ NSW WG
Sbjct: 120 GPVEGAFSVYSDFLLYKSGVYQHVSGEIMGGHAIRILGWGV-ENGTPYWLVGNSWNTDWG 178
Query: 257 DAGYMKIVRDEGLCGI 272
D G+ KI+R + CGI
Sbjct: 179 DNGFFKILRGQDHCGI 194
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 135 DVPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTN 194
+ P +D R VTPI+ Q CG WAF+ VAA E + L+EQ+L+DC++
Sbjct: 9 NAPAEIDLRQMRTVTPIRMQGGCGSXWAFSGVAATESAYLAYRQQSLDLAEQELVDCAS- 67
Query: 195 GNNGCLGGSREKAFAYIIQN 214
+GC G + + YI N
Sbjct: 68 -QHGCHGDTIPRGIEYIQHN 86
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 228 HAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGY 260
HAV IVG+ + G +YW+++NSW WGD GY
Sbjct: 170 HAVNIVGYSNAQ-GVDYWIVRNSWDTNWGDNGY 201
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 5/122 (4%)
Query: 156 ECGCCWAFAAVAAVEGITKIRSGNLIQLS--EQQLLDCSTNGNNGCLGGSREKAFAYIIQ 213
+CG C F A+ T R G+ LS E+ + + NG C + E+ Y
Sbjct: 143 QCGTCNEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGG 202
Query: 214 NQGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRDEGLCGIG 273
+ T ++H V++ G+G + DG YW+++NSWG WG+ G+++IV G G
Sbjct: 203 IYAEYQDT--TYINHVVSVAGWGIS-DGTEYWIVRNSWGEPWGERGWLRIVTSTYKDGKG 259
Query: 274 TR 275
R
Sbjct: 260 AR 261
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 12/104 (11%)
Query: 128 YQNLSMTDVPTSLDWRDKGAV---TPIKNQ---KECGCCWAFAAVAAVEGITKI-RSGNL 180
++ LS D+P S DWR+ V + +NQ + CG CWA A+ +A+ I R G
Sbjct: 28 HEYLSPADLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAW 87
Query: 181 IQ--LSEQQLLDCSTNGNNGCLGGSREKAFAYIIQNQGIFNGVC 222
LS Q ++DC G+ C GG+ + Y Q GI + C
Sbjct: 88 PSTLLSVQNVIDCGNAGS--CEGGNDLSVWDYAHQ-HGIPDETC 128
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 226 LDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRDEGLCGIGTRSS 277
+DHAV +VG+G D +W IKNSWG WG+ GY + R G CG+ T +S
Sbjct: 159 IDHAVLLVGYGQRSD-VPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMAS 209
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNG 195
P DWR KGAVT +K+Q CG CWAF+ VEG + G L+ LSEQ+LLDC
Sbjct: 1 APPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKM- 59
Query: 196 NNGCLGGSREKAFAYI 211
+ C+GG A++ I
Sbjct: 60 DKACMGGLPSNAYSAI 75
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 62/128 (48%), Gaps = 7/128 (5%)
Query: 156 ECGCCWAFAAVAAVEGITKIRSGNLIQLS--EQQLLDCSTNGNNGCLGGSREKAFAYIIQ 213
+CG C F A+ T R G+ LS E+ + + NG C + E+ Y
Sbjct: 108 QCGTCNEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGG 167
Query: 214 NQGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRDEGLCGIG 273
+ T ++H V++ G+G + DG YW+++NSWG WG+ G+++IV G G
Sbjct: 168 IYAEYQDT--TYINHVVSVAGWGIS-DGTEYWIVRNSWGEPWGERGWLRIVTSTYKDGKG 224
Query: 274 TRSSYPLA 281
R Y LA
Sbjct: 225 AR--YNLA 230
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 12/96 (12%)
Query: 136 VPTSLDWRDKGAV---TPIKNQ---KECGCCWAFAAVAAVEGITKI-RSGNLIQ--LSEQ 186
+P S DWR+ V + +NQ + CG CWA A+ +A+ I R G LS Q
Sbjct: 1 LPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQ 60
Query: 187 QLLDCSTNGNNGCLGGSREKAFAYIIQNQGIFNGVC 222
++DC G+ C GG+ + Y Q GI + C
Sbjct: 61 NVIDCGNAGS--CEGGNDLSVWDYAHQ-HGIPDETC 93
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 56.2 bits (134), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 227 DHAVTIVGFGT-TEDGANYWLIKNSWGNTWGDAGYMKIVRDEGLCGI 272
+HAV +VG+GT + G +YW++KNSWG WG+ GY +I R C I
Sbjct: 10 NHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAI 56
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 210 YIIQNQGIFNGVCGTQLD-HAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRDEG 268
+I N G+++ V G L HAV +VG+GT+ +G YW I NSW WG GY I R
Sbjct: 240 FIAYNSGVYHHVSGQYLGGHAVRLVGWGTS-NGVPYWKIANSWNTEWGMDGYFLIRRGSS 298
Query: 269 LCGI--GTRSSYPLA 281
CGI G + PLA
Sbjct: 299 ECGIEDGGSAGIPLA 313
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 136 VPTSLD----WRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSG-NLIQLSEQQLLD 190
+P+S D W + + I +Q CG CWA AA +A+ G + +S LL
Sbjct: 71 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLA 130
Query: 191 CSTNGNNGCLGGSREKAFAYIIQNQGIFNGVC 222
C ++ +GC GG ++A+AY + G+ + C
Sbjct: 131 CCSDCGDGCNGGDPDRAWAY-FSSTGLVSDYC 161
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 210 YIIQNQGIFNGVCGTQLD-HAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRDEG 268
+I N G+++ V G L HAV +VG+GT+ +G YW I NSW WG GY I R
Sbjct: 241 FIAYNSGVYHHVSGQYLGGHAVRLVGWGTS-NGVPYWKIANSWNTEWGMDGYFLIRRGSS 299
Query: 269 LCGI--GTRSSYPLA 281
CGI G + PLA
Sbjct: 300 ECGIEDGGSAGIPLA 314
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 136 VPTSLD----WRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSG-NLIQLSEQQLLD 190
+P+S D W + + I +Q CG CWA AA +A+ G + +S LL
Sbjct: 72 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLA 131
Query: 191 CSTNGNNGCLGGSREKAFAYIIQNQGIFNGVC 222
C ++ +GC GG ++A+AY + G+ + C
Sbjct: 132 CCSDCGDGCNGGDPDRAWAY-FSSTGLVSDYC 162
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 210 YIIQNQGIFNGVCGTQLD-HAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRDEG 268
+I N G+++ V G L HAV +VG+GT+ +G YW I NSW WG GY I R
Sbjct: 263 FIAYNSGVYHHVSGQYLGGHAVRLVGWGTS-NGVPYWKIANSWNTEWGMDGYFLIRRGSS 321
Query: 269 LCGI--GTRSSYPLA 281
CGI G + PLA
Sbjct: 322 ECGIEDGGSAGIPLA 336
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 136 VPTSLD----WRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSG-NLIQLSEQQLLD 190
+P+S D W + + I +Q CG CWA AA +A+ G + +S LL
Sbjct: 94 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLA 153
Query: 191 CSTNGNNGCLGGSREKAFAYIIQNQGIFNGVC 222
C ++ +GC GG ++A+AY + G+ + C
Sbjct: 154 CCSDCGDGCNGGDPDRAWAY-FSSTGLVSDYC 184
>pdb|3F75|P Chain P, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 106
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 50 WMAQHGRSYKDELEKEMRLKIFKENLEYIEKANKEGNRTYKLGTNQFSDLTNDEFRALYT 109
+ A + +SY E EK+ R IFK NL YI N++G +Y L N F DL+ DEFR Y
Sbjct: 28 FQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQGY-SYSLKMNHFGDLSRDEFRRKYL 86
Query: 110 GYK 112
G+K
Sbjct: 87 GFK 89
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 202 GSREKAFA----YIIQNQGIFNGVCGTQLD-HAVTIVGFGTTEDGANYWLIKNSWGNTWG 256
G E AF ++ G++ G + HA+ I+G+G E+G YWL+ NSW WG
Sbjct: 230 GPVEGAFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGI-ENGVPYWLVANSWNADWG 288
Query: 257 DAGYMKIVRDEGLCGI 272
D G+ KI+R E CGI
Sbjct: 289 DNGFFKILRGENHCGI 304
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Query: 135 DVPTSLDWRDKGAVTP----IKNQKECGCCWAFAAVAAVEGITKIRSGNLIQL---SEQQ 187
++P S D R++ + P I++Q CG WAF AV A+ I + + + +E
Sbjct: 62 NLPESFDAREQWSNCPTIAQIRDQGSCGSSWAFGAVEAMSDRICIHTNGRVNVEVSAEDL 121
Query: 188 LLDCSTNGNNGCLGGSREKAFAYIIQNQGIFNGVCGTQL 226
L C +GC GG A+ + + + GV + +
Sbjct: 122 LTCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHI 160
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 202 GSREKAFA----YIIQNQGIFNGVCGTQLD-HAVTIVGFGTTEDGANYWLIKNSWGNTWG 256
G E AF ++ G++ G + HA+ I+G+G E+G YWL+ NSW WG
Sbjct: 174 GPVEGAFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGI-ENGVPYWLVANSWNADWG 232
Query: 257 DAGYMKIVRDEGLCGI 272
D G+ KI+R E CGI
Sbjct: 233 DNGFFKILRGENHCGI 248
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 135 DVPTSLDWRDKGAVTP----IKNQKECGCCWAFAAVAAVEGITKIRSGNLIQL---SEQQ 187
++P S D R++ + P I++Q CG CWAF AV A+ I + + + +E
Sbjct: 6 NLPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDL 65
Query: 188 LLDCSTNGNNGCLGGSREKAFAYIIQNQGIFNGV 221
L C +GC GG A+ + + + GV
Sbjct: 66 LTCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGV 99
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 202 GSREKAFA----YIIQNQGIFNGVCGTQLD-HAVTIVGFGTTEDGANYWLIKNSWGNTWG 256
G E AF ++ G++ G + HA+ I+G+G E+G YWL+ NSW WG
Sbjct: 168 GPVEGAFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGI-ENGVPYWLVANSWNADWG 226
Query: 257 DAGYMKIVRDEGLCGI 272
D G+ KI+R E CGI
Sbjct: 227 DNGFFKILRGENHCGI 242
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 136 VPTSLDWRDKGAVTP----IKNQKECGCCWAFAAVAAVEGITKIRSGNLIQL---SEQQL 188
+P S D R++ + P I++Q CG CWAF AV A+ I + + + +E L
Sbjct: 1 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 60
Query: 189 LDCSTNGNNGCLGGSREKAFAYIIQNQGIFNGV 221
C +GC GG A+ + + + GV
Sbjct: 61 TCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGV 93
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 227 DHAVTIVGFGT-TEDGANYWLIKNSWGNTWGDAGYMKIVRDEGLCGI 272
+HAV +VG+GT + G +YW++KNSWG WG+ GY +I R C I
Sbjct: 380 NHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAI 426
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 16/97 (16%)
Query: 136 VPTSLDWRDKGA---VTPIKNQKECGCCWAFAAVAAVEGITKIRSGN--LIQLSEQQLLD 190
+PTS DWR+ V+P++NQ CG C++FA++ +E +I + N LS Q+++
Sbjct: 207 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVS 266
Query: 191 CSTNGNNGCLGGSREKAFAYII-----QNQGIFNGVC 222
CS GC GG F Y+I Q+ G+ C
Sbjct: 267 CSQYA-QGCEGG-----FPYLIAGKYAQDFGLVEEAC 297
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 216 GIFNGVCGTQLD-HAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRDEGLCGI 272
GI+ + G L HA+ I+G+G E+ A YWLI NSW WG+ GY +IVR C I
Sbjct: 188 GIYKHITGETLGGHAIRIIGWGV-ENKAPYWLIANSWNEDWGENGYFRIVRGRDECSI 244
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 9/102 (8%)
Query: 134 TDVPTSLDWRDK----GAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNL--IQLSEQQ 187
++P+S D R K ++ I++Q CG CWAF AV A+ + I+SG ++LS
Sbjct: 1 VEIPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVD 60
Query: 188 LLDCSTNGNNGCLGGSREKAFAYIIQNQGIFNGVCGTQLDHA 229
LL C + GC GG A+ Y ++ +GI G ++ +HA
Sbjct: 61 LLSCCESCGLGCEGGILGPAWDYWVK-EGIVTG--SSKENHA 99
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 227 DHAVTIVGFGTTE-DGANYWLIKNSWGNTWGDAGYMKIVRDEGLCGI 272
+HAV +VG+G G +YW++KNSWG+ WG++GY +I R C I
Sbjct: 379 NHAVLLVGYGKDPVTGLDYWIVKNSWGSQWGESGYFRIRRGTDECAI 425
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 11/85 (12%)
Query: 133 MTDVPTSLDWRD-KGA--VTPIKNQKECGCCWAFAAVAAVEGITKIRSGN--LIQLSEQQ 187
+ +P S DWR+ +G V+P++NQ+ CG C++FA++ +E +I + N LS Q+
Sbjct: 203 ILSLPESWDWRNVRGINFVSPVRNQESCGSCYSFASLGMLEARIRILTNNSQTPILSPQE 262
Query: 188 LLDCSTNGNNGCLGGSREKAFAYII 212
++ CS GC GG F Y+I
Sbjct: 263 VVSCSPYA-QGCDGG-----FPYLI 281
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJG|B Chain B, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
pdb|2DJF|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
Length = 164
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 11/85 (12%)
Query: 136 VPTSLDWRDKGA---VTPIKNQKECGCCWAFAAVAAVEGITKIRSGN--LIQLSEQQLLD 190
+PTS DWR+ V+P++NQ CG C++FA++ +E +I + N LS Q+++
Sbjct: 1 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVS 60
Query: 191 CSTNGNNGCLGGSREKAFAYIIQNQ 215
CS GC GG F Y+I +
Sbjct: 61 CSQYA-QGCEGG-----FPYLIAGK 79
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 5/48 (10%)
Query: 221 VCGTQL-DHAVTIVGFG----TTEDGANYWLIKNSWGNTWGDAGYMKI 263
+CG DHAV IVG+G + + +YW+++NSWG WGD GY K+
Sbjct: 192 LCGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKV 239
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 5/48 (10%)
Query: 221 VCGTQ-LDHAVTIVGFG----TTEDGANYWLIKNSWGNTWGDAGYMKI 263
+CG DHAV IVG+G + + +YW+++NSWG WGD GY K+
Sbjct: 191 LCGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKV 238
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|D Chain D, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1MHW|C Chain C, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|D Chain D, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 42
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 244 YWLIKNSWGNTWGDAGYMKIVRD-EGLCGIGTRSSYP 279
YWL+KNSWG WG GY+K+ +D CGI + +SYP
Sbjct: 4 YWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYP 40
>pdb|2L95|A Chain A, Solution Structure Of Cytotoxic T-Lymphocyte
Antigent-2(Ctla Protein), Crammer At Ph 6.0
Length = 80
Score = 40.0 bits (92), Expect = 0.001, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 8/73 (10%)
Query: 48 EKWM---AQHGRSYKDELEKEMRLKIFKENLEYIEKANKE---GNRTYKLGTNQFSDLTN 101
E+W+ ++ ++Y+ E E MR +I+ E+ IE+ N++ G T+K+G N +DLT
Sbjct: 8 EEWVEYKSKFDKNYEAE-EDLMRRRIYAESKARIEEHNRKFEKGEVTWKMGINHLADLTP 66
Query: 102 DEFRALYTGYKMP 114
+EF A +G K+P
Sbjct: 67 EEF-AQRSGKKVP 78
>pdb|1HUC|A Chain A, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|C Chain C, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|A Chain A, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|D Chain D, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|A Chain A, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 47
Score = 36.2 bits (82), Expect = 0.021, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 136 VPTSLDWRDKGAVTP----IKNQKECGCCWAFAAVAAV 169
+P S D R++ P I++Q CG CWAF AV A+
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAI 38
>pdb|1SP4|A Chain A, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 48
Score = 35.4 bits (80), Expect = 0.039, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 136 VPTSLDWRDKGAVTP----IKNQKECGCCWAFAAVAAV 169
+P S D R++ P I++Q CG CWAF AV A+
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAI 38
>pdb|3OIS|A Chain A, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|B Chain B, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|C Chain C, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|D Chain D, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
Length = 291
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 228 HAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYM 261
HAV VG+ +D ++ I+NSWGN G+ GY
Sbjct: 237 HAVLCVGY---DDEIRHFRIRNSWGNNVGEDGYF 267
>pdb|2DZZ|A Chain A, Crystal Structure Of N392v Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 149 TPIKNQKECGCCWAFAA 165
TP+ NQK G CW FAA
Sbjct: 66 TPVTNQKSSGRCWLFAA 82
>pdb|1GCB|A Chain A, Gal6, Yeast Bleomycin Hydrolase Dna-Binding Protease
(Thiol)
Length = 454
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 149 TPIKNQKECGCCWAFAA 165
TP+ NQK G CW FAA
Sbjct: 62 TPVTNQKSSGRCWLFAA 78
>pdb|2E02|A Chain A, Crystal Structure Of H369l Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 149 TPIKNQKECGCCWAFAA 165
TP+ NQK G CW FAA
Sbjct: 66 TPVTNQKSSGRCWLFAA 82
>pdb|2E00|A Chain A, Crystal Structure Of N392l Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 149 TPIKNQKECGCCWAFAA 165
TP+ NQK G CW FAA
Sbjct: 66 TPVTNQKSSGRCWLFAA 82
>pdb|2DZY|A Chain A, Crystal Structure Of N392a Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 149 TPIKNQKECGCCWAFAA 165
TP+ NQK G CW FAA
Sbjct: 66 TPVTNQKSSGRCWLFAA 82
>pdb|2E01|A Chain A, Crystal Structure Of H369a Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 149 TPIKNQKECGCCWAFAA 165
TP+ NQK G CW FAA
Sbjct: 66 TPVTNQKSSGRCWLFAA 82
>pdb|3PW3|A Chain A, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|B Chain B, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|C Chain C, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|D Chain D, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|E Chain E, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|F Chain F, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
Length = 383
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 224 TQLDHAVTIVGFGTTEDGANYWLIKNSWG 252
T DH I G ++G Y+ +KNSWG
Sbjct: 314 TTDDHGXQIYGIAKDQEGNEYYXVKNSWG 342
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 148 VTPIKNQKECGCCWAFAAVAAVE 170
+T +KNQ G CW +++ + +E
Sbjct: 22 ITSVKNQNRAGTCWCYSSYSFLE 44
>pdb|2E03|A Chain A, Crystal Structure Of Nq67e Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 149 TPIKNQKECGCCWAFAA 165
TP+ N+K G CW FAA
Sbjct: 66 TPVTNEKSSGRCWLFAA 82
>pdb|2CB5|A Chain A, Human Bleomycin Hydrolase, C73s/dele455 Mutant
pdb|2CB5|B Chain B, Human Bleomycin Hydrolase, C73s/dele455 Mutant
Length = 453
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 226 LDHAVTIVGFGTTED--GA-NYWLIKNSWGNTWGDAGYM 261
+ HA+T +D GA W ++NSWG G GY+
Sbjct: 369 MTHAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYL 407
>pdb|1CB5|A Chain A, Human Bleomycin Hydrolase.
pdb|1CB5|B Chain B, Human Bleomycin Hydrolase.
pdb|1CB5|C Chain C, Human Bleomycin Hydrolase
Length = 453
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 226 LDHAVTIVGFGTT--EDGA-NYWLIKNSWGNTWGDAGYM 261
+ HA+T +DGA W ++NSWG G GY+
Sbjct: 369 MTHAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYL 407
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,250,733
Number of Sequences: 62578
Number of extensions: 339138
Number of successful extensions: 1393
Number of sequences better than 100.0: 126
Number of HSP's better than 100.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 953
Number of HSP's gapped (non-prelim): 277
length of query: 281
length of database: 14,973,337
effective HSP length: 98
effective length of query: 183
effective length of database: 8,840,693
effective search space: 1617846819
effective search space used: 1617846819
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)