Query 023510
Match_columns 281
No_of_seqs 127 out of 1328
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 04:34:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023510.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023510hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 2.9E-84 6.3E-89 601.3 20.4 252 2-261 68-324 (324)
2 cd00693 secretory_peroxidase H 100.0 7.5E-81 1.6E-85 576.8 21.6 254 2-260 45-298 (298)
3 PLN02608 L-ascorbate peroxidas 100.0 2.1E-59 4.6E-64 429.5 19.3 204 3-259 51-258 (289)
4 PF00141 peroxidase: Peroxidas 100.0 9.1E-60 2E-64 422.5 10.2 202 2-225 28-230 (230)
5 PLN02879 L-ascorbate peroxidas 100.0 3.5E-55 7.6E-60 395.5 16.6 190 4-246 55-248 (251)
6 PLN02364 L-ascorbate peroxidas 100.0 6.9E-55 1.5E-59 394.1 17.1 191 2-245 50-247 (250)
7 cd00691 ascorbate_peroxidase A 100.0 1.5E-54 3.2E-59 393.1 17.3 198 5-246 43-251 (253)
8 cd00692 ligninase Ligninase an 100.0 8.1E-54 1.8E-58 399.0 19.7 207 4-265 64-291 (328)
9 cd00649 catalase_peroxidase_1 100.0 7.1E-52 1.5E-56 392.0 17.9 228 4-251 91-401 (409)
10 cd00314 plant_peroxidase_like 100.0 2.1E-49 4.5E-54 360.2 16.5 194 4-242 40-255 (255)
11 TIGR00198 cat_per_HPI catalase 100.0 5.1E-49 1.1E-53 393.7 18.5 228 4-251 101-408 (716)
12 PRK15061 catalase/hydroperoxid 100.0 1.3E-46 2.7E-51 374.7 18.1 228 4-251 103-414 (726)
13 cd08201 plant_peroxidase_like_ 100.0 1.6E-41 3.5E-46 306.5 13.0 192 3-242 62-264 (264)
14 cd08200 catalase_peroxidase_2 100.0 1.6E-35 3.5E-40 270.7 14.9 194 4-244 51-296 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 1.1E-30 2.3E-35 262.2 14.7 191 4-245 469-710 (716)
16 PRK15061 catalase/hydroperoxid 100.0 1.7E-30 3.7E-35 259.5 15.7 195 4-245 476-722 (726)
17 COG0376 KatG Catalase (peroxid 100.0 6.5E-30 1.4E-34 245.3 15.9 213 17-243 124-415 (730)
18 COG0376 KatG Catalase (peroxid 99.5 3.4E-13 7.4E-18 130.8 10.7 191 4-244 486-725 (730)
19 PTZ00411 transaldolase-like pr 79.4 22 0.00049 33.9 10.6 59 69-127 180-250 (333)
20 PF11895 DUF3415: Domain of un 71.1 4.1 8.9E-05 30.8 2.6 31 229-263 3-33 (80)
21 PRK05269 transaldolase B; Prov 69.4 45 0.00097 31.6 9.9 49 69-117 170-221 (318)
22 PRK12309 transaldolase/EF-hand 68.6 74 0.0016 31.1 11.4 65 52-117 155-225 (391)
23 TIGR00874 talAB transaldolase. 67.2 69 0.0015 30.4 10.6 50 68-117 167-219 (317)
24 PRK12346 transaldolase A; Prov 56.6 11 0.00025 35.6 3.3 75 52-127 150-239 (316)
25 cd00957 Transaldolase_TalAB Tr 43.5 18 0.00038 34.3 2.4 65 52-117 149-219 (313)
26 cd00439 Transaldolase Transald 38.3 30 0.00066 31.6 3.0 66 52-117 140-210 (252)
27 TIGR00875 fsa_talC_mipB fructo 26.8 39 0.00084 30.1 1.7 39 69-117 121-159 (213)
28 PRK01362 putative translaldola 23.3 72 0.0016 28.4 2.7 39 69-117 121-159 (214)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=2.9e-84 Score=601.33 Aligned_cols=252 Identities=44% Similarity=0.775 Sum_probs=237.6
Q ss_pred CCCcccceeeccCCCCCccccccCCCCCchhhHHHHHHHHHHHHhhCCCcccHHHHHHHhhhhhhhhcCCCceeecCCCC
Q 023510 2 LFQGCDASILLDNTTTIVSEKFAAPNNNSARGFEVVDDMKAAVERACPGVVSCADILTIAAEQSVALSGGPSWTNLLGRR 81 (281)
Q Consensus 2 fv~GcDaSill~~~~~~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VS~ADilalAa~~av~~~GGP~~~v~~GR~ 81 (281)
||+||||||||+++ ..||++++|. +++||++|+.||+.+|++||++|||||||+||||+||+++|||.|+|++||+
T Consensus 68 fv~GCDaSvLl~~~---~~Ek~a~~N~-~l~Gf~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRr 143 (324)
T PLN03030 68 FVRGCDASILIDGS---NTEKTALPNL-LLRGYDVIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRR 143 (324)
T ss_pred eecCCceEEeeCCC---cccccCCCCc-CcchHHHHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeecccc
Confidence 89999999999964 3799999998 7899999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccccCCCCCCCCCHHHHHHHHHHcCCCCchhhhhhhcccccccccccccccccccCCCCC-CCCCCCCHHHHH
Q 023510 82 DSRTANRTLANENLPGPNNSLERLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTFSDRLFNFNSTG-NPDPTLNTTLLQ 160 (281)
Q Consensus 82 D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~~e~VaLsGaHtiG~~hc~~f~~Rl~~f~g~~-~~dp~~d~~~~~ 160 (281)
|+.+|...++. +||.|+.+++++++.|+++||+.+ |||+||||||||++||.+|.+|||||.|++ .+||+||+.|+.
T Consensus 144 Dg~~s~~~~~~-~LP~p~~~~~~l~~~F~~~Gl~~~-DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~ 221 (324)
T PLN03030 144 DGRVSLASDAS-NLPGFTDSIDVQKQKFAAKGLNTQ-DLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVP 221 (324)
T ss_pred CCCCCCccccc-CCcCCCCCHHHHHHHHHHcCCCHH-HheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHH
Confidence 99998777664 899999999999999999999999 999999999999999999999999998864 479999999999
Q ss_pred HHHhhCCCCCCCCcccccCCCCCcccChHHHHHHhhccCcccccccccCCChhhHHHHHHHHhhCH----HHHHHHHHHH
Q 023510 161 QLRQLCPQGGNGSVLTNLDVTTPDVFDNKYFFNLQIHKGLLQSDQELFSTPGADTAAIVNNFGRNQ----TAFFENFVTS 236 (281)
Q Consensus 161 ~L~~~Cp~~~~~~~~~~ld~~tp~~FDN~Yy~~l~~~~glL~SD~~L~~d~~~~t~~~V~~yA~~~----~~F~~dFa~A 236 (281)
.|++.||..++..+.+++|+.||.+|||+||++|++++|+|+|||+|+.|+ +|+++|+.||.|+ +.|+++|++|
T Consensus 222 ~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~nll~~rGlL~SDq~L~~d~--~T~~~V~~~A~~~~~~~~~F~~~Fa~A 299 (324)
T PLN03030 222 QLQALCPQNGDGSRRIALDTGSSNRFDASFFSNLKNGRGILESDQKLWTDA--STRTFVQRFLGVRGLAGLNFNVEFGRS 299 (324)
T ss_pred HHhccCCCCCCCCccccCCCCCCcccccHHHHHHHhcCCCcCCchHhhcCc--cHHHHHHHHhcccccchhhhHHHHHHH
Confidence 999999964333346789999999999999999999999999999999999 9999999999874 5999999999
Q ss_pred HHHhhcCCCCCCCCCcccccccccc
Q 023510 237 MIRMGNLKPLTGNQGEIRLNCRRVN 261 (281)
Q Consensus 237 m~Km~~lgv~tg~~GeiR~~C~~~n 261 (281)
|+||++|+|+||.+|||||+|+++|
T Consensus 300 mvKMg~i~VlTG~~GEIRk~C~~vN 324 (324)
T PLN03030 300 MVKMSNIGVKTGTNGEIRKVCSAIN 324 (324)
T ss_pred HHHHccCCCCCCCCCceeccccccC
Confidence 9999999999999999999999998
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=7.5e-81 Score=576.82 Aligned_cols=254 Identities=56% Similarity=0.926 Sum_probs=242.9
Q ss_pred CCCcccceeeccCCCCCccccccCCCCCchhhHHHHHHHHHHHHhhCCCcccHHHHHHHhhhhhhhhcCCCceeecCCCC
Q 023510 2 LFQGCDASILLDNTTTIVSEKFAAPNNNSARGFEVVDDMKAAVERACPGVVSCADILTIAAEQSVALSGGPSWTNLLGRR 81 (281)
Q Consensus 2 fv~GcDaSill~~~~~~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VS~ADilalAa~~av~~~GGP~~~v~~GR~ 81 (281)
||+||||||||+++.+..+|+++++|. +++||++|+.||+.+|+.||++|||||||+||||+||+++|||.|+|++||+
T Consensus 45 ~v~GcDaSill~~~~~~~~E~~~~~N~-~l~g~~~i~~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~ 123 (298)
T cd00693 45 FVRGCDASVLLDSTANNTSEKDAPPNL-SLRGFDVIDDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRR 123 (298)
T ss_pred hccCcceeEEecCCCCCchhccCCCCC-CcchhHHHHHHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCc
Confidence 799999999999876678999999999 6799999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccccCCCCCCCCCHHHHHHHHHHcCCCCchhhhhhhcccccccccccccccccccCCCCCCCCCCCCHHHHHH
Q 023510 82 DSRTANRTLANENLPGPNNSLERLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTFSDRLFNFNSTGNPDPTLNTTLLQQ 161 (281)
Q Consensus 82 D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~~e~VaLsGaHtiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~ 161 (281)
|+..+....+ .+||.|..+++++++.|+++||+.+ |||+|+||||||++||.+|.+|+|||+|++.+||+|++.|+..
T Consensus 124 D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~G~~~~-d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~ 201 (298)
T cd00693 124 DGRVSSANDV-GNLPSPFFSVSQLISLFASKGLTVT-DLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQ 201 (298)
T ss_pred CCcccCcccc-cCCCCcccCHHHHHHHHHHcCCCHH-HheeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHH
Confidence 9998876655 6899999999999999999999999 9999999999999999999999999999888999999999999
Q ss_pred HHhhCCCCCCCCcccccCCCCCcccChHHHHHHhhccCcccccccccCCChhhHHHHHHHHhhCHHHHHHHHHHHHHHhh
Q 023510 162 LRQLCPQGGNGSVLTNLDVTTPDVFDNKYFFNLQIHKGLLQSDQELFSTPGADTAAIVNNFGRNQTAFFENFVTSMIRMG 241 (281)
Q Consensus 162 L~~~Cp~~~~~~~~~~ld~~tp~~FDN~Yy~~l~~~~glL~SD~~L~~d~~~~t~~~V~~yA~~~~~F~~dFa~Am~Km~ 241 (281)
|++.||...++...+++|+.||..|||+||++|+.++|+|+||++|+.|+ +|+++|+.||.|++.|+++|++||+||+
T Consensus 202 L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~~l~~~~glL~SD~~L~~d~--~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~ 279 (298)
T cd00693 202 LRKKCPAGGDDDTLVPLDPGTPNTFDNSYYKNLLAGRGLLTSDQALLSDP--RTRAIVNRYAANQDAFFRDFAAAMVKMG 279 (298)
T ss_pred hcCCCCCCCCCCccccCCCCCCCccccHHHHHHHhcccCccCCHHhccCc--cHHHHHHHHhhCHHHHHHHHHHHHHHHh
Confidence 99999976555667899999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred cCCCCCCCCCccccccccc
Q 023510 242 NLKPLTGNQGEIRLNCRRV 260 (281)
Q Consensus 242 ~lgv~tg~~GeiR~~C~~~ 260 (281)
+++|+||.+||||++|+++
T Consensus 280 ~l~v~tg~~GeiR~~C~~~ 298 (298)
T cd00693 280 NIGVLTGSQGEIRKNCRVV 298 (298)
T ss_pred hcCCccCCCCccCCccccC
Confidence 9999999999999999975
No 3
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=2.1e-59 Score=429.50 Aligned_cols=204 Identities=29% Similarity=0.491 Sum_probs=185.9
Q ss_pred CCcccceeeccCCCCCccccccCCCCCchhhHHHHHHHHHHHHhhCCCcccHHHHHHHhhhhhhhhcCCCceeecCCCCC
Q 023510 3 FQGCDASILLDNTTTIVSEKFAAPNNNSARGFEVVDDMKAAVERACPGVVSCADILTIAAEQSVALSGGPSWTNLLGRRD 82 (281)
Q Consensus 3 v~GcDaSill~~~~~~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VS~ADilalAa~~av~~~GGP~~~v~~GR~D 82 (281)
++||||||+++ +|+++++|.++.+|+++|+.||+++ | +|||||||+||||+||+.+|||.|+|++||+|
T Consensus 51 ~gGcDgSIll~------~E~~~~~N~gL~~g~~vid~iK~~~----~-~VScADilalAardAV~~~GGP~~~v~~GR~D 119 (289)
T PLN02608 51 TGGPNGSIRNE------EEYSHGANNGLKIAIDLCEPVKAKH----P-KITYADLYQLAGVVAVEVTGGPTIDFVPGRKD 119 (289)
T ss_pred CCCCCeeeecc------cccCCccccchHHHHHHHHHHHHHc----C-CcCHHHHHHHHHHHHHHhcCCCccCCCCCCCC
Confidence 89999999985 6999999995547999999999986 4 89999999999999999999999999999999
Q ss_pred CCccccccccCCCCCCCCCHHHHHHHHHHcCCCCchhhhhhhcccccccccccccccccccCCCCCCCCCCCCHHHHHHH
Q 023510 83 SRTANRTLANENLPGPNNSLERLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTFSDRLFNFNSTGNPDPTLNTTLLQQL 162 (281)
Q Consensus 83 ~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~~e~VaLsGaHtiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L 162 (281)
+.++.+ +.+||.|..+++++++.|+++||+.+ |||+|+||||||++||. |+ +|.|.
T Consensus 120 ~~~s~~---~~~LP~p~~~~~~l~~~F~~~Gl~~~-D~VaLsGAHTiG~ahc~----r~-g~~g~--------------- 175 (289)
T PLN02608 120 SNACPE---EGRLPDAKKGAKHLRDVFYRMGLSDK-DIVALSGGHTLGRAHPE----RS-GFDGP--------------- 175 (289)
T ss_pred CCcCCc---cCCCcCCCCCHHHHHHHHHHcCCCHH-HHhhhcccccccccccc----CC-CCCCC---------------
Confidence 998853 45899999999999999999999999 99999999999999994 65 44321
Q ss_pred HhhCCCCCCCCcccccCCCCCcccChHHHHHHhhc--cCc--ccccccccCCChhhHHHHHHHHhhCHHHHHHHHHHHHH
Q 023510 163 RQLCPQGGNGSVLTNLDVTTPDVFDNKYFFNLQIH--KGL--LQSDQELFSTPGADTAAIVNNFGRNQTAFFENFVTSMI 238 (281)
Q Consensus 163 ~~~Cp~~~~~~~~~~ld~~tp~~FDN~Yy~~l~~~--~gl--L~SD~~L~~d~~~~t~~~V~~yA~~~~~F~~dFa~Am~ 238 (281)
+..||.+|||+||++|+.+ +|+ |+||++|+.|+ +|+.+|+.||.|++.|+++|++||+
T Consensus 176 ----------------~~~Tp~~FDN~Yy~~ll~~~~~gll~L~SD~~L~~d~--~T~~~V~~fA~~~~~F~~~Fa~Am~ 237 (289)
T PLN02608 176 ----------------WTKEPLKFDNSYFVELLKGESEGLLKLPTDKALLEDP--EFRPYVELYAKDEDAFFRDYAESHK 237 (289)
T ss_pred ----------------CCCCCCccChHHHHHHHcCCcCCccccccCHhhhcCh--hHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 1168999999999999998 787 79999999999 9999999999999999999999999
Q ss_pred HhhcCCCCCCCCCcccccccc
Q 023510 239 RMGNLKPLTGNQGEIRLNCRR 259 (281)
Q Consensus 239 Km~~lgv~tg~~GeiR~~C~~ 259 (281)
||++++|+||.+||+.+..+.
T Consensus 238 Km~~lgvltg~~Ge~~~~~~~ 258 (289)
T PLN02608 238 KLSELGFTPPSSAFKKKSTST 258 (289)
T ss_pred HHHcCCCCCCCCCcccccCcc
Confidence 999999999999999986543
No 4
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=9.1e-60 Score=422.51 Aligned_cols=202 Identities=49% Similarity=0.831 Sum_probs=182.2
Q ss_pred CC-CcccceeeccCCCCCccccccCCCCCchhhHHHHHHHHHHHHhhCCCcccHHHHHHHhhhhhhhhcCCCceeecCCC
Q 023510 2 LF-QGCDASILLDNTTTIVSEKFAAPNNNSARGFEVVDDMKAAVERACPGVVSCADILTIAAEQSVALSGGPSWTNLLGR 80 (281)
Q Consensus 2 fv-~GcDaSill~~~~~~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VS~ADilalAa~~av~~~GGP~~~v~~GR 80 (281)
|| +|||||||+. ..|+++++|.++.+++++|+.||++++++||++|||||||+|||++||+.+|||.|+|++||
T Consensus 28 ~~~~GcDgSil~~-----~~e~~~~~N~gl~~~~~~i~~ik~~~~~~cp~~VS~ADiialAa~~av~~~GGP~~~v~~GR 102 (230)
T PF00141_consen 28 FVYGGCDGSILLF-----SAEKDAPPNRGLRDGFDVIDPIKAKLEAACPGVVSCADIIALAARDAVELCGGPRIPVPLGR 102 (230)
T ss_dssp TTHTSSSSGGGGS-----TTGGGSGGGTTHHHHHHHHHHHHHHHCHHSTTTS-HHHHHHHHHHHHHHHTTGGHSHBEB-E
T ss_pred ccccccccceecc-----ccccccccccCcceeeechhhHHhhhcccccCCCCHHHHHHHHhhhcccccccccccccccc
Confidence 68 9999999983 47999999995555999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccCCCCCCCCCHHHHHHHHHHcCCCCchhhhhhhcccccccccccccccccccCCCCCCCCCCCCHHHHH
Q 023510 81 RDSRTANRTLANENLPGPNNSLERLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTFSDRLFNFNSTGNPDPTLNTTLLQ 160 (281)
Q Consensus 81 ~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~~e~VaLsGaHtiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~ 160 (281)
+|+.++...++ .+||.|..+++++++.|+++||+.+ |||||+||||||++||.+|. ||| + .+||+||+.|+.
T Consensus 103 ~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~Gls~~-e~VaLsGaHTiG~~~c~~f~-rl~-~----~~dp~~d~~~~~ 174 (230)
T PF00141_consen 103 RDGTVSSPSGA-SNLPSPTDSVDQLLAFFARKGLSAE-EMVALSGAHTIGRAHCSSFS-RLY-F----PPDPTMDPGYAG 174 (230)
T ss_dssp BB-SSGGHHHH-HHSSTTTSHHHHHHHHHHHTT--HH-HHHHHHGGGGSTEESGGCTG-GTS-C----SSGTTSTHHHHH
T ss_pred ccccccccccc-ccccccccccchhhhhhhccccchh-hhcceecccccccceecccc-ccc-c----ccccccccccce
Confidence 99999998766 6899999999999999999999999 99999999999999999999 999 5 479999999998
Q ss_pred HHHhhCCCCCCCCcccccCCCCCcccChHHHHHHhhccCcccccccccCCChhhHHHHHHHHhhC
Q 023510 161 QLRQLCPQGGNGSVLTNLDVTTPDVFDNKYFFNLQIHKGLLQSDQELFSTPGADTAAIVNNFGRN 225 (281)
Q Consensus 161 ~L~~~Cp~~~~~~~~~~ld~~tp~~FDN~Yy~~l~~~~glL~SD~~L~~d~~~~t~~~V~~yA~~ 225 (281)
. .| ..++++ .+++| ||.+|||+||++|+.++|+|+||++|+.|+ +|+++|++||+|
T Consensus 175 ~---~C-~~~~~~-~~~~d--tp~~fDN~Yy~~ll~~~gll~SD~~L~~d~--~t~~~V~~yA~d 230 (230)
T PF00141_consen 175 Q---NC-NSGGDN-GVPLD--TPTVFDNSYYKNLLNGRGLLPSDQALLNDP--ETRPIVERYAQD 230 (230)
T ss_dssp H---SS-STSGCT-CEESS--STTS-SSHHHHHHHHTEEEEHHHHHHHHST--THHHHHHHHHHT
T ss_pred e---cc-CCCccc-ccccc--CCCcchhHHHHHHhcCCCcCHHHHHHhcCH--HHHHHHHHHhcC
Confidence 8 99 443333 77888 999999999999999999999999999999 999999999976
No 5
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=3.5e-55 Score=395.45 Aligned_cols=190 Identities=31% Similarity=0.521 Sum_probs=173.1
Q ss_pred CcccceeeccCCCCCccccccCCCCCchhhHHHHHHHHHHHHhhCCCcccHHHHHHHhhhhhhhhcCCCceeecCCCCCC
Q 023510 4 QGCDASILLDNTTTIVSEKFAAPNNNSARGFEVVDDMKAAVERACPGVVSCADILTIAAEQSVALSGGPSWTNLLGRRDS 83 (281)
Q Consensus 4 ~GcDaSill~~~~~~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VS~ADilalAa~~av~~~GGP~~~v~~GR~D~ 83 (281)
|||||||++. .|+++++|.++..++++|+.||+++ + +|||||||+|||++||+.+|||.|+|++||+|+
T Consensus 55 GG~~Gsirf~------~E~~~~~N~gL~~~~~~i~~iK~~~----~-~VScADilalAa~~AV~~~GGP~~~~~~GR~D~ 123 (251)
T PLN02879 55 GGPFGTIRHP------QELAHDANNGLDIAVRLLDPIKELF----P-ILSYADFYQLAGVVAVEITGGPEIPFHPGRLDK 123 (251)
T ss_pred CCCCeeecCh------hhccCCCcCChHHHHHHHHHHHHHc----C-CcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCC
Confidence 8999999864 6999999996655999999999987 3 799999999999999999999999999999999
Q ss_pred CccccccccCCCCCCCCCHHHHHHHHHHcCCCCchhhhhhhcccccccccccccccccccCCCCCCCCCCCCHHHHHHHH
Q 023510 84 RTANRTLANENLPGPNNSLERLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTFSDRLFNFNSTGNPDPTLNTTLLQQLR 163 (281)
Q Consensus 84 ~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~~e~VaLsGaHtiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~ 163 (281)
.++.+ +.+||.|..+++++++.|+++||+++ |||||+||||||++||. | ++|.|.
T Consensus 124 ~~~~~---~~~lP~p~~~~~~l~~~F~~~Gl~~~-dlVALsGaHTiG~ah~~----r-~g~~g~---------------- 178 (251)
T PLN02879 124 VEPPP---EGRLPQATKGVDHLRDVFGRMGLNDK-DIVALSGGHTLGRCHKE----R-SGFEGA---------------- 178 (251)
T ss_pred CCCCc---ccCCCCCCCCHHHHHHHHHHcCCCHH-HHeeeeccccccccccc----c-ccCCCC----------------
Confidence 98853 56899999999999999999999999 99999999999999995 4 454432
Q ss_pred hhCCCCCCCCcccccCCCCCcccChHHHHHHhhc--cCc--ccccccccCCChhhHHHHHHHHhhCHHHHHHHHHHHHHH
Q 023510 164 QLCPQGGNGSVLTNLDVTTPDVFDNKYFFNLQIH--KGL--LQSDQELFSTPGADTAAIVNNFGRNQTAFFENFVTSMIR 239 (281)
Q Consensus 164 ~~Cp~~~~~~~~~~ld~~tp~~FDN~Yy~~l~~~--~gl--L~SD~~L~~d~~~~t~~~V~~yA~~~~~F~~dFa~Am~K 239 (281)
.| .||.+|||+||++|+.+ +|+ |+||++|+.|+ +|+++|++||.|++.|+++|++||+|
T Consensus 179 --------------~d-~tp~~FDN~Yy~~ll~~~~~gll~L~SD~aL~~D~--~t~~~V~~~A~d~~~F~~~Fa~Am~K 241 (251)
T PLN02879 179 --------------WT-PNPLIFDNSYFKEILSGEKEGLLQLPTDKALLDDP--LFLPFVEKYAADEDAFFEDYTEAHLK 241 (251)
T ss_pred --------------CC-CCccceeHHHHHHHHcCCcCCCccchhhHHHhcCC--cHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 12 68999999999999998 887 67999999999 99999999999999999999999999
Q ss_pred hhcCCCC
Q 023510 240 MGNLKPL 246 (281)
Q Consensus 240 m~~lgv~ 246 (281)
|++||+.
T Consensus 242 L~~lg~~ 248 (251)
T PLN02879 242 LSELGFA 248 (251)
T ss_pred HHccCCC
Confidence 9999974
No 6
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=6.9e-55 Score=394.07 Aligned_cols=191 Identities=30% Similarity=0.518 Sum_probs=172.0
Q ss_pred CCC--cccceeeccCCCCCccccccCCCCCchhhHHHHHHHHHHHHhhCCCcccHHHHHHHhhhhhhhhcCCCceeecCC
Q 023510 2 LFQ--GCDASILLDNTTTIVSEKFAAPNNNSARGFEVVDDMKAAVERACPGVVSCADILTIAAEQSVALSGGPSWTNLLG 79 (281)
Q Consensus 2 fv~--GcDaSill~~~~~~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VS~ADilalAa~~av~~~GGP~~~v~~G 79 (281)
|++ ||||||.+ .+|+++++|.++.+||++|+.||+++ ++|||||||+||||+||+++|||.|+|++|
T Consensus 50 ~~~~GG~dgSi~~------~~E~~~~~N~gl~~~~~~i~~ik~~~-----~~VScADilalAardAV~~~GGP~~~v~~G 118 (250)
T PLN02364 50 QSRTGGPFGTMRF------DAEQAHGANSGIHIALRLLDPIREQF-----PTISFADFHQLAGVVAVEVTGGPDIPFHPG 118 (250)
T ss_pred CCCCCCCCccccc------cccccCCCccCHHHHHHHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhcCCCeeCCCCC
Confidence 454 99999954 36999999996568999999999987 389999999999999999999999999999
Q ss_pred CCCCCccccccccCCCCCCCCCHHHHHHHHHH-cCCCCchhhhhhhcccccccccccccccccccCCCCCCCCCCCCHHH
Q 023510 80 RRDSRTANRTLANENLPGPNNSLERLKDRFRN-VGLNDNFDLVALSGAHTFGRAQCRTFSDRLFNFNSTGNPDPTLNTTL 158 (281)
Q Consensus 80 R~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~-~Gl~~~~e~VaLsGaHtiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~ 158 (281)
|+|+.++.+ ..+||.|..+++++++.|++ +||+.+ |||+|+||||||++|| .|+ +|.|.
T Consensus 119 R~D~~~s~~---~~~lP~p~~~~~~l~~~F~~~~Gl~~~-d~VaLsGaHTiG~~hc----~r~-~~~g~----------- 178 (250)
T PLN02364 119 REDKPQPPP---EGRLPDATKGCDHLRDVFAKQMGLSDK-DIVALSGAHTLGRCHK----DRS-GFEGA----------- 178 (250)
T ss_pred CCCcccccc---cCCCCCCCcCHHHHHHHHHHhcCCCHH-HheeeecceeeccccC----CCC-CCCCC-----------
Confidence 999999864 45799999999999999996 699999 9999999999999999 354 44331
Q ss_pred HHHHHhhCCCCCCCCcccccCCCCCcccChHHHHHHhhc--cCccc--ccccccCCChhhHHHHHHHHhhCHHHHHHHHH
Q 023510 159 LQQLRQLCPQGGNGSVLTNLDVTTPDVFDNKYFFNLQIH--KGLLQ--SDQELFSTPGADTAAIVNNFGRNQTAFFENFV 234 (281)
Q Consensus 159 ~~~L~~~Cp~~~~~~~~~~ld~~tp~~FDN~Yy~~l~~~--~glL~--SD~~L~~d~~~~t~~~V~~yA~~~~~F~~dFa 234 (281)
+ + .||.+|||+||++|+.+ +|+|. ||++|+.|+ +|+.+|+.||.|++.|+++|+
T Consensus 179 --------------~-----~-~tp~~fDn~Yy~~ll~~~~~gll~l~sD~~L~~d~--~T~~~v~~~a~~~~~F~~~Fa 236 (250)
T PLN02364 179 --------------W-----T-SNPLIFDNSYFKELLSGEKEGLLQLVSDKALLDDP--VFRPLVEKYAADEDAFFADYA 236 (250)
T ss_pred --------------C-----C-CCCCccchHHHHHHhcCCcCCCccccchHHHccCc--hHHHHHHHHhhCHHHHHHHHH
Confidence 1 1 68999999999999998 89865 999999999 999999999999999999999
Q ss_pred HHHHHhhcCCC
Q 023510 235 TSMIRMGNLKP 245 (281)
Q Consensus 235 ~Am~Km~~lgv 245 (281)
+||+||++||+
T Consensus 237 ~Am~Km~~lg~ 247 (250)
T PLN02364 237 EAHMKLSELGF 247 (250)
T ss_pred HHHHHHHccCC
Confidence 99999999997
No 7
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=1.5e-54 Score=393.12 Aligned_cols=198 Identities=25% Similarity=0.412 Sum_probs=176.1
Q ss_pred cccceeeccCC---CCCccccccCCCCCchhhHHHHHHHHHHHHhhCCCcccHHHHHHHhhhhhhhhcCCCceeecCCCC
Q 023510 5 GCDASILLDNT---TTIVSEKFAAPNNNSARGFEVVDDMKAAVERACPGVVSCADILTIAAEQSVALSGGPSWTNLLGRR 81 (281)
Q Consensus 5 GcDaSill~~~---~~~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VS~ADilalAa~~av~~~GGP~~~v~~GR~ 81 (281)
+||+|+++..+ ..+.+|+++++|.++.++|++|+.||+++ | +|||||||+||||+||+.+|||.|+|++||+
T Consensus 43 ~~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~iK~~~----~-~VScADilalAar~Av~~~GGP~~~v~~GR~ 117 (253)
T cd00691 43 TYDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPIKKKY----P-DISYADLWQLAGVVAIEEMGGPKIPFRPGRV 117 (253)
T ss_pred ccccccCCCCCCccccchhhcCCccccchHHHHHHHHHHHHHc----C-CCCHHHHHHHHHHHHHHHcCCCccCcccCCC
Confidence 46666665432 12347999999996558999999999876 5 7999999999999999999999999999999
Q ss_pred CCCccccccccCCCCCCCCCHHHHHHHHHHcCCCCchhhhhhhcccccccccccccccccccCCCCCCCCCCCCHHHHHH
Q 023510 82 DSRTANRTLANENLPGPNNSLERLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTFSDRLFNFNSTGNPDPTLNTTLLQQ 161 (281)
Q Consensus 82 D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~~e~VaLsGaHtiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~ 161 (281)
|+.++....++.+||.|..+++++++.|+++||+.+ |||+|+||||||++||.. ++|.|+
T Consensus 118 D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~-d~VaLsGaHTiG~a~c~~-----~~~~g~-------------- 177 (253)
T cd00691 118 DASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQ-EIVALSGAHTLGRCHKER-----SGYDGP-------------- 177 (253)
T ss_pred CCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHH-HHHHhcccceeecccccC-----CCCCCC--------------
Confidence 999998766777899999999999999999999999 999999999999999953 344331
Q ss_pred HHhhCCCCCCCCcccccCCCCCcccChHHHHHHhhccC--------cccccccccCCChhhHHHHHHHHhhCHHHHHHHH
Q 023510 162 LRQLCPQGGNGSVLTNLDVTTPDVFDNKYFFNLQIHKG--------LLQSDQELFSTPGADTAAIVNNFGRNQTAFFENF 233 (281)
Q Consensus 162 L~~~Cp~~~~~~~~~~ld~~tp~~FDN~Yy~~l~~~~g--------lL~SD~~L~~d~~~~t~~~V~~yA~~~~~F~~dF 233 (281)
|..||.+|||.||++|+.++| +|+||++|+.|+ +|+.+|+.||.|+++|+++|
T Consensus 178 -----------------~~~tp~~FDn~Yy~~ll~~~g~~~~~~~~~L~sD~~L~~d~--~t~~~v~~~a~~~~~F~~~F 238 (253)
T cd00691 178 -----------------WTKNPLKFDNSYFKELLEEDWKLPTPGLLMLPTDKALLEDP--KFRPYVELYAKDQDAFFKDY 238 (253)
T ss_pred -----------------CCCCCCcccHHHHHHHhcCCCccCcCcceechhhHHHHcCc--cHHHHHHHHhhCHHHHHHHH
Confidence 115999999999999999999 999999999999 99999999999999999999
Q ss_pred HHHHHHhhcCCCC
Q 023510 234 VTSMIRMGNLKPL 246 (281)
Q Consensus 234 a~Am~Km~~lgv~ 246 (281)
++||+||+++||.
T Consensus 239 a~Am~Km~~l~v~ 251 (253)
T cd00691 239 AEAHKKLSELGVP 251 (253)
T ss_pred HHHHHHHHhcCCC
Confidence 9999999999985
No 8
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=8.1e-54 Score=399.04 Aligned_cols=207 Identities=28% Similarity=0.417 Sum_probs=184.4
Q ss_pred CcccceeeccCCCCCccccccCCCCCchhhHHHHHHHHHHHHhhCCCcccHHHHHHHhhhhhhhhc-CCCceeecCCCCC
Q 023510 4 QGCDASILLDNTTTIVSEKFAAPNNNSARGFEVVDDMKAAVERACPGVVSCADILTIAAEQSVALS-GGPSWTNLLGRRD 82 (281)
Q Consensus 4 ~GcDaSill~~~~~~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VS~ADilalAa~~av~~~-GGP~~~v~~GR~D 82 (281)
+||||||||++ +.|+++++|. +++ ++|+.||..+|+.| |||||||+||||+||+.+ |||.|+|++||+|
T Consensus 64 gGcDgSill~~----~~E~~~~~N~-gL~--~vvd~lk~~~e~~c---VScADiialAa~~AV~~~~GGP~i~v~~GR~D 133 (328)
T cd00692 64 GGADGSIVLFD----DIETAFHANI-GLD--EIVEALRPFHQKHN---VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKD 133 (328)
T ss_pred CCcCceeecCC----cccccCCCCC-CHH--HHHHHHHHHHHhcC---cCHHHHHHHHHHHHHHhcCCCCcccccCCCCC
Confidence 89999999985 2699999998 455 89999999999988 999999999999999965 9999999999999
Q ss_pred CCccccccccCCCCCCCCCHHHHHHHHHHcCCCCchhhhhhhcccccccccccccccccccCCCCCCCCCCCCHHHHHHH
Q 023510 83 SRTANRTLANENLPGPNNSLERLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTFSDRLFNFNSTGNPDPTLNTTLLQQL 162 (281)
Q Consensus 83 ~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~~e~VaLsGaHtiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L 162 (281)
+.++.+ +.+||.|..++++|++.|+++||+.+ |||+|+||||||++|. +||+++.
T Consensus 134 ~~~s~~---~g~LP~p~~sv~~l~~~F~~~Gf~~~-E~VaLsGAHTiG~a~~---------------~Dps~~g------ 188 (328)
T cd00692 134 ATQPAP---DGLVPEPFDSVDKILARFADAGFSPD-ELVALLAAHSVAAQDF---------------VDPSIAG------ 188 (328)
T ss_pred CCCCCc---ccCCCCCCCCHHHHHHHHHHcCCCHH-HHhhhcccccccccCC---------------CCCCCCC------
Confidence 998864 45799999999999999999999999 9999999999999983 3565541
Q ss_pred HhhCCCCCCCCcccccCCCCCcccChHHHHHHh-hccC-------------------cccccccccCCChhhHHHHHHHH
Q 023510 163 RQLCPQGGNGSVLTNLDVTTPDVFDNKYFFNLQ-IHKG-------------------LLQSDQELFSTPGADTAAIVNNF 222 (281)
Q Consensus 163 ~~~Cp~~~~~~~~~~ld~~tp~~FDN~Yy~~l~-~~~g-------------------lL~SD~~L~~d~~~~t~~~V~~y 222 (281)
.++| .||.+|||+||++++ .+.+ +|+||++|+.|+ +|+.+|+.|
T Consensus 189 -------------~p~D-~TP~~FDn~Yf~~ll~~~~~~~g~~~~~~e~~~~~~g~~~L~SD~~L~~D~--~T~~~v~~f 252 (328)
T cd00692 189 -------------TPFD-STPGVFDTQFFIETLLKGTAFPGSGGNQGEVESPLPGEFRLQSDFLLARDP--RTACEWQSF 252 (328)
T ss_pred -------------CCCC-CCcchhcHHHHHHHHHcCCCCCCccccccccccCccccccccchHHHhcCC--cHHHHHHHH
Confidence 3577 699999999999987 5555 499999999999 999999999
Q ss_pred hhCHHHHHHHHHHHHHHhhcCCCCCCCCCccccccccccCCCc
Q 023510 223 GRNQTAFFENFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGNSN 265 (281)
Q Consensus 223 A~~~~~F~~dFa~Am~Km~~lgv~tg~~GeiR~~C~~~n~~~~ 265 (281)
|.||++|+++|++||+||++|||. ...+.+|+.|++...
T Consensus 253 a~dq~~f~~~Fa~Am~KLs~lgv~----~~~l~dcs~v~p~~~ 291 (328)
T cd00692 253 VNNQAKMNAAFAAAMLKLSLLGQD----NISLTDCSDVIPPPK 291 (328)
T ss_pred hcCHHHHHHHHHHHHHHHHcCCCC----cchhccCcccCCCCC
Confidence 999999999999999999999995 336889999997554
No 9
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=7.1e-52 Score=391.99 Aligned_cols=228 Identities=21% Similarity=0.328 Sum_probs=201.8
Q ss_pred Cccc-ceeeccCCCCCccccccCCCCCchhhHHHHHHHHHHHHhhCCCcccHHHHHHHhhhhhhhhcCCCceeecCCCCC
Q 023510 4 QGCD-ASILLDNTTTIVSEKFAAPNNNSARGFEVVDDMKAAVERACPGVVSCADILTIAAEQSVALSGGPSWTNLLGRRD 82 (281)
Q Consensus 4 ~GcD-aSill~~~~~~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VS~ADilalAa~~av~~~GGP~~~v~~GR~D 82 (281)
||++ |+|.+. +|++++.|.++.+++.+|++||+++ |..||+||+|+||+.+|||.+|||.|+|.+||.|
T Consensus 91 GG~ngg~iRf~------pe~~~~~N~gL~~a~~~L~pik~k~----~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~D 160 (409)
T cd00649 91 GGAGTGQQRFA------PLNSWPDNVNLDKARRLLWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGRED 160 (409)
T ss_pred CCCCCCccccc------cccCcHhhhhHHHHHHHHHHHHHHc----CCCccHHHHHHHHHHHHHHHcCCCcccccCCCCc
Confidence 7887 899876 6999999998888999999999876 5469999999999999999999999999999999
Q ss_pred CCccccc-------------------------------------cccCCCCCCCCCHHHHHHHHHHcCCCCchhhhhh-h
Q 023510 83 SRTANRT-------------------------------------LANENLPGPNNSLERLKDRFRNVGLNDNFDLVAL-S 124 (281)
Q Consensus 83 ~~~s~~~-------------------------------------~~~~~lP~p~~~~~~l~~~F~~~Gl~~~~e~VaL-s 124 (281)
...+... +.+.+||.|..++.+|++.|.+|||+++ ||||| +
T Consensus 161 a~~~~~~v~wg~~~~~~~~~~~~~~~~l~~pl~a~~mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~-E~VAL~s 239 (409)
T cd00649 161 VWEPDEDVYWGPEKEWLADKRYSGDRDLENPLAAVQMGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDE-ETVALIA 239 (409)
T ss_pred cCCCccccccCcchhcccccccccchhhccchhhhhccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHH-HHeeecc
Confidence 9764320 1122699999999999999999999999 99999 5
Q ss_pred cccccccccccccccccccCCCCCCCCCCCCHHHHHHHH--hhCCCCCC-CCcccccC---CCCCcccChHHHHHHhh--
Q 023510 125 GAHTFGRAQCRTFSDRLFNFNSTGNPDPTLNTTLLQQLR--QLCPQGGN-GSVLTNLD---VTTPDVFDNKYFFNLQI-- 196 (281)
Q Consensus 125 GaHtiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~--~~Cp~~~~-~~~~~~ld---~~tp~~FDN~Yy~~l~~-- 196 (281)
||||||++||..|.+||. +||.+++.|++.|. ++||...+ +..++.+| +.||.+|||+||++|+.
T Consensus 240 GAHTiGkaHc~~~~~rlg-------~dP~~~~~~~~gLgw~~~Cp~g~g~~t~~sglDG~Wt~tP~~FDN~YF~nLl~~e 312 (409)
T cd00649 240 GGHTFGKTHGAGPASHVG-------PEPEAAPIEQQGLGWKNSYGTGKGKDTITSGLEGAWTPTPTKWDNNYLKNLFGYE 312 (409)
T ss_pred CCcceeecCcccccccCC-------CCCCcCHHHHHhhcccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHHhcc
Confidence 999999999999999982 69999999999995 89997533 33455677 57999999999999998
Q ss_pred ----------------------------------ccCcccccccccCCChhhHHHHHHHHhhCHHHHHHHHHHHHHHh--
Q 023510 197 ----------------------------------HKGLLQSDQELFSTPGADTAAIVNNFGRNQTAFFENFVTSMIRM-- 240 (281)
Q Consensus 197 ----------------------------------~~glL~SD~~L~~d~~~~t~~~V~~yA~~~~~F~~dFa~Am~Km-- 240 (281)
+++||+||++|+.|+ +++++|++||.|++.|+++|++||+||
T Consensus 313 W~~~~~p~g~~Q~~~~~~~~~~~~~d~~~~~~~~~~gmL~SD~aL~~Dp--~tr~iV~~yA~d~~~Ff~dFA~A~~KL~h 390 (409)
T cd00649 313 WELTKSPAGAWQWVPKNAAGENTVPDAHDPSKKHAPMMLTTDLALRFDP--EYEKISRRFLENPDEFADAFAKAWFKLTH 390 (409)
T ss_pred ceeccCCCCcccccccCccccccCCCccccccccCcccchhhHhhhcCc--cHHHHHHHHhcCHHHHHHHHHHHHHHHcc
Confidence 568999999999999 999999999999999999999999999
Q ss_pred hcCCCCCCCCC
Q 023510 241 GNLKPLTGNQG 251 (281)
Q Consensus 241 ~~lgv~tg~~G 251 (281)
+.+||++..-|
T Consensus 391 rdmgp~~~~~g 401 (409)
T cd00649 391 RDMGPKSRYLG 401 (409)
T ss_pred ccCCchhhhcC
Confidence 57999887766
No 10
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=2.1e-49 Score=360.23 Aligned_cols=194 Identities=34% Similarity=0.517 Sum_probs=176.9
Q ss_pred CcccceeeccCCCCCccccccCCCCCchhhHHHHHHHHHHHHhhCCCcccHHHHHHHhhhhhhhhc--CCCceeecCCCC
Q 023510 4 QGCDASILLDNTTTIVSEKFAAPNNNSARGFEVVDDMKAAVERACPGVVSCADILTIAAEQSVALS--GGPSWTNLLGRR 81 (281)
Q Consensus 4 ~GcDaSill~~~~~~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VS~ADilalAa~~av~~~--GGP~~~v~~GR~ 81 (281)
+||||||+++ +|+++++|.++.+++++|+.||.++++ |++|||||||+||+++||+.+ |||.|+|++||+
T Consensus 40 gg~dgsi~~~------~e~~~~~N~~l~~~~~~l~~ik~~~~~--~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~ 111 (255)
T cd00314 40 GGADGSIRFE------PELDRPENGGLDKALRALEPIKSAYDG--GNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRL 111 (255)
T ss_pred CCCCceEecc------ccccCcccccHHHHHHHHHHHHHHcCC--CCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCC
Confidence 5999999997 399999999777999999999999988 889999999999999999999 999999999999
Q ss_pred CCCccc--cccccCCCCCCCCCHHHHHHHHHHcCCCCchhhhhhh-ccccc-ccccccccccccccCCCCCCCCCCCCHH
Q 023510 82 DSRTAN--RTLANENLPGPNNSLERLKDRFRNVGLNDNFDLVALS-GAHTF-GRAQCRTFSDRLFNFNSTGNPDPTLNTT 157 (281)
Q Consensus 82 D~~~s~--~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~~e~VaLs-GaHti-G~~hc~~f~~Rl~~f~g~~~~dp~~d~~ 157 (281)
|+..+. ...+...+|.|..++.++++.|+++||+.+ |||||+ ||||| |++||..|..|+
T Consensus 112 D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~-e~VAL~~GaHti~G~~~~~~~~~~~---------------- 174 (255)
T cd00314 112 DATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPS-ELVALSAGAHTLGGKNHGDLLNYEG---------------- 174 (255)
T ss_pred CCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHH-HHHhhccCCeeccCcccCCCCCccc----------------
Confidence 999764 223456688888899999999999999999 999999 99999 999998776664
Q ss_pred HHHHHHhhCCCCCCCCcccccCCCCCcccChHHHHHHhhcc----------------CcccccccccCCChhhHHHHHHH
Q 023510 158 LLQQLRQLCPQGGNGSVLTNLDVTTPDVFDNKYFFNLQIHK----------------GLLQSDQELFSTPGADTAAIVNN 221 (281)
Q Consensus 158 ~~~~L~~~Cp~~~~~~~~~~ld~~tp~~FDN~Yy~~l~~~~----------------glL~SD~~L~~d~~~~t~~~V~~ 221 (281)
| .+|..||.+|||.||++|+.++ ++|+||++|+.|+ +|+.+|+.
T Consensus 175 --------~----------~~~~~tp~~fDN~yy~~l~~~~~~~~~~~~~~~~~~~~~~l~sD~~L~~d~--~t~~~v~~ 234 (255)
T cd00314 175 --------S----------GLWTSTPFTFDNAYFKNLLDMNWEWRVGSPDPDGVKGPGLLPSDYALLSDS--ETRALVER 234 (255)
T ss_pred --------C----------CCCCCCCCccchHHHHHHhcCCcccccCCccCCCcccCCCchhhHHHhcCH--hHHHHHHH
Confidence 1 2344799999999999999988 8999999999999 99999999
Q ss_pred HhhCHHHHHHHHHHHHHHhhc
Q 023510 222 FGRNQTAFFENFVTSMIRMGN 242 (281)
Q Consensus 222 yA~~~~~F~~dFa~Am~Km~~ 242 (281)
||.|+++|+++|++||+||++
T Consensus 235 ya~~~~~f~~~Fa~a~~Km~~ 255 (255)
T cd00314 235 YASDQEKFFEDFAKAWIKMVN 255 (255)
T ss_pred HHhCHHHHHHHHHHHHHHHcC
Confidence 999999999999999999975
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=5.1e-49 Score=393.68 Aligned_cols=228 Identities=23% Similarity=0.317 Sum_probs=198.4
Q ss_pred Ccc-cceeeccCCCCCccccccCCCCCchhhHHHHHHHHHHHHhhCCCcccHHHHHHHhhhhhhhhcCCCceeecCCCCC
Q 023510 4 QGC-DASILLDNTTTIVSEKFAAPNNNSARGFEVVDDMKAAVERACPGVVSCADILTIAAEQSVALSGGPSWTNLLGRRD 82 (281)
Q Consensus 4 ~Gc-DaSill~~~~~~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VS~ADilalAa~~av~~~GGP~~~v~~GR~D 82 (281)
||| .|+|.+. +|++|+.|.++.+++.+|++||++ ||++|||||||+||+++|||.+|||.|+|.+||+|
T Consensus 101 GGa~gg~iRf~------P~~sw~~N~~Ldka~~lL~pIk~k----yp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D 170 (716)
T TIGR00198 101 GGAATGNQRFA------PLNSWPDNVNLDKARRLLWPIKKK----YGNKLSWADLIILAGTVAYESMGLKVFGFAGGRED 170 (716)
T ss_pred CCCCCCceecc------cccCchhhhhHHHHHHHHHHHHHH----CCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCC
Confidence 688 4888776 699999999888899999988875 79899999999999999999999999999999999
Q ss_pred CCcccc------------------------------------ccccCCCCCCCCCHHHHHHHHHHcCCCCchhhhhhh-c
Q 023510 83 SRTANR------------------------------------TLANENLPGPNNSLERLKDRFRNVGLNDNFDLVALS-G 125 (281)
Q Consensus 83 ~~~s~~------------------------------------~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~~e~VaLs-G 125 (281)
+..+.. .....++|.|..++.+|++.|.+|||+++ |||||+ |
T Consensus 171 ~~~~~~d~~~g~e~~~l~~~~~~~~~l~~p~a~~~~Gliyvnpeg~~~lPdP~~sa~~Lrd~F~rmGLnd~-EmVALiaG 249 (716)
T TIGR00198 171 IWEPDKDIYWGAEKEWLTSSREDRESLENPLAATEMGLIYVNPEGPDGHPDPLCTAQDIRTTFARMGMNDE-ETVALIAG 249 (716)
T ss_pred CCCcccccccccccchhhccccccccccccchhhhccccccCcccccCCCCCCCCHHHHHHHHHHcCCChH-HHeeeecC
Confidence 954321 01122699999999999999999999999 999995 9
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCHHHHHHHHhhCCCCC---CCCcccccC---CCCCcccChHHHHHHhhc--
Q 023510 126 AHTFGRAQCRTFSDRLFNFNSTGNPDPTLNTTLLQQLRQLCPQGG---NGSVLTNLD---VTTPDVFDNKYFFNLQIH-- 197 (281)
Q Consensus 126 aHtiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~---~~~~~~~ld---~~tp~~FDN~Yy~~l~~~-- 197 (281)
|||||++||.+|.+|| .+||++++.|++.|+.+||.+. .++.++.+| +.||.+|||.||++|+.+
T Consensus 250 aHTiGkaHc~s~~~rl-------g~dP~~~~~~~~gLg~~c~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w 322 (716)
T TIGR00198 250 GHTVGKCHGAGPAELI-------GPDPEGAPIEEQGLGWHNQYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEW 322 (716)
T ss_pred ceeccccCCCcccccC-------CCCCCcCHHHHHHhcccCCCCCCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCc
Confidence 9999999999999998 2799999999999999998532 223356676 579999999999999975
Q ss_pred --------------------------------cCcccccccccCCChhhHHHHHHHHhhCHHHHHHHHHHHHHHhhc--C
Q 023510 198 --------------------------------KGLLQSDQELFSTPGADTAAIVNNFGRNQTAFFENFVTSMIRMGN--L 243 (281)
Q Consensus 198 --------------------------------~glL~SD~~L~~d~~~~t~~~V~~yA~~~~~F~~dFa~Am~Km~~--l 243 (281)
.++|+||++|+.|+ +++.+|++||.|++.|+++|++||+||++ +
T Consensus 323 ~~~~s~~g~~q~~~~~~~~~~p~~~~~~~~~~~~mL~SDlaL~~Dp--~~r~iVe~yA~d~~~F~~dFA~Aw~KL~~~d~ 400 (716)
T TIGR00198 323 ELKKSPAGAWQWEAVDAPEIIPDVEDPNKKHNPIMLDADLALRFDP--EFRKISRRFLREPDYFAEAFAKAWFKLTHRDM 400 (716)
T ss_pred eeeecCCCCceeeecccccccccccccccccccCccchhHHhccCc--cHHHHHHHHhcCHHHHHHHHHHHHHHHccccc
Confidence 68999999999999 99999999999999999999999999994 7
Q ss_pred CCCCCCCC
Q 023510 244 KPLTGNQG 251 (281)
Q Consensus 244 gv~tg~~G 251 (281)
|++...-|
T Consensus 401 gp~~~y~g 408 (716)
T TIGR00198 401 GPKSRYIG 408 (716)
T ss_pred CchhhhcC
Confidence 76554444
No 12
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=1.3e-46 Score=374.66 Aligned_cols=228 Identities=22% Similarity=0.329 Sum_probs=198.9
Q ss_pred Cccc-ceeeccCCCCCccccccCCCCCchhhHHHHHHHHHHHHhhCCCcccHHHHHHHhhhhhhhhcCCCceeecCCCCC
Q 023510 4 QGCD-ASILLDNTTTIVSEKFAAPNNNSARGFEVVDDMKAAVERACPGVVSCADILTIAAEQSVALSGGPSWTNLLGRRD 82 (281)
Q Consensus 4 ~GcD-aSill~~~~~~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VS~ADilalAa~~av~~~GGP~~~v~~GR~D 82 (281)
|||+ |+|.+. +|.+|+.|.++.+++.+|++||+++ |..||+||+|+||+.+|||.+|||.|+|.+||.|
T Consensus 103 GGangg~iRf~------pe~~w~~N~gL~ka~~~L~pik~ky----~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D 172 (726)
T PRK15061 103 GGAGGGQQRFA------PLNSWPDNVNLDKARRLLWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGRED 172 (726)
T ss_pred CCCCCCcccCc------ccccchhhhhHHHHHHHHHHHHHHh----CCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCC
Confidence 7886 888775 6999999998888999999999986 5579999999999999999999999999999999
Q ss_pred CCccccc--------------------------------------cccCCCCCCCCCHHHHHHHHHHcCCCCchhhhhhh
Q 023510 83 SRTANRT--------------------------------------LANENLPGPNNSLERLKDRFRNVGLNDNFDLVALS 124 (281)
Q Consensus 83 ~~~s~~~--------------------------------------~~~~~lP~p~~~~~~l~~~F~~~Gl~~~~e~VaLs 124 (281)
...+... +.+..+|.|..++.+|++.|.+|||+++ |||||+
T Consensus 173 ~~~~~~~v~wg~e~~~l~~~~r~~~~~~l~~pl~a~~mgliyvnpegp~glPdP~~sa~~lR~tF~RMGmnDe-EtVALi 251 (726)
T PRK15061 173 VWEPEEDVYWGPEKEWLGGDERYSGERDLENPLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDE-ETVALI 251 (726)
T ss_pred CcCCccccccCccccccccccccccccccccchhhhhccceecCCCCCCCCCCcccCHHHHHHHHHHcCCCHH-Hheeec
Confidence 8654321 0122479999999999999999999999 999995
Q ss_pred -cccccccccccccccccccCCCCCCCCCCCCHHHHHHHH--hhCCCCC-CCCcccccC---CCCCcccChHHHHHHhhc
Q 023510 125 -GAHTFGRAQCRTFSDRLFNFNSTGNPDPTLNTTLLQQLR--QLCPQGG-NGSVLTNLD---VTTPDVFDNKYFFNLQIH 197 (281)
Q Consensus 125 -GaHtiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~--~~Cp~~~-~~~~~~~ld---~~tp~~FDN~Yy~~l~~~ 197 (281)
||||||++||..|.+|| .+||.+++.|++.|. +.||.+. +++.+..+| ..||.+|||+||++|+.+
T Consensus 252 aGgHT~GkaHca~~~~rl-------gpdP~~a~~~~qgLgw~~~c~~g~g~dt~tsGldG~Wt~tPt~fDN~YF~nLl~~ 324 (726)
T PRK15061 252 AGGHTFGKTHGAGDASHV-------GPEPEAAPIEEQGLGWKNSYGSGKGADTITSGLEGAWTTTPTQWDNGYFENLFGY 324 (726)
T ss_pred cCCceeeeCCCcCccccc-------CCCCCcCHHHHHhccccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHhhC
Confidence 99999999999999998 279999999999985 8999743 233455676 679999999999999985
Q ss_pred ------------------------------------cCcccccccccCCChhhHHHHHHHHhhCHHHHHHHHHHHHHHhh
Q 023510 198 ------------------------------------KGLLQSDQELFSTPGADTAAIVNNFGRNQTAFFENFVTSMIRMG 241 (281)
Q Consensus 198 ------------------------------------~glL~SD~~L~~d~~~~t~~~V~~yA~~~~~F~~dFa~Am~Km~ 241 (281)
.+||+||++|+.|+ +++++|++||.|+++|+++|++||.||+
T Consensus 325 ~W~~~~sp~G~~qw~~~~~~~~~~~pd~~~~~~~~~~~MLtSD~AL~~DP--~~r~iV~~fA~d~~~F~~~FA~A~~KL~ 402 (726)
T PRK15061 325 EWELTKSPAGAWQWVPKDGAAEDTVPDAHDPSKKHAPTMLTTDLALRFDP--EYEKISRRFLENPEEFADAFARAWFKLT 402 (726)
T ss_pred cceeccCCCccccccccCccccccCCcccccccccCcccccccHHhhcCC--cHHHHHHHHhcCHHHHHHHHHHHHHHHc
Confidence 58999999999999 9999999999999999999999999995
Q ss_pred c--CCCCCCCCC
Q 023510 242 N--LKPLTGNQG 251 (281)
Q Consensus 242 ~--lgv~tg~~G 251 (281)
+ +|+++..-|
T Consensus 403 hrdmgp~~ry~g 414 (726)
T PRK15061 403 HRDMGPKSRYLG 414 (726)
T ss_pred ccCCCchhhhcC
Confidence 5 887665544
No 13
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=1.6e-41 Score=306.54 Aligned_cols=192 Identities=24% Similarity=0.333 Sum_probs=155.4
Q ss_pred CCcccceeeccCCCCCccccccCCCCCchhhHHHHHHHHHHHHhhCCCcccHHHHHHHhhhhhhhhcCCCceeecCCCCC
Q 023510 3 FQGCDASILLDNTTTIVSEKFAAPNNNSARGFEVVDDMKAAVERACPGVVSCADILTIAAEQSVALSGGPSWTNLLGRRD 82 (281)
Q Consensus 3 v~GcDaSill~~~~~~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VS~ADilalAa~~av~~~GGP~~~v~~GR~D 82 (281)
|+||||||+|+.. .+|+...+++..+++|+.|+.+ +|||||||||||++||+.||||.|+|++||+|
T Consensus 62 ~gGcDgSIlle~~---~~En~G~~~n~~l~~~~~i~~~----------~VScADiialAa~~AV~~~GGP~i~v~~GR~D 128 (264)
T cd08201 62 TGGLDASIQYELD---RPENIGSGFNTTLNFFVNFYSP----------RSSMADLIAMGVVTSVASCGGPVVPFRAGRID 128 (264)
T ss_pred CCCCCcceeecCC---ChhhccCchhhccccceeeccC----------ccCHHHHHHHHHHHHHHHcCCCeecccccCCC
Confidence 8999999999843 4677743322256777766432 59999999999999999999999999999999
Q ss_pred CCccccccccCCCCCCCCCHHHHHHHHHHcCCCCchhhhhhhc-ccccccccccccccccccCCCCCCCCCCCCHHHHHH
Q 023510 83 SRTANRTLANENLPGPNNSLERLKDRFRNVGLNDNFDLVALSG-AHTFGRAQCRTFSDRLFNFNSTGNPDPTLNTTLLQQ 161 (281)
Q Consensus 83 ~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~~e~VaLsG-aHtiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~ 161 (281)
+.++.+. +||.|..+++++++.|+++||+.+ |||+|+| |||||++||..|.+++-. | .
T Consensus 129 a~~s~~~----glP~P~~~v~~l~~~Fa~~Gfs~~-DmVaLsggaHTiG~ahc~~f~~~~~~--g------~-------- 187 (264)
T cd08201 129 ATEAGQA----GVPEPQTDLGTTTESFRRQGFSTS-EMIALVACGHTLGGVHSEDFPEIVPP--G------S-------- 187 (264)
T ss_pred ccccccc----cCCCCccCHHHHHHHHHHcCCChH-HHheeecCCeeeeecccccchhhcCC--c------c--------
Confidence 9988653 499999999999999999999999 9999995 999999999988766410 0 0
Q ss_pred HHhhCCCCCCCCcccccCCCCCcccChHHHHHHhhccC----------cccccccccCCChhhHHHHHHHHhhCHHHHHH
Q 023510 162 LRQLCPQGGNGSVLTNLDVTTPDVFDNKYFFNLQIHKG----------LLQSDQELFSTPGADTAAIVNNFGRNQTAFFE 231 (281)
Q Consensus 162 L~~~Cp~~~~~~~~~~ld~~tp~~FDN~Yy~~l~~~~g----------lL~SD~~L~~d~~~~t~~~V~~yA~~~~~F~~ 231 (281)
..+...++| .||.+|||+||.+++.+.. .+.||..++...+ ...++.+| +++.|.+
T Consensus 188 ---------~~~~~~p~d-stp~~FDn~~f~E~l~g~~~~~L~~~~~~~~~sd~r~f~~d~---n~t~~~l~-~~~~f~~ 253 (264)
T cd08201 188 ---------VPDTVLQFF-DTTIQFDNKVVTEYLSGTTNNPLVVGPNNTTNSDLRIFSSDG---NVTMNELA-SPDTFQK 253 (264)
T ss_pred ---------ccCCCCCCC-CCccccchHHHHHHhcCCCCCceeecCCCCccchhhheecCc---cHHHHHhc-ChHHHHH
Confidence 001123556 7999999999999998642 3689999997652 33556777 8999999
Q ss_pred HHHHHHHHhhc
Q 023510 232 NFVTSMIRMGN 242 (281)
Q Consensus 232 dFa~Am~Km~~ 242 (281)
.++..++||.+
T Consensus 254 ~c~~~~~~mi~ 264 (264)
T cd08201 254 TCADILQRMID 264 (264)
T ss_pred HHHHHHHHHhC
Confidence 99999999974
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=1.6e-35 Score=270.66 Aligned_cols=194 Identities=20% Similarity=0.278 Sum_probs=157.1
Q ss_pred Ccccce-eeccCCCCCccccccCCCCC--chhhHHHHHHHHHHHHhh-CC-CcccHHHHHHHhhhhhhhhcCC-----Cc
Q 023510 4 QGCDAS-ILLDNTTTIVSEKFAAPNNN--SARGFEVVDDMKAAVERA-CP-GVVSCADILTIAAEQSVALSGG-----PS 73 (281)
Q Consensus 4 ~GcDaS-ill~~~~~~~~E~~~~~N~~--~~~g~~~i~~iK~~le~~-cp-~~VS~ADilalAa~~av~~~GG-----P~ 73 (281)
|||+|+ |.|. +|++|+.|.+ +.+++.++++||+++... -+ ..||+||+|+||+.+|||.+|| |.
T Consensus 51 GGaNGariRl~------pe~~w~~N~~~~L~~~~~~Le~ik~~~~~~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~ 124 (297)
T cd08200 51 GGANGARIRLA------PQKDWEVNEPEELAKVLAVLEGIQKEFNESQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIK 124 (297)
T ss_pred CCCCcccccCc------cccCcCccCcHHHHHHHHHHHHHHHHhcccccCCccccHHHHHHHHhHHHHHHHHhccCCCce
Confidence 799999 7664 6999999998 778999999999987421 11 1599999999999999999999 99
Q ss_pred eeecCCCCCCCccccccc--cCCCCCCCC------------CHHHHHHHHHHcCCCCchhhhhhhccc-ccccccccccc
Q 023510 74 WTNLLGRRDSRTANRTLA--NENLPGPNN------------SLERLKDRFRNVGLNDNFDLVALSGAH-TFGRAQCRTFS 138 (281)
Q Consensus 74 ~~v~~GR~D~~~s~~~~~--~~~lP~p~~------------~~~~l~~~F~~~Gl~~~~e~VaLsGaH-tiG~~hc~~f~ 138 (281)
|+|.+||.|+..+..... ...+|.+.. ..+.|++.|.++||+++ |||||+||| ++|+.|..+
T Consensus 125 Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~~Lrd~f~rlglsd~-EmvaL~Gg~r~lG~~~~~s-- 201 (297)
T cd08200 125 VPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEEMLVDKAQLLTLTAP-EMTVLVGGLRVLGANYGGS-- 201 (297)
T ss_pred eccCCCCCCcccCCCCcccccccCCCCcccccccccCCCCCHHHHHHHHHHhCCCChH-HHhheecchhhcccCCCCC--
Confidence 999999999987643211 113453321 34788999999999999 999999997 799887532
Q ss_pred cccccCCCCCCCCCCCCHHHHHHHHhhCCCCCCCCcccccCCCCCcccChHHHHHHhhc--------------------c
Q 023510 139 DRLFNFNSTGNPDPTLNTTLLQQLRQLCPQGGNGSVLTNLDVTTPDVFDNKYFFNLQIH--------------------K 198 (281)
Q Consensus 139 ~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~ld~~tp~~FDN~Yy~~l~~~--------------------~ 198 (281)
+.|. | ..+|.+|||.||++|+.. .
T Consensus 202 -----~~G~-------------------------w------T~~p~~f~N~fF~nLLd~~~~W~~~~~~~~~~~~~dr~~ 245 (297)
T cd08200 202 -----KHGV-------------------------F------TDRPGVLTNDFFVNLLDMSTEWKPADEDDGLFEGRDRKT 245 (297)
T ss_pred -----CCCC-------------------------C------cCCCCccccHHHHHHhcccceeeecCCCCCceeeccCCC
Confidence 1121 2 268999999999999941 0
Q ss_pred C-----cccccccccCCChhhHHHHHHHHhhC--HHHHHHHHHHHHHHhhcCC
Q 023510 199 G-----LLQSDQELFSTPGADTAAIVNNFGRN--QTAFFENFVTSMIRMGNLK 244 (281)
Q Consensus 199 g-----lL~SD~~L~~d~~~~t~~~V~~yA~~--~~~F~~dFa~Am~Km~~lg 244 (281)
| ++.+|..|..|+ +.|++|+.||.| ++.|++||++||.||+++.
T Consensus 246 g~~~~~~t~~Dl~l~sd~--~~R~~ve~YA~dd~~~~F~~DF~~A~~Klmeld 296 (297)
T cd08200 246 GEVKWTATRVDLVFGSNS--ELRAVAEVYASDDAQEKFVKDFVAAWTKVMNLD 296 (297)
T ss_pred CceeeccChhhhhhccCH--HHHHHHHHHhcccchhHHHHHHHHHHHHHHhcC
Confidence 1 267899999999 999999999998 9999999999999999874
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=99.97 E-value=1.1e-30 Score=262.16 Aligned_cols=191 Identities=23% Similarity=0.302 Sum_probs=154.7
Q ss_pred Ccccce-eeccCCCCCccccccCCC--CCchhhHHHHHHHHHHHHhhCCCcccHHHHHHHhhhhhhhhc---CCC--cee
Q 023510 4 QGCDAS-ILLDNTTTIVSEKFAAPN--NNSARGFEVVDDMKAAVERACPGVVSCADILTIAAEQSVALS---GGP--SWT 75 (281)
Q Consensus 4 ~GcDaS-ill~~~~~~~~E~~~~~N--~~~~~g~~~i~~iK~~le~~cp~~VS~ADilalAa~~av~~~---GGP--~~~ 75 (281)
||++|+ |.|. +|++|+.| .++.+.+.+++.||+++.+ ..||.||+|+||+.+|||.+ ||| .|+
T Consensus 469 GGaNGariRl~------pe~~w~~N~p~gL~~vl~~Le~Ik~~f~~---~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vp 539 (716)
T TIGR00198 469 GGANGARIRLE------PQKNWPVNEPTRLAKVLAVLEKIQAEFAK---GPVSLADLIVLGGGAAVEKAALDAGISVNVP 539 (716)
T ss_pred CCCCcceeecc------hhcCcccCCHHHHHHHHHHHHHHHHHcCC---CcccHHHHHHHHHHHHHHHHHHhCCCCcccC
Confidence 799999 7765 69999999 7677889999999988631 26999999999999999999 897 579
Q ss_pred ecCCCCCCCccccccccCCCC---CC------------CCCHHHHHHHHHHcCCCCchhhhhhhcc-ccccccccccccc
Q 023510 76 NLLGRRDSRTANRTLANENLP---GP------------NNSLERLKDRFRNVGLNDNFDLVALSGA-HTFGRAQCRTFSD 139 (281)
Q Consensus 76 v~~GR~D~~~s~~~~~~~~lP---~p------------~~~~~~l~~~F~~~Gl~~~~e~VaLsGa-HtiG~~hc~~f~~ 139 (281)
|.+||.|+..... +++...| .+ ....+.|++.|.++||+++ |||||+|| |++|+.|..+
T Consensus 540 f~pGR~Da~~~~t-d~~~~~~l~p~adgfRn~~~~~~~~~~~~~l~d~a~~lglt~~-EmvaL~Gg~r~lG~~~~~s--- 614 (716)
T TIGR00198 540 FLPGRVDATQAMT-DAESFTPLEPIADGFRNYLKRDYAVTPEELLLDKAQLLTLTAP-EMTVLIGGMRVLGANHGGS--- 614 (716)
T ss_pred cCCCCCccccCCC-CccccccCCCCCcccchhccccccCCHHHHHHHHHHhCCCChH-HHHheecchhhccccCCCC---
Confidence 9999999987643 2222222 11 1235678899999999999 99999999 5999998632
Q ss_pred ccccCCCCCCCCCCCCHHHHHHHHhhCCCCCCCCcccccCCCCCcccChHHHHHHhhcc--------------------C
Q 023510 140 RLFNFNSTGNPDPTLNTTLLQQLRQLCPQGGNGSVLTNLDVTTPDVFDNKYFFNLQIHK--------------------G 199 (281)
Q Consensus 140 Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~ld~~tp~~FDN~Yy~~l~~~~--------------------g 199 (281)
+.|. + ..+|.+|||.||++|+... |
T Consensus 615 ----~~G~-------------------------~------T~~p~~f~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr~tg 659 (716)
T TIGR00198 615 ----KHGV-------------------------F------TDRVGVLSNDFFVNLLDMAYEWRAADNNRYLFEGGDRQTG 659 (716)
T ss_pred ----CCCC-------------------------C------cCCCCccccHHHHHHhcCCceeeecCCCCceeeeecCCCC
Confidence 1121 1 1589999999999998620 1
Q ss_pred ---cc--cccccccCCChhhHHHHHHHHhhCH--HHHHHHHHHHHHHhhcCCC
Q 023510 200 ---LL--QSDQELFSTPGADTAAIVNNFGRNQ--TAFFENFVTSMIRMGNLKP 245 (281)
Q Consensus 200 ---lL--~SD~~L~~d~~~~t~~~V~~yA~~~--~~F~~dFa~Am~Km~~lgv 245 (281)
++ .+|..|..|+ +.|++|+.||+|+ +.|++||++||.||++++-
T Consensus 660 ~~~~~~t~~Dl~~~sd~--~lra~aE~YA~dd~~~~F~~DF~~Aw~Klm~ldr 710 (716)
T TIGR00198 660 EVKWTATRVDLVFGSNS--ILRAVAEVYAQDDAREKFVKDFVAAWTKVMNLDR 710 (716)
T ss_pred ceeeccChhheeeccCH--HHHHHHHHHhcccccchHHHHHHHHHHHHHhCCC
Confidence 22 6799999999 9999999999997 8999999999999999984
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=99.97 E-value=1.7e-30 Score=259.51 Aligned_cols=195 Identities=21% Similarity=0.297 Sum_probs=158.4
Q ss_pred Ccccce-eeccCCCCCccccccCCCC--CchhhHHHHHHHHHHHHhhC--CCcccHHHHHHHhhhhhhhhc---CC--Cc
Q 023510 4 QGCDAS-ILLDNTTTIVSEKFAAPNN--NSARGFEVVDDMKAAVERAC--PGVVSCADILTIAAEQSVALS---GG--PS 73 (281)
Q Consensus 4 ~GcDaS-ill~~~~~~~~E~~~~~N~--~~~~g~~~i~~iK~~le~~c--p~~VS~ADilalAa~~av~~~---GG--P~ 73 (281)
||++|+ |.|. +|++|+.|. ++.+.+.+++.||+++...- ...||.||+|+||+.+|||.+ || |.
T Consensus 476 GGaNGarIRl~------Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~~~~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~ 549 (726)
T PRK15061 476 GGANGARIRLA------PQKDWEVNEPAQLAKVLAVLEGIQAEFNAAQSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVT 549 (726)
T ss_pred CCCCccceecc------cccCccccCHHHHHHHHHHHHHHHHHHhhccCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 799999 8776 699999999 67789999999999985432 125999999999999999998 68 99
Q ss_pred eeecCCCCCCCccccccc--cCCCCCCC------------CCHHHHHHHHHHcCCCCchhhhhhhccc-ccccccccccc
Q 023510 74 WTNLLGRRDSRTANRTLA--NENLPGPN------------NSLERLKDRFRNVGLNDNFDLVALSGAH-TFGRAQCRTFS 138 (281)
Q Consensus 74 ~~v~~GR~D~~~s~~~~~--~~~lP~p~------------~~~~~l~~~F~~~Gl~~~~e~VaLsGaH-tiG~~hc~~f~ 138 (281)
|+|.+||.|+........ ...+|..+ ...+.|++.|.++||+++ |||||+||| ++|+.|..+
T Consensus 550 VPf~pGR~Da~~~~td~esf~~l~P~Adgfrny~~~~~~~~~e~~L~d~a~~lglt~~-EmvaL~Gg~r~Lg~~~~~S-- 626 (726)
T PRK15061 550 VPFTPGRTDATQEQTDVESFAVLEPKADGFRNYLKKGYSVSPEELLVDKAQLLTLTAP-EMTVLVGGLRVLGANYGGS-- 626 (726)
T ss_pred cCcCCCCCCcccCCCCcccccccCCCCccccccccccCCCCHHHHHHHHHHhCCCChH-HHhheecchhhcccCCCCC--
Confidence 999999999987643211 12456533 124788999999999999 999999997 788887432
Q ss_pred cccccCCCCCCCCCCCCHHHHHHHHhhCCCCCCCCcccccCCCCCcccChHHHHHHhhc----------c----------
Q 023510 139 DRLFNFNSTGNPDPTLNTTLLQQLRQLCPQGGNGSVLTNLDVTTPDVFDNKYFFNLQIH----------K---------- 198 (281)
Q Consensus 139 ~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~ld~~tp~~FDN~Yy~~l~~~----------~---------- 198 (281)
+.|. + ..+|.+|||.||++|+.- .
T Consensus 627 -----~~G~-------------------------~------T~~p~~fsNdfFvnLLdm~~~W~~~~~~~~~ye~~Dr~t 670 (726)
T PRK15061 627 -----KHGV-------------------------F------TDRPGVLTNDFFVNLLDMGTEWKPTDEDEEVYEGRDRKT 670 (726)
T ss_pred -----CCCC-------------------------C------cCCCCccccHHHHHHhcCCceeeecCCCCCceeeccCCC
Confidence 1121 1 158999999999999941 0
Q ss_pred C---c--ccccccccCCChhhHHHHHHHHhhC--HHHHHHHHHHHHHHhhcCCC
Q 023510 199 G---L--LQSDQELFSTPGADTAAIVNNFGRN--QTAFFENFVTSMIRMGNLKP 245 (281)
Q Consensus 199 g---l--L~SD~~L~~d~~~~t~~~V~~yA~~--~~~F~~dFa~Am~Km~~lgv 245 (281)
| + +.+|..|..|+ +.|++|+.||.| ++.|++||++||.||++++-
T Consensus 671 g~~~~~~t~~Dlvfgsds--~lRa~aEvYA~dd~~~kF~~DF~~Aw~Kvmeldr 722 (726)
T PRK15061 671 GEVKWTATRVDLVFGSNS--QLRALAEVYASDDAKEKFVRDFVAAWTKVMNLDR 722 (726)
T ss_pred cceeeccChhheecccCH--HHHHHHHHHhcccchhHHHHHHHHHHHHHHhCCC
Confidence 1 1 47899999999 999999999999 99999999999999999984
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.97 E-value=6.5e-30 Score=245.34 Aligned_cols=213 Identities=21% Similarity=0.305 Sum_probs=177.0
Q ss_pred CCccccccCCCCCchhhHHHHHHHHHHHHhhCCCcccHHHHHHHhhhhhhhhcCCCceeecCCCCCCCccccc-------
Q 023510 17 TIVSEKFAAPNNNSARGFEVVDDMKAAVERACPGVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRT------- 89 (281)
Q Consensus 17 ~~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VS~ADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~------- 89 (281)
+|.++..||.|.++.+++.+|++||+++ +..||+||+|+||+.+|++.+|++.|.|..||.|-..+...
T Consensus 124 RFaPlnSWPDN~nLDKarRLLWPIKkKY----G~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~ 199 (730)
T COG0376 124 RFAPLNSWPDNANLDKARRLLWPIKKKY----GRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEK 199 (730)
T ss_pred ecccccCCCcccchHHHHHHhhhHhHhh----cccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccc
Confidence 3568999999999899999999999986 66899999999999999999999999999999998887650
Q ss_pred ------------------------------cccCCCCCCCCCHHHHHHHHHHcCCCCchhhhhhh-cccccccccccccc
Q 023510 90 ------------------------------LANENLPGPNNSLERLKDRFRNVGLNDNFDLVALS-GAHTFGRAQCRTFS 138 (281)
Q Consensus 90 ------------------------------~~~~~lP~p~~~~~~l~~~F~~~Gl~~~~e~VaLs-GaHtiG~~hc~~f~ 138 (281)
+.+...|+|..+..+++..|+||+|+++ |+|||+ ||||+|++|...-.
T Consensus 200 ~wl~d~Ry~~~~~Le~PlaavqMGLIYVNPEGpng~PDpl~aA~dIRetFaRMaMNDe-ETVALiaGGHtfGKtHGag~a 278 (730)
T COG0376 200 TWLGDERYSGDRDLENPLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDE-ETVALIAGGHTFGKTHGAGPA 278 (730)
T ss_pred cccccccccccccccCchhhheeeeEEeCCCCCCCCCChhhhHHHHHHHHHHhcCCcH-hhhhhhhcccccccccCCCch
Confidence 1234579999999999999999999999 999998 79999999986533
Q ss_pred cccccCCCCCCCCCCCCHHHHHHH--HhhCCCCCC-CCcccc---cCCCCCcccChHHHHHHhhcc--------------
Q 023510 139 DRLFNFNSTGNPDPTLNTTLLQQL--RQLCPQGGN-GSVLTN---LDVTTPDVFDNKYFFNLQIHK-------------- 198 (281)
Q Consensus 139 ~Rl~~f~g~~~~dp~~d~~~~~~L--~~~Cp~~~~-~~~~~~---ld~~tp~~FDN~Yy~~l~~~~-------------- 198 (281)
+.+ +++|.-.+--.+.| .+.|..+.+ +..+.. .+..+|++|||.||.+|+...
T Consensus 279 ~~v-------g~ePe~a~ie~qGlGW~~~~g~G~G~dtitsGlE~~Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~ 351 (730)
T COG0376 279 SNV-------GPEPEAAPIEQQGLGWANTYGSGKGPDTITSGLEGAWTTTPTQWSNEFFENLFNYEWELTKSPAGAWQWD 351 (730)
T ss_pred hhc-------CCCccccchhhhccccccccCCCcCcccccccccccCCCCcchhhhHHHHHHhccceeeecCCCcccccc
Confidence 332 36777666666655 344544322 222222 355799999999999998531
Q ss_pred ---------------------CcccccccccCCChhhHHHHHHHHhhCHHHHHHHHHHHHHHhhcC
Q 023510 199 ---------------------GLLQSDQELFSTPGADTAAIVNNFGRNQTAFFENFVTSMIRMGNL 243 (281)
Q Consensus 199 ---------------------glL~SD~~L~~d~~~~t~~~V~~yA~~~~~F~~dFa~Am~Km~~l 243 (281)
.||.+|.+|..|| .++.+.++|.+||+.|.+.|++||.||.+-
T Consensus 352 ~k~~~~~~~pd~~dp~~~~~p~MlttDlaLr~DP--~Y~kIs~rf~e~pd~F~~~FArAWfKLtHR 415 (730)
T COG0376 352 AKSAAAETIPDAHDPSKKHGPMMLTTDLALRFDP--EYEKISRRFLEDPDEFADAFARAWFKLTHR 415 (730)
T ss_pred ccCccccCCCCCCCcccccCceeeccchhhhcCh--HHHHHHHHHHhCHHHHHHHHHHHHHHHhhc
Confidence 4799999999999 999999999999999999999999999873
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.45 E-value=3.4e-13 Score=130.79 Aligned_cols=191 Identities=20% Similarity=0.302 Sum_probs=134.8
Q ss_pred CcccceeeccCCCCCccccccCCCCC--chhhHHHHHHHHHHHHhhCCCcccHHHHHHHhhhhhhhhc---CCCc--eee
Q 023510 4 QGCDASILLDNTTTIVSEKFAAPNNN--SARGFEVVDDMKAAVERACPGVVSCADILTIAAEQSVALS---GGPS--WTN 76 (281)
Q Consensus 4 ~GcDaSill~~~~~~~~E~~~~~N~~--~~~g~~~i~~iK~~le~~cp~~VS~ADilalAa~~av~~~---GGP~--~~v 76 (281)
+|.+|.-| +..+.++|+.|.. +.+.+.+++.|++.+.+ .||.||+|+|++..+||.+ .|-. +||
T Consensus 486 GGaNGaRi-----rLaPqkdWevN~P~~l~kvl~~le~iq~~fnk----kvSlADlIVL~G~a~ie~AAk~aG~~v~VPF 556 (730)
T COG0376 486 GGANGARI-----RLAPQKDWEVNQPAELAKVLAVLEKIQKEFNK----KVSLADLIVLGGNAAVEKAAKAAGFSVTVPF 556 (730)
T ss_pred CCcCcceE-----eecccccCCCCCHHHHHHHHHHHHHHHHHhcC----ccchhHheeecchHHHHHHHHhcCceeeecc
Confidence 56776644 2237999999974 24678888988888763 6999999999999999975 5644 567
Q ss_pred cCCCCCCCccccccccCCC--CC------------CCCCHHHHHHHHHHcCCCCchhhhhhhccc-cccccccccccccc
Q 023510 77 LLGRRDSRTANRTLANENL--PG------------PNNSLERLKDRFRNVGLNDNFDLVALSGAH-TFGRAQCRTFSDRL 141 (281)
Q Consensus 77 ~~GR~D~~~s~~~~~~~~l--P~------------p~~~~~~l~~~F~~~Gl~~~~e~VaLsGaH-tiG~~hc~~f~~Rl 141 (281)
.+||.|+.+.........+ |. ....-.-|++.-+.++|+.. ||++|+||- .+|.-
T Consensus 557 ~pGR~DA~qeqtDv~sf~~LeP~aDGfRNy~~~~~~~~pe~~LvDkAqlL~Ltap-emtVLiGGlRvLg~n--------- 626 (730)
T COG0376 557 APGRTDASQEQTDVESFAVLEPIADGFRNYVKKDYVLTPEELLVDKAQLLTLTAP-EMTVLIGGLRVLGAN--------- 626 (730)
T ss_pred CCCCcccchhhcchhhhhcccccchhhhhhccCCCcCCHHHHHHHHHHHhccCCc-cceEEEcceEeeccC---------
Confidence 8999999877543211111 11 11224556688888999999 999999874 33332
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHhhCCCCCCCCcccccCCCCCcccChHHHHHHhhc----------c----------Cc-
Q 023510 142 FNFNSTGNPDPTLNTTLLQQLRQLCPQGGNGSVLTNLDVTTPDVFDNKYFFNLQIH----------K----------GL- 200 (281)
Q Consensus 142 ~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~ld~~tp~~FDN~Yy~~l~~~----------~----------gl- 200 (281)
|.|+ ...+.- ..|..+.|.||.||+.- + |-
T Consensus 627 --~g~s-------------------------~~GVfT--~~pg~LtndFFvnLlDM~~~W~~~~~~~~~feg~DrktG~~ 677 (730)
T COG0376 627 --YGGS-------------------------KHGVFT--DRPGVLTNDFFVNLLDMGTEWKPTDDARGLFEGRDRKTGEV 677 (730)
T ss_pred --CCCC-------------------------ccceec--cCcccccchhhhhhhhccceeeeccccccceeccccccCce
Confidence 2221 111222 36888889999999842 1 21
Q ss_pred ----ccccccccCCChhhHHHHHHHHhhC--HHHHHHHHHHHHHHhhcCC
Q 023510 201 ----LQSDQELFSTPGADTAAIVNNFGRN--QTAFFENFVTSMIRMGNLK 244 (281)
Q Consensus 201 ----L~SD~~L~~d~~~~t~~~V~~yA~~--~~~F~~dFa~Am~Km~~lg 244 (281)
-..|..+-.++ ..|.+.+.||++ ++.|.+||..||.|..++.
T Consensus 678 kwt~trvDLvfGsns--~LRA~aEVYa~dda~ekFv~DFvaaw~kVMn~D 725 (730)
T COG0376 678 KWTATRVDLVFGSNS--ELRALAEVYASDDAKEKFVKDFVAAWTKVMNLD 725 (730)
T ss_pred EeeeeEEeEEecCcH--HHHHHHHHHhccchHHHHHHHHHHHHHHHhccc
Confidence 23555555667 899999999995 8999999999999999875
No 19
>PTZ00411 transaldolase-like protein; Provisional
Probab=79.36 E-value=22 Score=33.91 Aligned_cols=59 Identities=14% Similarity=0.232 Sum_probs=35.4
Q ss_pred cCCCceeecCCCCCCCccccccccCCCCCC---CCCHHHHHHHHHHcCCCCch---------hhhhhhccc
Q 023510 69 SGGPSWTNLLGRRDSRTANRTLANENLPGP---NNSLERLKDRFRNVGLNDNF---------DLVALSGAH 127 (281)
Q Consensus 69 ~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p---~~~~~~l~~~F~~~Gl~~~~---------e~VaLsGaH 127 (281)
+|-..+..+.||-+.+.-.+.......+.. -.++.++..+|++.|+..++ |+..|.|+|
T Consensus 180 AGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~~qi~~laG~D 250 (333)
T PTZ00411 180 AGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKTIVMGASFRNTGEILELAGCD 250 (333)
T ss_pred cCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCeEEEecccCCHHHHHHHHCCC
Confidence 487889999999966432221111111111 23578888899998886541 555566655
No 20
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=71.08 E-value=4.1 Score=30.80 Aligned_cols=31 Identities=16% Similarity=0.195 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCccccccccccCC
Q 023510 229 FFENFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGN 263 (281)
Q Consensus 229 F~~dFa~Am~Km~~lgv~tg~~GeiR~~C~~~n~~ 263 (281)
....|..||.||+.||-... ---+||.|-..
T Consensus 3 m~~~F~~am~KlavLG~d~~----~LiDCSdVIP~ 33 (80)
T PF11895_consen 3 MQSAFKAAMAKLAVLGHDRS----DLIDCSDVIPV 33 (80)
T ss_dssp HHHHHHHHHHHHCTTTS-GG----GSEE-GGGS--
T ss_pred HHHHHHHHHHHHHHhcCChh----hcccchhhccC
Confidence 46789999999999996322 25599998843
No 21
>PRK05269 transaldolase B; Provisional
Probab=69.43 E-value=45 Score=31.65 Aligned_cols=49 Identities=16% Similarity=0.156 Sum_probs=30.7
Q ss_pred cCCCceeecCCCCCCCccccccccCCCC---CCCCCHHHHHHHHHHcCCCCc
Q 023510 69 SGGPSWTNLLGRRDSRTANRTLANENLP---GPNNSLERLKDRFRNVGLNDN 117 (281)
Q Consensus 69 ~GGP~~~v~~GR~D~~~s~~~~~~~~lP---~p~~~~~~l~~~F~~~Gl~~~ 117 (281)
+|...+..+.||-|...-...+....-+ .+-..+.++..+|++.|+..+
T Consensus 170 AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~t~ 221 (318)
T PRK05269 170 AGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKHGYKTV 221 (318)
T ss_pred cCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHHcCCCce
Confidence 4888899999999865221110000001 123458888899999998766
No 22
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=68.56 E-value=74 Score=31.06 Aligned_cols=65 Identities=18% Similarity=0.343 Sum_probs=37.6
Q ss_pred ccHHHHHHHhhhhhhh--hcCCCceeecCCCCCCCccccccccCCCCCCC----CCHHHHHHHHHHcCCCCc
Q 023510 52 VSCADILTIAAEQSVA--LSGGPSWTNLLGRRDSRTANRTLANENLPGPN----NSLERLKDRFRNVGLNDN 117 (281)
Q Consensus 52 VS~ADilalAa~~av~--~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~----~~~~~l~~~F~~~Gl~~~ 117 (281)
|.|-=.+.+....|+. .+|-..+..+.||.+.+....... ..+|... ..+.++..+|++.|+..+
T Consensus 155 I~~n~TlvFS~~QA~aaaeAGa~~ISPfVgRi~dw~~~~~g~-~~~~~~~dpGv~~v~~i~~~~~~~~~~T~ 225 (391)
T PRK12309 155 IHCNLTLLFGFHQAIACAEAGVTLISPFVGRILDWYKKETGR-DSYPGAEDPGVQSVTQIYNYYKKFGYKTE 225 (391)
T ss_pred CceeeeeecCHHHHHHHHHcCCCEEEeecchhhhhhhhccCC-CccccccchHHHHHHHHHHHHHhcCCCcE
Confidence 4443333444443333 248888999999988743321111 1133222 247888889999888665
No 23
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=67.18 E-value=69 Score=30.41 Aligned_cols=50 Identities=12% Similarity=0.053 Sum_probs=31.0
Q ss_pred hcCCCceeecCCCCCCCccccccccCCCC---CCCCCHHHHHHHHHHcCCCCc
Q 023510 68 LSGGPSWTNLLGRRDSRTANRTLANENLP---GPNNSLERLKDRFRNVGLNDN 117 (281)
Q Consensus 68 ~~GGP~~~v~~GR~D~~~s~~~~~~~~lP---~p~~~~~~l~~~F~~~Gl~~~ 117 (281)
.+|-..+..+.||-+-+.-.........+ ++-..+.++..+|++.|+..+
T Consensus 167 ~AGa~~ISPFVgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~k~~g~~T~ 219 (317)
T TIGR00874 167 EAKVTLISPFVGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYYKKHGYPTE 219 (317)
T ss_pred HcCCCEEEeecchHhHhhhhccCccccccccCchHHHHHHHHHHHHHcCCCcE
Confidence 34888899999999764222110000011 123467888899999998765
No 24
>PRK12346 transaldolase A; Provisional
Probab=56.60 E-value=11 Score=35.61 Aligned_cols=75 Identities=17% Similarity=0.218 Sum_probs=43.6
Q ss_pred ccHHHHHHHhhhhhhh--hcCCCceeecCCCCCCCccccccccCCC-CC---CCCCHHHHHHHHHHcCCCCch-------
Q 023510 52 VSCADILTIAAEQSVA--LSGGPSWTNLLGRRDSRTANRTLANENL-PG---PNNSLERLKDRFRNVGLNDNF------- 118 (281)
Q Consensus 52 VS~ADilalAa~~av~--~~GGP~~~v~~GR~D~~~s~~~~~~~~l-P~---p~~~~~~l~~~F~~~Gl~~~~------- 118 (281)
|+|-=.+.+....|+. .+|-..+..+.||-|......... ..+ +. +-..+.++..+|++.|+..++
T Consensus 150 I~~n~TliFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~-~~~~~~~~~Gv~~v~~i~~~~k~~~~~T~Vm~ASfRn 228 (316)
T PRK12346 150 INCNLTLLFSFAQARACAEAGVFLISPFVGRIYDWYQARKPM-DPYVVEEDPGVKSVRNIYDYYKQHRYETIVMGASFRR 228 (316)
T ss_pred CceeEEEecCHHHHHHHHHcCCCEEEecccHHHHhhhhcccc-ccccccCCChHHHHHHHHHHHHHcCCCcEEEecccCC
Confidence 4444444444444443 358888999999998753221100 011 11 124578888999999987651
Q ss_pred --hhhhhhccc
Q 023510 119 --DLVALSGAH 127 (281)
Q Consensus 119 --e~VaLsGaH 127 (281)
|+.+|.|+|
T Consensus 229 ~~qi~alaG~d 239 (316)
T PRK12346 229 TEQILALAGCD 239 (316)
T ss_pred HHHHHHHhCCC
Confidence 555555654
No 25
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=43.50 E-value=18 Score=34.32 Aligned_cols=65 Identities=15% Similarity=0.240 Sum_probs=37.2
Q ss_pred ccHHHHHHHhhhhhhh--hcCCCceeecCCCCCCCccccccccCCCCC----CCCCHHHHHHHHHHcCCCCc
Q 023510 52 VSCADILTIAAEQSVA--LSGGPSWTNLLGRRDSRTANRTLANENLPG----PNNSLERLKDRFRNVGLNDN 117 (281)
Q Consensus 52 VS~ADilalAa~~av~--~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~----p~~~~~~l~~~F~~~Gl~~~ 117 (281)
|+|-=.+.+....|+. .+|-..+..+.||-|-..-...... ..+. +-..+.++..+|++.|+..+
T Consensus 149 I~vn~TlvFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~-~~~~~~d~Gv~~v~~i~~~~~~~~~~T~ 219 (313)
T cd00957 149 IHCNLTLLFSFAQAVACAEAGVTLISPFVGRILDWYKKHSGDK-AYTAEEDPGVASVKKIYNYYKKFGYKTK 219 (313)
T ss_pred CceeeeeecCHHHHHHHHHcCCCEEEeecchHHHhhhhccccc-cCCccCCcHHHHHHHHHHHHHHcCCCcE
Confidence 4444444444444433 2477889999999986522111000 0111 12357888899999998766
No 26
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=38.32 E-value=30 Score=31.56 Aligned_cols=66 Identities=11% Similarity=-0.037 Sum_probs=35.7
Q ss_pred ccHHHHHHHhhhhhhh--hcCCCceeecCCCCCCCccccccccCCCCCCCC---CHHHHHHHHHHcCCCCc
Q 023510 52 VSCADILTIAAEQSVA--LSGGPSWTNLLGRRDSRTANRTLANENLPGPNN---SLERLKDRFRNVGLNDN 117 (281)
Q Consensus 52 VS~ADilalAa~~av~--~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~---~~~~l~~~F~~~Gl~~~ 117 (281)
|++-=.+.+....|+. .+|...+..++||.|...-........=|.... .+.++.+.|+..|...+
T Consensus 140 I~vn~T~vfs~~Qa~~aa~Aga~~ispfvgRid~~~~~~~~~~~~d~~~~~gi~~~~~~~~~~~~~~~~tk 210 (252)
T cd00439 140 ISVNVTLIFSIAQYEAVADAGTSVASPFVSRIDTLMDKMLEQIGLDLRGKAGVAQVTLAYKLYKQKFKKQR 210 (252)
T ss_pred CceeeeeecCHHHHHHHHHcCCCEEEEeccHHHHHhhhhccccccccccCcHHHHHHHHHHHHHHhCCCCe
Confidence 3333333444444333 347788899999999765532221110011112 35577778878787766
No 27
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=26.76 E-value=39 Score=30.11 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=27.9
Q ss_pred cCCCceeecCCCCCCCccccccccCCCCCCCCCHHHHHHHHHHcCCCCc
Q 023510 69 SGGPSWTNLLGRRDSRTANRTLANENLPGPNNSLERLKDRFRNVGLNDN 117 (281)
Q Consensus 69 ~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~ 117 (281)
+|.-++..+.||.|..-- ++..-+.++...++..|+..+
T Consensus 121 aGa~yispyvgRi~d~g~----------dg~~~v~~~~~~~~~~~~~tk 159 (213)
T TIGR00875 121 AGATYVSPFVGRLDDIGG----------DGMKLIEEVKTIFENHAPDTE 159 (213)
T ss_pred cCCCEEEeecchHHHcCC----------CHHHHHHHHHHHHHHcCCCCE
Confidence 366678899999876421 123446788888888888876
No 28
>PRK01362 putative translaldolase; Provisional
Probab=23.35 E-value=72 Score=28.43 Aligned_cols=39 Identities=18% Similarity=0.393 Sum_probs=27.7
Q ss_pred cCCCceeecCCCCCCCccccccccCCCCCCCCCHHHHHHHHHHcCCCCc
Q 023510 69 SGGPSWTNLLGRRDSRTANRTLANENLPGPNNSLERLKDRFRNVGLNDN 117 (281)
Q Consensus 69 ~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~ 117 (281)
+|.-++..+.||.|-..- ++..-+.++.+.++..|+..+
T Consensus 121 aGa~yispyvgRi~d~g~----------dg~~~i~~~~~~~~~~~~~tk 159 (214)
T PRK01362 121 AGATYVSPFVGRLDDIGT----------DGMELIEDIREIYDNYGFDTE 159 (214)
T ss_pred cCCcEEEeecchHhhcCC----------CHHHHHHHHHHHHHHcCCCcE
Confidence 366677999999976421 123457788888988888766
Done!