Query 023511
Match_columns 281
No_of_seqs 173 out of 1359
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 04:35:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023511.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023511hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0332 FabH 3-oxoacyl-[acyl-c 100.0 1.9E-54 4E-59 388.1 22.1 269 3-279 2-281 (323)
2 PLN02577 hydroxymethylglutaryl 100.0 3.7E-50 8E-55 376.8 23.7 267 1-267 1-267 (459)
3 TIGR01833 HMG-CoA-S_euk 3-hydr 100.0 9.9E-47 2.1E-51 353.3 24.7 267 4-270 1-272 (454)
4 PRK05963 3-oxoacyl-(acyl carri 100.0 1.3E-45 2.8E-50 336.5 22.1 267 4-279 3-285 (326)
5 PRK12880 3-oxoacyl-(acyl carri 100.0 3.1E-45 6.7E-50 337.0 22.7 268 2-279 5-301 (353)
6 COG3425 PksG 3-hydroxy-3-methy 100.0 2.1E-44 4.5E-49 324.5 19.6 260 3-273 1-261 (377)
7 PRK07204 3-oxoacyl-(acyl carri 100.0 4.2E-43 9.2E-48 320.3 23.6 272 1-279 1-288 (329)
8 PRK12879 3-oxoacyl-(acyl carri 100.0 2.6E-42 5.6E-47 314.4 23.1 271 1-279 1-283 (325)
9 PRK04262 hypothetical protein; 100.0 2.9E-42 6.3E-47 317.1 21.8 264 3-279 1-269 (347)
10 CHL00203 fabH 3-oxoacyl-acyl-c 100.0 7.5E-42 1.6E-46 311.9 23.4 268 3-279 1-284 (326)
11 PLN02326 3-oxoacyl-[acyl-carri 100.0 7.1E-42 1.5E-46 317.9 23.6 268 3-279 46-338 (379)
12 TIGR00748 HMG_CoA_syn_Arc hydr 100.0 1.4E-41 3E-46 312.2 23.3 263 4-279 1-268 (345)
13 TIGR01835 HMG-CoA-S_prok 3-hyd 100.0 1.3E-41 2.7E-46 315.9 21.1 246 5-264 1-252 (379)
14 PRK06840 hypothetical protein; 100.0 4.5E-41 9.7E-46 308.2 22.9 270 1-279 1-294 (339)
15 cd00830 KAS_III Ketoacyl-acyl 100.0 4.4E-40 9.6E-45 298.8 21.3 268 4-279 1-281 (320)
16 PRK09258 3-oxoacyl-(acyl carri 100.0 1.2E-39 2.5E-44 298.7 22.2 264 3-279 4-297 (338)
17 TIGR00747 fabH 3-oxoacyl-(acyl 100.0 2.1E-39 4.5E-44 294.6 23.4 269 3-279 1-277 (318)
18 PLN03169 chalcone synthase fam 100.0 3.1E-39 6.7E-44 300.7 20.4 263 3-279 20-344 (391)
19 cd00831 CHS_like Chalcone and 100.0 1.3E-38 2.7E-43 294.4 19.4 263 5-279 2-322 (361)
20 PRK09352 3-oxoacyl-(acyl carri 100.0 6E-38 1.3E-42 285.0 22.8 269 3-279 2-277 (319)
21 PRK06816 3-oxoacyl-(acyl carri 100.0 2.5E-38 5.4E-43 294.0 19.4 268 3-279 1-335 (378)
22 PLN03171 chalcone synthase-lik 100.0 3.3E-37 7.2E-42 287.6 20.8 261 4-279 22-348 (399)
23 PLN03172 chalcone synthase fam 100.0 2.5E-36 5.3E-41 280.8 20.5 263 4-279 16-338 (393)
24 PLN03168 chalcone synthase; Pr 100.0 2.6E-36 5.6E-41 280.7 20.4 266 4-279 15-337 (389)
25 PRK07515 3-oxoacyl-(acyl carri 100.0 6.9E-36 1.5E-40 277.2 21.0 262 4-279 2-332 (372)
26 PLN03173 chalcone synthase; Pr 100.0 5.5E-36 1.2E-40 278.3 18.6 262 4-279 16-338 (391)
27 cd00827 init_cond_enzymes "ini 100.0 2.6E-35 5.6E-40 268.0 22.1 262 4-279 1-285 (324)
28 PLN03170 chalcone synthase; Pr 100.0 1.8E-35 3.9E-40 275.9 17.8 264 4-279 20-342 (401)
29 PLN02377 3-ketoacyl-CoA syntha 100.0 1.9E-34 4E-39 272.9 21.1 270 1-279 94-436 (502)
30 KOG1393 Hydroxymethylglutaryl- 100.0 5.3E-34 1.2E-38 252.9 22.2 271 2-272 9-281 (462)
31 PLN02932 3-ketoacyl-CoA syntha 100.0 6.2E-34 1.3E-38 268.0 20.7 269 1-279 64-412 (478)
32 PLN02854 3-ketoacyl-CoA syntha 100.0 2.5E-33 5.3E-38 265.5 21.5 270 1-279 110-452 (521)
33 PF01154 HMG_CoA_synt_N: Hydro 100.0 6.2E-34 1.3E-38 232.3 12.3 174 1-174 1-174 (174)
34 PLN02192 3-ketoacyl-CoA syntha 100.0 4.8E-32 1E-36 256.1 17.4 260 1-279 98-440 (511)
35 COG3424 BcsA Predicted naringe 100.0 7.3E-32 1.6E-36 234.2 15.0 261 5-279 2-312 (356)
36 PLN00415 3-ketoacyl-CoA syntha 100.0 2E-29 4.4E-34 235.1 18.6 271 1-279 56-398 (466)
37 PF00195 Chal_sti_synt_N: Chal 99.9 2.3E-26 5E-31 196.9 11.0 166 3-173 13-226 (226)
38 cd00327 cond_enzymes Condensin 99.9 4.2E-24 9.1E-29 187.5 14.3 192 52-278 6-207 (254)
39 PF08392 FAE1_CUT1_RppA: FAE1/ 99.9 4E-22 8.7E-27 175.3 15.1 168 1-174 5-208 (290)
40 cd00825 decarbox_cond_enzymes 99.9 2E-21 4.4E-26 177.0 13.7 201 53-279 11-268 (332)
41 TIGR02845 spore_V_AD stage V s 99.8 3.5E-19 7.6E-24 158.7 17.9 224 3-265 8-249 (327)
42 PRK06147 3-oxoacyl-(acyl carri 99.8 3.8E-18 8.2E-23 157.1 17.5 229 1-255 1-268 (348)
43 PRK08304 stage V sporulation p 99.8 3.8E-17 8.2E-22 146.1 17.5 224 3-265 14-255 (337)
44 cd00834 KAS_I_II Beta-ketoacyl 99.6 1.4E-14 3E-19 135.8 17.9 226 3-255 1-309 (406)
45 PF08545 ACP_syn_III: 3-Oxoacy 99.6 8.3E-16 1.8E-20 111.8 3.9 73 111-185 1-79 (80)
46 cd00829 SCP-x_thiolase Thiolas 99.6 6.3E-14 1.4E-18 130.3 15.2 96 50-150 13-108 (375)
47 PRK12404 stage V sporulation p 99.5 4E-13 8.6E-18 119.8 16.8 224 3-265 12-253 (334)
48 PRK06064 acetyl-CoA acetyltran 99.5 2.6E-13 5.6E-18 126.9 16.1 96 49-149 18-115 (389)
49 smart00825 PKS_KS Beta-ketoacy 99.5 8.5E-14 1.8E-18 131.3 11.7 115 53-173 87-246 (424)
50 PRK06501 3-oxoacyl-(acyl carri 99.5 1.2E-12 2.5E-17 123.8 17.0 226 3-255 11-323 (425)
51 PRK06158 thiolase; Provisional 99.5 1.3E-12 2.9E-17 121.8 16.2 101 36-146 12-112 (384)
52 cd00751 thiolase Thiolase are 99.5 1.7E-13 3.6E-18 128.0 10.1 98 49-150 18-115 (386)
53 TIGR01930 AcCoA-C-Actrans acet 99.4 4E-13 8.7E-18 125.4 10.3 97 50-150 18-114 (386)
54 cd00828 elong_cond_enzymes "el 99.4 6.7E-12 1.5E-16 117.9 16.9 117 51-173 70-242 (407)
55 PRK12578 acetyl-CoA acetyltran 99.4 1.2E-12 2.5E-17 122.3 11.3 108 37-150 6-113 (385)
56 PRK05656 acetyl-CoA acetyltran 99.4 1E-12 2.2E-17 122.9 10.4 98 50-151 23-120 (393)
57 PRK07108 acetyl-CoA acetyltran 99.4 1.7E-12 3.6E-17 121.4 10.0 99 49-151 23-122 (392)
58 PRK09051 beta-ketothiolase; Pr 99.4 2E-12 4.2E-17 121.0 10.4 97 49-150 23-121 (394)
59 cd00833 PKS polyketide synthas 99.4 1.7E-12 3.7E-17 122.2 10.0 115 53-173 87-246 (421)
60 PRK08313 acetyl-CoA acetyltran 99.4 2.2E-12 4.8E-17 120.4 10.3 107 37-149 8-116 (386)
61 PRK06205 acetyl-CoA acetyltran 99.4 1.9E-12 4.1E-17 121.5 9.8 97 50-150 23-119 (404)
62 PRK09052 acetyl-CoA acetyltran 99.4 3.1E-12 6.7E-17 119.8 10.9 97 50-150 28-126 (399)
63 PRK08235 acetyl-CoA acetyltran 99.4 2.6E-12 5.6E-17 120.2 10.3 97 50-150 23-119 (393)
64 TIGR03150 fabF beta-ketoacyl-a 99.3 1E-10 2.2E-15 109.8 19.8 164 3-173 1-242 (407)
65 PRK08242 acetyl-CoA acetyltran 99.3 5.7E-12 1.2E-16 117.9 10.5 97 50-150 25-122 (402)
66 PRK06059 lipid-transfer protei 99.3 7.9E-12 1.7E-16 117.3 10.9 96 50-150 20-116 (399)
67 cd00826 nondecarbox_cond_enzym 99.3 8.8E-12 1.9E-16 116.6 10.8 97 50-150 20-116 (393)
68 PRK05790 putative acyltransfer 99.3 1.2E-11 2.7E-16 115.7 11.2 96 50-150 23-119 (393)
69 PRK08170 acetyl-CoA acetyltran 99.3 1.7E-11 3.7E-16 115.9 10.7 97 50-150 24-120 (426)
70 PRK06289 acetyl-CoA acetyltran 99.3 1.4E-11 3.1E-16 115.7 10.0 95 49-150 22-121 (403)
71 PRK06954 acetyl-CoA acetyltran 99.3 2.1E-11 4.5E-16 114.3 11.0 96 50-150 28-124 (397)
72 PRK06065 acetyl-CoA acetyltran 99.3 3.1E-11 6.8E-16 112.8 10.8 107 36-149 13-121 (392)
73 PRK07314 3-oxoacyl-(acyl carri 99.2 5E-10 1.1E-14 105.4 18.1 226 3-256 2-311 (411)
74 PRK06445 acetyl-CoA acetyltran 99.2 4.2E-11 9.1E-16 112.2 9.7 98 50-150 29-126 (394)
75 PRK07516 acetyl-CoA acetyltran 99.2 8.8E-11 1.9E-15 109.8 11.8 108 37-150 7-116 (389)
76 PF00108 Thiolase_N: Thiolase, 99.2 7.8E-11 1.7E-15 104.6 10.6 99 49-151 22-120 (264)
77 PRK07103 polyketide beta-ketoa 99.2 2.5E-10 5.5E-15 107.5 14.4 175 53-255 80-315 (410)
78 PRK06333 3-oxoacyl-(acyl carri 99.2 9.8E-10 2.1E-14 103.9 17.5 114 53-172 82-254 (424)
79 PRK09185 3-oxoacyl-(acyl carri 99.2 1.6E-09 3.6E-14 101.4 17.1 134 91-254 138-293 (392)
80 PRK08722 3-oxoacyl-(acyl carri 99.2 3.5E-09 7.6E-14 99.9 19.2 164 3-173 4-245 (414)
81 PRK08439 3-oxoacyl-(acyl carri 99.2 4.7E-09 1E-13 98.8 19.9 164 3-173 2-243 (406)
82 PLN02287 3-ketoacyl-CoA thiola 99.2 2.4E-10 5.2E-15 108.5 11.1 98 49-150 67-165 (452)
83 PLN02836 3-oxoacyl-[acyl-carri 99.1 3.9E-09 8.5E-14 100.2 19.0 115 53-173 93-266 (437)
84 PRK07661 acetyl-CoA acetyltran 99.1 2.4E-10 5.2E-15 106.9 10.4 96 50-150 24-121 (391)
85 PRK05952 3-oxoacyl-(acyl carri 99.1 3.6E-09 7.8E-14 98.6 17.8 222 3-255 2-288 (381)
86 PLN02787 3-oxoacyl-[acyl-carri 99.1 3.4E-09 7.4E-14 102.6 17.1 223 3-254 129-438 (540)
87 PRK09116 3-oxoacyl-(acyl carri 99.1 1.4E-08 3E-13 95.5 19.4 162 3-172 2-243 (405)
88 PRK08256 lipid-transfer protei 99.1 7.5E-10 1.6E-14 103.7 10.4 93 50-150 19-111 (391)
89 PRK07851 acetyl-CoA acetyltran 99.1 7.3E-10 1.6E-14 104.2 10.3 96 50-150 24-121 (406)
90 PF00109 ketoacyl-synt: Beta-k 99.1 8.8E-09 1.9E-13 90.4 16.5 113 53-172 87-251 (254)
91 cd00832 CLF Chain-length facto 99.0 9.1E-09 2E-13 96.6 16.9 221 3-254 1-303 (399)
92 PRK06157 acetyl-CoA acetyltran 99.0 2.4E-09 5.2E-14 100.4 11.8 108 37-150 12-119 (398)
93 PTZ00455 3-ketoacyl-CoA thiola 99.0 2.1E-09 4.5E-14 101.8 10.9 99 50-150 45-151 (438)
94 PTZ00050 3-oxoacyl-acyl carrie 99.0 5.6E-09 1.2E-13 98.7 13.8 116 52-173 76-250 (421)
95 PRK08131 acetyl-CoA acetyltran 99.0 3.1E-09 6.7E-14 99.7 10.6 96 50-150 23-120 (401)
96 PRK08963 fadI 3-ketoacyl-CoA t 99.0 2.3E-09 5.1E-14 101.4 9.5 96 50-150 26-122 (428)
97 PRK07850 acetyl-CoA acetyltran 99.0 3.7E-09 7.9E-14 98.8 10.2 97 50-151 23-121 (387)
98 PRK06365 acetyl-CoA acetyltran 99.0 5.2E-09 1.1E-13 99.1 11.3 109 37-150 21-130 (430)
99 PRK06633 acetyl-CoA acetyltran 99.0 2.6E-09 5.6E-14 99.9 8.9 97 50-151 24-121 (392)
100 TIGR02446 FadI fatty oxidation 98.9 3.3E-09 7.1E-14 100.4 9.6 95 50-150 28-124 (430)
101 PRK14691 3-oxoacyl-(acyl carri 98.9 2E-08 4.4E-13 92.3 14.2 177 53-255 4-240 (342)
102 PRK06366 acetyl-CoA acetyltran 98.9 6.5E-09 1.4E-13 97.2 11.1 95 51-150 24-119 (388)
103 PLN02644 acetyl-CoA C-acetyltr 98.9 6.8E-09 1.5E-13 97.3 10.5 97 50-150 22-118 (394)
104 PRK09050 beta-ketoadipyl CoA t 98.9 5.9E-09 1.3E-13 97.8 9.6 97 50-150 23-121 (401)
105 PRK13359 beta-ketoadipyl CoA t 98.9 7.5E-09 1.6E-13 97.0 9.9 97 51-151 24-122 (400)
106 PRK06504 acetyl-CoA acetyltran 98.9 1E-08 2.2E-13 95.9 10.1 97 50-150 23-120 (390)
107 TIGR02430 pcaF beta-ketoadipyl 98.9 9.7E-09 2.1E-13 96.3 9.5 97 50-150 22-120 (400)
108 PRK06519 3-oxoacyl-(acyl carri 98.8 7.2E-08 1.6E-12 90.4 14.5 216 3-254 6-312 (398)
109 PRK08947 fadA 3-ketoacyl-CoA t 98.8 1.7E-08 3.8E-13 94.3 9.1 96 50-150 24-122 (387)
110 PRK07910 3-oxoacyl-(acyl carri 98.8 6.1E-08 1.3E-12 91.6 12.7 223 3-254 12-319 (418)
111 TIGR02445 fadA fatty oxidation 98.8 1.8E-08 4E-13 94.1 8.7 95 50-150 22-120 (385)
112 PRK09268 acetyl-CoA acetyltran 98.8 3.6E-08 7.7E-13 93.3 10.1 97 50-150 28-124 (427)
113 PRK07967 3-oxoacyl-(acyl carri 98.8 3.5E-07 7.5E-12 86.1 15.9 162 3-172 2-242 (406)
114 PRK07801 acetyl-CoA acetyltran 98.7 4.4E-08 9.5E-13 91.5 9.5 96 51-150 24-120 (382)
115 PRK08142 acetyl-CoA acetyltran 98.7 9.5E-08 2.1E-12 89.3 11.0 103 37-149 10-112 (388)
116 PF07451 SpoVAD: Stage V sporu 98.7 1.3E-06 2.8E-11 77.4 16.7 184 53-267 51-252 (329)
117 PF08540 HMG_CoA_synt_C: Hydro 98.7 1.9E-08 4.1E-13 89.5 4.7 92 181-272 7-101 (282)
118 PRK08257 acetyl-CoA acetyltran 98.6 3.8E-07 8.2E-12 87.9 11.8 108 37-150 9-120 (498)
119 PRK06066 acetyl-CoA acetyltran 98.6 3.5E-07 7.5E-12 85.4 10.9 105 37-149 9-115 (385)
120 PRK07855 lipid-transfer protei 98.6 4.8E-07 1E-11 84.6 10.7 100 37-146 9-108 (386)
121 PRK06025 acetyl-CoA acetyltran 98.6 4.5E-07 9.8E-12 85.1 10.3 98 50-151 26-124 (417)
122 PF08541 ACP_syn_III_C: 3-Oxoa 98.5 3.3E-08 7.3E-13 73.1 1.7 49 231-279 1-49 (90)
123 COG0304 FabB 3-oxoacyl-(acyl-c 98.5 2.3E-06 5.1E-11 80.2 14.3 227 2-255 2-310 (412)
124 PRK06690 acetyl-CoA acetyltran 98.4 1.5E-06 3.2E-11 80.5 9.7 91 50-150 22-113 (361)
125 PRK07937 lipid-transfer protei 98.4 1.2E-06 2.6E-11 80.9 8.9 104 37-149 7-113 (352)
126 TIGR02813 omega_3_PfaA polyket 98.4 2E-06 4.3E-11 95.9 11.3 137 93-255 186-349 (2582)
127 COG3321 Polyketide synthase mo 98.3 2.9E-05 6.3E-10 81.1 18.6 175 55-255 93-317 (1061)
128 KOG1406 Peroxisomal 3-ketoacyl 98.2 3.9E-06 8.5E-11 72.9 7.0 110 33-150 7-118 (408)
129 KOG1394 3-oxoacyl-(acyl-carrie 98.1 8.2E-05 1.8E-09 67.3 12.6 224 3-255 24-335 (440)
130 COG0183 PaaJ Acetyl-CoA acetyl 97.8 7.2E-05 1.6E-09 70.1 8.4 94 53-150 27-123 (392)
131 PF02797 Chal_sti_synt_C: Chal 97.7 2.9E-05 6.3E-10 63.1 3.5 50 230-279 49-101 (151)
132 KOG1390 Acetyl-CoA acetyltrans 97.5 0.00027 5.8E-09 63.1 6.1 96 50-150 27-123 (396)
133 KOG1391 Acetyl-CoA acetyltrans 96.9 0.0012 2.7E-08 57.4 4.5 96 50-150 25-122 (396)
134 PF13723 Ketoacyl-synt_2: Beta 96.0 0.17 3.7E-06 43.6 12.4 116 52-174 33-172 (218)
135 KOG1392 Acetyl-CoA acetyltrans 95.7 0.0074 1.6E-07 53.4 2.6 93 52-150 65-159 (465)
136 PRK06025 acetyl-CoA acetyltran 95.6 0.0096 2.1E-07 56.2 3.0 42 230-271 324-365 (417)
137 KOG1389 3-oxoacyl CoA thiolase 95.4 0.048 1E-06 48.9 6.7 96 50-150 58-154 (435)
138 PRK06147 3-oxoacyl-(acyl carri 94.2 0.22 4.7E-06 46.0 8.1 93 55-148 234-331 (348)
139 PF08541 ACP_syn_III_C: 3-Oxoa 94.1 0.08 1.7E-06 38.6 4.0 72 65-147 1-78 (90)
140 KOG1202 Animal-type fatty acid 94.0 0.17 3.7E-06 52.9 7.4 179 53-255 87-310 (2376)
141 PRK06816 3-oxoacyl-(acyl carri 93.7 0.26 5.6E-06 46.0 7.7 89 54-150 271-367 (378)
142 TIGR00748 HMG_CoA_syn_Arc hydr 93.2 0.21 4.6E-06 46.0 6.1 81 53-145 206-293 (345)
143 PRK06205 acetyl-CoA acetyltran 93.0 0.61 1.3E-05 44.0 9.1 59 18-80 265-323 (404)
144 PRK09052 acetyl-CoA acetyltran 91.9 1.8 3.9E-05 40.8 10.6 56 19-79 265-321 (399)
145 PRK08257 acetyl-CoA acetyltran 91.6 1 2.3E-05 43.7 8.9 120 18-145 250-382 (498)
146 cd00825 decarbox_cond_enzymes 91.6 1.2 2.5E-05 40.3 8.8 81 54-134 204-286 (332)
147 PRK08242 acetyl-CoA acetyltran 91.0 1.8 3.9E-05 40.9 9.6 129 18-171 267-401 (402)
148 PRK06690 acetyl-CoA acetyltran 91.0 0.15 3.3E-06 47.4 2.4 42 230-271 267-308 (361)
149 PRK06366 acetyl-CoA acetyltran 91.0 1 2.3E-05 42.2 8.0 113 18-143 252-370 (388)
150 PF02801 Ketoacyl-synt_C: Beta 91.0 0.36 7.9E-06 37.2 4.2 79 55-134 25-110 (119)
151 PRK07661 acetyl-CoA acetyltran 90.7 2.5 5.4E-05 39.7 10.2 80 56-143 290-374 (391)
152 PRK07851 acetyl-CoA acetyltran 90.5 2.1 4.5E-05 40.5 9.6 23 57-79 305-327 (406)
153 cd00327 cond_enzymes Condensin 90.3 3.2 7E-05 35.7 10.1 77 53-134 143-226 (254)
154 PF02803 Thiolase_C: Thiolase, 90.3 2.3 4.9E-05 33.2 8.1 80 56-143 23-107 (123)
155 PRK05656 acetyl-CoA acetyltran 90.1 0.35 7.6E-06 45.4 4.0 42 230-271 300-341 (393)
156 PRK04262 hypothetical protein; 90.0 0.81 1.8E-05 42.1 6.3 80 54-145 208-294 (347)
157 PRK07850 acetyl-CoA acetyltran 90.0 4.3 9.3E-05 38.1 11.2 59 18-81 252-311 (387)
158 CHL00203 fabH 3-oxoacyl-acyl-c 89.9 0.66 1.4E-05 42.2 5.6 82 56-146 227-312 (326)
159 PRK12578 acetyl-CoA acetyltran 89.8 0.91 2E-05 42.4 6.5 37 230-266 266-302 (385)
160 PRK07515 3-oxoacyl-(acyl carri 89.8 0.78 1.7E-05 42.6 6.0 86 53-146 269-358 (372)
161 PRK13359 beta-ketoadipyl CoA t 89.6 1.9 4.1E-05 40.7 8.5 57 18-79 263-320 (400)
162 PRK07937 lipid-transfer protei 89.4 2.8 6.1E-05 38.8 9.3 59 18-81 212-273 (352)
163 PRK06840 hypothetical protein; 89.0 2.9 6.2E-05 38.2 9.1 82 56-146 238-322 (339)
164 PRK09050 beta-ketoadipyl CoA t 88.5 2.9 6.4E-05 39.4 8.9 23 57-79 299-321 (401)
165 PLN02287 3-ketoacyl-CoA thiola 88.4 0.56 1.2E-05 44.9 4.1 42 230-271 340-381 (452)
166 PF02803 Thiolase_C: Thiolase, 88.2 0.45 9.7E-06 37.2 2.7 42 230-271 31-72 (123)
167 cd00751 thiolase Thiolase are 88.0 4.5 9.7E-05 37.8 9.8 26 56-81 286-311 (386)
168 PLN02326 3-oxoacyl-[acyl-carri 87.5 1.1 2.4E-05 41.8 5.5 83 55-146 280-366 (379)
169 TIGR01930 AcCoA-C-Actrans acet 87.4 4 8.6E-05 38.2 9.1 25 57-81 288-312 (386)
170 PRK07204 3-oxoacyl-(acyl carri 87.3 1.7 3.7E-05 39.4 6.5 83 55-146 230-316 (329)
171 PRK09268 acetyl-CoA acetyltran 87.0 1.7 3.7E-05 41.3 6.5 62 18-82 272-336 (427)
172 PRK09258 3-oxoacyl-(acyl carri 87.0 2.6 5.7E-05 38.4 7.5 86 54-147 238-326 (338)
173 PRK05963 3-oxoacyl-(acyl carri 86.1 2.6 5.7E-05 38.2 7.0 85 53-146 225-313 (326)
174 PRK12879 3-oxoacyl-(acyl carri 84.9 3 6.6E-05 37.6 6.8 82 56-146 226-311 (325)
175 TIGR00747 fabH 3-oxoacyl-(acyl 84.7 3.9 8.4E-05 36.8 7.4 85 54-146 218-305 (318)
176 PTZ00455 3-ketoacyl-CoA thiola 84.2 1.2 2.7E-05 42.4 4.1 64 18-82 266-336 (438)
177 PRK05790 putative acyltransfer 83.7 5.7 0.00012 37.2 8.3 57 19-80 259-316 (393)
178 cd00830 KAS_III Ketoacyl-acyl 83.5 3.5 7.5E-05 37.1 6.5 84 54-146 222-309 (320)
179 TIGR02430 pcaF beta-ketoadipyl 83.4 4 8.7E-05 38.5 7.1 23 57-79 298-320 (400)
180 PRK06158 thiolase; Provisional 83.3 1.5 3.3E-05 41.0 4.2 29 55-83 254-282 (384)
181 PRK08142 acetyl-CoA acetyltran 83.2 2 4.2E-05 40.4 4.9 64 18-83 218-283 (388)
182 PRK09352 3-oxoacyl-(acyl carri 82.4 4.5 9.8E-05 36.4 6.9 83 55-146 219-305 (319)
183 PRK06066 acetyl-CoA acetyltran 81.9 1.8 3.8E-05 40.7 4.0 63 18-81 218-284 (385)
184 PRK08313 acetyl-CoA acetyltran 81.3 2.9 6.3E-05 39.1 5.3 65 18-83 216-285 (386)
185 PRK06065 acetyl-CoA acetyltran 81.1 2.6 5.6E-05 39.6 4.9 65 18-83 224-292 (392)
186 PRK07855 lipid-transfer protei 80.7 1.9 4.1E-05 40.5 3.8 64 18-82 223-293 (386)
187 PRK08235 acetyl-CoA acetyltran 80.7 7.2 0.00016 36.7 7.7 80 56-143 292-376 (393)
188 PRK06289 acetyl-CoA acetyltran 80.3 2.1 4.6E-05 40.3 4.1 63 18-81 230-302 (403)
189 PRK14691 3-oxoacyl-(acyl carri 80.2 5.3 0.00011 36.8 6.5 47 54-101 205-252 (342)
190 COG0304 FabB 3-oxoacyl-(acyl-c 79.6 6.2 0.00013 37.4 6.8 77 55-133 276-356 (412)
191 cd00834 KAS_I_II Beta-ketoacyl 79.4 4.3 9.4E-05 37.8 5.8 81 54-136 274-360 (406)
192 cd00831 CHS_like Chalcone and 79.2 7.5 0.00016 35.8 7.3 84 54-146 258-350 (361)
193 cd00828 elong_cond_enzymes "el 79.2 6.5 0.00014 36.8 6.9 80 54-135 273-358 (407)
194 PRK08722 3-oxoacyl-(acyl carri 79.1 8.6 0.00019 36.4 7.7 80 55-135 278-363 (414)
195 COG0332 FabH 3-oxoacyl-[acyl-c 79.0 3.9 8.5E-05 37.4 5.2 30 52-81 220-249 (323)
196 PRK07108 acetyl-CoA acetyltran 79.0 2.1 4.6E-05 40.2 3.6 24 56-79 291-314 (392)
197 PRK07516 acetyl-CoA acetyltran 78.0 3.1 6.6E-05 39.0 4.3 27 55-81 260-286 (389)
198 cd00829 SCP-x_thiolase Thiolas 76.1 4.7 0.0001 37.3 5.0 30 54-83 250-279 (375)
199 PRK09185 3-oxoacyl-(acyl carri 76.1 7 0.00015 36.6 6.2 76 57-135 262-341 (392)
200 KOG1394 3-oxoacyl-(acyl-carrie 75.9 2.4 5.2E-05 39.1 2.8 42 44-86 291-333 (440)
201 TIGR03150 fabF beta-ketoacyl-a 75.8 7.4 0.00016 36.3 6.3 45 56-101 276-321 (407)
202 PRK06064 acetyl-CoA acetyltran 75.4 3.7 8.1E-05 38.4 4.1 63 19-82 220-285 (389)
203 PRK07910 3-oxoacyl-(acyl carri 75.1 18 0.00039 34.2 8.7 45 56-101 287-332 (418)
204 PRK09051 beta-ketothiolase; Pr 73.7 2.7 5.9E-05 39.5 2.7 42 230-271 301-342 (394)
205 PRK06633 acetyl-CoA acetyltran 73.5 4.3 9.3E-05 38.2 4.0 25 55-79 290-314 (392)
206 PRK08963 fadI 3-ketoacyl-CoA t 73.4 4.7 0.0001 38.4 4.3 29 55-83 309-337 (428)
207 PRK05952 3-oxoacyl-(acyl carri 73.0 7.6 0.00017 36.3 5.6 32 54-85 253-285 (381)
208 cd00832 CLF Chain-length facto 73.0 10 0.00022 35.6 6.5 80 54-135 269-352 (399)
209 KOG1389 3-oxoacyl CoA thiolase 73.0 2.9 6.2E-05 37.9 2.5 41 231-271 330-370 (435)
210 PRK06157 acetyl-CoA acetyltran 72.5 6.3 0.00014 37.0 4.9 63 18-81 224-294 (398)
211 PRK08256 lipid-transfer protei 72.0 3.1 6.7E-05 39.0 2.7 37 230-266 273-309 (391)
212 PRK08131 acetyl-CoA acetyltran 71.7 4.9 0.00011 37.9 4.0 58 18-80 263-321 (401)
213 PRK06445 acetyl-CoA acetyltran 71.5 3.6 7.7E-05 38.7 3.0 42 230-271 301-342 (394)
214 PRK06519 3-oxoacyl-(acyl carri 71.5 15 0.00032 34.7 7.1 29 56-85 281-310 (398)
215 PRK06501 3-oxoacyl-(acyl carri 70.9 14 0.0003 35.0 6.9 27 56-82 290-316 (425)
216 PRK07314 3-oxoacyl-(acyl carri 70.5 11 0.00025 35.2 6.2 77 57-135 278-360 (411)
217 cd00833 PKS polyketide synthas 70.3 16 0.00035 34.1 7.1 81 54-135 278-366 (421)
218 PRK07801 acetyl-CoA acetyltran 69.9 3.8 8.1E-05 38.3 2.7 48 230-277 289-338 (382)
219 COG3425 PksG 3-hydroxy-3-methy 69.8 10 0.00022 35.3 5.4 97 52-170 206-307 (377)
220 PRK06954 acetyl-CoA acetyltran 69.4 2.8 6.2E-05 39.4 1.8 42 230-271 304-345 (397)
221 PLN02787 3-oxoacyl-[acyl-carri 69.4 14 0.00031 36.3 6.7 76 57-135 407-488 (540)
222 PRK12880 3-oxoacyl-(acyl carri 68.2 22 0.00047 32.9 7.4 28 54-81 241-268 (353)
223 PRK06504 acetyl-CoA acetyltran 68.1 4.5 9.8E-05 38.0 2.9 42 230-271 297-338 (390)
224 PTZ00050 3-oxoacyl-acyl carrie 68.0 21 0.00045 33.8 7.4 27 55-81 283-310 (421)
225 smart00825 PKS_KS Beta-ketoacy 68.0 16 0.00035 34.2 6.7 32 54-85 278-310 (424)
226 PRK08170 acetyl-CoA acetyltran 67.9 7.3 0.00016 37.0 4.3 25 57-81 309-333 (426)
227 TIGR01835 HMG-CoA-S_prok 3-hyd 67.8 13 0.00029 34.6 6.0 29 54-82 204-232 (379)
228 PRK06333 3-oxoacyl-(acyl carri 67.7 15 0.00032 34.7 6.3 46 55-101 288-334 (424)
229 PRK12404 stage V sporulation p 66.8 15 0.00031 33.7 5.7 39 229-267 64-104 (334)
230 PRK06059 lipid-transfer protei 66.0 6.6 0.00014 36.9 3.6 26 57-82 275-300 (399)
231 TIGR02446 FadI fatty oxidation 66.0 6.2 0.00013 37.6 3.4 24 58-81 314-337 (430)
232 KOG1406 Peroxisomal 3-ketoacyl 65.8 8 0.00017 34.3 3.7 32 53-84 270-301 (408)
233 PLN02836 3-oxoacyl-[acyl-carri 65.1 17 0.00038 34.5 6.3 26 55-80 299-324 (437)
234 PRK09116 3-oxoacyl-(acyl carri 64.5 25 0.00055 33.1 7.2 46 55-101 275-321 (405)
235 KOG1390 Acetyl-CoA acetyltrans 64.4 2.8 6E-05 38.1 0.6 41 230-270 303-343 (396)
236 PRK06365 acetyl-CoA acetyltran 63.7 9.1 0.0002 36.5 4.0 29 55-83 293-323 (430)
237 PF00195 Chal_sti_synt_N: Chal 62.9 11 0.00023 32.7 4.0 54 210-265 93-150 (226)
238 PLN03169 chalcone synthase fam 62.8 46 0.00099 31.2 8.5 81 58-145 284-374 (391)
239 PLN03168 chalcone synthase; Pr 62.3 9.5 0.00021 35.8 3.8 53 210-265 94-151 (389)
240 TIGR01796 CM_mono_aroH monofun 59.1 13 0.00029 28.6 3.4 49 61-115 26-76 (117)
241 PLN03172 chalcone synthase fam 57.8 25 0.00054 33.1 5.8 53 210-265 95-152 (393)
242 cd00827 init_cond_enzymes "ini 55.4 65 0.0014 28.7 8.0 86 52-146 220-313 (324)
243 PF02801 Ketoacyl-synt_C: Beta 54.8 13 0.00027 28.5 2.8 27 230-256 34-60 (119)
244 PLN03170 chalcone synthase; Pr 53.8 26 0.00056 33.1 5.2 54 210-266 99-157 (401)
245 PRK07103 polyketide beta-ketoa 53.5 9.7 0.00021 35.9 2.3 24 57-80 283-306 (410)
246 TIGR02445 fadA fatty oxidation 53.4 12 0.00026 35.0 3.0 42 230-271 289-333 (385)
247 PF07736 CM_1: Chorismate muta 53.2 12 0.00025 29.0 2.3 48 61-114 26-75 (118)
248 cd00826 nondecarbox_cond_enzym 52.7 8.7 0.00019 36.1 1.9 36 230-265 278-313 (393)
249 PLN03173 chalcone synthase; Pr 52.1 28 0.00061 32.7 5.2 53 210-265 95-152 (391)
250 PLN02644 acetyl-CoA C-acetyltr 48.7 12 0.00026 35.1 2.1 42 230-271 300-341 (394)
251 PRK08947 fadA 3-ketoacyl-CoA t 47.8 16 0.00035 34.2 2.9 36 230-265 291-326 (387)
252 PRK09604 UGMP family protein; 47.6 79 0.0017 28.9 7.3 30 53-82 51-80 (332)
253 PF01890 CbiG_C: Cobalamin syn 47.6 28 0.00061 26.9 3.7 39 37-82 4-42 (121)
254 TIGR03285 methan_mark_14 putat 47.3 33 0.00072 31.9 4.6 33 50-82 62-94 (445)
255 PLN03171 chalcone synthase-lik 46.7 39 0.00085 31.8 5.2 53 210-265 101-158 (399)
256 KOG2708 Predicted metalloprote 44.1 47 0.001 29.0 4.8 86 55-150 51-137 (336)
257 PLN02377 3-ketoacyl-CoA syntha 43.2 48 0.001 32.4 5.3 36 229-264 182-221 (502)
258 PRK07027 cobalamin biosynthesi 42.3 39 0.00084 26.3 3.8 40 35-81 4-43 (126)
259 PRK08304 stage V sporulation p 40.5 1.9E+02 0.0041 26.7 8.4 83 58-148 211-311 (337)
260 KOG1794 N-Acetylglucosamine ki 40.1 47 0.001 30.0 4.3 114 49-173 41-165 (336)
261 COG3424 BcsA Predicted naringe 40.0 28 0.0006 31.7 2.9 54 210-266 69-127 (356)
262 PF00814 Peptidase_M22: Glycop 37.5 40 0.00088 29.8 3.6 29 54-82 30-58 (268)
263 TIGR03725 bact_YeaZ universal 37.4 37 0.00081 28.5 3.3 31 52-82 32-62 (202)
264 PF14574 DUF4445: Domain of un 36.7 43 0.00094 31.8 3.8 48 53-104 302-353 (412)
265 cd01452 VWA_26S_proteasome_sub 36.5 1.6E+02 0.0035 24.6 6.9 85 52-147 24-117 (187)
266 TIGR03722 arch_KAE1 universal 36.4 37 0.0008 30.9 3.2 27 56-82 48-74 (322)
267 PRK14878 UGMP family protein; 35.7 37 0.00081 30.9 3.2 27 56-82 47-73 (323)
268 cd02185 AroH Chorismate mutase 35.2 84 0.0018 24.3 4.5 48 61-114 26-75 (117)
269 PRK05788 cobalamin biosynthesi 35.2 51 0.0011 30.1 3.9 42 33-81 193-234 (315)
270 COG0533 QRI7 Metal-dependent p 34.7 54 0.0012 30.2 3.9 27 55-81 52-78 (342)
271 KOG2707 Predicted metalloprote 33.7 43 0.00094 31.0 3.1 30 57-87 86-115 (405)
272 PRK09585 anmK anhydro-N-acetyl 33.3 53 0.0011 30.7 3.7 63 52-115 68-138 (365)
273 TIGR00329 gcp_kae1 metallohydr 33.2 44 0.00095 30.2 3.2 30 53-82 48-77 (305)
274 PF09887 DUF2114: Uncharacteri 32.5 86 0.0019 29.3 4.9 33 50-82 64-97 (448)
275 PLN02192 3-ketoacyl-CoA syntha 32.0 91 0.002 30.5 5.2 36 229-264 186-225 (511)
276 TIGR01991 HscA Fe-S protein as 32.0 1.9E+02 0.0041 28.8 7.7 47 54-102 292-338 (599)
277 PF08392 FAE1_CUT1_RppA: FAE1/ 31.6 99 0.0022 27.9 5.1 38 229-266 93-134 (290)
278 PRK05183 hscA chaperone protei 30.9 2.1E+02 0.0045 28.7 7.8 46 55-102 309-354 (616)
279 TIGR02813 omega_3_PfaA polyket 30.5 1.1E+02 0.0025 36.0 6.4 79 57-136 317-403 (2582)
280 TIGR02845 spore_V_AD stage V s 29.7 96 0.0021 28.5 4.7 37 229-265 60-98 (327)
281 PRK13410 molecular chaperone D 29.4 1.3E+02 0.0028 30.5 6.1 47 53-101 307-353 (668)
282 PLN02932 3-ketoacyl-CoA syntha 27.9 1.1E+02 0.0023 29.8 5.0 36 229-264 158-197 (478)
283 TIGR03723 bact_gcp putative gl 27.6 2.6E+02 0.0057 25.3 7.3 30 53-82 49-78 (314)
284 PTZ00186 heat shock 70 kDa pre 27.4 1.5E+02 0.0033 29.9 6.2 46 55-102 334-379 (657)
285 TIGR02177 PorB_KorB 2-oxoacid: 26.3 2.4E+02 0.0053 25.3 6.7 20 56-75 11-30 (287)
286 PLN02854 3-ketoacyl-CoA syntha 25.9 4.7E+02 0.01 25.7 9.0 25 57-81 387-417 (521)
287 PF05378 Hydant_A_N: Hydantoin 25.7 71 0.0015 26.4 3.0 34 50-83 32-65 (176)
288 cd01462 VWA_YIEM_type VWA YIEM 25.7 2.9E+02 0.0064 21.3 6.6 87 54-148 18-104 (152)
289 PLN03184 chloroplast Hsp70; Pr 25.5 1.4E+02 0.0031 30.2 5.6 47 54-102 345-391 (673)
290 PRK13411 molecular chaperone D 25.5 1E+02 0.0023 31.0 4.6 46 54-101 307-352 (653)
291 PLN00415 3-ketoacyl-CoA syntha 25.1 1.8E+02 0.004 28.1 5.9 36 229-264 144-183 (466)
292 COG1214 Inactive homolog of me 24.9 1.8E+02 0.004 24.9 5.5 32 51-82 35-66 (220)
293 COG4401 AroH Chorismate mutase 24.8 2.1E+02 0.0045 22.0 4.9 59 55-119 18-82 (125)
294 cd01453 vWA_transcription_fact 24.5 3.9E+02 0.0086 21.8 7.7 91 52-148 24-117 (183)
295 COG1908 FrhD Coenzyme F420-red 24.5 93 0.002 24.3 3.1 83 18-104 40-125 (132)
296 PF02662 FlpD: Methyl-viologen 24.3 77 0.0017 24.6 2.7 30 54-83 75-104 (124)
297 PRK00290 dnaK molecular chaper 24.1 1.9E+02 0.004 29.0 6.1 47 54-102 306-352 (627)
298 PF07451 SpoVAD: Stage V sporu 23.7 1E+02 0.0022 28.1 3.7 19 230-248 62-80 (329)
299 TIGR02350 prok_dnaK chaperone 22.8 1.9E+02 0.004 28.7 5.8 46 54-101 304-349 (595)
300 PRK13406 bchD magnesium chelat 22.8 4.7E+02 0.01 26.1 8.5 90 53-150 418-509 (584)
301 PTZ00009 heat shock 70 kDa pro 22.7 2E+02 0.0042 29.1 5.9 43 57-101 315-357 (653)
302 CHL00094 dnaK heat shock prote 22.2 2.3E+02 0.005 28.4 6.3 47 54-102 308-354 (621)
303 cd01458 vWA_ku Ku70/Ku80 N-ter 22.1 4.7E+02 0.01 21.9 9.7 82 51-133 23-121 (218)
304 KOG3363 Uncharacterized conser 21.9 1.2E+02 0.0025 25.0 3.3 47 70-120 108-155 (196)
305 COG1240 ChlD Mg-chelatase subu 21.7 4.3E+02 0.0093 23.5 7.0 89 53-150 96-189 (261)
306 PF04430 DUF498: Protein of un 21.5 83 0.0018 23.7 2.4 46 72-121 51-96 (110)
307 PTZ00340 O-sialoglycoprotein e 21.3 1E+02 0.0022 28.5 3.3 29 54-82 50-78 (345)
308 PF13344 Hydrolase_6: Haloacid 21.3 1.3E+02 0.0029 22.1 3.4 75 55-149 17-91 (101)
309 PRK05778 2-oxoglutarate ferred 21.1 2.5E+02 0.0054 25.4 5.7 21 55-75 27-47 (301)
310 PF03702 UPF0075: Uncharacteri 21.0 93 0.002 29.0 3.0 69 53-121 66-143 (364)
311 PF02817 E3_binding: e3 bindin 20.7 74 0.0016 19.4 1.6 19 58-76 6-24 (39)
312 cd01817 RGS12_RBD Ubiquitin do 20.2 2.4E+02 0.0053 19.8 4.3 33 49-85 18-50 (73)
313 cd01461 vWA_interalpha_trypsin 20.1 4.3E+02 0.0092 20.6 8.0 87 53-149 19-110 (171)
314 PTZ00400 DnaK-type molecular c 20.0 1.5E+02 0.0033 30.0 4.5 44 57-102 350-393 (663)
No 1
>COG0332 FabH 3-oxoacyl-[acyl-carrier-protein]
Probab=100.00 E-value=1.9e-54 Score=388.13 Aligned_cols=269 Identities=19% Similarity=0.186 Sum_probs=235.9
Q ss_pred ceeEEeEEEEEcCCcccchhHHHhhhCCCCceeeeecCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEec
Q 023511 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGS 82 (281)
Q Consensus 3 ~~v~I~~ig~~lP~~~v~~~~~~~~~~~~~~~~~~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s 82 (281)
++++|.|+|.|+|+++++|++++++.+++++||.+-+|.|+|+++.++|+.++|+++|+++||+++|++|+|||+||++|
T Consensus 2 ~~a~i~g~G~~lP~~~vtn~d~e~~~~tsdewI~~rtGir~R~~a~~~e~~s~la~~Aa~~AL~~Agi~~~dIDlII~aT 81 (323)
T COG0332 2 MNAKILGIGSYLPERVVTNADLEKRVDTSDEWIETRTGIRERRIAADDETTSDLAVEAARKALEDAGISPDDIDLIIVAT 81 (323)
T ss_pred CcceEEEEEeecCCcccChHHHHhccCCCcceeeeecCCceeeecCCCccHHHHHHHHHHHHHHHcCCCHHHCCEEEEEc
Confidence 68999999999999999999999999999999996666666669989999999999999999999999999999999999
Q ss_pred ccCCCCCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeeccc----ccCCCCcc
Q 023511 83 ETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV----YAEGPARP 158 (281)
Q Consensus 83 ~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s----~~~~~~~~ 158 (281)
.||++..|++|+.||..||. .++.+||++.+|+||++||.+|..|+++|.+ +++|||++|.+| ++++.+..
T Consensus 82 ~tpd~~~Ps~A~~vq~~LG~---~~~~afDl~aaCsgf~yaL~~A~~~i~sG~~--k~vLVVg~e~~S~~ld~~dR~t~v 156 (323)
T COG0332 82 STPDHLFPSTACLVQARLGL---GGAPAFDLQAACSGFLYALSVADGLIRSGGY--KNVLVVGAETLSRILDWTDRDTCV 156 (323)
T ss_pred CCcccCCChHHHHHHHHhCC---CCcceeechhhhHHHHHHHHHHHHHHHcCCC--CEEEEEehhHhhccCCHhhccceE
Confidence 99999999999999988876 4589999999999999999999999999987 999999999998 45678999
Q ss_pred ccCcceEEEEEccCC-CccccccccccccCCcccccccCCCCcc-c--CCCCcc---cHHHHHHHHHHHHHHHHHHHHHh
Q 023511 159 TGGAAAVVMLVGPDA-PVAFESKLRGSHMSHAYDFYKPNLASEY-P--VVDGKL---SQTCYLMALDTCYKCLCSKYEKL 231 (281)
Q Consensus 159 ~fGDGAaA~ll~~~~-~~~i~~~~~~s~~~~~~~~~~p~~~~~~-~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l 231 (281)
+|||||+|+||++.+ ..+|+...+++++.....++.|.+++.. + ...+.+ ..++|.++++.+.+.+. +.|
T Consensus 157 lFgDGAgAvvl~~~~~~~~i~~~~l~sdg~~~~~l~~~~~~~~~~~~~~~~~~~~m~Gr~vfk~av~~~~~~~~---~~L 233 (323)
T COG0332 157 LFGDGAGAVVLEATEDDNGILDTDLGSDGSQGDLLYLPGGGSATPKEESGGGLLVMDGREVFKFAVRAMPKAIE---EVL 233 (323)
T ss_pred EEcCCceEEEEecCCCCcCeeeeeeeccccCCCeeeccCCCCccccccccccceeeccHHHHHHHHHHHHHHHH---HHH
Confidence 999999999999987 5688888788888876555555432221 0 000111 25889999988888887 568
Q ss_pred hcCCCCCCCCcEEecCCCChhHHHHHHHhccchhhhhcCCCccccccC
Q 023511 232 EGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNARLPSFLHLS 279 (281)
Q Consensus 232 ~~~g~~~~did~~i~Hq~n~~i~~~~~~~lg~~~~~~~~~~~~~~~~~ 279 (281)
+++|++++|||||+|||+|.+|++.+.++||+++++.-..-++|+|-|
T Consensus 234 ~~~~l~~~dId~~vpHQan~ri~~~i~~~l~~~~~k~~~~~~~yGNts 281 (323)
T COG0332 234 EKAGLTPEDIDWFVPHQANLRIIEAIAKKLGIPEEKVVVTVDKYGNTS 281 (323)
T ss_pred HHcCCCHHHCCEEccccccHHHHHHHHHHcCCCHHHHhhHHHHhcccc
Confidence 999999999999999999999999999999999999999999999975
No 2
>PLN02577 hydroxymethylglutaryl-CoA synthase
Probab=100.00 E-value=3.7e-50 Score=376.85 Aligned_cols=267 Identities=87% Similarity=1.404 Sum_probs=239.5
Q ss_pred CCceeEEeEEEEEcCCcccchhHHHhhhCCCCceeeeecCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEEE
Q 023511 1 MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEV 80 (281)
Q Consensus 1 ~~~~v~I~~ig~~lP~~~v~~~~~~~~~~~~~~~~~~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~ 80 (281)
+|++++|.++|.|+|+++|+|+++++..|.+++|+.+|+++|++++++++|++.+||++|+++||+++|++|++||+||+
T Consensus 1 ~~~~vgI~gig~Y~P~~~v~n~eLa~~~g~~~~~~~~GI~~r~~ava~~~Ed~~tmA~~AA~~aL~~agid~~~Idlliv 80 (459)
T PLN02577 1 MPKNVGILAMEVYFPPTCVQQEALEAHDGVSKGKYTIGLGQDCMAFCTDVEDVISMSLTVVKSLLEKYNIDPKQIGRLEV 80 (459)
T ss_pred CCCccEEEEEEEeCCCeEEcHHHHHHHhCCCHHHHhhccceeEeccCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 57899999999999999999999999999999999899999998888899999999999999999999999999999999
Q ss_pred ecccCCCCCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeecccccCCCCcccc
Q 023511 81 GSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTG 160 (281)
Q Consensus 81 ~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s~~~~~~~~~f 160 (281)
+|+|+++..|+++++|++.++++|.+++.+||++++|.||++||++|.+||++|.+++++||||++|..++...+...++
T Consensus 81 aTeT~~d~~ps~A~~v~~ll~~LG~~~~~afDi~~AC~G~~~AL~~A~~~i~sg~~~~~~aLVV~aD~a~~~~~~~e~t~ 160 (459)
T PLN02577 81 GSETVIDKSKSIKTFLMQLFEESGNTDIEGVDSTNACYGGTAALLNCVNWVESSSWDGRYGLVVAADSAVYAEGPARPTG 160 (459)
T ss_pred EcCCCCCCCCchHHHHHHHHHHhCCCCcEEeehhhhhHHHHHHHHHHHHHHHcCCCCCCeEEEEEechhhccCCCCCCCC
Confidence 99999999999999999999998888899999999999999999999999999864469999999999997655667888
Q ss_pred CcceEEEEEccCCCccccccccccccCCcccccccCCCCcccCCCCcccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 023511 161 GAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSN 240 (281)
Q Consensus 161 GDGAaA~ll~~~~~~~i~~~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~d 240 (281)
||||+|+||+++++..+.....++++.+..+||+|.++..+|.++|+++...|.+.+..+++.++++.+.+...|++.+|
T Consensus 161 GdGA~A~lv~~~~~~~l~~~~~g~~~~~~~Df~rP~~~~~~~~vdG~~s~~~yl~~~~~~~~~~~~k~~~~~~~g~~~~d 240 (459)
T PLN02577 161 GAGAVAMLVGPNAPIVFESKYRGSHMAHVYDFYKPDLASEYPVVDGKLSQTCYLMALDSCYKRFCEKYEKLEGKQFSISD 240 (459)
T ss_pred CcceEEEEEccCCCceeecccccccCcccchhcccCCCCCceEEcchHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHH
Confidence 99999999998765334333446788888999999876677888999998999999999999987654334556999999
Q ss_pred CcEEecCCCChhHHHHHHHhccchhhh
Q 023511 241 ADYFVFHSPYNKLVQKSFARLLFNDFM 267 (281)
Q Consensus 241 id~~i~Hq~n~~i~~~~~~~lg~~~~~ 267 (281)
+||++|||++.+|.++..++|.+++..
T Consensus 241 ~d~~vfHqP~~km~~ka~~~l~~~~~~ 267 (459)
T PLN02577 241 ADYFVFHAPYNKLVQKSFARLVYNDFQ 267 (459)
T ss_pred cCEEEecCCccchhHHHHHHHhhhhhh
Confidence 999999999999999999999987644
No 3
>TIGR01833 HMG-CoA-S_euk 3-hydroxy-3-methylglutaryl-CoA-synthase, eukaryotic clade. Hydroxymethylglutaryl(HMG)-CoA synthase is the first step of isopentenyl pyrophosphate (IPP) biosynthesis via the mevalonate pathway. This pathway is found mainly in eukaryotes, but also in archaea and some bacteria. This model is specific for eukaryotes.
Probab=100.00 E-value=9.9e-47 Score=353.28 Aligned_cols=267 Identities=69% Similarity=1.164 Sum_probs=236.9
Q ss_pred eeEEeEEEEEcCCcccchhHHHhhhCCCCceeeeecCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecc
Q 023511 4 NVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSE 83 (281)
Q Consensus 4 ~v~I~~ig~~lP~~~v~~~~~~~~~~~~~~~~~~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~ 83 (281)
+|+|.++|+|+|+++++|+++++..|.+++|+..|+++|++++++++|++.+|+++|++++|++++++|++||+||++|.
T Consensus 1 ~vgI~~ig~y~P~~~v~~~eLa~~~g~~~~k~~~GI~~rr~av~~~~Ed~~tma~~AA~~lL~~a~id~~~Id~Liv~Te 80 (454)
T TIGR01833 1 DVGILALEIYFPSQYVDQAELEKYDGVSAGKYTIGLGQTKMGFCTDREDINSLCLTVVSKLMERYNIDYNQIGRLEVGTE 80 (454)
T ss_pred CcEEEEEEEeCCCeEEcHHHHHHhcCCCHHHheechhheecccCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEECC
Confidence 58999999999999999999999999999999899999998889999999999999999999999999999999999999
Q ss_pred cCCCCCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeecccccCCCCccccCcc
Q 023511 84 TVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAA 163 (281)
Q Consensus 84 t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s~~~~~~~~~fGDG 163 (281)
|+++..|+.+++|++.|+++|.+++.+||++++|+||++||.+|.+|++++.+++++||||++|+..|.+.....++|||
T Consensus 81 S~~d~sps~a~~v~~lL~~lG~~~~~~fDi~~AC~G~t~AL~~A~~~i~s~~~~~~~aLVV~sDia~y~~~~~~~t~GaG 160 (454)
T TIGR01833 81 TIIDKSKSVKTVLMQLFEESGNTDVEGIDTTNACYGGTAALFNAINWIESSSWDGRYALVVAGDIAVYAKGNARPTGGAG 160 (454)
T ss_pred CCCCCCCchHHHHHHHHHhcCCCCceEEeccccchhHHHHHHHHHHHHHcCCcCCCeEEEEEeccccccCCCeeeccccc
Confidence 99999999999999999998888899999999999999999999999999864569999999999888776677899999
Q ss_pred eEEEEEccCCCccccccccccccCCcccccccCCCCcccCCCCcccHHHHHHHHHHHHHHHHHHHH-Hhhc----CCCCC
Q 023511 164 AVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYE-KLEG----KQFSL 238 (281)
Q Consensus 164 AaA~ll~~~~~~~i~~~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~----~g~~~ 238 (281)
|+|+||+++++..+......+++.+..+||+|...+.+|.++|+++...|..++..++..+.++.+ ++++ .|.++
T Consensus 161 AvAmLv~~~~~~~~~~~~~~~~~~~~~DF~rP~~~~~~p~vdg~~S~~~Yl~a~~~~y~~y~~~~~~a~~~~~~~~~~~~ 240 (454)
T TIGR01833 161 AVAMLIGPNAPIVFERGLRGSHMQHAYDFYKPDLASEYPVVDGKLSIQCYLSALDRCYKSYCKKIEKQWGKSGGDRKFTL 240 (454)
T ss_pred eEEEEeccCccceecCccceEEEeecccccCCCCCCcccccCCccCHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCH
Confidence 999999998864444433467888899999997655589999999999999999999988865533 2222 36889
Q ss_pred CCCcEEecCCCChhHHHHHHHhccchhhhhcC
Q 023511 239 SNADYFVFHSPYNKLVQKSFARLLFNDFMRNA 270 (281)
Q Consensus 239 ~did~~i~Hq~n~~i~~~~~~~lg~~~~~~~~ 270 (281)
+|+|+++||+|+.+|.++..+++-+++....+
T Consensus 241 ~dfd~~~fH~P~~km~~ka~~~~~~~~~~~~~ 272 (454)
T TIGR01833 241 NDFDYMVFHSPYCKLVQKSLARLLYNDFLRNP 272 (454)
T ss_pred hHcCEEeccCCcccHHHHHHHHHHHhhhhhcc
Confidence 99999999999999999998888766555443
No 4
>PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=100.00 E-value=1.3e-45 Score=336.49 Aligned_cols=267 Identities=18% Similarity=0.149 Sum_probs=219.2
Q ss_pred eeEEeEEEEEcCCcccchhHHHhhhCCCCceeeeecCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecc
Q 023511 4 NVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSE 83 (281)
Q Consensus 4 ~v~I~~ig~~lP~~~v~~~~~~~~~~~~~~~~~~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~ 83 (281)
+++|.++|+|+|+++++|+++.+.++.+++++...+|.++|++++++|++.+|+++|+++||+++|++|+|||+||++|+
T Consensus 3 ~~~I~~~g~~lP~~~v~~~~~~~~~~~~~~~i~~~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~ag~~~~~Id~li~~t~ 82 (326)
T PRK05963 3 SSRIAGFGHAVPDRRVENAEIEAQLGLETGWIERRTGIRCRRWAAPDETLSDLAASAGDMALSDAGIERSDIALTLLATS 82 (326)
T ss_pred ccEEEEEEEECCCCeecHHHHHHHcCCCHHHhhhccCCeEEEEcCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEECC
Confidence 57999999999999999999999999888888877777777788889999999999999999999999999999999999
Q ss_pred cCCCCCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeecccc----cCCCCccc
Q 023511 84 TVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVY----AEGPARPT 159 (281)
Q Consensus 84 t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s~----~~~~~~~~ 159 (281)
+|++..|+.+.+|++.|++ +++.+||++++|+|+++||++|.++++++ . ++||||++|.++. .++.+..+
T Consensus 83 ~~d~~~p~~a~~v~~~Lg~---~~~~~~di~~~C~g~~~aL~~A~~~l~~~--~-~~aLVv~~d~~s~~~~~~~~~~~~l 156 (326)
T PRK05963 83 TPDHLLPPSAPLLAHRLGL---QNSGAIDLAGACAGFLYALVLADGFVRAQ--G-KPVLVVAANILSRRINMAERASAVL 156 (326)
T ss_pred CCCCCCCcHHHHHHHHhCC---CCCceeeccchhhHHHHHHHHHHHHHHcC--C-CeEEEEEechhhccCCccccCceEE
Confidence 9999999999999998875 45789999999999999999999999987 2 8999999999872 22346789
Q ss_pred cCcceEEEEEccCCC--ccccccccccccCCcccccccCCCCcccCCC----Cc--c----cHHHHHHHHHHHHHHHHHH
Q 023511 160 GGAAAVVMLVGPDAP--VAFESKLRGSHMSHAYDFYKPNLASEYPVVD----GK--L----SQTCYLMALDTCYKCLCSK 227 (281)
Q Consensus 160 fGDGAaA~ll~~~~~--~~i~~~~~~s~~~~~~~~~~p~~~~~~~~~~----~~--~----~~~~~~~~~~~~~~~~~~~ 227 (281)
|||||+|+||++++. .+++...+.++++.+..+..|.++...|... .. + ....|...+..+.+.+.
T Consensus 157 fGDgA~A~ll~~~~~~~~~~l~~~~~t~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 234 (326)
T PRK05963 157 FADAAGAVVLAPSAKANSGVLGSQLISDGSHYDLIKIPAGGSARPFAPERDASEFLMTMQDGRAVFTEAVRMMSGASQ-- 234 (326)
T ss_pred EeecceEEEEEecCCCCCceEEEEEEEcCCCCCeEEeCCCCcCCCCcccccccccceEecCCHHHHHHHHHHHHHHHH--
Confidence 999999999998664 3565555566666555555555444333110 01 1 13444444444444444
Q ss_pred HHHhhcCCCCCCCCcEEecCCCChhHHHHHHHhccchhhhhcCCCccccccC
Q 023511 228 YEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNARLPSFLHLS 279 (281)
Q Consensus 228 ~~~l~~~g~~~~did~~i~Hq~n~~i~~~~~~~lg~~~~~~~~~~~~~~~~~ 279 (281)
+.|+++|++++|||+|+|||+|.++++++.++||+.+++.....++|||++
T Consensus 235 -~~L~~~gl~~~did~~~~h~~~~~~~~~~~~~l~l~~~k~~~~l~~~Gn~~ 285 (326)
T PRK05963 235 -NVLASAAMTPQDIDRFFPHQANARIVDKVCETIGIPRAKAASTLETYGNSS 285 (326)
T ss_pred -HHHHHcCCCHHHCCEEEeCCCCHHHHHHHHHHcCCCHHHhhhhHHhhCcHH
Confidence 468899999999999999999999999999999999999877789999864
No 5
>PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=100.00 E-value=3.1e-45 Score=337.02 Aligned_cols=268 Identities=20% Similarity=0.174 Sum_probs=211.1
Q ss_pred CceeEEeEEEEEcCCcccchhHHHh-hhCCCC---ceeeeecCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccE
Q 023511 2 AKNVGILAMDIYFPPTCVQQEALEA-HDGASK---GKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGR 77 (281)
Q Consensus 2 ~~~v~I~~ig~~lP~~~v~~~~~~~-~~~~~~---~~~~~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~ 77 (281)
.++++|.++|+|+|+++++|+++.. .++.+. +++...+|.++|+++.++|++.+|+++|+++||+++|++|+|||+
T Consensus 5 ~~~~~I~~~g~~lP~~~v~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~~~~~e~~~~la~~Aa~~aL~~a~~~~~dId~ 84 (353)
T PRK12880 5 FDKAKISGICVSVPEHKICIDDELESVFSNDIKTLKRMKKVIGLNTRYICDENTCVSDLGKHAANTLLQGLNIDKNSLDA 84 (353)
T ss_pred ccccEEEEEEEECCCeEecHHHHHHHhcCcchhhhhhhhhccCceEEEeCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCE
Confidence 3578999999999999999997544 443221 234445666666688889999999999999999999999999999
Q ss_pred EEEecccCCCCCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeecccc----cC
Q 023511 78 LEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVY----AE 153 (281)
Q Consensus 78 li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s~----~~ 153 (281)
||++|+||++..|+++++|++.||+. +++.+||+++||+||++||++|.+|+++|.. + +|||++|.+|. .+
T Consensus 85 lI~~t~t~d~~~P~~a~~v~~~Lg~~--~~~~~~di~~~C~g~~~aL~~A~~~i~~~~~--~-~LVv~~e~~S~~~~~~d 159 (353)
T PRK12880 85 LIVVTQSPDFFMPSTACYLHQLLNLS--SKTIAFDLGQACAGYLYGLFVAHSLIQSGLG--K-ILLICGDTLSKFIHPKN 159 (353)
T ss_pred EEEEcCCCCCCCCcHHHHHHHHhCCC--CCceEEehhhhhHHHHHHHHHHHHHHHcCCC--C-EEEEEehhhhccCCccc
Confidence 99999999999999999999999864 3688999999999999999999999999853 7 99999999882 23
Q ss_pred CCCccccCcceEEEEEccCCCc-cccccccccccCCcccccccCCCCcccCCC----------------C--cc-cHHHH
Q 023511 154 GPARPTGGAAAVVMLVGPDAPV-AFESKLRGSHMSHAYDFYKPNLASEYPVVD----------------G--KL-SQTCY 213 (281)
Q Consensus 154 ~~~~~~fGDGAaA~ll~~~~~~-~i~~~~~~s~~~~~~~~~~p~~~~~~~~~~----------------~--~~-~~~~~ 213 (281)
+.+..+|||||+|+||++++.. .+ ..+.+++..+..+..|.++...|... . .+ ...+|
T Consensus 160 ~~~~~lFGDGAaA~vl~~~~~~~~~--~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~ 237 (353)
T PRK12880 160 MNLAPIFGDGVSATLIEKTDFNEAF--FELGSDGKYFDKLIIPKGAMRIPKADIFNDDSLMQTEEFRQLENLYMDGANIF 237 (353)
T ss_pred CCceeeecccceEEEEEecCCCCce--EEEEecCCCCCeEEecCCCcCCCccccccccccccccccccCceEEEcCHHHH
Confidence 4568899999999999975432 22 23456666555566665443322110 0 01 14666
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCcEEecCCCChhHHHHHHHhccchhhhhcC-CCccccccC
Q 023511 214 LMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNA-RLPSFLHLS 279 (281)
Q Consensus 214 ~~~~~~~~~~~~~~~~~l~~~g~~~~did~~i~Hq~n~~i~~~~~~~lg~~~~~~~~-~~~~~~~~~ 279 (281)
.++++.+.+.+. +.|+++|++.+|||+|++||+|.+|++.+.++||+++++.-. ..++|||.+
T Consensus 238 ~~~~~~~~~~i~---~~L~~~gl~~~did~~v~HQ~~~~i~~~i~~~Lgl~~ek~~~~~l~~~GNts 301 (353)
T PRK12880 238 NMALECEPKSFK---EILEFSKVDEKDIAFHLFHQSNAYLVDCIKEELKLNDDKVPNFIMEKYANLS 301 (353)
T ss_pred HHHHHHHHHHHH---HHHHHcCCCHHHCCEEEECCCCHHHHHHHHHHhCCCHHHhhhhhHHhhCCHH
Confidence 666666666554 468899999999999999999999999999999999988632 358999975
No 6
>COG3425 PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism]
Probab=100.00 E-value=2.1e-44 Score=324.51 Aligned_cols=260 Identities=33% Similarity=0.510 Sum_probs=239.7
Q ss_pred ceeEEeEEEEEcCCcccchhHHHhhhCCCCceeeeecCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEec
Q 023511 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGS 82 (281)
Q Consensus 3 ~~v~I~~ig~~lP~~~v~~~~~~~~~~~~~~~~~~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s 82 (281)
|.++|.+++.|+|..++..+|+++..+.+++++..|+++..+++++.+|++.+||++|++++|.++++||.+|++|+++|
T Consensus 1 ~~iGI~~~g~y~p~~~i~~~ela~~~g~d~~k~~~gl~~~e~sv~~~~ED~vTmaveAA~~~l~r~~~D~~~Ig~v~vgT 80 (377)
T COG3425 1 MMIGIVGIGAYIPRYRIKLEELARAWGVDPEKIKKGLGVEEKSVPPWDEDAVTMAVEAARNALKRADIDPSKIGAVIVGS 80 (377)
T ss_pred CccccceEEEeccceEeeHHHHHhhcCCChHHhhhccccccccCCCCchhHHHHHHHHHHHHHhccCCCHHHCceEEEec
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeecccccCC-CCccccC
Q 023511 83 ETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEG-PARPTGG 161 (281)
Q Consensus 83 ~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s~~~~-~~~~~fG 161 (281)
.|+++...+++++|++.++.. +++.++|+.++|.+++.||+.|.+|+.+|.+ +++|||++|+..+.+. ..+.++|
T Consensus 81 ES~~d~~K~~at~v~~~lg~~--~~~~~~d~~~AC~agT~aL~~a~~~v~s~~~--~~~LvI~sD~a~~~~~~~~E~t~G 156 (377)
T COG3425 81 ESGPDAVKPTATIVAEALGLN--PSARAADVEFACYAGTAALQAAIGWVESGMI--SYGLVIGADTAQYAPGDALEYTAG 156 (377)
T ss_pred CCCcccccchHHHHHHHhCCC--CceehhhHHHHHHHHHHHHHHHHHHHHcCCc--cceEEEeehhhccCCCcccCccCC
Confidence 999999999999999999875 5799999999999999999999999999976 8999999999998776 6799999
Q ss_pred cceEEEEEccCCCccccccccccccCCcccccccCCCCcccCCCCcccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 023511 162 AAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNA 241 (281)
Q Consensus 162 DGAaA~ll~~~~~~~i~~~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~di 241 (281)
+||+|+||++++....+....++++++.++||+|.+. .+|.++++++.+.|.+++..+++.+. ++.|++++|+
T Consensus 157 AGavA~lIg~n~~~~a~~~~~~syt~d~~DFwRp~~~-~yp~~dg~~s~~~Y~~~~~~a~~~~~------~k~gls~~df 229 (377)
T COG3425 157 AGAVAFLIGKNPPIVAEFEGTGSYTTDTPDFWRPDGQ-PYPYVDGRFSEPAYFKHVENAAKGYM------EKTGLSPDDF 229 (377)
T ss_pred CceEEEEEccCCCeEEEecCceEEecCCCcccccCCC-cccccCceecHHHHHHHHHHHHHHHH------HHhCCChhhh
Confidence 9999999999865433333447889999999999864 78999999999999999999998885 5689999999
Q ss_pred cEEecCCCChhHHHHHHHhccchhhhhcCCCc
Q 023511 242 DYFVFHSPYNKLVQKSFARLLFNDFMRNARLP 273 (281)
Q Consensus 242 d~~i~Hq~n~~i~~~~~~~lg~~~~~~~~~~~ 273 (281)
||++|||||.+|..++++.++++.++..|+..
T Consensus 230 dy~vfH~P~~k~~~ka~k~l~~~~e~v~~~l~ 261 (377)
T COG3425 230 DYIVFHQPNGKFPKKAAKSLGFKEEQVKPGLV 261 (377)
T ss_pred CeEEecCCCCchHHHHHHHhCccHhhcCccch
Confidence 99999999999999999999999999988843
No 7
>PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=100.00 E-value=4.2e-43 Score=320.33 Aligned_cols=272 Identities=13% Similarity=0.098 Sum_probs=214.1
Q ss_pred CCceeEEeEEEEEcCCcccchhHHHhhhCCCCceeeeecCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEEE
Q 023511 1 MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEV 80 (281)
Q Consensus 1 ~~~~v~I~~ig~~lP~~~v~~~~~~~~~~~~~~~~~~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~ 80 (281)
|+++++|.++|+|+|+++++|+++.+..+.+.+++...+|.++|++.. +++..+|+.+|+++||+++|++|+|||+||+
T Consensus 1 ~~~~~~I~~~g~~lP~~~v~~~~~~~~~~~~~~~i~~~~Gi~~R~~~~-~~~~~~la~~Aa~~aL~~ag~~~~dId~li~ 79 (329)
T PRK07204 1 MKRYISIKGIGTYLPKRKVDSLELDKKLDLPEGWVLKKSGVKTRHFVD-GETSSYMGAEAAKKAVEDAKLTLDDIDCIIC 79 (329)
T ss_pred CCCCcEEEEEEEeCCCceecHHHHHHhhCCCHhHhhhccCceEEeecC-CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 688999999999999999999999999998888887666766666776 8899999999999999999999999999999
Q ss_pred ecccCCCCCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeecccc----cCCCC
Q 023511 81 GSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVY----AEGPA 156 (281)
Q Consensus 81 ~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s~----~~~~~ 156 (281)
+|+++++..|+++.+|++.|++.+ ..+.++|++++|+|+++||.+|..++++|.+ ++||||++|.++. .+..+
T Consensus 80 ~~~~~~~~~p~~a~~v~~~lgl~~-~~~~~~~v~~~C~~~~~al~~a~~~l~~g~~--~~~Lvv~~e~~s~~~~~~~~~~ 156 (329)
T PRK07204 80 ASGTIQQAIPCTASLIQEQLGLQH-SGIPCFDINSTCLSFITALDTISYAIECGRY--KRVLIISSEISSVGLNWGQNES 156 (329)
T ss_pred ECCCCCCCCccHHHHHHHHhCCCC-CCceEEEccchhHHHHHHHHHHHHHHHCCCC--CEEEEEEeccccCCCCcccCcc
Confidence 999999888999999999888643 1378999999999999999999999999965 9999999999872 22345
Q ss_pred ccccCcceEEEEEccCCC-ccccccccccccCCcccccccCCCCcccCC------CCc----cc-HHHHHHHHHHHHHHH
Q 023511 157 RPTGGAAAVVMLVGPDAP-VAFESKLRGSHMSHAYDFYKPNLASEYPVV------DGK----LS-QTCYLMALDTCYKCL 224 (281)
Q Consensus 157 ~~~fGDGAaA~ll~~~~~-~~i~~~~~~s~~~~~~~~~~p~~~~~~~~~------~~~----~~-~~~~~~~~~~~~~~~ 224 (281)
..+|||||+|+||++++. .+++...+.+++........|.++...+.. ... .. ...+......+.+.+
T Consensus 157 ~~lfGDGAaA~ll~~~~~~~~il~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 236 (329)
T PRK07204 157 CILFGDGAAAVVITKGDHSSRILASHMETYSSGAHLSEIRGGGTMIHPREYSEERKEDFLFDMNGRAIFKLSSKYLMKFI 236 (329)
T ss_pred eEEEecccEEEEEEEcCCCCcEEEEEEEEecCCCCceEEecCCcCCCCcccccccccCceEEECCHHHHHHHHHHHHHHH
Confidence 789999999999998764 355554445555432222223222221110 011 01 233333333333444
Q ss_pred HHHHHHhhcCCCCCCCCcEEecCCCChhHHHHHHHhccchhhhhcCCCccccccC
Q 023511 225 CSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNARLPSFLHLS 279 (281)
Q Consensus 225 ~~~~~~l~~~g~~~~did~~i~Hq~n~~i~~~~~~~lg~~~~~~~~~~~~~~~~~ 279 (281)
. +.|+++|++++|||+|++||+|.++++.+.++|++.+++.....+.|||++
T Consensus 237 ~---~~L~~~gl~~~did~~~~H~~~~~~~~~i~~~l~l~~e~~~~~~~~~Gn~~ 288 (329)
T PRK07204 237 D---KLLMDAGYTLADIDLIVPHQASGPAMRLIRKKLGVDEERFVTIFEDHGNMI 288 (329)
T ss_pred H---HHHHHcCCCHHHCCEEEeCCCCHHHHHHHHHHcCCCHHHhhhhHhhhCcHH
Confidence 3 457889999999999999999999999999999999988777788999864
No 8
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=100.00 E-value=2.6e-42 Score=314.42 Aligned_cols=271 Identities=15% Similarity=0.142 Sum_probs=218.3
Q ss_pred CCceeEEeEEEEEcCCcccchhHHHhhhCCCCceeeeecCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEEE
Q 023511 1 MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEV 80 (281)
Q Consensus 1 ~~~~v~I~~ig~~lP~~~v~~~~~~~~~~~~~~~~~~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~ 80 (281)
|+|+++|.++|+|+|+++++++|+.+..+.+.+++...+|.++|++++++++..+|+.+|+++||+++|++++|||+||+
T Consensus 1 ~~~~~~I~~ig~~~P~~~v~~~e~~~~~~~~~~~i~~~~Gi~~r~~~~~~~~~~~la~~A~~~al~~ag~~~~~Id~li~ 80 (325)
T PRK12879 1 MMSYARITGIGTYVPPRVLTNDDLETFIDTSDEWIVQRTGIKERRIAHVEEYTSDLAIKAAERALARAGLDAEDIDLIIV 80 (325)
T ss_pred CCCCCEEEEEEEECCCcEEcHHHHHHhcCCCHHHhhhccCceEEEECCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 67889999999999999999999999988777777655666555588889999999999999999999999999999999
Q ss_pred ecccCCCCCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeecccc----cCCCC
Q 023511 81 GSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVY----AEGPA 156 (281)
Q Consensus 81 ~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s~----~~~~~ 156 (281)
+|+++++..|+.+.++++.+++ +++.+++++++|+|++.||..|..+|++|.. ++||||++|.++. .++..
T Consensus 81 ~~~~~~~~~~~~a~~l~~~lg~---~~~~~~~v~~~C~~~~~al~~A~~~l~~g~~--~~~Lvv~~e~~s~~~~~~~~~~ 155 (325)
T PRK12879 81 ATTTPDYLFPSTASQVQARLGI---PNAAAFDINAACAGFLYGLETANGLITSGLY--KKVLVIGAERLSKVTDYTDRTT 155 (325)
T ss_pred EcCCCCCCCChHHHHHHHHhCC---CCCcEEEECccchHHHHHHHHHHHHHHcCCC--CEEEEEEehhhcCcCCccccCc
Confidence 9999988899999988887775 3477999999999999999999999999965 9999999999872 22345
Q ss_pred ccccCcceEEEEEccCCC-ccccccccccccCCcccccccCCCCcccCCC--Cc----c-cHHHHHHHHHHHHHHHHHHH
Q 023511 157 RPTGGAAAVVMLVGPDAP-VAFESKLRGSHMSHAYDFYKPNLASEYPVVD--GK----L-SQTCYLMALDTCYKCLCSKY 228 (281)
Q Consensus 157 ~~~fGDGAaA~ll~~~~~-~~i~~~~~~s~~~~~~~~~~p~~~~~~~~~~--~~----~-~~~~~~~~~~~~~~~~~~~~ 228 (281)
..+|||||+|+||++++. .++....+.++++....+..+.+++..+... .. . ....+...++.+.+.+.
T Consensus 156 ~~~~GDgAaA~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--- 232 (325)
T PRK12879 156 CILFGDGAGAVVLEATENEPGFIDYVLGTDGDGGDILYRTGLGTTMDRDALSGDGYIVQNGREVFKWAVRTMPKGAR--- 232 (325)
T ss_pred eEEEeecceEEEEEecCCCCCeEEEEEEEcCCCCCeEEEcCCCCCCCccccccCccEEEcCHHHHHHHHHHHHHHHH---
Confidence 679999999999998774 3555555566665545555554444332110 00 0 13455555554455554
Q ss_pred HHhhcCCCCCCCCcEEecCCCChhHHHHHHHhccchhhhhcCCCccccccC
Q 023511 229 EKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNARLPSFLHLS 279 (281)
Q Consensus 229 ~~l~~~g~~~~did~~i~Hq~n~~i~~~~~~~lg~~~~~~~~~~~~~~~~~ 279 (281)
+.|+++|++++|||+|++||+|.++++.+.++||++.++.....+.|||++
T Consensus 233 ~~L~~~g~~~~did~~~~h~~~~~~~~~~~~~lg~~~~~~~~~~~~~Gn~~ 283 (325)
T PRK12879 233 QVLEKAGLTKDDIDWVIPHQANLRIIESLCEKLGIPMEKTLVSVEYYGNTS 283 (325)
T ss_pred HHHHHcCCCHHHCCEEEECCCCHHHHHHHHHHcCCCHHHhhhhHhhhCchH
Confidence 467889999999999999999999999999999999998777788999874
No 9
>PRK04262 hypothetical protein; Provisional
Probab=100.00 E-value=2.9e-42 Score=317.08 Aligned_cols=264 Identities=27% Similarity=0.370 Sum_probs=207.8
Q ss_pred ceeEEeEEEEEcCCcccchhHHHhhhCCCCceeeeecCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEec
Q 023511 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGS 82 (281)
Q Consensus 3 ~~v~I~~ig~~lP~~~v~~~~~~~~~~~~~~~~~~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s 82 (281)
|+++|.++|+|+|+++++|+++++.++.+++|+...+|.++|++++++++..+|+.+|+++||+++|++|+|||+||++|
T Consensus 1 ~~v~I~~~g~ylP~~~v~~~el~~~~~~~~~~i~~~~Gi~~R~~~~~~~~~~~la~~Aa~~aL~~ag~~~~dId~li~~s 80 (347)
T PRK04262 1 MMVGIVGYGAYIPRYRIKVEEIARVWGDDPEAIKRGLGVEEKSVPGPDEDTATIAVEAARNALKRAGIDPKEIGAVYVGS 80 (347)
T ss_pred CceeEEEEEEeCCCEEecHHHHHHHhCcCHHHHhhccCeeeeecCCCCcCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEe
Confidence 67999999999999999999999999999998876666666668888999999999999999999999999999999999
Q ss_pred ccCCCCCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeecccccCC-CCccccC
Q 023511 83 ETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEG-PARPTGG 161 (281)
Q Consensus 83 ~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s~~~~-~~~~~fG 161 (281)
+++++..|+.+.++++.|++. +++.++|++++|+|+++||++|..++++|.. ++||||++|.....+. ....+||
T Consensus 81 ~~~~~~~p~~a~~v~~~Lgl~--~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~--~~aLVv~~e~~~~~~~~~~~~~~G 156 (347)
T PRK04262 81 ESHPYAVKPTATIVAEALGAT--PDLTAADLEFACKAGTAALQAAMGLVKSGMI--KYALAIGADTAQGAPGDALEYTAA 156 (347)
T ss_pred cCCCcccccHHHHHHHHcCCC--CCceEEEHHHhHHHHHHHHHHHHHHHHcCCC--CEEEEEEEeeeccCCCCCCCCcCC
Confidence 999988899999888878763 2478999999999999999999999999965 9999999999654322 3356789
Q ss_pred cceEEEEEccCCCc-cccccccccccCCcccccccCCCCcccCCCCcccH-HHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 023511 162 AAAVVMLVGPDAPV-AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQ-TCYLMALDTCYKCLCSKYEKLEGKQFSLS 239 (281)
Q Consensus 162 DGAaA~ll~~~~~~-~i~~~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 239 (281)
|||+|+||++++.. .+.... +...+..+++++. +..++.....+.. ..|...+..+++ +.|+++|++++
T Consensus 157 DGA~A~ll~~~~~~~~i~~~~--~~~~d~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~------~~L~~~gl~~~ 227 (347)
T PRK04262 157 AGGAAFIIGKEEVIAEIEATY--SYTTDTPDFWRRE-GEPYPRHGGRFTGEPAYFKHIISAAK------GLMEKLGLKPS 227 (347)
T ss_pred CCcEEEEEecCcccceeeccc--cccccchhhcCCC-CCcCCCcCceecchHHHHHHHHHHHH------HHHHHhCcCHH
Confidence 99999999976542 343321 1112223444432 2222322222221 233333333333 35788999999
Q ss_pred CCcEEecCCCChhHHHHHHHhccchhhhhcCCC--ccccccC
Q 023511 240 NADYFVFHSPYNKLVQKSFARLLFNDFMRNARL--PSFLHLS 279 (281)
Q Consensus 240 did~~i~Hq~n~~i~~~~~~~lg~~~~~~~~~~--~~~~~~~ 279 (281)
|||+|+|||+|.+|++.+.++||+.+++...++ ++|||++
T Consensus 228 dId~~v~Hq~n~~~~~~~~~~Lgl~~ek~~~~~~~~~~GNt~ 269 (347)
T PRK04262 228 DYDYAVFHQPNGKFPLRVAKMLGFTKEQVKPGLLTPYIGNTY 269 (347)
T ss_pred HhceeecCCCchHHHHHHHHHcCCCHHHhhccchhhhhCChH
Confidence 999999999999999999999999999887654 8999975
No 10
>CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional
Probab=100.00 E-value=7.5e-42 Score=311.85 Aligned_cols=268 Identities=17% Similarity=0.188 Sum_probs=209.6
Q ss_pred ceeEEeEEEEEcCCcccchhHHHhhhCCCCceeeeecCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEec
Q 023511 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGS 82 (281)
Q Consensus 3 ~~v~I~~ig~~lP~~~v~~~~~~~~~~~~~~~~~~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s 82 (281)
|.++|.++|+|+|+++|+|+|++++++.++++|...+|.++|++..++++..+|+.+|+++||+++|++|+|||.||++|
T Consensus 1 ~~v~I~~~g~~lP~~~v~~~e~~~~~~~~~~~i~~~~gi~~r~~~~~~~~~~~la~~A~~~aL~~ag~~~~dId~vi~~s 80 (326)
T CHL00203 1 MGVHILSTGSSVPNFSVENQQFEDIIETSDHWISTRTGIKKRHLAPSSTSLTKLAAEAANKALDKAHMDPLEIDLIILAT 80 (326)
T ss_pred CccEEEEEEEECCCeEEcHHHHHHhcCCChhhEeeccCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEe
Confidence 57899999999999999999999999977777776666666668888999999999999999999999999999999999
Q ss_pred ccCCCCCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeecccc----cCCCCcc
Q 023511 83 ETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVY----AEGPARP 158 (281)
Q Consensus 83 ~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s~----~~~~~~~ 158 (281)
+++++. +..+.++++.|+. .++.++|++++|+|++.||++|..+|++|.+ +++|||++|.++. .++....
T Consensus 81 ~~~~~~-~~~~~~v~~~Lg~---~~~~~~~v~~~Casg~~al~~A~~~i~sg~~--~~~Lvv~~e~~s~~~~~~~~~~~~ 154 (326)
T CHL00203 81 STPDDL-FGSASQLQAEIGA---TRAVAFDITAACSGFILALVTATQFIQNGSY--KNILVVGADTLSKWIDWSDRKTCI 154 (326)
T ss_pred CCCCCC-CchHHHHHHHhCC---CCCceeeecccchhHHHHHHHHHHHHHcCCC--CEEEEEEehhhhCcCCcccCCceE
Confidence 888764 4567777777764 4578899999999999999999999999965 9999999999882 2334678
Q ss_pred ccCcceEEEEEccCCCccccccccccccCCcccccccCCC---Ccc---cCCCCcc------cHHHHHHHHHHHHHHHHH
Q 023511 159 TGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLA---SEY---PVVDGKL------SQTCYLMALDTCYKCLCS 226 (281)
Q Consensus 159 ~fGDGAaA~ll~~~~~~~i~~~~~~s~~~~~~~~~~p~~~---~~~---~~~~~~~------~~~~~~~~~~~~~~~~~~ 226 (281)
+|||||+|+||++.+..+++...+.++++.+..+..+..+ ..+ ...++.+ ..+.|.+.++.+++.+.
T Consensus 155 ~fgDga~A~ll~~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~- 233 (326)
T CHL00203 155 LFGDGAGAAIIGASYENSILGFKLCTDGKLNSHLQLMNKPVNNQSFGTTKLPQGQYQSISMNGKEVYKFAVFQVPAVII- 233 (326)
T ss_pred EEcceeeEEEEEEcCCCCeEEEEEEEcCCCcceEEecCCCCCcccccccccccCCcceEEECCHHHHHHHHHHHHHHHH-
Confidence 9999999999998664444444444555433322111100 000 0001111 13556666655555554
Q ss_pred HHHHhhcCCCCCCCCcEEecCCCChhHHHHHHHhccchhhhhcCCCccccccC
Q 023511 227 KYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNARLPSFLHLS 279 (281)
Q Consensus 227 ~~~~l~~~g~~~~did~~i~Hq~n~~i~~~~~~~lg~~~~~~~~~~~~~~~~~ 279 (281)
+.|+++|++++|||+|++||+|.++++.+.++||+++++.....+.|||++
T Consensus 234 --~~L~~~g~~~~did~~~~hq~~~~~~~~~~~~lgl~~~k~~~~l~~~Gn~~ 284 (326)
T CHL00203 234 --KCLNALNISIDEVDWFILHQANKRILEAIANRLSVPNSKMITNLEKYGNTS 284 (326)
T ss_pred --HHHHHcCCCHHHCCEEEECCCCHHHHHHHHHHhCCCHHHhhhHHHhhCcHH
Confidence 468899999999999999999999999999999999999877789999964
No 11
>PLN02326 3-oxoacyl-[acyl-carrier-protein] synthase III
Probab=100.00 E-value=7.1e-42 Score=317.87 Aligned_cols=268 Identities=13% Similarity=0.131 Sum_probs=209.7
Q ss_pred ceeEEeEEEEEcCCcccchhHHHhhhCCCCceeeeecCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEec
Q 023511 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGS 82 (281)
Q Consensus 3 ~~v~I~~ig~~lP~~~v~~~~~~~~~~~~~~~~~~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s 82 (281)
++++|.|+|+|+|+++++|+++.+.++.+++++...+|.++++++.++++..+|+.+|+++||+++|++|+|||+||++|
T Consensus 46 ~~~~I~g~g~~lP~~~v~n~el~~~~~~~~~~i~~~tGi~~R~~~~~~~~~~~La~~Aa~~aL~~agi~~~dId~li~~s 125 (379)
T PLN02326 46 SGSKLVGCGSAVPKLLITNDDLSKLVDTSDEWIATRTGIRNRRVLSGDETLTSLAVEAAKKALEMAGVDPEDVDLVLLCT 125 (379)
T ss_pred CCcEEEEEEEECCCceecHHHHHHhcCCchhheecccCcceEeecCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEe
Confidence 57899999999999999999999998887888775555555558888899999999999999999999999999999999
Q ss_pred ccCCCCCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeecccc----cCCCCcc
Q 023511 83 ETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVY----AEGPARP 158 (281)
Q Consensus 83 ~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s~----~~~~~~~ 158 (281)
+++++. ++.+.++++.|+. ++++++|++++|+|++.||++|..++++|.. +++|||++|.++. .++.+..
T Consensus 126 ~~~~~~-~~~a~~v~~~LG~---~~~~~~dv~~~Ca~~~~aL~~A~~~l~~g~~--~~vLVv~~e~~s~~~~~~d~~~~~ 199 (379)
T PLN02326 126 SSPDDL-FGSAPQVQAALGC---TNALAFDLTAACSGFVLGLVTAARFIRGGGY--KNVLVIGADALSRYVDWTDRGTCI 199 (379)
T ss_pred CCCCcc-CcHHHHHHHHhCC---CCCceeeccccchHHHHHHHHHHHHHHcCCC--CEEEEEEechhcCCCCccccCceE
Confidence 988874 5678888887765 4688999999999999999999999999965 9999999999872 2334567
Q ss_pred ccCcceEEEEEccCCC--ccccccccccccCCcccccccCCCC-------------cccCCCCcc------cHHHHHHHH
Q 023511 159 TGGAAAVVMLVGPDAP--VAFESKLRGSHMSHAYDFYKPNLAS-------------EYPVVDGKL------SQTCYLMAL 217 (281)
Q Consensus 159 ~fGDGAaA~ll~~~~~--~~i~~~~~~s~~~~~~~~~~p~~~~-------------~~~~~~~~~------~~~~~~~~~ 217 (281)
+|||||+|+||++++. .++....+.+++.....+..+..+. .++.....+ ....|..++
T Consensus 200 lfGDGAaAvlL~~~~~~~~~i~~~~~~t~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~ 279 (379)
T PLN02326 200 LFGDGAGAVVLQACDDDEDGLLGFDMHSDGNGHKHLHATFKGEDDDSSGGNTNGVGDFPPKKASYSCIQMNGKEVFKFAV 279 (379)
T ss_pred EEcceeEEEEEEEcCCCCCceEEEEEEEcCCCCCeEEecCCCCcccccccccccccccccccccccceEecCHHHHHHHH
Confidence 9999999999998653 2444444455544332222221111 011001111 134555555
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCcEEecCCCChhHHHHHHHhccchhhhhcCCCccccccC
Q 023511 218 DTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNARLPSFLHLS 279 (281)
Q Consensus 218 ~~~~~~~~~~~~~l~~~g~~~~did~~i~Hq~n~~i~~~~~~~lg~~~~~~~~~~~~~~~~~ 279 (281)
+.+.+.+. +.|+++|++++|||+|++||+|.++++.+.++||+++++.....++|||++
T Consensus 280 ~~~~~~i~---~~L~~~gl~~~dId~~v~Hq~n~~~~~~~~~~Lgl~~ek~~~~l~~~GNt~ 338 (379)
T PLN02326 280 RCVPQVIE---SALQKAGLTAESIDWLLLHQANQRIIDAVAQRLGIPPEKVISNLANYGNTS 338 (379)
T ss_pred HHHHHHHH---HHHHHcCCCHHHCCEEEECCCCHHHHHHHHHHcCCCHHHeeecHhhcCcHH
Confidence 55555554 468899999999999999999999999999999999998877789999975
No 12
>TIGR00748 HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase, putative. Thus, although there is no experimental evidence supporting this name, the bioinformatics-based conclusion appears to be sound.
Probab=100.00 E-value=1.4e-41 Score=312.16 Aligned_cols=263 Identities=27% Similarity=0.376 Sum_probs=206.9
Q ss_pred eeEEeEEEEEcCCcccchhHHHhhhCCCCceeeeecCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecc
Q 023511 4 NVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSE 83 (281)
Q Consensus 4 ~v~I~~ig~~lP~~~v~~~~~~~~~~~~~~~~~~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~ 83 (281)
+++|.++|+|+|+++++|+++.+.++.+++|+..++|.++|+++++++++.+|+++|+++||+++|++|+|||+||++|+
T Consensus 1 ~~~I~g~g~~lP~~~v~n~~l~~~~~~~~~~i~~~~Gi~~r~v~~~~~~~~~la~~Aa~~aL~~agl~~~dID~li~~s~ 80 (345)
T TIGR00748 1 MAGIVGYGAYIPMYRIKVEEIARVWGKDPESISNGLPVEEKAVPGLDEDTATIGVEAARNALKRAKIDPKDIGAVYVGSE 80 (345)
T ss_pred CccEEEEEEeCCCeeecHHHHHHHhCCCHhHeeeccceeeeecCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEec
Confidence 36899999999999999999999999899999877777777799899999999999999999999999999999999999
Q ss_pred cCCCCCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeecccccCC-CCccccCc
Q 023511 84 TVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEG-PARPTGGA 162 (281)
Q Consensus 84 t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s~~~~-~~~~~fGD 162 (281)
++++..|+.+.++++.|++. +++.++|++++|+|+++||++|..++++|.+ +++|||++|..+..+. ...++|||
T Consensus 81 ~~~~~~p~~a~~v~~~LGl~--~~~~~~dv~~aC~g~~~al~~A~~~i~sg~~--~~vLVv~~d~~~~~~~~~~~~~~GD 156 (345)
T TIGR00748 81 SHPYAVKPTATIVAEAIGAT--PDLTAADLEFACKAGTAGIQACMGLVASGMI--KYGLAIGADTAQGAPGDALEYTAGA 156 (345)
T ss_pred CCCccccchHHHHHHHcCCC--CCceEEEHHHhHHHHHHHHHHHHHHHHcCCC--CEEEEEEEeecccCCCccCcccCCC
Confidence 99988899999888888763 3578999999999999999999999999966 9999999999874332 34678999
Q ss_pred ceEEEEEccCCCc-cccccccccccCCcccccccCCCCcccCCCCcccH-HHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 023511 163 AAVVMLVGPDAPV-AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQ-TCYLMALDTCYKCLCSKYEKLEGKQFSLSN 240 (281)
Q Consensus 163 GAaA~ll~~~~~~-~i~~~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~~~d 240 (281)
||+|+||++.+.. .+.... +.....++++++. +..++...+.+.. ..+.... .+.+. +.|+++|++++|
T Consensus 157 GAaA~vl~~~~~~~~~~~~~--~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~L~~~gl~~~d 227 (345)
T TIGR00748 157 GGAAYIIGEKNTVAYFEGTY--SYTTDTPDFWRRE-GEPYPRHGGRFTGEPAYFHHV---VTAAK---GLMEKLGLTPED 227 (345)
T ss_pred ceEEEEEccCCcceEeeccc--ceecccccccccC-CCcCCCcCCeecChHHHHHHH---HHHHH---HHHHHcCCCHHH
Confidence 9999999976532 332211 1111122344432 2222222222221 1222222 23332 357889999999
Q ss_pred CcEEecCCCChhHHHHHHHhccchhhhhcCCC--ccccccC
Q 023511 241 ADYFVFHSPYNKLVQKSFARLLFNDFMRNARL--PSFLHLS 279 (281)
Q Consensus 241 id~~i~Hq~n~~i~~~~~~~lg~~~~~~~~~~--~~~~~~~ 279 (281)
||+|++||+|.+|++.+.++||+.+++..... ++|||++
T Consensus 228 id~~i~Hq~~~~~~~~~~~~lgl~~ek~~~~~~~~~~GNt~ 268 (345)
T TIGR00748 228 FDYAVFHQPNGKFYLVAARMLGFPKEQVKPGLLTPRIGNTY 268 (345)
T ss_pred cCEEEeCCCChHHHHHHHHHcCCCHHHeeccccccccCchh
Confidence 99999999999999999999999998877654 7999975
No 13
>TIGR01835 HMG-CoA-S_prok 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade. This clade of hydroxymethylglutaryl-CoA (HMG-CoA) synthases is found in a limited spectrum of mostly gram-positive bacteria which make isopentenyl pyrophosphate (IPP) via the mevalonate pathway. This pathway is found primarily in eukaryotes and archaea, but the bacterial homologs are distinct, having aparrently diverged after being laterally transferred from an early eukaryote. HMG-CoA synthase is the first step in the pathway and joins acetyl-CoA with acetoacetyl-CoA with the release of one molecule of CoA. The Borellia sequence may have resulted from a separate lateral transfer event.
Probab=100.00 E-value=1.3e-41 Score=315.92 Aligned_cols=246 Identities=30% Similarity=0.467 Sum_probs=208.4
Q ss_pred eEEeEEEEEcCCcccchhHHHhhhCCCCceeeeecCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEeccc
Q 023511 5 VGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSET 84 (281)
Q Consensus 5 v~I~~ig~~lP~~~v~~~~~~~~~~~~~~~~~~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t 84 (281)
|+|.++++|+|+++++++++++..|.+++|+..++|++++++++++|++.+|+++|+++||+++ +|++||+||++|+|
T Consensus 1 iGI~~i~~y~P~~~v~~~ela~~~g~~~~~~~~g~G~~~~~~~~~~ed~~~la~~Aa~~aL~~a--~~~~Id~li~~t~s 78 (379)
T TIGR01835 1 IGIDKISFFTPQNYLDMTALAEARGVDPEKFHIGIGQKKMAVPPIDEDIVTMAASAAKPILDRN--DKQKIDMVIFGTES 78 (379)
T ss_pred CCEeEEEEECCCEEeeHHHHHHHhCCCHHHHHhhcCceEEeeCCCCCCHHHHHHHHHHHHHHhC--CHhhCCEEEEEeCC
Confidence 5899999999999999999999999999999889999998899999999999999999999998 89999999999999
Q ss_pred CCCCCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeecccccCC-CCccccCcc
Q 023511 85 VIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEG-PARPTGGAA 163 (281)
Q Consensus 85 ~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s~~~~-~~~~~fGDG 163 (281)
+++..|+++.+|++.|++. +++.++|+.++|+|++.||++|.+++++|.. ++||||++|..++... ....+||||
T Consensus 79 ~~~~~~s~a~~v~~~Lgl~--~~~~~~dv~~aC~gg~~aL~~A~~~i~s~~~--~~aLVv~~D~a~~~~~~~~~~~~GdG 154 (379)
T TIGR01835 79 GIDQSKAAAVYVHGLLGLQ--PFCRSFELKQACYGATAALQMAKGHVALSPD--RKVLVIASDIAKYGLESPGEPTQGAG 154 (379)
T ss_pred CCCCCCCHHHHHHHHhCCC--CCceEEEeccccHHHHHHHHHHHHHHHcCCC--CeEEEEEeehhhcccCCCCCccccCc
Confidence 9998999999999998864 3588999999999999999999999999954 9999999999887643 447899999
Q ss_pred eEEEEEccCCCc-cccccccccccCCcccccccCCCCcccCCCCcccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCc
Q 023511 164 AVVMLVGPDAPV-AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNAD 242 (281)
Q Consensus 164 AaA~ll~~~~~~-~i~~~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~did 242 (281)
|+|+||++++.. .+... ...++.+..++|+|.+ ..++.++++++...|...+..+++.+ |++.|++++|||
T Consensus 155 A~A~Ll~~~~~i~~~~~~-~~~~t~~~~df~~p~~-~~~~~v~g~~s~~~y~~~~~~~~~~~------l~~~g~~~~did 226 (379)
T TIGR01835 155 AVAMLVSADPKLLAINED-SVLYTDDIMDFWRPNY-STTALVDGQYSNEQYLNAFENAWNDY------AKRTGLSLADFA 226 (379)
T ss_pred cEEEEEecCCCeeEEecc-ceeeecCCCCccCCCC-CCceeECcHHHHHHHHHHHHHHHHHH------HHHhCCCHHHcC
Confidence 999999987642 22111 1244556678888864 45666777777778888877777766 567999999999
Q ss_pred EEecCCCChhHHHHH----HHhccch
Q 023511 243 YFVFHSPYNKLVQKS----FARLLFN 264 (281)
Q Consensus 243 ~~i~Hq~n~~i~~~~----~~~lg~~ 264 (281)
+|++||+|.+|..+. .+++++.
T Consensus 227 ~~i~H~p~~~~~~k~~~~~l~~~~~~ 252 (379)
T TIGR01835 227 AFCFHVPFTKMGLKALRHILKKNYED 252 (379)
T ss_pred EEEECCCCCcHHHHHHHHHHhhcccc
Confidence 999999999996544 4455554
No 14
>PRK06840 hypothetical protein; Validated
Probab=100.00 E-value=4.5e-41 Score=308.24 Aligned_cols=270 Identities=16% Similarity=0.110 Sum_probs=211.6
Q ss_pred CCceeEEeEEEEEcCCcccchhHHHhhhCCCCceeeeecCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEEE
Q 023511 1 MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEV 80 (281)
Q Consensus 1 ~~~~v~I~~ig~~lP~~~v~~~~~~~~~~~~~~~~~~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~ 80 (281)
|+|+++|.++++|+|+++++|+++++..+.+.+++...+|.++++++.++++..+|+.+|+++||+++|++|+|||+||+
T Consensus 1 ~~~~v~I~~~~~~lP~~~v~~~~l~~~~g~~~~~~~~~~Gi~~r~~~~~~~~~~~la~~Aa~~aL~~ag~~~~dId~li~ 80 (339)
T PRK06840 1 MEMNVGIVGTGVYLPKDVMTAEEIAEKTGIPEEVVIEKFGIYEKPVPGPEDHTSDMAIAAAKPALKQAGVDPAAIDVVIY 80 (339)
T ss_pred CCCceEEEEEEEeCCCcccCHHHHHHHhCCCHHHHhhhcCcceEeeCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 68999999999999999999999999999888887756666666688888999999999999999999999999999997
Q ss_pred ecc-cCCCCCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHHHHHh-CCCCCCeEEEEEeecccc----cCC
Q 023511 81 GSE-TVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVES-SSWDGRYGLVVCTDSAVY----AEG 154 (281)
Q Consensus 81 ~s~-t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~~l~~-g~~~~~~aLVV~~e~~s~----~~~ 154 (281)
+++ ++++..|++++++++.+++ +++.++|++++|+|+++||.+|..++++ |.. +++|||++|..+. .++
T Consensus 81 ~~~~~~~~~~p~~a~~l~~~lGl---~~~~~~~v~~~C~~~~~al~~A~~~l~~~g~~--~~~Lvv~~~~~s~~~~~~~~ 155 (339)
T PRK06840 81 IGSEHKDYPVWSSAPKIQHEIGA---KNAWAFDIMAVCASFPIALKVAKDLLYSDPSI--ENVLLVGGYRNSDLVDYDNP 155 (339)
T ss_pred eccCCCCCCCCchHHHHHHHhCC---CCcccccccccchHHHHHHHHHHHHHhcCCCc--cEEEEEeecccccccCcCCC
Confidence 654 5677789999988888875 4578999999999999999999999999 755 8999999998762 222
Q ss_pred CCc--cccCcceEEEEEccCCC-ccccccccccccCCcccccccCCCCcccCCCC-----cc-----cHHHHHHHH----
Q 023511 155 PAR--PTGGAAAVVMLVGPDAP-VAFESKLRGSHMSHAYDFYKPNLASEYPVVDG-----KL-----SQTCYLMAL---- 217 (281)
Q Consensus 155 ~~~--~~fGDGAaA~ll~~~~~-~~i~~~~~~s~~~~~~~~~~p~~~~~~~~~~~-----~~-----~~~~~~~~~---- 217 (281)
.+. .+|||||+|+||++++. .+++.....+++..+..+..|.++.+.|.... .+ ....+...+
T Consensus 156 ~~~~~~~~GDgAaA~ll~~~~~~~~il~~~~~t~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (339)
T PRK06840 156 RTRFMFNFAAGGSAALLKKDAGKNRILGSAIITDGSFSEDVRVPAGGTKQPASPETVENRQHYLDVIDPESMKERLDEVS 235 (339)
T ss_pred CeeeeccCCCceeEEEEEecCCCCceEEEEEEEcCCccceEEecCCCcCCCCcccccccccceEEEcCcHHHHHHhHhhH
Confidence 233 34799999999998765 35665555566665555555655554332110 00 012232222
Q ss_pred -HHHHHHHHHHHHHhhcCCCCCCCCcEEecCCCChhHHHHHHHhccchhhhhcCCCccccccC
Q 023511 218 -DTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNARLPSFLHLS 279 (281)
Q Consensus 218 -~~~~~~~~~~~~~l~~~g~~~~did~~i~Hq~n~~i~~~~~~~lg~~~~~~~~~~~~~~~~~ 279 (281)
..+.+.+. ++|+++|++++|||+|++||+|.++++.+.++||+.+++. ...++|+|++
T Consensus 236 ~~~~~~~i~---~~L~~~gl~~~did~~~~h~~~~~~~~~~~~~Lgl~~~~~-~~~~~~Gn~~ 294 (339)
T PRK06840 236 IPNFLKVIR---EALRKSGYTPKDIDYLAILHMKRSAHIALLEGLGLTEEQA-IYLDEYGHLG 294 (339)
T ss_pred HHHHHHHHH---HHHHHcCCCHHHCCEEEECCcCHHHHHHHHHHcCCCHHHe-EeHHhccchh
Confidence 12223333 4688999999999999999999999999999999998886 4688999975
No 15
>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.
Probab=100.00 E-value=4.4e-40 Score=298.77 Aligned_cols=268 Identities=19% Similarity=0.177 Sum_probs=214.2
Q ss_pred eeEEeEEEEEcCCcccchhHHHhhhCCCCceeeeecCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecc
Q 023511 4 NVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSE 83 (281)
Q Consensus 4 ~v~I~~ig~~lP~~~v~~~~~~~~~~~~~~~~~~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~ 83 (281)
+++|.++++|+|+++++++++.+.++.+.+++...+|.++++++.++++..+|+.+|+++||+++|+++++||.||++|+
T Consensus 1 ~~~I~~i~~~lP~~~~~~~~~~~~~~~~~~~~~~~~Gi~~r~~~~~~~~~~~la~~A~~~al~~ag~~~~~Id~li~~~~ 80 (320)
T cd00830 1 NARILGIGSYLPERVVTNDELEKRLDTSDEWIRTRTGIRERRIADPGETTSDLAVEAAKKALEDAGIDADDIDLIIVATS 80 (320)
T ss_pred CCEEEEEEEECCCcEEcHHHHHHHcCCCHHHhhhccCceEEeeCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcC
Confidence 47899999999999999999999998888877756666666688888999999999999999999999999999999999
Q ss_pred cCCCCCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeecccc----cCCCCccc
Q 023511 84 TVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVY----AEGPARPT 159 (281)
Q Consensus 84 t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s~----~~~~~~~~ 159 (281)
++++..|+.+.+++..+++ +++++++++++|++++.||..|..++++|.. +++|||++|.++. .++....+
T Consensus 81 ~~~~~~~~~~~~l~~~lg~---~~~~~~~v~~~C~s~~~al~~A~~~i~~g~~--~~vLvv~~e~~s~~~~~~~~~~~~~ 155 (320)
T cd00830 81 TPDYLFPATACLVQARLGA---KNAAAFDINAACSGFLYGLSTAAGLIRSGGA--KNVLVVGAETLSRILDWTDRSTAVL 155 (320)
T ss_pred CCCCCCCcHHHHHHHHhCC---CCCcEeeccccchHHHHHHHHHHHHHHcCCC--CEEEEEEehhhccccCcccCCceEE
Confidence 9988789999988888876 3578999999999999999999999999965 9999999999872 23345789
Q ss_pred cCcceEEEEEccCCC-ccccccccccccCCcccccccCCCCcccCCC----Cc----ccHHHHHHHHHHHHHHHHHHHHH
Q 023511 160 GGAAAVVMLVGPDAP-VAFESKLRGSHMSHAYDFYKPNLASEYPVVD----GK----LSQTCYLMALDTCYKCLCSKYEK 230 (281)
Q Consensus 160 fGDGAaA~ll~~~~~-~~i~~~~~~s~~~~~~~~~~p~~~~~~~~~~----~~----~~~~~~~~~~~~~~~~~~~~~~~ 230 (281)
|||||+|+||++.+. .+++.....+++.....+..+.++.++|... .. .....+........+.+. +.
T Consensus 156 ~GDgAaA~ll~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---~~ 232 (320)
T cd00830 156 FGDGAGAVVLEATEEDPGILDSVLGSDGSGADLLTIPAGGSRSPFEDAEGGDPYLVMDGREVFKFAVRLMPESIE---EA 232 (320)
T ss_pred EeccceEEEEEecCCCCcEEEEEEEEcCCCCCeEEeCCCCcCCccccccccCccEEEcChHHHHHHHHhhHHHHH---HH
Confidence 999999999998765 3566655566665544444444444333210 00 012333333332333333 45
Q ss_pred hhcCCCCCCCCcEEecCCCChhHHHHHHHhccchhhhhcCCCccccccC
Q 023511 231 LEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNARLPSFLHLS 279 (281)
Q Consensus 231 l~~~g~~~~did~~i~Hq~n~~i~~~~~~~lg~~~~~~~~~~~~~~~~~ 279 (281)
|+++|++++|||+|++||+|.++++++.++||++.++.....+.|||+.
T Consensus 233 l~~~g~~~~di~~~~~h~~~~~~~~~~~~~lgl~~~~~~~~~~~~Gn~~ 281 (320)
T cd00830 233 LEKAGLTPDDIDWFVPHQANLRIIEAVAKRLGLPEEKVVVNLDRYGNTS 281 (320)
T ss_pred HHHcCCCHHHCCEEEECCCCHHHHHHHHHHhCCCHHHhhhhHHhhCcHH
Confidence 7889999999999999999999999999999999988877788899864
No 16
>PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=100.00 E-value=1.2e-39 Score=298.68 Aligned_cols=264 Identities=16% Similarity=0.147 Sum_probs=202.0
Q ss_pred ceeEEeEEEEEcCCcccchhHHHhhh-------CCCCceeeeecCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCc
Q 023511 3 KNVGILAMDIYFPPTCVQQEALEAHD-------GASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQI 75 (281)
Q Consensus 3 ~~v~I~~ig~~lP~~~v~~~~~~~~~-------~~~~~~~~~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dI 75 (281)
.+++|.++|+|+|+++++|+++.+.+ +.+++++...+|.++|++.+++++..+|+.+|+++||+++|++++||
T Consensus 4 ~~v~I~~~g~~lP~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~~~~~~~~~~la~~Aa~~aL~~ag~~~~~I 83 (338)
T PRK09258 4 SNVAILSLAYELAPVVVTSSEIEERLAPLYERLRLPPGQLEALTGIRERRWWPEGTQLSDGAIAAGRKALAEAGIDPSDI 83 (338)
T ss_pred cceEEEEEEecCCCccCcHHHHHHHhhhcccccCCChhHhhhhcCceeEecCCCCCCHHHHHHHHHHHHHHHcCCCHHHC
Confidence 46999999999999999999999864 34556666555555555887889999999999999999999999999
Q ss_pred cEEEEecccCCCCCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeecccc--c-
Q 023511 76 GRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVY--A- 152 (281)
Q Consensus 76 d~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s~--~- 152 (281)
|+||++|+++++..|+++.++++.|++. +++.++|++++|+|++.||++|..++++|.+ ++||||++|.++. +
T Consensus 84 d~li~~s~~~~~~~p~~a~~v~~~lgl~--~~~~~~~v~~~C~~~~~al~~A~~~i~~g~~--~~~Lvv~~e~~s~~~~~ 159 (338)
T PRK09258 84 GLLINTSVCRDYLEPATACRVHHNLGLP--KSCANFDVSNACLGFLNGMLDAANMIELGQI--DYALVVSGESAREIVEA 159 (338)
T ss_pred CEEEEEcCCCCCCCChHHHHHHHHcCCC--CCCceeehhhhhHHHHHHHHHHHHHHHcCCC--CEEEEEEecccchhccc
Confidence 9999999999999999999888888753 2578999999999999999999999999965 9999999999762 1
Q ss_pred -------CCC---------CccccCcceEEEEEccCCCc----cccccccccccCCcccccccCCCCcccCCCCcccHHH
Q 023511 153 -------EGP---------ARPTGGAAAVVMLVGPDAPV----AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTC 212 (281)
Q Consensus 153 -------~~~---------~~~~fGDGAaA~ll~~~~~~----~i~~~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 212 (281)
+.. ...+|||||+|+||++.+.. .++.....++++.. +.... +......++ ...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~GDGA~A~ll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~---~~~ 233 (338)
T PRK09258 160 TIDRLLAPETTREDFAQSFATLTLGSGAAAAVLTRGSLHPRGHRLLGGVTRAATEHH-ELCQG--GRDGMRTDA---VGL 233 (338)
T ss_pred hhhhhccCccchhhhhhccceEEecccceEEEEecCCCCCCcceeeeeeeecCCCcc-ccccc--CccceEEcH---HHH
Confidence 111 14689999999999986431 33332222333321 11111 000000111 223
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCcEEecCCCChhHHHHHHHhccchhhhhcCCCccccccC
Q 023511 213 YLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNARLPSFLHLS 279 (281)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~l~~~g~~~~did~~i~Hq~n~~i~~~~~~~lg~~~~~~~~~~~~~~~~~ 279 (281)
+...++.+.+.+. +.|++.|++++|||+|++||+|.++++.+.++||+++++....+++|||++
T Consensus 234 ~~~~~~~~~~~~~---~~L~~~g~~~~did~~i~H~~~~~~~~~~~~~lgl~~~k~~~~~~~~GN~~ 297 (338)
T PRK09258 234 LKEGVELAVDTWE---AFLAQLGWAVEQVDRVICHQVGAAHTRAILKALGIDPEKVFTTFPTLGNMG 297 (338)
T ss_pred HHHHHHHHHHHHH---HHHHHcCCCHHHCCEEecCCCCHHHHHHHHHHhCCCHHHceehHhhhCCcH
Confidence 3334443334443 457889999999999999999999999999999999999888899999975
No 17
>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III. Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment.
Probab=100.00 E-value=2.1e-39 Score=294.55 Aligned_cols=269 Identities=18% Similarity=0.172 Sum_probs=213.2
Q ss_pred ceeEEeEEEEEcCCcccchhHHHhhhCCCCceeeeecCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEec
Q 023511 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGS 82 (281)
Q Consensus 3 ~~v~I~~ig~~lP~~~v~~~~~~~~~~~~~~~~~~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s 82 (281)
|.++|.++++|+|+++++++++.+.++.++.++....|.++++++.+++++.+|+.+|+++||+++|++|+|||.||+++
T Consensus 1 ~~~~I~~i~~~~P~~~~~~~~~~~~~~~~~~~i~~~~gi~~r~~~~~~~~~~~la~~A~~~al~~agl~~~~Id~~i~~~ 80 (318)
T TIGR00747 1 MYAGILGTGSYLPEKVLTNADLEKMVDTSDEWIVTRTGIKERRIAADDETSSTMGFEAAKRAIENAGISKDDIDLIIVAT 80 (318)
T ss_pred CCCEEEEEEEECCCceecHHHHHHhcCCchHHeecccCceEEEECCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEC
Confidence 46899999999999999999999998877666665566555558888999999999999999999999999999999999
Q ss_pred ccCCCCCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeecccc----cCCCCcc
Q 023511 83 ETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVY----AEGPARP 158 (281)
Q Consensus 83 ~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s~----~~~~~~~ 158 (281)
+++++..|+.+.+++..+++ +++++++++++|++++.||+.|..+|++|.. +++|||++|..+. .++....
T Consensus 81 ~~~~~~~~~~a~~l~~~lGl---~~~~~~~v~~~C~s~~~al~~A~~~i~~g~~--~~~Lvv~~e~~~~~~~~~~~~~~~ 155 (318)
T TIGR00747 81 TTPDHAFPSAACMVQAYLGI---KGIPAFDLSAACAGFIYALSVAKQYIESGKY--KTVLVVGAEKLSSTLDWTDRGTCV 155 (318)
T ss_pred CCCCCCCChHHHHHHHHhCC---CCCcEeehhhhhHHHHHHHHHHHHHHHcCCC--CEEEEEEehhhcCcCCcCCCCeEE
Confidence 99888789999988888875 4578999999999999999999999999965 9999999999762 2234467
Q ss_pred ccCcceEEEEEccCCC-ccccccccccccCCcccccccCCCCcccCCCCc---ccHHHHHHHHHHHHHHHHHHHHHhhcC
Q 023511 159 TGGAAAVVMLVGPDAP-VAFESKLRGSHMSHAYDFYKPNLASEYPVVDGK---LSQTCYLMALDTCYKCLCSKYEKLEGK 234 (281)
Q Consensus 159 ~fGDGAaA~ll~~~~~-~~i~~~~~~s~~~~~~~~~~p~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~ 234 (281)
+|||||+|+||++++. .++......+++.....+..|.++.......+. .....+...++.+.+.+. +.|+++
T Consensus 156 ~~GDGAaA~lL~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~ 232 (318)
T TIGR00747 156 LFGDGAGAVVLGESEDPGGIISTHLGADGTQGEALYLPAGGRPTSGPSPFITMEGNEVFKHAVRKMGDVVE---ETLEAN 232 (318)
T ss_pred EEecceeEEEEeecCCCCcEEEEEEEEcCCCcceEEECCCCcCCCCCCCceEECCHHHHHHHHHHHHHHHH---HHHHHc
Confidence 8999999999998764 345444445555544444555433221111110 113444444444444443 457889
Q ss_pred CCCCCCCcEEecCCCChhHHHHHHHhccchhhhhcCCCccccccC
Q 023511 235 QFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNARLPSFLHLS 279 (281)
Q Consensus 235 g~~~~did~~i~Hq~n~~i~~~~~~~lg~~~~~~~~~~~~~~~~~ 279 (281)
|++++|||||++||+|.++++.+.++||+++++....+++|||+.
T Consensus 233 g~~~~di~~~~~h~~~~~~~~~~~~~lgi~~~k~~~~~~~~Gn~~ 277 (318)
T TIGR00747 233 GLDPEDIDWFVPHQANLRIIEALAKRLELDMSQVVKTVHKYGNTS 277 (318)
T ss_pred CCCHHHCCEEEECCCCHHHHHHHHHHcCCCHHHeeehHhhhCCHH
Confidence 999999999999999999999999999999999888899999974
No 18
>PLN03169 chalcone synthase family protein; Provisional
Probab=100.00 E-value=3.1e-39 Score=300.73 Aligned_cols=263 Identities=15% Similarity=0.145 Sum_probs=194.3
Q ss_pred ceeEEeEEEEEcCCcccchhHHHhhh----CCCCce-------ee--eecCceeeeeCCC--------------------
Q 023511 3 KNVGILAMDIYFPPTCVQQEALEAHD----GASKGK-------YT--IGLGQECMAFCSE-------------------- 49 (281)
Q Consensus 3 ~~v~I~~ig~~lP~~~v~~~~~~~~~----~~~~~~-------~~--~gi~~r~~~~~~~-------------------- 49 (281)
+++.|.|+|+++|+++++|+++.+.+ ..+.++ +. +||..|++....+
T Consensus 20 ~~~~I~gigt~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~ 99 (391)
T PLN03169 20 GKATILALGKAFPSQLVPQEYLVDGYFRDTKCDDPALKEKLERLCKTTTVKTRYVVMSKEILDKYPELATEGTPTIKQRL 99 (391)
T ss_pred CCeEEEEEEeeCCCeecCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCcceeeEeccccchhhCccccccCCCCHHHHH
Confidence 56899999999999999999998852 222333 22 4666666432111
Q ss_pred ---CCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCc-eeeecccccchHHHHHH
Q 023511 50 ---VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDI-EGVDSTNACYGGTAALF 125 (281)
Q Consensus 50 ---~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~-~~~di~~~C~g~~~aL~ 125 (281)
+|++.+|+++|+++||+++|++|+|||+||++|++ ++..|+++++|++.||+.. .+ .+||++.||+||++||.
T Consensus 100 ~~~~e~~~~La~~Aa~~aL~~ag~~~~dId~lI~~t~t-~~~~P~~a~~l~~~LGl~~--~~~~~~d~~~gC~g~~~aL~ 176 (391)
T PLN03169 100 DIANEAVTQMAVEASLACIKEWGRPVSDITHLVYVSSS-EARLPGGDLYLAKQLGLSP--DVQRVMLYFLGCSGGVAGLR 176 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHCCEEEEECcC-CCCCCcHHHHHHHHhCcCC--cceeeecccChhHHHHHHHH
Confidence 56789999999999999999999999999999986 7789999999999988742 34 47999999999999999
Q ss_pred HHHHHHHhCCCCCCeEEEEEeecccc--c--------CCCCccccCcceEEEEEccCCCc----cccccccccccCCccc
Q 023511 126 NCVNWVESSSWDGRYGLVVCTDSAVY--A--------EGPARPTGGAAAVVMLVGPDAPV----AFESKLRGSHMSHAYD 191 (281)
Q Consensus 126 ~A~~~l~~g~~~~~~aLVV~~e~~s~--~--------~~~~~~~fGDGAaA~ll~~~~~~----~i~~~~~~s~~~~~~~ 191 (281)
+|..+++++.. ++||||++|.++. + +..+..+|||||+|+||++++.. .+.. +...+. .
T Consensus 177 ~A~~~~~~~~~--~~vLvv~~e~~s~~~~~~~~~~~~d~~~~~lFGDGAaA~vl~~~~~~~~~~~~~~--l~~~~~---~ 249 (391)
T PLN03169 177 VAKDIAENNPG--SRVLLTTSETTILGFRPPSPDRPYDLVGAALFGDGAAAVIIGADPIPVSESPFFE--LHTAIQ---Q 249 (391)
T ss_pred HHHHHHHhCCC--CeEEEEEEEcChhhccCCCccchhhhhhhhhccCceEEEEEecCCCcccCCcceE--EEeeee---e
Confidence 99999999954 9999999999872 2 11357899999999999986531 1111 111111 1
Q ss_pred ccccCCCCc--ccCCCC----cccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCc--EEecCCCChhHHHHHHHhccc
Q 023511 192 FYKPNLASE--YPVVDG----KLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNAD--YFVFHSPYNKLVQKSFARLLF 263 (281)
Q Consensus 192 ~~~p~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~did--~~i~Hq~n~~i~~~~~~~lg~ 263 (281)
..|..... +..... ....+++......+.+.+. +.|+++|++++||| +|++||+|.+|++.+.++||+
T Consensus 250 -~ip~~~~~~~~~~~~~g~~~~~g~~v~~~~~~~~~~~i~---~~L~~~gl~~~did~~~~v~Hq~n~~il~~v~~~Lgl 325 (391)
T PLN03169 250 -FLPGTEKTIDGRLTEEGINFKLGRELPQKIEDNIEGFCK---KLMKKAGLVEKDYNDLFWAVHPGGPAILNRLEKKLKL 325 (391)
T ss_pred -EcCCCccccCceecCCceEEEECcHHHHHHHHHHHHHHH---HHHHHcCCCCCCCCcceEEecCCCHHHHHHHHHHcCC
Confidence 12321100 001111 1124555555444444444 46889999999999 999999999999999999999
Q ss_pred hhhhhcCC---CccccccC
Q 023511 264 NDFMRNAR---LPSFLHLS 279 (281)
Q Consensus 264 ~~~~~~~~---~~~~~~~~ 279 (281)
.+++..++ .++|||.+
T Consensus 326 ~~ek~~~s~~~l~~~GNts 344 (391)
T PLN03169 326 APEKLECSRRALMDYGNVS 344 (391)
T ss_pred CHHHHHHHHHHHHHhCCch
Confidence 99998764 67888875
No 19
>cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs. PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions.
Probab=100.00 E-value=1.3e-38 Score=294.42 Aligned_cols=263 Identities=18% Similarity=0.167 Sum_probs=191.3
Q ss_pred eEEeEEEEEcCCcccchhHHHhhhCC--CC----------ceee--eecCceeeeeCCC--C------------------
Q 023511 5 VGILAMDIYFPPTCVQQEALEAHDGA--SK----------GKYT--IGLGQECMAFCSE--V------------------ 50 (281)
Q Consensus 5 v~I~~ig~~lP~~~v~~~~~~~~~~~--~~----------~~~~--~gi~~r~~~~~~~--~------------------ 50 (281)
++|.++++|+|+++++|+++.++++. +. +++. .||..|+ +..+ +
T Consensus 2 ~~I~~~~~~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gI~~R~--~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (361)
T cd00831 2 ATILAIGTAVPPHRVPQSELVDFYRRLFSSDHLPELKEKLKRLCAKTGIETRY--LVLPGGEETYAPRPEMSPSLDERND 79 (361)
T ss_pred cEEEEEEEeCCCCcCCHHHhhHHHHhcCChhhhHHHHHHHHHHHhhcceeEEE--EEecCchhhcCCccccCCCcCcchh
Confidence 68999999999999999999998752 22 3444 4666665 4433 2
Q ss_pred ---CCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCceeeecc-cccchHHHHHHH
Q 023511 51 ---EDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDST-NACYGGTAALFN 126 (281)
Q Consensus 51 ---e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~-~~C~g~~~aL~~ 126 (281)
+++.+|+++|+++||+++|++|+|||+||++|+++ +..|+++.+|++.|++. +++.+||++ ++|+|+++||++
T Consensus 80 ~~~~~~~~la~~Aa~~aL~~a~~~~~~Id~li~~s~~~-~~~P~~a~~i~~~lgl~--~~~~~~dv~~~~C~~~~~al~~ 156 (361)
T cd00831 80 IALEEARELAEEAARGALDEAGLRPSDIDHLVVNTSTG-NPTPSLDAMLINRLGLR--PDVKRYNLGGMGCSAGAIALDL 156 (361)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCHHHCCEEEEECCCC-CCCCCHHHHHHHHhCCC--cccchhccccccchhHHHHHHH
Confidence 25899999999999999999999999999999887 67999999999988763 358899998 799999999999
Q ss_pred HHHHHHhCCCCCCeEEEEEeecccc--c--C-CC---CccccCcceEEEEEccCCCcc-ccccccccccCCcccccccCC
Q 023511 127 CVNWVESSSWDGRYGLVVCTDSAVY--A--E-GP---ARPTGGAAAVVMLVGPDAPVA-FESKLRGSHMSHAYDFYKPNL 197 (281)
Q Consensus 127 A~~~l~~g~~~~~~aLVV~~e~~s~--~--~-~~---~~~~fGDGAaA~ll~~~~~~~-i~~~~~~s~~~~~~~~~~p~~ 197 (281)
|.++++++.. ++||||++|.++. + + .. +..+|||||+|+||++++... +....+....... ...|..
T Consensus 157 A~~~~~~~~~--~~aLvv~~e~~s~~~~~~d~~~~~~~~~lfGDgaaA~ll~~~~~~~~~~~~~~~~~~~~~--~~~p~~ 232 (361)
T cd00831 157 AKDLLEANPG--ARVLVVSTELCSLWYRGPDHRSMLVGNALFGDGAAAVLLSNDPRDRRRERPLFELVRAAS--TLLPDS 232 (361)
T ss_pred HHHHHHHCCC--CEEEEEEeecccceeCCCCcHHHhhhhhhccCCceEEEEEcCCCcccccccceeeecccc--eeeecC
Confidence 9999999954 9999999999872 2 2 21 468999999999999876421 1111111111100 011211
Q ss_pred CCc--ccCCCC----cccHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCCCCcEEecCCCChhHHHHHHHhccchhhhhc
Q 023511 198 ASE--YPVVDG----KLSQTCYLMALDTCYKCLCSKYEKLEGK--QFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRN 269 (281)
Q Consensus 198 ~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~~~did~~i~Hq~n~~i~~~~~~~lg~~~~~~~ 269 (281)
+.. +...+. .+...++......+.+.+. +.|+++ |++++|||||++||+|.+|++.+.++||+.+++..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~---~~L~~~~~g~~~~did~~~~H~~~~~i~~~v~~~lgl~~~~~~ 309 (361)
T cd00831 233 EDAMGWHLGEEGLTFVLSRDVPRLVEKNLERVLR---KLLARLGIGLFKLAFDHWCVHPGGRAVLDAVEKALGLSPEDLE 309 (361)
T ss_pred CCceEEEEEcceEEEEeChhHHHHHHHHHHHHHH---HHhccccCCCccccceEEEECCCChHHHHHHHHHcCCCHHHHH
Confidence 100 000011 1122333333333333343 457889 99999999999999999999999999999999876
Q ss_pred CC---CccccccC
Q 023511 270 AR---LPSFLHLS 279 (281)
Q Consensus 270 ~~---~~~~~~~~ 279 (281)
++ .+.|||++
T Consensus 310 ~s~~~l~~~GN~~ 322 (361)
T cd00831 310 ASRMVLRRYGNMS 322 (361)
T ss_pred HHHHHHHHhCCch
Confidence 54 56888875
No 20
>PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=100.00 E-value=6e-38 Score=284.98 Aligned_cols=269 Identities=19% Similarity=0.197 Sum_probs=210.5
Q ss_pred ceeEEeEEEEEcCCcccchhHHHhhhCCCCceeeeecCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEec
Q 023511 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGS 82 (281)
Q Consensus 3 ~~v~I~~ig~~lP~~~v~~~~~~~~~~~~~~~~~~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s 82 (281)
+.++|.++++|+|+++++++++.+..+.+++++....|.++++++.++++..+|+.+|++++|+++|++++|||.+|++|
T Consensus 2 ~~v~I~ai~~~lP~~~~~~~~~~~~~~~~~~~i~~~~gi~~r~~~~~~~~~~~la~~A~~~al~~agl~~~~id~vi~~~ 81 (319)
T PRK09352 2 MYAKILGTGSYLPERVVTNDDLEKMVDTSDEWIVTRTGIKERRIAAPDETTSDLATEAAKKALEAAGIDPEDIDLIIVAT 81 (319)
T ss_pred CceEEEEEEEECCCeEEcHHHHHHHcCCCHHHhhhhcCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEc
Confidence 57999999999999999999999998877666664455555557778899999999999999999999999999999999
Q ss_pred ccCCCCCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeecccc----cCCCCcc
Q 023511 83 ETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVY----AEGPARP 158 (281)
Q Consensus 83 ~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s~----~~~~~~~ 158 (281)
+++++..|+.+.+++..+++ .++++++++++|++++.||..|..+|++|.+ +++||+++|.++. .++....
T Consensus 82 ~~~~~~~~~~~~~i~~~lG~---~~~~~~~v~~~Casg~~al~~A~~~i~~g~~--~~vLvv~~e~~s~~~~~~~~~~~~ 156 (319)
T PRK09352 82 TTPDYAFPSTACLVQARLGA---KNAAAFDLSAACSGFVYALSTADQFIRSGAY--KNVLVIGAEKLSRIVDWTDRSTCV 156 (319)
T ss_pred CCCCCCCchHHHHHHHHhCC---CCCcEeeccccchhHHHHHHHHHHHHHcCCC--CEEEEEEehhhccccCcccCCceE
Confidence 98887788888888887775 4578899999999999999999999999965 9999999999872 2234467
Q ss_pred ccCcceEEEEEccCCCccccccccccccCCcccccccCCCCcccCCCCcc---cHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 023511 159 TGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKL---SQTCYLMALDTCYKCLCSKYEKLEGKQ 235 (281)
Q Consensus 159 ~fGDGAaA~ll~~~~~~~i~~~~~~s~~~~~~~~~~p~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~g 235 (281)
+|||||+|+||++++..++....+.+++.....+..|.++...+...+.+ ....+...+..+.+.+. +.|+++|
T Consensus 157 ~~gDGaaA~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---~~l~~~g 233 (319)
T PRK09352 157 LFGDGAGAVVLGASEEPGILSTHLGSDGSYGDLLYLPGGGSRGPASPGYLRMEGREVFKFAVRELAKVAR---EALEAAG 233 (319)
T ss_pred EEeccceEEEEEEcCCCCeEEEEEEEcCCCCCeEEeCCCCCCCCCCCCceEECCHHHHHHHHHHHHHHHH---HHHHHcC
Confidence 99999999999987643444444455555444444454433333211111 12333333333333333 4578899
Q ss_pred CCCCCCcEEecCCCChhHHHHHHHhccchhhhhcCCCccccccC
Q 023511 236 FSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNARLPSFLHLS 279 (281)
Q Consensus 236 ~~~~did~~i~Hq~n~~i~~~~~~~lg~~~~~~~~~~~~~~~~~ 279 (281)
++++|||||++||+|.++++.+.++||++.++.....+.|||+.
T Consensus 234 ~~~~di~~~~~h~~~~~~~~~~~~~lg~~~~~~~~~~~~~Gn~~ 277 (319)
T PRK09352 234 LTPEDIDWLVPHQANLRIIDATAKKLGLPMEKVVVTVDKYGNTS 277 (319)
T ss_pred CCHHHCCEEEECCCCHHHHHHHHHHhCCCHHHhhhhHHhhCCHH
Confidence 99999999999999999999999999999998766678898874
No 21
>PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=100.00 E-value=2.5e-38 Score=294.01 Aligned_cols=268 Identities=17% Similarity=0.105 Sum_probs=193.7
Q ss_pred ceeEEeEEEEEcCCcccchhHHHhhhCCCC-------ceee--eecCceeeeeCC---CCCCHHHHHHHHHHHHHHHcCC
Q 023511 3 KNVGILAMDIYFPPTCVQQEALEAHDGASK-------GKYT--IGLGQECMAFCS---EVEDVISMSLTAVTNLLEKYKI 70 (281)
Q Consensus 3 ~~v~I~~ig~~lP~~~v~~~~~~~~~~~~~-------~~~~--~gi~~r~~~~~~---~~e~~~~la~~Aa~~aL~~a~l 70 (281)
|+++|.++|+|+|+++++|+++.++++... +|+. +|+.+|++...+ ++++..+|+++|+++||+++|+
T Consensus 1 ~~v~I~gig~~lP~~~v~n~~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~~~~~~~~~~~~~~~La~~A~~~aL~~agi 80 (378)
T PRK06816 1 MNVYITSTGAFLPGEPVSNDEMEAYLGLINGKPSRARRIILRNNGIKTRHYALDPEGRPTHSNAQMAAEAIRDLLDDAGF 80 (378)
T ss_pred CCeEEEeeeecCCCCccCHHHHHHHHhhccCCcHHHHHHHHHhCCCceEEEEECCCCCCCCCHHHHHHHHHHHHHHHcCC
Confidence 579999999999999999999998876421 3444 566666643222 1357899999999999999999
Q ss_pred CcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeeccc
Q 023511 71 DPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV 150 (281)
Q Consensus 71 ~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s 150 (281)
+|+|||+||++|+++++..|+.+.+|++.|++ +++.++|++++|+|+++||++|..++++|.. ++||||++|.+|
T Consensus 81 ~~~dId~li~~s~~~~~~~p~~a~~v~~~Lgl---~~~~~~~v~~~Cas~~~al~~A~~~i~sg~~--~~vLvv~~E~~s 155 (378)
T PRK06816 81 SLGDIELLACGTSQPDQLMPGHASMVHGELGA---PPIEVVSSAGVCAAGMMALKYAYLSVKAGES--RNAVATASELAS 155 (378)
T ss_pred CHHHCCEEEEEECCCCcCChHHHHHHHhhCCC---CCCceeeecCcCHHHHHHHHHHHHHHHCCCC--CEEEEEeEccch
Confidence 99999999999999988889998888887764 4467999999999999999999999999965 999999999987
Q ss_pred c--cC--------------CC---------CccccCcceEEEEEccCCCc-cc-cccc---cccccCCcccccccCCCCc
Q 023511 151 Y--AE--------------GP---------ARPTGGAAAVVMLVGPDAPV-AF-ESKL---RGSHMSHAYDFYKPNLASE 200 (281)
Q Consensus 151 ~--~~--------------~~---------~~~~fGDGAaA~ll~~~~~~-~i-~~~~---~~s~~~~~~~~~~p~~~~~ 200 (281)
. +. +. ..++|||||+|+||++.+.. ++ +... ..+++.+. ..+.+.++..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fGDGA~A~vl~~~~~~~g~~l~~~~~~~~~~~~~~-~~~~~~g~~~ 234 (378)
T PRK06816 156 RWFRASRFEAEEEKLAELEENPEIAFEKDFLRWMLSDGAGAVLLENKPRPDGLSLRIDWIDLRSYAGEL-PVCMYAGAEK 234 (378)
T ss_pred hhhhhhhhhhHHHHhhcCcccCCCCCCCCCCCEeeecccEEEEEEecCCCCCceEEEEEEeeecccccC-ccceecCCcc
Confidence 1 10 11 13479999999999986542 32 1111 12222211 1122111111
Q ss_pred cc---------------CCCCcccH----HHHHHHH-HHHHHHHHHHHHHhhcCCCCCCCCcEEecCCCChhHHHHHHHh
Q 023511 201 YP---------------VVDGKLSQ----TCYLMAL-DTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFAR 260 (281)
Q Consensus 201 ~~---------------~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~l~~~g~~~~did~~i~Hq~n~~i~~~~~~~ 260 (281)
.+ ..++.+.. ....+.+ ..+.+.+. ++|+++|++++|||+|+|||+|.+|++.+.++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---~~L~~~gl~~~DId~~v~Hq~n~~~~~~v~~~ 311 (378)
T PRK06816 235 NEDGSLKGWSDYPPEEAEAASALSLKQDVRLLNENIVVYTIKPLL---ELVDKRNLDPDDIDYFLPHYSSEYFREKIVEL 311 (378)
T ss_pred CCCCCccCcccCCHHHHHhccCchHHhHHHHHHHHhHHHHHHHHH---HHHHHcCCChhhCCEEeeCcccHHHHHHHHHH
Confidence 11 00111111 1111112 22233443 46889999999999999999999999999999
Q ss_pred c-----cchhhhhcCCCccccccC
Q 023511 261 L-----LFNDFMRNARLPSFLHLS 279 (281)
Q Consensus 261 l-----g~~~~~~~~~~~~~~~~~ 279 (281)
| |+..++.-...+.|||.+
T Consensus 312 l~~~~~gl~~~k~~~~~~~~GNt~ 335 (378)
T PRK06816 312 LAKAGFMIPEEKWFTNLATVGNTG 335 (378)
T ss_pred HHhccCCCChhheEEecccccccc
Confidence 8 898888777889999975
No 22
>PLN03171 chalcone synthase-like protein; Provisional
Probab=100.00 E-value=3.3e-37 Score=287.64 Aligned_cols=261 Identities=15% Similarity=0.157 Sum_probs=186.3
Q ss_pred eeEEeEEEEEcCCcccchhHHHhhh-C--CCCc---------eee--eecCceeeeeCCCC-------------------
Q 023511 4 NVGILAMDIYFPPTCVQQEALEAHD-G--ASKG---------KYT--IGLGQECMAFCSEV------------------- 50 (281)
Q Consensus 4 ~v~I~~ig~~lP~~~v~~~~~~~~~-~--~~~~---------~~~--~gi~~r~~~~~~~~------------------- 50 (281)
.++|.|+|+|+|+++++|+++.+.+ . .+++ ||. +||..|+ +..++
T Consensus 22 ~~~I~gigt~~P~~~v~n~~~~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~--~~~~~~~~~~~~~~~~~~~~~~~~ 99 (399)
T PLN03171 22 LAAVLAIGTANPANCVPQDEFPDFYFRATKSDHLTALKDKFKRICQELGVQKRY--LHHTEELLSAHPEFLDHDAPSLDA 99 (399)
T ss_pred CcEEEEEEeeCCCcccCHHHHHHHHHHHhcccccHHHHHHHHHHHHhcCCCcee--EeccccccccCccccccCCCCHHH
Confidence 4789999999999999999999873 2 2233 344 5666666 44433
Q ss_pred ------CCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCc-eeeecccccchHHHH
Q 023511 51 ------EDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDI-EGVDSTNACYGGTAA 123 (281)
Q Consensus 51 ------e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~-~~~di~~~C~g~~~a 123 (281)
+++.+|+++|+++||+++|++|+|||+||++|+|+++ .|+++.++++.|++.. .+ .++++.+||+||++|
T Consensus 100 r~~~~~~~a~~la~~Aa~~aL~~ag~~~~dId~li~~t~t~~~-~P~~a~~v~~~LGl~~--~~~~~~~~~~gC~g~~~a 176 (399)
T PLN03171 100 RLDIAADAVPELAAEAAKKAIAEWGRPAADITHLVVTTNSGAH-IPGVDFRLVPLLGLRP--SVRRTMLHLNGCFAGAAA 176 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCC-CCchHHHHHHHhCCCc--ccceeeccCCccHHHHHH
Confidence 4799999999999999999999999999999999987 8999999999998743 22 257777899999999
Q ss_pred HHHHHHHHHhCCCCCCeEEEEEeeccc--cc--CCCC------ccccCcceEEEEEccCCCc------cccccccccccC
Q 023511 124 LFNCVNWVESSSWDGRYGLVVCTDSAV--YA--EGPA------RPTGGAAAVVMLVGPDAPV------AFESKLRGSHMS 187 (281)
Q Consensus 124 L~~A~~~l~~g~~~~~~aLVV~~e~~s--~~--~~~~------~~~fGDGAaA~ll~~~~~~------~i~~~~~~s~~~ 187 (281)
|++|.++++++.. ++||||++|.+| ++ ++.. ..+|||||+|+||++.+.. .+........+.
T Consensus 177 L~~A~~li~~~~~--~~vLVv~~e~~s~~~~~~d~~~~~~~v~~~LFGDGAaA~vl~~~~~~~~~~~~~l~~~~~~~~p~ 254 (399)
T PLN03171 177 LRLAKDLAENNRG--ARVLVVAAEITLLLFNGPDEGCFQTLLNQGLFGDGAAAVIVGADADAAERPLFEIVSAAQAIIPE 254 (399)
T ss_pred HHHHHHHHHhCCC--CeEEEEEEeccccccCCCCcccHHhhhccccccCccEEEEEecCCCCCCCCceEEEEeeeEEecC
Confidence 9999999999954 999999999988 22 2221 5799999999999986531 232221111221
Q ss_pred Ccccc--cccCCCCcccCCCCcccHHHHHHHHHHHHHHHHHHHHHh-----hcCCCCCCCCcEEecCCCChhHHHHHHHh
Q 023511 188 HAYDF--YKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKL-----EGKQFSLSNADYFVFHSPYNKLVQKSFAR 260 (281)
Q Consensus 188 ~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~g~~~~did~~i~Hq~n~~i~~~~~~~ 260 (281)
....+ ..+.++. .+++........+...++.+.+ +.| ...|++.+||+|+ +||+|.+|++.+.++
T Consensus 255 ~~~~~~~~~~~~g~-----~~~~~~~~vp~~i~~~l~~~l~--~~l~~~~~~~~g~~~~di~~~-~Hq~~~~il~~v~~~ 326 (399)
T PLN03171 255 SDDAINMHFTEGGL-----DGNIGTRQVPGLIGDNIERCLL--DAFAPLLGGDGGAEWNDLFWA-VHPGSSAILDQVDAA 326 (399)
T ss_pred CchheEEEEEcCCc-----eEEECchhHHHHHHHHHHHHHH--HHHHhhcccccCCCcccceEE-EcCCcHHHHHHHHHH
Confidence 11111 1111111 1122222223333333333221 111 2358889999877 599999999999999
Q ss_pred ccchhhhhcCC---CccccccC
Q 023511 261 LLFNDFMRNAR---LPSFLHLS 279 (281)
Q Consensus 261 lg~~~~~~~~~---~~~~~~~~ 279 (281)
||+.+++..++ .++|||.+
T Consensus 327 Lgl~~ek~~~s~~~l~~yGNts 348 (399)
T PLN03171 327 LGLEPEKLAASRRVLSDYGNMF 348 (399)
T ss_pred cCCCHHHhHHHHHHHHHhCcch
Confidence 99999998754 78899875
No 23
>PLN03172 chalcone synthase family protein; Provisional
Probab=100.00 E-value=2.5e-36 Score=280.84 Aligned_cols=263 Identities=15% Similarity=0.181 Sum_probs=191.2
Q ss_pred eeEEeEEEEEcCCcccchhHHHhhhC-------CCC-ce-ee-----eecCceeeeeCC------CC-------------
Q 023511 4 NVGILAMDIYFPPTCVQQEALEAHDG-------ASK-GK-YT-----IGLGQECMAFCS------EV------------- 50 (281)
Q Consensus 4 ~v~I~~ig~~lP~~~v~~~~~~~~~~-------~~~-~~-~~-----~gi~~r~~~~~~------~~------------- 50 (281)
...|.++|+.+|++.++++|+.+.+. .+. +. +. +||..|+..+.+ ++
T Consensus 16 ~~~I~~igta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~~~~~~~~~p~~~~r~ 95 (393)
T PLN03172 16 PATILAIGKATPANCVSQADYPDYYFRITNSEHMTELKEKFKRMCDKSMIKKRYMHLTEEILKENPNMCAYMAPSLDARQ 95 (393)
T ss_pred CeEEEEEEecCCCccccHHHHHHHHHHHhcccCchHHHHHHHHHHHhcCCCceeEeccchhhhhCccccccCCCCHHHHH
Confidence 46799999999999999999887642 111 11 21 688888764421 00
Q ss_pred ----CCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCcee-eecccccchHHHHHH
Q 023511 51 ----EDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEG-VDSTNACYGGTAALF 125 (281)
Q Consensus 51 ----e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~-~di~~~C~g~~~aL~ 125 (281)
+.+.+|+++|+++||+++|++++|||+||++|+|+.. .|+++.+|++.||+. +.+.+ +|++.||+||++||.
T Consensus 96 ~~~~~~a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~-~P~~a~~l~~~LGl~--~~~~~~~~~~~gC~g~~~aL~ 172 (393)
T PLN03172 96 DMVVVEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVD-MPGADYQLTKLLGLK--PSVKRFMMYQQGCFAGGTVLR 172 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCc-CchHHHHHHHHhCCC--CCceEEeeeCCchHHHHHHHH
Confidence 1267999999999999999999999999999999865 899999999999874 33544 688999999999999
Q ss_pred HHHHHHHhCCCCCCeEEEEEeeccc--cc---CC-----CCccccCcceEEEEEccCCCcc-------cccccc--cccc
Q 023511 126 NCVNWVESSSWDGRYGLVVCTDSAV--YA---EG-----PARPTGGAAAVVMLVGPDAPVA-------FESKLR--GSHM 186 (281)
Q Consensus 126 ~A~~~l~~g~~~~~~aLVV~~e~~s--~~---~~-----~~~~~fGDGAaA~ll~~~~~~~-------i~~~~~--~s~~ 186 (281)
+|..+++++. .++||||++|.+| +. ++ .+..+|||||+|+||++++..+ +.+... ...+
T Consensus 173 ~A~~~~~~~~--~~~vLVV~~E~~S~~~~~~~d~~~~~~v~~~LFGDGAaAvVl~~~~~~~~~~~~~~i~~~~~~~~~~t 250 (393)
T PLN03172 173 LAKDLAENNA--GSRVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAVIIGADPDTKIERPLFEIVSAAQTILPDS 250 (393)
T ss_pred HHHHHHHcCC--CCeEEEEEEehhhhhhcccccccHHhhhccchhcCceEEEEEecCCCCcccCceeEEeeeccEEecCC
Confidence 9999999995 4999999999988 32 22 1478999999999999864321 221100 0011
Q ss_pred CCcccccccCCCCcccCCCCcccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcEEecCCCChhHHHHHHHhccchhh
Q 023511 187 SHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDF 266 (281)
Q Consensus 187 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~did~~i~Hq~n~~i~~~~~~~lg~~~~ 266 (281)
+..........|.. ..++.+++....+.+.+.+. +.|++.|++..|||+|++||+|.+|++.+.++||+.++
T Consensus 251 ~~~~~~~i~~~G~~-----~~l~~~vp~~~~~~i~~~~~---~~L~~~gl~~~di~~~~~Hqgg~~Il~~v~~~Lgl~~~ 322 (393)
T PLN03172 251 DGAIDGHLREVGLT-----FHLLKDVPGLISKNIEKSLV---EAFAPIGINDWNSIFWIAHPGGPAILDQVEIKLDLKEE 322 (393)
T ss_pred cccccceEEcCCcE-----EEEechHHHHHHHHHHHHHH---HHhhhcCCCccccceEEecCCcHHHHHHHHHHcCCCHH
Confidence 11111110001111 01223444444444444443 35788999999999999999999999999999999999
Q ss_pred hhcCC---CccccccC
Q 023511 267 MRNAR---LPSFLHLS 279 (281)
Q Consensus 267 ~~~~~---~~~~~~~~ 279 (281)
+..++ .++|||.|
T Consensus 323 ~~~~s~~vl~~yGNtS 338 (393)
T PLN03172 323 KLRATRHVLSDYGNMS 338 (393)
T ss_pred HHHHHHHHHHHhCccH
Confidence 99987 77888875
No 24
>PLN03168 chalcone synthase; Provisional
Probab=100.00 E-value=2.6e-36 Score=280.67 Aligned_cols=266 Identities=15% Similarity=0.183 Sum_probs=189.7
Q ss_pred eeEEeEEEEEcCCcccchhHHHhhhC-C-----CC--c-eee-----eecCceeeeeCCC--------------------
Q 023511 4 NVGILAMDIYFPPTCVQQEALEAHDG-A-----SK--G-KYT-----IGLGQECMAFCSE-------------------- 49 (281)
Q Consensus 4 ~v~I~~ig~~lP~~~v~~~~~~~~~~-~-----~~--~-~~~-----~gi~~r~~~~~~~-------------------- 49 (281)
...|.++|+..|++.++++++.+++. . .+ + ++. +||..|+..+..+
T Consensus 15 ~~~i~~i~ta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~~~~~~~~~ps~~~r~ 94 (389)
T PLN03168 15 PACVLGIGTAVPPAEFLQSEYPDFFFNITNCGEKEALKAKFKRICDKSGIRKRHMFLTEEVLKANPGICTYMEPSLNVRH 94 (389)
T ss_pred CeEEEEEeccCCCcccCHHHHHHHHHHhccccCcHHHHHHHHHHHHhcCCCeeeeeccccchhhCcccccccCCCHHHHH
Confidence 47899999999999999999887642 1 11 1 122 6888887644220
Q ss_pred ---CCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCc-eeeecccccchHHHHHH
Q 023511 50 ---VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDI-EGVDSTNACYGGTAALF 125 (281)
Q Consensus 50 ---~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~-~~~di~~~C~g~~~aL~ 125 (281)
.+.+.+|+++|+++||+++|++++|||+||++|+|++. .|+++++|++.||+.+ .+ .++|++.||+||++||.
T Consensus 95 ~~~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~-~Ps~a~~l~~~LGl~~--~~~r~~d~~~gC~g~~~aL~ 171 (389)
T PLN03168 95 DIVVVQVPKLAAEAAQKAIKEWGGRKSDITHIVFATTSGVN-MPGADHALAKLLGLKP--TVKRVMMYQTGCFGGASVLR 171 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCC-CccHHHHHHHHhCcCC--cceeeeeeCCccHHHHHHHH
Confidence 02489999999999999999999999999999999965 8999999999988743 23 48999999999999999
Q ss_pred HHHHHHHhCCCCCCeEEEEEeeccc--ccCC--------CCccccCcceEEEEEccCCCccccccccccccCCccccccc
Q 023511 126 NCVNWVESSSWDGRYGLVVCTDSAV--YAEG--------PARPTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKP 195 (281)
Q Consensus 126 ~A~~~l~~g~~~~~~aLVV~~e~~s--~~~~--------~~~~~fGDGAaA~ll~~~~~~~i~~~~~~s~~~~~~~~~~p 195 (281)
+|..+++++. .++|||||+|.+| ++++ .+..+|||||+|+||++++........+...... ....|
T Consensus 172 ~A~~~i~~~~--~~~VLVV~~E~~S~~~~~~~~~~~~~~~~~~LFGDGAaAvvl~~~~~~~~~~~~~~~~~~~--~~~~p 247 (389)
T PLN03168 172 VAKDLAENNK--GARVLAVASEVTAVTYRAPSENHLDGLVGSALFGDGAGVYVVGSDPKPEVEKALFEVHWAG--ETILP 247 (389)
T ss_pred HHHHHHHhCC--CCEEEEEEEehhhhhccCcccccHHHHhccccccCccEEEEEecCCCCccCCcceEEEeee--eEEEc
Confidence 9999999995 4999999999988 3221 2578999999999999864321100111111100 11222
Q ss_pred CC-CC-cccCCCCcc----cHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcEEecCCCChhHHHHHHHhccchhhhhc
Q 023511 196 NL-AS-EYPVVDGKL----SQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRN 269 (281)
Q Consensus 196 ~~-~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~did~~i~Hq~n~~i~~~~~~~lg~~~~~~~ 269 (281)
.. +. .+...+..+ +..++. .+...++.+.+ +.|+..|++..|+++|++||+|.+|++.+.++||+.+++..
T Consensus 248 ~s~~~~~~~~~~~g~~~~l~~~vp~-~i~~~~~~~l~--~~l~~~~~~~~d~~~~v~Hqgg~~Il~~v~~~Lgl~~ek~~ 324 (389)
T PLN03168 248 ESDGAIDGHLTEAGLIFHLMKDVPG-LISKNIEKFLN--EARKCVGSPDWNEMFWAVHPGGPAILDQVEAKLKLTKDKMQ 324 (389)
T ss_pred CCCCccCceEecCceEEEECHHHHH-HHHHHHHHHHH--HHHHhcCCCccccceEEecCCcHHHHHHHHHHcCCCHHHHH
Confidence 11 10 111111111 222222 22233333322 34677888888999999999999999999999999999988
Q ss_pred CC---CccccccC
Q 023511 270 AR---LPSFLHLS 279 (281)
Q Consensus 270 ~~---~~~~~~~~ 279 (281)
++ .++|||.|
T Consensus 325 ~s~~vl~~yGNtS 337 (389)
T PLN03168 325 GSRDILSEFGNMS 337 (389)
T ss_pred HHHHHHHHhCccH
Confidence 76 78888876
No 25
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=100.00 E-value=6.9e-36 Score=277.22 Aligned_cols=262 Identities=15% Similarity=0.106 Sum_probs=190.4
Q ss_pred eeEEeEEEEEcCCcccchhHHHhhhC------------------------CCCceee--eecCceeeeeCCC--------
Q 023511 4 NVGILAMDIYFPPTCVQQEALEAHDG------------------------ASKGKYT--IGLGQECMAFCSE-------- 49 (281)
Q Consensus 4 ~v~I~~ig~~lP~~~v~~~~~~~~~~------------------------~~~~~~~--~gi~~r~~~~~~~-------- 49 (281)
+++|.++|+|+|+++++|+|+.++++ .+.+||. +|+..|+ +..+
T Consensus 2 ~~~I~~~g~~lP~~~v~n~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~--~~~~~~~~~~~~ 79 (372)
T PRK07515 2 NVVISGTGLYTPPESISNEELVASFNAYVERFNAENAAAIAAGEVEALQPSSSEFIEKASGIKSRY--VMDKEGILDPDR 79 (372)
T ss_pred CcEEEEEEeecCCccccHHHHHHHHhhhhhhhcccchhhhccccccccCCCCHHHhhhccCCceEE--EecccccCcccc
Confidence 58999999999999999999987642 1244554 4666666 4321
Q ss_pred ----------C--CCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCceeeeccccc
Q 023511 50 ----------V--EDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNAC 117 (281)
Q Consensus 50 ----------~--e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C 117 (281)
. .+..+|+.+|+++||+++|++++|||.||++|+++++..|+.+.++++.|++. ..+++++.+|
T Consensus 80 ~~~~~~~r~~~~~~~~~~la~~Aa~~aL~~agl~~~~Id~li~~~~~~~~~~p~~a~~v~~~Lgl~----~~~~~v~~aC 155 (372)
T PRK07515 80 MRPRIPERSNDELSIQAEMGVAAARQALARAGRTAEDIDAVIVACSNMQRAYPAMAIEIQQALGIE----GFAFDMNVAC 155 (372)
T ss_pred cCcccccccccchhhHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhcCCC----CcEEEecchh
Confidence 1 14578999999999999999999999999999888888999999888887752 5689999999
Q ss_pred chHHHHHHHHHHHHHhCCCCCCeEEEEEeeccc----ccCCCCccccCcceEEEEEccCCCc------cccccccccccC
Q 023511 118 YGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV----YAEGPARPTGGAAAVVMLVGPDAPV------AFESKLRGSHMS 187 (281)
Q Consensus 118 ~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s----~~~~~~~~~fGDGAaA~ll~~~~~~------~i~~~~~~s~~~ 187 (281)
+|++.||..|.++|++|.+ ++||||++|.++ +.++.+..+|||||+|+||++.+.. .++.....+ .
T Consensus 156 asg~~al~~A~~~i~~g~~--~~vLvv~~e~~s~~~~~~d~~~~~lfGDgAaA~vL~~~~~~~~~~~~~il~~~~~~--~ 231 (372)
T PRK07515 156 SSATFGIQTAANAIRSGSA--RRVLVVNPEICSGHLNFRDRDSHFIFGDVATAVIVERADTATSAGGFEILGTRLFT--Q 231 (372)
T ss_pred HHHHHHHHHHHHHHHcCCC--CEEEEEeeecccccccccCCCCCEEecCccEEEEEeeccccccCCCceEEEEEeec--c
Confidence 9999999999999999965 999999999987 2334567899999999999986421 233332222 1
Q ss_pred CcccccccCCCCcccC-------CCCcc---cHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcEEecCCCChhHHHHH
Q 023511 188 HAYDFYKPNLASEYPV-------VDGKL---SQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKS 257 (281)
Q Consensus 188 ~~~~~~~p~~~~~~~~-------~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~did~~i~Hq~n~~i~~~~ 257 (281)
....+..+. |...+. .+..+ ....+.+.+..+.+.+. ++|+++|++++|||+|++||+|.++++.+
T Consensus 232 ~~~~~~~~~-G~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~---~~L~~~gl~~~dId~~~~Hq~~~~~~d~~ 307 (372)
T PRK07515 232 FSNNIRNNF-GFLNRADPEGIGARDKLFVQEGRKVFKEVCPMVAEHIV---EHLAENGLTPADVKRFWLHQANINMNQLI 307 (372)
T ss_pred cccceecCC-CCCCCCCccccccccceEEeccHHHHHHHHHHHHHHHH---HHHHHcCCCHHHCCEEEECCCCHHHHHHH
Confidence 111111111 110000 00011 12444445555555554 46899999999999999999999999999
Q ss_pred HHh-ccchh--hhhcCCCccccccC
Q 023511 258 FAR-LLFND--FMRNARLPSFLHLS 279 (281)
Q Consensus 258 ~~~-lg~~~--~~~~~~~~~~~~~~ 279 (281)
.++ ||+.. ++.-...++|||++
T Consensus 308 ~~~llg~~~~~~~~~~~~~~~GNt~ 332 (372)
T PRK07515 308 GKKVLGRDATPEEAPVILDEYANTS 332 (372)
T ss_pred HHHhccCCCChhhceEeHHhcCCch
Confidence 998 56543 22233588999975
No 26
>PLN03173 chalcone synthase; Provisional
Probab=100.00 E-value=5.5e-36 Score=278.32 Aligned_cols=262 Identities=17% Similarity=0.214 Sum_probs=190.7
Q ss_pred eeEEeEEEEEcCCcccchhHHHhhhC------CCC--ce-ee-----eecCceeeeeCCC----C---------------
Q 023511 4 NVGILAMDIYFPPTCVQQEALEAHDG------ASK--GK-YT-----IGLGQECMAFCSE----V--------------- 50 (281)
Q Consensus 4 ~v~I~~ig~~lP~~~v~~~~~~~~~~------~~~--~~-~~-----~gi~~r~~~~~~~----~--------------- 50 (281)
.+.|.++|+..|++.++++++.+.+. ..+ +. +. +||..|+..+.++ .
T Consensus 16 ~~~i~~i~ta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~~~~~~~~~p~~~~r~ 95 (391)
T PLN03173 16 PATIMAIGTSTPPNCVDQSTYPDYYFRITNSEHKVELKEKFKRMCEKSMIKKRYMHLTEEILKENPSVCEYMAPSLDARQ 95 (391)
T ss_pred CeEEEEEEccCCCcccCHHHHHHHHHHHhccccchhHHHHHHHHHHhCCCCeeeEeccchhhhhCcccccccCCCHHHHH
Confidence 47899999999999999999887642 111 11 21 6888887544210 0
Q ss_pred ----CCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCce-eeecccccchHHHHHH
Q 023511 51 ----EDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIE-GVDSTNACYGGTAALF 125 (281)
Q Consensus 51 ----e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~-~~di~~~C~g~~~aL~ 125 (281)
+.+.+|+++|+++||+++|++|+|||+||++|+|+.. .|+.+.+|++.||+.+ .+. ++|++.||+||++||+
T Consensus 96 ~~~~~~a~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~-~P~~a~~l~~~LGl~~--~~~~~~~~~~gC~g~~~aL~ 172 (391)
T PLN03173 96 DMVVVEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVD-MPGADYQLTKLLGLRS--SVKRFMMYQQGCFAGGTVLR 172 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCc-ccHHHHHHHHHhCCCc--cceeeehhcCccHHHHHHHH
Confidence 2367999999999999999999999999999999866 7999999999888742 343 5788999999999999
Q ss_pred HHHHHHHhCCCCCCeEEEEEeeccc--cc---CC-----CCccccCcceEEEEEccCCCccccc---ccccc------cc
Q 023511 126 NCVNWVESSSWDGRYGLVVCTDSAV--YA---EG-----PARPTGGAAAVVMLVGPDAPVAFES---KLRGS------HM 186 (281)
Q Consensus 126 ~A~~~l~~g~~~~~~aLVV~~e~~s--~~---~~-----~~~~~fGDGAaA~ll~~~~~~~i~~---~~~~s------~~ 186 (281)
+|.++++++. .++||||++|.+| +. ++ .+..+|||||+|+||++++..++.. ....+ .+
T Consensus 173 ~A~~~~~~~~--~~~vLVV~~E~~S~~~~~~~d~~~~~~v~~~LFGDGAaAvvl~~~~~~~~~~~~~~l~~~~~~~~~~t 250 (391)
T PLN03173 173 LAKDLAENNK--GARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAIIIGSDPVLGVEKPLFELVSAAQTILPDS 250 (391)
T ss_pred HHHHHHHhCC--CCeEEEEEEehhhhhhCCccccchhhhhhhhhhcCceEEEEEeCCCCCCcCCcceEEEeeeeEEecCC
Confidence 9999999984 5999999999988 32 22 2468999999999999754322211 00011 11
Q ss_pred CCcccc-cccCCCCcccCCCCcccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcEEecCCCChhHHHHHHHhccchh
Q 023511 187 SHAYDF-YKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFND 265 (281)
Q Consensus 187 ~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~did~~i~Hq~n~~i~~~~~~~lg~~~ 265 (281)
+..... .... |.. ..++.+++......+.+.+. +.|+++|++.+|||+|++||+|.+|++.+.++||+.+
T Consensus 251 ~~~~~~~i~~~-G~~-----~~l~~~vp~~~~~~~~~~i~---~~L~~~gl~~~di~~~v~Hqgg~~Il~~v~~~LgL~~ 321 (391)
T PLN03173 251 DGAIDGHLREV-GLT-----FHLLKDVPGLISKNVEKSLT---EAFKPLGISDWNSLFWIAHPGGPAILDQVEAKLALKP 321 (391)
T ss_pred ccceeeEEEcC-ceE-----EEEecHHHHHHHHHHHHHHH---HHHHhcCCCccccCeEEECCCcHHHHHHHHHHcCCCh
Confidence 111111 1111 111 01223444444444444443 4578899999999999999999999999999999999
Q ss_pred hhhcCC---CccccccC
Q 023511 266 FMRNAR---LPSFLHLS 279 (281)
Q Consensus 266 ~~~~~~---~~~~~~~~ 279 (281)
++..++ ..+|||.|
T Consensus 322 ekl~~s~~vl~~yGNtS 338 (391)
T PLN03173 322 EKLRATRHVLSEYGNMS 338 (391)
T ss_pred HHHHHHHHHHHHhCcch
Confidence 998887 77888876
No 27
>cd00827 init_cond_enzymes "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes. They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues.
Probab=100.00 E-value=2.6e-35 Score=267.97 Aligned_cols=262 Identities=32% Similarity=0.437 Sum_probs=198.8
Q ss_pred eeEEeEEEEEcCCcccchhHHHhhhCCCCceee--eecCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEe
Q 023511 4 NVGILAMDIYFPPTCVQQEALEAHDGASKGKYT--IGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVG 81 (281)
Q Consensus 4 ~v~I~~ig~~lP~~~v~~~~~~~~~~~~~~~~~--~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~ 81 (281)
.++|.++++|+|+++++++++.+.++.+ ++. .|+++|+ +..++++..+|+.+|++++|+++|++++|||+||++
T Consensus 1 ~v~I~~i~~~lP~~~v~~~~~~~~~~~~--~~~~~~gi~~r~--~~~~~~~~~~l~~~a~~~aL~~ag~~~~~Id~li~~ 76 (324)
T cd00827 1 DVGIEAIGAYLPRYRVDNEELAEGLGVD--PGKYTTGIGQRH--MAGDDEDVPTMAVEAARRALERAGIDPDDIGLLIVA 76 (324)
T ss_pred CccEEEEEecCCceeecHHHHHHHhCCC--cceeeeecceeE--ecCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEE
Confidence 3789999999999999999999998865 444 5666665 676678999999999999999999999999999999
Q ss_pred cccCCCCCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeeccccc---CCCCcc
Q 023511 82 SETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYA---EGPARP 158 (281)
Q Consensus 82 s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s~~---~~~~~~ 158 (281)
+++++...|+.+.+++..+++ +++++++++++|+|++.||.+|..+|++|.. +++|||++|.++.. ......
T Consensus 77 ~~~~~~~~~~~~~~i~~~lg~---~~~~~~~v~~~C~s~~~al~~A~~~i~~g~~--~~vlvv~~e~~~~~~~~~~~~~~ 151 (324)
T cd00827 77 TESPIDKGKSAATYLAELLGL---TNAEAFDLKQACYGGTAALQLAANLVESGPW--RYALVVASDIASYLLDEGSALEP 151 (324)
T ss_pred cCCCCCCCccHHHHHHHHcCC---CCCceeehhhhhHHHHHHHHHHHHHHHcCCC--CEEEEEEEHHhhhcccCCCCccc
Confidence 998887788899988887775 3688999999999999999999999999965 99999999998832 235688
Q ss_pred ccCcceEEEEEccCCC---ccccccccccccCCccccccc--CCCCcccC---CCCccc-----HHHHHHHHHHHHHHHH
Q 023511 159 TGGAAAVVMLVGPDAP---VAFESKLRGSHMSHAYDFYKP--NLASEYPV---VDGKLS-----QTCYLMALDTCYKCLC 225 (281)
Q Consensus 159 ~fGDGAaA~ll~~~~~---~~i~~~~~~s~~~~~~~~~~p--~~~~~~~~---~~~~~~-----~~~~~~~~~~~~~~~~ 225 (281)
+|||||+|+||++.+. .+++.....+++.... .+.+ .++...+. ....+. ...+......+.+.+.
T Consensus 152 ~~gdgaaA~ll~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (324)
T cd00827 152 TLGDGAAAMLVSRNPGILAAGIVSTHSTSDPGYDF-SPYPVMDGGYPKPCKLAYAIRLTAEPAGRAVFEAAHKLIAKVVR 230 (324)
T ss_pred cccCceEEEEEecCcccccCCceeeeeeccccccc-CccceeccCCCcchhhhhhcceeecCCccchHHHHhHHHHHHHH
Confidence 9999999999998775 3555554444443221 0000 00011000 000011 1222222223333333
Q ss_pred HHHHHhhcCCCCCCCCcEEecCCCCh-hHHHHHHHhccchhhhhcCC----CccccccC
Q 023511 226 SKYEKLEGKQFSLSNADYFVFHSPYN-KLVQKSFARLLFNDFMRNAR----LPSFLHLS 279 (281)
Q Consensus 226 ~~~~~l~~~g~~~~did~~i~Hq~n~-~i~~~~~~~lg~~~~~~~~~----~~~~~~~~ 279 (281)
+.|++.|++ +|||+|++||+|. ++++.+.++|+++.++..++ .++|||++
T Consensus 231 ---~~l~~~~~~-~~i~~~~~h~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Gn~~ 285 (324)
T cd00827 231 ---KALDRAGLS-EDIDYFVPHQPNGKKILEAVAKKLGGPPEKASQTRWILLRRVGNMY 285 (324)
T ss_pred ---HHHHHcccc-cccceeeccCchHHHHHHHHHHHccchHhhhccchhhHHHHhCchH
Confidence 357889999 9999999999999 99999999999988887775 67888864
No 28
>PLN03170 chalcone synthase; Provisional
Probab=100.00 E-value=1.8e-35 Score=275.87 Aligned_cols=264 Identities=16% Similarity=0.201 Sum_probs=190.5
Q ss_pred eeEEeEEEEEcCCcccchhHHHhhhC-------CCC-c-eee-----eecCceeeeeCC------C--------------
Q 023511 4 NVGILAMDIYFPPTCVQQEALEAHDG-------ASK-G-KYT-----IGLGQECMAFCS------E-------------- 49 (281)
Q Consensus 4 ~v~I~~ig~~lP~~~v~~~~~~~~~~-------~~~-~-~~~-----~gi~~r~~~~~~------~-------------- 49 (281)
...|.++|+.+|++.++++++.+.+. .+. + ++. +||..|+..+.+ +
T Consensus 20 ~~~i~~i~ta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~~~~~~~~~p~~~~r~ 99 (401)
T PLN03170 20 PATVLAIGTATPANCVHQADYPDYYFRITKSEHMTELKEKFKRMCDKSQIRKRYMHLTEEYLAENPNMCAYMAPSLDARQ 99 (401)
T ss_pred CeEEEEEeecCCCccccHHHHHHHHHHHccccCchhHHHHHHHHHHhCCCCceeEeccccchhhCccccccCCCCHHHHH
Confidence 36799999999999999999887642 111 1 122 688888764421 0
Q ss_pred ---CCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCc-eeeecccccchHHHHHH
Q 023511 50 ---VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDI-EGVDSTNACYGGTAALF 125 (281)
Q Consensus 50 ---~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~-~~~di~~~C~g~~~aL~ 125 (281)
.+.+.+||++|+++||+++|++++|||+||++|+|+.. .|+++.+|++.||+.+ .+ .++|++.||+||++||+
T Consensus 100 ~~~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~-~Ps~a~~l~~~LGl~~--~~~r~~d~~~gC~G~~~aL~ 176 (401)
T PLN03170 100 DIVVVEVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVD-MPGADYQLTKMLGLRP--SVNRLMMYQQGCFAGGTVLR 176 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCC-CChHHHHHHHHhCcCc--ccHHHHhhcChhHHHHHHHH
Confidence 02378899999999999999999999999999999865 8999999999998742 33 48999999999999999
Q ss_pred HHHHHHHhCCCCCCeEEEEEeeccc--cc-CC-------CCccccCcceEEEEEccCCCcccccc--ccccccCCccccc
Q 023511 126 NCVNWVESSSWDGRYGLVVCTDSAV--YA-EG-------PARPTGGAAAVVMLVGPDAPVAFESK--LRGSHMSHAYDFY 193 (281)
Q Consensus 126 ~A~~~l~~g~~~~~~aLVV~~e~~s--~~-~~-------~~~~~fGDGAaA~ll~~~~~~~i~~~--~~~s~~~~~~~~~ 193 (281)
+|..+++++. .++||||++|.+| +. +. .+..+|||||+|+||++++..++... .+.+... ..
T Consensus 177 ~A~~l~~~~~--~~~vLVV~~E~~S~~~~~~~~~~~~~~~~~~LFGDGAaAvVl~~~~~~~~~~~~~~l~~~~~----~~ 250 (401)
T PLN03170 177 VAKDLAENNR--GARVLVVCSEITAVTFRGPSESHLDSMVGQALFGDGAAAVIVGADPDERVERPLFQLVSASQ----TI 250 (401)
T ss_pred HHHHHHHcCC--CCeEEEEEEehhhhccCCcccchhhhhhhhhhhhceeEEEEEecCCcccccCCceEEeeccc----eE
Confidence 9999999984 4999999999988 32 11 13679999999999998654222111 1112111 11
Q ss_pred ccCCC--CcccCCC-C---cccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcEEecCCCChhHHHHHHHhccchhhh
Q 023511 194 KPNLA--SEYPVVD-G---KLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFM 267 (281)
Q Consensus 194 ~p~~~--~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~did~~i~Hq~n~~i~~~~~~~lg~~~~~ 267 (281)
.|... ..+...+ + .++.+++....+.+.+.+. +.|+++|++.+|||+|++||+|.+|++.+.++||+.+++
T Consensus 251 ~p~~~~~~~~~i~~~G~~~~l~~~vp~~~~~~i~~~v~---~~L~~~gl~~~di~~~v~Hqgg~~il~~v~~~Lgl~~~~ 327 (401)
T PLN03170 251 LPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERSLE---EAFKPLGITDYNSIFWVAHPGGPAILDQVEAKVGLEKER 327 (401)
T ss_pred ecCCcccccceEEcCCeEEEEehHHHHHHHHHHHHHHH---HHHHhcCCCccccCeEEecCCcHHHHHHHHHHcCCChHH
Confidence 22110 0111111 1 1123444333333333333 457889999999999999999999999999999999999
Q ss_pred hcCC---CccccccC
Q 023511 268 RNAR---LPSFLHLS 279 (281)
Q Consensus 268 ~~~~---~~~~~~~~ 279 (281)
..++ ..+|||.|
T Consensus 328 ~~~s~~~l~~~GNts 342 (401)
T PLN03170 328 MRATRHVLSEYGNMS 342 (401)
T ss_pred HHHHHHHHHHhCccH
Confidence 8765 67788875
No 29
>PLN02377 3-ketoacyl-CoA synthase
Probab=100.00 E-value=1.9e-34 Score=272.95 Aligned_cols=270 Identities=16% Similarity=0.206 Sum_probs=193.4
Q ss_pred CCceeEEeEEEEEcCC--cccchhHHHhhh---C-CCCceee--------eecCceeeeeCC------C-------CCCH
Q 023511 1 MAKNVGILAMDIYFPP--TCVQQEALEAHD---G-ASKGKYT--------IGLGQECMAFCS------E-------VEDV 53 (281)
Q Consensus 1 ~~~~v~I~~ig~~lP~--~~v~~~~~~~~~---~-~~~~~~~--------~gi~~r~~~~~~------~-------~e~~ 53 (281)
+++.|+++.+++|.|+ ++++.+.+.+.. | .+++.+. +|+|...+ ++. + .+.+
T Consensus 94 ~~~~vylvd~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ri~~~sgig~~t~-~p~~~~~~~~~~~~~~~~~ea 172 (502)
T PLN02377 94 RPRPVYLVDYSCYRAPDHLKAPFARFMEHSRLTGDFDDSSLEFQRKILERSGLGEDTY-VPEAMHYIPPRPSMAAAREEA 172 (502)
T ss_pred CCCCEEEEeeeeecCCccccccHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCCccc-cCchhccCCccchHHHHHHHH
Confidence 3578999999999998 578888877653 2 3333221 78887542 441 1 2458
Q ss_pred HHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCceeeecc-cccchHHHHHHHHHHHHH
Q 023511 54 ISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDST-NACYGGTAALFNCVNWVE 132 (281)
Q Consensus 54 ~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~-~~C~g~~~aL~~A~~~l~ 132 (281)
.+++..|+++||+++|++|+|||+||+ |||+++..|+++++|++.+|+. +++.+||++ .||+||+.||++|.++++
T Consensus 173 ~~l~~~A~~~aL~kaGi~p~dID~LVv-~cS~~~~~PSlaa~V~~~LGlr--~~v~afdL~gmGCsggl~aL~lA~~ll~ 249 (502)
T PLN02377 173 EQVMFGALDNLFANTNVNPKDIGILVV-NCSLFNPTPSLSAMIVNKYKLR--GNIRSFNLGGMGCSAGVIAVDLAKDMLQ 249 (502)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEE-ECCCCCCCCcHHHHHHHHhCCC--CCCeEEecccchhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999988 7999999999999999998864 368999999 499999999999999999
Q ss_pred hCCCCCCeEEEEEeeccc--c--cCCCC----ccccCcceEEEEEccCCC-c--------cccccccccccCCccccccc
Q 023511 133 SSSWDGRYGLVVCTDSAV--Y--AEGPA----RPTGGAAAVVMLVGPDAP-V--------AFESKLRGSHMSHAYDFYKP 195 (281)
Q Consensus 133 ~g~~~~~~aLVV~~e~~s--~--~~~~~----~~~fGDGAaA~ll~~~~~-~--------~i~~~~~~s~~~~~~~~~~p 195 (281)
++. .++||||++|.+| + .++.+ +.+|||||+|+||++.+. . ++.....+++++.+..+..+
T Consensus 250 ~~~--~~~aLVVstE~~S~~~~~~d~~s~lv~n~LFgDGAaAvlLs~~~~~~~~a~~~l~~iv~t~~~~d~~~~~~i~~~ 327 (502)
T PLN02377 250 VHR--NTYAVVVSTENITQNWYFGNKKSMLIPNCLFRVGGSAVLLSNKSRDKRRSKYKLVHVVRTHRGADDKAFRCVYQE 327 (502)
T ss_pred cCC--CCEEEEEEEeccccccCCCCCccccccceeeccccEEEEEecccccccccccccceEEEEEEEEcCCccceeeec
Confidence 995 4999999999987 2 23333 589999999999998431 1 23444445555544444433
Q ss_pred ---CCCCcccCCC------Cc-c-------c-------HHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCCcEEecCCCC
Q 023511 196 ---NLASEYPVVD------GK-L-------S-------QTCYLMALDTCYKCLCSKYEKLEGKQ-FSLSNADYFVFHSPY 250 (281)
Q Consensus 196 ---~~~~~~~~~~------~~-~-------~-------~~~~~~~~~~~~~~~~~~~~~l~~~g-~~~~did~~i~Hq~n 250 (281)
.++...+... ++ . . .+.+..+.....+.+. +.++..+ ...+|||+|++||+|
T Consensus 328 ~d~~G~~g~~ls~dl~~v~g~~l~~~i~~lg~~vl~~se~~~~~a~~~~~~~~~---~~l~~~~p~~~~didhf~iHqgg 404 (502)
T PLN02377 328 QDDAGKTGVSLSKDLMAIAGEALKTNITTLGPLVLPISEQLLFFATLVVKKLFN---KKMKPYIPDFKLAFDHFCIHAGG 404 (502)
T ss_pred cccCCCCCCCCCcchhhHhhHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH---HHHhhccCCcHhhcCEEEECCCC
Confidence 2333222111 00 0 0 0111122222222222 1234433 456899999999999
Q ss_pred hhHHHHHHHhccchhhhhcCC---CccccccC
Q 023511 251 NKLVQKSFARLLFNDFMRNAR---LPSFLHLS 279 (281)
Q Consensus 251 ~~i~~~~~~~lg~~~~~~~~~---~~~~~~~~ 279 (281)
.++++.+.++||+++++..++ ...|||.|
T Consensus 405 r~IId~v~k~LgL~~~~~e~sr~tL~r~GNTS 436 (502)
T PLN02377 405 RAVIDELEKNLQLLPVHVEASRMTLHRFGNTS 436 (502)
T ss_pred HHHHHHHHHHcCCCcccchHHHHHHHhcCCch
Confidence 999999999999999877777 56788865
No 30
>KOG1393 consensus Hydroxymethylglutaryl-CoA synthase [Lipid transport and metabolism]
Probab=100.00 E-value=5.3e-34 Score=252.91 Aligned_cols=271 Identities=66% Similarity=1.115 Sum_probs=251.1
Q ss_pred CceeEEeEEEEEcCCcccchhHHHhhhCCCCceeeeecCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEe
Q 023511 2 AKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVG 81 (281)
Q Consensus 2 ~~~v~I~~ig~~lP~~~v~~~~~~~~~~~~~~~~~~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~ 81 (281)
|.+++|.++-+|+|...|+++|++++.|.+..++..|+|+.++.++.+.|+...|+..++.+++++-+++++.|+.|-++
T Consensus 9 p~dvGI~aieiyfP~~yV~Q~elEk~d~vs~gKytIGLGq~~MgfcsdrEDi~Sl~ltvvs~Lmery~i~~~~IGRLEVG 88 (462)
T KOG1393|consen 9 PKDVGIIAIEIYFPSQYVDQEELEKFDGVSAGKYTIGLGQTQMGFCSDREDIISLSLTVVSRLMERYNIDPDSIGRLEVG 88 (462)
T ss_pred ccccceeEEEEEcCccccChhhHhhcCCccccceEeccCcceecccCchhhhhhhhHHHHHHHHHHhCCChhhcceEEec
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeecccccCCCCccccC
Q 023511 82 SETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGG 161 (281)
Q Consensus 82 s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s~~~~~~~~~fG 161 (281)
|.|-.+-..+.-+.+.+..+..|..++..+|..++|.|++.||-.|.+|+.+..|+++++||||+|..-|...+...+=|
T Consensus 89 TETiiDKSKSVKt~LMqLF~~sgNtdIEGiDttnACYGGtaALfnavnWiESssWDGr~aivV~gDIAvY~~G~aRpTGG 168 (462)
T KOG1393|consen 89 TETIIDKSKSVKTVLMQLFEESGNTDIEGIDTTNACYGGTAALFNAVNWIESSSWDGRYAIVVCGDIAVYAKGNARPTGG 168 (462)
T ss_pred ceeccccchHHHHHHHHHhhhcCCCccccccccccccccHHHHHHHhhhhhhcccCCceeEEEEeeEEEecCCCCCCCCC
Confidence 99998889999999999999999889999999999999999999999999999999999999999999998888889999
Q ss_pred cceEEEEEccCCCccccccccccccCCcccccccCCCCcccCCCCcccHHHHHHHHHHHHHHHHHHHH--HhhcCCCCCC
Q 023511 162 AAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYE--KLEGKQFSLS 239 (281)
Q Consensus 162 DGAaA~ll~~~~~~~i~~~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~g~~~~ 239 (281)
.||.|+||+++.+..|...+.+++.++..+|+.|..-+++|++||+++.+.|..++..+...+.++.. ..+.-+..++
T Consensus 169 AgAVAmLIgPnApi~ferglr~thM~hayDFyKPdl~SEyPvVDGklSi~cYl~Ald~cY~~~~kK~~~~~~~~~~~~l~ 248 (462)
T KOG1393|consen 169 AGAVAMLIGPNAPIIFERGLRATHMQHAYDFYKPDLLSEYPVVDGKLSIQCYLSALDRCYTVYRKKIAAQWQKSGSDNLN 248 (462)
T ss_pred cceEEEEEcCCCceEecccchhhhhhhhhhccCCCCCCcCceecCeehHHHHHHHHHHHHHHHHHHHHHHhccccCcccc
Confidence 99999999999987777777789999999999999889999999999999999999999888876543 1233355567
Q ss_pred CCcEEecCCCChhHHHHHHHhccchhhhhcCCC
Q 023511 240 NADYFVFHSPYNKLVQKSFARLLFNDFMRNARL 272 (281)
Q Consensus 240 did~~i~Hq~n~~i~~~~~~~lg~~~~~~~~~~ 272 (281)
+.|+++||.+.-|++++-..+|.+++...+|+.
T Consensus 249 ~fdy~ifHsP~cKlvqKs~arl~ynDf~~~~~~ 281 (462)
T KOG1393|consen 249 SFDYIIFHSPYCKLVQKSLARLLYNDFLLNPSQ 281 (462)
T ss_pred cCCeEEEeCchhhhHHHHHHHhhhhhhhhcccc
Confidence 999999999999999999999999999998884
No 31
>PLN02932 3-ketoacyl-CoA synthase
Probab=100.00 E-value=6.2e-34 Score=267.97 Aligned_cols=269 Identities=19% Similarity=0.229 Sum_probs=191.5
Q ss_pred CCceeEEeEEEEEcCC--cccchhHHHhhh------C-CCCce---------ee--eecCceeeeeCCCC----------
Q 023511 1 MAKNVGILAMDIYFPP--TCVQQEALEAHD------G-ASKGK---------YT--IGLGQECMAFCSEV---------- 50 (281)
Q Consensus 1 ~~~~v~I~~ig~~lP~--~~v~~~~~~~~~------~-~~~~~---------~~--~gi~~r~~~~~~~~---------- 50 (281)
+++.||++.+++|-|+ .+++.+.+.+.. | .+++. +. +|+|+|++ ++...
T Consensus 64 ~~~~vyl~d~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~rsGig~~t~-~p~~~~~~~~~~~~~ 142 (478)
T PLN02932 64 RPKPVYLVDFSCYLPPSHLKASIQTIMGHVRRVREAGAWKQESDYLMDFCEKILERSGLGQETY-IPEGLQCLPLQQNLA 142 (478)
T ss_pred CCCcEEEEeeeeecCcccccccHHHHHHHHHhhcccCCCCccchhHHHHHHHHHHHcCCCCcee-eccccccCCHHHHHH
Confidence 4678999999999998 578888877643 2 23222 22 79999884 33221
Q ss_pred ---CCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCceeeecc-cccchHHHHHHH
Q 023511 51 ---EDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDST-NACYGGTAALFN 126 (281)
Q Consensus 51 ---e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~-~~C~g~~~aL~~ 126 (281)
+.+.+|+.+|+++||+++|++|+|||+||++|++++ ..|+++++|++.+|+. +++.+||++ .||+||++||++
T Consensus 143 ~~~~ea~~la~~Aa~~aL~~agi~p~dId~lIv~tst~~-~~Pslaa~V~~~lGlr--~~i~~fdL~gmGCSggl~aL~l 219 (478)
T PLN02932 143 VSRKETEEVIIGAVDNLFRNTGISPSDIGILVVNSSTFN-PTPSLSSILVNKFKLR--DNIKSLNLGGMGCSAGVIAIDA 219 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCC-CCCcHHHHHHHHhCCC--CCceEEEeccchhhhHHHHHHH
Confidence 248999999999999999999999999999999987 7999999999988864 468999999 699999999999
Q ss_pred HHHHHHhCCCCCCeEEEEEeecccc----cCC----CCccccCcceEEEEEccCCC--c----ccc---ccccccccCCc
Q 023511 127 CVNWVESSSWDGRYGLVVCTDSAVY----AEG----PARPTGGAAAVVMLVGPDAP--V----AFE---SKLRGSHMSHA 189 (281)
Q Consensus 127 A~~~l~~g~~~~~~aLVV~~e~~s~----~~~----~~~~~fGDGAaA~ll~~~~~--~----~i~---~~~~~s~~~~~ 189 (281)
|.++++++. .++||||++|.+|. .++ .+..+|||||+|+||++.+. . ++. ....+++++.+
T Consensus 220 A~~ll~~~~--~~~aLVVstE~~S~~~~~~d~r~~l~t~~LFgDGAAAvlLs~~~~~~~~~~~~L~~~v~t~~~ad~~~~ 297 (478)
T PLN02932 220 AKSLLQVHR--NTYALVVSTENITQNLYLGNNKSMLVTNCLFRIGGAAILLSNRSRDRKRAKYELVHTVRVHTGADDRSY 297 (478)
T ss_pred HHHHHHcCC--CCeEEEEEEeecccccCCCcchhhhccceeecccceEEEEecccccccCcceEEEeeeeeeeccCCCcc
Confidence 999999995 49999999999882 222 35899999999999998542 1 233 33344455444
Q ss_pred ccccccCC--CC-c------ccCCC-----------Ccc-c--HHHHHHHHHHHHHHHHHHHHHhhcCCCCC---CCCcE
Q 023511 190 YDFYKPNL--AS-E------YPVVD-----------GKL-S--QTCYLMALDTCYKCLCSKYEKLEGKQFSL---SNADY 243 (281)
Q Consensus 190 ~~~~~p~~--~~-~------~~~~~-----------~~~-~--~~~~~~~~~~~~~~~~~~~~~l~~~g~~~---~did~ 243 (281)
.....+.+ |. + .|... +.. . .+.+.+.+....+.+.+ ....++.+ ++|||
T Consensus 298 ~~v~~~~d~~G~~g~~Lsk~lp~~~~~al~~ni~~~~p~v~p~~e~~~~~~~~~~~~~~k----~~~~~~~~~~~~~id~ 373 (478)
T PLN02932 298 ECATQEEDEDGIVGVSLSKNLPMVAARTLKINIATLGPLVLPLSEKFHFFVRFVKKKFFN----PKLKHYIPDFKLAFEH 373 (478)
T ss_pred ccceeecccCCcceeeECccchHHHHHHHhhhhhccccccccchhhhHHHHHHhHHHHHH----HHhhcCcHhHHhhhce
Confidence 44444321 11 1 01000 000 0 02222222222222211 11123433 68999
Q ss_pred EecCCCChhHHHHHHHhccchhhhhcCC---CccccccC
Q 023511 244 FVFHSPYNKLVQKSFARLLFNDFMRNAR---LPSFLHLS 279 (281)
Q Consensus 244 ~i~Hq~n~~i~~~~~~~lg~~~~~~~~~---~~~~~~~~ 279 (281)
|++||+|.+|++.+.++||+++++..++ ...|||.|
T Consensus 374 f~iHqggr~IIdav~k~LgL~~~~~e~s~~tL~rfGNTS 412 (478)
T PLN02932 374 FCIHAGGRALIDEMEKNLHLTPLDVEASRMTLHRFGNTS 412 (478)
T ss_pred EEEccCCHHHHHHHHHHcCCChHHHHHHHHHHHHhCChh
Confidence 9999999999999999999999888777 67788865
No 32
>PLN02854 3-ketoacyl-CoA synthase
Probab=100.00 E-value=2.5e-33 Score=265.45 Aligned_cols=270 Identities=16% Similarity=0.219 Sum_probs=195.1
Q ss_pred CCceeEEeEEEEEcCC--cccchhHHHhhh---C-CCCceee--------eecCceeeeeCC------C-------CCCH
Q 023511 1 MAKNVGILAMDIYFPP--TCVQQEALEAHD---G-ASKGKYT--------IGLGQECMAFCS------E-------VEDV 53 (281)
Q Consensus 1 ~~~~v~I~~ig~~lP~--~~v~~~~~~~~~---~-~~~~~~~--------~gi~~r~~~~~~------~-------~e~~ 53 (281)
+++.|+++.+++|-|+ .+++.+.+.+.. | .+++.+. +|+|..++ ++. + .+.+
T Consensus 110 ~~~~vylvd~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~sg~g~~ty-~P~~~~~~~~~~~~~~~r~ea 188 (521)
T PLN02854 110 RSKPVYLVDFACYKPEDERKISVDSFLTMTEENGSFEDETVQFQRRISTRSGLGDETY-LPRGITSRPPNLCMEEARAEA 188 (521)
T ss_pred CCCcEEEEeeeeecCCccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCccc-cCccccCCCCcchHHHHHHHH
Confidence 3568999999999998 578888777653 2 3443221 79998874 332 1 1347
Q ss_pred HHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCceeeecc-cccchHHHHHHHHHHHHH
Q 023511 54 ISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDST-NACYGGTAALFNCVNWVE 132 (281)
Q Consensus 54 ~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~-~~C~g~~~aL~~A~~~l~ 132 (281)
......|+++||+++|++|+|||+||++ ||+++..|+++++|++.+|+. +++.+||++ .||+||+.||++|.++++
T Consensus 189 ~~v~~~~~~~lL~kaGi~p~dID~LIv~-cS~~~p~PSlAa~I~n~LGlr--~~i~afdLsgmGCSggl~aL~lA~~lL~ 265 (521)
T PLN02854 189 EAVMFGALDSLFSKTGVKPRDIGILIVN-CSLFNPTPSLSAMIVNHYKLR--TDIKSYNLGGMGCSAGLISIDLANDLLK 265 (521)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEE-CCCCCCCCCHHHHHHHHhCCC--CCceEEecccchhhhHHHHHHHHHHHHH
Confidence 7888899999999999999999999984 889989999999999998864 378999998 699999999999999999
Q ss_pred hCCCCCCeEEEEEeeccc--c---cCCCC---ccccCcceEEEEEccCCC-cc--------ccccccccccCCccccccc
Q 023511 133 SSSWDGRYGLVVCTDSAV--Y---AEGPA---RPTGGAAAVVMLVGPDAP-VA--------FESKLRGSHMSHAYDFYKP 195 (281)
Q Consensus 133 ~g~~~~~~aLVV~~e~~s--~---~~~~~---~~~fGDGAaA~ll~~~~~-~~--------i~~~~~~s~~~~~~~~~~p 195 (281)
++. .++||||++|.+| + +++.+ ..+|||||+|+||++.+. .+ +....++++++.+..+..+
T Consensus 266 ~~~--~~~aLVVstE~~S~~~y~g~Drs~lv~~~LFgDGAAAvlLs~~~~~~~~~k~~L~~~v~t~~~ad~~~~~~i~~~ 343 (521)
T PLN02854 266 ANP--NSYAVVVSTENITLNWYFGNDRSMLLCNCIFRMGGAAVLLSNKARDRKRSKYQLVHTVRTHKGADDKNYNCVYQR 343 (521)
T ss_pred hCC--CCeEEEEEEeeeecCCCCCCchhhhcceeeeccceeEEEEecccccccccchheeeEEEEEEeeCCCccCeEEec
Confidence 995 4999999999988 3 34444 789999999999998541 11 3444556666555555554
Q ss_pred CC--CC-cccC------CCCc-----c---cHHHHH--HHHHHHHHHHHHHHHHhhcCCCCC------CCCcEEecCCCC
Q 023511 196 NL--AS-EYPV------VDGK-----L---SQTCYL--MALDTCYKCLCSKYEKLEGKQFSL------SNADYFVFHSPY 250 (281)
Q Consensus 196 ~~--~~-~~~~------~~~~-----~---~~~~~~--~~~~~~~~~~~~~~~~l~~~g~~~------~did~~i~Hq~n 250 (281)
.+ |. ..+. ..++ + ...++. ..+.-.+..+. +.|.++|+++ +|||||++||+|
T Consensus 344 ~d~~G~~g~~lsk~l~~va~~~l~~~i~~~g~~Vl~~se~~~f~~~~i~---~~L~~~gl~~~~pd~~~didhf~iHqgg 420 (521)
T PLN02854 344 EDDKGTIGVSLARELMAVAGDALKTNITTLGPLVLPLSEQFMFFVTLVR---RKLLKAKVKPYIPDFKLAFEHFCIHAGG 420 (521)
T ss_pred cCCCCcccccccccccchhhhhhhhhhhhccccccchHHHHHHHHHHHH---HHHHHcCCCccCCcccccCcEEEECCCC
Confidence 21 21 1110 0000 0 001111 10111122222 3467788887 699999999999
Q ss_pred hhHHHHHHHhccchhhhhcCC---CccccccC
Q 023511 251 NKLVQKSFARLLFNDFMRNAR---LPSFLHLS 279 (281)
Q Consensus 251 ~~i~~~~~~~lg~~~~~~~~~---~~~~~~~~ 279 (281)
.++++.+.++||+++++..++ ...|||.|
T Consensus 421 r~IId~v~k~LgL~~~~~e~sr~tL~rfGNTS 452 (521)
T PLN02854 421 RAVLDELQKNLQLSDWHMEPSRMTLHRFGNTS 452 (521)
T ss_pred HHHHHHHHHHcCCCcccccchHHHhhhcCChH
Confidence 999999999999998877777 46788865
No 33
>PF01154 HMG_CoA_synt_N: Hydroxymethylglutaryl-coenzyme A synthase N terminal; InterPro: IPR013528 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A synthase, HMG-CoA synthase. Hydroxymethylglutaryl-CoA synthase (2.3.3.10 from EC) catalyses the condensation of acetyl-CoA with acetoacetyl-CoA to produce HMG-CoA and CoA, the second reaction in the mevalonate-dependent isoprenoid biosynthesis pathway. HMG-CoA synthase contains an important catalytic cysteine residue that acts as a nucleophile in the first step of the reaction: the acetylation of the enzyme by acetyl-CoA (its first substrate) to produce an acetyl-enzyme thioester, releasing the reduced coenzyme A. The subsequent nucleophilic attack on acetoacetyl-CoA (its second substrate) leads to the formation of HMG-CoA []. HMG-CoA synthase occurs in eukaryotes, archaea and certain bacteria []. In vertebrates, there are two isozymes located in different subcellular compartments: a cytosolic form that is the starting point of the mevalonate pathway (leads to cholesterol and other sterolic and isoprenoid compounds), and a mitochondrial form responsible for ketone body biosynthesis. HMG-CoA is also found in other eukaryotes such as insects, plants and fungi []. In bacteria, isoprenoid precursors are generally synthesised via an alternative, non-mevalonate pathway, however a number of Gram-positive pathogens utilise a mevalonate pathway involving HMG-CoA synthase that is parallel to that found in eukaryotes [, ]. This entry represents the N-terminal domain of HMG-CoA synthase enzymes from both eukaryotes and prokaryotes.; GO: 0004421 hydroxymethylglutaryl-CoA synthase activity, 0008299 isoprenoid biosynthetic process; PDB: 1X9E_B 2HDB_B 2WYA_C 2P8U_A 3V4X_A 3V4N_C 3LEH_A 1TXT_D 1TVZ_A 2FA0_A ....
Probab=100.00 E-value=6.2e-34 Score=232.33 Aligned_cols=174 Identities=54% Similarity=0.864 Sum_probs=149.0
Q ss_pred CCceeEEeEEEEEcCCcccchhHHHhhhCCCCceeeeecCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEEE
Q 023511 1 MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEV 80 (281)
Q Consensus 1 ~~~~v~I~~ig~~lP~~~v~~~~~~~~~~~~~~~~~~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~ 80 (281)
||++|+|.+++.|+|+.+++.+++++..|.+++++..|+|+.++++++++|++.+||+.|++++|++.+++|++|++|++
T Consensus 1 ~p~~VGI~~i~~y~p~~~v~~~~La~~~g~d~~K~~~glgq~~~av~~~~ED~vTmA~nAa~~ll~~~~id~~~Ig~l~v 80 (174)
T PF01154_consen 1 RPQNVGIDAIEFYIPRYYVDQEELAEARGVDPGKYTIGLGQEKMAVPPPDEDIVTMAANAAKPLLDRYNIDPDDIGRLIV 80 (174)
T ss_dssp --SSEEEEEEEEE-ESEEEEHHHHHHHTTS-TCHHHTTT--SEEEE--TTS-HHHHHHHHHHTTHHHHT-HHHHEEEEEE
T ss_pred CCccccEeEEEEecCceEecHHHHHHHhCCCHHHhhhhcCeeEEEeCCCcccHHHHHHHHHHHHHHHcCCCHHHccEEEE
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCCCCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeecccccCCCCcccc
Q 023511 81 GSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTG 160 (281)
Q Consensus 81 ~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s~~~~~~~~~f 160 (281)
+|.|+.+...+.++++++.|++.+.+++..+|+.++|.|++.||+.|.+|++++.++++++|||++|...|.....+.+.
T Consensus 81 gTES~vD~sKs~~t~v~~ll~~s~~~~~~~~e~k~ACygGTaAL~~a~~~v~s~~~~g~~aLVVasDiA~y~~g~~e~Tq 160 (174)
T PF01154_consen 81 GTESGVDKSKSISTYVHQLLGLSGNPDCRGVEMKQACYGGTAALQNAVNWVASSPWDGRKALVVASDIARYDLGSAEPTQ 160 (174)
T ss_dssp E-SS-SBSSS-HHHHHHHHTTTTT-SSSEEEEEESGGGHHHHHHHHHHHHHCSTTSTTEEEEEEEEEEE--STTTTGGG-
T ss_pred eccccccccccHHHHHHHHhCcCCCCceeeeehhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccccccCCCCccccc
Confidence 99999999999999999999997777899999999999999999999999999876779999999999999876679999
Q ss_pred CcceEEEEEccCCC
Q 023511 161 GAAAVVMLVGPDAP 174 (281)
Q Consensus 161 GDGAaA~ll~~~~~ 174 (281)
|.||+|+||+++.+
T Consensus 161 GAGAVAmLi~~nap 174 (174)
T PF01154_consen 161 GAGAVAMLIGPNAP 174 (174)
T ss_dssp EEEEEEEEEECS-S
T ss_pred cceeEEEEecCCCC
Confidence 99999999998753
No 34
>PLN02192 3-ketoacyl-CoA synthase
Probab=100.00 E-value=4.8e-32 Score=256.13 Aligned_cols=260 Identities=14% Similarity=0.202 Sum_probs=182.8
Q ss_pred CCceeEEeEEEEEcCC--cccchhHHHhhhC----CCCceee--------eecCceeeeeCC------C-------CCCH
Q 023511 1 MAKNVGILAMDIYFPP--TCVQQEALEAHDG----ASKGKYT--------IGLGQECMAFCS------E-------VEDV 53 (281)
Q Consensus 1 ~~~~v~I~~ig~~lP~--~~v~~~~~~~~~~----~~~~~~~--------~gi~~r~~~~~~------~-------~e~~ 53 (281)
+++.|+++.+++|-|+ .+++.+.+.+... .+++.+. +|+|..++ ++. + .+.+
T Consensus 98 ~~~~vylvd~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~sglg~~t~-~p~~~~~~~~~~~~~~~~~Ea 176 (511)
T PLN02192 98 RPRPVYLVDFSCYKPDDSRKCTRKIFMDRSKLTGSFTEENLEFQRKILERSGLGESTY-LPEAVLNVPPNPCMAEARKEA 176 (511)
T ss_pred CCCcEEEEeeeeecCCccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCccc-CChhhccCCCCccHHHHHHHH
Confidence 3568999999999998 4788888877642 3433221 79998764 332 1 2348
Q ss_pred HHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCceeeeccc-ccchHHHHHHHHHHHHH
Q 023511 54 ISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTN-ACYGGTAALFNCVNWVE 132 (281)
Q Consensus 54 ~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~-~C~g~~~aL~~A~~~l~ 132 (281)
.++...|+++||+++|++|+|||+||++ +++++..|+++++|++.+|+. +++.+||+++ ||+||+.||++|.++++
T Consensus 177 ~~~~~~Aa~~aL~kaGi~p~DIDiLIv~-~S~~~~~PSlaa~I~n~lGlr--~~i~afdLsgmGCSggl~aLdlA~~lL~ 253 (511)
T PLN02192 177 ETVMFGAIDQLLAKTSVKPKDIGILIVN-CSLFNPTPSLSAMVINHYKLR--GNILSYNLGGMGCSAGLISIDLAKHLLQ 253 (511)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEE-CCCCCCCchHHHHHHHHhCCC--CCceEEEcccchhhhHHHHHHHHHHHHH
Confidence 8999999999999999999999999987 678888999999999999864 4689999995 99999999999999999
Q ss_pred hCCCCCCeEEEEEeeccc--c---cCCCC---ccccCcceEEEEEccCCC--c----cccc---cccccccCCccccccc
Q 023511 133 SSSWDGRYGLVVCTDSAV--Y---AEGPA---RPTGGAAAVVMLVGPDAP--V----AFES---KLRGSHMSHAYDFYKP 195 (281)
Q Consensus 133 ~g~~~~~~aLVV~~e~~s--~---~~~~~---~~~fGDGAaA~ll~~~~~--~----~i~~---~~~~s~~~~~~~~~~p 195 (281)
++. .++||||++|.+| + +++.+ +.+|||||+|+||++.+. . ++.. ...+++.+.+...+.+
T Consensus 254 a~~--~~~aLVVstE~~S~n~y~g~drs~lv~n~LFgDGAaAvLLs~~~~~~~~~k~~L~~~vrt~~~~dd~~~~~v~~~ 331 (511)
T PLN02192 254 VHP--NSYALVISMENITLNWYFGNDRSMLVSNCLFRMGGAAILLSNKRSDRRRSKYQLVHTVRTHKGADDKCFACVTQE 331 (511)
T ss_pred cCC--CCeEEEEEEEeccccCCCCCCHHHHhccccccccceEEEEeccccccccccceeeeeEEEEecCChhhccceecc
Confidence 995 4999999999988 2 23333 479999999999998431 1 3331 2223333222222222
Q ss_pred CC---CCcc------cCCCCc--------------------------ccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 023511 196 NL---ASEY------PVVDGK--------------------------LSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSN 240 (281)
Q Consensus 196 ~~---~~~~------~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~d 240 (281)
.. +.+. +...+. ...++|...++..++.+ ..+
T Consensus 332 ed~~g~~g~~Lskdl~~vag~al~~ni~~l~p~vlp~~e~~~~~~~m~gr~vfk~~~~~~~p~~-------------~~~ 398 (511)
T PLN02192 332 EDSAGKIGVSLSKDLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVGKKLFKMKLKPYIPDF-------------KLA 398 (511)
T ss_pred cccccceeeEecchhhhhhhhhhhhhhhhcccccCccchhhceeEEEcChHHHHHHhhhccHHH-------------HHh
Confidence 10 0000 000000 00122222222212222 147
Q ss_pred CcEEecCCCChhHHHHHHHhccchhhhhcCC---CccccccC
Q 023511 241 ADYFVFHSPYNKLVQKSFARLLFNDFMRNAR---LPSFLHLS 279 (281)
Q Consensus 241 id~~i~Hq~n~~i~~~~~~~lg~~~~~~~~~---~~~~~~~~ 279 (281)
||+|++||+|.++++.+.++||+++++..++ ...|||.|
T Consensus 399 Idhf~iHqggr~IId~v~k~LgL~~~~~e~sr~tL~rfGNTS 440 (511)
T PLN02192 399 FEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTS 440 (511)
T ss_pred hceEeeccCCHHHHHHHHHHcCCCchhhhHHHHHHhHcCChH
Confidence 9999999999999999999999999777777 67788865
No 35
>COG3424 BcsA Predicted naringenin-chalcone synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.98 E-value=7.3e-32 Score=234.22 Aligned_cols=261 Identities=15% Similarity=0.183 Sum_probs=192.0
Q ss_pred eEEeEEEEEcCCcccchhHHHhhhC----CC-Cceee------eecCceeeeeCCC---------------CCCHHHHHH
Q 023511 5 VGILAMDIYFPPTCVQQEALEAHDG----AS-KGKYT------IGLGQECMAFCSE---------------VEDVISMSL 58 (281)
Q Consensus 5 v~I~~ig~~lP~~~v~~~~~~~~~~----~~-~~~~~------~gi~~r~~~~~~~---------------~e~~~~la~ 58 (281)
..|.+++.++|++++++.|+.+.+. .+ -+.|. .+|..|+...+.+ -|.+.++++
T Consensus 2 a~i~sv~t~~Ppy~~~Qse~~d~f~~~~~~~~~~~I~r~l~~~~~i~~R~~v~Pl~~y~e~~~f~ekN~ifie~a~~l~v 81 (356)
T COG3424 2 AVIASVATALPPYRYNQSEITDSFAELPFQEGREDIPRVLHANAQINRRHLVLPLDWYREPHGFGEKNEIFIEEAVPLGV 81 (356)
T ss_pred ceeeecccCCCccccchHHHHHHHHHhccccchHHHHHHHhhccccccceecccHhhccCCCChhhhhhhHHHHHHHHHH
Confidence 4699999999999999988776531 11 11121 3455555332221 145899999
Q ss_pred HHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCceeeeccc-ccchHHHHHHHHHHHHHhCCCC
Q 023511 59 TAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTN-ACYGGTAALFNCVNWVESSSWD 137 (281)
Q Consensus 59 ~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~-~C~g~~~aL~~A~~~l~~g~~~ 137 (281)
+|+++||+.+++.|+|||+|+++|+|+.. .|++...|...|++. +++..+.+.+ ||+++..||..|..|++++ |
T Consensus 82 ~a~r~aL~~~~l~pedId~vv~vtsTG~~-~Ps~dari~~~Lgl~--p~~~Rvpv~glGCaaga~glara~~y~ra~--P 156 (356)
T COG3424 82 DALRRALDGSPLRPEDIDAVVTVTSTGLA-TPSLDARIVGELGLS--PDTRRVPVWGLGCAAGAAGLARARDYCRAA--P 156 (356)
T ss_pred HHHHHHhccCCCCHHHCcEEEEEeecccc-CCChhHHHHhhcCCC--CccceeeeecchhhhhhhHHHHHHHHHhhC--c
Confidence 99999999999999999999999999986 799999888888875 5788999986 9999999999999999999 5
Q ss_pred CCeEEEEEeecccc----cCC-C----CccccCcceEEEEEccCCCc-cc---cccccccccCCcccccccCCCCcccCC
Q 023511 138 GRYGLVVCTDSAVY----AEG-P----ARPTGGAAAVVMLVGPDAPV-AF---ESKLRGSHMSHAYDFYKPNLASEYPVV 204 (281)
Q Consensus 138 ~~~aLVV~~e~~s~----~~~-~----~~~~fGDGAaA~ll~~~~~~-~i---~~~~~~s~~~~~~~~~~p~~~~~~~~~ 204 (281)
..+|||||.|.||. .++ . ...+||||++|+|++.+.+. +. ....+++.+.-.++.-. .+.+.+.
T Consensus 157 ~~~vlvV~vELCSLt~~~~d~t~s~lVgtaLF~DG~AA~vv~gd~~~~~~~~~~p~i~~s~StL~~dse~---~Mgwdv~ 233 (356)
T COG3424 157 DANVLVVCVELCSLTYVFADDTKSNLVGTALFGDGAAAVVVSGDRRAEGKRPLRPDILDSFSTLYPDSED---IMGWDVG 233 (356)
T ss_pred cceEEEEEeeeeeeeeecCCCCcccceeeeeecCCeeEEEEeccccccccCCCCceecccccccCCcccc---ccceeec
Confidence 69999999999992 222 2 37899999999999986541 11 11122333322222111 1222233
Q ss_pred CCcc----c--HHHH-HHHHHHHHHHHHHHHHHhhcCCCCCCCCcEEecCCCChhHHHHHHHhccchhhhhcCCCcc---
Q 023511 205 DGKL----S--QTCY-LMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNARLPS--- 274 (281)
Q Consensus 205 ~~~~----~--~~~~-~~~~~~~~~~~~~~~~~l~~~g~~~~did~~i~Hq~n~~i~~~~~~~lg~~~~~~~~~~~~--- 274 (281)
+..+ + .+.+ ...+...+..+ |...+++.+||+.|+.|+++.|+++++.+.||+++++...+|++
T Consensus 234 d~G~~~vlSrdlp~lIe~~l~~~V~~f------L~~~~ls~~dI~~w~~HPGG~KVida~~~sLgls~e~l~~s~~~L~~ 307 (356)
T COG3424 234 DQGLKVVLSRDLPNLIESYLAPNVTTF------LATHGLSIEDIEAWVVHPGGPKVIDAYEESLGLSPEALELSWDVLRE 307 (356)
T ss_pred CCcEEEEEcCchhHHHHHHhhhhHHHH------HHHcCCchhhhceeeeCCCCchHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3222 2 2222 23444444444 67799999999999999999999999999999999999999875
Q ss_pred ccccC
Q 023511 275 FLHLS 279 (281)
Q Consensus 275 ~~~~~ 279 (281)
|||+|
T Consensus 308 ~GNMS 312 (356)
T COG3424 308 YGNMS 312 (356)
T ss_pred hCCcc
Confidence 66765
No 36
>PLN00415 3-ketoacyl-CoA synthase
Probab=99.97 E-value=2e-29 Score=235.10 Aligned_cols=271 Identities=16% Similarity=0.204 Sum_probs=174.2
Q ss_pred CCceeEEeEEEEEcCC--cccchhHHHhhh---C-CCCcee------e--eecCceee---------eeCC--CCCCHHH
Q 023511 1 MAKNVGILAMDIYFPP--TCVQQEALEAHD---G-ASKGKY------T--IGLGQECM---------AFCS--EVEDVIS 55 (281)
Q Consensus 1 ~~~~v~I~~ig~~lP~--~~v~~~~~~~~~---~-~~~~~~------~--~gi~~r~~---------~~~~--~~e~~~~ 55 (281)
+++.||++.+++|-|+ .+++.+.+.+.. | .+++.+ . +|+|...+ ..+. +.....+
T Consensus 56 ~~~~vylvd~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~F~~~i~~rSGlg~et~~p~~~~~~~~~~~~~~~~~e~e 135 (466)
T PLN00415 56 RSKPVYLVDFSCHQPTDSCKISSETFFNMAKGAQLYTEETIQFMTRILNRSGLGDDTYSPRCMLTSPPTPSMYEARHESE 135 (466)
T ss_pred CCCcEEEEeeeeecCCccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCeeeCCccccCCCCCChhhhHHHHH
Confidence 3578999999999988 568888766542 1 222211 1 35544321 1222 2334567
Q ss_pred HHHH-HHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCceeeeccc-ccchHHHHHHHHHHHHHh
Q 023511 56 MSLT-AVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTN-ACYGGTAALFNCVNWVES 133 (281)
Q Consensus 56 la~~-Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~-~C~g~~~aL~~A~~~l~~ 133 (281)
|++. |+++||+++|++|+|||+||+ ++|+++..|+.++++++.+|+. +++.+||+++ ||+|++.||.+|.+++++
T Consensus 136 m~i~~A~~~aL~~aGi~p~dID~LIv-s~T~~~~~Pslaa~l~~~LGLr--~~v~~~dL~gmGCsggv~aL~lA~~ll~a 212 (466)
T PLN00415 136 LVIFGALNSLFKKTGIEPREVGIFIV-NCSLFNPNPSLSSMIVNRYKLK--TDVKTYNLSGMGCSAGAISVDLATNLLKA 212 (466)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEE-ECcCCCCCchHHHHHHHHhCCC--CCceEEEeccccchHHHHHHHHHHHHHHh
Confidence 7776 777899999999999999995 5788878999999999999874 5799999997 999999999999999999
Q ss_pred CCCCCCeEEEEEeeccc--c-cC--CC---CccccCcceEEEEEccCCCc------cccccccccccCCcccccc----c
Q 023511 134 SSWDGRYGLVVCTDSAV--Y-AE--GP---ARPTGGAAAVVMLVGPDAPV------AFESKLRGSHMSHAYDFYK----P 195 (281)
Q Consensus 134 g~~~~~~aLVV~~e~~s--~-~~--~~---~~~~fGDGAaA~ll~~~~~~------~i~~~~~~s~~~~~~~~~~----p 195 (281)
+ +.++||||++|.+| + +. +. ...+|||||+|+||++++.. .+.. ...++.....+.+. .
T Consensus 213 ~--~~~~aLVVs~E~~S~~~~~~~dr~~lv~n~LFgDGAAAvlLs~~~~~~~~~~~~L~~-~vrt~~~~~d~~~~~~~~~ 289 (466)
T PLN00415 213 N--PNTYAVIVSTENMTLSMYRGNDRSMLVPNCLFRVGGAAVMLSNRSQDRVRSKYELTH-IVRTHKGSSDKHYTCAEQK 289 (466)
T ss_pred C--CCCEEEEEEEecccccccCCCcHhHhccceeecccceEEEEecCcccccCccceeee-EEEecCCCChhhhcceeee
Confidence 9 45999999999988 2 22 22 25899999999999985421 1110 11222111111111 0
Q ss_pred CCCCcccCCCCcccH---HHHHHHHHHHHHHHHHH-------H--------HHhhcCCCCC--CC----CcEEecCCCCh
Q 023511 196 NLASEYPVVDGKLSQ---TCYLMALDTCYKCLCSK-------Y--------EKLEGKQFSL--SN----ADYFVFHSPYN 251 (281)
Q Consensus 196 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-------~--------~~l~~~g~~~--~d----id~~i~Hq~n~ 251 (281)
....++ ..-.++. .+-.++++..+..+... + ..+.+..+++ .| +++|++|++++
T Consensus 290 ~d~~G~--~gv~Lsk~lp~va~~~l~~ni~~l~p~vlp~~e~~~~~~~~i~~~~~~~~~~~~~pd~~~~~~hf~iHpGGr 367 (466)
T PLN00415 290 EDSKGI--VGVALSKELTVVAGDTLKTNLTALGPLVLPLSEKLRFILFLVKSKLFRLKVSPYVPDFKLCFKHFCIHAGGR 367 (466)
T ss_pred ecCCCc--ceEEEChHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHhhhhhhccCCCCCCCccccceeEEecCCcH
Confidence 000000 0000111 11122222111111000 0 0011112222 23 88999999999
Q ss_pred hHHHHHHHhccchhhhhcCCCcc---ccccC
Q 023511 252 KLVQKSFARLLFNDFMRNARLPS---FLHLS 279 (281)
Q Consensus 252 ~i~~~~~~~lg~~~~~~~~~~~~---~~~~~ 279 (281)
++++.+.+.|++++++..|||++ |||.|
T Consensus 368 aVLdave~~LgL~~~~le~Sr~vL~r~GN~S 398 (466)
T PLN00415 368 ALLDAVEKGLGLSEFDLEPSRMTLHRFGNTS 398 (466)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCch
Confidence 99999999999999999999764 67765
No 37
>PF00195 Chal_sti_synt_N: Chalcone and stilbene synthases, N-terminal domain; InterPro: IPR001099 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2.3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyse the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group [].; GO: 0016746 transferase activity, transferring acyl groups, 0009058 biosynthetic process; PDB: 3EUO_B 3EUT_C 3EUQ_D 3E1H_A 3AWK_A 3AWJ_A 2H84_A 3A5S_A 3A5Q_B 3A5R_A ....
Probab=99.94 E-value=2.3e-26 Score=196.86 Aligned_cols=166 Identities=22% Similarity=0.306 Sum_probs=129.7
Q ss_pred ceeEEeEEEEEcCCcccchhHHHhhh----CCCC-----ceee-----eecCceeeeeCC------C-------------
Q 023511 3 KNVGILAMDIYFPPTCVQQEALEAHD----GASK-----GKYT-----IGLGQECMAFCS------E------------- 49 (281)
Q Consensus 3 ~~v~I~~ig~~lP~~~v~~~~~~~~~----~~~~-----~~~~-----~gi~~r~~~~~~------~------------- 49 (281)
+..+|.+||+.+|+++++++++.+.+ +.+. +++. +||..|+..++. +
T Consensus 13 g~A~Il~IgTA~P~~~~~Q~~~~e~~~~~~~~~~~~~~~~~l~ri~~~sgI~~R~~vl~~~~~~~~p~~~~~~~ps~~~R 92 (226)
T PF00195_consen 13 GPAYILSIGTAVPPHRITQEEIAEFFFRITHSDDLPDLRRKLRRIFENSGIEKRHSVLPEEWLDEYPSFWDFADPSLAER 92 (226)
T ss_dssp SSEEEEEEEEE-SSEEEEGCCHHHHHHHHTT-TTGHHHHHHHHHHHHHST-SEEEESS-HHHHHTSGGGHSSSSS-HHHH
T ss_pred CCeEEEEEEEeCCCceecHHHHHHHHHHHhcccchhHHHHHHHhhhhccccceeccccchhhhhcCcchhhccCccHHHH
Confidence 57899999999999999999887652 3232 2222 678888754331 0
Q ss_pred ----CCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCceeeeccc-ccchHHHHH
Q 023511 50 ----VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTN-ACYGGTAAL 124 (281)
Q Consensus 50 ----~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~-~C~g~~~aL 124 (281)
.+.+.+|+.+|+++||+++|++++||++||++|||+.. .|+....+.+.||+. +++..+.+.+ ||+|++.||
T Consensus 93 ~~~~~~~a~~L~~~Aa~~AL~~~g~~~~dIthlv~vs~TG~~-~PglD~~l~~~LgL~--~~v~R~~i~~~GC~gg~~~L 169 (226)
T PF00195_consen 93 NALYAEEAPPLAEEAARKALAEAGLDPSDITHLVTVSCTGIA-APGLDARLINRLGLR--PDVQRTPIFGMGCAGGAAGL 169 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTS-GGGECEEEEEESSSSE-CS-HHHHHHHHHT----TTSEEEEEES-GGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCcccceEEEEecCCcC-CCchhHHHHhcCCCC--CCcEEEEEeccchhhHHHHH
Confidence 13488999999999999999999999999999999975 899999999999986 5799999986 999999999
Q ss_pred HHHHHHHHhCCCCCCeEEEEEeeccc--cc---CCC-----CccccCcceEEEEEccCC
Q 023511 125 FNCVNWVESSSWDGRYGLVVCTDSAV--YA---EGP-----ARPTGGAAAVVMLVGPDA 173 (281)
Q Consensus 125 ~~A~~~l~~g~~~~~~aLVV~~e~~s--~~---~~~-----~~~~fGDGAaA~ll~~~~ 173 (281)
..|..+.+++ |+.+||||+.|.+| +. +.. ...+|||||+|+||+.+|
T Consensus 170 ~~A~~~~~~~--p~a~VLvv~vElcsl~~~~~~~~~~~~lv~~aLFgDGaAA~vv~~dP 226 (226)
T PF00195_consen 170 RRAKDIARAN--PGARVLVVCVELCSLHFQAPNDDSLDNLVANALFGDGAAAVVVGADP 226 (226)
T ss_dssp HHHHHHHHHS--TT-EEEEEEEEEGGGTHHHCCTTSHHHHHHHHHB-EEEEEEEEESS-
T ss_pred HHHHHHHhCC--ccceEEEEEEEeeEEEEecCCcccHHHHhHHhhhcCCceEEEEccCC
Confidence 9999999998 66999999999998 32 211 367999999999998764
No 38
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=99.91 E-value=4.2e-24 Score=187.50 Aligned_cols=192 Identities=15% Similarity=0.056 Sum_probs=147.1
Q ss_pred CHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHHHH
Q 023511 52 DVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWV 131 (281)
Q Consensus 52 ~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~~l 131 (281)
+..+|+.+|++++|+++|++++|||.||++++++++..|+.+..++..++.. +.+++++.++|++++.||+.|..+|
T Consensus 6 ~~~~l~~~A~~~al~~ag~~~~~i~~li~~~~~~~~~~~~~a~~i~~~lg~~---~~~~~~i~~~C~s~~~al~~A~~~i 82 (254)
T cd00327 6 TASELGFEAAEQAIADAGLSKGPIVGVIVGTTGGSGEFSGAAGQLAYHLGIS---GGPAYSVNQACATGLTALALAVQQV 82 (254)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCceEEEEEECCCCccccHHHHHHHHHhCCC---CCCcceeccHhHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999887899999888888762 4678999999999999999999999
Q ss_pred HhCCCCCCeEEEEEeecccccCCCCccccCcceEEEEEccCCCc-c----ccccccccccCCcccccccCCCCcccCCCC
Q 023511 132 ESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPV-A----FESKLRGSHMSHAYDFYKPNLASEYPVVDG 206 (281)
Q Consensus 132 ~~g~~~~~~aLVV~~e~~s~~~~~~~~~fGDGAaA~ll~~~~~~-~----i~~~~~~s~~~~~~~~~~p~~~~~~~~~~~ 206 (281)
++|.. +++||+++|. .+|||||+|+||++.+.. . ......+..... .+. ... .
T Consensus 83 ~~g~~--~~~lv~~~e~---------~~~gdGAaa~vL~~~~~a~~~~~~~~~~i~~~~~~~-----~~~--~~~----~ 140 (254)
T cd00327 83 QNGKA--DIVLAGGSEE---------FVFGDGAAAAVVESEEHALRRGAHPQAEIVSTAATF-----DGA--SMV----P 140 (254)
T ss_pred HCCCC--CEEEEEecce---------eeecceEEEEEECcHHHHHHCCCceEEEEEEEEEcC-----CCC--CCC----C
Confidence 99966 9999999998 899999999999986421 0 111111111100 000 000 0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcEEecCCCChhHHHHHHHhccchhhhhc-----CCCcccccc
Q 023511 207 KLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRN-----ARLPSFLHL 278 (281)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~did~~i~Hq~n~~i~~~~~~~lg~~~~~~~-----~~~~~~~~~ 278 (281)
.. ....+...++. .|+++|++++|||+|++||++.++++.+.+.+++..++.. .....|+|.
T Consensus 141 ~~----~~~~~~~~i~~------~l~~ag~~~~did~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 207 (254)
T cd00327 141 AV----SGEGLARAARK------ALEGAGLTPSDIDYVEAHGTGTPIGDAVELALGLDPDGVRSPAVSATLIMTGHP 207 (254)
T ss_pred CC----ChHHHHHHHHH------HHHHcCCCHHHCCEEEccCCcCccccHHHHHHHHHHhCCCCCceeccccccccc
Confidence 01 12223333333 3677999999999999999999999999999999888763 335677775
No 39
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=99.88 E-value=4e-22 Score=175.27 Aligned_cols=168 Identities=20% Similarity=0.321 Sum_probs=137.8
Q ss_pred CCceeEEeEEEEEcCC--cccchhHHHhhhC----CCCcee------e--eecCceeeeeCCC-------------CCCH
Q 023511 1 MAKNVGILAMDIYFPP--TCVQQEALEAHDG----ASKGKY------T--IGLGQECMAFCSE-------------VEDV 53 (281)
Q Consensus 1 ~~~~v~I~~ig~~lP~--~~v~~~~~~~~~~----~~~~~~------~--~gi~~r~~~~~~~-------------~e~~ 53 (281)
++++|+++.+++|-|+ .+++.+.+.+... .+++.+ . +|+|.+++ +++. .+.+
T Consensus 5 R~r~VYLvDfac~kP~~~~~v~~~~~~e~~~~~~~f~~~sl~F~~kIlerSGlG~eTy-~P~~~~~~p~~~s~~~a~~Ea 83 (290)
T PF08392_consen 5 RPRPVYLVDFACYKPPDELRVSREEFIEHARRCGRFDEESLDFQRKILERSGLGDETY-LPPALHEIPPDPSLAAAREEA 83 (290)
T ss_pred CCCCEEEEeeeecCCCcccccCHHHHHHHHHhcccCChhHHHHHHHHHHhcCCCcccc-CCcccccCCCcccHHHHHHHH
Confidence 4678999999999998 4688888887642 333321 1 79998874 3321 1337
Q ss_pred HHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCceeeeccc-ccchHHHHHHHHHHHHH
Q 023511 54 ISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTN-ACYGGTAALFNCVNWVE 132 (281)
Q Consensus 54 ~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~-~C~g~~~aL~~A~~~l~ 132 (281)
..++..|++++|+++|++|+|||.||+.++ ...+.|+++++|....++. +++..+++++ ||++++.+++.|+++++
T Consensus 84 e~v~f~av~~LL~ktgv~p~dIdiLVvncs-~f~ptPSLsamIvnr~~mr--~di~~~nLsGMGCsAgliai~lA~~lL~ 160 (290)
T PF08392_consen 84 EMVIFGAVDDLLAKTGVKPSDIDILVVNCS-LFNPTPSLSAMIVNRYGMR--SDIKSYNLSGMGCSAGLIAIDLAKDLLQ 160 (290)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEECc-CCCcCCcHHHHHHHHhCCC--cCeeeecccCCcchhhHHHHHHHHHHHH
Confidence 789999999999999999999999998654 4678999999999999885 5799999986 99999999999999999
Q ss_pred hCCCCCCeEEEEEeeccc---cc--CC---CCccccCcceEEEEEccCCC
Q 023511 133 SSSWDGRYGLVVCTDSAV---YA--EG---PARPTGGAAAVVMLVGPDAP 174 (281)
Q Consensus 133 ~g~~~~~~aLVV~~e~~s---~~--~~---~~~~~fGDGAaA~ll~~~~~ 174 (281)
.. |+.+||||++|.++ |. ++ -++.+|+||++|+||++.+.
T Consensus 161 ~~--p~~~ALVVstE~~s~~~Y~G~~rsmlv~NcLFr~GgAAvLLSn~~~ 208 (290)
T PF08392_consen 161 AH--PNSYALVVSTENISANWYRGNDRSMLVSNCLFRMGGAAVLLSNKPS 208 (290)
T ss_pred hC--CCcEEEEEEEeecccccccCCcHHHhhccccccCCceeEEeecCcc
Confidence 99 56999999999998 32 22 25889999999999998764
No 40
>cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction. Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units).
Probab=99.86 E-value=2e-21 Score=177.03 Aligned_cols=201 Identities=16% Similarity=0.109 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHHHHcCCC----cCCccEEEEecccCCCC---------------------CcchHHHHHHHHhhcCCCC
Q 023511 53 VISMSLTAVTNLLEKYKID----PKQIGRLEVGSETVIDK---------------------SKSIKTFLMQIFEKFGNTD 107 (281)
Q Consensus 53 ~~~la~~Aa~~aL~~a~l~----~~dId~li~~s~t~~~~---------------------~p~~a~~i~~~l~~~g~~~ 107 (281)
..+|+++|+++||+++|++ +++||.||++|+++.+. .|+.+..++..+++ +
T Consensus 11 ~~~l~~~aa~~aL~~Ag~~~~~~~~~i~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl----~ 86 (332)
T cd00825 11 VSILGFEAAERAIADAGLSREYQKNPIVGVVVGTGGGSPRFQVFGADAMRAVGPYVVTKAMFPGASGQIATPLGI----H 86 (332)
T ss_pred HHHHHHHHHHHHHHHcCCCccccCCCCEEEEEEeCCccHHHHhhhhccccccCcchhhcccchHHHHHHHHHhCC----C
Confidence 7899999999999999999 99999999998877764 67888888888876 3
Q ss_pred ceeeecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeecccc----------------------cCCCCccccCcceE
Q 023511 108 IEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVY----------------------AEGPARPTGGAAAV 165 (281)
Q Consensus 108 ~~~~di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s~----------------------~~~~~~~~fGDGAa 165 (281)
.++++++++|++++.||+.|..+|++|.. +++||+++|..+. +......+|||||+
T Consensus 87 g~~~~v~~~cas~~~al~~A~~~i~~g~~--~~~Lv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gdGaa 164 (332)
T cd00825 87 GPAYDVSAACAGSLHALSLAADAVQNGKQ--DIVLAGGSEELAAPMDCEFDAMGALSTPEKASRTFDAAADGFVFGDGAG 164 (332)
T ss_pred CCccccccHhHHHHHHHHHHHHHHHcCCC--CEEEEeccccccCHHHHHHHhhccccCCCCCCCCCCCCCCCEEEEeeEE
Confidence 56899999999999999999999999966 9999999998651 01124679999999
Q ss_pred EEEEccCCCc-----cccccccccccCCcccccccCCCCcccCCCCcccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 023511 166 VMLVGPDAPV-----AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSN 240 (281)
Q Consensus 166 A~ll~~~~~~-----~i~~~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~d 240 (281)
|+||++.+.. .+.....+.... ..+. .. ..+ ......+..+++ +.|+++|++++|
T Consensus 165 A~vL~~~~~a~~~~~~~~~~i~~~~~~-----~~~~--~~-----~~~--~~~~~~~~~~i~------~al~~agl~~~d 224 (332)
T cd00825 165 ALVVEELEHALARGAHIYAEIVGTAAT-----IDGA--GM-----GAF--APSAEGLARAAK------EALAVAGLTVWD 224 (332)
T ss_pred EEEECcHHHHHHCCCeEEEEEEEEEEc-----cCCC--CC-----CCC--CcCHHHHHHHHH------HHHHHcCCCHhH
Confidence 9999975421 011111111000 0000 00 000 001122222333 346779999999
Q ss_pred CcEEecCCCChhHHHHHHHhccchhhhh-----cCCCccccccC
Q 023511 241 ADYFVFHSPYNKLVQKSFARLLFNDFMR-----NARLPSFLHLS 279 (281)
Q Consensus 241 id~~i~Hq~n~~i~~~~~~~lg~~~~~~-----~~~~~~~~~~~ 279 (281)
||++++||.+.++.+.+.++++...++. ....+.|||+.
T Consensus 225 id~~~~h~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~G~~~ 268 (332)
T cd00825 225 IDYLVAHGTGTPIGDVKELKLLRSEFGDKSPAVSATKAMTGNLS 268 (332)
T ss_pred CCEEEccCCCCCCCCHHHHHHHHHHhCCCCceeECCCcccccch
Confidence 9999999999999999999999887752 12245677753
No 41
>TIGR02845 spore_V_AD stage V sporulation protein AD. Bacillus and Clostridium species contain about 10 % dipicolinic acid (pyridine-2,6-dicarboxylic acid) by weight. This protein family, SpoVAD, belongs to the spoVA operon that is suggested to act in the transport of dipicolinic acid (DPA) from the mother cell, where DPA is synthesized, to the forespore, a process essential to sporulation. Members of this protein family are found, so far, in exactly those species believed capable of endospore formation.
Probab=99.83 E-value=3.5e-19 Score=158.75 Aligned_cols=224 Identities=13% Similarity=0.068 Sum_probs=150.5
Q ss_pred ceeEEeEEEEEcCCcccchhHHHhhhCCCCceeeeecCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEec
Q 023511 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGS 82 (281)
Q Consensus 3 ~~v~I~~ig~~lP~~~v~~~~~~~~~~~~~~~~~~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s 82 (281)
++.+|.+.++...+.. .+--+.+.+..--+. .-.|+++ .+.+..+|+.+|+++||+++|++++|||++++++
T Consensus 8 ~~p~i~~~~~~~g~~e-~~gpl~~~fd~~~~d--~~~g~ks-----~EkAe~eLa~eAa~~ALekAGL~~~DID~IIvGd 79 (327)
T TIGR02845 8 NPPVIVSAGTAVGPKE-GEGPLGDYFDKIYDD--LYCGEDS-----WEKAERKLMEDAVNLALKKANLKKDDVDFFLAGD 79 (327)
T ss_pred CCCEEEEEEEEecCcc-ccCCChhhCCEEEec--cccCCcC-----cchhHHHHHHHHHHHHHHHcCCCHHHCCEEEEeC
Confidence 4577888888776652 222233333211111 1235444 2456789999999999999999999999999987
Q ss_pred ccCCCCCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeeccc-----------c
Q 023511 83 ETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV-----------Y 151 (281)
Q Consensus 83 ~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s-----------~ 151 (281)
+++ .+..++++++.|+. +.||++++|++|++||.+|..+|++|.+ ++||||++|..+ |
T Consensus 80 -l~~--Q~~~As~vA~~LGI------P~fdV~~ACSTf~~AL~lAa~lI~SG~a--d~VLVV~Ssh~S~AErqfr~p~ey 148 (327)
T TIGR02845 80 -LLN--QIITANFVARDLGI------PFLGLYGACSTSMETLALGAMLVDGGFA--DRVLAATSSHYATAERQFRYPTEY 148 (327)
T ss_pred -CCC--cccHHHHHHHHhCC------CEEEEeccCHHHHHHHHHHHHHHhCCCC--CEEEEEEecccchhhhhccccccc
Confidence 344 35678878877763 4599999999999999999999999976 999999988766 1
Q ss_pred --cCCCCccccCcceEEEEEccCCCc-cccccccccccCCcccccccCCCCcccCCCCcccHHHHHHHH-HHHHHHHHHH
Q 023511 152 --AEGPARPTGGAAAVVMLVGPDAPV-AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMAL-DTCYKCLCSK 227 (281)
Q Consensus 152 --~~~~~~~~fGDGAaA~ll~~~~~~-~i~~~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 227 (281)
++++++.+|||||+|+||++.+.. .+.. .+.++- -++ | ..|. +++ -.++ +.+.+.+.
T Consensus 149 g~q~~~ta~~tgdGAGA~vl~~~~~~~~i~~---~t~gkv-~d~-----g----~~d~-~nm---gaamapaa~dti~-- 209 (327)
T TIGR02845 149 GVQKPPTAQWTVTGAGAVLLASTGGGPRITS---ATIGKV-VDY-----G----ITDP-LDM---GAAMAPAAADTIE-- 209 (327)
T ss_pred ccCCCCeeeEEEcccEEEEEeecCCCCceEE---EEEEEE-Eec-----C----CCCc-ccc---hhhhhHHHHHHHH--
Confidence 234678899999999999986532 2221 122211 011 1 1111 000 0111 22334444
Q ss_pred HHHhhcCCCCCCCCcEEecC---CCChhHHHHHHHhccchh
Q 023511 228 YEKLEGKQFSLSNADYFVFH---SPYNKLVQKSFARLLFND 265 (281)
Q Consensus 228 ~~~l~~~g~~~~did~~i~H---q~n~~i~~~~~~~lg~~~ 265 (281)
.-++..|.+++|+|.++.- ..+.+|+..++++-|++-
T Consensus 210 -~h~~d~~~~~~~yd~i~tgdlg~vg~~i~~~ll~~~g~~~ 249 (327)
T TIGR02845 210 -AHFKDTGRSVDDYDLIVTGDLARVGSEILRKLLKERGYDV 249 (327)
T ss_pred -HHHHHcCCChhhccEEEecchHHHHHHHHHHHHHHcCCCh
Confidence 2367799999999999965 467788888888877653
No 42
>PRK06147 3-oxoacyl-(acyl carrier protein) synthase; Validated
Probab=99.79 E-value=3.8e-18 Score=157.05 Aligned_cols=229 Identities=14% Similarity=0.067 Sum_probs=153.0
Q ss_pred CCceeEEeEEEEEcCCcc------------cchhHHHhhhCCC-CceeeeecCceeeeeCCCCCCHHHHHHHHHHHHHHH
Q 023511 1 MAKNVGILAMDIYFPPTC------------VQQEALEAHDGAS-KGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEK 67 (281)
Q Consensus 1 ~~~~v~I~~ig~~lP~~~------------v~~~~~~~~~~~~-~~~~~~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~ 67 (281)
|..+++|.+.|...|=-. ++|.+...+++.+ ++||....+.+.+.+. ..+...+|+.+|++++|++
T Consensus 1 ~~~~v~I~~~g~vs~lG~~~~~~~aa~ragi~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~r~~~La~~Al~~aL~~ 79 (348)
T PRK06147 1 MMRALAIVGSGMVTAVGLDAPSSCAAIRARLDNFQETRFIDPPGGEWLIGAPVPLPPPWR-GPERLAEMAAPAIAEALEG 79 (348)
T ss_pred CCCceEEEecceeecCcCCHHHHHHHHHcccccccccccccCCCCCceEeecCcCCcccC-chHHHHHHHHHHHHHHHHh
Confidence 566899999999988642 3333333334443 5777744444443353 3567899999999999999
Q ss_pred cC-CCcCCccEEEEecc-----cCCCCCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHHHHHhCCCCCCeE
Q 023511 68 YK-IDPKQIGRLEVGSE-----TVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYG 141 (281)
Q Consensus 68 a~-l~~~dId~li~~s~-----t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~~l~~g~~~~~~a 141 (281)
++ +++++||++|+.+. ++++..|..+..++..++.. ....+++++++|+++++||..|..+|++|.+ +.+
T Consensus 80 a~~~~~~~i~lil~~~~~~~~~~~~~~~~~~~~~~~~~lG~~--~~~~~~~i~~~casg~~Al~~A~~~i~~G~~--~~~ 155 (348)
T PRK06147 80 LPALDASEAPLLLCVAEEERPGRPPDLEERLLRELEARLGLR--LEPGSAVIARGRVSGAVALAQARRLIAAGGC--PRV 155 (348)
T ss_pred cccccccCCcEEEEeCchhcCCCCcchHHHHHHHHHHHhCCC--CCCCcccccccchHHHHHHHHHHHHHHcCCC--CEE
Confidence 99 79999999998654 33444556677777777752 2356799999999999999999999999976 999
Q ss_pred EEEEeecccc---------------cCCCCccccCcceEEEEEccCCC---c--cccccccccccCCcccccccCCCCcc
Q 023511 142 LVVCTDSAVY---------------AEGPARPTGGAAAVVMLVGPDAP---V--AFESKLRGSHMSHAYDFYKPNLASEY 201 (281)
Q Consensus 142 LVV~~e~~s~---------------~~~~~~~~fGDGAaA~ll~~~~~---~--~i~~~~~~s~~~~~~~~~~p~~~~~~ 201 (281)
||+++|..+. .++...++|||||+++||++.+. . .+.. .+ ++.......... ..
T Consensus 156 lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~G~v~GEGA~a~vLe~~~~A~~rga~i~a--~g-~~~~~~~~~~~~---~~ 229 (348)
T PRK06147 156 LVAGVDSLLTGPTLAHYEARDRLLTSQNSNGFIPGEAAAAVLLGRPAGGEAPGLPLLG--LG-LGREPAPVGESE---DL 229 (348)
T ss_pred EEEeeccccCHHHHHHHHHhhccCCCCCCCceeeeceEEEEEEccHhhhhcCCCceEE--EE-EeecCCCcccCC---CC
Confidence 9999997641 12346789999999999998542 1 2222 11 111100100000 00
Q ss_pred cCCCCcccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcEEecCCCChhHHH
Q 023511 202 PVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQ 255 (281)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~did~~i~Hq~n~~i~~ 255 (281)
| . .. ..+...++ ..|+++|++++||||+..|-.+.+..+
T Consensus 230 p-~----~g----~gl~~ai~------~AL~~agl~~~dId~v~ah~~gt~~~d 268 (348)
T PRK06147 230 P-L----RG----DGLTQAIR------AALAEAGCGLEDMDYRIADLNGEQYRF 268 (348)
T ss_pred C-C----Ch----HHHHHHHH------HHHHHcCCCHHHCCEEEcCCCCCccch
Confidence 1 0 11 12222222 346779999999999999987666543
No 43
>PRK08304 stage V sporulation protein AD; Validated
Probab=99.76 E-value=3.8e-17 Score=146.12 Aligned_cols=224 Identities=12% Similarity=0.035 Sum_probs=149.3
Q ss_pred ceeEEeEEEEEcCCcccchhHHHhhhCCCCceeeeecCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEec
Q 023511 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGS 82 (281)
Q Consensus 3 ~~v~I~~ig~~lP~~~v~~~~~~~~~~~~~~~~~~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s 82 (281)
++.+|.+.++...+.. .+--+.+.+..--+. .-+|+++ .+....+|+.+|+++||+++|++++|||++|+++
T Consensus 14 ~~p~i~~~~~~~g~~E-~~gpl~~~fd~~~~d--~~~Ge~s-----wEkAeseLa~eAa~~ALekAGI~~~DID~lI~Gd 85 (337)
T PRK08304 14 NPPYIISTGTIVGPKE-GEGPLGKYFDKILDD--DYCGEKS-----WEKAERKMMEDAIQQALQKANLKKSDIDYLLAGD 85 (337)
T ss_pred CCCEEEEEEEEecCcc-cCCCChhhCCeEecc--cccCCcC-----ccccHHHHHHHHHHHHHHHcCCCHHHCCEEEEEC
Confidence 3567777777776542 222233333211111 1233333 2456789999999999999999999999999987
Q ss_pred ccCCCCCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeeccc-----cc-----
Q 023511 83 ETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV-----YA----- 152 (281)
Q Consensus 83 ~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s-----~~----- 152 (281)
. .. .+..++++++.|+ .+++++.++|++|+.||.+|..++++|.+ ++||||++|..+ |+
T Consensus 86 l-l~--Q~~sAs~vA~~LG------IPa~dV~gACST~~~AL~lAa~lI~SG~a--d~VLVV~Ssh~s~aerqfr~P~ey 154 (337)
T PRK08304 86 L-LN--QIISANFAARELG------IPFLGLYGACSTMMESLALGSMLIDGGFA--DRVLAATSSHFATAERQFRFPTEY 154 (337)
T ss_pred C-CC--CcchHHHHHHHhC------CcEEEEeccCHHHHHHHHHHHHHHhcCCC--CEEEEEEcchhhhhhhhccCchhc
Confidence 5 22 3567887777665 35899999999999999999999999976 999999999876 22
Q ss_pred ---CCCCccccCcceEEEEEccCCCc-cccccccccccCCcccccccCCCCcccCCCCcccHHHHHHHH-HHHHHHHHHH
Q 023511 153 ---EGPARPTGGAAAVVMLVGPDAPV-AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMAL-DTCYKCLCSK 227 (281)
Q Consensus 153 ---~~~~~~~fGDGAaA~ll~~~~~~-~i~~~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 227 (281)
.++++..++|||+|+||++.+.. .+.. .+.++- -|+ | ..|. +++ -.++ +.+.+.+.
T Consensus 155 g~qrp~taqwtvtGAGA~i~~~~~~~~~i~~---~t~Gkv-~D~-----g----~~d~-~nm---gaaMapAa~dti~-- 215 (337)
T PRK08304 155 GGQRPPTAQWTVTGAGAVLLSREGSGPRITH---ATIGKV-VDL-----G----IKDP-NDM---GAAMAPAAADTIQ-- 215 (337)
T ss_pred cccCCCcceEEeeccEEEEEecCCCCceEEE---EeEEEE-Eec-----C----CCCc-ccc---hhhhhHHHHHHHH--
Confidence 12568899999999999986532 2221 122211 011 1 1111 000 0111 22334443
Q ss_pred HHHhhcCCCCCCCCcEEecC---CCChhHHHHHHHhccchh
Q 023511 228 YEKLEGKQFSLSNADYFVFH---SPYNKLVQKSFARLLFND 265 (281)
Q Consensus 228 ~~~l~~~g~~~~did~~i~H---q~n~~i~~~~~~~lg~~~ 265 (281)
.-++..|.+++|+|.++.- ..+.+|+..++++-|++-
T Consensus 216 -~h~~d~~~~~~~yDli~tGDlg~vG~~i~~~ll~~~g~~~ 255 (337)
T PRK08304 216 -QHFKDTGRSPEDYDLIVTGDLGRVGREILKELLKEEGYDI 255 (337)
T ss_pred -HHHHHcCCChhhccEEEEcchHHHHHHHHHHHHHHhCCCh
Confidence 2367799999999999965 467788888888888753
No 44
>cd00834 KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP.
Probab=99.63 E-value=1.4e-14 Score=135.79 Aligned_cols=226 Identities=12% Similarity=0.097 Sum_probs=136.9
Q ss_pred ceeEEeEEEEEcCCcccchhHHHhhh--CC------CCce---ee---ee-cCcee--eeeCC----CCCCHHHHHHHHH
Q 023511 3 KNVGILAMDIYFPPTCVQQEALEAHD--GA------SKGK---YT---IG-LGQEC--MAFCS----EVEDVISMSLTAV 61 (281)
Q Consensus 3 ~~v~I~~ig~~lP~~~v~~~~~~~~~--~~------~~~~---~~---~g-i~~r~--~~~~~----~~e~~~~la~~Aa 61 (281)
++|.|+|+|..+|.- .+.+++.+.+ |. +..+ +. .+ +.... ..++. .-.....|+.+|+
T Consensus 1 ~~i~I~G~g~~~p~g-~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~aa 79 (406)
T cd00834 1 RRVVITGLGAVTPLG-NGVEEFWEALLAGRSGIRPITRFDASGFPSRIAGEVPDFDPEDYLDRKELRRMDRFAQFALAAA 79 (406)
T ss_pred CcEEEECcceeCCCc-CCHHHHHHHHHcCCCeeEECCcccccCCCccEEEEcCCCChhhcCCHHHhccCCHHHHHHHHHH
Confidence 478999999999987 4556655542 11 1000 00 00 00000 00111 0124678999999
Q ss_pred HHHHHHcCCCcCCccE----EEEecccCC--------------------------CCCcchHHHHHHHHhhcCCCCceee
Q 023511 62 TNLLEKYKIDPKQIGR----LEVGSETVI--------------------------DKSKSIKTFLMQIFEKFGNTDIEGV 111 (281)
Q Consensus 62 ~~aL~~a~l~~~dId~----li~~s~t~~--------------------------~~~p~~a~~i~~~l~~~g~~~~~~~ 111 (281)
++||+++|+++++||. +++++..+. ...+..+..|+..+++. -+++
T Consensus 80 ~~AL~dAgl~~~~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl~----g~~~ 155 (406)
T cd00834 80 EEALADAGLDPEELDPERIGVVIGSGIGGLATIEEAYRALLEKGPRRVSPFFVPMALPNMAAGQVAIRLGLR----GPNY 155 (406)
T ss_pred HHHHHHcCCCcccCCccceEEEEccCCcchHHHHHHHHHHHhcCCcccChhHHhhhcccHHHHHHHHHhCCC----Cccc
Confidence 9999999999876653 455554432 12245667777777653 3578
Q ss_pred ecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeeccc---------------------------ccCCCCccccCcce
Q 023511 112 DSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV---------------------------YAEGPARPTGGAAA 164 (281)
Q Consensus 112 di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s---------------------------~~~~~~~~~fGDGA 164 (281)
.++.+|++++.||..|..+|++|.+ +++||+++|..+ ++.+...+++||||
T Consensus 156 ~v~~acas~~~Al~~A~~~i~~G~~--d~aLvgg~d~~~~p~~~~~~~~~~~l~~~~~~p~~~~~pf~~~~~g~~~geGA 233 (406)
T cd00834 156 TVSTACASGAHAIGDAARLIRLGRA--DVVIAGGAEALITPLTLAGFAALRALSTRNDDPEKASRPFDKDRDGFVLGEGA 233 (406)
T ss_pred ccchHHHHHHHHHHHHHHHHHcCCC--CEEEEcCcccccCHHHHHHHHhcCCcCCCCCCCccCCCCCCCCCCCEeeeccE
Confidence 9999999999999999999999977 999999998764 00112467899999
Q ss_pred EEEEEccCCCc-----cccccccccccCCcccccccCCCCcccCCCCcccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 023511 165 VVMLVGPDAPV-----AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLS 239 (281)
Q Consensus 165 aA~ll~~~~~~-----~i~~~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 239 (281)
+|+||++.+.. .+.... ...+......... .+.. ... .+..+++ ++|+++|++++
T Consensus 234 ~a~vL~~~~~A~~~g~~~~a~i-~g~~~~~d~~~~~-----~~~~----~~~----~~~~~i~------~al~~agi~~~ 293 (406)
T cd00834 234 GVLVLESLEHAKARGAKIYAEI-LGYGASSDAYHIT-----APDP----DGE----GAARAMR------AALADAGLSPE 293 (406)
T ss_pred EEEEEecHHHHHHCCCeEEEEE-EEEEecccCCCCC-----CCCC----CcH----HHHHHHH------HHHHHcCCCHH
Confidence 99999975421 111111 1111110000000 0000 011 1122222 34677999999
Q ss_pred CCcEEecCCCChhHHH
Q 023511 240 NADYFVFHSPYNKLVQ 255 (281)
Q Consensus 240 did~~i~Hq~n~~i~~ 255 (281)
|||++.+|..+....+
T Consensus 294 dId~v~~h~tgt~~~d 309 (406)
T cd00834 294 DIDYINAHGTSTPLND 309 (406)
T ss_pred HCCEEecccccCcccc
Confidence 9999999987765544
No 45
>PF08545 ACP_syn_III: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; InterPro: IPR013751 Fatty acid synthesis (FAS) is a vital aspect of cellular physiology which can occur by two distinct pathways. The FAS I pathway, which generally only produces palmitate, is found in eukaryotes and is performed either by a single polypeptide which contains all the reaction centres needed to form a fatty acid, or by two polypeptides which interact to form a multifunctional complex. The FAS II pathway, which is capable of producing many different fatty acids, is found in mitochondria, bacteria, plants and parasites, and is performed by many distinct proteins, each of which catalyses a single step within the pathway. The large diversity of products generated by this pathway is possible because the acyl carrier protein (ACP) intermediates are diffusible entities that can be diverted into other biosynthetic pathways []. 3-Oxoacyl-[acyl carrier protein (ACP)] synthase III catalyses the first condensation step within the FAS II pathway, using acetyl-CoA as the primer and malonyl-ACP as the acceptor, as shown below. Acyl-[ACP] + malonyl-[ACP] = 3-oxoacyl-[ACP] + CO(2) + [ACP] The oxoacyl-ACP formed by this reaction subsequently enters the elongation cycle, where the acyl chain is progressively lengthened by the combined activities of several enzymes. The enzymes studied so far are homodimers, where each monomer consists of two domains (N-terminal and C-terminal) which are similar in structure, but not in sequence [, ]. This entry represents a conserved region within the N-terminal domain.; GO: 0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity, 0006633 fatty acid biosynthetic process; PDB: 1ZOW_C 1UB7_B 3IL7_A 3IL3_A 2X3E_B 4DFE_C 3LED_B 3ROW_B 3S23_A 3S1Z_A ....
Probab=99.59 E-value=8.3e-16 Score=111.76 Aligned_cols=73 Identities=19% Similarity=0.134 Sum_probs=57.6
Q ss_pred eecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeecccc--cC--CCCccccCcceEEEEEccCCC--cccccccccc
Q 023511 111 VDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVY--AE--GPARPTGGAAAVVMLVGPDAP--VAFESKLRGS 184 (281)
Q Consensus 111 ~di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s~--~~--~~~~~~fGDGAaA~ll~~~~~--~~i~~~~~~s 184 (281)
|||+++|+|++.||++|..++++|.. ++||||++|+.+. +. +.+..+|||||+|+||+++++ .++++..+.+
T Consensus 1 fDi~~~C~g~~~al~~A~~~i~~g~~--~~~Lvv~~d~~s~~~~~~~~~~~~~~gDgAaA~vl~~~~~~~~~il~~~~~t 78 (80)
T PF08545_consen 1 FDINQACAGFLYALDVAAALIASGRA--KNALVVGGDRLSRIVDRTDRQTAFIFGDGAAAVVLSRDEEGGFGILDSHLRT 78 (80)
T ss_dssp EEEE-GGGHHHHHHHHHHHHHHTTS---SEEEEEEEEEGGGGSHTTHHHHHTTB-EEEEEEEEEEESSSSCEEEEEEEEE
T ss_pred CcccccchHHHHHHHHHHHHHhhccC--CEEEEEeeccccccccccccCcceeecchheEEEEEecCCCCCeEEEEEEEc
Confidence 79999999999999999999999965 9999999999883 22 345789999999999999743 3576665554
Q ss_pred c
Q 023511 185 H 185 (281)
Q Consensus 185 ~ 185 (281)
+
T Consensus 79 d 79 (80)
T PF08545_consen 79 D 79 (80)
T ss_dssp -
T ss_pred C
Confidence 4
No 46
>cd00829 SCP-x_thiolase Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism. The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein.
Probab=99.57 E-value=6.3e-14 Score=130.25 Aligned_cols=96 Identities=15% Similarity=0.105 Sum_probs=84.1
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHH
Q 023511 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVN 129 (281)
Q Consensus 50 ~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~ 129 (281)
+.+..+|+.+|+++||+++|++++|||.++++++.+....|..+..++..+++ +.+++++++.+|++++.++..|..
T Consensus 13 ~~~~~eL~~~A~~~Al~dagl~~~~Id~vi~g~~~~~~~~~~~a~~va~~lGl---~~~~~~~v~~~c~sg~~al~~Aa~ 89 (375)
T cd00829 13 DRSPLELAAEAARAALDDAGLEPADIDAVVVGNAAGGRFQSFPGALIAEYLGL---LGKPATRVEAAGASGSAAVRAAAA 89 (375)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEecccccccccchHHHHHHHcCC---CCcceeeEeCccHHHHHHHHHHHH
Confidence 67899999999999999999999999999998876665456777877777765 357789999999999999999999
Q ss_pred HHHhCCCCCCeEEEEEeeccc
Q 023511 130 WVESSSWDGRYGLVVCTDSAV 150 (281)
Q Consensus 130 ~l~~g~~~~~~aLVV~~e~~s 150 (281)
+|++|.+ +.+||+++|.++
T Consensus 90 ~I~sG~~--~~vlv~g~e~~s 108 (375)
T cd00829 90 AIASGLA--DVVLVVGAEKMS 108 (375)
T ss_pred HHHhCCC--CEEEEEEEeecc
Confidence 9999976 999999999754
No 47
>PRK12404 stage V sporulation protein AD; Provisional
Probab=99.54 E-value=4e-13 Score=119.81 Aligned_cols=224 Identities=14% Similarity=0.112 Sum_probs=142.7
Q ss_pred ceeEEeEEEEEcCCcccchhHHHhhhCCCCceeeeecCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEec
Q 023511 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGS 82 (281)
Q Consensus 3 ~~v~I~~ig~~lP~~~v~~~~~~~~~~~~~~~~~~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s 82 (281)
++.+|.+.++...+.. .+--+.+.+..--+. .-.|+.+ | +....+|+.+|+++||+++|++++|||++++++
T Consensus 12 ~~p~i~~~~~v~G~~E-~~Gpl~~~FD~~~~d--~~~g~~s--w---EkAE~~L~~EA~~~AL~kAGI~~~DID~i~vGd 83 (334)
T PRK12404 12 NKPVIISTGVVGGPFE-AKGPLAEDFDLLHED--LWLGQDS--Y---EKAERKLLEEACSRAIEKAKLRKEDIQFFLAGD 83 (334)
T ss_pred CCCEEEEEEEEeCCcc-cCCCChhhCCeeecc--cccCCcc--h---HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEe
Confidence 4577888888776642 222233333321111 1234444 1 345678999999999999999999999999998
Q ss_pred ccCCCCCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeeccc-----cc-----
Q 023511 83 ETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV-----YA----- 152 (281)
Q Consensus 83 ~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s-----~~----- 152 (281)
.+ ....|+ .++++.|+ ++.+++.++|+++..||.+|..++++|.+ ++||++++.... |+
T Consensus 84 L~-nQ~ips--sfvar~LG------IP~~gV~gACSTg~eAL~lAa~~VaSG~A--d~VLavtsSH~~~aErqfR~P~ey 152 (334)
T PRK12404 84 LM-NQITPT--SFAARTLG------IPYLGLFGACSTSMEGLALAALIVNSGGA--KYVLTGASSHNAAVEKQFRYPTEY 152 (334)
T ss_pred cC-CCcCcH--HHHHHHhC------CCccceeecCHHHHHHHHHHHHHHHcCCC--CEEEEEeCcccchhhhhccCcccc
Confidence 77 333444 46667666 33599999999999999999999999976 999999986543 11
Q ss_pred ---CCCCccccCcceEEEEEccCCCc-cccccccccccCCcccccccCCCCcccCCCCcccHHHHHHHH-HHHHHHHHHH
Q 023511 153 ---EGPARPTGGAAAVVMLVGPDAPV-AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMAL-DTCYKCLCSK 227 (281)
Q Consensus 153 ---~~~~~~~fGDGAaA~ll~~~~~~-~i~~~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 227 (281)
.++++.----||+|+||++.... .+.. .+.++- -|+ | ..|. +++ -.++ +.+.+.+.
T Consensus 153 G~Qrp~taqwTvTgaga~~l~~~~~~~~i~~---~T~Gkv-~D~-----g----~~d~-~nM---GaaMAPAA~dti~-- 213 (334)
T PRK12404 153 GGQKPPTAQWTVTGAGAAILSKTGDGPRVTS---ATIGRV-VDM-----G----LTDP-FNM---GGAMAPAAVDTIE-- 213 (334)
T ss_pred cCcCCCcccEEEEceEEEEEecCCCCceEEE---EEEEEE-Eec-----C----CCCc-ccc---hhhhhHHHHHHHH--
Confidence 12344444568889999876421 2221 122211 011 1 1111 000 0111 22334443
Q ss_pred HHHhhcCCCCCCCCcEEecC---CCChhHHHHHHHhccchh
Q 023511 228 YEKLEGKQFSLSNADYFVFH---SPYNKLVQKSFARLLFND 265 (281)
Q Consensus 228 ~~~l~~~g~~~~did~~i~H---q~n~~i~~~~~~~lg~~~ 265 (281)
.-++..|.+++|+|.++.- ..+.+|+..++++-|++-
T Consensus 214 -~h~~d~~~~~~~yDlI~TGDLg~vG~~i~~~ll~~~g~~~ 253 (334)
T PRK12404 214 -AHLRDRQIDASYYDLIVTGDLGHVGREIAKDLLHKHGVKV 253 (334)
T ss_pred -HHHHHhCCChhhccEEEEcchHHHHHHHHHHHHHHcCCCC
Confidence 2367789999999999965 467788888888877653
No 48
>PRK06064 acetyl-CoA acetyltransferase; Provisional
Probab=99.53 E-value=2.6e-13 Score=126.89 Aligned_cols=96 Identities=21% Similarity=0.135 Sum_probs=81.5
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCC--CcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHH
Q 023511 49 EVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDK--SKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFN 126 (281)
Q Consensus 49 ~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~--~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~ 126 (281)
.+.+..+|+.+|+++||+++|++++|||.+|+++++++.. .|..+..++..+++ +..++++++++|++++.++..
T Consensus 18 ~~~~~~eLa~~a~~~Al~dagl~~~~Id~vi~g~~~~~~~~~~~~~a~~va~~lGl---~~~~~~~v~~aCasg~~ai~~ 94 (389)
T PRK06064 18 WDVSLRDLAVEAGLEALEDAGIDGKDIDAMYVGNMSAGLFVSQEHIAALIADYAGL---APIPATRVEAACASGGAALRQ 94 (389)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecccccccccccHHHHHHHHcCC---CCCCeeEEeCCcHHHHHHHHH
Confidence 3567899999999999999999999999999988766543 35667766666664 346789999999999999999
Q ss_pred HHHHHHhCCCCCCeEEEEEeecc
Q 023511 127 CVNWVESSSWDGRYGLVVCTDSA 149 (281)
Q Consensus 127 A~~~l~~g~~~~~~aLVV~~e~~ 149 (281)
|..+|++|.+ +++||+++|.+
T Consensus 95 A~~~I~sG~~--~~vLv~G~e~~ 115 (389)
T PRK06064 95 AYLAVASGEA--DVVLAAGVEKM 115 (389)
T ss_pred HHHHHHCCCC--CEEEEEEEEec
Confidence 9999999976 99999999864
No 49
>smart00825 PKS_KS Beta-ketoacyl synthase. The structure of beta-ketoacyl synthase is similar to that of the thiolase family and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains.
Probab=99.52 E-value=8.5e-14 Score=131.34 Aligned_cols=115 Identities=17% Similarity=0.170 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcc----EEEEecccCCCC-------------------CcchHHHHHHHHhhcCCCCce
Q 023511 53 VISMSLTAVTNLLEKYKIDPKQIG----RLEVGSETVIDK-------------------SKSIKTFLMQIFEKFGNTDIE 109 (281)
Q Consensus 53 ~~~la~~Aa~~aL~~a~l~~~dId----~li~~s~t~~~~-------------------~p~~a~~i~~~l~~~g~~~~~ 109 (281)
...|+.+|+++||+++|+++++|| .|++++.++++. .+..+..+...+++.| +
T Consensus 87 ~~~l~~~aa~~Al~dAGl~~~~id~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~lgl~g----~ 162 (424)
T smart00825 87 QQRLLLEVAWEALEDAGIDPESLRGSRTGVFVGAMSSDYAELLARDPEDIEGYAATGTARSFIANRISYFFDLRG----P 162 (424)
T ss_pred HHHHHHHHHHHHHHHcCCChhHcCCCCCEEEEEEcHHHHHHHHhhCccccchhhhccchhHHHHHHHHHHhCCCC----C
Confidence 456999999999999999999998 788887665442 3345666666666532 5
Q ss_pred eeecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeeccc-------c---------------cCCCCccccCcceEEE
Q 023511 110 GVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV-------Y---------------AEGPARPTGGAAAVVM 167 (281)
Q Consensus 110 ~~di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s-------~---------------~~~~~~~~fGDGAaA~ 167 (281)
++.++.+|++++.||..|..+|++|.+ +.+||+++|... + +.....+++||||+|+
T Consensus 163 ~~~v~~acasg~~Al~~A~~~I~~G~~--d~vlvgg~~~~~~~~~~~~~~~~~~l~~~~~~~pf~~~~~g~~~geGAaal 240 (424)
T smart00825 163 SVTVDTACSSSLVALHLACQSLRSGEC--DMALAGGVNLILSPDTFVGFSRAGMLSPDGRCKTFDADADGYVRGEGVGVV 240 (424)
T ss_pred ccccccHhHHHHHHHHHHHHHHHcCCC--CeeEEeeeeecCCHHHHHHHhhcCCCCCCCCCCCCCCCCCcccccceEEEE
Confidence 799999999999999999999999976 999999998642 0 0112467899999999
Q ss_pred EEccCC
Q 023511 168 LVGPDA 173 (281)
Q Consensus 168 ll~~~~ 173 (281)
||++.+
T Consensus 241 VLe~~e 246 (424)
T smart00825 241 VLKRLS 246 (424)
T ss_pred EEccHH
Confidence 999743
No 50
>PRK06501 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.49 E-value=1.2e-12 Score=123.82 Aligned_cols=226 Identities=13% Similarity=0.058 Sum_probs=134.0
Q ss_pred ceeEEeEEEEEcCCcccchhHHHhhh--CCC----Cceee-eecCce---ee-eeCC----CCCCHHHHHHHHHHHHHHH
Q 023511 3 KNVGILAMDIYFPPTCVQQEALEAHD--GAS----KGKYT-IGLGQE---CM-AFCS----EVEDVISMSLTAVTNLLEK 67 (281)
Q Consensus 3 ~~v~I~~ig~~lP~~~v~~~~~~~~~--~~~----~~~~~-~gi~~r---~~-~~~~----~~e~~~~la~~Aa~~aL~~ 67 (281)
|+|.|.|+|...|-- .+.+++.+.+ |.+ ...+. .++..+ .. .... .......|+..|+++||++
T Consensus 11 ~~VvITG~G~vs~~G-~~~~~~~~~L~~G~s~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~aa~~Al~d 89 (425)
T PRK06501 11 PIVAVTGMGVVTSLG-QGKADNWAALTAGESGIHTITRFPTEGLRTRIAGTVDFLPESPFGASALSEALARLAAEEALAQ 89 (425)
T ss_pred cCEEEEeeeEECCCC-CCHHHHHHHHHcCCCceEcCCcccccCCCCceEEEEeecccccccccCHHHHHHHHHHHHHHHH
Confidence 469999999999986 3667766643 211 01110 001000 00 0000 0113467899999999999
Q ss_pred cCCCcCCcc------------------EEEEecc---------------cCCC-------CCcchHHHHHHHHhhcCCCC
Q 023511 68 YKIDPKQIG------------------RLEVGSE---------------TVID-------KSKSIKTFLMQIFEKFGNTD 107 (281)
Q Consensus 68 a~l~~~dId------------------~li~~s~---------------t~~~-------~~p~~a~~i~~~l~~~g~~~ 107 (281)
+|+++++++ .++.++. .+.+ ..|+.+..|...+++.
T Consensus 90 Agl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~gl~---- 165 (425)
T PRK06501 90 AGIGKGDFPGPLFLAAPPVELEWPARFALAAAVGDNDAPSYDRLLRAARGGRFDALHERFQFGSIADRLADRFGTR---- 165 (425)
T ss_pred cCCCccccccceeeccccccCCCCceEEEEEecCCccHHHHHHHHhhcCcccCChhhhhhcccHHHHHHHHHhCCC----
Confidence 999654422 1122211 1111 3356777777777654
Q ss_pred ceeeecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeec---------------ccc------------cCCCCcccc
Q 023511 108 IEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDS---------------AVY------------AEGPARPTG 160 (281)
Q Consensus 108 ~~~~di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~---------------~s~------------~~~~~~~~f 160 (281)
-++++++.+|++++.||..|..+|++|.+ +.+||+++|. .+. +.+...+++
T Consensus 166 G~~~~i~~aCaS~~~Al~~A~~~I~~G~~--d~vlvgG~d~~~~~~~~~~~~~~~~ls~~~~~~~~~~rpfd~~r~G~v~ 243 (425)
T PRK06501 166 GLPISLSTACASGATAIQLGVEAIRRGET--DRALCIATDGSVSAEALIRFSLLSALSTQNDPPEKASKPFSKDRDGFVM 243 (425)
T ss_pred CCceeecCccHHHHHHHHHHHHHHHcCCC--CEEEEeeecccCCHHHHHHHHHhhccccCCCCCCcccCCCCCCCCCeee
Confidence 34799999999999999999999999977 9999999993 111 011245899
Q ss_pred CcceEEEEEccCCC---c--cccccccccccCCcccccccCCCCcccCCCCcccHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 023511 161 GAAAVVMLVGPDAP---V--AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQ 235 (281)
Q Consensus 161 GDGAaA~ll~~~~~---~--~i~~~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 235 (281)
||||+|+||++.+. . .+.....+..... ...... . +.. +.. .+..+++ ++|+++|
T Consensus 244 GEGaaalVLe~~~~A~~rg~~i~a~i~g~~~~~-d~~~~~----~-~~~----~~~----~~~~ai~------~AL~~ag 303 (425)
T PRK06501 244 AEGAGALVLESLESAVARGAKILGIVAGCGEKA-DSFHRT----R-SSP----DGS----PAIGAIR------AALADAG 303 (425)
T ss_pred eccEEEEEECcHHHHHHCCCeEEEEEEEEEEcc-CCCCCC----C-CCC----CHH----HHHHHHH------HHHHHcC
Confidence 99999999998542 1 2333222221111 111110 0 000 011 1222222 3467799
Q ss_pred CCCCCCcEEecCCCChhHHH
Q 023511 236 FSLSNADYFVFHSPYNKLVQ 255 (281)
Q Consensus 236 ~~~~did~~i~Hq~n~~i~~ 255 (281)
++++||||+.+|-.+....+
T Consensus 304 i~p~dId~i~~Hgtgt~~~d 323 (425)
T PRK06501 304 LTPEQIDYINAHGTSTPEND 323 (425)
T ss_pred CCHHHcCEEEecCccCcchH
Confidence 99999999999987766654
No 51
>PRK06158 thiolase; Provisional
Probab=99.47 E-value=1.3e-12 Score=121.82 Aligned_cols=101 Identities=10% Similarity=-0.027 Sum_probs=79.8
Q ss_pred eeecCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCceeeeccc
Q 023511 36 TIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTN 115 (281)
Q Consensus 36 ~~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~ 115 (281)
..|+|...+... ++++..+|+.+|+++||+++|++++|||.+++++.. +..|+ ..+++.+|+ +...++++.+
T Consensus 12 IvG~g~t~~~~~-~~~t~~eL~~eA~~~Al~dAgl~~~dID~iv~~~~~--~~~~~--~~la~~lGl---~~~~~~~~~~ 83 (384)
T PRK06158 12 IVGAATAGLGEA-PGLSAMELLAQAAHRALADAGLTMADVDGLFTASPD--DALWG--LSVAEYLGI---RPRFVDGTMI 83 (384)
T ss_pred EEEeeeccceeC-CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCC--CCCcH--HHHHHHcCC---CCeeeccccC
Confidence 357776654222 467899999999999999999999999999987642 33343 445565554 4467788999
Q ss_pred ccchHHHHHHHHHHHHHhCCCCCCeEEEEEe
Q 023511 116 ACYGGTAALFNCVNWVESSSWDGRYGLVVCT 146 (281)
Q Consensus 116 ~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~ 146 (281)
+|+++..+|..|..+|++|.+ ++|||+.+
T Consensus 84 g~~s~~~al~~A~~~I~sG~~--d~vLV~~g 112 (384)
T PRK06158 84 GGSSFLAHLLPAALALEAGLC--DVALICYG 112 (384)
T ss_pred ccHHHHHHHHHHHHHHHcCCC--CEEEEeec
Confidence 999999999999999999977 99999843
No 52
>cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=99.47 E-value=1.7e-13 Score=128.04 Aligned_cols=98 Identities=10% Similarity=0.111 Sum_probs=85.0
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHH
Q 023511 49 EVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCV 128 (281)
Q Consensus 49 ~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~ 128 (281)
.+++..+|+.+|+++||+++|++++|||.||+++.++++..|..+..++..+++. .++++++++++|++++.+|.+|.
T Consensus 18 ~~~~~~~La~~A~~~AL~dAgl~~~dID~vi~~~~~~~~~~~~~a~~v~~~lGl~--~~~~~~~v~~~c~s~~~al~~A~ 95 (386)
T cd00751 18 KDVSADDLGAAVIKALLERAGLDPEEVDDVIMGNVLQAGEGQNPARQAALLAGLP--ESVPATTVNRVCGSGLQAVALAA 95 (386)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCHHHCCEEEEEeccCCCCCChHHHHHHHHcCCC--CCCchhhhccccHHHHHHHHHHH
Confidence 3578999999999999999999999999999988877766677776566665542 13789999999999999999999
Q ss_pred HHHHhCCCCCCeEEEEEeeccc
Q 023511 129 NWVESSSWDGRYGLVVCTDSAV 150 (281)
Q Consensus 129 ~~l~~g~~~~~~aLVV~~e~~s 150 (281)
.+|++|.+ ++|||+++|.++
T Consensus 96 ~~I~sG~~--~~vLv~g~e~~s 115 (386)
T cd00751 96 QSIAAGEA--DVVVAGGVESMS 115 (386)
T ss_pred HHHHCCCC--CeEEEeeeeccc
Confidence 99999976 999999999876
No 53
>TIGR01930 AcCoA-C-Actrans acetyl-CoA acetyltransferases. This model represents a large family of enzymes which catalyze the thiolysis of a linear fatty acid CoA (or acetoacetyl-CoA) using a second CoA molecule to produce acetyl-CoA and a CoA-ester product two carbons shorter (or, alternatively, the condensation of two molecules of acetyl-CoA to produce acetoacetyl-CoA and CoA). This enzyme is also known as "thiolase", "3-ketoacyl-CoA thiolase", "beta-ketothiolase" and "Fatty oxidation complex beta subunit". When catalyzing the degradative reaction on fatty acids the corresponding EC number is 2.3.1.16. The condensation reaction corresponds to 2.3.1.9. Note that the enzymes which catalyze the condensation are generally not involved in fatty acid biosynthesis, which is carried out by a decarboxylating condensation of acetyl and malonyl esters of acyl carrier proteins. Rather, this activity may produce acetoacetyl-CoA for pathways such as IPP biosynthesis in the absence of sufficient fatt
Probab=99.44 E-value=4e-13 Score=125.42 Aligned_cols=97 Identities=12% Similarity=0.152 Sum_probs=84.9
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHH
Q 023511 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVN 129 (281)
Q Consensus 50 ~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~ 129 (281)
+++..+|+.+|+++||+++|++++|||.+|+++.+++...|..+..++..+++. .++++++++++|++++.+|..|.+
T Consensus 18 ~~t~~~La~~A~~~Al~dAgl~~~dID~vv~g~~~~~~~~~~~a~~va~~lGl~--~~~~~~~v~~~Casg~~al~~A~~ 95 (386)
T TIGR01930 18 DVSAEDLGAAVIKELLERNPLDPELIDDVIFGNVLQAGEQQNIARQAALLAGLP--ESVPAYTVNRQCASGLQAVILAAQ 95 (386)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccCCCCCChHHHHHHHHcCCC--CCceeeeecchhhHHHHHHHHHHH
Confidence 578999999999999999999999999999988777665577777777777653 147899999999999999999999
Q ss_pred HHHhCCCCCCeEEEEEeeccc
Q 023511 130 WVESSSWDGRYGLVVCTDSAV 150 (281)
Q Consensus 130 ~l~~g~~~~~~aLVV~~e~~s 150 (281)
+|++|.+ +++||+++|.++
T Consensus 96 ~I~sG~~--~~vLv~g~e~~s 114 (386)
T TIGR01930 96 LIRAGEA--DVVVAGGVESMS 114 (386)
T ss_pred HHHCCCC--CEEEEEEehhhc
Confidence 9999976 999999999876
No 54
>cd00828 elong_cond_enzymes "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases.They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues.
Probab=99.42 E-value=6.7e-12 Score=117.85 Aligned_cols=117 Identities=15% Similarity=0.106 Sum_probs=85.9
Q ss_pred CCHHHHHHHHHHHHHHHcCCCcCC-cc----EEEEecccCC----------------------CCC--cchHHHHHHHHh
Q 023511 51 EDVISMSLTAVTNLLEKYKIDPKQ-IG----RLEVGSETVI----------------------DKS--KSIKTFLMQIFE 101 (281)
Q Consensus 51 e~~~~la~~Aa~~aL~~a~l~~~d-Id----~li~~s~t~~----------------------~~~--p~~a~~i~~~l~ 101 (281)
.....|+..|+++||+++|+++++ ++ .+++++..+. ... ...+..|...++
T Consensus 70 ~~~~~l~~~aa~~Al~dAGl~~~~~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~g 149 (407)
T cd00828 70 DRTTLLALVATEEALADAGITDPYEVHPSEVGVVVGSGMGGLRFLRRGGKLDARAVNPYVSPKWMLSPNTVAGWVNILLL 149 (407)
T ss_pred CHHHHHHHHHHHHHHHhCCCCccccCCccCeEEEEeeccCCHHHHHHHHHHHhhccCCcccchhccccchHHHHHHHHhC
Confidence 346789999999999999998765 33 2344443221 111 345555666666
Q ss_pred h-cCCCCceeeecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeeccc------c--------------------cCC
Q 023511 102 K-FGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV------Y--------------------AEG 154 (281)
Q Consensus 102 ~-~g~~~~~~~di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s------~--------------------~~~ 154 (281)
+ .| +++.+..+|++++.||..|..+|++|.+ +.+||.++|..+ | +.+
T Consensus 150 l~~G----p~~tv~~aCaS~~~Al~~A~~~I~~G~~--d~~lvgg~d~~~~~~~~~f~~~~~ls~~~~~~~~~~~pfd~~ 223 (407)
T cd00828 150 SSHG----PIKTPVGACATALEALDLAVEAIRSGKA--DIVVVGGVEDPLEEGLSGFANMGALSTAEEEPEEMSRPFDET 223 (407)
T ss_pred cCCC----CCcCcccHHHHHHHHHHHHHHHHHcCCC--CEEEEccccccChHHHHHHHHcCCCCCCCCCCCcccCCCcCC
Confidence 5 43 4789999999999999999999999976 999999999853 0 001
Q ss_pred CCccccCcceEEEEEccCC
Q 023511 155 PARPTGGAAAVVMLVGPDA 173 (281)
Q Consensus 155 ~~~~~fGDGAaA~ll~~~~ 173 (281)
...+++||||+++||++.+
T Consensus 224 ~~G~~~gEGAaalvLe~~~ 242 (407)
T cd00828 224 RDGFVEAEGAGVLVLERAE 242 (407)
T ss_pred CCcEEeecceEEEEEeeHH
Confidence 2467899999999999753
No 55
>PRK12578 acetyl-CoA acetyltransferase; Provisional
Probab=99.42 E-value=1.2e-12 Score=122.31 Aligned_cols=108 Identities=16% Similarity=0.140 Sum_probs=87.2
Q ss_pred eecCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCceeeecccc
Q 023511 37 IGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNA 116 (281)
Q Consensus 37 ~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~ 116 (281)
.|+|...+.. ..+++..+|+.+|+++||+++|++++|||.+|+++.++....+..+..++..+++. +..+++++++
T Consensus 6 vG~g~t~~~~-~~~~~~~eLa~~A~~~AL~dAgi~~~dID~vi~g~~~~~~~~~~~a~~v~~~lGl~---~~~~~~v~~~ 81 (385)
T PRK12578 6 IGVGNSKFGR-RDDVSVQELAWESIKEALNDAGVSQTDIELVVVGSTAYRGIELYPAPIVAEYSGLT---GKVPLRVEAM 81 (385)
T ss_pred Eeecccceee-cCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecccccccCChHHHHHHHhCCC---CCCeeEEecc
Confidence 4666554322 24678999999999999999999999999999988765432234466677777653 4567999999
Q ss_pred cchHHHHHHHHHHHHHhCCCCCCeEEEEEeeccc
Q 023511 117 CYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV 150 (281)
Q Consensus 117 C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s 150 (281)
|++++.+|..|..+|++|.+ +++|||++|.++
T Consensus 82 casg~~al~~A~~~I~sG~~--~~vLvvg~e~~s 113 (385)
T PRK12578 82 CATGLAASLTAYTAVASGLV--DMAIAVGVDKMT 113 (385)
T ss_pred CHHHHHHHHHHHHHHHCCCC--CEEEEEEEeecc
Confidence 99999999999999999976 999999999765
No 56
>PRK05656 acetyl-CoA acetyltransferase; Provisional
Probab=99.41 E-value=1e-12 Score=122.94 Aligned_cols=98 Identities=11% Similarity=0.112 Sum_probs=84.4
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHH
Q 023511 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVN 129 (281)
Q Consensus 50 ~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~ 129 (281)
+++..+|+.+|+++||+++|++|+|||.||+++.++....|..+..++..+|+.+ .+++++++++|++|+.++.+|..
T Consensus 23 ~~~~~~La~~A~~~AL~~agl~~~dID~vi~g~~~~~~~~~~~a~~va~~lGl~~--~~p~~~V~~~Casg~~ai~~A~~ 100 (393)
T PRK05656 23 NIPAVELGAAVIRRLLEQTGLDPAQVDEVILGQVLTAGAGQNPARQAAIKAGLPH--SVPAMTLNKVCGSGLKALHLAAQ 100 (393)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEEecCCCCCCcHHHHHHHHcCCCC--CcceEEecccchhHHHHHHHHHH
Confidence 5778999999999999999999999999999988765445666666666666421 37899999999999999999999
Q ss_pred HHHhCCCCCCeEEEEEeecccc
Q 023511 130 WVESSSWDGRYGLVVCTDSAVY 151 (281)
Q Consensus 130 ~l~~g~~~~~~aLVV~~e~~s~ 151 (281)
+|++|.+ +++||+++|.++.
T Consensus 101 ~I~sG~~--d~vLv~G~E~ms~ 120 (393)
T PRK05656 101 AIRCGDA--EVIIAGGQENMSL 120 (393)
T ss_pred HHHcCCC--CEEEEEEEhhhcc
Confidence 9999976 9999999998873
No 57
>PRK07108 acetyl-CoA acetyltransferase; Provisional
Probab=99.38 E-value=1.7e-12 Score=121.40 Aligned_cols=99 Identities=12% Similarity=0.125 Sum_probs=85.4
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcc-hHHHHHHHHhhcCCCCceeeecccccchHHHHHHHH
Q 023511 49 EVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKS-IKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNC 127 (281)
Q Consensus 49 ~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~-~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A 127 (281)
.++++.+|+.+|+++||+++|++|+|||.||+++.+++...|+ .+..+...+++. .++++++++++|+|++.|+.+|
T Consensus 23 ~~~~~~dL~~~A~~~aL~~agi~~~~ID~vi~G~~~~~~~~~~~~a~~i~~~lGl~--~~~p~~~V~~aCaSg~~Al~~A 100 (392)
T PRK07108 23 NMTHGATLGGHVVQHAVERAKLDPAEVEDVIMGCANPEGATGANIARQIALRAGLP--VTVPGMTVNRFCSSGLQTIALA 100 (392)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCCcEEEEEeecccccccHHHHHHHHHcCCC--CCCceeeecchhhHHHHHHHHH
Confidence 4667899999999999999999999999999999888876565 555555555442 2488999999999999999999
Q ss_pred HHHHHhCCCCCCeEEEEEeecccc
Q 023511 128 VNWVESSSWDGRYGLVVCTDSAVY 151 (281)
Q Consensus 128 ~~~l~~g~~~~~~aLVV~~e~~s~ 151 (281)
..+|++|.+ +.+|+++.|++|.
T Consensus 101 ~~~I~sG~~--d~vlagGvE~ms~ 122 (392)
T PRK07108 101 AQRVIAGEG--DVFVAGGVESISC 122 (392)
T ss_pred HHHHHCCCC--CEEEEEEEeccCC
Confidence 999999976 9999999999983
No 58
>PRK09051 beta-ketothiolase; Provisional
Probab=99.38 E-value=2e-12 Score=120.99 Aligned_cols=97 Identities=13% Similarity=0.165 Sum_probs=81.7
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcc-hHHHHHHHHhhcCCC-CceeeecccccchHHHHHHH
Q 023511 49 EVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKS-IKTFLMQIFEKFGNT-DIEGVDSTNACYGGTAALFN 126 (281)
Q Consensus 49 ~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~-~a~~i~~~l~~~g~~-~~~~~di~~~C~g~~~aL~~ 126 (281)
.+++..+|+.+|+++||+++|++|+|||.||++++++++..+. .+..+...+ |.+ ++++++++++|++|+.|+.+
T Consensus 23 ~~~~~~eL~~~A~~~AL~~agi~~~dID~vi~g~~~~~~~~~~~~a~~~~~~~---Gl~~~~p~~~V~~aCaSg~~Al~~ 99 (394)
T PRK09051 23 KDVAPTDLGATVVREALARAGVDPDQVGHVVFGHVIPTEPRDMYLSRVAAINA---GVPQETPAFNVNRLCGSGLQAIVS 99 (394)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHcCEEEEeeeccccCCCccHHHHHHHHc---CCCCCCceEEecccchHHHHHHHH
Confidence 3668999999999999999999999999999999887664443 333333333 443 58899999999999999999
Q ss_pred HHHHHHhCCCCCCeEEEEEeeccc
Q 023511 127 CVNWVESSSWDGRYGLVVCTDSAV 150 (281)
Q Consensus 127 A~~~l~~g~~~~~~aLVV~~e~~s 150 (281)
|..+|++|.+ +++||+++|++|
T Consensus 100 A~~~I~sG~~--d~vLvvG~E~mS 121 (394)
T PRK09051 100 AAQAILLGDA--DVAIGGGAESMS 121 (394)
T ss_pred HHHHHHcCCC--CEEEEEeehhcc
Confidence 9999999976 999999999987
No 59
>cd00833 PKS polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations. PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits.
Probab=99.38 E-value=1.7e-12 Score=122.17 Aligned_cols=115 Identities=14% Similarity=0.124 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCccE----EEEecccCCC-------------------CCcchHHHHHHHHhhcCCCCce
Q 023511 53 VISMSLTAVTNLLEKYKIDPKQIGR----LEVGSETVID-------------------KSKSIKTFLMQIFEKFGNTDIE 109 (281)
Q Consensus 53 ~~~la~~Aa~~aL~~a~l~~~dId~----li~~s~t~~~-------------------~~p~~a~~i~~~l~~~g~~~~~ 109 (281)
...|+.+|+++||+++|+++++++. +++++.++++ ..+..+..+...+++. -+
T Consensus 87 ~~~l~~~aa~~AL~dAgl~~~~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~gl~----g~ 162 (421)
T cd00833 87 QQRLLLEVAWEALEDAGYSPESLAGSRTGVFVGASSSDYLELLARDPDEIDAYAATGTSRAFLANRISYFFDLR----GP 162 (421)
T ss_pred HHHHHHHHHHHHHHHcCCCchhcCCCCceEEeCcCHHHHHHHHhhcccccCcccccCcchHHHHHHHHHHcCCC----CC
Confidence 5789999999999999999988774 6667655432 1133555566666543 35
Q ss_pred eeecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeeccc----------------------ccCCCCccccCcceEEE
Q 023511 110 GVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV----------------------YAEGPARPTGGAAAVVM 167 (281)
Q Consensus 110 ~~di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s----------------------~~~~~~~~~fGDGAaA~ 167 (281)
++.+.++|++++.||..|..+|++|.+ +.+||+++|... |+.....+++||||+|+
T Consensus 163 ~~~v~~acas~~~Al~~A~~~I~~G~~--d~~lvgg~~~~~~~~~~~~~~~~~~l~~~~~~~pf~~~~~g~~~geGAaal 240 (421)
T cd00833 163 SLTVDTACSSSLVALHLACQSLRSGEC--DLALVGGVNLILSPDMFVGFSKAGMLSPDGRCRPFDADADGYVRGEGVGVV 240 (421)
T ss_pred ceeeccHhHHHHHHHHHHHHHHHcCCC--CeeEEeeeeccCCHHHHHHHhhCCCCCCCCCCCCCCCCCCCeeeeceEEEE
Confidence 789999999999999999999999976 999999999753 00112467899999999
Q ss_pred EEccCC
Q 023511 168 LVGPDA 173 (281)
Q Consensus 168 ll~~~~ 173 (281)
||++.+
T Consensus 241 vL~~~~ 246 (421)
T cd00833 241 VLKRLS 246 (421)
T ss_pred EEeeHH
Confidence 999754
No 60
>PRK08313 acetyl-CoA acetyltransferase; Provisional
Probab=99.37 E-value=2.2e-12 Score=120.44 Aligned_cols=107 Identities=17% Similarity=0.108 Sum_probs=83.7
Q ss_pred eecCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCC--cchHHHHHHHHhhcCCCCceeeecc
Q 023511 37 IGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKS--KSIKTFLMQIFEKFGNTDIEGVDST 114 (281)
Q Consensus 37 ~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~--p~~a~~i~~~l~~~g~~~~~~~di~ 114 (281)
.|+|...++....+++..+|+.+|+++||+++|++++|||.|++++ ++++.. +..+..+++.||+ ....+++++
T Consensus 8 vG~g~t~~~~~~~~~s~~eL~~eAa~~Al~dAgl~~~dID~iv~~~-~~~~~~~~~~~~~~va~~LGl---~~~~~~~v~ 83 (386)
T PRK08313 8 LGTGQTKYVAKRQDVSMAGLVREAIDRALADAGLTWDDIDAVVVGK-APDFFEGVMMPELFLADALGA---TGKPLIRVH 83 (386)
T ss_pred EEeecCCcCccCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEec-cccccccccCchHHHHHhcCC---CCCceEEEe
Confidence 4666554311124678899999999999999999999999999887 454321 1233556666654 456789999
Q ss_pred cccchHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 023511 115 NACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSA 149 (281)
Q Consensus 115 ~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~ 149 (281)
++|+++..+++.|..+|++|.+ ++||||++|+.
T Consensus 84 ~~casg~~al~~A~~~I~sG~~--~~vLVvg~e~~ 116 (386)
T PRK08313 84 TAGSVGGSTAVVAASLVQSGVY--RRVLAVAWEKQ 116 (386)
T ss_pred ccCHHHHHHHHHHHHHHHCCCC--CEEEEEEEEEc
Confidence 9999999999999999999977 99999999965
No 61
>PRK06205 acetyl-CoA acetyltransferase; Provisional
Probab=99.37 E-value=1.9e-12 Score=121.55 Aligned_cols=97 Identities=15% Similarity=0.151 Sum_probs=86.0
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHH
Q 023511 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVN 129 (281)
Q Consensus 50 ~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~ 129 (281)
+++..+|+.+|+++||+++|++|+|||.||++++++....|..+..++..+++. .++++++++.+|++++.++.+|.+
T Consensus 23 ~~~~~eLa~~A~~~AL~~agl~~~dID~vv~g~~~~~~~~~~~a~~va~~~Gl~--~~~p~~~V~~~CaSg~~Al~~A~~ 100 (404)
T PRK06205 23 DVPAEELAATVIRALVERTGIDPARIDDVIFGQGYPNGEAPAIGRVAALDAGLP--VTVPGMQLDRRCGSGLQAVITAAM 100 (404)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccCCCCCChHHHHHHHHcCCC--CCCceeehhhhhhHHHHHHHHHHH
Confidence 578999999999999999999999999999999888776777777666666642 257899999999999999999999
Q ss_pred HHHhCCCCCCeEEEEEeeccc
Q 023511 130 WVESSSWDGRYGLVVCTDSAV 150 (281)
Q Consensus 130 ~l~~g~~~~~~aLVV~~e~~s 150 (281)
+|++|.+ +.+||+++|.++
T Consensus 101 ~I~sG~~--d~vLv~G~E~ms 119 (404)
T PRK06205 101 QVQTGAA--DVVIAGGAESMS 119 (404)
T ss_pred HHHcCCC--CEEEEeeehhhc
Confidence 9999976 999999999987
No 62
>PRK09052 acetyl-CoA acetyltransferase; Provisional
Probab=99.37 E-value=3.1e-12 Score=119.79 Aligned_cols=97 Identities=13% Similarity=0.124 Sum_probs=82.5
Q ss_pred CCCHHHHHHHHHHHHHHHc-CCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCC-CceeeecccccchHHHHHHHH
Q 023511 50 VEDVISMSLTAVTNLLEKY-KIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNT-DIEGVDSTNACYGGTAALFNC 127 (281)
Q Consensus 50 ~e~~~~la~~Aa~~aL~~a-~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~-~~~~~di~~~C~g~~~aL~~A 127 (281)
+++..+|+.+|++++|+++ |++|+|||.||+++++++...|.....+...+ .|.+ .+++++|+++|++|+.|+..|
T Consensus 28 ~~s~~eLa~~A~~~AL~~a~gl~~~dID~vi~g~~~~~~~~~~~~ar~~~~~--~Gl~~~~p~~~V~~aCaSg~~Al~~A 105 (399)
T PRK09052 28 NTRPDDLLAHVLRSAVAQVPGLDPKLIEDAIVGCAMPEAEQGLNVARIGALL--AGLPNSVGGVTVNRFCASGLQAVAMA 105 (399)
T ss_pred CCCHHHHHHHHHHHHHHhccCcCHHHCCEEEEEecCCCCCCCchHHHHHHHH--cCCCCCCceeeecchhhHHHHHHHHH
Confidence 4689999999999999997 99999999999999887765565555432222 2444 388999999999999999999
Q ss_pred HHHHHhCCCCCCeEEEEEeeccc
Q 023511 128 VNWVESSSWDGRYGLVVCTDSAV 150 (281)
Q Consensus 128 ~~~l~~g~~~~~~aLVV~~e~~s 150 (281)
..+|++|.+ +.+||+++|.+|
T Consensus 106 ~~~I~sG~~--d~vLv~G~E~mS 126 (399)
T PRK09052 106 ADRIRVGEA--DVMIAAGVESMS 126 (399)
T ss_pred HHHHHCCCC--CEEEEEEEeccc
Confidence 999999976 999999999987
No 63
>PRK08235 acetyl-CoA acetyltransferase; Provisional
Probab=99.37 E-value=2.6e-12 Score=120.17 Aligned_cols=97 Identities=8% Similarity=0.033 Sum_probs=80.5
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHH
Q 023511 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVN 129 (281)
Q Consensus 50 ~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~ 129 (281)
+++..+|+.+|+++||+++|++|+|||.+|+++.++....+..+..++..+++. .++++++++++|+++++|+..|..
T Consensus 23 ~~~~~eLa~~A~~~aL~~agl~~~dID~vi~g~~~~~~~~~~~~~~~~~~~Gl~--~~~p~~~V~~~CaSg~~Al~~A~~ 100 (393)
T PRK08235 23 DVKATELGGIAIKEALERANVSAEDVEEVIMGTVLQGGQGQIPSRQAARAAGIP--WEVQTETVNKVCASGLRAVTLADQ 100 (393)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecccCCCCCCHHHHHHHHcCCC--CCcceeehhhhhhHHHHHHHHHHH
Confidence 678999999999999999999999999999998865211233333344444432 258899999999999999999999
Q ss_pred HHHhCCCCCCeEEEEEeeccc
Q 023511 130 WVESSSWDGRYGLVVCTDSAV 150 (281)
Q Consensus 130 ~l~~g~~~~~~aLVV~~e~~s 150 (281)
+|++|.+ +++||+++|+++
T Consensus 101 ~I~sG~~--d~vLvvG~E~ms 119 (393)
T PRK08235 101 IIRAGDA--SVIVAGGMESMS 119 (393)
T ss_pred HHHCCCC--CEEEEEeeeccc
Confidence 9999976 999999999987
No 64
>TIGR03150 fabF beta-ketoacyl-acyl-carrier-protein synthase II. FabB sequences should fall well below the noise cutoff of this model.
Probab=99.35 E-value=1e-10 Score=109.77 Aligned_cols=164 Identities=14% Similarity=0.095 Sum_probs=106.0
Q ss_pred ceeEEeEEEEEcCCcccchhHHHhhh--CCC----Cceee-eecCceee-eeCC--------C-----CCCHHHHHHHHH
Q 023511 3 KNVGILAMDIYFPPTCVQQEALEAHD--GAS----KGKYT-IGLGQECM-AFCS--------E-----VEDVISMSLTAV 61 (281)
Q Consensus 3 ~~v~I~~ig~~lP~~~v~~~~~~~~~--~~~----~~~~~-~gi~~r~~-~~~~--------~-----~e~~~~la~~Aa 61 (281)
++|.|+|+|...|.- .+.+++.+.+ |.+ ...+. .....+.. .+.+ + -.....|+.+|+
T Consensus 1 ~~v~ItG~g~~~p~g-~~~~~~~~~l~~g~s~~~~~~~~~~~~~~~~~~g~i~~f~~~~~~~~~~~~~~~~~~~l~~~aa 79 (407)
T TIGR03150 1 RRVVVTGLGAVTPLG-NGVEEFWENLLAGKSGIGPITRFDASDLPVKIAGEVKDFDPEDYIDKKEARRMDRFIQYALAAA 79 (407)
T ss_pred CcEEEEcceEECCCc-CCHHHHHHHHHcCCCeeEECCcccccCCCCcEEEEeCCcChhhcCCHHHHhhcCHHHHHHHHHH
Confidence 468999999999987 4777766553 211 00010 00000000 0110 0 012468999999
Q ss_pred HHHHHHcCCCcCCccE----EEEecccCCC-----------------CCc---------chHHHHHHHHhhcCCCCceee
Q 023511 62 TNLLEKYKIDPKQIGR----LEVGSETVID-----------------KSK---------SIKTFLMQIFEKFGNTDIEGV 111 (281)
Q Consensus 62 ~~aL~~a~l~~~dId~----li~~s~t~~~-----------------~~p---------~~a~~i~~~l~~~g~~~~~~~ 111 (281)
++||+++|+++++||. +++++..+.. ..| ..+..+...+++. -+++
T Consensus 80 ~~Al~dAgl~~~~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~----g~~~ 155 (407)
T TIGR03150 80 KEAVEDSGLDIEEEDAERVGVIIGSGIGGLETIEEQHIVLLEKGPRRVSPFFIPMSIINMAAGQISIRYGAK----GPNH 155 (407)
T ss_pred HHHHHhcCCCcccCCccceEEEEecCCCchHHHHHHHHHHHhcCccccChhhhhcccccHHHHHHHHHhCCC----Cccc
Confidence 9999999999999886 6666533211 001 1333455555543 3467
Q ss_pred ecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeeccc----------------ccC-----------CCCccccCcce
Q 023511 112 DSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV----------------YAE-----------GPARPTGGAAA 164 (281)
Q Consensus 112 di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s----------------~~~-----------~~~~~~fGDGA 164 (281)
-+..+|++++.||..|..+|++|.+ +.+||+++|... +.+ ....+++||||
T Consensus 156 ~v~~acaSg~~Al~~A~~~I~~G~~--d~~lvgg~e~~~~~~~~~~~~~~~~ls~~~~~~~~~~~pfd~~~~g~~~gEGA 233 (407)
T TIGR03150 156 AVVTACATGTHAIGDAFRLIQRGDA--DVMIAGGAEAAITPLGIAGFAAMKALSTRNDDPEKASRPFDKDRDGFVMGEGA 233 (407)
T ss_pred ccccHHHHHHHHHHHHHHHHhcCCC--CEEEEecccCcCCHHHHHHHHHhCcccCCCCCCCcCCCCCcCCCCcEEEeceE
Confidence 8888999999999999999999976 999999998621 000 11357899999
Q ss_pred EEEEEccCC
Q 023511 165 VVMLVGPDA 173 (281)
Q Consensus 165 aA~ll~~~~ 173 (281)
+|+||++.+
T Consensus 234 aalvL~~~~ 242 (407)
T TIGR03150 234 GVLVLEELE 242 (407)
T ss_pred EEEEEeeHH
Confidence 999999754
No 65
>PRK08242 acetyl-CoA acetyltransferase; Validated
Probab=99.34 E-value=5.7e-12 Score=117.94 Aligned_cols=97 Identities=13% Similarity=0.107 Sum_probs=81.5
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcc-hHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHH
Q 023511 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKS-IKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCV 128 (281)
Q Consensus 50 ~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~-~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~ 128 (281)
+.++.+|+.+|++++|+++|++|++||.||+++.++....+. .+......+|+. .++++++|+++|+||+.|+.+|.
T Consensus 25 ~~~~~dLa~~A~~~al~~agi~p~~ID~vi~G~~~~~~~~~~~~~r~a~~~~Gl~--~~~pa~~Vn~aCaSg~~Ai~~A~ 102 (402)
T PRK08242 25 EVKPVRLAAGLLEALRDRNGLDTAAVDDVVLGCVTPVGDQGADIARTAVLAAGLP--ETVPGVQINRFCASGLEAVNLAA 102 (402)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHcCEEEEEecCCCccccccHHHHHHHHcCCC--CCCCeEEEcchhhhHHHHHHHHH
Confidence 557899999999999999999999999999999887543332 333333444442 35899999999999999999999
Q ss_pred HHHHhCCCCCCeEEEEEeeccc
Q 023511 129 NWVESSSWDGRYGLVVCTDSAV 150 (281)
Q Consensus 129 ~~l~~g~~~~~~aLVV~~e~~s 150 (281)
.+|++|.+ +.+|++++|.+|
T Consensus 103 ~~I~sG~~--d~vLv~G~E~mS 122 (402)
T PRK08242 103 AKVRSGWD--DLVIAGGVESMS 122 (402)
T ss_pred HHHHcCCC--CEEEEEEEEccC
Confidence 99999976 999999999998
No 66
>PRK06059 lipid-transfer protein; Provisional
Probab=99.33 E-value=7.9e-12 Score=117.27 Aligned_cols=96 Identities=16% Similarity=0.090 Sum_probs=80.9
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCC-CCCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHH
Q 023511 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVI-DKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCV 128 (281)
Q Consensus 50 ~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~-~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~ 128 (281)
+++..+|+++|+++||+++|++++|||.||+++..++ +..|..+.+++..++. .++++++++++|++++.+|..|.
T Consensus 20 ~~~~~~La~~A~~~Al~dAgl~~~dId~vi~~~~~~~~~~~~~~a~~va~~lG~---~~~~~~~v~~~Casg~~al~~A~ 96 (399)
T PRK06059 20 GRDFVEYGVVAARAALADAGLDWRDVQLVVGADTIRNGYPGFVAGATFAQALGW---NGAPVSSSYAACASGSQALQSAR 96 (399)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccCCccCCccHHHHHHHHhCC---CCCceecccchhHHHHHHHHHHH
Confidence 4678999999999999999999999999998766544 3234456777777765 44678999999999999999999
Q ss_pred HHHHhCCCCCCeEEEEEeeccc
Q 023511 129 NWVESSSWDGRYGLVVCTDSAV 150 (281)
Q Consensus 129 ~~l~~g~~~~~~aLVV~~e~~s 150 (281)
.+|++|.+ +++||+++|.++
T Consensus 97 ~~I~sG~~--~~vLvvg~e~~s 116 (399)
T PRK06059 97 AQILAGLC--DVALVVGADTTP 116 (399)
T ss_pred HHHHCCCC--CEEEEEEEcccC
Confidence 99999976 999999999754
No 67
>cd00826 nondecarbox_cond_enzymes nondecarboxylating condensing enzymes; In general, thiolases catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=99.32 E-value=8.8e-12 Score=116.63 Aligned_cols=97 Identities=11% Similarity=0.059 Sum_probs=81.5
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHH
Q 023511 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVN 129 (281)
Q Consensus 50 ~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~ 129 (281)
.+.+.+|+.+|+++||++++++|+|||.||+++.++++..+..+... .+..+|..++++++++++|++|+.++.+|..
T Consensus 20 ~~~~~el~~~a~~~Al~~agl~p~dID~vi~g~~~~~~~g~~~~~~~--~~~~lg~~~~p~~~V~~~Casg~~al~~A~~ 97 (393)
T cd00826 20 NDLAHEAGAKAIAAALEPAGVAAGAVEEACLGQVLGAGEGQNCAQQA--AMHAGGLQEAPAIGMNNLCGSGLRALALAMQ 97 (393)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEEccCCcccCcHHHHH--HHHcCCCCCCcEEEecchhHHHHHHHHHHHH
Confidence 35689999999999999999999999999999888775444444421 2334444668899999999999999999999
Q ss_pred HHHhCCCCCCeEEEEEeeccc
Q 023511 130 WVESSSWDGRYGLVVCTDSAV 150 (281)
Q Consensus 130 ~l~~g~~~~~~aLVV~~e~~s 150 (281)
+|++|.+ +++||+++|.++
T Consensus 98 ~I~sG~~--~~vlv~g~e~~s 116 (393)
T cd00826 98 LIAGGDA--NCILAGGFEKME 116 (393)
T ss_pred HHHCCCC--CEEEEEeeeccc
Confidence 9999976 999999999876
No 68
>PRK05790 putative acyltransferase; Provisional
Probab=99.31 E-value=1.2e-11 Score=115.73 Aligned_cols=96 Identities=9% Similarity=0.099 Sum_probs=78.9
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCC-CceeeecccccchHHHHHHHHH
Q 023511 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNT-DIEGVDSTNACYGGTAALFNCV 128 (281)
Q Consensus 50 ~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~-~~~~~di~~~C~g~~~aL~~A~ 128 (281)
+++..+|+.+|+++||+++|++|+|||.||+++.++....+..+..+...++ .+ ++++++++++|++++.+|.+|.
T Consensus 23 ~~~~~~La~~A~~~AL~dAgl~~~dID~vi~g~~~~~~~~~~~~~~~~~~~g---l~~~~~~~~v~~~Casg~~al~~A~ 99 (393)
T PRK05790 23 DVSAVELGAIVIKAALERAGVPPEQVDEVIMGQVLQAGAGQNPARQAALKAG---LPVEVPALTINKVCGSGLKAVALAA 99 (393)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCeEEEEEecCCCCCCcHHHHHHHHcC---CCCCCceeeecccchHHHHHHHHHH
Confidence 5789999999999999999999999999999887653323333333333333 33 4679999999999999999999
Q ss_pred HHHHhCCCCCCeEEEEEeeccc
Q 023511 129 NWVESSSWDGRYGLVVCTDSAV 150 (281)
Q Consensus 129 ~~l~~g~~~~~~aLVV~~e~~s 150 (281)
.+|++|.+ +++||+++|.++
T Consensus 100 ~~I~sG~~--d~vLv~G~e~~s 119 (393)
T PRK05790 100 QAIRAGDA--DIVVAGGQESMS 119 (393)
T ss_pred HHHHcCCC--CEEEEEeeeccc
Confidence 99999976 999999999875
No 69
>PRK08170 acetyl-CoA acetyltransferase; Provisional
Probab=99.28 E-value=1.7e-11 Score=115.87 Aligned_cols=97 Identities=11% Similarity=0.099 Sum_probs=82.0
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHH
Q 023511 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVN 129 (281)
Q Consensus 50 ~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~ 129 (281)
+.+..+|+.+|+++||+++|++++|||.||+++.++....+..+..++..+++. .++++++++++|++++.++..|..
T Consensus 24 ~~~~~~L~~~A~~~Al~dAgl~~~dID~vi~g~~~~~~~~~~~a~~v~~~lGl~--~~~p~~~v~~~CaSg~~al~~A~~ 101 (426)
T PRK08170 24 PFSASDLAVAAGRALLNRQPFAPDDLDEVILGCAMPSPDEANIARVVALRLGCG--EKVPAWTVQRNCASGMQALDSAAA 101 (426)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccCCCCcChHHHHHHHHhCcC--CCceeeeccchhhHHHHHHHHHHH
Confidence 357899999999999999999999999999987765433455666566655542 247899999999999999999999
Q ss_pred HHHhCCCCCCeEEEEEeeccc
Q 023511 130 WVESSSWDGRYGLVVCTDSAV 150 (281)
Q Consensus 130 ~l~~g~~~~~~aLVV~~e~~s 150 (281)
+|++|.+ +++||+++|.++
T Consensus 102 ~I~sG~~--d~vLv~G~E~ms 120 (426)
T PRK08170 102 NIALGRA--DLVLAGGVEAMS 120 (426)
T ss_pred HHHCCCC--CEEEEEEEeccc
Confidence 9999976 999999999876
No 70
>PRK06289 acetyl-CoA acetyltransferase; Provisional
Probab=99.28 E-value=1.4e-11 Score=115.65 Aligned_cols=95 Identities=16% Similarity=0.159 Sum_probs=77.3
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCC-----cchHHHHHHHHhhcCCCCceeeecccccchHHHH
Q 023511 49 EVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKS-----KSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAA 123 (281)
Q Consensus 49 ~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~-----p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~a 123 (281)
.+++..+|+.+|+++||+++|++|+|||.+|++++++++.. |..... ...+.. ++++++++++|++++.|
T Consensus 22 ~~~s~~eLa~eA~~~AL~dAgl~~~dID~vi~g~~~~~~~~~~~~~~~~~~~--~~~~~~---g~~~~~v~~~Casg~~a 96 (403)
T PRK06289 22 EGRDFADLTREVVDGTLAAAGVDADDIEVVHVGNFFGELFAGQGHLGAMPAT--VHPALW---GVPASRHEAACASGSVA 96 (403)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccccccccccccchHHHH--HhhcCC---CCceeecccccHHHHHH
Confidence 56789999999999999999999999999999987766432 211111 122222 35789999999999999
Q ss_pred HHHHHHHHHhCCCCCCeEEEEEeeccc
Q 023511 124 LFNCVNWVESSSWDGRYGLVVCTDSAV 150 (281)
Q Consensus 124 L~~A~~~l~~g~~~~~~aLVV~~e~~s 150 (281)
|.+|..+|++|.+ ++|||+++|+++
T Consensus 97 l~~Aa~~I~sG~~--~~VLvvg~e~~s 121 (403)
T PRK06289 97 TLAAMADLRAGRY--DVALVVGVELMK 121 (403)
T ss_pred HHHHHHHHHcCCC--CEEEEEEEEecC
Confidence 9999999999977 999999999865
No 71
>PRK06954 acetyl-CoA acetyltransferase; Provisional
Probab=99.28 E-value=2.1e-11 Score=114.26 Aligned_cols=96 Identities=13% Similarity=0.120 Sum_probs=80.9
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCC-CceeeecccccchHHHHHHHHH
Q 023511 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNT-DIEGVDSTNACYGGTAALFNCV 128 (281)
Q Consensus 50 ~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~-~~~~~di~~~C~g~~~aL~~A~ 128 (281)
+.+..+|+.+|++++|+++|++|+|||.+|+++..++.. +.....+..++. |.+ ++++++++++|++++.|+..|.
T Consensus 28 ~~~~~eL~~~a~~~aL~~Agi~~~dID~vi~G~~~~~~~--~~~~~~~~~l~a-g~~~~~p~~~V~~aCaSG~~Av~~A~ 104 (397)
T PRK06954 28 SLTAPQLGAAAIAAAVERAGLKPEQIDEVVMGCVLPAGQ--GQAPARQAALGA-GLPLSVGCTTVNKMCGSGMRAAMFAH 104 (397)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHcCEEEEEecCCCcc--chHHHHHHHHcC-CCCCCccEeeccccchHHHHHHHHHH
Confidence 567899999999999999999999999999998776543 333333344543 544 4889999999999999999999
Q ss_pred HHHHhCCCCCCeEEEEEeeccc
Q 023511 129 NWVESSSWDGRYGLVVCTDSAV 150 (281)
Q Consensus 129 ~~l~~g~~~~~~aLVV~~e~~s 150 (281)
.+|++|.+ +.+||+++|.+|
T Consensus 105 ~~I~sG~~--d~vLv~G~E~ms 124 (397)
T PRK06954 105 DMLVAGSV--DVIVAGGMESMT 124 (397)
T ss_pred HHHHCCCC--CEEEEEeeeccC
Confidence 99999976 999999999987
No 72
>PRK06065 acetyl-CoA acetyltransferase; Provisional
Probab=99.26 E-value=3.1e-11 Score=112.77 Aligned_cols=107 Identities=15% Similarity=0.057 Sum_probs=85.4
Q ss_pred eeecCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCC--CcchHHHHHHHHhhcCCCCceeeec
Q 023511 36 TIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDK--SKSIKTFLMQIFEKFGNTDIEGVDS 113 (281)
Q Consensus 36 ~~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~--~p~~a~~i~~~l~~~g~~~~~~~di 113 (281)
..|+|...+... .+++..+|+.+|+++||+++|++++|||.+|+++ +++.. .+..+..+++.++.. +.+++++
T Consensus 13 IvG~g~t~~~~~-~~~~~~~L~~~A~~~Al~dagl~~~dID~~i~~~-~~~~~~~~~~~a~~l~~~lG~~---~~~~~~V 87 (392)
T PRK06065 13 VIGAGLTLFRRR-LLETPQELAWEAASKALDEAGLELKDIDCVVIGS-APDAFDGVHMKGEYLSHGSGGI---RKPVSRV 87 (392)
T ss_pred EEEecccCCcCC-CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEec-cCCcccccccHHHHHHHHcCCC---CCCeEEE
Confidence 357776653222 4678899999999999999999999999999876 33332 355666666666654 3568899
Q ss_pred ccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 023511 114 TNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSA 149 (281)
Q Consensus 114 ~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~ 149 (281)
.++|+++..+|..|..+|++|.+ ++||||++|++
T Consensus 88 ~~~gasG~~al~~A~~~I~sG~a--d~vLVvg~e~~ 121 (392)
T PRK06065 88 YVGGATGVMTAIAGWYHVASGLC--QKVLAVAEEKM 121 (392)
T ss_pred ecCchhHHHHHHHHHHHHhCCCC--CEEEEEEeecc
Confidence 99999999999999999999977 99999999873
No 73
>PRK07314 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.24 E-value=5e-10 Score=105.41 Aligned_cols=226 Identities=13% Similarity=0.129 Sum_probs=133.7
Q ss_pred ceeEEeEEEEEcCCcccchhHHHhhh--CCC----Cceee-e-------e-c---CceeeeeCCC----CCCHHHHHHHH
Q 023511 3 KNVGILAMDIYFPPTCVQQEALEAHD--GAS----KGKYT-I-------G-L---GQECMAFCSE----VEDVISMSLTA 60 (281)
Q Consensus 3 ~~v~I~~ig~~lP~~~v~~~~~~~~~--~~~----~~~~~-~-------g-i---~~r~~~~~~~----~e~~~~la~~A 60 (281)
++|.|+|+|...|-- .+.+++.+.+ |.+ ...+. . | + ....+ +++. -.....|+..|
T Consensus 2 ~~v~ItG~g~~~p~g-~~~~~~w~~l~~g~~~~~~~~~~~~~~~~~~~~g~i~~f~~~~~-~~~~~~~~~~~~~~l~~~a 79 (411)
T PRK07314 2 RRVVVTGLGAVSPLG-NDVESTWKNLLAGKSGIGPITHFDTSDLAVKIAGEVKDFNPDDY-MSRKEARRMDRFIQYGIAA 79 (411)
T ss_pred CcEEEEcceEECCCc-CCHHHHHHHHHhCCCcEEECCcccccCCCccEEEEeCCcChhhc-CCHHHhhcCCHHHHHHHHH
Confidence 589999999999986 4677766553 211 00010 0 0 0 00000 1110 01356899999
Q ss_pred HHHHHHHcCCCcCCcc----EEEEecccCC---------------------CCCc-----chHHHHHHHHhhcCCCCcee
Q 023511 61 VTNLLEKYKIDPKQIG----RLEVGSETVI---------------------DKSK-----SIKTFLMQIFEKFGNTDIEG 110 (281)
Q Consensus 61 a~~aL~~a~l~~~dId----~li~~s~t~~---------------------~~~p-----~~a~~i~~~l~~~g~~~~~~ 110 (281)
+++||+++|++++++| .++++|..+. +..| ..+.++...+++.| ++
T Consensus 80 a~~Al~dAGl~~~~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~G----p~ 155 (411)
T PRK07314 80 AKQAVEDAGLEITEENADRIGVIIGSGIGGLETIEEQHITLLEKGPRRVSPFFVPMAIINMAAGHVSIRYGAKG----PN 155 (411)
T ss_pred HHHHHHHcCCCcccCCcccEEEEEecCcCChHHHHHHHHHHHhcCccccChhhhhhhcchHHHHHHHHHhCCCC----cc
Confidence 9999999999998887 4666654321 0011 13445566666543 45
Q ss_pred eecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeeccc-------c---------c--C---------CCCccccCcc
Q 023511 111 VDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV-------Y---------A--E---------GPARPTGGAA 163 (281)
Q Consensus 111 ~di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s-------~---------~--~---------~~~~~~fGDG 163 (281)
+-+..+|++++.||..|..+|++|.+ +.+||.++|... + . + ....+++|||
T Consensus 156 ~tv~~acaSgl~Al~~A~~~I~~G~~--d~vlvgg~~~~~~~~~~~~~~~~~~ls~~~~~p~~~~~pfd~~~dG~~~geG 233 (411)
T PRK07314 156 HSIVTACATGAHAIGDAARLIAYGDA--DVMVAGGAEAAITPLGIAGFAAARALSTRNDDPERASRPFDKDRDGFVMGEG 233 (411)
T ss_pred ccchhhhHHHHHHHHHHHHHHhcCCC--CEEEEeeecccCCHHHHHHHHHhccccCCCCCCCcCcCCCcCCCCCEeEEce
Confidence 77778999999999999999999976 999999988632 1 0 0 0135789999
Q ss_pred eEEEEEccCCC---c--cccccccccccCCcccccccCCCCcccCCCCcccHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 023511 164 AVVMLVGPDAP---V--AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSL 238 (281)
Q Consensus 164 AaA~ll~~~~~---~--~i~~~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 238 (281)
|+|+||++.+. . .+.....+. +... +.... .. |... .. ....+++ ++|+++|+++
T Consensus 234 AaavvL~~~~~A~~~g~~~~a~I~g~-~~~~-d~~~~---~~-~~~~----~~----~~~~a~~------~Al~~agi~~ 293 (411)
T PRK07314 234 AGILVLEELEHAKARGAKIYAEVVGY-GMTG-DAYHM---TA-PAPD----GE----GAARAMK------LALKDAGINP 293 (411)
T ss_pred EEEEEEeeHHHHHHCCCeEEEEEEEE-EEcC-CCCCC---CC-CCCC----cH----HHHHHHH------HHHHHcCCCH
Confidence 99999997532 1 111111111 1100 00000 00 1000 00 1111222 3467799999
Q ss_pred CCCcEEecCCCChhHHHH
Q 023511 239 SNADYFVFHSPYNKLVQK 256 (281)
Q Consensus 239 ~did~~i~Hq~n~~i~~~ 256 (281)
+|||++-.|-.+....+.
T Consensus 294 ~dId~v~~hgtgt~~~d~ 311 (411)
T PRK07314 294 EDIDYINAHGTSTPAGDK 311 (411)
T ss_pred HHCCEEEccccCCccccH
Confidence 999999999877655543
No 74
>PRK06445 acetyl-CoA acetyltransferase; Provisional
Probab=99.22 E-value=4.2e-11 Score=112.16 Aligned_cols=98 Identities=9% Similarity=0.070 Sum_probs=79.5
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHH
Q 023511 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVN 129 (281)
Q Consensus 50 ~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~ 129 (281)
+.+..+|+.+|+++||+++|++|+|||.+|+++..++...|.........+..++ .++++++++++|++++.++.+|..
T Consensus 29 ~~~~~~L~~~a~~~AL~~agl~~~dID~vi~g~~~~~~~~~~~~~~~~~l~a~~~-~~~p~~~V~~~CaSg~~ai~~A~~ 107 (394)
T PRK06445 29 NIRPEELAAMLINRLIEKTGIKPEEIDDIITGCALQVGENWLYGGRHPIFLARLP-YNIPAMAVDRQCASSLTTVSIGAM 107 (394)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCeeEEEeecCCCcccccHHHHHHHHcCCC-CCCcchhhhhhhHHHHHHHHHHHH
Confidence 4678999999999999999999999999999988776433322221112333333 358899999999999999999999
Q ss_pred HHHhCCCCCCeEEEEEeeccc
Q 023511 130 WVESSSWDGRYGLVVCTDSAV 150 (281)
Q Consensus 130 ~l~~g~~~~~~aLVV~~e~~s 150 (281)
+|++|.+ +++||++.|+++
T Consensus 108 ~I~sG~~--d~vLv~G~e~ms 126 (394)
T PRK06445 108 EIATGMA--DIVIAGGVEHMT 126 (394)
T ss_pred HHHcCCC--CEEEEeeecccc
Confidence 9999977 999999999876
No 75
>PRK07516 acetyl-CoA acetyltransferase; Provisional
Probab=99.22 E-value=8.8e-11 Score=109.85 Aligned_cols=108 Identities=17% Similarity=0.150 Sum_probs=80.6
Q ss_pred eecCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCC--cchHHHHHHHHhhcCCCCceeeecc
Q 023511 37 IGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKS--KSIKTFLMQIFEKFGNTDIEGVDST 114 (281)
Q Consensus 37 ~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~--p~~a~~i~~~l~~~g~~~~~~~di~ 114 (281)
.|.+...+.. ..+++..+|+.+|+++||+++|++++|||.|++++..+.... +..+..+...+ |....++++++
T Consensus 7 vg~g~tpfgr-~~~~~~~eL~~eA~~~AL~dAgl~~~dId~vi~g~~~~~~~~~~~~~~~~~~~~~---gl~~~p~~~v~ 82 (389)
T PRK07516 7 VGWAHTPFGK-LDAETLESLIVRVAREALAHAGIAAGDVDGIFLGHFNAGFSPQDFPASLVLQADP---ALRFKPATRVE 82 (389)
T ss_pred EeCCcceeee-cCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEEecCCccccccchhHHHHHhc---CCCCCceeeec
Confidence 3555444322 235778999999999999999999999999999876433211 11111111222 33567889999
Q ss_pred cccchHHHHHHHHHHHHHhCCCCCCeEEEEEeeccc
Q 023511 115 NACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV 150 (281)
Q Consensus 115 ~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s 150 (281)
++|++++.||..|..+|++|.+ +++||+++|+++
T Consensus 83 ~~CaSg~~Al~~A~~~I~sG~~--d~vLvvg~e~~s 116 (389)
T PRK07516 83 NACATGSAAVYAALDAIEAGRA--RIVLVVGAEKMT 116 (389)
T ss_pred cccHHHHHHHHHHHHHHHCCCC--CEEEEEEehhhc
Confidence 9999999999999999999977 999999999865
No 76
>PF00108 Thiolase_N: Thiolase, N-terminal domain; InterPro: IPR020616 Two different types of thiolase [, , ] are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2.3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008152 metabolic process; PDB: 1PXT_B 1AFW_B 1WL4_A 1WL5_A 4E1L_B 1WDK_D 1WDM_D 2D3T_D 1WDL_C 2WUA_B ....
Probab=99.22 E-value=7.8e-11 Score=104.56 Aligned_cols=99 Identities=18% Similarity=0.123 Sum_probs=81.7
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHH
Q 023511 49 EVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCV 128 (281)
Q Consensus 49 ~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~ 128 (281)
.+.++.+|+.+|++.+|++++++|++||.|++++..+....+..+..+...+++. ..++++.+++.|++++.|+..|.
T Consensus 22 ~~~~~~~L~~~a~~~al~~~~i~~~~Id~v~~G~~~~~~~g~~~ar~~~l~aGl~--~~vp~~~V~~~CaSG~~Av~~a~ 99 (264)
T PF00108_consen 22 ADVSPEDLAAEAVKAALERAGIDPEDIDAVIVGNVLQEGEGQNIARQAALAAGLP--ESVPATTVNRACASGLQAVHLAA 99 (264)
T ss_dssp TTS-HHHHHHHHHHHHHHHHTSHGGGEEEEEEE-SSSCTTTCHHHHHHHHHTTS---TTSEEEEEE-GGGHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhcccchhhhhhcCcccccccccchhhhhhhhhhcccc--cccceeeehhhhhHHHHHHHHhh
Confidence 3568999999999999999999999999999999887665566666555545543 36899999999999999999999
Q ss_pred HHHHhCCCCCCeEEEEEeecccc
Q 023511 129 NWVESSSWDGRYGLVVCTDSAVY 151 (281)
Q Consensus 129 ~~l~~g~~~~~~aLVV~~e~~s~ 151 (281)
..|++|.+ +.+|+++.|.+|.
T Consensus 100 ~~I~sG~~--dvvlagGvE~mS~ 120 (264)
T PF00108_consen 100 MAIASGEA--DVVLAGGVESMSR 120 (264)
T ss_dssp HHHHTTS---SEEEEEEEEETTT
T ss_pred hhhcCCCc--cEEEEeccccccc
Confidence 99999976 9999999999984
No 77
>PRK07103 polyketide beta-ketoacyl:acyl carrier protein synthase; Validated
Probab=99.21 E-value=2.5e-10 Score=107.47 Aligned_cols=175 Identities=18% Similarity=0.112 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHHHcCCC---cCCccEEEEeccc---------------CCCCCcc---------hHHHHHHHHhhcCC
Q 023511 53 VISMSLTAVTNLLEKYKID---PKQIGRLEVGSET---------------VIDKSKS---------IKTFLMQIFEKFGN 105 (281)
Q Consensus 53 ~~~la~~Aa~~aL~~a~l~---~~dId~li~~s~t---------------~~~~~p~---------~a~~i~~~l~~~g~ 105 (281)
...|+..|+++||+++|++ +++|++++.++.. +.+..|. .+..|...+++.|
T Consensus 80 ~~~lal~Aa~eAl~dAgl~~~~~~riGvivG~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lgl~G- 158 (410)
T PRK07103 80 SAQAALAAAREAWRDAALGPVDPDRIGLVVGGSNLQQREQALVHETYRDRPAFLRPSYGLSFMDTDLVGLCSEQFGIRG- 158 (410)
T ss_pred HHHHHHHHHHHHHHhcCcCCCCCCCEEEEEccCCcchHHHHHHHHHhccCccccChhhhhhhcchHHHHHHHHHhCCCC-
Confidence 5679999999999999986 5677777754421 2222221 3344455555533
Q ss_pred CCceeeecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeecc-c------c----------------------cCCCC
Q 023511 106 TDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSA-V------Y----------------------AEGPA 156 (281)
Q Consensus 106 ~~~~~~di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~-s------~----------------------~~~~~ 156 (281)
+++.++++|++++.||..|..+|++|.+ +.+||+++|.. + + +.+..
T Consensus 159 ---~~~tv~~acas~~~Al~~A~~~I~~G~~--d~~lv~g~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~rPfd~~~d 233 (410)
T PRK07103 159 ---EGFTVGGASASGQLAVIQAARLVQSGSV--DACIAVGALMDLSYWECQALRSLGAMGSDRFADEPEAACRPFDQDRD 233 (410)
T ss_pred ---CcccccchhHHHHHHHHHHHHHHHcCCC--CEEEEecccccCCHHHHHHHHHccccccCccCCCcccCcCCCCCCCC
Confidence 4688999999999999999999999976 99999888631 1 0 00123
Q ss_pred ccccCcceEEEEEccCCC----c-cccccccccccCCcccccccCCCCcccCCCCcccHHHHHHHHHHHHHHHHHHHHHh
Q 023511 157 RPTGGAAAVVMLVGPDAP----V-AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKL 231 (281)
Q Consensus 157 ~~~fGDGAaA~ll~~~~~----~-~i~~~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 231 (281)
.+++||||+|+||++.+. . .+.....+.... .+. ... ... +... ...+++ ++|
T Consensus 234 G~v~gEGaaalvLe~~~~A~~~g~~i~a~I~g~~~~-~d~-------~~~--~~p--~~~~----~~~a~~------~Al 291 (410)
T PRK07103 234 GFIYGEACGAVVLESAESARRRGARPYAKLLGWSMR-LDA-------NRG--PDP--SLEG----EMRVIR------AAL 291 (410)
T ss_pred CeeEeeeEEEEEEccHHHHHHCCCceEEEEEEEEEe-cCC-------CCC--CCC--CHHH----HHHHHH------HHH
Confidence 579999999999997532 1 122111111110 000 000 000 1111 112222 346
Q ss_pred hcCCCCCCCCcEEecCCCChhHHH
Q 023511 232 EGKQFSLSNADYFVFHSPYNKLVQ 255 (281)
Q Consensus 232 ~~~g~~~~did~~i~Hq~n~~i~~ 255 (281)
+++|++++|||++..|-.+....+
T Consensus 292 ~~Agi~~~dId~v~~hgtgt~~~D 315 (410)
T PRK07103 292 RRAGLGPEDIDYVNPHGTGSPLGD 315 (410)
T ss_pred HHcCCCHHHCCEEEccCCCCCCCC
Confidence 779999999999999987776543
No 78
>PRK06333 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.19 E-value=9.8e-10 Score=103.89 Aligned_cols=114 Identities=15% Similarity=0.138 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCc-c----EEEEecccCCC---------------------CCc-----chHHHHHHHHh
Q 023511 53 VISMSLTAVTNLLEKYKIDPKQI-G----RLEVGSETVID---------------------KSK-----SIKTFLMQIFE 101 (281)
Q Consensus 53 ~~~la~~Aa~~aL~~a~l~~~dI-d----~li~~s~t~~~---------------------~~p-----~~a~~i~~~l~ 101 (281)
...|+..|+++||+++|++++++ + .+++++..+.+ ..| ..+..|...++
T Consensus 82 ~~~l~~~aa~~Al~dAgl~~~~~~~~~~~Gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~g 161 (424)
T PRK06333 82 FILFAMAAAKEALAQAGWDPDTLEDRERTATIIGSGVGGFPAIAEAVRTLDSRGPRRLSPFTIPSFLTNMAAGHVSIRYG 161 (424)
T ss_pred HHHHHHHHHHHHHHhcCCCccccCCcccEEEEEecCcccHHHHHHHHHHHHhcCCcccChhHHhhhhhhHHHHHHHHHhC
Confidence 56789999999999999987766 2 45555543221 011 12344555555
Q ss_pred hcCCCCceeeecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeeccc-------c----------c-----------C
Q 023511 102 KFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV-------Y----------A-----------E 153 (281)
Q Consensus 102 ~~g~~~~~~~di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s-------~----------~-----------~ 153 (281)
+.| +++-+..+|++++.||..|..+|++|.+ +.+||.++|... + . .
T Consensus 162 l~G----p~~~v~~aCaSg~~Al~~A~~~I~~G~~--d~alvgG~e~~~~~~~~~~f~~~~~l~~~~~~~p~~~~~Pfd~ 235 (424)
T PRK06333 162 FKG----PLGAPVTACAAGVQAIGDAARLIRSGEA--DVAVCGGTEAAIDRVSLAGFAAARALSTRFNDAPEQASRPFDR 235 (424)
T ss_pred CCC----CCccccchhHHHHHHHHHHHHHHHcCCC--CEEEEeeecccCCHHHHHHHHHcccccccCCCCCCcCCCCCCC
Confidence 533 4677889999999999999999999976 999999999731 0 0 0
Q ss_pred CCCccccCcceEEEEEccC
Q 023511 154 GPARPTGGAAAVVMLVGPD 172 (281)
Q Consensus 154 ~~~~~~fGDGAaA~ll~~~ 172 (281)
....++.||||+++||++.
T Consensus 236 ~~~G~~~gEGaa~lvLe~~ 254 (424)
T PRK06333 236 DRDGFVMGEGAGILVIETL 254 (424)
T ss_pred CCCCeEEecceEEEEEeeH
Confidence 1135789999999999974
No 79
>PRK09185 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed
Probab=99.16 E-value=1.6e-09 Score=101.39 Aligned_cols=134 Identities=16% Similarity=0.176 Sum_probs=87.3
Q ss_pred chHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeeccc--------------------
Q 023511 91 SIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV-------------------- 150 (281)
Q Consensus 91 ~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s-------------------- 150 (281)
.++.+|...+++.| +++.+..+|++++.||..|..+|++|.+ +.+||+++|..+
T Consensus 138 ~~a~~ia~~lgl~G----p~~~i~~acas~~~Al~~A~~~I~~G~~--d~vlvgg~d~~~~~~~~~~~~~~~l~~~~~~P 211 (392)
T PRK09185 138 SLADFLRAYLGLSG----PAYTISTACSSSAKVFASARRLLEAGLC--DAAIVGGVDSLCRLTLNGFNSLESLSPQPCRP 211 (392)
T ss_pred HHHHHHHHHhCCCC----CcccccChhHHHHHHHHHHHHHHHcCCC--CEEEEeeccccChHHHHHHHhccccCCCccCC
Confidence 46777777777644 5788889999999999999999999976 999999998532
Q ss_pred ccCCCCccccCcceEEEEEccCCCc--cccccccccccCCcccccccCCCCcccCCCCcccHHHHHHHHHHHHHHHHHHH
Q 023511 151 YAEGPARPTGGAAAVVMLVGPDAPV--AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKY 228 (281)
Q Consensus 151 ~~~~~~~~~fGDGAaA~ll~~~~~~--~i~~~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (281)
|+.+...+++|||++++||++.... .+.+.-..++.. ....| .. ... ....+++
T Consensus 212 fd~~~~G~~~gEGaa~vVLe~~~~~~~~I~g~g~~~d~~---~~~~~-------~~----~~~----~~~~a~~------ 267 (392)
T PRK09185 212 FSANRDGINIGEAAAFFLLEREDDAAVALLGVGESSDAH---HMSAP-------HP----EGL----GAILAMQ------ 267 (392)
T ss_pred CcCCCCccceeceEEEEEEEEcCCCcEEEEEEEEeCCCC---CCCCC-------CC----CHH----HHHHHHH------
Confidence 1111246899999999999987321 222210011110 00001 00 011 1112222
Q ss_pred HHhhcCCCCCCCCcEEecCCCChhHH
Q 023511 229 EKLEGKQFSLSNADYFVFHSPYNKLV 254 (281)
Q Consensus 229 ~~l~~~g~~~~did~~i~Hq~n~~i~ 254 (281)
++|+++|++++|||++..|-.+.+..
T Consensus 268 ~Al~~Agl~~~dId~v~~hgtgt~~~ 293 (392)
T PRK09185 268 QALADAGLAPADIGYINLHGTATPLN 293 (392)
T ss_pred HHHHHcCCCHHHccEEEeCCCCCcCC
Confidence 34677999999999999998776643
No 80
>PRK08722 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.16 E-value=3.5e-09 Score=99.86 Aligned_cols=164 Identities=13% Similarity=0.083 Sum_probs=105.0
Q ss_pred ceeEEeEEEEEcCCcccchhHHHhhh--CCC---C-ceee-eecCcee----------eeeCCC----CCCHHHHHHHHH
Q 023511 3 KNVGILAMDIYFPPTCVQQEALEAHD--GAS---K-GKYT-IGLGQEC----------MAFCSE----VEDVISMSLTAV 61 (281)
Q Consensus 3 ~~v~I~~ig~~lP~~~v~~~~~~~~~--~~~---~-~~~~-~gi~~r~----------~~~~~~----~e~~~~la~~Aa 61 (281)
++|.|+|+|...|-- .+.+++.+.+ |.+ + +.+. .....+. ..+... -.....++..|+
T Consensus 4 ~~VvItG~g~~~p~g-~~~~~~w~~L~~g~s~i~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~d~~~~~~l~a~ 82 (414)
T PRK08722 4 RRVVVTGMGMLSPVG-NTVESSWKALLAGQSGIVNIEHFDTTNFSTRFAGLVKDFNCEEYMSKKDARKMDLFIQYGIAAG 82 (414)
T ss_pred CCEEEEeeEEECCCC-CCHHHHHHHHHhCCCeeeecCccccccCCCceeEEcCCCChhHcCCHHHHhhcCHHHHHHHHHH
Confidence 589999999999987 4777776653 111 0 1110 0000000 000000 012456889999
Q ss_pred HHHHHHcCCCcCCcc----EEEEecccCCC-----------------C--------Cc-chHHHHHHHHhhcCCCCceee
Q 023511 62 TNLLEKYKIDPKQIG----RLEVGSETVID-----------------K--------SK-SIKTFLMQIFEKFGNTDIEGV 111 (281)
Q Consensus 62 ~~aL~~a~l~~~dId----~li~~s~t~~~-----------------~--------~p-~~a~~i~~~l~~~g~~~~~~~ 111 (281)
.+||+++|+++.+.+ .++++|..+.+ . .| ..+..+...+++.| +++
T Consensus 83 ~~Al~dAGl~~~~~~~~r~Gv~vGt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is~~~gl~G----p~~ 158 (414)
T PRK08722 83 IQALDDSGLEVTEENAHRIGVAIGSGIGGLGLIEAGHQALVEKGPRKVSPFFVPSTIVNMIAGNLSIMRGLRG----PNI 158 (414)
T ss_pred HHHHHHcCCCccccCCCCEEEEEeeCCCcchhHHHHHHHHHhcCcccCCchhcccccccHHHHHHHHHhCCCC----Ccc
Confidence 999999999754332 24445543211 0 11 25555666666654 368
Q ss_pred ecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeeccc-------c---------c--C----C-----CCccccCcce
Q 023511 112 DSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV-------Y---------A--E----G-----PARPTGGAAA 164 (281)
Q Consensus 112 di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s-------~---------~--~----~-----~~~~~fGDGA 164 (281)
-++.+|++++.||..|..+|+.|.. +.+||.++|... | . + + ...++.||||
T Consensus 159 ti~~aCas~~~Al~~A~~~i~~G~~--d~~lvgg~d~~~~~~~~~~f~~~~~ls~~~~~p~~~~rpfd~~~~G~~~gEGa 236 (414)
T PRK08722 159 AISTACTTGLHNIGHAARMIAYGDA--DAMVAGGAEKASTPLGMAGFGAAKALSTRNDEPQKASRPWDKDRDGFVLGDGA 236 (414)
T ss_pred ccccccHHHHHHHHHHHHHHHcCCC--CEEEEecccccCCHHHHHHHHHcCCcccCCCCCccccCcCcCCCCceEeeceE
Confidence 8899999999999999999999976 999999998732 1 0 0 1 1367899999
Q ss_pred EEEEEccCC
Q 023511 165 VVMLVGPDA 173 (281)
Q Consensus 165 aA~ll~~~~ 173 (281)
+++||++.+
T Consensus 237 aalvLe~~~ 245 (414)
T PRK08722 237 GMMVLEEYE 245 (414)
T ss_pred EEEEEccHH
Confidence 999999753
No 81
>PRK08439 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.15 E-value=4.7e-09 Score=98.78 Aligned_cols=164 Identities=16% Similarity=0.166 Sum_probs=107.0
Q ss_pred ceeEEeEEEEEcCCcccchhHHHhhh--CCC----Ccee-----ee---e-cCc-ee-eeeCC----CCCCHHHHHHHHH
Q 023511 3 KNVGILAMDIYFPPTCVQQEALEAHD--GAS----KGKY-----TI---G-LGQ-EC-MAFCS----EVEDVISMSLTAV 61 (281)
Q Consensus 3 ~~v~I~~ig~~lP~~~v~~~~~~~~~--~~~----~~~~-----~~---g-i~~-r~-~~~~~----~~e~~~~la~~Aa 61 (281)
++|.|+|+|...|-- .+.+++.+.+ |.+ .+.+ .. + +.. .. ..+.. .-.....|+..|+
T Consensus 2 ~~v~ItG~g~vsp~G-~~~~~~~~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~f~~~~~~~~~~~~~~~~~~~l~~~Aa 80 (406)
T PRK08439 2 KRVVVTGIGMINSLG-LNKESSFKAICNGECGIKKITLFDASDFPVQIAGEITDFDPTEVMDPKEVKKADRFIQLGLKAA 80 (406)
T ss_pred CCEEEEeeEEECCCc-CCHHHHHHHHHcCCCceEeCCCccccCCCCceeEEcCCcChhhcCCHHHHhhcCHHHHHHHHHH
Confidence 579999999999987 4667666543 211 0111 00 0 100 00 00000 0112578999999
Q ss_pred HHHHHHcCCCcCCcc----EEEEecccCCC-------------------------CCc-chHHHHHHHHhhcCCCCceee
Q 023511 62 TNLLEKYKIDPKQIG----RLEVGSETVID-------------------------KSK-SIKTFLMQIFEKFGNTDIEGV 111 (281)
Q Consensus 62 ~~aL~~a~l~~~dId----~li~~s~t~~~-------------------------~~p-~~a~~i~~~l~~~g~~~~~~~ 111 (281)
.+||+++|+++++++ .+++++..+.. ..| ..+..|...++..| +++
T Consensus 81 ~~AL~dAGl~~~~~~~~r~Gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~G----p~~ 156 (406)
T PRK08439 81 REAMKDAGFLPEELDAERFGVSSASGIGGLPNIEKNSIICFEKGPRKISPFFIPSALVNMLGGFISIEHGLKG----PNL 156 (406)
T ss_pred HHHHHHcCCCcccCCCCCEEEEEecCCccHHHHHHHHHHHHhcCccccCchhcccccccHHHHHHHHHhCCCC----Ccc
Confidence 999999999987775 24444422110 011 35666677777654 357
Q ss_pred ecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeecc-c------c--------------------cCCCCccccCcce
Q 023511 112 DSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSA-V------Y--------------------AEGPARPTGGAAA 164 (281)
Q Consensus 112 di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~-s------~--------------------~~~~~~~~fGDGA 164 (281)
.+..+|++++.||..|..+|++|.+ +.+||+++|.. + + +.....+++|+||
T Consensus 157 ~~~~acas~~~Al~~A~~~i~~G~~--d~~lv~g~d~~l~~~~~~~f~~~~~ls~~~~~p~~~~rpfd~~~~G~v~gEGa 234 (406)
T PRK08439 157 SSVTACAAGTHAIIEAVKTIMLGGA--DKMLVVGAESAICPVGIGGFAAMKALSTRNDDPKKASRPFDKDRDGFVMGEGA 234 (406)
T ss_pred ccccHhHHHHHHHHHHHHHHHcCCC--CEEEEecchhccCHHHHHHHHHhCccccCCCCCccCcCCccCCCCcEEeeCce
Confidence 8889999999999999999999976 99999999862 1 0 0012467899999
Q ss_pred EEEEEccCC
Q 023511 165 VVMLVGPDA 173 (281)
Q Consensus 165 aA~ll~~~~ 173 (281)
+++||++.+
T Consensus 235 ~~lvLe~~~ 243 (406)
T PRK08439 235 GALVLEEYE 243 (406)
T ss_pred EEEEEccHH
Confidence 999999743
No 82
>PLN02287 3-ketoacyl-CoA thiolase
Probab=99.15 E-value=2.4e-10 Score=108.55 Aligned_cols=98 Identities=11% Similarity=0.153 Sum_probs=80.9
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHH-HHHHHHhhcCCCCceeeecccccchHHHHHHHH
Q 023511 49 EVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKT-FLMQIFEKFGNTDIEGVDSTNACYGGTAALFNC 127 (281)
Q Consensus 49 ~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~-~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A 127 (281)
.+.+..+|+.+|+++||+++|++++|||.+|+++.++....+.... ++...+++. ..+++++++.+|++++.++..|
T Consensus 67 ~~~s~~eLa~eA~~~AL~dAgl~~~dID~vv~G~~~~~~~~~~~~~r~~a~~~Gl~--~~~pa~~V~~~CaSG~~Ai~~A 144 (452)
T PLN02287 67 KDTYPDDLLAPVLKAVVEKTGLNPSEVGDIVVGTVLAPGSQRANECRMAAFYAGFP--ETVPVRTVNRQCSSGLQAVADV 144 (452)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeecCcccccchHHHHHHHHCCCC--CCcceEEEeccCchHHHHHHHH
Confidence 3678999999999999999999999999999988766654444333 333334432 1478999999999999999999
Q ss_pred HHHHHhCCCCCCeEEEEEeeccc
Q 023511 128 VNWVESSSWDGRYGLVVCTDSAV 150 (281)
Q Consensus 128 ~~~l~~g~~~~~~aLVV~~e~~s 150 (281)
..+|++|.+ +.+||++.|.++
T Consensus 145 a~~I~sG~~--dvvLv~GvE~mS 165 (452)
T PLN02287 145 AAAIKAGFY--DIGIGAGVESMT 165 (452)
T ss_pred HHHHHcCCC--CeEEEEeEEecC
Confidence 999999976 999999999887
No 83
>PLN02836 3-oxoacyl-[acyl-carrier-protein] synthase
Probab=99.14 E-value=3.9e-09 Score=100.21 Aligned_cols=115 Identities=14% Similarity=0.106 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHcCCCcC-----CccEEEEecccCCC-----------------CCc---------chHHHHHHHHh
Q 023511 53 VISMSLTAVTNLLEKYKIDPK-----QIGRLEVGSETVID-----------------KSK---------SIKTFLMQIFE 101 (281)
Q Consensus 53 ~~~la~~Aa~~aL~~a~l~~~-----dId~li~~s~t~~~-----------------~~p---------~~a~~i~~~l~ 101 (281)
...|+..|+.+||+++|+++. +...++++|..+.. ..| ..+..|...++
T Consensus 93 ~~~~~~~aa~~Al~dAg~~~~~~~~~~~~Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~n~~a~~is~~~g 172 (437)
T PLN02836 93 FIGYALCAADEALSDARWLPSEDEAKERTGVSIGGGIGSITDILEAAQLICEKRLRRLSPFFVPRILINMAAGHVSIRYG 172 (437)
T ss_pred HHHHHHHHHHHHHHHcCCCcccccCCcCEEEEEeeccCcHHHHHHHHHHHHhcCCCCCChhhhhhhcccHHHHHHHHHhC
Confidence 567999999999999998542 34566666543221 011 13445556565
Q ss_pred hcCCCCceeeecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeeccc-------c---------------------cC
Q 023511 102 KFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV-------Y---------------------AE 153 (281)
Q Consensus 102 ~~g~~~~~~~di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s-------~---------------------~~ 153 (281)
+.| +++-+.++|++++.||..|..+|++|.+ +.+||.++|... + +.
T Consensus 173 l~G----p~~tv~~acaSg~~Al~~A~~~I~~G~~--d~~lvgg~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~pfd~ 246 (437)
T PLN02836 173 FQG----PNHAAVTACATGAHSIGDAFRMIQFGDA--DVMVAGGTESSIDALSIAGFSRSRALSTKFNSCPTEASRPFDC 246 (437)
T ss_pred CCC----ceeceeChhHHHHHHHHHHHHHHHcCCC--CEEEEccccccCCHHHHHHHHHhhhhhcccCCCcccccCCccc
Confidence 543 4688899999999999999999999976 899998887521 0 00
Q ss_pred CCCccccCcceEEEEEccCC
Q 023511 154 GPARPTGGAAAVVMLVGPDA 173 (281)
Q Consensus 154 ~~~~~~fGDGAaA~ll~~~~ 173 (281)
....+++||||+|+||++.+
T Consensus 247 ~~~G~~~gEGaaalVLe~~~ 266 (437)
T PLN02836 247 DRDGFVIGEGAGVLVLEELE 266 (437)
T ss_pred CCCCeeeecCEEEEEEeeHH
Confidence 12367899999999999753
No 84
>PRK07661 acetyl-CoA acetyltransferase; Provisional
Probab=99.14 E-value=2.4e-10 Score=106.88 Aligned_cols=96 Identities=8% Similarity=0.028 Sum_probs=81.5
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCC-CcchHHHHHHHHhhcCCC-CceeeecccccchHHHHHHHH
Q 023511 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDK-SKSIKTFLMQIFEKFGNT-DIEGVDSTNACYGGTAALFNC 127 (281)
Q Consensus 50 ~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~-~p~~a~~i~~~l~~~g~~-~~~~~di~~~C~g~~~aL~~A 127 (281)
+.+..+|+.+|+++||+++|+.++|||.+|+++..++.. .+..+.++...+|+ + .++++.++++|++++.|+..|
T Consensus 24 ~~~~~eLa~~A~~~AL~~ag~~~~dID~vi~g~~~~~~~~g~~~a~~~~~~lGl---~~~~p~~~V~~aCaSG~~Al~~A 100 (391)
T PRK07661 24 TVRPDDLGALVVKETLKRAGNYEGPIDDLIIGCAMPEAEQGLNMARNIGALAGL---PYTVPAITINRYCSSGLQSIAYG 100 (391)
T ss_pred CCCHHHHHHHHHHHHHHhcCCChhHCCEEEEEeccccccccchHHHHHHHHcCC---CCCcceeehhhhhhHHHHHHHHH
Confidence 346899999999999999998889999999997766543 25666656666664 4 488999999999999999999
Q ss_pred HHHHHhCCCCCCeEEEEEeeccc
Q 023511 128 VNWVESSSWDGRYGLVVCTDSAV 150 (281)
Q Consensus 128 ~~~l~~g~~~~~~aLVV~~e~~s 150 (281)
..+|++|.+ +.+||++.|.++
T Consensus 101 ~~~I~sG~~--d~vLv~G~E~ms 121 (391)
T PRK07661 101 AERIMLGHS--EAVIAGGAESMS 121 (391)
T ss_pred HHHHHcCCC--CEEEEEEEeecc
Confidence 999999976 999999999887
No 85
>PRK05952 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.13 E-value=3.6e-09 Score=98.64 Aligned_cols=222 Identities=12% Similarity=0.120 Sum_probs=128.5
Q ss_pred ceeEEeEEEEEcCCcccchhHHHhhh--CCC----Cceee--eecCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCc--
Q 023511 3 KNVGILAMDIYFPPTCVQQEALEAHD--GAS----KGKYT--IGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDP-- 72 (281)
Q Consensus 3 ~~v~I~~ig~~lP~~~v~~~~~~~~~--~~~----~~~~~--~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~-- 72 (281)
++|.|.|+|...|--. .+++.+.+ |.+ ...+. .....+. +.........++..|+++||+++|+++
T Consensus 2 ~rVvITG~G~vsp~G~--~~~~~~~l~~G~sgi~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~Al~dagl~~~~ 77 (381)
T PRK05952 2 MKVVVTGIGLVSALGD--LEQSWQRLLQGKSGIKLHQPFPELPPLPLGL--IGNQPSSLEDLTKTVVTAALKDAGLTPPL 77 (381)
T ss_pred CeEEEEeeEEECcccC--HHHHHHHHHcCCCCeEeCCccccccccccee--eccccccccHHHHHHHHHHHHhcCCCCCC
Confidence 5899999999999985 56655543 211 00110 0000000 000001233477789999999999964
Q ss_pred CCccEEEEecccCC--------------------CC--------Cc-chHHHHHHHHhhcCCCCceeeecccccchHHHH
Q 023511 73 KQIGRLEVGSETVI--------------------DK--------SK-SIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAA 123 (281)
Q Consensus 73 ~dId~li~~s~t~~--------------------~~--------~p-~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~a 123 (281)
++++.++ +|..+. +. .| ..+..+...++..| +++-+..+|++++.|
T Consensus 78 ~~~Gv~~-Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~~~~~G----p~~ti~~aCasg~~A 152 (381)
T PRK05952 78 TDCGVVI-GSSRGCQGQWEKLARQMYQGDDSPDEELDLENWLDTLPHQAAIAAARQIGTQG----PVLAPMAACATGLWA 152 (381)
T ss_pred CCEEEEE-eeCcchHHHHHHHHHHHhhcCCccccccCHHHHHHhcccHHHHHHHHHhCCCC----ccccccchhHHHHHH
Confidence 5566555 443221 00 11 23455566666554 468889999999999
Q ss_pred HHHHHHHHHhCCCCCCeEEEEEeec-cc------c--------------cCCCCccccCcceEEEEEccCCC---c--cc
Q 023511 124 LFNCVNWVESSSWDGRYGLVVCTDS-AV------Y--------------AEGPARPTGGAAAVVMLVGPDAP---V--AF 177 (281)
Q Consensus 124 L~~A~~~l~~g~~~~~~aLVV~~e~-~s------~--------------~~~~~~~~fGDGAaA~ll~~~~~---~--~i 177 (281)
|..|..+|+.|.+ +.+||.++|. .+ + +.+...+++||||+++||++.+. . .+
T Consensus 153 i~~A~~~i~~G~~--d~~lvgg~d~~~~~~~~~~~~~~~~ls~~~~rPfd~~r~G~v~gEGaa~lvLe~~~~A~~rg~~i 230 (381)
T PRK05952 153 IAQGVELIQTGQC--QRVIAGAVEAPITPLTLAGFQQMGALAKTGAYPFDRQREGLVLGEGGAILVLESAELAQKRGAKI 230 (381)
T ss_pred HHHHHHHHHcCCC--CEEEEccccccCCHHHHHHHHhcCCcCCCCCCCCCCCCCCccccccEEEEEEeeHHHHHhCCCce
Confidence 9999999999976 9999999985 22 1 01124679999999999997531 1 12
Q ss_pred cccccccccCCcccccccCCCCcccCCCCcccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcEEecCCCChhHHH
Q 023511 178 ESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQ 255 (281)
Q Consensus 178 ~~~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~did~~i~Hq~n~~i~~ 255 (281)
.....+.... ...... ..|.. +.. ....+++ ++|+++|++++|||++-.|-.+.+..+
T Consensus 231 ~a~I~g~~~~-~d~~~~-----~~~~~----~~~----~~~~ai~------~Al~~agi~p~dId~i~~hgtgt~~~D 288 (381)
T PRK05952 231 YGQILGFGLT-CDAYHM-----SAPEP----DGK----SAIAAIQ------QCLARSGLTPEDIDYIHAHGTATRLND 288 (381)
T ss_pred EEEEEEEEec-CCCCCC-----CCCCC----CHH----HHHHHHH------HHHHHhCCCHHHeeEEEccCCCCCCCc
Confidence 1111111110 000000 00000 111 1122222 346779999999999999977665544
No 86
>PLN02787 3-oxoacyl-[acyl-carrier-protein] synthase II
Probab=99.11 E-value=3.4e-09 Score=102.63 Aligned_cols=223 Identities=17% Similarity=0.198 Sum_probs=129.8
Q ss_pred ceeEEeEEEEEcCCcccchhHHHhhh--C---CC-Ccee-----eeec-C-ceeee----eCC----CCCCHHHHHHHHH
Q 023511 3 KNVGILAMDIYFPPTCVQQEALEAHD--G---AS-KGKY-----TIGL-G-QECMA----FCS----EVEDVISMSLTAV 61 (281)
Q Consensus 3 ~~v~I~~ig~~lP~~~v~~~~~~~~~--~---~~-~~~~-----~~gi-~-~r~~~----~~~----~~e~~~~la~~Aa 61 (281)
++|.|+|+|...|-- .+.+++.+.+ | +. .+.+ ...+ + .+.+. +.. .-.....++..|+
T Consensus 129 ~rVvITG~G~vtp~G-~~~~~~w~~L~~G~s~i~~~~~f~~~~~~~~~ag~i~~f~~~~~l~~k~~r~md~~~~~al~Aa 207 (540)
T PLN02787 129 RRVVVTGMGVVSPLG-HDPDVFYNNLLEGVSGISEIERFDCSQFPTRIAGEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 207 (540)
T ss_pred CCEEEEeeEEECCCC-CCHHHHHHHHHcCCCcccccCccchhhCCccccccccccChhhcCCHHHHHhCCHHHHHHHHHH
Confidence 479999999999987 4677766653 1 11 1111 1000 0 00000 000 0012456889999
Q ss_pred HHHHHHcCCCcC--------CccEEEEecccCCC----------------CCc---------chHHHHHHHHhhcCCCCc
Q 023511 62 TNLLEKYKIDPK--------QIGRLEVGSETVID----------------KSK---------SIKTFLMQIFEKFGNTDI 108 (281)
Q Consensus 62 ~~aL~~a~l~~~--------dId~li~~s~t~~~----------------~~p---------~~a~~i~~~l~~~g~~~~ 108 (281)
++||+++|++++ .+ .|+++|..+.. ..| ..+.+|...++..|
T Consensus 208 ~eAL~dAGl~~~~~~~~~~~r~-GV~vGt~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~~gl~G---- 282 (540)
T PLN02787 208 KKALADGGITEDVMKELDKTKC-GVLIGSAMGGMKVFNDAIEALRISYRKMNPFCVPFATTNMGSAMLAMDLGWMG---- 282 (540)
T ss_pred HHHHHHcCCCcccccccCCCce-EEEEEeccchHHHHHHHHHHHhhccccCCcchhhhhcccHHHHHHHHHhCCCC----
Confidence 999999999764 23 34555543211 011 12345555565544
Q ss_pred eeeecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeecc-c------c---------c--C----C-----CCccccC
Q 023511 109 EGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSA-V------Y---------A--E----G-----PARPTGG 161 (281)
Q Consensus 109 ~~~di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~-s------~---------~--~----~-----~~~~~fG 161 (281)
+.+-++.+|++++.||..|..+|+.|.+ +.+||.++|.. + + . + + ...+++|
T Consensus 283 p~~tistACASs~~Ai~~A~~~Ir~G~a--D~aLvGG~d~~l~p~~~~~f~~~~aLS~~~~~p~~~~rPFD~~rdGfv~G 360 (540)
T PLN02787 283 PNYSISTACATSNFCILNAANHIIRGEA--DVMLCGGSDAAIIPIGLGGFVACRALSQRNDDPTKASRPWDMNRDGFVMG 360 (540)
T ss_pred CccccccccccHHHHHHHHHHHHHcCCC--CEEEEeccccccCHHHHHHHHHHHHhhccCCCcccccCCcccCCCCcccc
Confidence 3678889999999999999999999976 99999999852 1 0 0 0 1 2468899
Q ss_pred cceEEEEEccCCC----c-ccccccccccc-CCcccccccCCCCcccCCCCcccHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 023511 162 AAAVVMLVGPDAP----V-AFESKLRGSHM-SHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQ 235 (281)
Q Consensus 162 DGAaA~ll~~~~~----~-~i~~~~~~s~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 235 (281)
+||+++||++.+. . .+...+.+... .+......| ..++ . .+. ..+. ++|+++|
T Consensus 361 EGAa~lVLE~~e~A~~rGa~IyA~I~G~g~s~Da~~~t~p-------~p~g----~----g~~---~am~---~AL~~AG 419 (540)
T PLN02787 361 EGAGVLLLEELEHAKKRGANIYAEFLGGSFTCDAYHMTEP-------HPEG----A----GVI---LCIE---KALAQSG 419 (540)
T ss_pred cceEEEEEeeHHHHHHCCCeeEEEEEEEEEecCCCCCCCC-------CcCH----H----HHH---HHHH---HHHHHcC
Confidence 9999999997431 1 23222222111 111111111 1111 1 111 2222 3467799
Q ss_pred CCCCCCcEEecCCCChhHH
Q 023511 236 FSLSNADYFVFHSPYNKLV 254 (281)
Q Consensus 236 ~~~~did~~i~Hq~n~~i~ 254 (281)
++++||||+-.|--+.+.-
T Consensus 420 l~p~dIdyInaHGTGT~~g 438 (540)
T PLN02787 420 VSKEDVNYINAHATSTKAG 438 (540)
T ss_pred CCHHHCcEEEccCccCCCC
Confidence 9999999999998665443
No 87
>PRK09116 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.08 E-value=1.4e-08 Score=95.55 Aligned_cols=162 Identities=15% Similarity=0.067 Sum_probs=102.6
Q ss_pred ceeEEeEEEEEcCCcccchhHHHhhh--CCC-----Ccee-eeecCceeee-eCC--------C-----CCCHHHHHHHH
Q 023511 3 KNVGILAMDIYFPPTCVQQEALEAHD--GAS-----KGKY-TIGLGQECMA-FCS--------E-----VEDVISMSLTA 60 (281)
Q Consensus 3 ~~v~I~~ig~~lP~~~v~~~~~~~~~--~~~-----~~~~-~~gi~~r~~~-~~~--------~-----~e~~~~la~~A 60 (281)
++|.|+|+|...|-- .+.+++.+.+ |.+ +++- ..++..+.-. +.+ . -.....|+..|
T Consensus 2 ~~VvITG~g~vtp~G-~~~~~~~~~L~~g~s~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~r~~~~~~~~al~a 80 (405)
T PRK09116 2 RRVVVTGMGGVTALG-EDWQTIAARLKAGRNAVRRMPEWDRYDGLNTRLAAPIDDFELPAHYTRKKIRSMGRVSLMATRA 80 (405)
T ss_pred CCEEEEeeEEECCCC-CCHHHHHHHHHcCCCCEEeCCchhhccCCCCceEEEecCcChhHhcCHHHHhhCCHHHHHHHHH
Confidence 589999999999987 4667766543 111 1110 0011000000 100 0 01246789999
Q ss_pred HHHHHHHcCCCc------CCccEEEEecccCCC-----------------C--------Cc-chHHHHHHHHhhcCCCCc
Q 023511 61 VTNLLEKYKIDP------KQIGRLEVGSETVID-----------------K--------SK-SIKTFLMQIFEKFGNTDI 108 (281)
Q Consensus 61 a~~aL~~a~l~~------~dId~li~~s~t~~~-----------------~--------~p-~~a~~i~~~l~~~g~~~~ 108 (281)
+++||+++|+.. +++++ +++|..+.. . .| ..+..|...++..|
T Consensus 81 a~~Al~dAGl~~~~~~~~~r~Gv-~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is~~~~~~G---- 155 (405)
T PRK09116 81 SELALEDAGLLGDPILTDGRMGI-AYGSSTGSTDPIGAFGTMLLEGSMSGITATTYVRMMPHTTAVNVGLFFGLKG---- 155 (405)
T ss_pred HHHHHHHcCCCCccccCCCcEEE-EEeecccchHHHHHHHHHHhhcCccccChhhhhhhcccHHHHHHHHHhCCCC----
Confidence 999999999842 33444 445433210 1 12 14555666666654
Q ss_pred eeeecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeeccc------c---------c--C---------CCCccccCc
Q 023511 109 EGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV------Y---------A--E---------GPARPTGGA 162 (281)
Q Consensus 109 ~~~di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s------~---------~--~---------~~~~~~fGD 162 (281)
+++-+..+|++++.||..|..+|+.|++ +.+||.++|..+ + . + +...+++|+
T Consensus 156 p~~ti~~acas~~~Al~~A~~~I~~G~~--d~~lvgg~d~~~~~~~~~f~~l~~~~~~~~~~~~~~rPfd~~~~G~v~gE 233 (405)
T PRK09116 156 RVIPTSSACTSGSQGIGYAYEAIKYGYQ--TVMLAGGAEELCPTEAAVFDTLFATSTRNDAPELTPRPFDANRDGLVIGE 233 (405)
T ss_pred CcccccchhhhHHHHHHHHHHHHHcCCC--CEEEEecchhcChHHHHHHHHhhhhccCCCCCCCCCCCCcCCCCCEeeec
Confidence 3688899999999999999999999976 999998888632 0 0 0 124678999
Q ss_pred ceEEEEEccC
Q 023511 163 AAVVMLVGPD 172 (281)
Q Consensus 163 GAaA~ll~~~ 172 (281)
||+++||++.
T Consensus 234 Ga~~~vLe~~ 243 (405)
T PRK09116 234 GAGTLVLEEL 243 (405)
T ss_pred cEEEEEEccH
Confidence 9999999974
No 88
>PRK08256 lipid-transfer protein; Provisional
Probab=99.07 E-value=7.5e-10 Score=103.67 Aligned_cols=93 Identities=24% Similarity=0.150 Sum_probs=75.3
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHH
Q 023511 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVN 129 (281)
Q Consensus 50 ~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~ 129 (281)
..+..+|+.+|+++||+++|++++|||.+++++..++... ...+... +|..++++++++.+|++++.++..|..
T Consensus 19 ~~~~~~La~~A~~~Al~dAGl~~~dID~~~~g~~~~~~~~---~~~~~~~---lGl~~~~~~~v~~~caSg~~ai~~A~~ 92 (391)
T PRK08256 19 SWDYPDMAAEAGRAALADAGIDYDAVQQAYVGYVYGDSTS---GQRALYE---VGMTGIPIVNVNNNCSTGSTALFLARQ 92 (391)
T ss_pred CCCHHHHHHHHHHHHHHHcCCChHHCCeeEEEEEeCCcch---hHHHHHH---cCCCCCCCcccccccHHHHHHHHHHHH
Confidence 4678999999999999999999999999998776554321 1122233 344456788999999999999999999
Q ss_pred HHHhCCCCCCeEEEEEeeccc
Q 023511 130 WVESSSWDGRYGLVVCTDSAV 150 (281)
Q Consensus 130 ~l~~g~~~~~~aLVV~~e~~s 150 (281)
+|++|.+ +++||+++|.++
T Consensus 93 ~I~sG~~--d~vLv~g~e~~s 111 (391)
T PRK08256 93 AVRSGAA--DCALALGFEQMQ 111 (391)
T ss_pred HHHCCCC--CEEEEEEEeecc
Confidence 9999977 999999988764
No 89
>PRK07851 acetyl-CoA acetyltransferase; Provisional
Probab=99.07 E-value=7.3e-10 Score=104.16 Aligned_cols=96 Identities=10% Similarity=0.101 Sum_probs=79.0
Q ss_pred CCCHHHHHHHHHHHHHHHc-CCCcCCccEEEEecccCCC-CCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHH
Q 023511 50 VEDVISMSLTAVTNLLEKY-KIDPKQIGRLEVGSETVID-KSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNC 127 (281)
Q Consensus 50 ~e~~~~la~~Aa~~aL~~a-~l~~~dId~li~~s~t~~~-~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A 127 (281)
+.+..+|+.+|+++||+++ |++|+|||.+|+++..+.. ..+..+..+...+++ ++++++.++++|+++..++..|
T Consensus 24 ~~~~~eL~~~A~~~AL~da~gl~~~dID~vv~g~~~~~~~~g~~~~~~~a~~lGl---~~~p~~~v~~~caSG~~av~~A 100 (406)
T PRK07851 24 DMRPDDLAAQMVRAALDKVPALDPTDIDDLMLGCGLPGGEQGFNMARVVAVLLGY---DFLPGTTVNRYCSSSLQTTRMA 100 (406)
T ss_pred CCCHHHHHHHHHHHHHHhccCCCHHHCCEEEEEcccccccccCCHHHHHHHHcCC---CCCCeeeeeccchhHHHHHHHH
Confidence 4678999999999999997 9999999999987644332 124455555565655 4477899999999999999999
Q ss_pred HHHHHhCCCCCCeEEEEEeeccc
Q 023511 128 VNWVESSSWDGRYGLVVCTDSAV 150 (281)
Q Consensus 128 ~~~l~~g~~~~~~aLVV~~e~~s 150 (281)
..+|++|.+ +.+||++.|+++
T Consensus 101 a~~I~sG~~--d~vLv~G~e~~s 121 (406)
T PRK07851 101 FHAIKAGEG--DVFISAGVETVS 121 (406)
T ss_pred HHHHHCCCC--CEEEEeeEEecc
Confidence 999999976 999999999876
No 90
>PF00109 ketoacyl-synt: Beta-ketoacyl synthase, N-terminal domain; InterPro: IPR014030 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the N-terminal domain of beta-ketoacyl-ACP synthases. ; PDB: 1J3N_B 3KZU_C 1W0I_A 2IX4_A 1F91_B 2BYZ_D 2AQB_C 2BZ3_C 1H4F_C 2VB9_B ....
Probab=99.06 E-value=8.8e-09 Score=90.36 Aligned_cols=113 Identities=22% Similarity=0.200 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHcCCCcCC------ccEEEEecccCCC---------------C--------Cc-chHHHHHHHHhh
Q 023511 53 VISMSLTAVTNLLEKYKIDPKQ------IGRLEVGSETVID---------------K--------SK-SIKTFLMQIFEK 102 (281)
Q Consensus 53 ~~~la~~Aa~~aL~~a~l~~~d------Id~li~~s~t~~~---------------~--------~p-~~a~~i~~~l~~ 102 (281)
...|+..|+.+||+++|+++++ +.+++ +|..+++ . .| ..+..|...+++
T Consensus 87 ~~~~~l~aa~~Al~dAg~~~~~~~~~~r~gv~~-G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~~gl 165 (254)
T PF00109_consen 87 QSRLALAAAREALEDAGLDPDDLDGERRVGVFV-GSSSGDYEFYRALDEDGETPRDVSPWFVPNTLPNSAAGRIAILFGL 165 (254)
T ss_dssp HHHHHHHHHHHHHHHHTSTGGGHTGGGTEEEEE-EESSSHHHHHHHHHHHTTCGGGSHTTHHHHHSTTHHHHHHHHHHTB
T ss_pred hhhHHHHHhhhhcccccccccccccccceeecc-ccccccccccccccccccccccccccccCcccccccccchhhhcCC
Confidence 6789999999999999999853 44444 5544421 0 11 245566666666
Q ss_pred cCCCCceeeecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEee-ccc------c-------cC--------CCCcccc
Q 023511 103 FGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTD-SAV------Y-------AE--------GPARPTG 160 (281)
Q Consensus 103 ~g~~~~~~~di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e-~~s------~-------~~--------~~~~~~f 160 (281)
.| +++-+.++|++++.||..|..+|++|.+ +.+||.++| ..+ + .. ....+++
T Consensus 166 ~G----~~~tv~~acaSgl~Al~~A~~~I~~G~~--d~~lvgg~d~~~~~~~~~~~~~~~~~s~~~~~~pf~~~~~G~v~ 239 (254)
T PF00109_consen 166 RG----PSYTVSTACASGLAALEAAYRAIRSGEA--DVALVGGVDAPLSPFILAGFSALGALSADGPCRPFDPFADGFVL 239 (254)
T ss_dssp -S----SEEEEE-GGGHHHHHHHHHHHHHHTTSS--SEEEEEEEE--SSHHHHHHHHHTTBB-TTSGGGSTBTTB-SB-B
T ss_pred CC----ccccccccccccccccchhccccccccc--cccccccccccccccccccccccccccccccccccCCCCCCEEE
Confidence 55 3677889999999999999999999976 999999999 333 1 11 1246899
Q ss_pred CcceEEEEEccC
Q 023511 161 GAAAVVMLVGPD 172 (281)
Q Consensus 161 GDGAaA~ll~~~ 172 (281)
|+||+++||++.
T Consensus 240 gEGa~~~vLe~~ 251 (254)
T PF00109_consen 240 GEGAGALVLERL 251 (254)
T ss_dssp B-EEEEEEEEEH
T ss_pred ECceEEEEEEEh
Confidence 999999999863
No 91
>cd00832 CLF Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria. CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine.
Probab=99.05 E-value=9.1e-09 Score=96.60 Aligned_cols=221 Identities=13% Similarity=0.067 Sum_probs=128.0
Q ss_pred ceeEEeEEEEEcCCcccchhHHHhhh--CCC----Cceee-eecCce------ee----eeCC----CCCCHHHHHHHHH
Q 023511 3 KNVGILAMDIYFPPTCVQQEALEAHD--GAS----KGKYT-IGLGQE------CM----AFCS----EVEDVISMSLTAV 61 (281)
Q Consensus 3 ~~v~I~~ig~~lP~~~v~~~~~~~~~--~~~----~~~~~-~gi~~r------~~----~~~~----~~e~~~~la~~Aa 61 (281)
++|.|+|+|...|-- .+.+++.+.+ |.+ .+.+. .+...+ .+ .++. .-.....|+..|+
T Consensus 1 ~~VvItG~G~vsp~G-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~d~~~~~~l~aa 79 (399)
T cd00832 1 RRAVVTGIGVVAPNG-LGVEEYWKAVLDGRSGLGPITRFDPSGYPARLAGEVPDFDAAEHLPGRLLPQTDRMTRLALAAA 79 (399)
T ss_pred CCEEEEeeEEeCCCC-CCHHHHHHHHHhCCCeEeeCCccccccCCCceeEEeCCcChhhcCCHHHHhhCCHHHHHHHHHH
Confidence 468999999999986 3667666543 211 01110 000000 00 0000 0122567899999
Q ss_pred HHHHHHcCCCcCCcc----EEEEecccCCC-----------------CCc---------chHHHHHHHHhhcCCCCceee
Q 023511 62 TNLLEKYKIDPKQIG----RLEVGSETVID-----------------KSK---------SIKTFLMQIFEKFGNTDIEGV 111 (281)
Q Consensus 62 ~~aL~~a~l~~~dId----~li~~s~t~~~-----------------~~p---------~~a~~i~~~l~~~g~~~~~~~ 111 (281)
.+||+++|+++++++ .|+++|..+.+ ..| ..+..|...++..| +++
T Consensus 80 ~eAl~dAGl~~~~~~~~r~Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~G----p~~ 155 (399)
T cd00832 80 DWALADAGVDPAALPPYDMGVVTASAAGGFEFGQRELQKLWSKGPRHVSAYQSFAWFYAVNTGQISIRHGMRG----PSG 155 (399)
T ss_pred HHHHHHcCCCccccCCCceEEEEccCCccHHHHHHHHHHHHhcCccccChhhhhhhhhhHHHHHHHHHhCCCC----Ccc
Confidence 999999999876543 34555543221 011 13344555555543 467
Q ss_pred ecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeeccc-------c--------cC-----------CCCccccCcceE
Q 023511 112 DSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV-------Y--------AE-----------GPARPTGGAAAV 165 (281)
Q Consensus 112 di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s-------~--------~~-----------~~~~~~fGDGAa 165 (281)
-+..+|++++.||..|..+|+.| . +.+|+.++|... + .. +...+++|+||+
T Consensus 156 ti~~acaS~~~Al~~A~~~i~~G--~-d~~i~gg~d~~~~p~~~~~~~~~~~ls~~~~p~~~~rPFd~~~~G~~~gEGa~ 232 (399)
T cd00832 156 VVVAEQAGGLDALAQARRLVRRG--T-PLVVSGGVDSALCPWGWVAQLSSGRLSTSDDPARAYLPFDAAAAGYVPGEGGA 232 (399)
T ss_pred cccchhHHHHHHHHHHHHHHHcC--C-CeEEEEeeccccCHHHHHHHHhccccCCCCCCCCCcCCCcCCCCCEeeeceEE
Confidence 78899999999999999999999 6 788888887622 0 00 124678999999
Q ss_pred EEEEccCCC----c-cccccccccccCCcccccccCCCCcccCCCCcccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 023511 166 VMLVGPDAP----V-AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSN 240 (281)
Q Consensus 166 A~ll~~~~~----~-~i~~~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~d 240 (281)
++||++.+. . .+.....+. +..... ...+. . ......+++ ++|+++|++++|
T Consensus 233 ~lvLe~~~~A~~rg~~i~a~i~g~-~~~~d~-------~~~~~-----~----~~~~~~a~~------~al~~ag~~~~~ 289 (399)
T cd00832 233 ILVLEDAAAARERGARVYGEIAGY-AATFDP-------PPGSG-----R----PPGLARAIR------LALADAGLTPED 289 (399)
T ss_pred EEEEeeHHHHHHCCCeEEEEEEeE-EEcCCC-------CCCCC-----C----HHHHHHHHH------HHHHHcCCCHHH
Confidence 999997532 1 222221111 110000 00000 0 112222222 346779999999
Q ss_pred CcEEecCCCChhHH
Q 023511 241 ADYFVFHSPYNKLV 254 (281)
Q Consensus 241 id~~i~Hq~n~~i~ 254 (281)
|||+..|-.+.+..
T Consensus 290 i~~v~~hgtgt~~~ 303 (399)
T cd00832 290 VDVVFADAAGVPEL 303 (399)
T ss_pred ccEEEeccCcCCCC
Confidence 99999997655443
No 92
>PRK06157 acetyl-CoA acetyltransferase; Validated
Probab=99.02 E-value=2.4e-09 Score=100.43 Aligned_cols=108 Identities=19% Similarity=0.171 Sum_probs=82.2
Q ss_pred eecCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCceeeecccc
Q 023511 37 IGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNA 116 (281)
Q Consensus 37 ~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~ 116 (281)
.|.+...+.. ..+.+..+|+.+|+++||+++|++++|||.+++++...++........+.+.+++ +..+++.+.++
T Consensus 12 vG~g~tp~~~-~~~~~~~~L~~ea~~~AL~dagl~~~dID~v~vg~~~~~~~~~~~~~~~a~~lGl---~~~~~~~v~~~ 87 (398)
T PRK06157 12 LGMGCTKFGE-RWDAGAEDLMVEAFLEALADAGIEPKDIDAAWFGTHYDEIGSGKSGTPLSRALRL---PNIPVTRVENF 87 (398)
T ss_pred EEeccccccc-cCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccccccccchhHHHHHHcCC---CCCCEEEEecc
Confidence 4555444211 1345689999999999999999999999999988754332111223445565554 34678889999
Q ss_pred cchHHHHHHHHHHHHHhCCCCCCeEEEEEeeccc
Q 023511 117 CYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV 150 (281)
Q Consensus 117 C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s 150 (281)
|++++.+++.|...|++|.+ +.+||+++|+++
T Consensus 88 c~sg~~ai~~A~~~I~sG~~--d~vlv~G~e~~s 119 (398)
T PRK06157 88 CATGSEAFRGAVYAVASGAY--DIALALGVEKLK 119 (398)
T ss_pred cHHHHHHHHHHHHHHHCCCC--CEEEEEEEeecc
Confidence 99999999999999999976 999999999865
No 93
>PTZ00455 3-ketoacyl-CoA thiolase; Provisional
Probab=99.01 E-value=2.1e-09 Score=101.84 Aligned_cols=99 Identities=15% Similarity=0.107 Sum_probs=80.1
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCC--ccEEEEecccCCC--CCcchHHHHHHHHhhc----CCCCceeeecccccchHH
Q 023511 50 VEDVISMSLTAVTNLLEKYKIDPKQ--IGRLEVGSETVID--KSKSIKTFLMQIFEKF----GNTDIEGVDSTNACYGGT 121 (281)
Q Consensus 50 ~e~~~~la~~Aa~~aL~~a~l~~~d--Id~li~~s~t~~~--~~p~~a~~i~~~l~~~----g~~~~~~~di~~~C~g~~ 121 (281)
+.+..+|+.+|++++|+++|++++| ||.+|+++..... ..+..+..+...+++. |...++++.++++|++++
T Consensus 45 ~~s~~eL~~~a~~~al~~agl~~~d~~ID~vi~G~~~~~~~~~~~~~a~~~~~~~gl~~~~~gl~~~p~~~V~~~caSG~ 124 (438)
T PTZ00455 45 NKTLEELLATAIQGTLENTGLDGKAALVDKVVVGNFLGELFSSQGHLGPAAVGSLGQSGASNALLYKPAMRVEGACASGG 124 (438)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCcCEEEEEeccccccccccchHHHHHHhccCcccccccCCCceeEEECcCHHHH
Confidence 5578999999999999999999999 9999988753322 1234454444444443 444678899999999999
Q ss_pred HHHHHHHHHHHhCCCCCCeEEEEEeeccc
Q 023511 122 AALFNCVNWVESSSWDGRYGLVVCTDSAV 150 (281)
Q Consensus 122 ~aL~~A~~~l~~g~~~~~~aLVV~~e~~s 150 (281)
.|+..|..+|++|.+ +.+||++.|+++
T Consensus 125 ~Ai~~A~~~I~sG~~--dvvlv~G~E~ms 151 (438)
T PTZ00455 125 LAVQSAWEALLAGTS--DIALVVGVEVQT 151 (438)
T ss_pred HHHHHHHHHHHCCCC--CEEEEEEEeecc
Confidence 999999999999977 999999999987
No 94
>PTZ00050 3-oxoacyl-acyl carrier protein synthase; Provisional
Probab=99.01 E-value=5.6e-09 Score=98.73 Aligned_cols=116 Identities=14% Similarity=0.179 Sum_probs=80.9
Q ss_pred CHHHHHHHHHHHHHHHcCCC-cCCccE----EEEecccCCCC---------------------Cc-----chHHHHHHHH
Q 023511 52 DVISMSLTAVTNLLEKYKID-PKQIGR----LEVGSETVIDK---------------------SK-----SIKTFLMQIF 100 (281)
Q Consensus 52 ~~~~la~~Aa~~aL~~a~l~-~~dId~----li~~s~t~~~~---------------------~p-----~~a~~i~~~l 100 (281)
....|+..|+++||+++|++ +++++. +++++..+... .| ..+..|...+
T Consensus 76 ~~~~l~~~aa~~Al~dAGl~~~~~~~~~~~Gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is~~~ 155 (421)
T PTZ00050 76 RATHFAMAAAREALADAKLDILSEKDQERIGVNIGSGIGSLADLTDEMKTLYEKGHSRVSPYFIPKILGNMAAGLVAIKH 155 (421)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccccCcccEEEEEccCcccHHHHHHHHHHHHhcCcCcCCHHHHHhhhhhHHHHHHHHHh
Confidence 46899999999999999998 666543 33444322210 00 1233344444
Q ss_pred hhcCCCCceeeecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeeccc-----------------c--cC--------
Q 023511 101 EKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV-----------------Y--AE-------- 153 (281)
Q Consensus 101 ~~~g~~~~~~~di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s-----------------~--~~-------- 153 (281)
++.| +++-+..+|++++.||..|..+|++|.+ +.+||.++|... + .+
T Consensus 156 ~l~G----p~~ti~~aCaSg~~Al~~A~~~I~~G~~--d~~lvgG~e~~~~p~~~~~f~~~~~l~~~~~~~p~~~~~pfd 229 (421)
T PTZ00050 156 KLKG----PSGSAVTACATGAHCIGEAFRWIKYGEA--DIMICGGTEASITPVSFAGFSRMRALCTKYNDDPQRASRPFD 229 (421)
T ss_pred CCCC----cccccccHhHHHHHHHHHHHHHHHcCCC--CEEEECcccccCCHHHHHHHHhhhccccCcCCCCCccCCCCc
Confidence 4433 4677888999999999999999999976 999999998621 0 00
Q ss_pred -CCCccccCcceEEEEEccCC
Q 023511 154 -GPARPTGGAAAVVMLVGPDA 173 (281)
Q Consensus 154 -~~~~~~fGDGAaA~ll~~~~ 173 (281)
....+++||||+|+||++.+
T Consensus 230 ~~~~G~~~gEGAaalvLe~~~ 250 (421)
T PTZ00050 230 KDRAGFVMGEGAGILVLEELE 250 (421)
T ss_pred CCCCCEeeccceEEEEEeeHH
Confidence 11357889999999999754
No 95
>PRK08131 acetyl-CoA acetyltransferase; Provisional
Probab=98.98 E-value=3.1e-09 Score=99.70 Aligned_cols=96 Identities=17% Similarity=0.178 Sum_probs=79.3
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCC-CcchHHHHHHHHhhcCCC-CceeeecccccchHHHHHHHH
Q 023511 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDK-SKSIKTFLMQIFEKFGNT-DIEGVDSTNACYGGTAALFNC 127 (281)
Q Consensus 50 ~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~-~p~~a~~i~~~l~~~g~~-~~~~~di~~~C~g~~~aL~~A 127 (281)
+.+..+|+.+|++++|+++|++|+|||.+++++..+.-. .+..+.. .+...|.+ .++++.++++|++++.|+..|
T Consensus 23 ~~~~~eL~~~a~~~al~~agi~~~~Id~v~~G~~~~~~~~~~~~ar~---~~~~~Glp~~~p~~tV~~~CaSG~~Ai~~A 99 (401)
T PRK08131 23 SVRPDDLAATVIRRLLEKSGFPGDDIEDVILGCTNQAGEDSRNVARN---ALLLAGLPVTVPGQTVNRLCASGLAAVIDA 99 (401)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccccccccccHHHH---HHHhcCCCCCCceeeeechhhhHHHHHHHH
Confidence 567899999999999999999999999999997744322 2334432 33344444 588999999999999999999
Q ss_pred HHHHHhCCCCCCeEEEEEeeccc
Q 023511 128 VNWVESSSWDGRYGLVVCTDSAV 150 (281)
Q Consensus 128 ~~~l~~g~~~~~~aLVV~~e~~s 150 (281)
...|++|.+ +.+|+++.|.+|
T Consensus 100 ~~~I~sG~~--dvvlagG~Esms 120 (401)
T PRK08131 100 ARAITCGEG--DLYLAGGVESMS 120 (401)
T ss_pred HHHHHCCCC--CEEEEEEecCCC
Confidence 999999976 999999999987
No 96
>PRK08963 fadI 3-ketoacyl-CoA thiolase; Reviewed
Probab=98.97 E-value=2.3e-09 Score=101.41 Aligned_cols=96 Identities=18% Similarity=0.220 Sum_probs=78.7
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCC-CceeeecccccchHHHHHHHHH
Q 023511 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNT-DIEGVDSTNACYGGTAALFNCV 128 (281)
Q Consensus 50 ~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~-~~~~~di~~~C~g~~~aL~~A~ 128 (281)
+.+..+|+.+|++.+|+++|++|++||.+|+++..+....+.++-.+...++ .+ .++++.++++|++++.|+..|.
T Consensus 26 ~~~~~eL~~~a~~~al~~agl~~~~ID~vi~G~~~~~~~~~~~ar~~a~~aG---l~~~~P~~tV~~aCaSG~~Ai~~Aa 102 (428)
T PRK08963 26 GIPAVDLGKMVVGELLARSEIDPELIEQLVFGQVVQMPEAPNIAREIVLGTG---MNVHTDAYSVSRACATSFQAVANVA 102 (428)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEeccCCCCCccHHHHHHHHHCC---CCCCCcceeehhhhHHHHHHHHHHH
Confidence 5678999999999999999999999999999976443222334333334444 44 5789999999999999999999
Q ss_pred HHHHhCCCCCCeEEEEEeeccc
Q 023511 129 NWVESSSWDGRYGLVVCTDSAV 150 (281)
Q Consensus 129 ~~l~~g~~~~~~aLVV~~e~~s 150 (281)
.+|++|.+ +.+|+++.|.+|
T Consensus 103 ~~I~sG~~--dvvLvgG~Esms 122 (428)
T PRK08963 103 ESIMAGTI--DIGIAGGADSSS 122 (428)
T ss_pred HHHHCCCC--CEEEEecccccC
Confidence 99999976 999999999887
No 97
>PRK07850 acetyl-CoA acetyltransferase; Provisional
Probab=98.96 E-value=3.7e-09 Score=98.81 Aligned_cols=97 Identities=11% Similarity=0.109 Sum_probs=77.4
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcc-hHHHHHHHHhhcCCC-CceeeecccccchHHHHHHHH
Q 023511 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKS-IKTFLMQIFEKFGNT-DIEGVDSTNACYGGTAALFNC 127 (281)
Q Consensus 50 ~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~-~a~~i~~~l~~~g~~-~~~~~di~~~C~g~~~aL~~A 127 (281)
+.++.+|+.+|++++|+++|++|++||.+++++......... .+-.+...+ |.+ +++++.++++|++++.|+..|
T Consensus 23 ~~~~~eL~~~a~~~aL~~agi~~~~Id~v~~G~~~~~~~q~~~~ar~~~l~~---Gl~~~~p~~tV~~~CaSG~~A~~~A 99 (387)
T PRK07850 23 GLHAAELLGAVQRAVLDRAGIDPGDVEQVIGGCVTQAGEQSNNITRTAWLHA---GLPYHVGATTIDCQCGSAQQANHLV 99 (387)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccccccccchHHHHHHHhC---CCCCCCceEEEecccccHHHHHHHH
Confidence 446899999999999999999999999999987542221111 222222323 444 588999999999999999999
Q ss_pred HHHHHhCCCCCCeEEEEEeecccc
Q 023511 128 VNWVESSSWDGRYGLVVCTDSAVY 151 (281)
Q Consensus 128 ~~~l~~g~~~~~~aLVV~~e~~s~ 151 (281)
...|++|.+ +.+|+++.|++|.
T Consensus 100 ~~~I~sG~~--dvvla~G~E~mS~ 121 (387)
T PRK07850 100 AGLIAAGAI--DVGIACGVEAMSR 121 (387)
T ss_pred HHHHHCCCC--CEEEEEeEecCCC
Confidence 999999976 9999999999983
No 98
>PRK06365 acetyl-CoA acetyltransferase; Provisional
Probab=98.96 E-value=5.2e-09 Score=99.07 Aligned_cols=109 Identities=8% Similarity=-0.064 Sum_probs=79.8
Q ss_pred eecCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchH-HHHHHHHhhcCCCCceeeeccc
Q 023511 37 IGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIK-TFLMQIFEKFGNTDIEGVDSTN 115 (281)
Q Consensus 37 ~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a-~~i~~~l~~~g~~~~~~~di~~ 115 (281)
.|++...+.....+.+..+|+.+|+++||+++|++++|||.+++++.+.....+..+ ..+...++ .+..+++.+.+
T Consensus 21 vG~g~Tpfgr~~~~~~~~eL~~eA~~~Al~dagl~~~dID~vv~~~~~~~~~g~~~~~~~~~~~lG---l~~~~~~~v~~ 97 (430)
T PRK06365 21 VAAGVTKFDKASPYMDFRERVKKAFDYAMNDAGLTLADIDGSVASYFSDHFQRQLLAGIMVQDYLG---LVPKPSKRIEG 97 (430)
T ss_pred EEeeecCccccCCCCCHHHHHHHHHHHHHHHcCCCHHHcCEEEEecccccccccchhhHHHHHhcC---CCCCceEEEeC
Confidence 466655432222345678999999999999999999999998876543222112222 22334444 45577888999
Q ss_pred ccchHHHHHHHHHHHHHhCCCCCCeEEEEEeeccc
Q 023511 116 ACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV 150 (281)
Q Consensus 116 ~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s 150 (281)
+|+++..++..|...|++|.+ +.|||++.|+++
T Consensus 98 ~~aSg~~ai~~A~~~I~sG~~--~~vLv~G~e~~s 130 (430)
T PRK06365 98 GGATGGLAFQAGYEEIASGRM--DCVAVYGFETMS 130 (430)
T ss_pred CcHHHHHHHHHHHHHHHcCCC--CEEEEEEeeecc
Confidence 999999999999999999976 999999999643
No 99
>PRK06633 acetyl-CoA acetyltransferase; Provisional
Probab=98.95 E-value=2.6e-09 Score=99.87 Aligned_cols=97 Identities=11% Similarity=0.167 Sum_probs=79.7
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCC-CceeeecccccchHHHHHHHHH
Q 023511 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNT-DIEGVDSTNACYGGTAALFNCV 128 (281)
Q Consensus 50 ~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~-~~~~~di~~~C~g~~~aL~~A~ 128 (281)
+.++.+|+.+|++.+|+++|++|++||.+++++..+....+..+..+.. ..|.+ +++++.++++|++++.|+..|.
T Consensus 24 ~~~~~~L~~~a~~~al~~agi~~~~Id~vv~G~~~~~~~g~~~~r~~~~---~~Gl~~~~p~~~V~~~CaSG~~Ai~~A~ 100 (392)
T PRK06633 24 TTPAPMLAAHLIKDILQNSKIDPALVNEVILGQVITGGSGQNPARQTLI---HAGIPKEVPGYTINKVCGSGLKSVALAA 100 (392)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHcCEEEEEecCccccccHHHHHHHH---HCCCCCCccchhhcchhHHHHHHHHHHH
Confidence 4579999999999999999999999999999876543322334433333 34445 5889999999999999999999
Q ss_pred HHHHhCCCCCCeEEEEEeecccc
Q 023511 129 NWVESSSWDGRYGLVVCTDSAVY 151 (281)
Q Consensus 129 ~~l~~g~~~~~~aLVV~~e~~s~ 151 (281)
.+|++|.+ +.+|+++.|++|.
T Consensus 101 ~~I~sG~~--dvvla~G~E~ms~ 121 (392)
T PRK06633 101 NSIMTGDN--EIVIAGGQENMSL 121 (392)
T ss_pred HHHHcCCC--CEEEEcccccCCC
Confidence 99999976 9999999999883
No 100
>TIGR02446 FadI fatty oxidation complex, beta subunit FadI. This subunit of the FadJI complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit, and YfcY. This protein is almost always located adjacent to FadJ (TIGR02440). The FadJI complex is needed for anaerobic beta-oxidation of short-chain fatty acids in E. coli.
Probab=98.95 E-value=3.3e-09 Score=100.36 Aligned_cols=95 Identities=19% Similarity=0.246 Sum_probs=78.4
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhh-cCCC-CceeeecccccchHHHHHHHH
Q 023511 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEK-FGNT-DIEGVDSTNACYGGTAALFNC 127 (281)
Q Consensus 50 ~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~-~g~~-~~~~~di~~~C~g~~~aL~~A 127 (281)
+.+..+|+.+|++++|++++++|++||.+|+++..+....+ .+.+.+.+ .|.+ .++++.++++|++++.|+..|
T Consensus 28 ~~~~~~L~~~a~~~al~~agl~~~~Id~vi~G~~~~~~~~~----~~ar~~~l~aGl~~~~p~~~V~~~CaSG~~A~~~a 103 (430)
T TIGR02446 28 GIPAVDLGKMVVSELLARSEIDPKLIEQLVFGQVVQMPEAP----NIAREIVLGTGMNVHTDAYSVTRACATSFQSAVNV 103 (430)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccCcCccc----hHHHHHHHhCCCCCCCchhhhhhhhhHHHHHHHHH
Confidence 45789999999999999999999999999998765432112 23344322 3444 688999999999999999999
Q ss_pred HHHHHhCCCCCCeEEEEEeeccc
Q 023511 128 VNWVESSSWDGRYGLVVCTDSAV 150 (281)
Q Consensus 128 ~~~l~~g~~~~~~aLVV~~e~~s 150 (281)
..+|++|.+ +.+|+++.|++|
T Consensus 104 ~~~I~sG~~--dvvla~G~E~mS 124 (430)
T TIGR02446 104 AESIMAGAI--DIGIAGGADSSS 124 (430)
T ss_pred HHHHHCCCC--CEEEEeeeEccc
Confidence 999999976 999999999997
No 101
>PRK14691 3-oxoacyl-(acyl carrier protein) synthase II; Provisional
Probab=98.94 E-value=2e-08 Score=92.26 Aligned_cols=177 Identities=9% Similarity=-0.014 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHHHcCC--CcCCccEEEEecccCC----------------CCCc---------chHHHHHHHHhhcCC
Q 023511 53 VISMSLTAVTNLLEKYKI--DPKQIGRLEVGSETVI----------------DKSK---------SIKTFLMQIFEKFGN 105 (281)
Q Consensus 53 ~~~la~~Aa~~aL~~a~l--~~~dId~li~~s~t~~----------------~~~p---------~~a~~i~~~l~~~g~ 105 (281)
...++..|++++++++|+ ++++++.++-++..+. ...| ..+..|...+++.|
T Consensus 4 ~~~~~~~a~~~a~~~a~~~~~~~r~Gv~~G~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~n~~a~~is~~~~l~G- 82 (342)
T PRK14691 4 WWRYKWITFHPSLTHADNTEKQERTATIIGAGIGGFPAIAHAVRTSDSRGPKRLSPFTVPSFLVNLAAGHVSIKHHFKG- 82 (342)
T ss_pred HHHHHHHHHHHHHHhCCCCCCcccEEEEEecCcccHHHHHHHHHHHHhcCccccChhHHhhhhhhHHHHHHHHHhCCCC-
Confidence 467899999999999996 6778877764432211 0011 24455555555544
Q ss_pred CCceeeecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeeccc-------c----------c--C---------CCCc
Q 023511 106 TDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV-------Y----------A--E---------GPAR 157 (281)
Q Consensus 106 ~~~~~~di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s-------~----------~--~---------~~~~ 157 (281)
+++-+..+|++++.||..|..+|+.|.. +.+||.++|... + . + +...
T Consensus 83 ---p~~ti~~aCaSg~~Al~~A~~~I~~G~~--d~~ivgg~d~~~~~~~~~~f~~~~~ls~~~~~~p~~~~rPFd~~r~G 157 (342)
T PRK14691 83 ---PIGAPVTACAAGVQAIGDAVRMIRNNEA--DVALCGGAEAVIDTVSLAGFAAARALSTHFNSTPEKASRPFDTARDG 157 (342)
T ss_pred ---CccccccHhHHHHHHHHHHHHHHHcCCC--CEEEEecccccCCHHHHHHHHHhhhhhcCCCCCCCcCCCCCCCCCCC
Confidence 3677889999999999999999999976 889998888631 0 0 0 1246
Q ss_pred cccCcceEEEEEccCCC---c--cccccccccccCCcccccccCCCCcccCCCCcccHHHHHHHHHHHHHHHHHHHHHhh
Q 023511 158 PTGGAAAVVMLVGPDAP---V--AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLE 232 (281)
Q Consensus 158 ~~fGDGAaA~ll~~~~~---~--~i~~~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 232 (281)
+++||||+++||+..+. . .+.....+ ++......... .+. .. ......+++ ++|+
T Consensus 158 ~v~gEGAa~lvLes~~~A~~rG~~i~a~I~g-~~~~~d~~~~~-----~p~----p~----~~~~~~ai~------~AL~ 217 (342)
T PRK14691 158 FVMGEGAGLLIIEELEHALARGAKPLAEIVG-YGTSADAYHMT-----SGA----ED----GDGAYRAMK------IALR 217 (342)
T ss_pred ccccceEEEEEEeeHHHHHhCCCCceEEEEE-EEEEcCCCCCC-----CCC----CC----HHHHHHHHH------HHHH
Confidence 78999999999997532 1 12111111 11100000000 000 00 111122222 3467
Q ss_pred cCCCCCCCCcEEecCCCChhHHH
Q 023511 233 GKQFSLSNADYFVFHSPYNKLVQ 255 (281)
Q Consensus 233 ~~g~~~~did~~i~Hq~n~~i~~ 255 (281)
++|++++||||+-.|-.+.+..+
T Consensus 218 ~Agl~p~dIdyIeaHgtgT~~~D 240 (342)
T PRK14691 218 QAGITPEQVQHLNAHATSTPVGD 240 (342)
T ss_pred HcCCCHHHCCEEEecCCCCcCCC
Confidence 79999999999999987666543
No 102
>PRK06366 acetyl-CoA acetyltransferase; Provisional
Probab=98.94 E-value=6.5e-09 Score=97.24 Aligned_cols=95 Identities=8% Similarity=0.054 Sum_probs=76.0
Q ss_pred CCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCC-CceeeecccccchHHHHHHHHHH
Q 023511 51 EDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNT-DIEGVDSTNACYGGTAALFNCVN 129 (281)
Q Consensus 51 e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~-~~~~~di~~~C~g~~~aL~~A~~ 129 (281)
.+..+|+.+|++++|+++|++|+|||.+|+++..+....+..+..+...++ .+ +++++.++++|++++.++..|..
T Consensus 24 ~~~~~L~~~a~~~al~dagi~~~dID~vi~g~~~~~~~~~~~a~~~~~~~G---l~~~~p~~~v~~~caSg~~av~~Aa~ 100 (388)
T PRK06366 24 IKAPQLGGAAIKAVIDDAKLDPALVQEVIMGNVIQAGVGQNPAGQAAYHAG---LPFGVTKYTVNVVCASGMLAVESAAR 100 (388)
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecCCCCccCcHHHHHHHHCC---CCCCCcceeeechhhHHHHHHHHHHH
Confidence 578999999999999999999999999998865332211223443444444 44 47788888999999999999999
Q ss_pred HHHhCCCCCCeEEEEEeeccc
Q 023511 130 WVESSSWDGRYGLVVCTDSAV 150 (281)
Q Consensus 130 ~l~~g~~~~~~aLVV~~e~~s 150 (281)
+|++|.+ +.+|+++.|.++
T Consensus 101 ~I~sG~~--d~vla~G~e~ms 119 (388)
T PRK06366 101 EIMLGER--DLVIAGGMENMS 119 (388)
T ss_pred HHhcCCC--CEEEEEeeEccc
Confidence 9999976 999988889876
No 103
>PLN02644 acetyl-CoA C-acetyltransferase
Probab=98.92 E-value=6.8e-09 Score=97.30 Aligned_cols=97 Identities=10% Similarity=0.032 Sum_probs=76.1
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHH
Q 023511 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVN 129 (281)
Q Consensus 50 ~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~ 129 (281)
+.+..+|+.+|++++|+++|++++|||.+|+++.......+..+..+...+++. .+.+++.++.+|++++.++..|..
T Consensus 22 ~~~~~~L~~~a~~~al~dAgl~~~~ID~vv~g~~~~~~~~~~~~~~~~~~~Gl~--~~~p~~~v~~~caSg~~av~~Aa~ 99 (394)
T PLN02644 22 SLSATELGSIAIQAALERAGVDPALVQEVFFGNVLSANLGQAPARQAALGAGLP--PSTICTTVNKVCASGMKAVMLAAQ 99 (394)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecCcCCcCCcHHHHHHHhcCCC--CCCceEEEeccchHHHHHHHHHHH
Confidence 467899999999999999999999999999876432221223333333444431 246788899999999999999999
Q ss_pred HHHhCCCCCCeEEEEEeeccc
Q 023511 130 WVESSSWDGRYGLVVCTDSAV 150 (281)
Q Consensus 130 ~l~~g~~~~~~aLVV~~e~~s 150 (281)
+|++|.+ +.+||++.|.++
T Consensus 100 ~I~sG~~--d~vlv~G~E~~s 118 (394)
T PLN02644 100 SIQLGIN--DVVVAGGMESMS 118 (394)
T ss_pred HHHcCCC--CEEEEEeEEecC
Confidence 9999977 999999999876
No 104
>PRK09050 beta-ketoadipyl CoA thiolase; Validated
Probab=98.91 E-value=5.9e-09 Score=97.82 Aligned_cols=97 Identities=8% Similarity=0.104 Sum_probs=79.5
Q ss_pred CCCHHHHHHHHHHHHHHH-cCCCcCCccEEEEecccCCCC-CcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHH
Q 023511 50 VEDVISMSLTAVTNLLEK-YKIDPKQIGRLEVGSETVIDK-SKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNC 127 (281)
Q Consensus 50 ~e~~~~la~~Aa~~aL~~-a~l~~~dId~li~~s~t~~~~-~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A 127 (281)
+.++.+|+.+|++.+|++ +|++|++||.+++++..+... .+..+-.+...+++. .+++++-++++|++++.|+..|
T Consensus 23 ~~~~~~L~~~a~~~al~~~agi~~~~Id~v~~G~~~~~~~~~~~~ar~~~~~~Gl~--~~vP~~tV~~aCaSG~~Ai~~A 100 (401)
T PRK09050 23 SVRADDLGAVPLKALMARNPGVDWEAVDDVIYGCANQAGEDNRNVARMSALLAGLP--VSVPGTTINRLCGSGMDAVGTA 100 (401)
T ss_pred CCCHHHHHHHHHHHHHHhccCCCHHHCCEEEEEeccccccccchHHHHHHHHcCCC--CCCceEEEecccccHHHHHHHH
Confidence 557899999999999995 799999999999997653221 234444444555542 2488999999999999999999
Q ss_pred HHHHHhCCCCCCeEEEEEeeccc
Q 023511 128 VNWVESSSWDGRYGLVVCTDSAV 150 (281)
Q Consensus 128 ~~~l~~g~~~~~~aLVV~~e~~s 150 (281)
...|++|.+ +.+|+++.|.+|
T Consensus 101 ~~~I~sG~~--dvvlagGvEsmS 121 (401)
T PRK09050 101 ARAIKAGEA--ELMIAGGVESMS 121 (401)
T ss_pred HHHHHCCCC--CEEEEecccccc
Confidence 999999976 999999999998
No 105
>PRK13359 beta-ketoadipyl CoA thiolase; Provisional
Probab=98.90 E-value=7.5e-09 Score=97.05 Aligned_cols=97 Identities=11% Similarity=0.111 Sum_probs=80.4
Q ss_pred CCHHHHHHHHHHHHHHH-cCCCcCCccEEEEecccCCCC-CcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHH
Q 023511 51 EDVISMSLTAVTNLLEK-YKIDPKQIGRLEVGSETVIDK-SKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCV 128 (281)
Q Consensus 51 e~~~~la~~Aa~~aL~~-a~l~~~dId~li~~s~t~~~~-~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~ 128 (281)
.++.+|+..|++.+|++ +|++|++||.+|+++..+... .+..+-.+...+++. .+++++-|+++|++++.|+..|.
T Consensus 24 ~~~~~L~~~a~~~al~r~a~i~~~~Id~vi~G~~~~~~~~g~~~ar~~~l~~Gl~--~~vp~~tV~~~CaSG~~Av~~A~ 101 (400)
T PRK13359 24 VRADDLGAVPLKALVERNPDVDWAAIDDVIYGCANQAGEDNRNVARMSLLLAGLP--HGVPGSTINRLCGSGMDAVGVAA 101 (400)
T ss_pred CCHHHHHHHHHHHHHHhccCCCHHHCCEEEEEeccccccccccHHHHHHHHcCCC--CCCceEEEeccchhHHHHHHHHH
Confidence 46799999999999996 599999999999987654322 255666555555543 24899999999999999999999
Q ss_pred HHHHhCCCCCCeEEEEEeecccc
Q 023511 129 NWVESSSWDGRYGLVVCTDSAVY 151 (281)
Q Consensus 129 ~~l~~g~~~~~~aLVV~~e~~s~ 151 (281)
++|++|.+ +.+|+++.|.+|.
T Consensus 102 ~~I~sG~~--divlagGvEsmS~ 122 (400)
T PRK13359 102 RAIKSGEA--ALMIAGGVESMSR 122 (400)
T ss_pred HHHHcCCC--CEEEEeeeeccCC
Confidence 99999976 9999999999983
No 106
>PRK06504 acetyl-CoA acetyltransferase; Provisional
Probab=98.88 E-value=1e-08 Score=95.87 Aligned_cols=97 Identities=12% Similarity=0.162 Sum_probs=76.6
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCC-CcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHH
Q 023511 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDK-SKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCV 128 (281)
Q Consensus 50 ~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~-~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~ 128 (281)
+.+..+|+.+|++.+|++++++|+|||.+|+++..+... .+..+..+.-..+ ++ .+++++-++.+|++++.|+..|.
T Consensus 23 ~~~~~~L~~~a~~~al~~a~l~~~~Id~vi~G~~~~~~~~~~~~ar~~~l~~g-l~-~~vP~~tV~~~CaSG~~Ai~~A~ 100 (390)
T PRK06504 23 GWHPADLAAQVLDALVDRSGADPALIEDVIMGCVSQVGEQATNVARNAVLASK-LP-ESVPGTSIDRQCGSSQQALHFAA 100 (390)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccccccccccHHHHHHHHcC-CC-CCCceEEEechhhHHHHHHHHHH
Confidence 456899999999999999999999999999987653211 1222221111122 22 36889999999999999999999
Q ss_pred HHHHhCCCCCCeEEEEEeeccc
Q 023511 129 NWVESSSWDGRYGLVVCTDSAV 150 (281)
Q Consensus 129 ~~l~~g~~~~~~aLVV~~e~~s 150 (281)
.+|++|.+ +.+|+++.|++|
T Consensus 101 ~~I~sG~~--dvvLagGvEsmS 120 (390)
T PRK06504 101 QAVMSGTM--DIVIAAGVESMT 120 (390)
T ss_pred HHHHCCCC--CEEEEeeeeecC
Confidence 99999976 999999999987
No 107
>TIGR02430 pcaF beta-ketoadipyl CoA thiolase. Members of this family are designated beta-ketoadipyl CoA thiolase, an enzyme that acts at the end of pathways for the degradation of protocatechuate (from benzoate and related compounds) and of phenylacetic acid.
Probab=98.87 E-value=9.7e-09 Score=96.29 Aligned_cols=97 Identities=10% Similarity=0.113 Sum_probs=79.4
Q ss_pred CCCHHHHHHHHHHHHHHH-cCCCcCCccEEEEecccCCCC-CcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHH
Q 023511 50 VEDVISMSLTAVTNLLEK-YKIDPKQIGRLEVGSETVIDK-SKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNC 127 (281)
Q Consensus 50 ~e~~~~la~~Aa~~aL~~-a~l~~~dId~li~~s~t~~~~-~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A 127 (281)
+.++.+|+.+|++.+|++ ++++|++||.+++++..+... .+..+-.+...+++. .+++++.|+++|++++.|+..|
T Consensus 22 ~~~~~~L~~~a~~~al~~~a~i~~~~Id~v~~G~~~~~~~~~~~~ar~~~~~~Gl~--~~~p~~~V~~~CaSG~~Ai~~a 99 (400)
T TIGR02430 22 SVRADDLAAVPIKALLARNPQLDWAAIDDVIYGCANQAGEDNRNVARMAALLAGLP--VSVPGTTVNRLCGSGLDAIGMA 99 (400)
T ss_pred CCCHHHHHHHHHHHHHHhccCCCHHHCCEEEEEeccccccccccHHHHHHHHcCCC--CCCceEEeechhhhHHHHHHHH
Confidence 456799999999999995 799999999999987653221 244555455555542 1588999999999999999999
Q ss_pred HHHHHhCCCCCCeEEEEEeeccc
Q 023511 128 VNWVESSSWDGRYGLVVCTDSAV 150 (281)
Q Consensus 128 ~~~l~~g~~~~~~aLVV~~e~~s 150 (281)
...|++|.+ +.+|+++.|++|
T Consensus 100 ~~~I~sG~~--d~~la~G~E~ms 120 (400)
T TIGR02430 100 ARAIKAGEA--DLLIAGGVESMS 120 (400)
T ss_pred HHHHHCCCC--CEEEEecccccc
Confidence 999999976 999999999998
No 108
>PRK06519 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=98.84 E-value=7.2e-08 Score=90.39 Aligned_cols=216 Identities=12% Similarity=0.035 Sum_probs=128.8
Q ss_pred ceeEEeEEEEEcCCcccchhHHHhhh--CCCC-----ce---eeee-cCc---eeeeeCCC-----CCCHHHHHHHHHHH
Q 023511 3 KNVGILAMDIYFPPTCVQQEALEAHD--GASK-----GK---YTIG-LGQ---ECMAFCSE-----VEDVISMSLTAVTN 63 (281)
Q Consensus 3 ~~v~I~~ig~~lP~~~v~~~~~~~~~--~~~~-----~~---~~~g-i~~---r~~~~~~~-----~e~~~~la~~Aa~~ 63 (281)
++|.|.|+|...|-- .+.+++.+.+ |.+. .. +... ++. +.+ +... -.....|+..|+++
T Consensus 6 ~rVvITGiG~vsp~G-~~~e~~w~aL~~G~sg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~r~~~~a~~Aa~~ 83 (398)
T PRK06519 6 NDVVITGIGLVSSLG-EGLDAHWNALSAGRPQPNVDTETFAPYPVHPLPEIDWSQQ-IPKRGDQRQMETWQRLGTYAAGL 83 (398)
T ss_pred CCEEEEcceEECCCC-CCHHHHHHHHHcCCCCCCCCcccccCcCcccccccChhhc-CCchhhhhccCHHHHHHHHHHHH
Confidence 579999999999987 4677766653 2221 00 0000 010 000 1110 12356799999999
Q ss_pred HHHHcCCCc-----CCccEEEEecccCCC----------------------------CCc---------chHHHHHHHHh
Q 023511 64 LLEKYKIDP-----KQIGRLEVGSETVID----------------------------KSK---------SIKTFLMQIFE 101 (281)
Q Consensus 64 aL~~a~l~~-----~dId~li~~s~t~~~----------------------------~~p---------~~a~~i~~~l~ 101 (281)
||+++|+++ +++++++-++..+.. ..| ..+..|...++
T Consensus 84 Al~dAGl~~~~~~~~r~GvivGt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~n~~a~~is~~~g 163 (398)
T PRK06519 84 ALDDAGIKGNEELLSTMDMIVAAGGGERDIAVDTAILNEARKRNDRGVLLNERLMTELRPTLFLAQLSNLLAGNISIVHK 163 (398)
T ss_pred HHHHcCCCCCCCCccceEEEEEeCCCchhHHHhhhhhhcccchhHHHHHHHhcCCCccChhhhhhhhhhHHHHHHHHHhC
Confidence 999999854 345555544322210 011 13444555555
Q ss_pred hcCCCCceeeecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeecc-c------c------c--------CC----CC
Q 023511 102 KFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSA-V------Y------A--------EG----PA 156 (281)
Q Consensus 102 ~~g~~~~~~~di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~-s------~------~--------~~----~~ 156 (281)
..| +++-+..+|++++.||..|..+|+.|+. +.+||.++|.. + + . ++ ..
T Consensus 164 l~G----p~~ti~~acaSg~~Ai~~A~~~I~~G~~--d~~lvGG~d~~~~~~~~~~~~~~~~ls~~~~~p~~d~~~~~r~ 237 (398)
T PRK06519 164 VTG----SSRTFMGEESAGVSAIEIAFARIASGQS--DHALVGGAYNAERPDMLLLYELGGLLLKGGWAPVWSRGGEDGG 237 (398)
T ss_pred CCC----ccccccCCccHHHHHHHHHHHHHHcCCC--CEEEEeeeccccCHHHHHHHHHcCccCCCCCCchhccCccCCC
Confidence 544 4688899999999999999999999976 99999999862 1 0 0 11 24
Q ss_pred ccccCcceEEEEEccCCC----c-cccccccccccCCcccccccCCCCcccCCCCcccHHHHHHHHHHHHHHHHHHHHHh
Q 023511 157 RPTGGAAAVVMLVGPDAP----V-AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKL 231 (281)
Q Consensus 157 ~~~fGDGAaA~ll~~~~~----~-~i~~~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 231 (281)
.++.|+||+++||++.+. . .+.....+. +. +.. + . ... .+..+++ .+|
T Consensus 238 G~v~GEGAa~lvLE~~~~A~~Rga~i~AeI~G~-~~---d~~-~-------~-----~~~----~~~~am~------~AL 290 (398)
T PRK06519 238 GFILGSGGAFLVLESREHAEARGARPYARISGV-ES---DRA-R-------R-----APG----DLEASLE------RLL 290 (398)
T ss_pred CeeeeceEEEEEEeeHHHHHhCCCceEEEEEEE-ee---cCC-C-------C-----ChH----HHHHHHH------HHH
Confidence 678899999999997542 1 232222222 11 000 0 0 011 1222222 357
Q ss_pred hcCCCCCCCCcEEecCCCChhHH
Q 023511 232 EGKQFSLSNADYFVFHSPYNKLV 254 (281)
Q Consensus 232 ~~~g~~~~did~~i~Hq~n~~i~ 254 (281)
+.+|+ ++||||+..|-.+.+..
T Consensus 291 ~~Agl-~~~IdyI~ahgtgT~~~ 312 (398)
T PRK06519 291 KPAGG-LAAPTAVISGATGAHPA 312 (398)
T ss_pred HHCCC-cccCCEEEeCCCCCCCc
Confidence 78999 79999999997665543
No 109
>PRK08947 fadA 3-ketoacyl-CoA thiolase; Reviewed
Probab=98.81 E-value=1.7e-08 Score=94.29 Aligned_cols=96 Identities=14% Similarity=0.095 Sum_probs=77.3
Q ss_pred CCCHHHHHHHHHHHHHHH-cCCCcCCccEEEEecccCCCC-CcchHHHHHHHHhhcCCC-CceeeecccccchHHHHHHH
Q 023511 50 VEDVISMSLTAVTNLLEK-YKIDPKQIGRLEVGSETVIDK-SKSIKTFLMQIFEKFGNT-DIEGVDSTNACYGGTAALFN 126 (281)
Q Consensus 50 ~e~~~~la~~Aa~~aL~~-a~l~~~dId~li~~s~t~~~~-~p~~a~~i~~~l~~~g~~-~~~~~di~~~C~g~~~aL~~ 126 (281)
+....+|+..+++.+|++ +|++|++||.+|+++..+... .+..+..+...++ .+ .++++.++++|++++.|+..
T Consensus 24 ~~~~~~L~~~~~~~al~~~agl~~~~Id~vi~g~~~~~~~~g~~~ar~~~~~~G---l~~~~p~~~V~~~caSG~~Ai~~ 100 (387)
T PRK08947 24 NVRAEDLSAHLMRSLLARNPALDPAEIDDIIWGCVQQTLEQGFNIARNAALLAG---IPHSVPAVTVNRLCGSSMQALHD 100 (387)
T ss_pred CCCHHHHHHHHHHHHHHhccCcChHHhCeEEEEeccccccccccHHHHHHHHcC---CCCCCcceeeechhHHHHHHHHH
Confidence 556899999999999996 799999999999987643221 1333433334444 44 48889999999999999999
Q ss_pred HHHHHHhCCCCCCeEEEEEeeccc
Q 023511 127 CVNWVESSSWDGRYGLVVCTDSAV 150 (281)
Q Consensus 127 A~~~l~~g~~~~~~aLVV~~e~~s 150 (281)
|..+|++|.+ +.+|+++.|.+|
T Consensus 101 A~~~I~sG~~--d~vlv~G~E~ms 122 (387)
T PRK08947 101 AARAIMTGDG--DVFLIGGVEHMG 122 (387)
T ss_pred HHHHHHCCCC--CEEEEccccccc
Confidence 9999999977 999999999887
No 110
>PRK07910 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=98.80 E-value=6.1e-08 Score=91.56 Aligned_cols=223 Identities=11% Similarity=0.100 Sum_probs=126.8
Q ss_pred ceeEEeEEEEEcCCcccchhHHHhhh--CCC-----Cce------eeeecC---ceee--eeCC----CCCCHHHHHHHH
Q 023511 3 KNVGILAMDIYFPPTCVQQEALEAHD--GAS-----KGK------YTIGLG---QECM--AFCS----EVEDVISMSLTA 60 (281)
Q Consensus 3 ~~v~I~~ig~~lP~~~v~~~~~~~~~--~~~-----~~~------~~~gi~---~r~~--~~~~----~~e~~~~la~~A 60 (281)
++|.|+|+|...|-- .+.+++.+.+ |.+ +++ +...++ ...+ .+.. .-.....|+..|
T Consensus 12 ~~VvItGig~~sp~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~g~i~~~~d~~~~~~~~~~~d~~~~~~l~a 90 (418)
T PRK07910 12 PNVVVTGIAMTTALA-TDAETTWKLLLDGQSGIRTLDDPFVEEFDLPVRIGGHLLEEFDHQLTRVELRRMSYLQRMSTVL 90 (418)
T ss_pred CCEEEEeeEEECCCC-CCHHHHHHHHHcCCCeeEeCChhhhhccCCCcceEEEeccCccccCCHHHHhhccHHHHHHHHH
Confidence 579999999999986 4777776653 210 111 000000 0000 0000 001245588999
Q ss_pred HHHHHHHcCC---CcCCccEEEEecccCCC-------------------------CCc-chHHHHHHHHhhcCCCCceee
Q 023511 61 VTNLLEKYKI---DPKQIGRLEVGSETVID-------------------------KSK-SIKTFLMQIFEKFGNTDIEGV 111 (281)
Q Consensus 61 a~~aL~~a~l---~~~dId~li~~s~t~~~-------------------------~~p-~~a~~i~~~l~~~g~~~~~~~ 111 (281)
+++||+++|+ ++++++.++ ++..+.. ..| ..+.++...++..| +++
T Consensus 91 a~~AledAg~~~~~~~r~Gv~~-G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is~~~~~~G----~~~ 165 (418)
T PRK07910 91 GRRVWENAGSPEVDTNRLMVSI-GTGLGSAEELVFAYDDMRARGLRAVSPLAVQMYMPNGPAAAVGLERHAKA----GVI 165 (418)
T ss_pred HHHHHHHcCCCCCCcccEEEEE-EEccCccHhHHHHHHHHHhcCcccCChhHHHHhccccHHHHHHHHhCCCC----Ccc
Confidence 9999999996 556666655 3332211 011 12333444444333 356
Q ss_pred ecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeeccc-------c-------c-----C---------CCCccccCcc
Q 023511 112 DSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV-------Y-------A-----E---------GPARPTGGAA 163 (281)
Q Consensus 112 di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s-------~-------~-----~---------~~~~~~fGDG 163 (281)
-+..+|++++.||..|..+|+.|.+ +.+||.++|... + . + +...+++|+|
T Consensus 166 ti~taCaS~~~Al~~A~~~I~~G~~--d~aivgg~~~~~~~~~~~~f~~~~~~ls~~~~~~~~~~rPFd~~~~G~v~gEG 243 (418)
T PRK07910 166 TPVSACASGSEAIAQAWRQIVLGEA--DIAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACRPFDKDRDGFVFGEG 243 (418)
T ss_pred cccchhHHHHHHHHHHHHHHHcCCC--CEEEEccccccCCHHHHHHHHhcCCccccCCCCCCCCcCCCcCCCCCEeeece
Confidence 7789999999999999999999976 999999998631 1 0 0 1246789999
Q ss_pred eEEEEEccCCC---c--cccccccccccC-CcccccccCCCCcccCCCCcccHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 023511 164 AVVMLVGPDAP---V--AFESKLRGSHMS-HAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFS 237 (281)
Q Consensus 164 AaA~ll~~~~~---~--~i~~~~~~s~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 237 (281)
++++||++... . .+.....+.... +......| +. ... ....+++ ++|+++|++
T Consensus 244 aa~vvLe~~~~A~~rg~~i~a~i~g~~~~~dg~~~~~~---------~~--~~~----~~~~a~~------~Al~~agi~ 302 (418)
T PRK07910 244 GALMVIETEEHAKARGANILARIMGASITSDGFHMVAP---------DP--NGE----RAGHAMT------RAIELAGLT 302 (418)
T ss_pred EEEEEEeeHHHHHhCCCcEEEEEEEEEEecCCCCCCCC---------CC--CHH----HHHHHHH------HHHHHhCCC
Confidence 99999997531 1 122111111110 00011111 00 011 1112222 346779999
Q ss_pred CCCCcEEecCCCChhHH
Q 023511 238 LSNADYFVFHSPYNKLV 254 (281)
Q Consensus 238 ~~did~~i~Hq~n~~i~ 254 (281)
++||||+-.|-.+.+..
T Consensus 303 ~~did~ie~hgtgt~~~ 319 (418)
T PRK07910 303 PGDIDHVNAHATGTSVG 319 (418)
T ss_pred HHHCCEEEcCCcCCCCC
Confidence 99999999998766543
No 111
>TIGR02445 fadA fatty oxidation complex, beta subunit FadA. This subunit of the FadBA complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit. This protein is almost always located adjacent to FadB (TIGR02437). The FadBA complex is the major complex active for beta-oxidation of fatty acids in E. coli.
Probab=98.79 E-value=1.8e-08 Score=94.07 Aligned_cols=95 Identities=15% Similarity=0.105 Sum_probs=75.4
Q ss_pred CCCHHHHHHHHHHHHHHH-cCCCcCCccEEEEecccCCCC-CcchHHHHHHHHh-hcCCC-CceeeecccccchHHHHHH
Q 023511 50 VEDVISMSLTAVTNLLEK-YKIDPKQIGRLEVGSETVIDK-SKSIKTFLMQIFE-KFGNT-DIEGVDSTNACYGGTAALF 125 (281)
Q Consensus 50 ~e~~~~la~~Aa~~aL~~-a~l~~~dId~li~~s~t~~~~-~p~~a~~i~~~l~-~~g~~-~~~~~di~~~C~g~~~aL~ 125 (281)
+.++.+|+.+|++.+|++ +|++|++||.+++++...... .+..+ +.+. ..|.+ .++++.++++|++++.|+.
T Consensus 22 ~~~~~~L~~~a~~~al~~~agl~~~~Id~v~~G~~~~~~~~g~~~a----r~~~~~~g~~~~~p~~tV~~~CaSG~~Ai~ 97 (385)
T TIGR02445 22 NTRAEDLSAHLMSKLLARNPKVDPAEVEDIYWGCVQQTLEQGFNIA----RNAALLAQIPHTSAAVTVNRLCGSSMQALH 97 (385)
T ss_pred CCCHHHHHHHHHHHHHHhccCCCHHHcCEEEEecccccccccchHH----HHHHHHCCCCCCcchhhhhhhhHHHHHHHH
Confidence 556889999999999996 599999999999987642221 12233 3332 22333 3788999999999999999
Q ss_pred HHHHHHHhCCCCCCeEEEEEeeccc
Q 023511 126 NCVNWVESSSWDGRYGLVVCTDSAV 150 (281)
Q Consensus 126 ~A~~~l~~g~~~~~~aLVV~~e~~s 150 (281)
.|...|++|.+ +.+|+++.|.+|
T Consensus 98 ~Aa~~I~sG~~--d~vlagG~E~ms 120 (385)
T TIGR02445 98 DAARAIMTGDA--DVCLVGGVEHMG 120 (385)
T ss_pred HHHHHHHCCCC--CEEEEeeehhcc
Confidence 99999999976 999999999887
No 112
>PRK09268 acetyl-CoA acetyltransferase; Provisional
Probab=98.77 E-value=3.6e-08 Score=93.29 Aligned_cols=97 Identities=13% Similarity=0.141 Sum_probs=75.8
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHH
Q 023511 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVN 129 (281)
Q Consensus 50 ~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~ 129 (281)
+.+..+|+.+|++.+|+++|++++|||.+++++..+....+..+..+....++ + ...+++.++++|++++.++..|..
T Consensus 28 ~~~~~eL~~~a~~~al~~agl~~~~Id~vv~G~~~~~~~~~~~~r~~~l~~gl-~-~~~p~~~V~~~CaSG~~ai~~A~~ 105 (427)
T PRK09268 28 DASNQDMLTAALDGLVDRFGLQGERLGEVVAGAVLKHSRDFNLTRECVLGSAL-S-PYTPAYDLQQACGTGLEAAILVAN 105 (427)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecccCCccccHHHHHHHHcCC-C-CCCceeeeechhhHHHHHHHHHHH
Confidence 45789999999999999999999999999998754321112223221111112 2 347789999999999999999999
Q ss_pred HHHhCCCCCCeEEEEEeeccc
Q 023511 130 WVESSSWDGRYGLVVCTDSAV 150 (281)
Q Consensus 130 ~l~~g~~~~~~aLVV~~e~~s 150 (281)
.|++|.+ +.+|+++.|.+|
T Consensus 106 ~I~sG~~--d~vlvgG~E~ms 124 (427)
T PRK09268 106 KIALGQI--DSGIAGGVDTTS 124 (427)
T ss_pred HHHCCCC--CEEEEeeEEccC
Confidence 9999976 999999999987
No 113
>PRK07967 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed
Probab=98.75 E-value=3.5e-07 Score=86.11 Aligned_cols=162 Identities=13% Similarity=0.132 Sum_probs=103.6
Q ss_pred ceeEEeEEEEEcCCcccchhHHHhhh--C---CCC-ceee-eecCceeee---e-----CC-----CCCCHHHHHHHHHH
Q 023511 3 KNVGILAMDIYFPPTCVQQEALEAHD--G---ASK-GKYT-IGLGQECMA---F-----CS-----EVEDVISMSLTAVT 62 (281)
Q Consensus 3 ~~v~I~~ig~~lP~~~v~~~~~~~~~--~---~~~-~~~~-~gi~~r~~~---~-----~~-----~~e~~~~la~~Aa~ 62 (281)
++|.|.|+|...|-- .+.+++.+.+ | +.+ ..+. .+...+... + .+ .-.....|+..|++
T Consensus 2 ~rVvITG~G~vsp~G-~~~~~~w~~l~~G~sgi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~a~~aa~ 80 (406)
T PRK07967 2 RRVVITGLGIVSSIG-NNQQEVLASLREGRSGITFSPEFAEMGMRSQVWGNVKLDPTGLIDRKVMRFMGDASAYAYLAME 80 (406)
T ss_pred CcEEEEcceEECCCC-CCHHHHHHHHHcCCCceeECCcccccCCCCceEEEcCCChhhcCCHHHhhcCCHHHHHHHHHHH
Confidence 589999999999987 4667766643 2 110 0110 010000000 0 00 01225678999999
Q ss_pred HHHHHcCCCcC-----CccEEEEecccCCC--------------------------CCc-chHHHHHHHHhhcCCCCcee
Q 023511 63 NLLEKYKIDPK-----QIGRLEVGSETVID--------------------------KSK-SIKTFLMQIFEKFGNTDIEG 110 (281)
Q Consensus 63 ~aL~~a~l~~~-----dId~li~~s~t~~~--------------------------~~p-~~a~~i~~~l~~~g~~~~~~ 110 (281)
+||+++|++++ .+++++ +|..+.. ..| ..+..|...+++.| ++
T Consensus 81 ~Al~dAGl~~~~~~~~rvGv~~-gs~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~~l~G----p~ 155 (406)
T PRK07967 81 QAIADAGLSEEQVSNPRTGLIA-GSGGGSTRNQVEAADAMRGPRGPKRVGPYAVTKAMASTVSACLATPFKIKG----VN 155 (406)
T ss_pred HHHHHcCCCCccCCCCCEEEEE-ecCCccHHHHHHHHHHHHhccCcccCCchhhcccccchHHHHHHHHHCCCC----Cc
Confidence 99999999754 344444 4432111 011 24555666666654 35
Q ss_pred eecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeeccc------c----------cC------C-----CCccccCcc
Q 023511 111 VDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV------Y----------AE------G-----PARPTGGAA 163 (281)
Q Consensus 111 ~di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s------~----------~~------~-----~~~~~fGDG 163 (281)
+-++.+|++++.||..|..+|+.|++ +.+||.++|..+ + .. + ...++.|+|
T Consensus 156 ~tvs~aCas~~~Ai~~A~~~ir~G~~--d~~lvgg~d~~~~~~~~~f~~~~~ls~~~~~~p~~~~rPFd~~r~G~v~gEG 233 (406)
T PRK07967 156 YSISSACATSAHCIGNAVEQIQLGKQ--DIVFAGGGEELDWEMSCLFDAMGALSTKYNDTPEKASRAYDANRDGFVIAGG 233 (406)
T ss_pred cccccHhHHHHHHHHHHHHHHHcCCC--CEEEEeeecccChHHHHHHHHhhhhccCCCCCCCcCCcCCcCCCCceeeece
Confidence 77899999999999999999999976 999999887632 1 00 1 146789999
Q ss_pred eEEEEEccC
Q 023511 164 AVVMLVGPD 172 (281)
Q Consensus 164 AaA~ll~~~ 172 (281)
|+++||++.
T Consensus 234 aa~lvLe~~ 242 (406)
T PRK07967 234 GGVVVVEEL 242 (406)
T ss_pred EEEEEEeeH
Confidence 999999974
No 114
>PRK07801 acetyl-CoA acetyltransferase; Provisional
Probab=98.74 E-value=4.4e-08 Score=91.51 Aligned_cols=96 Identities=14% Similarity=0.155 Sum_probs=72.2
Q ss_pred CCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCC-CCCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHH
Q 023511 51 EDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVI-DKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVN 129 (281)
Q Consensus 51 e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~-~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~ 129 (281)
.+..+|+.+|++++|+++|++++|||.+|+++.... ...+..+..+....++ + ..++++.++++|++++.++..|.+
T Consensus 24 ~~~~~L~~~a~~~al~dagl~~~~ID~vv~g~~~~~~~~~~~~~~~~~l~~gl-~-~~~p~~~v~~acaSg~~Av~~Aa~ 101 (382)
T PRK07801 24 VHPADLGAHVLKGLVDRTGIDPAAVDDVIFGCVDTIGPQAGNIARTSWLAAGL-P-EEVPGVTVDRQCGSSQQAIHFAAQ 101 (382)
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHcCEEEEEeeccCCcccccHHHHHHHHcCC-C-CCCceeeecchhhhHHHHHHHHHH
Confidence 578999999999999999999999999998754111 1011122211112222 2 236778899999999999999999
Q ss_pred HHHhCCCCCCeEEEEEeeccc
Q 023511 130 WVESSSWDGRYGLVVCTDSAV 150 (281)
Q Consensus 130 ~l~~g~~~~~~aLVV~~e~~s 150 (281)
.|++|.+ +.+||++.|.++
T Consensus 102 ~I~sG~~--d~vLv~G~e~ms 120 (382)
T PRK07801 102 AVMSGTQ--DLVVAGGVQNMS 120 (382)
T ss_pred HHHCCCC--CEEEEcchhhhc
Confidence 9999987 999999999765
No 115
>PRK08142 acetyl-CoA acetyltransferase; Provisional
Probab=98.72 E-value=9.5e-08 Score=89.33 Aligned_cols=103 Identities=5% Similarity=-0.052 Sum_probs=77.6
Q ss_pred eecCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCceeeecccc
Q 023511 37 IGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNA 116 (281)
Q Consensus 37 ~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~ 116 (281)
.|+|+..+... ++.+..+|+.+|+++||+++|++++|||.+++.+..+. .....+...+++ .......+.++
T Consensus 10 vG~g~t~~~~~-~~~~~~~L~~eA~~~Al~DAgl~~~dID~~~~~~~~~~----~~~~~~~~~lGl---~~~~~~~v~~g 81 (388)
T PRK08142 10 VGAYEHPTRKA-PDKSVAQLHAEVAKGALADAGLSLADVDGYFCAGDAPG----LGPASMVDYLGL---KLRHVDSTETG 81 (388)
T ss_pred EEEeeccceeC-CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEcCCCCC----ccHHHHHHhCCC---CCeeeccccCC
Confidence 57776654333 35678999999999999999999999999875322111 111334555554 33556778889
Q ss_pred cchHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 023511 117 CYGGTAALFNCVNWVESSSWDGRYGLVVCTDSA 149 (281)
Q Consensus 117 C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~ 149 (281)
|+++..++..|...|++|.+ +.||||+.|+.
T Consensus 82 g~s~~~a~~~A~~~I~sG~~--d~vLvvg~e~~ 112 (388)
T PRK08142 82 GSSYLAHVGHAAQAIAAGKC--SVALITLAGRP 112 (388)
T ss_pred cHHHHHHHHHHHHHHHcCCC--CEEEEEeeeec
Confidence 99999999999999999977 99999998863
No 116
>PF07451 SpoVAD: Stage V sporulation protein AD (SpoVAD); InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long. This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation [].; PDB: 3LMA_D 3LM6_A.
Probab=98.70 E-value=1.3e-06 Score=77.38 Aligned_cols=184 Identities=14% Similarity=0.051 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHHHHH
Q 023511 53 VISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVE 132 (281)
Q Consensus 53 ~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~~l~ 132 (281)
-..|..+|++.||++++++++|||+++.+---... -.+++..+.++ ++-+-+-++|+.+..+|.+|..++.
T Consensus 51 E~~m~~~A~~~al~Ka~l~~~dId~~~aGDLlnQ~---i~s~f~ar~l~------iPf~GlygACST~~e~l~laa~~vd 121 (329)
T PF07451_consen 51 ESKMQKEAVELALKKAGLKKEDIDYLFAGDLLNQI---ISSSFAARDLG------IPFLGLYGACSTMMESLALAAMLVD 121 (329)
T ss_dssp HHHHHHHHHHHHHHHTT--GGG-SEEEEEETTCCC---CHHHHHHHHHT--------EEEB--CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCeEEEehhhhhhh---HHHHHHHHhcC------CCccchhhHHHHHHHHHHHHHHHHh
Confidence 46799999999999999999999999976433332 34455556554 4568889999999999999999999
Q ss_pred hCCCCCCeEEEEEeeccc-----cc--------CCCCccccCcceEEEEEccCCCc-cccccccccccCCcccccccCCC
Q 023511 133 SSSWDGRYGLVVCTDSAV-----YA--------EGPARPTGGAAAVVMLVGPDAPV-AFESKLRGSHMSHAYDFYKPNLA 198 (281)
Q Consensus 133 ~g~~~~~~aLVV~~e~~s-----~~--------~~~~~~~fGDGAaA~ll~~~~~~-~i~~~~~~s~~~~~~~~~~p~~~ 198 (281)
+|-+ +++|..++.... |+ .++++.----||+|+||++.+.. .+.. .+.++-. |
T Consensus 122 gg~a--~~vla~tSSH~~tAERQfR~P~EyG~Qrp~tAqwTVTGaGa~il~~~~~~p~It~---~T~GkVv-D------- 188 (329)
T PF07451_consen 122 GGFA--DYVLAATSSHFATAERQFRFPTEYGGQRPPTAQWTVTGAGAAILSKEGSGPRITH---ATIGKVV-D------- 188 (329)
T ss_dssp TTS---SEEEEEEEE-CCHHHHHT---GGGT----TT--EE--EEEEEEEESS--SEEEEE---EE----B---------
T ss_pred CCCc--ceEEEEeccccchhhhhccCchhccCCCCCcccEEEeceEEEEEecCCCCcEEEE---EEEEEEE-E-------
Confidence 9976 999999886543 21 12344445678999999987542 2321 1222210 1
Q ss_pred CcccCCCCcccHHHHHHHH-HHHHHHHHHHHHHhhcCCCCCCCCcEEecCC---CChhHHHHHHHhccchhhh
Q 023511 199 SEYPVVDGKLSQTCYLMAL-DTCYKCLCSKYEKLEGKQFSLSNADYFVFHS---PYNKLVQKSFARLLFNDFM 267 (281)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~g~~~~did~~i~Hq---~n~~i~~~~~~~lg~~~~~ 267 (281)
+-..|. +++ -.++ +.+.+.+. .-|+..|.+++|.|.++.-- .+..|+..++++-|++-.+
T Consensus 189 --~G~~D~-~nM---GaAMAPAA~dTI~---~h~~D~g~~p~dYDlIvTGDLg~vG~~il~~Ll~~~G~~i~~ 252 (329)
T PF07451_consen 189 --MGIKDP-NNM---GAAMAPAAADTIE---QHFKDTGRSPDDYDLIVTGDLGKVGRKILRDLLKEKGYDISE 252 (329)
T ss_dssp --SS---T-T-H---HHHHHHHHHHHHH---HHHHHCT--GGG-SEEEESS-HHHHHHHHHHHHHHTT---GG
T ss_pred --cCCCCc-ccc---hhhHhHHHHHHHH---HHHHHhCCChhhcCeEEecchHHHHHHHHHHHHHHcCCCCcc
Confidence 011111 011 1122 23344444 34778999999999999765 5678888888888876544
No 117
>PF08540 HMG_CoA_synt_C: Hydroxymethylglutaryl-coenzyme A synthase C terminal; InterPro: IPR013746 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A synthase, HMG-CoA synthase. Hydroxymethylglutaryl-CoA synthase (2.3.3.10 from EC) catalyses the condensation of acetyl-CoA with acetoacetyl-CoA to produce HMG-CoA and CoA, the second reaction in the mevalonate-dependent isoprenoid biosynthesis pathway. HMG-CoA synthase contains an important catalytic cysteine residue that acts as a nucleophile in the first step of the reaction: the acetylation of the enzyme by acetyl-CoA (its first substrate) to produce an acetyl-enzyme thioester, releasing the reduced coenzyme A. The subsequent nucleophilic attack on acetoacetyl-CoA (its second substrate) leads to the formation of HMG-CoA []. HMG-CoA synthase occurs in eukaryotes, archaea and certain bacteria []. In vertebrates, there are two isozymes located in different subcellular compartments: a cytosolic form that is the starting point of the mevalonate pathway (leads to cholesterol and other sterolic and isoprenoid compounds), and a mitochondrial form responsible for ketone body biosynthesis. HMG-CoA is also found in other eukaryotes such as insects, plants and fungi []. In bacteria, isoprenoid precursors are generally synthesised via an alternative, non-mevalonate pathway, however a number of Gram-positive pathogens utilise a mevalonate pathway involving HMG-CoA synthase that is parallel to that found in eukaryotes [, ]. This entry represents the C-terminal domain of HMG-CoA synthase enzymes from both eukaryotes and prokaryotes.; GO: 0004421 hydroxymethylglutaryl-CoA synthase activity, 0008299 isoprenoid biosynthetic process; PDB: 1TXT_D 1TVZ_A 1X9E_B 2HDB_B 3V4X_A 3V4N_C 2P8U_A 2FA0_A 2F9A_A 2F82_A ....
Probab=98.68 E-value=1.9e-08 Score=89.50 Aligned_cols=92 Identities=68% Similarity=1.106 Sum_probs=68.8
Q ss_pred ccccccCCcccccccCCCCcccCCCCcccHHHHHHHHHHHHHHHHHHHHHh---hcCCCCCCCCcEEecCCCChhHHHHH
Q 023511 181 LRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKL---EGKQFSLSNADYFVFHSPYNKLVQKS 257 (281)
Q Consensus 181 ~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~g~~~~did~~i~Hq~n~~i~~~~ 257 (281)
..++++.+..|||+|+..+++|++||+++...|..++..+++.+.++.+.+ ...+.+.+|+|+++||.|..+|.++.
T Consensus 7 ~~~~~m~~~yDFyKP~~~seyP~VDG~~S~~~Yl~ald~~y~~y~~k~~~~~~~~~~~~~l~~~d~~~fH~Py~klv~Ka 86 (282)
T PF08540_consen 7 LRGSHMEHVYDFYKPDLSSEYPVVDGKLSIQCYLDALDKCYKRYKEKVEKLANRGNKGTSLDDFDYVCFHSPYCKLVQKA 86 (282)
T ss_dssp EEEEEE----SEE-BTTT-SS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSST--GGG-SEEEE--SSHHHHHHH
T ss_pred CceeehhhchhccCCCCCCCCcEEchHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccccceEEEecCchHHHHHH
Confidence 447888999999999988999999999999999999999999998664322 25688899999999999999999999
Q ss_pred HHhccchhhhhcCCC
Q 023511 258 FARLLFNDFMRNARL 272 (281)
Q Consensus 258 ~~~lg~~~~~~~~~~ 272 (281)
..+|.+++...++..
T Consensus 87 ~~rl~~~D~~~~~~~ 101 (282)
T PF08540_consen 87 FARLLYNDFLRNPSS 101 (282)
T ss_dssp HHHHHHHHHHHTTTC
T ss_pred HHHHHHhhhhhcccc
Confidence 999999999888776
No 118
>PRK08257 acetyl-CoA acetyltransferase; Validated
Probab=98.61 E-value=3.8e-07 Score=87.92 Aligned_cols=108 Identities=11% Similarity=0.033 Sum_probs=79.8
Q ss_pred eecCceeeeeCCCC--CCHHHHHHHHHHHHHHHcCCC--cCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCceeee
Q 023511 37 IGLGQECMAFCSEV--EDVISMSLTAVTNLLEKYKID--PKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVD 112 (281)
Q Consensus 37 ~gi~~r~~~~~~~~--e~~~~la~~Aa~~aL~~a~l~--~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~d 112 (281)
.|+|+..++...++ .+..+|+.+|+++||+++|++ ++|||.+++++..... .......+...+|+. ......
T Consensus 9 VGvG~t~~~~~~~~~~~s~~~L~~eA~~~Al~DAGl~~~~~dID~v~v~~~~~~~-~~~~~~~la~~lGl~---p~~~~~ 84 (498)
T PRK08257 9 VGVGQVTERPDDPAYGLEPVDLMAAAARAAAADAGADAVLEAIDSVAVVNQLSWR-YRDPPGLLAERLGAD---PARTVY 84 (498)
T ss_pred EEeeecccccCCcccCCCHHHHHHHHHHHHHHhcCCCcCHHHCCEEEEecccccc-ccCHHHHHHHHcCCC---CcceeE
Confidence 57877653322223 278999999999999999999 9999999976542211 112335555666653 234455
Q ss_pred cccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeeccc
Q 023511 113 STNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV 150 (281)
Q Consensus 113 i~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s 150 (281)
...||.+...++..|...|++|.+ +.|||+++|+.+
T Consensus 85 ~~~GG~s~~~~v~~Aa~~IasG~a--dvVLv~G~E~~~ 120 (498)
T PRK08257 85 SPVGGNSPQRLVNEAALRIAAGEA--DVALVAGAEAQS 120 (498)
T ss_pred ecCCCHHHHHHHHHHHHHHHCCCC--CEEEEeeeeecc
Confidence 667888999999999999999977 999999999865
No 119
>PRK06066 acetyl-CoA acetyltransferase; Provisional
Probab=98.60 E-value=3.5e-07 Score=85.40 Aligned_cols=105 Identities=12% Similarity=0.084 Sum_probs=72.9
Q ss_pred eecCceeeeeCCCCCCHHHHHHHHHHHHHHHcC-CCc-CCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCceeeecc
Q 023511 37 IGLGQECMAFCSEVEDVISMSLTAVTNLLEKYK-IDP-KQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDST 114 (281)
Q Consensus 37 ~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~-l~~-~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~ 114 (281)
.|+|...+....++.+..+|+.+|+++||+++| +++ +|||.+++++.............+...++..+ .+.+.+
T Consensus 9 vG~g~t~~~~~~~~~s~~eL~~eA~~~Al~DAG~l~~~~dId~~~~~~~~~~~~~~~~~~~~~~~lg~~~---~~~~~v- 84 (385)
T PRK06066 9 VGIGWYGFRPTTPEVSFREMMFEAASRAYKDAGNINPRRDVDSFISCQEDFWEGIAIADEFAPDQIGGAM---RPTMTV- 84 (385)
T ss_pred EEeeecCCcCCCCCCCHHHHHHHHHHHHHHhcCCCCChhcCCEEEEecCcccCcccccchhHHHHcccCC---CCeEEE-
Confidence 577766532122367789999999999999999 997 79999987542111101112223345555432 223333
Q ss_pred cccchHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 023511 115 NACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSA 149 (281)
Q Consensus 115 ~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~ 149 (281)
|+++..++..|...|++|.+ ++|||++.|+.
T Consensus 85 --~~sg~~a~~~A~~aV~sG~~--d~vLv~g~~~~ 115 (385)
T PRK06066 85 --AGDGLQGLAHAVMHINSGLA--NVVVVEAHSKP 115 (385)
T ss_pred --eCcHHHHHHHHHHHHHcCCC--CEEEEEEEeec
Confidence 88999999999999999987 99999998853
No 120
>PRK07855 lipid-transfer protein; Provisional
Probab=98.56 E-value=4.8e-07 Score=84.64 Aligned_cols=100 Identities=9% Similarity=-0.036 Sum_probs=74.4
Q ss_pred eecCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCceeeecccc
Q 023511 37 IGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNA 116 (281)
Q Consensus 37 ~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~ 116 (281)
.|+|...+... ++.+..+|+.+|+++||+++|++++|||.+++.+. .. .+. ..+.+.+++.+. .....+.++
T Consensus 9 vG~g~t~~~r~-~~~~~~~L~~eA~~~Al~DAgl~~~dID~~~~~~~--~~-~~~--~~l~~~lGl~~~--~~~~~v~~g 80 (386)
T PRK07855 9 VGIGATEFSKN-SGRSELRLACEAVLAALDDAGLAPSDVDGLVTFTM--DT-NPE--IAVARALGIGEL--KFFSRIHYG 80 (386)
T ss_pred EEeeecccccC-CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEecC--cc-ccH--HHHHHHCCCCCC--cceeeecCC
Confidence 56666543222 35578999999999999999999999999986432 11 222 335555554321 334578899
Q ss_pred cchHHHHHHHHHHHHHhCCCCCCeEEEEEe
Q 023511 117 CYGGTAALFNCVNWVESSSWDGRYGLVVCT 146 (281)
Q Consensus 117 C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~ 146 (281)
|+++..++..|...|++|.+ +.|||++.
T Consensus 81 g~sg~~~~~~A~~~I~sG~~--d~vLv~g~ 108 (386)
T PRK07855 81 GGAACATVQQAAMAVATGVA--DVVVCYRA 108 (386)
T ss_pred cHHHHHHHHHHHHHHHCCCC--CEEEEEee
Confidence 99999999999999999987 99999987
No 121
>PRK06025 acetyl-CoA acetyltransferase; Provisional
Probab=98.55 E-value=4.5e-07 Score=85.10 Aligned_cols=98 Identities=12% Similarity=0.078 Sum_probs=80.9
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCC-CcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHH
Q 023511 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDK-SKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCV 128 (281)
Q Consensus 50 ~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~-~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~ 128 (281)
+-++.+|+..+++.+|++++++|++||-||++...+.-. .+.++-......++. ..++++-|+..|+|++.|+..|.
T Consensus 26 ~~~~~~L~~~~~~~~l~r~~i~~~~id~vi~G~~~~~g~~g~n~aR~~al~aglp--~~vp~~tvnr~C~Sgl~ai~~aa 103 (417)
T PRK06025 26 HLHPQHLAATVLKALAERNGLNTADVDDIIWSTSSQRGKQGGDLGRMAALDAGYD--IKASGVTLDRFCGGGITSVNLAA 103 (417)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCHHHCCEEEEEcCCCcCcccCcHHHHHHHhCCCC--CCCCeeeeccccchHHHHHHHHH
Confidence 457899999999999999999999999999988755432 244554444444443 36899999999999999999999
Q ss_pred HHHHhCCCCCCeEEEEEeecccc
Q 023511 129 NWVESSSWDGRYGLVVCTDSAVY 151 (281)
Q Consensus 129 ~~l~~g~~~~~~aLVV~~e~~s~ 151 (281)
..|++|.. +.+|..+.|.+|.
T Consensus 104 ~~I~~G~~--~~~laGG~EsmS~ 124 (417)
T PRK06025 104 AQIMSGME--DLVIAGGTEMMSY 124 (417)
T ss_pred HHHHcCCC--CEEEEeeeeccCC
Confidence 99999976 9999999999983
No 122
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=98.53 E-value=3.3e-08 Score=73.09 Aligned_cols=49 Identities=20% Similarity=0.186 Sum_probs=38.8
Q ss_pred hhcCCCCCCCCcEEecCCCChhHHHHHHHhccchhhhhcCCCccccccC
Q 023511 231 LEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNARLPSFLHLS 279 (281)
Q Consensus 231 l~~~g~~~~did~~i~Hq~n~~i~~~~~~~lg~~~~~~~~~~~~~~~~~ 279 (281)
|+++|++++|||+|++||+|.++++.+.+++|++.++.-...++|+|+.
T Consensus 1 L~~~g~~~~did~~i~hq~~~~~~~~~~~~lgi~~~~~~~~~~~~Gn~~ 49 (90)
T PF08541_consen 1 LERAGLSPDDIDHFIPHQASKKILDSIAKRLGIPPERFPDNLAEYGNTG 49 (90)
T ss_dssp HHHTT--GGGESEEEE-SSSHHHHHHHHHHHTS-GGGBE-THHHH-B-G
T ss_pred CccccCCHHHCCEEEeCCCCHHHHHHHHHHcCCcHHHHHHHHhccCcch
Confidence 5679999999999999999999999999999999998777788998874
No 123
>COG0304 FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.52 E-value=2.3e-06 Score=80.21 Aligned_cols=227 Identities=14% Similarity=0.114 Sum_probs=130.5
Q ss_pred CceeEEeEEEEEcCCcccchhHHHhhh-----CCC-Cceee-eecCce-----ee---eeCC----CCCCHHHHHHHHHH
Q 023511 2 AKNVGILAMDIYFPPTCVQQEALEAHD-----GAS-KGKYT-IGLGQE-----CM---AFCS----EVEDVISMSLTAVT 62 (281)
Q Consensus 2 ~~~v~I~~ig~~lP~~~v~~~~~~~~~-----~~~-~~~~~-~gi~~r-----~~---~~~~----~~e~~~~la~~Aa~ 62 (281)
.++|.|.|+|...|--. +.++..+.+ +.. .+.+. ..+..+ .. .+.. .-.....++..|+.
T Consensus 2 ~~rvviTG~g~vs~lG~-~~~~~~~~l~~g~sgi~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~d~~~~~a~~Aa~ 80 (412)
T COG0304 2 MRRVVITGLGIVSSLGN-GVEEVWAALLAGKSGIRPITRFDASGLGVKIAGEIKDLDDQIAKKERRFMDRFSQLAVVAAV 80 (412)
T ss_pred CceEEEecceeeecccC-CHHHHHHHHhcCCCCCCccccccccCCCCcccccccccccccchHHhhcccHHHHHHHHHHH
Confidence 56899999999988763 445544432 211 11111 111100 00 0000 11247889999999
Q ss_pred HHHHHcCCC-cCCcc--E-EEEecccCCC----------------------C----Cc-chHHHHHHHHhhcCCCCceee
Q 023511 63 NLLEKYKID-PKQIG--R-LEVGSETVID----------------------K----SK-SIKTFLMQIFEKFGNTDIEGV 111 (281)
Q Consensus 63 ~aL~~a~l~-~~dId--~-li~~s~t~~~----------------------~----~p-~~a~~i~~~l~~~g~~~~~~~ 111 (281)
+||+++|++ ..+.+ . ++++|..+.. . .| ..+..+...++..| +.+
T Consensus 81 eAl~dAgl~~~~~~~~r~gv~iGsg~gg~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~vs~~~g~~G----~~~ 156 (412)
T COG0304 81 EALEDAGLDNELNVDMRVGVAIGSGIGGLEDIEFDLDALLLEGLRKRISPFLVPKMLPNLAAGNVAIVFGLKG----PNY 156 (412)
T ss_pred HHHHHcCCCcccccCccEEEEEeccCCCcchhhhHHHHHHhcCCccCcCchhhhhhccchHHHHHHHHhCCCC----CcC
Confidence 999999998 33332 1 2233332111 0 11 23344455555544 367
Q ss_pred ecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeec-cc--------------cc--C-----C-----CCccccCcce
Q 023511 112 DSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDS-AV--------------YA--E-----G-----PARPTGGAAA 164 (281)
Q Consensus 112 di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~-~s--------------~~--~-----~-----~~~~~fGDGA 164 (281)
.+..+|+++..++..|..+|+.|.+ +.+|+.++|. .+ .+ + + ...+++|.||
T Consensus 157 ~~~tACatg~~AIg~A~~~I~~G~a--d~~iaGG~e~~i~~~~i~gF~am~Alst~nd~p~~asrPfd~~RdGfv~gEGa 234 (412)
T COG0304 157 TPVTACATGAHAIGDAVRLIRLGKA--DVVIAGGAEAAITPLGIAGFEAMRALSTRNDDPEKASRPFDKNRDGFVIGEGA 234 (412)
T ss_pred ChhhhHHhHHHHHHHHHHHHHcCCC--CEEEEcccccccCHHHHHHHHHHHHhccCCCCccccCCCCCCCCCCEEEecce
Confidence 8889999999999999999999976 8999988876 22 11 0 1 2468999999
Q ss_pred EEEEEccCCC---c--cccccccccccCCcccccccCCCCcccCCCCcccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 023511 165 VVMLVGPDAP---V--AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLS 239 (281)
Q Consensus 165 aA~ll~~~~~---~--~i~~~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 239 (281)
+++||+.-+- . .|..... .++...+.+.... |..++. ... +.+. .+|+.+|++++
T Consensus 235 g~lVLE~~ehA~aRGA~Iyaei~-G~g~~~Da~h~t~-----P~p~g~--------Ga~---~am~---~AL~~Agl~~~ 294 (412)
T COG0304 235 GALVLEELEHALARGAKIYAEIV-GYGTTSDAYHITA-----PAPDGE--------GAI---RAMR---AALADAGLTPE 294 (412)
T ss_pred eEEEecChhhHHhCCCceEEEEE-EEEecccccccCC-----CCCCCc--------hHH---HHHH---HHHHHcCCCHh
Confidence 9999998541 1 2333222 2222222221111 111111 011 2222 34778999999
Q ss_pred CCcEEecCCCChhHHH
Q 023511 240 NADYFVFHSPYNKLVQ 255 (281)
Q Consensus 240 did~~i~Hq~n~~i~~ 255 (281)
||||+-.|=-+.+.-+
T Consensus 295 ~idYinaHgTsT~~nD 310 (412)
T COG0304 295 DIDYINAHGTSTPAND 310 (412)
T ss_pred HCCEEeCCCccCCCcc
Confidence 9999999975554444
No 124
>PRK06690 acetyl-CoA acetyltransferase; Provisional
Probab=98.41 E-value=1.5e-06 Score=80.52 Aligned_cols=91 Identities=14% Similarity=0.190 Sum_probs=73.0
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCC-CceeeecccccchHHHHHHHHH
Q 023511 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNT-DIEGVDSTNACYGGTAALFNCV 128 (281)
Q Consensus 50 ~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~-~~~~~di~~~C~g~~~aL~~A~ 128 (281)
+.++.+|+..|++.+++ |++ ++||.+|+++..+.. +..+-.+...+ |.+ +++++-++++|++++.++..|.
T Consensus 22 ~~~~~~L~~~a~~~~~~--gi~-~~Id~vi~G~~~~~~--~~~~r~~~~~~---Gl~~~~p~~tV~~~CaSG~~Ai~~a~ 93 (361)
T PRK06690 22 DYEVQQLAAPLLTFLSK--GME-REIDDVILGNVVGPG--GNVARLSALEA---GLGLHIPGVTIDRQCGAGLEAIRTAC 93 (361)
T ss_pred CCCHHHHHHHHHHHHHc--cch-hhcCEEEEEecCCCc--chHHHHHHHHc---CCCCCCCceehhhhhhHHHHHHHHHH
Confidence 34689999999999865 886 899999999875442 22222233434 444 6889999999999999999999
Q ss_pred HHHHhCCCCCCeEEEEEeeccc
Q 023511 129 NWVESSSWDGRYGLVVCTDSAV 150 (281)
Q Consensus 129 ~~l~~g~~~~~~aLVV~~e~~s 150 (281)
.+|++|.+ +.+|+++.|.+|
T Consensus 94 ~~I~sG~~--d~~l~gG~E~ms 113 (361)
T PRK06690 94 HFIQGGAG--KCYIAGGVESTS 113 (361)
T ss_pred HHHHCCCC--CEEEEecccccc
Confidence 99999976 999999999987
No 125
>PRK07937 lipid-transfer protein; Provisional
Probab=98.40 E-value=1.2e-06 Score=80.87 Aligned_cols=104 Identities=13% Similarity=0.087 Sum_probs=67.1
Q ss_pred eecCceeeeeCCCCCCH-HHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCc--chHHHHHHHHhhcCCCCceeeec
Q 023511 37 IGLGQECMAFCSEVEDV-ISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSK--SIKTFLMQIFEKFGNTDIEGVDS 113 (281)
Q Consensus 37 ~gi~~r~~~~~~~~e~~-~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p--~~a~~i~~~l~~~g~~~~~~~di 113 (281)
.|+|...+....++.+. .+|+.+|+++||+++|++++|||.++.++ .+.... .....+... .|.. ..+..
T Consensus 7 vG~g~t~~~~~~~~~~~~~el~~eA~~~Al~DAgl~~~dID~~~~~~--~~~~~~~~~~~~~~~~~---~G~~--~~~~~ 79 (352)
T PRK07937 7 VGFAQAPHVRRTDGTTNGVEMLMPCFAELYAELGITKSDIGFWCSGS--SDYLAGRAFSFISAIDS---IGAV--PPINE 79 (352)
T ss_pred EEeeccccccCCCCCCcHHHHHHHHHHHHHHHcCCCHHHCCEEEEEc--cccccccccchhhHHhh---ccCC--CCCce
Confidence 46665553222223344 89999999999999999999999886432 222111 111112232 3321 12223
Q ss_pred ccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 023511 114 TNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSA 149 (281)
Q Consensus 114 ~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~ 149 (281)
.+.|+++..++..|...|++|.+ +.|||++.|+.
T Consensus 80 ~~v~~~g~~a~~~A~~aI~sG~~--d~VLv~g~~k~ 113 (352)
T PRK07937 80 SHVEMDAAWALYEAWVKLLTGEV--DTALVYGFGKS 113 (352)
T ss_pred EEecCcHHHHHHHHHHHHhcCCC--CEEEEEEeccc
Confidence 33334688899999999999987 99999998864
No 126
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=98.37 E-value=2e-06 Score=95.86 Aligned_cols=137 Identities=11% Similarity=0.018 Sum_probs=83.5
Q ss_pred HHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeeccc-------c--------------
Q 023511 93 KTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV-------Y-------------- 151 (281)
Q Consensus 93 a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s-------~-------------- 151 (281)
+..|...+++.| +++-+..+|++++.||+.|.+.|++|.+ +.+|+-+++... +
T Consensus 186 A~RIS~~f~L~G----ps~tVdtACsSSL~Al~~A~~~L~~G~~--D~alvGGv~~~~~p~~~~~fs~~~~lS~~g~crp 259 (2582)
T TIGR02813 186 SGRIANRFDLGG----MNCVVDAACAGSLAAIRMALSELLEGRS--EMMITGGVCTDNSPFMYMSFSKTPAFTTNEDIQP 259 (2582)
T ss_pred HHHHHHHhCCCC----CcccccchhHHHHHHHHHHHHHHHcCCC--CEEEEecceeeCCHHHHHHHHhccCcCCCCCccC
Confidence 455555565544 3688899999999999999999999976 888888876521 1
Q ss_pred -cCCCCccccCcceEEEEEccCCC----c-cccccccccccCCcccccccCCCCcccCCCCcccHHHHHHHHHHHHHHHH
Q 023511 152 -AEGPARPTGGAAAVVMLVGPDAP----V-AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLC 225 (281)
Q Consensus 152 -~~~~~~~~fGDGAaA~ll~~~~~----~-~i~~~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (281)
+.+...+++|+|++++||++-.. . .|.....++...+ + |........ +... ... .+.
T Consensus 260 FD~~adG~v~GEGag~vvLkrL~dA~~dGd~IyAvI~G~g~~~--D------G~~~~itaP--~~~g----q~~---~i~ 322 (2582)
T TIGR02813 260 FDIDSKGMMIGEGIGMMALKRLEDAERDGDRIYAVIKGVGASS--D------GKFKSIYAP--RPEG----QAK---ALK 322 (2582)
T ss_pred CCCCCCcccccceEEEEEeCcHHHHHhCCCcEEEEEEEEEEcC--C------CCCCCCcCC--CHHH----HHH---HHH
Confidence 11124689999999999997432 1 2322211211110 0 000000000 0111 111 222
Q ss_pred HHHHHhhcCCCCCCCCcEEecCCCChhHHH
Q 023511 226 SKYEKLEGKQFSLSNADYFVFHSPYNKLVQ 255 (281)
Q Consensus 226 ~~~~~l~~~g~~~~did~~i~Hq~n~~i~~ 255 (281)
++|+.+|++++||+|+-.|=-+.+.-+
T Consensus 323 ---~Al~~Agi~p~~I~yIeaHGTGT~~gD 349 (2582)
T TIGR02813 323 ---RAYDDAGFAPHTCGLIEAHGTGTAAGD 349 (2582)
T ss_pred ---HHHHHcCCCHHHCCEEEecCCCCCCCC
Confidence 346779999999999999986655533
No 127
>COG3321 Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.35 E-value=2.9e-05 Score=81.10 Aligned_cols=175 Identities=14% Similarity=0.103 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHcCCCcCCcc----EEEEecccCCCCCcc-------------------hHHHHHHHHhhcCCCCceee
Q 023511 55 SMSLTAVTNLLEKYKIDPKQIG----RLEVGSETVIDKSKS-------------------IKTFLMQIFEKFGNTDIEGV 111 (281)
Q Consensus 55 ~la~~Aa~~aL~~a~l~~~dId----~li~~s~t~~~~~p~-------------------~a~~i~~~l~~~g~~~~~~~ 111 (281)
-|..+.+-+||+++|+.|+.+. .|+.+++..+|.... .+..|...+++.| +++
T Consensus 93 RllLe~aw~AlEdAG~~~~~l~g~~tgV~~g~~~~~y~~~~~~~~~~~~~~~~~g~~~~~~a~Risy~l~l~G----Ps~ 168 (1061)
T COG3321 93 RLLLEVAWEALEDAGIYPDSLRGSATGVFAGASVADYLLLLLADDEAEPEYAITGNSSSVAAGRISYVLGLSG----PSV 168 (1061)
T ss_pred hHHHHHHHHHHHHcCCCccccCCcceEEEEeeccCccccccccccccccceecccchhhHHHHHHHHHhcCCC----CCc
Confidence 3999999999999999999998 466666666664332 4455566677655 468
Q ss_pred ecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeeccc-------cc---------------CCCCccccCcceEEEEE
Q 023511 112 DSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV-------YA---------------EGPARPTGGAAAVVMLV 169 (281)
Q Consensus 112 di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s-------~~---------------~~~~~~~fGDGAaA~ll 169 (281)
.|..+|++.+.|+++|...|+.|++ +.+|+=+....- +. .....++.|.|+++++|
T Consensus 169 ~vdtaCSSsLvAvhlA~~sL~~Ge~--d~alaGgv~l~~~p~~~~~~~~~g~ls~~g~c~~fd~~adG~v~geG~g~vvL 246 (1061)
T COG3321 169 TVDTACSSSLVAVHLACQSLRLGEC--DLALAGGVNLVLSPESSYLFSAGGMLSPDGRCKAFDADADGYVRGEGAGVVVL 246 (1061)
T ss_pred cccchhhHHHHHHHHHHHHHHcCCC--CEEEecceEeccCCcceeeeecccCcCCCCcceecccCCCCEEEeeeEEEEEE
Confidence 9999999999999999999999975 777765554431 10 11236799999999999
Q ss_pred ccCCC----c-cccccccccccCCcccccccCCCCcccCCCCcccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcEE
Q 023511 170 GPDAP----V-AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYF 244 (281)
Q Consensus 170 ~~~~~----~-~i~~~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~did~~ 244 (281)
.+-.. . .|.....++...+ .|.....+..+ . .+-.++++ ++|+.+|+.+++|+|+
T Consensus 247 Krl~~A~~dgd~IyavI~gsavn~--------dG~~~gltaP~--~----~aQ~~v~~------~al~~a~i~p~tv~yv 306 (1061)
T COG3321 247 KRLSDAERDGDRIYAVIRGSAVNQ--------DGRSNGLTAPN--L----EAQADVIR------EALADAGIDPATVQYV 306 (1061)
T ss_pred EEhHHHHhCCCeEEEEEEeeeecc--------CCCcCCCCCCC--H----HHHHHHHH------HHHHhcCCCcccCcEE
Confidence 97432 1 2332222221110 01000111111 1 12222223 3467799999999999
Q ss_pred ecCCCChhHHH
Q 023511 245 VFHSPYNKLVQ 255 (281)
Q Consensus 245 i~Hq~n~~i~~ 255 (281)
=.|.-+..+-+
T Consensus 307 EaHgTGT~lGD 317 (1061)
T COG3321 307 EAHGTGTPLGD 317 (1061)
T ss_pred EecCCCCCCcC
Confidence 99996655544
No 128
>KOG1406 consensus Peroxisomal 3-ketoacyl-CoA-thiolase P-44/SCP2 [Lipid transport and metabolism]
Probab=98.20 E-value=3.9e-06 Score=72.86 Aligned_cols=110 Identities=20% Similarity=0.180 Sum_probs=84.0
Q ss_pred ceeeeecCceeeeeCC--CCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCcee
Q 023511 33 GKYTIGLGQECMAFCS--EVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEG 110 (281)
Q Consensus 33 ~~~~~gi~~r~~~~~~--~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~ 110 (281)
..+..|+|...+--+. ++.+-.||+.+|+++||+++++.-++|+--+++-..++.. .. |+.+-..|.+.++.
T Consensus 7 rvyvvgvgmtkf~kpg~~~~~dypd~a~ea~tkal~da~ikys~vqqa~vgyvfgdst---cg---qraiyevgmtgipi 80 (408)
T KOG1406|consen 7 RVYVVGVGMTKFEKPGRVADWDYPDFAKEAITKALQDAGIKYSEVQQAVVGYVFGDST---CG---QRAIYEVGMTGIPI 80 (408)
T ss_pred eEEEEecceeeecCCCcccCCCCchHHHHHHHHHHHhcCCCHHHHHhhhheeeecCCc---cc---hHHHHhccccCcce
Confidence 3445688877643222 3556789999999999999999999998666554444431 11 24444455566789
Q ss_pred eecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeeccc
Q 023511 111 VDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV 150 (281)
Q Consensus 111 ~di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s 150 (281)
|+++++|+++.+||.+|...+++|.. +.||..+-|++.
T Consensus 81 ~nvnnncatgssalflakqiiesgn~--dcvlalgfekm~ 118 (408)
T KOG1406|consen 81 YNVNNNCATGSSALFLAKQIIESGNS--DCVLALGFEKME 118 (408)
T ss_pred eeccCccccCchHHHHHHHHHhcCCc--ceEEeechhhhC
Confidence 99999999999999999999999965 999999999876
No 129
>KOG1394 consensus 3-oxoacyl-(acyl-carrier-protein) synthase (I and II) [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.06 E-value=8.2e-05 Score=67.30 Aligned_cols=224 Identities=16% Similarity=0.150 Sum_probs=129.0
Q ss_pred ceeEEeEEEEEcCCcccchhHHHhhh----CCCC---c---eeee-ecCceeeeeCCC------C----CCHHHHHHHHH
Q 023511 3 KNVGILAMDIYFPPTCVQQEALEAHD----GASK---G---KYTI-GLGQECMAFCSE------V----EDVISMSLTAV 61 (281)
Q Consensus 3 ~~v~I~~ig~~lP~~~v~~~~~~~~~----~~~~---~---~~~~-gi~~r~~~~~~~------~----e~~~~la~~Aa 61 (281)
++|.|.|+|...|=-.=....+.... |+.. . .+.. -.|...+ +..+ + .+...|++.|+
T Consensus 24 rRVVITGmG~VTplG~~v~~~w~~Ll~GesGI~~l~~~d~k~~p~~v~g~Ip~-f~~e~~~s~~~~r~ms~~~~~al~aa 102 (440)
T KOG1394|consen 24 RRVVITGMGAVTPLGNGVHTSWRNLLSGESGISSLEGPDYKSIPFTVAGKIPR-FSVEDYVSKGDERRMSKFTKLALTAA 102 (440)
T ss_pred eeEEEeccceeecCCCChHHHHHHhhccccCcccccccccccCcchheeeccc-cccccccchhhhhhhhHHHHHHHHHH
Confidence 68999999999998753334443332 2210 1 1111 1111110 1111 1 24788999999
Q ss_pred HHHHHHcCCCcC---Ccc----EEEEecccC---------------------CCCCc-----chHHHHHHHHhhcCCCCc
Q 023511 62 TNLLEKYKIDPK---QIG----RLEVGSETV---------------------IDKSK-----SIKTFLMQIFEKFGNTDI 108 (281)
Q Consensus 62 ~~aL~~a~l~~~---dId----~li~~s~t~---------------------~~~~p-----~~a~~i~~~l~~~g~~~~ 108 (281)
++||+++++.+. +.| .+.++|.-+ ++.+| ..+.+|...+++.|
T Consensus 103 ~eAL~da~~~~~~~~e~dk~~~GV~iGtgmg~l~~i~e~a~~~~~~g~rrvsPffVPkil~NM~ag~vsm~~gl~G---- 178 (440)
T KOG1394|consen 103 EEALKDAGLLDVNLSEEDKEKTGVLIGTGMGDLEDIYETAQNLSEKGYRRVSPFFVPKILTNMAAGYVSMKYGLRG---- 178 (440)
T ss_pred HHHHHhcCCCCcccchhhhhhhceEeccccccHHHHHHHHHHHHHhcccccCccccchhhcccccchhhhhhcCcC----
Confidence 999999999876 222 233344321 22334 24555666666655
Q ss_pred eeeecccccchHHHHHHHHHHHHHhCCCCCCeEEEEE-eeccc-------c---------cC------C-----CCcccc
Q 023511 109 EGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVC-TDSAV-------Y---------AE------G-----PARPTG 160 (281)
Q Consensus 109 ~~~di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~-~e~~s-------~---------~~------~-----~~~~~f 160 (281)
+...++.+|+.+..++--|.++|+.|.+ .++|.+ +|.+- | .+ + ...+++
T Consensus 179 pnhsvSTACATg~h~igda~n~Ir~Gda---DvmlAGgsE~~I~PlslaGF~r~RALSt~nd~P~~aSRPfD~~RdGFVm 255 (440)
T KOG1394|consen 179 PNHSVSTACATGNHCIGDAFNFIRLGDA---DVMLAGGSEACINPLSLAGFSRARALSTRNDNPQKASRPFDKKRDGFVM 255 (440)
T ss_pred CchhhHhhhhhccchHHHHHHHHHhCcc---ceeeccCcceeecchhhhhHHHHHHhhhcCCCccccCCCCccCCCceee
Confidence 2467888999999999999999999964 445544 45432 1 11 1 136899
Q ss_pred CcceEEEEEccCC----Cc-cccccccccc-cCCcccccccCCCCcccCCCCcccHHHHHHHHHHHHHHHHHHHHHhhcC
Q 023511 161 GAAAVVMLVGPDA----PV-AFESKLRGSH-MSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGK 234 (281)
Q Consensus 161 GDGAaA~ll~~~~----~~-~i~~~~~~s~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 234 (281)
|.|++.+|||.=+ +. .|...+++.. +.+...+-.| ..++. .++ -.++ .+|+.+
T Consensus 256 GEGagvlvlEelEHA~~RgA~I~AE~lGygls~Da~HiT~P-------~~dG~-------Ga~----~am~---raL~~A 314 (440)
T KOG1394|consen 256 GEGAGVLVLEELEHAKKRGAPIYAEVLGYGLSSDAYHITSP-------DPDGA-------GAV----LAME---RALKDA 314 (440)
T ss_pred ccceeEEehHhHHHHHHcCCceeHHhhcCcccccccccCCC-------CCCcc-------hHH----HHHH---HHHHHc
Confidence 9999999999632 11 3444333321 1122222222 12221 111 1222 346779
Q ss_pred CCCCCCCcEEecCCCChhHHH
Q 023511 235 QFSLSNADYFVFHSPYNKLVQ 255 (281)
Q Consensus 235 g~~~~did~~i~Hq~n~~i~~ 255 (281)
|++++||||+=-|--+...-+
T Consensus 315 gl~pe~i~YvNAHATST~~GD 335 (440)
T KOG1394|consen 315 GLSPEDIDYVNAHATSTPLGD 335 (440)
T ss_pred CCChhhcCeeecccccCcCch
Confidence 999999999999986655544
No 130
>COG0183 PaaJ Acetyl-CoA acetyltransferase [Lipid metabolism]
Probab=97.82 E-value=7.2e-05 Score=70.15 Aligned_cols=94 Identities=15% Similarity=0.140 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHc--CCCcCCccEEEEecccCCC-CCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHH
Q 023511 53 VISMSLTAVTNLLEKY--KIDPKQIGRLEVGSETVID-KSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVN 129 (281)
Q Consensus 53 ~~~la~~Aa~~aL~~a--~l~~~dId~li~~s~t~~~-~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~ 129 (281)
..++.....+..+++. ++++.+||-++.++..+.. ..+..+..+...+++.+ +++++.++.+|++++.|+..|..
T Consensus 27 ~e~l~~a~~~a~~~~~~~~vd~~~v~~~~~G~~~~~g~~~~~~ar~~a~~aGl~~--~~p~~~V~~~c~SG~~Av~~A~~ 104 (392)
T COG0183 27 AEALGAALIDAGLERAPADVDAADVDDVILGCVLQAGEQGQNIARQAALAAGLPG--SVPAVTVNRACASGLAAVRLAAQ 104 (392)
T ss_pred HHHHHHHHHHHHhhhccccCCHHHhhhheeccccccccccccHHHHHHHHcCCCC--CCCceEEeccchhHHHHHHHHHH
Confidence 4444444444444322 4666678888887655442 34456665556555432 48899999999999999999999
Q ss_pred HHHhCCCCCCeEEEEEeeccc
Q 023511 130 WVESSSWDGRYGLVVCTDSAV 150 (281)
Q Consensus 130 ~l~~g~~~~~~aLVV~~e~~s 150 (281)
.|++|.+ +.+|+++.|++|
T Consensus 105 ~I~sG~~--dvvlagG~E~mS 123 (392)
T COG0183 105 AIASGEA--DVVLAGGVEKMS 123 (392)
T ss_pred HHHCCCC--CEEEEEeeeecc
Confidence 9999976 999999999998
No 131
>PF02797 Chal_sti_synt_C: Chalcone and stilbene synthases, C-terminal domain; InterPro: IPR012328 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2.3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyze the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group []. This domain of chalcone synthase is reported to be structurally similar to domains in thiolase and beta-ketoacyl synthase. The differences in activity are accounted for by differences in the N-terminal domain. ; GO: 0016746 transferase activity, transferring acyl groups; PDB: 3OV2_A 3OV3_B 1Z1F_A 1Z1E_A 3ALE_C 3OIT_A 2H84_A 1TEE_D 1TED_A 2P0U_A ....
Probab=97.72 E-value=2.9e-05 Score=63.06 Aligned_cols=50 Identities=14% Similarity=0.056 Sum_probs=41.1
Q ss_pred HhhcCCCCCCCCcEEecCCCChhHHHHHHHhccchhhhhcCCCcc---ccccC
Q 023511 230 KLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNARLPS---FLHLS 279 (281)
Q Consensus 230 ~l~~~g~~~~did~~i~Hq~n~~i~~~~~~~lg~~~~~~~~~~~~---~~~~~ 279 (281)
.|++.|++..|+++|++|+++++|++.+.+.|++.+.+..+||++ |||+|
T Consensus 49 ~L~~~g~~~~~~~~wavHPGG~~ILd~v~~~L~L~~~~l~~Sr~vLr~yGNmS 101 (151)
T PF02797_consen 49 LLARHGLSDWDILFWAVHPGGRKILDAVEEALGLSPEQLRASREVLREYGNMS 101 (151)
T ss_dssp HHHGGTCCSGGGSEEEEE-SSHHHHHHHHHHHTS-GGGGHHHHHHHHHH-B-G
T ss_pred HHhhhcccccccceeeecCChHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC
Confidence 467789987788899999999999999999999999999999765 67765
No 132
>KOG1390 consensus Acetyl-CoA acetyltransferase [Lipid transport and metabolism]
Probab=97.46 E-value=0.00027 Score=63.12 Aligned_cols=96 Identities=10% Similarity=0.149 Sum_probs=74.1
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCC-CceeeecccccchHHHHHHHHH
Q 023511 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNT-DIEGVDSTNACYGGTAALFNCV 128 (281)
Q Consensus 50 ~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~-~~~~~di~~~C~g~~~aL~~A~ 128 (281)
.-++.+|+.-|++.+|++++++|+|++-+|++..-.-..--.++-. -.|+. |.+ ++.|.-++--|++++-|+.+|.
T Consensus 27 sl~A~~Lgsvaikaalera~v~~~~v~eVi~GnVl~AnlGQapaRQ--aalgA-Glp~sv~~tTvNkvCaSgmKAv~laa 103 (396)
T KOG1390|consen 27 SLTATELGSVAIKAALERAVVPPSDVAEVIFGNVLSANLGQAPARQ--AALGA-GLPYSVPATTVNKVCASGMKAVILAA 103 (396)
T ss_pred cCchhhHHHHHHHHHHHhcCCCHHHhhhhhhccccccccCcchHHH--HHhhc-CCCcceeeEeehhhhhhhHHHHHHHH
Confidence 3468999999999999999999999999998875433322233332 22322 233 6889999999999999999999
Q ss_pred HHHHhCCCCCCeEEEEEeeccc
Q 023511 129 NWVESSSWDGRYGLVVCTDSAV 150 (281)
Q Consensus 129 ~~l~~g~~~~~~aLVV~~e~~s 150 (281)
.-|+.|.+ +.++.-+-|.+|
T Consensus 104 QsI~~G~~--divVaGGmEsMS 123 (396)
T KOG1390|consen 104 QSIQTGHA--DIVVAGGMESMS 123 (396)
T ss_pred HHHhcCCc--cEEEecccchhc
Confidence 99999954 777777778887
No 133
>KOG1391 consensus Acetyl-CoA acetyltransferase [Lipid transport and metabolism]
Probab=96.90 E-value=0.0012 Score=57.42 Aligned_cols=96 Identities=11% Similarity=0.119 Sum_probs=73.4
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhh-cCC-CCceeeecccccchHHHHHHHH
Q 023511 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEK-FGN-TDIEGVDSTNACYGGTAALFNC 127 (281)
Q Consensus 50 ~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~-~g~-~~~~~~di~~~C~g~~~aL~~A 127 (281)
+-++.||..-|++.+|..+++.++.||.+|+++.-.. .+...|+.+..++ .|. .+.+++-++-=|.++.+++..+
T Consensus 25 g~~aTdL~~~AakAAL~aa~v~~e~VD~VI~GNV~aS---SsDgIYl~RHvGL~~GvP~e~pALtiNRLCGSGFQsiVNg 101 (396)
T KOG1391|consen 25 GLSATDLGVVAAKAALKAANVGAEAVDHVIMGNVLAS---SSDGIYLARHVGLRVGVPKETPALTINRLCGSGFQSIVNG 101 (396)
T ss_pred CcchhhHHHHHHHHHHhhcCCChhhcceEEEeeeeec---cCCceEeeeccccccCCcCccCceeehhhhcccHHHHHhh
Confidence 4578999999999999999999999999997654111 1122233344443 232 3678999999999999999999
Q ss_pred HHHHHhCCCCCCeEEEEEeeccc
Q 023511 128 VNWVESSSWDGRYGLVVCTDSAV 150 (281)
Q Consensus 128 ~~~l~~g~~~~~~aLVV~~e~~s 150 (281)
..-+.-|.+ +.+|.=+.|.+|
T Consensus 102 aQ~I~vgea--~ivL~GGtEnMS 122 (396)
T KOG1391|consen 102 AQEICVGEA--EIVLCGGTENMS 122 (396)
T ss_pred HHHhhcCcc--eEEEecCccccc
Confidence 999999965 777776778887
No 134
>PF13723 Ketoacyl-synt_2: Beta-ketoacyl synthase, N-terminal domain
Probab=96.05 E-value=0.17 Score=43.59 Aligned_cols=116 Identities=16% Similarity=0.126 Sum_probs=77.8
Q ss_pred CHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCC---------------CCcc-hHHHHHHH----HhhcCCCCceee
Q 023511 52 DVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVID---------------KSKS-IKTFLMQI----FEKFGNTDIEGV 111 (281)
Q Consensus 52 ~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~---------------~~p~-~a~~i~~~----l~~~g~~~~~~~ 111 (281)
...-|++.++..++++. +++|.+|++|..++. ..|. ....||.. +...-.......
T Consensus 33 ~~~rla~~~a~~~~~~~----~~~d~~VfaS~~Gel~~t~~ll~~l~~~~~lSPT~Fs~SVHNA~aG~~sI~~~~~~~~t 108 (218)
T PF13723_consen 33 RLSRLALEAALECLAED----EQPDAIVFASRHGELERTFKLLEALAEEEELSPTAFSQSVHNAAAGYWSIATKNTGPNT 108 (218)
T ss_pred HHHHHHHHHHHHHHhcc----CCCCcEEEEeCCCcHHHHHHHHHHHHhCCCcCccchhhhhhhHHHHHHHHHhCCCCceE
Confidence 47789999999998652 578899999977652 2331 11122222 111111234566
Q ss_pred ecccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeeccc---ccCC-CCccccCcceEEEEEccCCC
Q 023511 112 DSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV---YAEG-PARPTGGAAAVVMLVGPDAP 174 (281)
Q Consensus 112 di~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s---~~~~-~~~~~fGDGAaA~ll~~~~~ 174 (281)
-+..+=.+|-.||..|..++..| . +.||||+.|... |... +......--|.|++|++.+.
T Consensus 109 al~a~~~sf~~aLleA~~~l~~~-~--~~VLlv~~De~~p~~y~~~~~~~~~~~~~A~al~L~~~~~ 172 (218)
T PF13723_consen 109 ALAAGEDSFEAALLEAAAQLAEG-A--EPVLLVCYDEPLPEPYQEFRPERDPPFPYALALVLSPGDS 172 (218)
T ss_pred EEecCcchHHHHHHHHHHHHHcC-C--CCEEEEEeCCCCChhhhhcccccCCCcCEEEEEEecCCCC
Confidence 67778889999999999999998 4 899999999865 3221 12334455788999987654
No 135
>KOG1392 consensus Acetyl-CoA acetyltransferase [Lipid transport and metabolism]
Probab=95.71 E-value=0.0074 Score=53.44 Aligned_cols=93 Identities=16% Similarity=0.116 Sum_probs=68.7
Q ss_pred CHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhh-cCC-CCceeeecccccchHHHHHHHHHH
Q 023511 52 DVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEK-FGN-TDIEGVDSTNACYGGTAALFNCVN 129 (281)
Q Consensus 52 ~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~-~g~-~~~~~~di~~~C~g~~~aL~~A~~ 129 (281)
-+-||+.+|.+.+|++..++.+.||.||++|.....-....+ +...+ .|. ..+++--+..+|.+.-.|+.+...
T Consensus 65 mphdlar~al~~ll~kt~lpke~~dyii~gtviqevktsnia----reaal~agfsdktpahtvtmacissn~amttgmg 140 (465)
T KOG1392|consen 65 MPHDLAREALKALLEKTKLPKEQLDYIICGTVIQEVKTSNIA----REAALLAGFSDKTPAHTVTMACISSNVAMTTGMG 140 (465)
T ss_pred chhHHHHHHHHHHHHhccCCHHHhceeeehhhHHHHhcchHH----HHHHHhcCCCCCCccceeeeehhccchhhhccce
Confidence 367899999999999999999999999999976554222222 22222 232 346778889999999999999999
Q ss_pred HHHhCCCCCCeEEEEEeeccc
Q 023511 130 WVESSSWDGRYGLVVCTDSAV 150 (281)
Q Consensus 130 ~l~~g~~~~~~aLVV~~e~~s 150 (281)
+|.+|.+ +.++-=+.|.+|
T Consensus 141 liatg~~--dvivaggvelms 159 (465)
T KOG1392|consen 141 LIATGNA--DVIVAGGVELMS 159 (465)
T ss_pred eEeeCCc--CEEEEcceeecc
Confidence 9999975 433333446665
No 136
>PRK06025 acetyl-CoA acetyltransferase; Provisional
Probab=95.57 E-value=0.0096 Score=56.23 Aligned_cols=42 Identities=12% Similarity=0.158 Sum_probs=37.9
Q ss_pred HhhcCCCCCCCCcEEecCCCChhHHHHHHHhccchhhhhcCC
Q 023511 230 KLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNAR 271 (281)
Q Consensus 230 ~l~~~g~~~~did~~i~Hq~n~~i~~~~~~~lg~~~~~~~~~ 271 (281)
+|+++|++++|||+|-+|+++..+.....+.+|+..+..+++
T Consensus 324 aL~~AGl~~~DID~~ei~eaFa~~~l~~~~~lg~~~~~vN~~ 365 (417)
T PRK06025 324 VLAKAGLTKDDIDLWEINEAFAVVAEKFIRDLDLDRDKVNVN 365 (417)
T ss_pred HHHHcCCCHHHCcEEEEchHHHHHHHHHHHHcCCChhhcccc
Confidence 477899999999999999999999999999999988776665
No 137
>KOG1389 consensus 3-oxoacyl CoA thiolase [Lipid transport and metabolism]
Probab=95.42 E-value=0.048 Score=48.93 Aligned_cols=96 Identities=16% Similarity=0.254 Sum_probs=73.7
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCC-ceeeecccccchHHHHHHHHH
Q 023511 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTD-IEGVDSTNACYGGTAALFNCV 128 (281)
Q Consensus 50 ~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~-~~~~di~~~C~g~~~aL~~A~ 128 (281)
+...-+|-..+.+..+++.+++|+.|+-|+++++-.+-.. ...+.+.... .|.+. ++..-++--|+++++|+....
T Consensus 58 dt~pDeLl~~vl~a~ie~t~~dp~~igdi~vG~vL~pg~g-a~e~R~a~~~--ag~P~tvpv~tvNRqCsSGLqaVadiA 134 (435)
T KOG1389|consen 58 DTRPDELLAAVLRAVIEKTNLDPSLIGDIVVGTVLAPGSG-ASECRMAAFY--AGFPETVPVRTVNRQCSSGLQAVADIA 134 (435)
T ss_pred cCChHHHHHHHHHHHHhhcCCCHHHhcceeeeeccCCCcc-hHHHHHHHHH--cCCCcccchhhhhhhhhhHHHHHHHHH
Confidence 4456789999999999999999999999999998554322 4444333322 24443 334446779999999999999
Q ss_pred HHHHhCCCCCCeEEEEEeeccc
Q 023511 129 NWVESSSWDGRYGLVVCTDSAV 150 (281)
Q Consensus 129 ~~l~~g~~~~~~aLVV~~e~~s 150 (281)
.-|++|.+ +--|-.+.|.++
T Consensus 135 ~~Ir~G~y--dIGla~GvESMt 154 (435)
T KOG1389|consen 135 AKIRAGFY--DIGLAAGVESMT 154 (435)
T ss_pred HHHhcCce--eeecccchhhhc
Confidence 99999987 888888888887
No 138
>PRK06147 3-oxoacyl-(acyl carrier protein) synthase; Validated
Probab=94.19 E-value=0.22 Score=46.03 Aligned_cols=93 Identities=13% Similarity=-0.055 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHcCCCcCCccEEEEec-ccCCCCCcchHHHHHHHHhhcCC-CCceee--eccc-ccchHHHHHHHHHH
Q 023511 55 SMSLTAVTNLLEKYKIDPKQIGRLEVGS-ETVIDKSKSIKTFLMQIFEKFGN-TDIEGV--DSTN-ACYGGTAALFNCVN 129 (281)
Q Consensus 55 ~la~~Aa~~aL~~a~l~~~dId~li~~s-~t~~~~~p~~a~~i~~~l~~~g~-~~~~~~--di~~-~C~g~~~aL~~A~~ 129 (281)
+=..+|.+++|+++|++|+|||.|+..- .++.. ...-..-+.+.++.... ..+... -++. +.+++...+..+..
T Consensus 234 ~gl~~ai~~AL~~agl~~~dId~v~ah~~gt~~~-d~~e~~A~~~~f~~~~~~~~~~~~k~~~Gh~~aAaG~~~~~~a~~ 312 (348)
T PRK06147 234 DGLTQAIRAALAEAGCGLEDMDYRIADLNGEQYR-FKEAALAEMRLFRVRKEFFDLWHPAECIGEIGAAIGPALLGVALA 312 (348)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEcCCCCCccc-hHHHHHHHHHHhhhccCCCceecchHhhcchHHHHHHHHHHHHHH
Confidence 3456899999999999999999998432 22221 11112223333332110 111111 1222 44455555556666
Q ss_pred HHHhCCCCCCeEEEEEeec
Q 023511 130 WVESSSWDGRYGLVVCTDS 148 (281)
Q Consensus 130 ~l~~g~~~~~~aLVV~~e~ 148 (281)
.++.|..|+.++||.+++-
T Consensus 313 ~~~~g~~~g~~~L~~s~~d 331 (348)
T PRK06147 313 ASRKGYGPGPNVLCHLSDD 331 (348)
T ss_pred HHHcCcCCCCcEEEEecCC
Confidence 7777765778899988754
No 139
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=94.07 E-value=0.08 Score=38.62 Aligned_cols=72 Identities=14% Similarity=0.082 Sum_probs=38.4
Q ss_pred HHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCceee-e---ccc-ccchHHHHHHHHHHHHHhCCC-CC
Q 023511 65 LEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGV-D---STN-ACYGGTAALFNCVNWVESSSW-DG 138 (281)
Q Consensus 65 L~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~-d---i~~-~C~g~~~aL~~A~~~l~~g~~-~~ 138 (281)
|+++|++++|||.+++...+. .....+.+.++. +.-..+ + +++ +|++-..+|..+.. .|.. ++
T Consensus 1 L~~~g~~~~did~~i~hq~~~-----~~~~~~~~~lgi---~~~~~~~~~~~~Gn~~sa~~~~~L~~~~~---~g~~~~G 69 (90)
T PF08541_consen 1 LERAGLSPDDIDHFIPHQASK-----KILDSIAKRLGI---PPERFPDNLAEYGNTGSASIPINLADALE---EGRIKPG 69 (90)
T ss_dssp HHHTT--GGGESEEEE-SSSH-----HHHHHHHHHHTS----GGGBE-THHHH-B-GGGHHHHHHHHHHH---TTSSCTT
T ss_pred CccccCCHHHCCEEEeCCCCH-----HHHHHHHHHcCC---cHHHHHHHHhccCcchhhhHHHHHHHHHH---cCCCCCC
Confidence 789999999999999865322 222224444443 322222 2 333 66666666655544 3311 55
Q ss_pred CeEEEEEee
Q 023511 139 RYGLVVCTD 147 (281)
Q Consensus 139 ~~aLVV~~e 147 (281)
+++|+++.-
T Consensus 70 d~vl~~~~G 78 (90)
T PF08541_consen 70 DRVLLVGFG 78 (90)
T ss_dssp EEEEEEEEE
T ss_pred CEEEEEEEE
Confidence 888888753
No 140
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=94.02 E-value=0.17 Score=52.95 Aligned_cols=179 Identities=12% Similarity=0.149 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcc-----EEEEecc--cCCC--CCcc----------hHHHHHHHHhh-cCCCCceeee
Q 023511 53 VISMSLTAVTNLLEKYKIDPKQIG-----RLEVGSE--TVID--KSKS----------IKTFLMQIFEK-FGNTDIEGVD 112 (281)
Q Consensus 53 ~~~la~~Aa~~aL~~a~l~~~dId-----~li~~s~--t~~~--~~p~----------~a~~i~~~l~~-~g~~~~~~~d 112 (281)
...|-.+|.-+|+-++|++|.++. ..+-.|. |... ..|. ..++...++.. ... .-+.|.
T Consensus 87 q~RlLLE~t~EAivDaGiNP~~LRGs~tGv~vg~s~seTs~~~~~dp~t~~Gy~mtgc~raMfaNRiSytFDf-qGPS~s 165 (2376)
T KOG1202|consen 87 QLRLLLEATWEAIVDAGINPDDLRGSRTGVFVGVSGSETSGALSQDPDTVNGYSMTGCVRAMFANRISYTFDF-QGPSFS 165 (2376)
T ss_pred HHHHHHHHHHHHHHhCCCChhhcCcccceeEEeecCccccccccCCCccccceeecccHHHHhhcceeEEEec-cCCchh
Confidence 678999999999999999998875 3332221 1111 0111 11111111110 000 012344
Q ss_pred cccccchHHHHHHHHHHHHHhCCCCCCeEEEEEeeccc-------c------cCC---------CCccccCcceEEEEEc
Q 023511 113 STNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAV-------Y------AEG---------PARPTGGAAAVVMLVG 170 (281)
Q Consensus 113 i~~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s-------~------~~~---------~~~~~fGDGAaA~ll~ 170 (281)
+..+|++.+.||+.|.+-++.|++ +++||-++...- | .+. ...+.=.||.+|++|.
T Consensus 166 ~DtacsSsl~al~~a~~~~r~gqc--d~AiVaG~~liLkPt~slQFlRLgmls~dGsCkaFDeagnGY~Rseg~~avllq 243 (2376)
T KOG1202|consen 166 VDTACSSSLMALQNAFQDIRSGQC--DAAIVAGANLILKPTTSLQFLRLGMLSPDGSCKAFDEAGNGYCRSEGVVAVLLQ 243 (2376)
T ss_pred hhhhhHHHHHHHHHHHHhhhccCC--chhhhcccceEeccchhhHHHHhcCcCCCCcccchhccCCceeecCceEEEEEe
Confidence 556999999999999999999987 899988876421 1 111 1356678999999999
Q ss_pred cCCCc-ccccccc--ccccCCcccccccCCCCcccCCCCcccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcEEecC
Q 023511 171 PDAPV-AFESKLR--GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFH 247 (281)
Q Consensus 171 ~~~~~-~i~~~~~--~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~did~~i~H 247 (281)
+.... ++..+.+ ++.++ .|... |-.||. |+. ....+ ++ ...++|+.++++-|+=-|
T Consensus 244 rk~~ArRvYAtilnartNTD---GfKEq--GvTfP~--G~~----Q~qLi----~e------~Yse~Gl~P~sv~YvEAH 302 (2376)
T KOG1202|consen 244 RKSLARRVYATILNARTNTD---GFKEQ--GVTFPS--GDM----QEQLI----RE------TYSEAGLNPESVVYVEAH 302 (2376)
T ss_pred hhHHHHHHHHHhhccccCCC---chhhc--CccCCC--cHH----HHHHH----HH------HHHhcCCCcccEEEEEec
Confidence 86532 2222111 12221 12111 223332 111 11122 22 235689999999999999
Q ss_pred CCChhHHH
Q 023511 248 SPYNKLVQ 255 (281)
Q Consensus 248 q~n~~i~~ 255 (281)
--+.++-+
T Consensus 303 GtGTkVGD 310 (2376)
T KOG1202|consen 303 GTGTKVGD 310 (2376)
T ss_pred cCCCCCCC
Confidence 87665533
No 141
>PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=93.73 E-value=0.26 Score=46.01 Aligned_cols=89 Identities=15% Similarity=0.199 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhh--cCCC--Cc-eeee-ccc-ccchHHHHHHH
Q 023511 54 ISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEK--FGNT--DI-EGVD-STN-ACYGGTAALFN 126 (281)
Q Consensus 54 ~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~--~g~~--~~-~~~d-i~~-~C~g~~~aL~~ 126 (281)
.+...++.+++|+++|++++|||.++....+ +..--.+.+.|+. +|.+ .+ ..++ ++| +|++...+|..
T Consensus 271 ~~~~~~~i~~~L~~~gl~~~DId~~v~Hq~n-----~~~~~~v~~~l~~~~~gl~~~k~~~~~~~~GNt~sAsipi~L~~ 345 (378)
T PRK06816 271 VVYTIKPLLELVDKRNLDPDDIDYFLPHYSS-----EYFREKIVELLAKAGFMIPEEKWFTNLATVGNTGSASIYIMLDE 345 (378)
T ss_pred HHHHHHHHHHHHHHcCCChhhCCEEeeCccc-----HHHHHHHHHHHHhccCCCChhheEEeccccccccchHHHHHHHH
Confidence 3455788899999999999999999965322 2222233444421 1322 12 2333 555 88888888876
Q ss_pred HHHHHHhCCC-CCCeEEEEEeeccc
Q 023511 127 CVNWVESSSW-DGRYGLVVCTDSAV 150 (281)
Q Consensus 127 A~~~l~~g~~-~~~~aLVV~~e~~s 150 (281)
+. +.|.. +++++++++++...
T Consensus 346 a~---~~g~~~~Gd~vl~~~~~s~~ 367 (378)
T PRK06816 346 LL---NSGRLKPGQKILCFVPESGR 367 (378)
T ss_pred HH---HcCCCCCCCEEEEEEecccc
Confidence 63 33321 56888888777543
No 142
>TIGR00748 HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase, putative. Thus, although there is no experimental evidence supporting this name, the bioinformatics-based conclusion appears to be sound.
Probab=93.19 E-value=0.21 Score=46.03 Aligned_cols=81 Identities=19% Similarity=0.210 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCC--ce-ee---eccc-ccchHHHHHH
Q 023511 53 VISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTD--IE-GV---DSTN-ACYGGTAALF 125 (281)
Q Consensus 53 ~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~--~~-~~---di~~-~C~g~~~aL~ 125 (281)
....+.++++++|+++|++++|||.+++....+. ++....+.+|.+. +. .+ +++| ++++...+|.
T Consensus 206 ~~~~~~~~~~~~L~~~gl~~~did~~i~Hq~~~~--------~~~~~~~~lgl~~ek~~~~~~~~~~GNt~sAsipl~L~ 277 (345)
T TIGR00748 206 YFHHVVTAAKGLMEKLGLTPEDFDYAVFHQPNGK--------FYLVAARMLGFPKEQVKPGLLTPRIGNTYSGATPVGLS 277 (345)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHcCEEEeCCCChH--------HHHHHHHHcCCCHHHeeccccccccCchhhhHHHHHHH
Confidence 5666779999999999999999999997532211 2223334444331 21 12 5665 8888888888
Q ss_pred HHHHHHHhCCCCCCeEEEEE
Q 023511 126 NCVNWVESSSWDGRYGLVVC 145 (281)
Q Consensus 126 ~A~~~l~~g~~~~~~aLVV~ 145 (281)
.+...++ +++++|+++
T Consensus 278 ~~~~~~~----~Gd~vll~~ 293 (345)
T TIGR00748 278 AVLDIAE----PGDRILAVS 293 (345)
T ss_pred HHHHhcC----CCCEEEEEE
Confidence 7765332 457777754
No 143
>PRK06205 acetyl-CoA acetyltransferase; Provisional
Probab=93.03 E-value=0.61 Score=44.00 Aligned_cols=59 Identities=12% Similarity=0.003 Sum_probs=36.3
Q ss_pred ccchhHHHhhhCCCCceeeeecCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEEE
Q 023511 18 CVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEV 80 (281)
Q Consensus 18 ~v~~~~~~~~~~~~~~~~~~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~ 80 (281)
++..++.++.++.++.....|.+... .. +.... .-...|+++||+++|++|+|||++-+
T Consensus 265 vl~se~~A~~~~~~p~~~i~g~~~~~--~~-~~~~~-~~~~~a~~~al~~Agl~~~Did~~ei 323 (404)
T PRK06205 265 LVTTEDKAEELGLRPLARLVSWAVAG--VE-PSRMG-IGPVPATEKALARAGLTLDDIDLIEL 323 (404)
T ss_pred EEecHHHHHHCCCCceEEEEEEEEec--cC-Ccccc-ccHHHHHHHHHHHcCCCHHHCCEeee
Confidence 45566666666655532223444432 11 11111 23468999999999999999999874
No 144
>PRK09052 acetyl-CoA acetyltransferase; Provisional
Probab=91.89 E-value=1.8 Score=40.80 Aligned_cols=56 Identities=7% Similarity=0.014 Sum_probs=34.7
Q ss_pred cchhHHHhhhCCCCc-eeeeecCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEE
Q 023511 19 VQQEALEAHDGASKG-KYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLE 79 (281)
Q Consensus 19 v~~~~~~~~~~~~~~-~~~~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li 79 (281)
+..++.++..+.++- ++. +++... .. +.... .-...|+++||+++|++|+|||++-
T Consensus 265 l~se~~a~~~g~~~~a~i~-g~~~~~--~~-~~~~~-~~~~~A~~~al~~Agi~~~did~~e 321 (399)
T PRK09052 265 LVSEKALKQFNLTPLARFV-SFAVAG--VP-PEIMG-IGPIEAIPAALKQAGLKQDDLDWIE 321 (399)
T ss_pred EecHHHHHHCCCCeeEEEE-EEEEec--cC-CCccc-hhHHHHHHHHHHHcCCCHHHcCEEE
Confidence 445555555554443 443 444332 11 12111 2447899999999999999999996
No 145
>PRK08257 acetyl-CoA acetyltransferase; Validated
Probab=91.63 E-value=1 Score=43.67 Aligned_cols=120 Identities=15% Similarity=0.019 Sum_probs=63.8
Q ss_pred ccchhHHHhhhCCCCc-eee-eecCcee--eeeCC-CCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcch
Q 023511 18 CVQQEALEAHDGASKG-KYT-IGLGQEC--MAFCS-EVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSI 92 (281)
Q Consensus 18 ~v~~~~~~~~~~~~~~-~~~-~gi~~r~--~~~~~-~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~ 92 (281)
.+++++.++.++.+++ ++. .|.+..+ ..+.. ++-........|+++|++++|++++|||++=+.+|.+. .
T Consensus 250 il~S~e~A~~l~~~~~~~V~i~g~a~~~~~~~~~~r~~~~~~~~~~~aa~~a~~~AGi~~~Did~~elydcF~~-----~ 324 (498)
T PRK08257 250 LLTSVAKARRLGVPEDRWVYLHGGADAHDPYDILERPDLHRSPAIRAAGRRALALAGLGIDDIDAFDLYSCFPS-----A 324 (498)
T ss_pred EEeeHHHHHhcCCCCCceEEEEEEEEeeCccccccccccccChHHHHHHHHHHHHhCCCHHHCCEEEeccCCHH-----H
Confidence 4677777777776533 332 3333322 11111 11122334457999999999999999999987766332 2
Q ss_pred HHHHHHHHhhcCCCCceeeeccccc-----ch---HHHHHHHHHHHHHhCCCCCCeEEEEE
Q 023511 93 KTFLMQIFEKFGNTDIEGVDSTNAC-----YG---GTAALFNCVNWVESSSWDGRYGLVVC 145 (281)
Q Consensus 93 a~~i~~~l~~~g~~~~~~~di~~~C-----~g---~~~aL~~A~~~l~~g~~~~~~aLVV~ 145 (281)
.-+..+.||+.+. +-..+.+++|. .+ ++..+..+...|+.. +.+++|+.+
T Consensus 325 ~~~~~E~LGl~~~-g~~pvN~sGGl~s~G~P~~a~g~~~i~E~v~QLRg~--~~~~gLv~~ 382 (498)
T PRK08257 325 VQVAARELGLDLD-DPRPLTVTGGLPFFGGPGNNYVTHAIAEMVERLRAN--PGRRGLVTA 382 (498)
T ss_pred HHHHHHHcCcCCC-CCCCcCCCcChhhcCCchhhHHHHHHHHHHHHHhhc--CCCEEEEEC
Confidence 2222255554421 11133443322 22 344444455556544 347777754
No 146
>cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction. Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units).
Probab=91.57 E-value=1.2 Score=40.26 Aligned_cols=81 Identities=12% Similarity=-0.063 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCC-ceeeeccc-ccchHHHHHHHHHHHH
Q 023511 54 ISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTD-IEGVDSTN-ACYGGTAALFNCVNWV 131 (281)
Q Consensus 54 ~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~-~~~~di~~-~C~g~~~aL~~A~~~l 131 (281)
.+...++++++|+++|++++|||.++.....................+.....- ...-.+++ ++++++..|..+...+
T Consensus 204 ~~~~~~~i~~al~~agl~~~did~~~~h~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~G~~~aas~~~~l~~~~~~~ 283 (332)
T cd00825 204 AEGLARAAKEALAVAGLTVWDIDYLVAHGTGTPIGDVKELKLLRSEFGDKSPAVSATKAMTGNLSSAAVVLAVDEAVLML 283 (332)
T ss_pred HHHHHHHHHHHHHHcCCCHhHCCEEEccCCCCCCCCHHHHHHHHHHhCCCCceeECCCcccccchhHhHHHHHHHHHHHH
Confidence 455668999999999999999999997654433322222211111111000000 01123444 6777777777777767
Q ss_pred HhC
Q 023511 132 ESS 134 (281)
Q Consensus 132 ~~g 134 (281)
+.+
T Consensus 284 ~~~ 286 (332)
T cd00825 284 EHG 286 (332)
T ss_pred hcC
Confidence 655
No 147
>PRK08242 acetyl-CoA acetyltransferase; Validated
Probab=91.03 E-value=1.8 Score=40.86 Aligned_cols=129 Identities=12% Similarity=0.092 Sum_probs=66.5
Q ss_pred ccchhHHHhhhCCC-CceeeeecCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHH
Q 023511 18 CVQQEALEAHDGAS-KGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFL 96 (281)
Q Consensus 18 ~v~~~~~~~~~~~~-~~~~~~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i 96 (281)
++..++.++.++.. ..+|. |.+... .. +.. ...-...|+++||+++|++++|||++=+. +. .+...-..
T Consensus 267 vl~s~e~A~~~g~~p~a~I~-g~~~~~--~~-~~~-~~~~~~~a~~~al~~AGl~~~DID~~ei~----da-Fa~~~l~~ 336 (402)
T PRK08242 267 LIGSEEAGKALGLKPRARIV-ATATIG--SD-PTI-MLTGPVPATRKALAKAGLTVDDIDLFELN----EA-FASVVLRF 336 (402)
T ss_pred EEecHHHHHHcCCCCcEEEE-EEEEec--CC-chh-hcccHHHHHHHHHHHcCCCHHHCCEEEec----ch-hhHHHHHH
Confidence 46677777777754 34554 333322 11 111 11112579999999999999999998752 21 22222323
Q ss_pred HHHHhhcCCC-Cce--eeecc--cccchHHHHHHHHHHHHHhCCCCCCeEEEEEeecccccCCCCccccCcceEEEEEcc
Q 023511 97 MQIFEKFGNT-DIE--GVDST--NACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGP 171 (281)
Q Consensus 97 ~~~l~~~g~~-~~~--~~di~--~~C~g~~~aL~~A~~~l~~g~~~~~~aLVV~~e~~s~~~~~~~~~fGDGAaA~ll~~ 171 (281)
.+.++....+ |+. ..-++ .|++|....+..+..+-+.+ +++.|+. .+.-|-.+.|+||++
T Consensus 337 ~e~lG~~~~~vN~~GG~la~GHP~GAsG~~~~~~l~~~L~~~~---~~~g~~~------------~c~ggG~g~a~~~e~ 401 (402)
T PRK08242 337 MQALDIPHDKVNVNGGAIAMGHPLGATGAMILGTVLDELERRG---KRTALIT------------LCVGGGMGIATIIER 401 (402)
T ss_pred HHHhCCCCcCCCcCCCHHhcCCcHHHHHHHHHHHHHHHHHhcC---CCeEEEE------------EcccCCceeEEEEEe
Confidence 3444432110 110 11122 25556665566666655443 2566552 233345556666654
No 148
>PRK06690 acetyl-CoA acetyltransferase; Provisional
Probab=91.01 E-value=0.15 Score=47.35 Aligned_cols=42 Identities=17% Similarity=0.202 Sum_probs=37.9
Q ss_pred HhhcCCCCCCCCcEEecCCCChhHHHHHHHhccchhhhhcCC
Q 023511 230 KLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNAR 271 (281)
Q Consensus 230 ~l~~~g~~~~did~~i~Hq~n~~i~~~~~~~lg~~~~~~~~~ 271 (281)
+|+++|++++|||+|.+||++..+.....+.|||.+...+++
T Consensus 267 al~~Agl~~~Did~~ei~eafa~~~~~~~e~lgl~~~~vn~~ 308 (361)
T PRK06690 267 LLNEMNMKVEDIDYFEINEAFASKVVACAKELQIPYEKLNVN 308 (361)
T ss_pred HHHHcCCCHHHcCEeeecchhHHHHHHHHHhcCCCchhcccC
Confidence 478899999999999999999999999999999987766664
No 149
>PRK06366 acetyl-CoA acetyltransferase; Provisional
Probab=91.00 E-value=1 Score=42.18 Aligned_cols=113 Identities=13% Similarity=0.062 Sum_probs=63.1
Q ss_pred ccchhHHHhhhCCCCc-eeeeecCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHH
Q 023511 18 CVQQEALEAHDGASKG-KYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFL 96 (281)
Q Consensus 18 ~v~~~~~~~~~~~~~~-~~~~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i 96 (281)
.++.++.++.++.++- +|. +++... ..+ ++.......|++++|+++|++|+|||++=+. +. .....-+-
T Consensus 252 vl~See~A~~l~~~pv~~I~-g~~~~~--~~~--~~~~~~~~~A~~~al~~Agl~~~DiDv~Ei~----da-Fa~~~l~~ 321 (388)
T PRK06366 252 VMASEKAINEYGLKPIARIT-GYESAS--LDP--LDFVEAPIPATRKLLEKQNKSIDYYDLVEHN----EA-FSIASIIV 321 (388)
T ss_pred EEecHHHHHHcCCCcCEEEE-EEEEEe--cCH--HHhcccHHHHHHHHHHHcCCCHHHcceeecc----ch-hHHHHHHH
Confidence 4667777777765555 554 444443 111 1122234789999999999999999998643 22 12222222
Q ss_pred HHHHhhcCCC-Cc--eeeecc--cccchHHHHHHHHHHHHHhCCCCCCeEEE
Q 023511 97 MQIFEKFGNT-DI--EGVDST--NACYGGTAALFNCVNWVESSSWDGRYGLV 143 (281)
Q Consensus 97 ~~~l~~~g~~-~~--~~~di~--~~C~g~~~aL~~A~~~l~~g~~~~~~aLV 143 (281)
.+.|++-|.+ |. -++-.+ .||+|....+..+..+-+.| +++.|+
T Consensus 322 le~lgl~g~~vN~~GG~la~GHP~GatG~~~~~~l~~qL~~~~---~~~g~~ 370 (388)
T PRK06366 322 RDQLKIDNERFNVNGGAVAIGHPIGNSGSRIIVTLINALKTRH---MKTGLA 370 (388)
T ss_pred HHHhCCCCCccCCCCchhhhCCCcCCCHHHHHHHHHHHHHhcC---CCeEEE
Confidence 3444432211 11 012223 27777777777777776654 256554
No 150
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=90.99 E-value=0.36 Score=37.18 Aligned_cols=79 Identities=14% Similarity=0.154 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHcCCCcCCccEEEEecc-cCCCCCcchHHHHHHHHhhcC-CCCceeee----ccc-ccchHHHHHHHH
Q 023511 55 SMSLTAVTNLLEKYKIDPKQIGRLEVGSE-TVIDKSKSIKTFLMQIFEKFG-NTDIEGVD----STN-ACYGGTAALFNC 127 (281)
Q Consensus 55 ~la~~Aa~~aL~~a~l~~~dId~li~~s~-t~~~~~p~~a~~i~~~l~~~g-~~~~~~~d----i~~-~C~g~~~aL~~A 127 (281)
+-..++.+++|++++++|+|||+|....+ ++. .-+.-..-+.+.++... ...++.-. ++. ..++++..|..+
T Consensus 25 ~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~-~D~~E~~ai~~~~~~~~~~~~~~v~s~K~~~Gh~~~asG~~~l~~~ 103 (119)
T PF02801_consen 25 AALARAIRRALADAGISPEDIDYIEAHGTGTPL-GDAAEAEAIARVFGDSARQQPVPVGSVKSNIGHTEAASGLLSLAKA 103 (119)
T ss_dssp HHHHHHHHHHHHHHTS-GGGEEEEE----SSHH-HHHHHHHHHHHHHGGGGGTSTSEEE-THHHH-B-GGGHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccccceeeeeecccccc-chhhhhhhhhhhhcccccccccceeccccccccccccchHHHHHHH
Confidence 34478899999999999999999984432 322 12344444556565432 11122222 232 667777777777
Q ss_pred HHHHHhC
Q 023511 128 VNWVESS 134 (281)
Q Consensus 128 ~~~l~~g 134 (281)
..+++.+
T Consensus 104 ~l~l~~~ 110 (119)
T PF02801_consen 104 LLALEHG 110 (119)
T ss_dssp HHHHHHT
T ss_pred HHHHhcC
Confidence 7777765
No 151
>PRK07661 acetyl-CoA acetyltransferase; Provisional
Probab=90.69 E-value=2.5 Score=39.75 Aligned_cols=80 Identities=14% Similarity=0.200 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCC-Cce--eeecc--cccchHHHHHHHHHHH
Q 023511 56 MSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNT-DIE--GVDST--NACYGGTAALFNCVNW 130 (281)
Q Consensus 56 la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~-~~~--~~di~--~~C~g~~~aL~~A~~~ 130 (281)
-...|+++||+++|++|+|||++-+. +. .+...-...+.++....+ |.. ..-.+ .|++|....+..+..+
T Consensus 290 ~~~~a~~~al~~agl~~~did~~ei~----d~-f~~~~l~~~e~lg~~~~~vN~~GG~~a~Ghp~gasG~~~~~el~~qL 364 (391)
T PRK07661 290 GPIAAIPKALKLAGLELSDIGLFELN----EA-FASQSIQVIRELGLDEEKVNVNGGAIALGHPLGCTGAKLTLSLIHEM 364 (391)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEeC----CH-HHHHHHHHHHHcCCCCCCCCCCCChHHhCCcHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999732 21 122222112334331100 111 11122 2666666666666666
Q ss_pred HHhCCCCCCeEEE
Q 023511 131 VESSSWDGRYGLV 143 (281)
Q Consensus 131 l~~g~~~~~~aLV 143 (281)
-+.+ +++.|+
T Consensus 365 ~~~~---~~~g~~ 374 (391)
T PRK07661 365 KRRN---EQFGIV 374 (391)
T ss_pred HhcC---CCeEEE
Confidence 6554 256554
No 152
>PRK07851 acetyl-CoA acetyltransferase; Provisional
Probab=90.48 E-value=2.1 Score=40.45 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHcCCCcCCccEEE
Q 023511 57 SLTAVTNLLEKYKIDPKQIGRLE 79 (281)
Q Consensus 57 a~~Aa~~aL~~a~l~~~dId~li 79 (281)
...|+++||+++|++|+|||++=
T Consensus 305 ~~~a~~~al~~Agi~~~did~~e 327 (406)
T PRK07851 305 PVEASKQALARAGMSIDDIDLVE 327 (406)
T ss_pred HHHHHHHHHHHhCCCHHHCCeeh
Confidence 46899999999999999999983
No 153
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=90.34 E-value=3.2 Score=35.73 Aligned_cols=77 Identities=14% Similarity=-0.014 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhc--CCC----Cceeeeccc-ccchHHHHHH
Q 023511 53 VISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKF--GNT----DIEGVDSTN-ACYGGTAALF 125 (281)
Q Consensus 53 ~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~--g~~----~~~~~di~~-~C~g~~~aL~ 125 (281)
..+...++++++|+++|++++|||.++............. ..++.. +.. ....-.+++ +|++++..|.
T Consensus 143 ~~~~~~~~i~~~l~~ag~~~~did~~~~h~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~G~~~~as~~~~l~ 217 (254)
T cd00327 143 SGEGLARAARKALEGAGLTPSDIDYVEAHGTGTPIGDAVE-----LALGLDPDGVRSPAVSATLIMTGHPLGAAGLAILD 217 (254)
T ss_pred ChHHHHHHHHHHHHHcCCCHHHCCEEEccCCcCccccHHH-----HHHHHHHhCCCCCceeccccccccchHHHHHHHHH
Confidence 4567788999999999999999999986544333222221 222221 111 111123444 6666667777
Q ss_pred HHHHHHHhC
Q 023511 126 NCVNWVESS 134 (281)
Q Consensus 126 ~A~~~l~~g 134 (281)
.+...++.+
T Consensus 218 ~~~~~~~~~ 226 (254)
T cd00327 218 ELLLMLEHE 226 (254)
T ss_pred HHHHHHhCC
Confidence 666666654
No 154
>PF02803 Thiolase_C: Thiolase, C-terminal domain; InterPro: IPR020617 Two different types of thiolase [, , ] are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2.3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008152 metabolic process; PDB: 2WUA_B 4E1L_B 3SVK_A 1WDK_D 1WDM_D 2D3T_D 1WDL_C 2IB8_B 2IBU_A 2IB9_C ....
Probab=90.28 E-value=2.3 Score=33.23 Aligned_cols=80 Identities=14% Similarity=0.156 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCC-Cc--eeeecc--cccchHHHHHHHHHHH
Q 023511 56 MSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNT-DI--EGVDST--NACYGGTAALFNCVNW 130 (281)
Q Consensus 56 la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~-~~--~~~di~--~~C~g~~~aL~~A~~~ 130 (281)
-.+.|++++|+++|++++|||++=+.- . .-...-...+.++....+ |. -++-++ .||+|...-++.+..+
T Consensus 23 ~p~~A~~~al~~ag~~~~did~~Ei~E----a-FA~~~l~~~~~lg~~~~~vN~~GG~la~GHP~gasG~r~~~~l~~~L 97 (123)
T PF02803_consen 23 GPVPAARKALERAGLTPDDIDVIEINE----A-FAAQVLAFLEALGLDPEKVNPNGGALALGHPLGASGARLVVELAHQL 97 (123)
T ss_dssp THHHHHHHHHHHHT--GGGESEEEE------S-BHHHHHHHHHHHTTGGGGBSTT--HHHH-BHTTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCccccchhhccc----h-hhhHHHHhhccccccccccCcccccccccccccccccchhhhhHHHH
Confidence 346899999999999999999986532 1 122333334445442100 00 112222 2677777777777777
Q ss_pred HHhCCCCCCeEEE
Q 023511 131 VESSSWDGRYGLV 143 (281)
Q Consensus 131 l~~g~~~~~~aLV 143 (281)
-+.+. ++.|+
T Consensus 98 ~~~~~---~~gla 107 (123)
T PF02803_consen 98 RRRGG---RYGLA 107 (123)
T ss_dssp HHHTT---SEEEE
T ss_pred HHhch---hhhhH
Confidence 66542 56554
No 155
>PRK05656 acetyl-CoA acetyltransferase; Provisional
Probab=90.10 E-value=0.35 Score=45.43 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=33.9
Q ss_pred HhhcCCCCCCCCcEEecCCCChhHHHHHHHhccchhhhhcCC
Q 023511 230 KLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNAR 271 (281)
Q Consensus 230 ~l~~~g~~~~did~~i~Hq~n~~i~~~~~~~lg~~~~~~~~~ 271 (281)
+|+++|++++|||++-+|-...-......+.||+.....+++
T Consensus 300 al~~agl~~~dId~~e~~d~f~~~~~~~~e~lg~~~~~vn~~ 341 (393)
T PRK05656 300 CLDKAGWSLAELDLIEANEAFAAQSLAVGKELGWDAAKVNVN 341 (393)
T ss_pred HHHHcCCCHHHCCEEEecCccHHHHHHHHHHhCCCCccCCcC
Confidence 467799999999999999987777778889999876544443
No 156
>PRK04262 hypothetical protein; Provisional
Probab=89.97 E-value=0.81 Score=42.08 Aligned_cols=80 Identities=18% Similarity=0.178 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCC--Cce---ee-eccc-ccchHHHHHHH
Q 023511 54 ISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNT--DIE---GV-DSTN-ACYGGTAALFN 126 (281)
Q Consensus 54 ~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~--~~~---~~-di~~-~C~g~~~aL~~ 126 (281)
.....++.+++|+++|++++|||.+++... ...++....+.+|.+ ... .+ +++| ++++-..+|..
T Consensus 208 ~~~~~~~i~~~L~~~gl~~~dId~~v~Hq~--------n~~~~~~~~~~Lgl~~ek~~~~~~~~~~GNt~sAsi~~~L~~ 279 (347)
T PRK04262 208 FKHIISAAKGLMEKLGLKPSDYDYAVFHQP--------NGKFPLRVAKMLGFTKEQVKPGLLTPYIGNTYSGSALLGLAA 279 (347)
T ss_pred HHHHHHHHHHHHHHhCcCHHHhceeecCCC--------chHHHHHHHHHcCCCHHHhhccchhhhhCChHHHHHHHHHHH
Confidence 356778899999999999999999987521 112222333344432 222 12 3554 66677777766
Q ss_pred HHHHHHhCCCCCCeEEEEE
Q 023511 127 CVNWVESSSWDGRYGLVVC 145 (281)
Q Consensus 127 A~~~l~~g~~~~~~aLVV~ 145 (281)
+..- .. +++++|+++
T Consensus 280 ~~~~--~~--~Gd~vll~~ 294 (347)
T PRK04262 280 VLDV--AK--PGDRILVVS 294 (347)
T ss_pred HHHh--CC--CCCEEEEEe
Confidence 6542 22 457777753
No 157
>PRK07850 acetyl-CoA acetyltransferase; Provisional
Probab=89.97 E-value=4.3 Score=38.07 Aligned_cols=59 Identities=14% Similarity=0.066 Sum_probs=37.3
Q ss_pred ccchhHHHhhhCCCC-ceeeeecCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEe
Q 023511 18 CVQQEALEAHDGASK-GKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVG 81 (281)
Q Consensus 18 ~v~~~~~~~~~~~~~-~~~~~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~ 81 (281)
.+..++.++.++.++ -|+. +.+... ..+ .....-...|+++||+++|++|+|||++=+.
T Consensus 252 vl~see~A~~l~~~p~~~i~-g~~~~~---~~~-~~~~~~~~~a~~~al~~agl~~~did~~ei~ 311 (387)
T PRK07850 252 LWMDEDRARALGLRPRARIV-AQALVG---AEP-YYHLDGPVQATAKVLEKAGMKIGDIDLVEIN 311 (387)
T ss_pred EEecHHHHHHcCCCCcEEEE-EEEEec---cCc-hhhcchHHHHHHHHHHHcCCCHHHcCeeeec
Confidence 355666666666444 4443 333211 111 1223445789999999999999999999763
No 158
>CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional
Probab=89.88 E-value=0.66 Score=42.22 Aligned_cols=82 Identities=10% Similarity=0.095 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCc-eeee-ccc-ccchHHHHHHHHHHHHH
Q 023511 56 MSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDI-EGVD-STN-ACYGGTAALFNCVNWVE 132 (281)
Q Consensus 56 la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~-~~~d-i~~-~C~g~~~aL~~A~~~l~ 132 (281)
...++.+++|+++|++++|||++++.... +..-..+.+.|++.. .+. ..++ .+| +|++...+|..+ ++
T Consensus 227 ~~~~~i~~~L~~~g~~~~did~~~~hq~~-----~~~~~~~~~~lgl~~-~k~~~~l~~~Gn~~sasi~~~L~~~---~~ 297 (326)
T CHL00203 227 QVPAVIIKCLNALNISIDEVDWFILHQAN-----KRILEAIANRLSVPN-SKMITNLEKYGNTSAASIPLALDEA---IQ 297 (326)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEECCCC-----HHHHHHHHHHhCCCH-HHhhhHHHhhCcHHHHHHHHHHHHH---HH
Confidence 34557899999999999999999975432 122222445554432 112 1222 334 666666666555 34
Q ss_pred hCCC-CCCeEEEEEe
Q 023511 133 SSSW-DGRYGLVVCT 146 (281)
Q Consensus 133 ~g~~-~~~~aLVV~~ 146 (281)
.|.. +++++|+++.
T Consensus 298 ~g~~~~Gd~vll~~~ 312 (326)
T CHL00203 298 NNKIQPGQIIVLSGF 312 (326)
T ss_pred hCCCCCCCEEEEEEE
Confidence 4422 5678887763
No 159
>PRK12578 acetyl-CoA acetyltransferase; Provisional
Probab=89.76 E-value=0.91 Score=42.44 Aligned_cols=37 Identities=8% Similarity=0.134 Sum_probs=33.5
Q ss_pred HhhcCCCCCCCCcEEecCCCChhHHHHHHHhccchhh
Q 023511 230 KLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDF 266 (281)
Q Consensus 230 ~l~~~g~~~~did~~i~Hq~n~~i~~~~~~~lg~~~~ 266 (281)
+++++|++++|||++-+|-+...+.-..++.|||.+.
T Consensus 266 al~~Agi~~~DiD~~ei~d~ft~~~l~~le~lGl~~~ 302 (385)
T PRK12578 266 AYNMAKVTPNDIEVATVHDAFTIAEIMGYEDLGFTEK 302 (385)
T ss_pred HHHHcCCCHHHCCEEEecCcChHHHHHHHHHcCCCCC
Confidence 4677999999999999999999999999999998763
No 160
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=89.76 E-value=0.78 Score=42.63 Aligned_cols=86 Identities=13% Similarity=0.174 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcC-CCC-ceeee-ccc-ccchHHHHHHHHH
Q 023511 53 VISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFG-NTD-IEGVD-STN-ACYGGTAALFNCV 128 (281)
Q Consensus 53 ~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g-~~~-~~~~d-i~~-~C~g~~~aL~~A~ 128 (281)
..+...++.+++|+++|++++|||.+++.-.+.. -....+...++..- ... ...++ .+| +|++...+|..+.
T Consensus 269 ~~~~~~~~i~~~L~~~gl~~~dId~~~~Hq~~~~----~~d~~~~~llg~~~~~~~~~~~~~~~GNt~sasi~~~L~~~~ 344 (372)
T PRK07515 269 VCPMVAEHIVEHLAENGLTPADVKRFWLHQANIN----MNQLIGKKVLGRDATPEEAPVILDEYANTSSAGSIIAFHKHS 344 (372)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEECCCCHH----HHHHHHHHhccCCCChhhceEeHHhcCCchhhHHHHHHHHHh
Confidence 3445678999999999999999999997532221 11222222233211 111 12333 444 8888888888775
Q ss_pred HHHHhCCCCCCeEEEEEe
Q 023511 129 NWVESSSWDGRYGLVVCT 146 (281)
Q Consensus 129 ~~l~~g~~~~~~aLVV~~ 146 (281)
.-++ +++++|+++.
T Consensus 345 ~~~~----~Gd~vll~~~ 358 (372)
T PRK07515 345 DDLA----AGDLGVICSF 358 (372)
T ss_pred ccCC----CCCEEEEEEe
Confidence 4332 4578877763
No 161
>PRK13359 beta-ketoadipyl CoA thiolase; Provisional
Probab=89.63 E-value=1.9 Score=40.68 Aligned_cols=57 Identities=16% Similarity=0.145 Sum_probs=34.7
Q ss_pred ccchhHHHhhhCCCC-ceeeeecCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEE
Q 023511 18 CVQQEALEAHDGASK-GKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLE 79 (281)
Q Consensus 18 ~v~~~~~~~~~~~~~-~~~~~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li 79 (281)
.+..++.++..+.++ -+|. |.+... . ++.... .-...|++++|+++|++|+|||++-
T Consensus 263 vL~s~e~A~~~g~~~~a~I~-g~~~~~--~-~p~~~~-~~~~~A~~~al~~AGl~~~DID~ie 320 (400)
T PRK13359 263 LLASEAAARRHGLKPRARVL-GIATAG--V-EPRVMG-IGPAPATQKLLARLGMTLDQFDVIE 320 (400)
T ss_pred EEecHHHHHHCCCCccEEEE-EEEEec--C-CCCccc-hhHHHHHHHHHHHhCCCHHHcCcCc
Confidence 345555555555443 3443 333332 1 122111 2347899999999999999999987
No 162
>PRK07937 lipid-transfer protein; Provisional
Probab=89.35 E-value=2.8 Score=38.82 Aligned_cols=59 Identities=8% Similarity=-0.050 Sum_probs=32.5
Q ss_pred ccchhHHHhhhCCCCceeeeecCce--eeeeCCCCCCHHHHHHHHHHHHHHH-cCCCcCCccEEEEe
Q 023511 18 CVQQEALEAHDGASKGKYTIGLGQE--CMAFCSEVEDVISMSLTAVTNLLEK-YKIDPKQIGRLEVG 81 (281)
Q Consensus 18 ~v~~~~~~~~~~~~~~~~~~gi~~r--~~~~~~~~e~~~~la~~Aa~~aL~~-a~l~~~dId~li~~ 81 (281)
+++.++.++.++.++-+|. |++.. ...+...+... ..++++++++ +|++|+|||++=+.
T Consensus 212 vl~s~~~A~~l~~~pv~I~-g~~~~~~~~~~~~~d~~~----~~~~~~a~~~aAgi~~~diD~~Ei~ 273 (352)
T PRK07937 212 VLAAGDRARELRERPAWIT-GIEHRIESPSLGARDLTR----SPSTALAAEAATGGDAGGVDVAELH 273 (352)
T ss_pred EEecHHHHHHcCCCcEEEE-EEEEeeCCcccccccccc----HHHHHHHHHHhcCCCHHHCCEEEEe
Confidence 4666777777665565554 33332 21121122222 2334445555 59999999999654
No 163
>PRK06840 hypothetical protein; Validated
Probab=88.95 E-value=2.9 Score=38.19 Aligned_cols=82 Identities=17% Similarity=0.152 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCceee-eccc-ccchHHHHHHHHHHHHHh
Q 023511 56 MSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGV-DSTN-ACYGGTAALFNCVNWVES 133 (281)
Q Consensus 56 la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~-di~~-~C~g~~~aL~~A~~~l~~ 133 (281)
...++.+++|+++|++++|||.++..... +..-..+.+.|+... .....+ ++++ +|++...+|..+ ++.
T Consensus 238 ~~~~~i~~~L~~~gl~~~did~~~~h~~~-----~~~~~~~~~~Lgl~~-~~~~~~~~~Gn~~sas~~~~L~~~---~~~ 308 (339)
T PRK06840 238 NFLKVIREALRKSGYTPKDIDYLAILHMK-----RSAHIALLEGLGLTE-EQAIYLDEYGHLGQLDQILSLHLA---LEQ 308 (339)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEECCcC-----HHHHHHHHHHcCCCH-HHeEeHHhccchhhhhHHHHHHHH---HHc
Confidence 45688999999999999999998864321 222222334444321 122222 2444 555555555543 445
Q ss_pred CCC-CCCeEEEEEe
Q 023511 134 SSW-DGRYGLVVCT 146 (281)
Q Consensus 134 g~~-~~~~aLVV~~ 146 (281)
+.. +++++|+++.
T Consensus 309 ~~~~~Gd~ill~~~ 322 (339)
T PRK06840 309 GKLKDGDLVVLVSA 322 (339)
T ss_pred CCCCCCCEEEEEEE
Confidence 421 5678888764
No 164
>PRK09050 beta-ketoadipyl CoA thiolase; Validated
Probab=88.46 E-value=2.9 Score=39.39 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHcCCCcCCccEEE
Q 023511 57 SLTAVTNLLEKYKIDPKQIGRLE 79 (281)
Q Consensus 57 a~~Aa~~aL~~a~l~~~dId~li 79 (281)
...|++++|+++|++|+|||++-
T Consensus 299 ~~~a~~~al~~Agl~~~DId~~e 321 (401)
T PRK09050 299 PAPATRKLLARLGLTIDQFDVIE 321 (401)
T ss_pred HHHHHHHHHHHcCCCHHHCCccc
Confidence 46899999999999999999986
No 165
>PLN02287 3-ketoacyl-CoA thiolase
Probab=88.43 E-value=0.56 Score=44.94 Aligned_cols=42 Identities=12% Similarity=0.190 Sum_probs=34.7
Q ss_pred HhhcCCCCCCCCcEEecCCCChhHHHHHHHhccchhhhhcCC
Q 023511 230 KLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNAR 271 (281)
Q Consensus 230 ~l~~~g~~~~did~~i~Hq~n~~i~~~~~~~lg~~~~~~~~~ 271 (281)
+|+++|++++|||++=+|-+.....-...+.|||.+...+++
T Consensus 340 al~~Agl~~~DID~~Ei~daFa~~~l~~~e~lG~~~~pvN~s 381 (452)
T PLN02287 340 AVKAAGLELDDIDLFEINEAFASQFVYCCKKLGLDPEKVNVN 381 (452)
T ss_pred HHHHcCCCHHHCCEEEecchHHHHHHHHHHHcCCCccccCCC
Confidence 467899999999999999887777667789999987666655
No 166
>PF02803 Thiolase_C: Thiolase, C-terminal domain; InterPro: IPR020617 Two different types of thiolase [, , ] are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2.3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008152 metabolic process; PDB: 2WUA_B 4E1L_B 3SVK_A 1WDK_D 1WDM_D 2D3T_D 1WDL_C 2IB8_B 2IBU_A 2IB9_C ....
Probab=88.19 E-value=0.45 Score=37.21 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=34.2
Q ss_pred HhhcCCCCCCCCcEEecCCCChhHHHHHHHhccchhhhhcCC
Q 023511 230 KLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNAR 271 (281)
Q Consensus 230 ~l~~~g~~~~did~~i~Hq~n~~i~~~~~~~lg~~~~~~~~~ 271 (281)
+|+++|++++|||.|=+|-+..-..-...+.|++.+..+|+.
T Consensus 31 al~~ag~~~~did~~Ei~EaFA~~~l~~~~~lg~~~~~vN~~ 72 (123)
T PF02803_consen 31 ALERAGLTPDDIDVIEINEAFAAQVLAFLEALGLDPEKVNPN 72 (123)
T ss_dssp HHHHHT--GGGESEEEE--SBHHHHHHHHHHHTTGGGGBSTT
T ss_pred HHHHhCCCccccchhhccchhhhHHHHhhccccccccccCcc
Confidence 366789999999999999999999999999999999888875
No 167
>cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=87.99 E-value=4.5 Score=37.81 Aligned_cols=26 Identities=15% Similarity=0.287 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHcCCCcCCccEEEEe
Q 023511 56 MSLTAVTNLLEKYKIDPKQIGRLEVG 81 (281)
Q Consensus 56 la~~Aa~~aL~~a~l~~~dId~li~~ 81 (281)
-...|+++|++++|++|+|||++-..
T Consensus 286 ~~~~a~~~a~~~Agi~~~did~~e~~ 311 (386)
T cd00751 286 GPVPAIPKALKRAGLTLDDIDLIEIN 311 (386)
T ss_pred hHHHHHHHHHHHcCCCHHHcCEEEee
Confidence 34689999999999999999998753
No 168
>PLN02326 3-oxoacyl-[acyl-carrier-protein] synthase III
Probab=87.52 E-value=1.1 Score=41.75 Aligned_cols=83 Identities=14% Similarity=0.065 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCc-eee-eccc-ccchHHHHHHHHHHHH
Q 023511 55 SMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDI-EGV-DSTN-ACYGGTAALFNCVNWV 131 (281)
Q Consensus 55 ~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~-~~~-di~~-~C~g~~~aL~~A~~~l 131 (281)
....++++++|+++|++++|||.+++.... +..-..+.+.|++.. ..+ ..+ +++| ++++...+|..+.
T Consensus 280 ~~~~~~i~~~L~~~gl~~~dId~~v~Hq~n-----~~~~~~~~~~Lgl~~-ek~~~~l~~~GNt~sAsi~~~L~~~~--- 350 (379)
T PLN02326 280 RCVPQVIESALQKAGLTAESIDWLLLHQAN-----QRIIDAVAQRLGIPP-EKVISNLANYGNTSAASIPLALDEAV--- 350 (379)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEECCCC-----HHHHHHHHHHcCCCH-HHeeecHhhcCcHHHHHHHHHHHHHH---
Confidence 334467889999999999999999875321 112222344444321 112 122 2444 6667777776553
Q ss_pred HhCCC-CCCeEEEEEe
Q 023511 132 ESSSW-DGRYGLVVCT 146 (281)
Q Consensus 132 ~~g~~-~~~~aLVV~~ 146 (281)
+.+.. +++++|+++.
T Consensus 351 ~~g~~~~Gd~vll~~~ 366 (379)
T PLN02326 351 RSGKVKKGDVIATAGF 366 (379)
T ss_pred HcCCCCCCCEEEEEEE
Confidence 44321 5578887753
No 169
>TIGR01930 AcCoA-C-Actrans acetyl-CoA acetyltransferases. This model represents a large family of enzymes which catalyze the thiolysis of a linear fatty acid CoA (or acetoacetyl-CoA) using a second CoA molecule to produce acetyl-CoA and a CoA-ester product two carbons shorter (or, alternatively, the condensation of two molecules of acetyl-CoA to produce acetoacetyl-CoA and CoA). This enzyme is also known as "thiolase", "3-ketoacyl-CoA thiolase", "beta-ketothiolase" and "Fatty oxidation complex beta subunit". When catalyzing the degradative reaction on fatty acids the corresponding EC number is 2.3.1.16. The condensation reaction corresponds to 2.3.1.9. Note that the enzymes which catalyze the condensation are generally not involved in fatty acid biosynthesis, which is carried out by a decarboxylating condensation of acetyl and malonyl esters of acyl carrier proteins. Rather, this activity may produce acetoacetyl-CoA for pathways such as IPP biosynthesis in the absence of sufficient fatt
Probab=87.38 E-value=4 Score=38.23 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHcCCCcCCccEEEEe
Q 023511 57 SLTAVTNLLEKYKIDPKQIGRLEVG 81 (281)
Q Consensus 57 a~~Aa~~aL~~a~l~~~dId~li~~ 81 (281)
...|+++||+++|++|+|||++-+.
T Consensus 288 ~~~a~~~a~~~Agi~~~did~~e~~ 312 (386)
T TIGR01930 288 PVPAIPKALKKAGLSISDIDLFEIN 312 (386)
T ss_pred HHHHHHHHHHHcCCCHHHCCeeehc
Confidence 3589999999999999999999543
No 170
>PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=87.28 E-value=1.7 Score=39.42 Aligned_cols=83 Identities=12% Similarity=0.029 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCce-eee-ccc-ccchHHHHHHHHHHHH
Q 023511 55 SMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIE-GVD-STN-ACYGGTAALFNCVNWV 131 (281)
Q Consensus 55 ~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~-~~d-i~~-~C~g~~~aL~~A~~~l 131 (281)
....++.+++|+++|++++|||.+++...+.. .-..+.+.++... .... .++ +++ +|++...+|.. ++
T Consensus 230 ~~~~~~i~~~L~~~gl~~~did~~~~H~~~~~-----~~~~i~~~l~l~~-e~~~~~~~~~Gn~~sas~~~~L~~---~~ 300 (329)
T PRK07204 230 KYLMKFIDKLLMDAGYTLADIDLIVPHQASGP-----AMRLIRKKLGVDE-ERFVTIFEDHGNMIAASIPVALFE---AI 300 (329)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEeCCCCHH-----HHHHHHHHcCCCH-HHhhhhHhhhCcHHHHHHHHHHHH---HH
Confidence 34558889999999999999999997543222 2223445444421 1111 222 333 45555555554 34
Q ss_pred HhCCC-CCCeEEEEEe
Q 023511 132 ESSSW-DGRYGLVVCT 146 (281)
Q Consensus 132 ~~g~~-~~~~aLVV~~ 146 (281)
+.|.. +++++|+++.
T Consensus 301 ~~g~~~~Gd~vll~~~ 316 (329)
T PRK07204 301 KQKKVQRGNKILLLGT 316 (329)
T ss_pred HcCCCCCCCEEEEEEE
Confidence 44421 5678887753
No 171
>PRK09268 acetyl-CoA acetyltransferase; Provisional
Probab=87.00 E-value=1.7 Score=41.31 Aligned_cols=62 Identities=16% Similarity=0.165 Sum_probs=38.7
Q ss_pred ccchhHHHhhhCCCCceee-ee--cCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEec
Q 023511 18 CVQQEALEAHDGASKGKYT-IG--LGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGS 82 (281)
Q Consensus 18 ~v~~~~~~~~~~~~~~~~~-~g--i~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s 82 (281)
+++.++.++.++.++-++. .+ .+... +.. ..+.......|+++|++++|++|+|||++=+.-
T Consensus 272 vl~s~~~A~~l~~~p~~~i~~~~~~~~~~--~~~-~~~~~~~~~~a~~~a~~~AGl~~~Did~~Ei~d 336 (427)
T PRK09268 272 LLASEEWAAEHGLPVLAYLVDAETAAVDF--VHG-KEGLLMAPAYAVPRLLARNGLTLQDFDFYEIHE 336 (427)
T ss_pred EEecHHHHHHcCCCceEEEEEEEEEcCCc--ccc-cchhhccHHHHHHHHHHHcCCCHHHCCEEEecc
Confidence 4667777777776664322 22 22221 111 112233556799999999999999999997654
No 172
>PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=86.99 E-value=2.6 Score=38.36 Aligned_cols=86 Identities=8% Similarity=0.010 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCceeee-ccc-ccchHHHHHHHHHHHH
Q 023511 54 ISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVD-STN-ACYGGTAALFNCVNWV 131 (281)
Q Consensus 54 ~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~d-i~~-~C~g~~~aL~~A~~~l 131 (281)
.....++.+++|+++|++++|||.+++...+. ..-..+.+.+++...+-...++ ++| ++++...+|..+ +
T Consensus 238 ~~~~~~~~~~~L~~~g~~~~did~~i~H~~~~-----~~~~~~~~~lgl~~~k~~~~~~~~GN~~sas~~~~L~~~---~ 309 (338)
T PRK09258 238 VELAVDTWEAFLAQLGWAVEQVDRVICHQVGA-----AHTRAILKALGIDPEKVFTTFPTLGNMGPASLPITLAMA---A 309 (338)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEecCCCCH-----HHHHHHHHHhCCCHHHceehHhhhCCcHHhHHHHHHHHH---H
Confidence 45566788899999999999999998754322 2223344555543211112333 333 555556666554 3
Q ss_pred HhCCC-CCCeEEEEEee
Q 023511 132 ESSSW-DGRYGLVVCTD 147 (281)
Q Consensus 132 ~~g~~-~~~~aLVV~~e 147 (281)
+.|.. +++++|+++..
T Consensus 310 ~~g~~~~Gd~vll~~~G 326 (338)
T PRK09258 310 EEGFLKPGDRVALLGIG 326 (338)
T ss_pred HhCCCCCCCEEEEEEec
Confidence 44321 56788887653
No 173
>PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=86.13 E-value=2.6 Score=38.18 Aligned_cols=85 Identities=14% Similarity=0.089 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCc-eeee-ccc-ccchHHHHHHHHHH
Q 023511 53 VISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDI-EGVD-STN-ACYGGTAALFNCVN 129 (281)
Q Consensus 53 ~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~-~~~d-i~~-~C~g~~~aL~~A~~ 129 (281)
..+...++.+++|+++|++++|||.+++...+ +..-..+.+.++... ... ..++ .+| ++++...+|..+
T Consensus 225 ~~~~~~~~~~~~L~~~gl~~~did~~~~h~~~-----~~~~~~~~~~l~l~~-~k~~~~l~~~Gn~~sas~~~~L~~~-- 296 (326)
T PRK05963 225 AVRMMSGASQNVLASAAMTPQDIDRFFPHQAN-----ARIVDKVCETIGIPR-AKAASTLETYGNSSAATIPLSLSLA-- 296 (326)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEeCCCC-----HHHHHHHHHHcCCCH-HHhhhhHHhhCcHHHHHHHHHHHHH--
Confidence 34555678899999999999999999874322 223332334444321 111 1122 333 445555555433
Q ss_pred HHHhCC-CCCCeEEEEEe
Q 023511 130 WVESSS-WDGRYGLVVCT 146 (281)
Q Consensus 130 ~l~~g~-~~~~~aLVV~~ 146 (281)
++.+. .+++++|+++.
T Consensus 297 -~~~~~~~~Gd~vll~~~ 313 (326)
T PRK05963 297 -NLEQPLREGERLLFAAA 313 (326)
T ss_pred -HHhCCCCCCCEEEEEEE
Confidence 33432 15578888764
No 174
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=84.92 E-value=3 Score=37.64 Aligned_cols=82 Identities=16% Similarity=0.005 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCce-eee-ccc-ccchHHHHHHHHHHHHH
Q 023511 56 MSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIE-GVD-STN-ACYGGTAALFNCVNWVE 132 (281)
Q Consensus 56 la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~-~~d-i~~-~C~g~~~aL~~A~~~l~ 132 (281)
...++.+++|+++|++++|||.+++...+ +..-..+.+.++... .... .++ +++ +|++...+|..+ ++
T Consensus 226 ~~~~~i~~~L~~~g~~~~did~~~~h~~~-----~~~~~~~~~~lg~~~-~~~~~~~~~~Gn~~sas~~~~L~~~---~~ 296 (325)
T PRK12879 226 TMPKGARQVLEKAGLTKDDIDWVIPHQAN-----LRIIESLCEKLGIPM-EKTLVSVEYYGNTSAATIPLALDLA---LE 296 (325)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEECCCC-----HHHHHHHHHHcCCCH-HHhhhhHhhhCchHHHHHHHHHHHH---HH
Confidence 34567899999999999999999976422 233333445554421 1111 222 343 555566666544 45
Q ss_pred hCCC-CCCeEEEEEe
Q 023511 133 SSSW-DGRYGLVVCT 146 (281)
Q Consensus 133 ~g~~-~~~~aLVV~~ 146 (281)
.|.. +++++|+++.
T Consensus 297 ~g~~~~Gd~vll~~~ 311 (325)
T PRK12879 297 QGKIKPGDTLLLYGF 311 (325)
T ss_pred cCCCCCCCEEEEEEE
Confidence 5421 5678888764
No 175
>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III. Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment.
Probab=84.65 E-value=3.9 Score=36.85 Aligned_cols=85 Identities=19% Similarity=0.105 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCceeee-ccc-ccchHHHHHHHHHHHH
Q 023511 54 ISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVD-STN-ACYGGTAALFNCVNWV 131 (281)
Q Consensus 54 ~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~d-i~~-~C~g~~~aL~~A~~~l 131 (281)
.+...++.+++|+++|++++|||.+++...+ +..-..+.+.++....+-...++ +++ +|++-+.+|..+ +
T Consensus 218 ~~~~~~~~~~~l~~~g~~~~di~~~~~h~~~-----~~~~~~~~~~lgi~~~k~~~~~~~~Gn~~sas~~~~L~~~---~ 289 (318)
T TIGR00747 218 VRKMGDVVEETLEANGLDPEDIDWFVPHQAN-----LRIIEALAKRLELDMSQVVKTVHKYGNTSAASIPLALDEL---L 289 (318)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEECCCC-----HHHHHHHHHHcCCCHHHeeehHhhhCCHHHHHHHHHHHHH---H
Confidence 3445678899999999999999999965432 22333344444432111111232 333 555555666543 3
Q ss_pred HhCC-CCCCeEEEEEe
Q 023511 132 ESSS-WDGRYGLVVCT 146 (281)
Q Consensus 132 ~~g~-~~~~~aLVV~~ 146 (281)
+.|. .+++++|+++.
T Consensus 290 ~~~~~~~Gd~vll~~~ 305 (318)
T TIGR00747 290 RTGRIKPGDLLLLVAF 305 (318)
T ss_pred HcCCCCCCCEEEEEEE
Confidence 3432 15578888764
No 176
>PTZ00455 3-ketoacyl-CoA thiolase; Provisional
Probab=84.25 E-value=1.2 Score=42.42 Aligned_cols=64 Identities=16% Similarity=0.018 Sum_probs=39.4
Q ss_pred ccchhHHHhhhCCCC-----ceeeeecCceee--eeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEec
Q 023511 18 CVQQEALEAHDGASK-----GKYTIGLGQECM--AFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGS 82 (281)
Q Consensus 18 ~v~~~~~~~~~~~~~-----~~~~~gi~~r~~--~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s 82 (281)
++..++.++.++.++ -||. +.+.... .....+-.....+..|+++|++++|++|+|||++=+.-
T Consensus 266 vl~See~A~~l~~~p~~~~~v~i~-g~~~~~~~~~~~~~~~~~~~~~~~A~~~a~~~AGl~~~DiD~~Ei~d 336 (438)
T PTZ00455 266 VLASEEGLQKMGLSPNDSRLVEIK-SLACASGNLYEDPPDATRMFTSRAAAQKALSMAGVKPSDLQVAEVHD 336 (438)
T ss_pred EEecHHHHHhcCCCCCCCccEEEE-EEEEecCCcccCccccccchHHHHHHHHHHHHcCCCHHHCcEeeecc
Confidence 466677777777665 3333 3332211 01111112334457899999999999999999997643
No 177
>PRK05790 putative acyltransferase; Provisional
Probab=83.70 E-value=5.7 Score=37.18 Aligned_cols=57 Identities=18% Similarity=0.082 Sum_probs=34.7
Q ss_pred cchhHHHhhhCCCCc-eeeeecCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEEE
Q 023511 19 VQQEALEAHDGASKG-KYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEV 80 (281)
Q Consensus 19 v~~~~~~~~~~~~~~-~~~~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~ 80 (281)
++.+|.++.++.++- +|. |.+... .. +..... -...|+++||+++|++|+|||++-+
T Consensus 259 l~s~e~a~~~~~~~~~~I~-g~~~~~--~~-~~~~~~-~~~~a~~~a~~~Agi~~~did~~e~ 316 (393)
T PRK05790 259 VMSEAKAKELGLTPLARIV-SYAVAG--VD-PAIMGI-GPVPAIRKALEKAGWSLADLDLIEI 316 (393)
T ss_pred EecHHHHHHCCCCeeEEEE-EEEEcc--CC-CCccch-hHHHHHHHHHHHcCCCHHHCCEEEe
Confidence 455555555554443 443 444432 11 111112 2457999999999999999999964
No 178
>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.
Probab=83.52 E-value=3.5 Score=37.05 Aligned_cols=84 Identities=15% Similarity=0.150 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCc-eeee-ccc-ccchHHHHHHHHHHH
Q 023511 54 ISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDI-EGVD-STN-ACYGGTAALFNCVNW 130 (281)
Q Consensus 54 ~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~-~~~d-i~~-~C~g~~~aL~~A~~~ 130 (281)
.+...++.+++|+++|++++|||.+++...+ +..-..+.+.++... ... ..++ +++ ++++...+|..+
T Consensus 222 ~~~~~~~i~~~l~~~g~~~~di~~~~~h~~~-----~~~~~~~~~~lgl~~-~~~~~~~~~~Gn~~sas~~~~L~~~--- 292 (320)
T cd00830 222 VRLMPESIEEALEKAGLTPDDIDWFVPHQAN-----LRIIEAVAKRLGLPE-EKVVVNLDRYGNTSAASIPLALDEA--- 292 (320)
T ss_pred HHhhHHHHHHHHHHcCCCHHHCCEEEECCCC-----HHHHHHHHHHhCCCH-HHhhhhHHhhCcHHHHHHHHHHHHH---
Confidence 3456688999999999999999999876432 222333444444421 111 1222 333 444455555444
Q ss_pred HHhCCC-CCCeEEEEEe
Q 023511 131 VESSSW-DGRYGLVVCT 146 (281)
Q Consensus 131 l~~g~~-~~~~aLVV~~ 146 (281)
++.+.. +++++|+++.
T Consensus 293 ~~~~~~~~G~~vll~~~ 309 (320)
T cd00830 293 IEEGKLKKGDLVLLLGF 309 (320)
T ss_pred HHcCCCCCCCEEEEEEE
Confidence 344421 4688888764
No 179
>TIGR02430 pcaF beta-ketoadipyl CoA thiolase. Members of this family are designated beta-ketoadipyl CoA thiolase, an enzyme that acts at the end of pathways for the degradation of protocatechuate (from benzoate and related compounds) and of phenylacetic acid.
Probab=83.42 E-value=4 Score=38.47 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHcCCCcCCccEEE
Q 023511 57 SLTAVTNLLEKYKIDPKQIGRLE 79 (281)
Q Consensus 57 a~~Aa~~aL~~a~l~~~dId~li 79 (281)
...|+++||+++|++|+|||++-
T Consensus 298 ~~~a~~~al~~Agl~~~DID~~e 320 (400)
T TIGR02430 298 PVPATQKLLARAGLSIDQFDVIE 320 (400)
T ss_pred HHHHHHHHHHHhCCCHHHCCCcc
Confidence 46899999999999999999986
No 180
>PRK06158 thiolase; Provisional
Probab=83.32 E-value=1.5 Score=40.99 Aligned_cols=29 Identities=10% Similarity=0.135 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHcCCCcCCccEEEEecc
Q 023511 55 SMSLTAVTNLLEKYKIDPKQIGRLEVGSE 83 (281)
Q Consensus 55 ~la~~Aa~~aL~~a~l~~~dId~li~~s~ 83 (281)
.-...|+++|++++|++|+|||++=+..+
T Consensus 254 ~~~~~aa~~A~~~AGi~p~DId~~ElyD~ 282 (384)
T PRK06158 254 TAAAESGPRAFAMAGLTPADIDVVELYDA 282 (384)
T ss_pred hHHHHHHHHHHHHcCCCHHHCcEEEecCC
Confidence 34568999999999999999999876544
No 181
>PRK08142 acetyl-CoA acetyltransferase; Provisional
Probab=83.24 E-value=2 Score=40.39 Aligned_cols=64 Identities=11% Similarity=-0.034 Sum_probs=39.3
Q ss_pred ccchhHHHhhhCCCCceeeeecCcee--eeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecc
Q 023511 18 CVQQEALEAHDGASKGKYTIGLGQEC--MAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSE 83 (281)
Q Consensus 18 ~v~~~~~~~~~~~~~~~~~~gi~~r~--~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~ 83 (281)
+++.++.++.++.++-+|. |.+... .....++. .......|+++|++++|++|+|||++=+..+
T Consensus 218 vl~s~~~A~~l~~~~v~I~-g~~~~~~~~~~~~~~~-~~~~~~~aa~~a~~~AGi~~~did~~elyD~ 283 (388)
T PRK08142 218 VVVRPEIARSLKRPLVKVL-GAGEAIKGQMGGKVDL-TYSGAAWSGPAAFAEAGVTPADIKYASIYDS 283 (388)
T ss_pred EEecHHHHhhcCCCCEEEE-EEEEecCCccccCccc-ccHHHHHHHHHHHHHcCCCHHHCCEEEEecc
Confidence 4666676666654444554 333321 11111222 2345568999999999999999998876544
No 182
>PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=82.44 E-value=4.5 Score=36.39 Aligned_cols=83 Identities=16% Similarity=0.008 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCce-ee-eccc-ccchHHHHHHHHHHHH
Q 023511 55 SMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIE-GV-DSTN-ACYGGTAALFNCVNWV 131 (281)
Q Consensus 55 ~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~-~~-di~~-~C~g~~~aL~~A~~~l 131 (281)
+...++.+++|+++|++++|||.++..... +..-..+.+.++... .+.. .+ ++++ +|+..+..|. .++
T Consensus 219 ~~~~~~i~~~l~~~g~~~~di~~~~~h~~~-----~~~~~~~~~~lg~~~-~~~~~~~~~~Gn~~~a~~~~~L~---~~~ 289 (319)
T PRK09352 219 RELAKVAREALEAAGLTPEDIDWLVPHQAN-----LRIIDATAKKLGLPM-EKVVVTVDKYGNTSAASIPLALD---EAV 289 (319)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEECCCC-----HHHHHHHHHHhCCCH-HHhhhhHHhhCCHHHHHHHHHHH---HHH
Confidence 345568899999999999999999975322 222233334444321 1111 12 2333 4455555554 334
Q ss_pred HhCC-CCCCeEEEEEe
Q 023511 132 ESSS-WDGRYGLVVCT 146 (281)
Q Consensus 132 ~~g~-~~~~~aLVV~~ 146 (281)
+.|. .+++++|+++.
T Consensus 290 ~~g~~~~Gd~vll~s~ 305 (319)
T PRK09352 290 RDGRIKRGDLVLLEGF 305 (319)
T ss_pred HcCCCCCCCEEEEEEE
Confidence 4442 15678887764
No 183
>PRK06066 acetyl-CoA acetyltransferase; Provisional
Probab=81.89 E-value=1.8 Score=40.66 Aligned_cols=63 Identities=13% Similarity=0.058 Sum_probs=37.1
Q ss_pred ccchhHHHhhhCCCCceeeeecCcee--eeeCCCCCCHHHHHHHHHHHHHHHcCCC--cCCccEEEEe
Q 023511 18 CVQQEALEAHDGASKGKYTIGLGQEC--MAFCSEVEDVISMSLTAVTNLLEKYKID--PKQIGRLEVG 81 (281)
Q Consensus 18 ~v~~~~~~~~~~~~~~~~~~gi~~r~--~~~~~~~e~~~~la~~Aa~~aL~~a~l~--~~dId~li~~ 81 (281)
+++.++.++.++.++-+|. |++... ......+-........|+++|++++|++ ++|||++-+.
T Consensus 218 vl~s~~~a~~l~~~pv~I~-g~g~~~~~~~~~~~~~~~~~~~~~Aa~~a~~~AGi~~p~~DiD~~ei~ 284 (385)
T PRK06066 218 VLASEEVAKKLTDDPVWIK-GIGWSTESSNLETAELGKANYMRIAADMAYKMAGIESPRKEVDAAEVD 284 (385)
T ss_pred EEeCHHHHHhcCCCCEEEE-EEEEecCCcccccccccccHHHHHHHHHHHHHcCCCCCHHHCcEEEEe
Confidence 4566666666655555554 444321 1111111112222337999999999997 6999999754
No 184
>PRK08313 acetyl-CoA acetyltransferase; Provisional
Probab=81.31 E-value=2.9 Score=39.14 Aligned_cols=65 Identities=14% Similarity=0.076 Sum_probs=40.0
Q ss_pred ccchhHHHhhhCCCCc-eeeeecCcee--eeeCCCCCCHHHHHHHHHHHHHHHcCCC--cCCccEEEEecc
Q 023511 18 CVQQEALEAHDGASKG-KYTIGLGQEC--MAFCSEVEDVISMSLTAVTNLLEKYKID--PKQIGRLEVGSE 83 (281)
Q Consensus 18 ~v~~~~~~~~~~~~~~-~~~~gi~~r~--~~~~~~~e~~~~la~~Aa~~aL~~a~l~--~~dId~li~~s~ 83 (281)
+++.+|.++.++.++. ||. |.+... ..+...+.........|+++|++++|++ ++|||++=+..+
T Consensus 216 vl~s~e~a~~l~~~~~~~I~-g~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~Agi~~p~~Did~~el~d~ 285 (386)
T PRK08313 216 VIGDEEAADAAAGRPVAWIH-GTAMRTEPLAFAGRDQVNPQAGRDAAAALWKAAGITDPRDEIDVAEIYVP 285 (386)
T ss_pred EEecHHHHHhcCCCCCeEEE-EEEEEecCcccccccccccHHHHHHHHHHHHHcCCCCChhhCCEEEeccC
Confidence 4666777766654444 664 444331 1122222223355668999999999997 699998866543
No 185
>PRK06065 acetyl-CoA acetyltransferase; Provisional
Probab=81.13 E-value=2.6 Score=39.64 Aligned_cols=65 Identities=14% Similarity=-0.007 Sum_probs=39.4
Q ss_pred ccchhHHHhhhCCCCceeeeecCce--eeeeCCCCCCHHHHHHHHHHHHHHHcCCCc--CCccEEEEecc
Q 023511 18 CVQQEALEAHDGASKGKYTIGLGQE--CMAFCSEVEDVISMSLTAVTNLLEKYKIDP--KQIGRLEVGSE 83 (281)
Q Consensus 18 ~v~~~~~~~~~~~~~~~~~~gi~~r--~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~--~dId~li~~s~ 83 (281)
.++.+|.++.++.++-||. +++.. +..+...+.........|+++|++++|+++ +|||++=+.-+
T Consensus 224 vl~s~e~A~~l~~~~v~I~-g~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~aGi~~p~~diD~~ei~D~ 292 (392)
T PRK06065 224 VLASEDLARRYTDTPVWVE-GVGWTLDNTEWPNRDLAYPRYVEFAARMAYKMAGIERPRKEIDVAEPYDP 292 (392)
T ss_pred EEeCHHHHHhcCCCCEEEE-EEEEecCccccccccccccHHHHHHHHHHHHHcCCCCchhhCcEEEecCC
Confidence 4667777777766666654 33322 111111111222233679999999999985 99999976543
No 186
>PRK07855 lipid-transfer protein; Provisional
Probab=80.74 E-value=1.9 Score=40.45 Aligned_cols=64 Identities=8% Similarity=-0.018 Sum_probs=37.2
Q ss_pred ccchhHHHhhhCCCCceeeeecCcee--eee--C---CCCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEec
Q 023511 18 CVQQEALEAHDGASKGKYTIGLGQEC--MAF--C---SEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGS 82 (281)
Q Consensus 18 ~v~~~~~~~~~~~~~~~~~~gi~~r~--~~~--~---~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s 82 (281)
++++++.++.++.++-||. |++... ... . .++-........|+++|++++|++|+|||++=+.-
T Consensus 223 vl~see~A~~l~~~pv~I~-g~~~~~~~~~~~~~~~~~~d~~~~~~~~~aa~~a~~~AGi~~~DiDv~El~D 293 (386)
T PRK07855 223 VVTSAERARDLKQRPAVIK-AAAQGSGADQYMMTSYYRDDITGLPEMGLVARQLWAQSGLGPADIDTAILYD 293 (386)
T ss_pred EEecHHHHhhCCCCCEEEE-EEEEecCCccccccccccccccccchHHHHHHHHHHHcCCCHHHCcEEEecc
Confidence 4566666666654444443 443321 000 0 01112223344799999999999999999986543
No 187
>PRK08235 acetyl-CoA acetyltransferase; Provisional
Probab=80.71 E-value=7.2 Score=36.66 Aligned_cols=80 Identities=15% Similarity=0.084 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCC-Cce--eeecc--cccchHHHHHHHHHHH
Q 023511 56 MSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNT-DIE--GVDST--NACYGGTAALFNCVNW 130 (281)
Q Consensus 56 la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~-~~~--~~di~--~~C~g~~~aL~~A~~~ 130 (281)
....|+++||+++|++|+|||++-+ .+. .+...-...+.|++...+ |+. ..-.+ .||+|....+..+..+
T Consensus 292 ~~~~a~~~al~~agl~~~did~~e~----~d~-f~~~~l~~~e~lg~~~~pvN~~GG~la~Ghp~gasG~~~~~~l~~qL 366 (393)
T PRK08235 292 TPGYAINALLEKTGKTVEDIDLFEI----NEA-FAAVALASTEIAGIDPEKVNVNGGAVALGHPIGASGARIIVTLIHEL 366 (393)
T ss_pred hHHHHHHHHHHHhCCCHHHCCeehh----cch-hHHHHHHHHHHhCCCcccCCcCCchHHhCCcHHHHHHHHHHHHHHHH
Confidence 4468999999999999999999853 222 222333333445432110 111 11122 2666666666666666
Q ss_pred HHhCCCCCCeEEE
Q 023511 131 VESSSWDGRYGLV 143 (281)
Q Consensus 131 l~~g~~~~~~aLV 143 (281)
-..+ +++.|+
T Consensus 367 ~~~~---~~~g~~ 376 (393)
T PRK08235 367 KRRG---GGIGIA 376 (393)
T ss_pred HhcC---CCeEEE
Confidence 5432 355444
No 188
>PRK06289 acetyl-CoA acetyltransferase; Provisional
Probab=80.32 E-value=2.1 Score=40.26 Aligned_cols=63 Identities=13% Similarity=0.157 Sum_probs=37.8
Q ss_pred ccchhHHHhhhCC-CC-ceeeeecCcee--eeeCC------CCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEe
Q 023511 18 CVQQEALEAHDGA-SK-GKYTIGLGQEC--MAFCS------EVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVG 81 (281)
Q Consensus 18 ~v~~~~~~~~~~~-~~-~~~~~gi~~r~--~~~~~------~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~ 81 (281)
.++.+|.++.++. ++ -||. |.+... ..+.+ .+.........|+++|++++|++|+|||++-+.
T Consensus 230 vl~s~e~a~~l~~~~~~~~i~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~a~~~Agi~~~Didv~el~ 302 (403)
T PRK06289 230 VLASDAYLRDYADARPIPRIK-GWGHRTAPLGLEQKLDRSAGDPYVLPHVRQAVLDAYRRAGVGLDDLDGFEVH 302 (403)
T ss_pred EEEcHHHHHHhccCCCCEEEE-EEEEeccccccccccccccccccccHHHHHHHHHHHHHcCCCHHHCeEEeee
Confidence 3566677666654 23 3554 444332 11111 011223335689999999999999999998754
No 189
>PRK14691 3-oxoacyl-(acyl carrier protein) synthase II; Provisional
Probab=80.24 E-value=5.3 Score=36.85 Aligned_cols=47 Identities=17% Similarity=0.187 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHcCCCcCCccEEEEe-cccCCCCCcchHHHHHHHHh
Q 023511 54 ISMSLTAVTNLLEKYKIDPKQIGRLEVG-SETVIDKSKSIKTFLMQIFE 101 (281)
Q Consensus 54 ~~la~~Aa~~aL~~a~l~~~dId~li~~-s~t~~~~~p~~a~~i~~~l~ 101 (281)
..-..+|.++||+++|++|+|||.|-.. |.|+. .-+.-..-|.+.++
T Consensus 205 ~~~~~~ai~~AL~~Agl~p~dIdyIeaHgtgT~~-~D~~E~~Ai~~~fg 252 (342)
T PRK14691 205 GDGAYRAMKIALRQAGITPEQVQHLNAHATSTPV-GDLGEINAIKHLFG 252 (342)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEecCCCCcC-CCHHHHHHHHHHhC
Confidence 4567789999999999999999998743 33333 23444444556555
No 190
>COG0304 FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=79.60 E-value=6.2 Score=37.40 Aligned_cols=77 Identities=14% Similarity=0.239 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHcCCCcCCccEEE-EecccCCCCCcchHHHHHHHHhhcCCCCce--e-eecccccchHHHHHHHHHHH
Q 023511 55 SMSLTAVTNLLEKYKIDPKQIGRLE-VGSETVIDKSKSIKTFLMQIFEKFGNTDIE--G-VDSTNACYGGTAALFNCVNW 130 (281)
Q Consensus 55 ~la~~Aa~~aL~~a~l~~~dId~li-~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~--~-~di~~~C~g~~~aL~~A~~~ 130 (281)
+=+.+|.+.||+++|++|+|||.|- .+|.|+.. -+.-..-|...++... .+.. . -.+.+-|.|..-++..+..+
T Consensus 276 ~Ga~~am~~AL~~Agl~~~~idYinaHgTsT~~n-D~~E~~ai~~vfg~~~-~~~~vsstKs~tGH~lGAaGaveai~~~ 353 (412)
T COG0304 276 EGAIRAMRAALADAGLTPEDIDYINAHGTSTPAN-DKAESLAIKRVFGEHA-KSLPVSSTKSLTGHTLGAAGAVEAIISL 353 (412)
T ss_pred chHHHHHHHHHHHcCCCHhHCCEEeCCCccCCCc-cHHHHHHHHHHhcccc-cCceeeecccccccChhhHHHHHHHHHH
Confidence 3566999999999999999999999 55555543 3444444555555422 1111 1 12445666666666665555
Q ss_pred HHh
Q 023511 131 VES 133 (281)
Q Consensus 131 l~~ 133 (281)
+.-
T Consensus 354 l~l 356 (412)
T COG0304 354 LAL 356 (412)
T ss_pred HHH
Confidence 544
No 191
>cd00834 KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP.
Probab=79.43 E-value=4.3 Score=37.80 Aligned_cols=81 Identities=9% Similarity=0.104 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHcCCCcCCccEEEEe-cccCCCCCcchHHHHHHHHhhcCCCCceee----eccc-ccchHHHHHHHH
Q 023511 54 ISMSLTAVTNLLEKYKIDPKQIGRLEVG-SETVIDKSKSIKTFLMQIFEKFGNTDIEGV----DSTN-ACYGGTAALFNC 127 (281)
Q Consensus 54 ~~la~~Aa~~aL~~a~l~~~dId~li~~-s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~----di~~-~C~g~~~aL~~A 127 (281)
..-..++++++|+++|++++|||++... |.|+. .-+.-..-+.+.++... +.++.. -++. .+++++..|..+
T Consensus 274 ~~~~~~~i~~al~~agi~~~dId~v~~h~tgt~~-~d~~E~~al~~~~~~~~-~~~~v~s~k~~~Gh~~~AsG~~~l~~~ 351 (406)
T cd00834 274 GEGAARAMRAALADAGLSPEDIDYINAHGTSTPL-NDAAESKAIKRVFGEHA-KKVPVSSTKSMTGHLLGAAGAVEAIAT 351 (406)
T ss_pred cHHHHHHHHHHHHHcCCCHHHCCEEecccccCcc-ccHHHHHHHHHHhcccC-CCCceeCcchhhccchhhhhHHHHHHH
Confidence 3456679999999999999999999844 33332 12222322333333210 111111 1333 577777778888
Q ss_pred HHHHHhCCC
Q 023511 128 VNWVESSSW 136 (281)
Q Consensus 128 ~~~l~~g~~ 136 (281)
...++.+..
T Consensus 352 ~~~l~~~~i 360 (406)
T cd00834 352 LLALRDGVL 360 (406)
T ss_pred HHHHhcCCc
Confidence 888887754
No 192
>cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs. PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions.
Probab=79.21 E-value=7.5 Score=35.82 Aligned_cols=84 Identities=12% Similarity=0.023 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHc--CCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCce----ee-eccc-ccchHHHHHH
Q 023511 54 ISMSLTAVTNLLEKY--KIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIE----GV-DSTN-ACYGGTAALF 125 (281)
Q Consensus 54 ~~la~~Aa~~aL~~a--~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~----~~-di~~-~C~g~~~aL~ 125 (281)
.+...++++++|+++ |++++|||.+++..... ..-..+.+.+++.. ..+. .+ +.+| ++++...+|.
T Consensus 258 ~~~~~~~i~~~L~~~~~g~~~~did~~~~H~~~~-----~i~~~v~~~lgl~~-~~~~~s~~~l~~~GN~~sasi~~~L~ 331 (361)
T cd00831 258 EKNLERVLRKLLARLGIGLFKLAFDHWCVHPGGR-----AVLDAVEKALGLSP-EDLEASRMVLRRYGNMSSSSVLYVLA 331 (361)
T ss_pred HHHHHHHHHHHhccccCCCccccceEEEECCCCh-----HHHHHHHHHcCCCH-HHHHHHHHHHHHhCCchhccHHHHHH
Confidence 345666889999999 99999999999764322 12222334444321 1221 22 3444 6677777777
Q ss_pred HHHHHHHhCCC-CCCeEEEEEe
Q 023511 126 NCVNWVESSSW-DGRYGLVVCT 146 (281)
Q Consensus 126 ~A~~~l~~g~~-~~~~aLVV~~ 146 (281)
.+. +.|.. +++++|+++.
T Consensus 332 ~~~---~~g~~~~Gd~vll~~~ 350 (361)
T cd00831 332 YME---AKGRVKRGDRGLLIAF 350 (361)
T ss_pred HHH---HhCCCCCCCEEEEEEE
Confidence 664 33321 4578887763
No 193
>cd00828 elong_cond_enzymes "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases.They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues.
Probab=79.17 E-value=6.5 Score=36.75 Aligned_cols=80 Identities=10% Similarity=0.082 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHcCCCcCCccEEEEe-cccCCCCCcchHHHHHHHHhhcCCCCceeee----ccc-ccchHHHHHHHH
Q 023511 54 ISMSLTAVTNLLEKYKIDPKQIGRLEVG-SETVIDKSKSIKTFLMQIFEKFGNTDIEGVD----STN-ACYGGTAALFNC 127 (281)
Q Consensus 54 ~~la~~Aa~~aL~~a~l~~~dId~li~~-s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~d----i~~-~C~g~~~aL~~A 127 (281)
..-..+|.++||+++|++|+|||+|... |.|+.. -+.-..-+.+.++..+ ...+... ++. ..++++..|..+
T Consensus 273 ~~~~~~a~~~Al~~Agi~~~dId~i~~hgtgt~~~-D~~E~~ai~~~~~~~~-~~~~v~s~K~~~Gh~~~Asg~~~l~~~ 350 (407)
T cd00828 273 GKGIARAIRTALAKAGLSLDDLDVISAHGTSTPAN-DVAESRAIAEVAGALG-APLPVTAQKALFGHSKGAAGALQLIGA 350 (407)
T ss_pred hHHHHHHHHHHHHHcCCCHHHcCEEecccccCccc-cHHHHHHHHHHHhccC-CCceeecccchhccchhhhhHHHHHHH
Confidence 3566889999999999999999999843 333332 2344444555555432 1222222 222 444445555555
Q ss_pred HHHHHhCC
Q 023511 128 VNWVESSS 135 (281)
Q Consensus 128 ~~~l~~g~ 135 (281)
...++.+.
T Consensus 351 ~~~l~~~~ 358 (407)
T cd00828 351 LQSLEHGL 358 (407)
T ss_pred HHHHhcCc
Confidence 55666553
No 194
>PRK08722 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=79.15 E-value=8.6 Score=36.37 Aligned_cols=80 Identities=13% Similarity=0.079 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHcCCCcCCccEEE-EecccCCCCCcchHHHHHHHHhhcCCCCceeeecc---c--ccchHHHHHHHHH
Q 023511 55 SMSLTAVTNLLEKYKIDPKQIGRLE-VGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDST---N--ACYGGTAALFNCV 128 (281)
Q Consensus 55 ~la~~Aa~~aL~~a~l~~~dId~li-~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~---~--~C~g~~~aL~~A~ 128 (281)
....+|.+++|+++|++|+|||+|- .+|.|+.. -+.-..-|.+.++..+.+.++.-.+. + ..++++..+..+.
T Consensus 278 ~~~~~a~~~Al~~agi~~~did~ie~hgtgt~~~-D~~E~~al~~~fg~~~~~~~~v~s~K~~~GH~~~AaG~~~~~~~~ 356 (414)
T PRK08722 278 SGGALAMEAAMRDAGVTGEQIGYVNAHGTSTPAG-DVAEIKGIKRALGEAGSKQVLVSSTKSMTGHLLGAAGSVEAIITV 356 (414)
T ss_pred HHHHHHHHHHHHHcCCCHHHcCEEEccCccCCCC-CHHHHHHHHHHhcccCCCCceeeCcccccccchHHHHHHHHHHHH
Confidence 3457889999999999999999986 44444332 34444445666654321223222221 2 2334444444455
Q ss_pred HHHHhCC
Q 023511 129 NWVESSS 135 (281)
Q Consensus 129 ~~l~~g~ 135 (281)
..|+.+.
T Consensus 357 l~l~~~~ 363 (414)
T PRK08722 357 MSLVDQI 363 (414)
T ss_pred HHHhcCc
Confidence 5666653
No 195
>COG0332 FabH 3-oxoacyl-[acyl-carrier-protein]
Probab=79.04 E-value=3.9 Score=37.40 Aligned_cols=30 Identities=20% Similarity=0.243 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHHHHcCCCcCCccEEEEe
Q 023511 52 DVISMSLTAVTNLLEKYKIDPKQIGRLEVG 81 (281)
Q Consensus 52 ~~~~la~~Aa~~aL~~a~l~~~dId~li~~ 81 (281)
.+..+..++.+++|++++++++|||.++..
T Consensus 220 ~av~~~~~~~~~~L~~~~l~~~dId~~vpH 249 (323)
T COG0332 220 FAVRAMPKAIEEVLEKAGLTPEDIDWFVPH 249 (323)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEccc
Confidence 378888999999999999999999999854
No 196
>PRK07108 acetyl-CoA acetyltransferase; Provisional
Probab=79.02 E-value=2.1 Score=40.19 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHcCCCcCCccEEE
Q 023511 56 MSLTAVTNLLEKYKIDPKQIGRLE 79 (281)
Q Consensus 56 la~~Aa~~aL~~a~l~~~dId~li 79 (281)
-...|+++||+++|++|+|||++=
T Consensus 291 ~~~~a~~~al~~agl~~~Did~~e 314 (392)
T PRK07108 291 GPVFAVPKLLKQAGLKVDDIDLWE 314 (392)
T ss_pred hHHHHHHHHHHHcCCCHHHcCchH
Confidence 447899999999999999999985
No 197
>PRK07516 acetyl-CoA acetyltransferase; Provisional
Probab=77.97 E-value=3.1 Score=38.99 Aligned_cols=27 Identities=11% Similarity=0.027 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHcCCCcCCccEEEEe
Q 023511 55 SMSLTAVTNLLEKYKIDPKQIGRLEVG 81 (281)
Q Consensus 55 ~la~~Aa~~aL~~a~l~~~dId~li~~ 81 (281)
.-...|+++|++++|++|+|||++-+.
T Consensus 260 ~~~~~a~~~a~~~agl~~~did~~e~~ 286 (389)
T PRK07516 260 EGPRRAWQRALAQAGVTLDDLSFVETH 286 (389)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEe
Confidence 445689999999999999999998754
No 198
>cd00829 SCP-x_thiolase Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism. The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein.
Probab=76.08 E-value=4.7 Score=37.28 Aligned_cols=30 Identities=17% Similarity=0.123 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHcCCCcCCccEEEEecc
Q 023511 54 ISMSLTAVTNLLEKYKIDPKQIGRLEVGSE 83 (281)
Q Consensus 54 ~~la~~Aa~~aL~~a~l~~~dId~li~~s~ 83 (281)
..-...|+++||+++|++++|||++=+..+
T Consensus 250 ~~~~~~a~~~al~~Agl~~~did~~ei~d~ 279 (375)
T cd00829 250 LDAARLAARRAYKMAGITPDDIDVAELYDC 279 (375)
T ss_pred cHHHHHHHHHHHHHcCCCHHHCCEEEecCc
Confidence 344568999999999999999999976543
No 199
>PRK09185 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed
Probab=76.06 E-value=7 Score=36.60 Aligned_cols=76 Identities=13% Similarity=0.198 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHcCCCcCCccEEEE-ecccCCCCCcchHHHHHHHHhhcCCCCceeee--ccc-ccchHHHHHHHHHHHHH
Q 023511 57 SLTAVTNLLEKYKIDPKQIGRLEV-GSETVIDKSKSIKTFLMQIFEKFGNTDIEGVD--STN-ACYGGTAALFNCVNWVE 132 (281)
Q Consensus 57 a~~Aa~~aL~~a~l~~~dId~li~-~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~d--i~~-~C~g~~~aL~~A~~~l~ 132 (281)
..+|.++||+++|++|+|||++.. +|.|+.. -+.-..-+.+.++.. ..+.+.- ++. .+++++..+..+...++
T Consensus 262 ~~~a~~~Al~~Agl~~~dId~v~~hgtgt~~~-D~~E~~al~~~f~~~--~pv~s~K~~~Gh~~~AaG~~~l~~~~~~l~ 338 (392)
T PRK09185 262 AILAMQQALADAGLAPADIGYINLHGTATPLN-DAMESRAVAAVFGDG--VPCSSTKGLTGHTLGAAGAVEAAICWLALR 338 (392)
T ss_pred HHHHHHHHHHHcCCCHHHccEEEeCCCCCcCC-CHHHHHHHHHHhCCC--CceeCCCcccccChhhcchHHHHHHHHHHh
Confidence 458999999999999999999873 3334332 233333344444321 0111111 232 45555555555566666
Q ss_pred hCC
Q 023511 133 SSS 135 (281)
Q Consensus 133 ~g~ 135 (281)
.|.
T Consensus 339 ~~~ 341 (392)
T PRK09185 339 HGL 341 (392)
T ss_pred cCC
Confidence 654
No 200
>KOG1394 consensus 3-oxoacyl-(acyl-carrier-protein) synthase (I and II) [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=75.93 E-value=2.4 Score=39.10 Aligned_cols=42 Identities=17% Similarity=0.195 Sum_probs=30.2
Q ss_pred eeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEE-EecccCC
Q 023511 44 MAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLE-VGSETVI 86 (281)
Q Consensus 44 ~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li-~~s~t~~ 86 (281)
+++..|+.+ -.=+..|.++||++||+.|+|||.|= .+|+|+-
T Consensus 291 ~HiT~P~~d-G~Ga~~am~raL~~Agl~pe~i~YvNAHATST~~ 333 (440)
T KOG1394|consen 291 YHITSPDPD-GAGAVLAMERALKDAGLSPEDIDYVNAHATSTPL 333 (440)
T ss_pred cccCCCCCC-cchHHHHHHHHHHHcCCChhhcCeeecccccCcC
Confidence 334444332 23577788999999999999999997 5666553
No 201
>TIGR03150 fabF beta-ketoacyl-acyl-carrier-protein synthase II. FabB sequences should fall well below the noise cutoff of this model.
Probab=75.75 E-value=7.4 Score=36.31 Aligned_cols=45 Identities=18% Similarity=0.343 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHcCCCcCCccEEEE-ecccCCCCCcchHHHHHHHHh
Q 023511 56 MSLTAVTNLLEKYKIDPKQIGRLEV-GSETVIDKSKSIKTFLMQIFE 101 (281)
Q Consensus 56 la~~Aa~~aL~~a~l~~~dId~li~-~s~t~~~~~p~~a~~i~~~l~ 101 (281)
-..+|+++||+++|++|+|||++.. +|.|+.. -+.-...+.+.++
T Consensus 276 ~~~~ai~~Al~~Agi~~~dId~ve~h~tgt~~~-D~~E~~a~~~~~~ 321 (407)
T TIGR03150 276 GAARAMRAALKDAGINPEDVDYINAHGTSTPLG-DKAETKAIKRVFG 321 (407)
T ss_pred HHHHHHHHHHHHcCCCHhHCCEEeCcCCCCCCC-CHHHHHHHHHHhc
Confidence 4568999999999999999999974 3333321 2333333445444
No 202
>PRK06064 acetyl-CoA acetyltransferase; Provisional
Probab=75.44 E-value=3.7 Score=38.36 Aligned_cols=63 Identities=16% Similarity=0.112 Sum_probs=36.3
Q ss_pred cchhHHHhhhCCCCceeeeecCceeee--eCC-CCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEec
Q 023511 19 VQQEALEAHDGASKGKYTIGLGQECMA--FCS-EVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGS 82 (281)
Q Consensus 19 v~~~~~~~~~~~~~~~~~~gi~~r~~~--~~~-~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s 82 (281)
++.++.++..+..+-+| .|.+..... +.. ++.....-...|+++||+++|++|+|||++-..-
T Consensus 220 L~s~~~A~~~~~~~v~I-~g~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~aGi~~~did~~e~~d 285 (389)
T PRK06064 220 LASEEKAKEYTDTPVWI-KASGQASDTIALHDRKDFTTLDAAVVAAEKAYKMAGIEPKDIDVAEVHD 285 (389)
T ss_pred EecHHHHHHhcCCCeEE-EEEEEecCcccccccccccccHHHHHHHHHHHHHcCCCHHHCCEEEecC
Confidence 45555555554334344 344443211 111 1111223445799999999999999999987543
No 203
>PRK07910 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=75.14 E-value=18 Score=34.25 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHcCCCcCCccEEE-EecccCCCCCcchHHHHHHHHh
Q 023511 56 MSLTAVTNLLEKYKIDPKQIGRLE-VGSETVIDKSKSIKTFLMQIFE 101 (281)
Q Consensus 56 la~~Aa~~aL~~a~l~~~dId~li-~~s~t~~~~~p~~a~~i~~~l~ 101 (281)
-..+|.++||+++|++|+|||++- .+|.|+.. -+.-..-+++.++
T Consensus 287 ~~~~a~~~Al~~agi~~~did~ie~hgtgt~~~-D~~E~~Al~~~fg 332 (418)
T PRK07910 287 RAGHAMTRAIELAGLTPGDIDHVNAHATGTSVG-DVAEGKAINNALG 332 (418)
T ss_pred HHHHHHHHHHHHhCCCHHHCCEEEcCCcCCCCC-CHHHHHHHHHHhC
Confidence 467899999999999999999997 33333322 2444444555554
No 204
>PRK09051 beta-ketothiolase; Provisional
Probab=73.70 E-value=2.7 Score=39.53 Aligned_cols=42 Identities=12% Similarity=0.104 Sum_probs=36.5
Q ss_pred HhhcCCCCCCCCcEEecCCCChhHHHHHHHhccchhhhhcCC
Q 023511 230 KLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNAR 271 (281)
Q Consensus 230 ~l~~~g~~~~did~~i~Hq~n~~i~~~~~~~lg~~~~~~~~~ 271 (281)
+|+++|++++|||+|=+|-+.....-...+.|||.+...+++
T Consensus 301 al~~agi~~~did~~ei~d~f~~~~~~~~e~lg~~~~~vN~~ 342 (394)
T PRK09051 301 ALERAGLTVADLDVIEANEAFAAQACAVTRELGLDPAKVNPN 342 (394)
T ss_pred HHHHcCCCHHHcCEEEecCccHHHHHHHHHHhCCCccccCCC
Confidence 467799999999999999987777777889999988877776
No 205
>PRK06633 acetyl-CoA acetyltransferase; Provisional
Probab=73.51 E-value=4.3 Score=38.18 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHcCCCcCCccEEE
Q 023511 55 SMSLTAVTNLLEKYKIDPKQIGRLE 79 (281)
Q Consensus 55 ~la~~Aa~~aL~~a~l~~~dId~li 79 (281)
.....|+++||+++|++|+|||++=
T Consensus 290 ~~~~~a~~~Al~~AGl~p~DID~~e 314 (392)
T PRK06633 290 TAPVPASQKALSKAGWSVNDLEVIE 314 (392)
T ss_pred hHHHHHHHHHHHHcCCCHHHcCeee
Confidence 3457899999999999999999986
No 206
>PRK08963 fadI 3-ketoacyl-CoA thiolase; Reviewed
Probab=73.42 E-value=4.7 Score=38.36 Aligned_cols=29 Identities=10% Similarity=0.041 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHcCCCcCCccEEEEecc
Q 023511 55 SMSLTAVTNLLEKYKIDPKQIGRLEVGSE 83 (281)
Q Consensus 55 ~la~~Aa~~aL~~a~l~~~dId~li~~s~ 83 (281)
.....|+++||+++|++++|||++=+.-+
T Consensus 309 ~~~~~a~~~al~~AGl~~~DiD~~Ei~d~ 337 (428)
T PRK08963 309 LGPAYATPLALERAGLTLADLTLIDMHEA 337 (428)
T ss_pred hHHHHHHHHHHHHcCCCHHHCCEEEEccc
Confidence 34567999999999999999999976543
No 207
>PRK05952 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=73.04 E-value=7.6 Score=36.33 Aligned_cols=32 Identities=19% Similarity=0.353 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHcCCCcCCccEEEE-ecccC
Q 023511 54 ISMSLTAVTNLLEKYKIDPKQIGRLEV-GSETV 85 (281)
Q Consensus 54 ~~la~~Aa~~aL~~a~l~~~dId~li~-~s~t~ 85 (281)
.....+|.++||+++|++|+|||+|-. +|.|+
T Consensus 253 ~~~~~~ai~~Al~~agi~p~dId~i~~hgtgt~ 285 (381)
T PRK05952 253 GKSAIAAIQQCLARSGLTPEDIDYIHAHGTATR 285 (381)
T ss_pred HHHHHHHHHHHHHHhCCCHHHeeEEEccCCCCC
Confidence 346789999999999999999999973 44333
No 208
>cd00832 CLF Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria. CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine.
Probab=73.03 E-value=10 Score=35.61 Aligned_cols=80 Identities=9% Similarity=0.050 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHcCCCcCCccEEEEe-cccCCCCCcchHHHHHHHHhhcCCCCceeee--ccc-ccchHHHHHHHHHH
Q 023511 54 ISMSLTAVTNLLEKYKIDPKQIGRLEVG-SETVIDKSKSIKTFLMQIFEKFGNTDIEGVD--STN-ACYGGTAALFNCVN 129 (281)
Q Consensus 54 ~~la~~Aa~~aL~~a~l~~~dId~li~~-s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~d--i~~-~C~g~~~aL~~A~~ 129 (281)
..-..+|.++||+++|++|++||+|... |.|+.. -+.-..-+.+.++... ..+.+.- ++. .+++++..+..+..
T Consensus 269 ~~~~~~a~~~al~~ag~~~~~i~~v~~hgtgt~~~-D~~E~~al~~~fg~~~-~pv~s~K~~~Gh~~~aaG~~~l~~~~l 346 (399)
T cd00832 269 PPGLARAIRLALADAGLTPEDVDVVFADAAGVPEL-DRAEAAALAAVFGPRG-VPVTAPKTMTGRLYAGGAPLDVATALL 346 (399)
T ss_pred HHHHHHHHHHHHHHcCCCHHHccEEEeccCcCCCC-CHHHHHHHHHHhCCCC-CceeCCCchhcchHHHHHHHHHHHHHH
Confidence 4456789999999999999999998743 333332 2344444555554311 0111111 222 34455555555666
Q ss_pred HHHhCC
Q 023511 130 WVESSS 135 (281)
Q Consensus 130 ~l~~g~ 135 (281)
.|+.+.
T Consensus 347 ~l~~~~ 352 (399)
T cd00832 347 ALRDGV 352 (399)
T ss_pred HHhCCC
Confidence 666653
No 209
>KOG1389 consensus 3-oxoacyl CoA thiolase [Lipid transport and metabolism]
Probab=73.02 E-value=2.9 Score=37.90 Aligned_cols=41 Identities=12% Similarity=0.178 Sum_probs=35.2
Q ss_pred hhcCCCCCCCCcEEecCCCChhHHHHHHHhccchhhhhcCC
Q 023511 231 LEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNAR 271 (281)
Q Consensus 231 l~~~g~~~~did~~i~Hq~n~~i~~~~~~~lg~~~~~~~~~ 271 (281)
|+.+|++.+|||+|=+..+...=.-...++|++..+++++.
T Consensus 330 lk~aGL~v~did~FEINEAFAsQ~~yc~~KL~ld~ekVN~~ 370 (435)
T KOG1389|consen 330 LKAAGLEVDDIDLFEINEAFASQALYCRNKLGLDPEKVNVN 370 (435)
T ss_pred HHHcCCcccccceeehhHHHHHHHHHHHHHhCCCHHHcCCC
Confidence 56799999999999888877666677899999999998874
No 210
>PRK06157 acetyl-CoA acetyltransferase; Validated
Probab=72.51 E-value=6.3 Score=37.05 Aligned_cols=63 Identities=13% Similarity=-0.055 Sum_probs=37.4
Q ss_pred ccchhHHHhhhCC-CCceeeeecCcee--eee-CCCCCCHH--HHHHHHHHHHHHHcCCC--cCCccEEEEe
Q 023511 18 CVQQEALEAHDGA-SKGKYTIGLGQEC--MAF-CSEVEDVI--SMSLTAVTNLLEKYKID--PKQIGRLEVG 81 (281)
Q Consensus 18 ~v~~~~~~~~~~~-~~~~~~~gi~~r~--~~~-~~~~e~~~--~la~~Aa~~aL~~a~l~--~~dId~li~~ 81 (281)
+++.++.++.++. ++-||. |++... ... ..++.+.. .....|+++|++++|++ ++|||++=+.
T Consensus 224 vl~s~~~A~~l~~~~~v~I~-g~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~a~~~AGl~~~~~Did~~Ei~ 294 (398)
T PRK06157 224 IVTTPEIARALGKKDPVYVK-ALQLAVSNGWELQYNGWDGSYFPTTRIAARKAYREAGITDPREELSMAEVH 294 (398)
T ss_pred EEecHHHHHhhCCCCCeEEE-EEEEecccccccccccccccccHHHHHHHHHHHHHcCCCCchhcCCEEEEe
Confidence 4666777777765 555554 333221 000 00111222 23567999999999998 7999998653
No 211
>PRK08256 lipid-transfer protein; Provisional
Probab=72.00 E-value=3.1 Score=39.00 Aligned_cols=37 Identities=11% Similarity=0.053 Sum_probs=34.2
Q ss_pred HhhcCCCCCCCCcEEecCCCChhHHHHHHHhccchhh
Q 023511 230 KLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDF 266 (281)
Q Consensus 230 ~l~~~g~~~~did~~i~Hq~n~~i~~~~~~~lg~~~~ 266 (281)
+++++|++++|||.+-+|.+.....-..++.|||.+.
T Consensus 273 a~~~ag~~~~DiD~~ei~d~f~~~~l~~le~lg~~~~ 309 (391)
T PRK08256 273 VYEQAGIGPEDIDVVELHDCFSANELLTYEALGLCPE 309 (391)
T ss_pred HHHHcCCCHHHCCEEeeccCCcHHHHHHHHHcCCCCC
Confidence 4677999999999999999999999999999999976
No 212
>PRK08131 acetyl-CoA acetyltransferase; Provisional
Probab=71.75 E-value=4.9 Score=37.92 Aligned_cols=58 Identities=9% Similarity=0.007 Sum_probs=35.7
Q ss_pred ccchhHHHhhhCCCCc-eeeeecCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEEE
Q 023511 18 CVQQEALEAHDGASKG-KYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEV 80 (281)
Q Consensus 18 ~v~~~~~~~~~~~~~~-~~~~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~ 80 (281)
.+..++.++.++..+- +|. +.+... .. +.... .-...|+++||+++|++|+|||++-+
T Consensus 263 vl~s~~~a~~~~~~p~~~i~-g~~~~~--~~-~~~~~-~~~~~a~~~a~~~agl~~~did~~ei 321 (401)
T PRK08131 263 LIGSRAAGEKYGLKPMARIL-SSAAAG--VE-PRIMG-IGPVEAIKKALARAGLTLDDMDIIEI 321 (401)
T ss_pred EEeeHHHHHHcCCCceEEEE-EEEEec--cC-Ccccc-chHHHHHHHHHHHcCCCHHHCCeehh
Confidence 3555566666664433 443 333332 11 11111 24578999999999999999999864
No 213
>PRK06445 acetyl-CoA acetyltransferase; Provisional
Probab=71.54 E-value=3.6 Score=38.66 Aligned_cols=42 Identities=17% Similarity=0.242 Sum_probs=37.7
Q ss_pred HhhcCCCCCCCCcEEecCCCChhHHHHHHHhccchhhhhcCC
Q 023511 230 KLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNAR 271 (281)
Q Consensus 230 ~l~~~g~~~~did~~i~Hq~n~~i~~~~~~~lg~~~~~~~~~ 271 (281)
+|+++|++++|||++=+|-+.....-...+.|||.+..+|++
T Consensus 301 al~~Agl~~~dId~~e~~d~f~~~~l~~~e~lg~~~~~vN~~ 342 (394)
T PRK06445 301 ALEKAGLSVKDIDLWEINEAFAVVVLYAIKELGLDPETVNIK 342 (394)
T ss_pred HHHHcCCCHHHcCEEEecccchHHHHHHHHHhCCCccccCCC
Confidence 467799999999999999999999999999999988777766
No 214
>PRK06519 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=71.50 E-value=15 Score=34.70 Aligned_cols=29 Identities=7% Similarity=-0.143 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHcCCCcCCccEEEE-ecccC
Q 023511 56 MSLTAVTNLLEKYKIDPKQIGRLEV-GSETV 85 (281)
Q Consensus 56 la~~Aa~~aL~~a~l~~~dId~li~-~s~t~ 85 (281)
-..++.++||+++|+ |+|||+|.. +|.|+
T Consensus 281 ~~~~am~~AL~~Agl-~~~IdyI~ahgtgT~ 310 (398)
T PRK06519 281 DLEASLERLLKPAGG-LAAPTAVISGATGAH 310 (398)
T ss_pred HHHHHHHHHHHHCCC-cccCCEEEeCCCCCC
Confidence 457899999999999 899999883 34343
No 215
>PRK06501 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=70.90 E-value=14 Score=35.03 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHcCCCcCCccEEEEec
Q 023511 56 MSLTAVTNLLEKYKIDPKQIGRLEVGS 82 (281)
Q Consensus 56 la~~Aa~~aL~~a~l~~~dId~li~~s 82 (281)
-..+|.+++|+++|++|+|||++....
T Consensus 290 ~~~~ai~~AL~~agi~p~dId~i~~Hg 316 (425)
T PRK06501 290 PAIGAIRAALADAGLTPEQIDYINAHG 316 (425)
T ss_pred HHHHHHHHHHHHcCCCHHHcCEEEecC
Confidence 356889999999999999999998543
No 216
>PRK07314 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=70.55 E-value=11 Score=35.23 Aligned_cols=77 Identities=14% Similarity=0.171 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHcCCCcCCccEEE-EecccCCCCCcchHHHHHHHHhhcCCCCceee----eccc-ccchHHHHHHHHHHH
Q 023511 57 SLTAVTNLLEKYKIDPKQIGRLE-VGSETVIDKSKSIKTFLMQIFEKFGNTDIEGV----DSTN-ACYGGTAALFNCVNW 130 (281)
Q Consensus 57 a~~Aa~~aL~~a~l~~~dId~li-~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~----di~~-~C~g~~~aL~~A~~~ 130 (281)
..+|+++||+++|++|+|||++- .+|.|+.. .+.-..-+.+.++... .+++.- -++. .+++++..+..+...
T Consensus 278 ~~~a~~~Al~~agi~~~dId~v~~hgtgt~~~-d~~E~~al~~~~~~~~-~~~~v~s~k~~~Gh~~~AsG~~~~i~~~l~ 355 (411)
T PRK07314 278 AARAMKLALKDAGINPEDIDYINAHGTSTPAG-DKAETQAIKRVFGEHA-YKVAVSSTKSMTGHLLGAAGAVEAIFSVLA 355 (411)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEccccCCccc-cHHHHHHHHHHhcccC-CCCeeECccchhchhHHHHHHHHHHHHHHH
Confidence 46899999999999999999997 34333332 2333333444444211 112211 1233 344555555566666
Q ss_pred HHhCC
Q 023511 131 VESSS 135 (281)
Q Consensus 131 l~~g~ 135 (281)
++.+.
T Consensus 356 l~~~~ 360 (411)
T PRK07314 356 IRDQV 360 (411)
T ss_pred HhCCC
Confidence 66664
No 217
>cd00833 PKS polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations. PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits.
Probab=70.28 E-value=16 Score=34.11 Aligned_cols=81 Identities=16% Similarity=0.160 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHcCCCcCCccEEEEec-ccCCCCCcchHHHHHHHHhhcCC--CCce--eee--ccc-ccchHHHHHH
Q 023511 54 ISMSLTAVTNLLEKYKIDPKQIGRLEVGS-ETVIDKSKSIKTFLMQIFEKFGN--TDIE--GVD--STN-ACYGGTAALF 125 (281)
Q Consensus 54 ~~la~~Aa~~aL~~a~l~~~dId~li~~s-~t~~~~~p~~a~~i~~~l~~~g~--~~~~--~~d--i~~-~C~g~~~aL~ 125 (281)
.+-..+|+++||+++|++++|||.+.... .|+.. -+.-..-+...++..+. ...+ +.- ++. ..++++..|.
T Consensus 278 ~~~~~~a~~~al~~Agi~~~did~i~~hgtgt~~~-D~~E~~al~~~f~~~~~~~~~~~v~s~k~~~Gh~~~aag~~~l~ 356 (421)
T cd00833 278 GEAQAALIRRAYARAGVDPSDIDYVEAHGTGTPLG-DPIEVEALAKVFGGSRSADQPLLIGSVKSNIGHLEAAAGLAGLI 356 (421)
T ss_pred HHHHHHHHHHHHHHhCCCHHHCcEEEeeCCCCCCC-CHHHHHHHHHHHhccCCCCCceeeecCcCccccchhhhHHHHHH
Confidence 45667899999999999999999998443 33321 12222334444433210 1111 111 222 3444455555
Q ss_pred HHHHHHHhCC
Q 023511 126 NCVNWVESSS 135 (281)
Q Consensus 126 ~A~~~l~~g~ 135 (281)
.+...++.+.
T Consensus 357 ~~~~~l~~~~ 366 (421)
T cd00833 357 KVVLALEHGV 366 (421)
T ss_pred HHHHHHhcCC
Confidence 5666666664
No 218
>PRK07801 acetyl-CoA acetyltransferase; Provisional
Probab=69.89 E-value=3.8 Score=38.30 Aligned_cols=48 Identities=15% Similarity=0.126 Sum_probs=40.1
Q ss_pred HhhcCCCCCCCCcEEecCCCChhHHHHHHHhccchhhhhcCC--Cccccc
Q 023511 230 KLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNAR--LPSFLH 277 (281)
Q Consensus 230 ~l~~~g~~~~did~~i~Hq~n~~i~~~~~~~lg~~~~~~~~~--~~~~~~ 277 (281)
+++++|++++|||++=+|-+...+.-...+.|||.+...|++ .-.|+|
T Consensus 289 a~~~agi~~~did~~e~~d~Fa~~~~~~~e~lG~~~~pvN~~GG~l~~Gh 338 (382)
T PRK07801 289 ALEKTGLSIDDIDVVEINEAFAPVVLAWLKETGADPAKVNPNGGAIALGH 338 (382)
T ss_pred HHHHcCCCHHHcCEeeecccchHHHHHHHHHhCCCchhcCCCcchhhhcC
Confidence 467899999999999999999999999999999988777665 444444
No 219
>COG3425 PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism]
Probab=69.82 E-value=10 Score=35.34 Aligned_cols=97 Identities=10% Similarity=-0.036 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcC---CCCceee-eccc-ccchHHHHHHH
Q 023511 52 DVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFG---NTDIEGV-DSTN-ACYGGTAALFN 126 (281)
Q Consensus 52 ~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g---~~~~~~~-di~~-~C~g~~~aL~~ 126 (281)
.-..-...|++..+++.|+.|+|.|.+++.+-.+- .|--+ +..++... .+..... .++| .|.+...+|..
T Consensus 206 ~Y~~~~~~a~~~~~~k~gls~~dfdy~vfH~P~~k--~~~ka---~k~l~~~~e~v~~~l~~~~~vGN~YtgS~~L~Las 280 (377)
T COG3425 206 AYFKHVENAAKGYMEKTGLSPDDFDYIVFHQPNGK--FPKKA---AKSLGFKEEQVKPGLVYPQRIGNTYTGSLLLGLAS 280 (377)
T ss_pred HHHHHHHHHHHHHHHHhCCChhhhCeEEecCCCCc--hHHHH---HHHhCccHhhcCccchhhhhcCcccchhHHHHHHH
Confidence 35667789999999999999999999999753332 23222 23333321 1233333 4766 78777777655
Q ss_pred HHHHHHhCCCCCCeEEEEEeecccccCCCCccccCcceEEEEEc
Q 023511 127 CVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVG 170 (281)
Q Consensus 127 A~~~l~~g~~~~~~aLVV~~e~~s~~~~~~~~~fGDGAaA~ll~ 170 (281)
.-.-.. . +++++|++ -||-||++-..+
T Consensus 281 ~L~~a~--~-~G~rIl~~--------------SYGSGa~s~~fs 307 (377)
T COG3425 281 LLDNAK--L-PGDRILLF--------------SYGSGAGSEAFS 307 (377)
T ss_pred HHhhcC--C-CCCEEEEE--------------eeCCCcceeEEE
Confidence 544443 2 45888884 467788776655
No 220
>PRK06954 acetyl-CoA acetyltransferase; Provisional
Probab=69.42 E-value=2.8 Score=39.39 Aligned_cols=42 Identities=10% Similarity=0.139 Sum_probs=35.6
Q ss_pred HhhcCCCCCCCCcEEecCCCChhHHHHHHHhccchhhhhcCC
Q 023511 230 KLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNAR 271 (281)
Q Consensus 230 ~l~~~g~~~~did~~i~Hq~n~~i~~~~~~~lg~~~~~~~~~ 271 (281)
+|+++|++++|||+|=+|-+.....-..++.|||.+...+++
T Consensus 304 al~~agl~~~Did~~ei~d~fa~~~l~~~e~lg~~~~~vN~~ 345 (397)
T PRK06954 304 LFEKNGWRAAEVDLFEINEAFAVVTMAAMKEHGLPHEKVNVN 345 (397)
T ss_pred HHHHcCCCHHHCCEEehhhHHHHHHHHHHHHhCCCcccCCcC
Confidence 467899999999999999988777777789999988776665
No 221
>PLN02787 3-oxoacyl-[acyl-carrier-protein] synthase II
Probab=69.40 E-value=14 Score=36.31 Aligned_cols=76 Identities=9% Similarity=0.111 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHcCCCcCCccEEE-EecccCCCCCcchHHHHHHHHhhcCCCCceeee----ccc-ccchHHHHHHHHHHH
Q 023511 57 SLTAVTNLLEKYKIDPKQIGRLE-VGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVD----STN-ACYGGTAALFNCVNW 130 (281)
Q Consensus 57 a~~Aa~~aL~~a~l~~~dId~li-~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~d----i~~-~C~g~~~aL~~A~~~ 130 (281)
..+|.++||+++|++|+|||+|- .+|.|+.. -+.-..-|.+.++.. +.++.-. ++. -+++++..+..+...
T Consensus 407 ~~~am~~AL~~AGl~p~dIdyInaHGTGT~~g-D~~E~~Ai~~~Fg~~--~~~pV~S~Ks~iGH~~gAAGa~eli~~~la 483 (540)
T PLN02787 407 VILCIEKALAQSGVSKEDVNYINAHATSTKAG-DLKEYQALMRCFGQN--PELRVNSTKSMIGHLLGAAGAVEAIATVQA 483 (540)
T ss_pred HHHHHHHHHHHcCCCHHHCcEEEccCccCCCC-CHHHHHHHHHHhCCC--CCceeeCCCCCcCCCcccchHHHHHHHHHH
Confidence 46899999999999999999987 44444432 223333344554421 1122111 222 334444444555556
Q ss_pred HHhCC
Q 023511 131 VESSS 135 (281)
Q Consensus 131 l~~g~ 135 (281)
|+.|.
T Consensus 484 l~~g~ 488 (540)
T PLN02787 484 IRTGW 488 (540)
T ss_pred HhcCC
Confidence 66653
No 222
>PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=68.25 E-value=22 Score=32.89 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHcCCCcCCccEEEEe
Q 023511 54 ISMSLTAVTNLLEKYKIDPKQIGRLEVG 81 (281)
Q Consensus 54 ~~la~~Aa~~aL~~a~l~~~dId~li~~ 81 (281)
....-.+.+++|+++|++++|||.+++.
T Consensus 241 ~~~~~~~i~~~L~~~gl~~~did~~v~H 268 (353)
T PRK12880 241 LECEPKSFKEILEFSKVDEKDIAFHLFH 268 (353)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEC
Confidence 3444568899999999999999999975
No 223
>PRK06504 acetyl-CoA acetyltransferase; Provisional
Probab=68.07 E-value=4.5 Score=38.00 Aligned_cols=42 Identities=7% Similarity=0.073 Sum_probs=37.5
Q ss_pred HhhcCCCCCCCCcEEecCCCChhHHHHHHHhccchhhhhcCC
Q 023511 230 KLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNAR 271 (281)
Q Consensus 230 ~l~~~g~~~~did~~i~Hq~n~~i~~~~~~~lg~~~~~~~~~ 271 (281)
+++++|++++|||.+=+|-+.....-...+.|||.+..+|++
T Consensus 297 a~~~agl~~~Did~~Ei~d~Fa~~~l~~~e~lG~~~~pvN~~ 338 (390)
T PRK06504 297 ALKKAGMKIDDIDLYEVNEAFASVPLAWLKATGADPERLNVN 338 (390)
T ss_pred HHHHcCCCHHHCCEEEecccchHHHHHHHHHhCCCCCCcCCC
Confidence 467799999999999999999999889999999988777665
No 224
>PTZ00050 3-oxoacyl-acyl carrier protein synthase; Provisional
Probab=68.02 E-value=21 Score=33.75 Aligned_cols=27 Identities=11% Similarity=0.150 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHH-cCCCcCCccEEEEe
Q 023511 55 SMSLTAVTNLLEK-YKIDPKQIGRLEVG 81 (281)
Q Consensus 55 ~la~~Aa~~aL~~-a~l~~~dId~li~~ 81 (281)
.-..+|+++||++ +|++|+|||+|-..
T Consensus 283 ~~~~~ai~~Al~~~Agi~~~dId~ie~h 310 (421)
T PTZ00050 283 RGARRCMENALKDGANININDVDYVNAH 310 (421)
T ss_pred HHHHHHHHHHHHhccCCChhhCCEEECC
Confidence 4567899999999 99999999999843
No 225
>smart00825 PKS_KS Beta-ketoacyl synthase. The structure of beta-ketoacyl synthase is similar to that of the thiolase family and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains.
Probab=67.97 E-value=16 Score=34.25 Aligned_cols=32 Identities=16% Similarity=0.225 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHcCCCcCCccEEEEe-cccC
Q 023511 54 ISMSLTAVTNLLEKYKIDPKQIGRLEVG-SETV 85 (281)
Q Consensus 54 ~~la~~Aa~~aL~~a~l~~~dId~li~~-s~t~ 85 (281)
......|+++||+++|++|+|||.+... |.|+
T Consensus 278 ~~~~~~a~~~al~~Agl~~~dId~i~~h~tgt~ 310 (424)
T smart00825 278 GPAQARLIRQALARAGVDPADVDYVEAHGTGTP 310 (424)
T ss_pred HHHHHHHHHHHHHHhCCCHHHccEEEeeCCCCC
Confidence 4556789999999999999999999844 4343
No 226
>PRK08170 acetyl-CoA acetyltransferase; Provisional
Probab=67.86 E-value=7.3 Score=37.02 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHcCCCcCCccEEEEe
Q 023511 57 SLTAVTNLLEKYKIDPKQIGRLEVG 81 (281)
Q Consensus 57 a~~Aa~~aL~~a~l~~~dId~li~~ 81 (281)
...|+++||+++|++|+|||++=+.
T Consensus 309 ~~~a~~~al~~aGl~~~did~~ei~ 333 (426)
T PRK08170 309 PVHAATPLLQRHGLTLEDLDLWEIN 333 (426)
T ss_pred HHHHHHHHHHHcCCCHHHcCEEEec
Confidence 5689999999999999999998653
No 227
>TIGR01835 HMG-CoA-S_prok 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade. This clade of hydroxymethylglutaryl-CoA (HMG-CoA) synthases is found in a limited spectrum of mostly gram-positive bacteria which make isopentenyl pyrophosphate (IPP) via the mevalonate pathway. This pathway is found primarily in eukaryotes and archaea, but the bacterial homologs are distinct, having aparrently diverged after being laterally transferred from an early eukaryote. HMG-CoA synthase is the first step in the pathway and joins acetyl-CoA with acetoacetyl-CoA with the release of one molecule of CoA. The Borellia sequence may have resulted from a separate lateral transfer event.
Probab=67.76 E-value=13 Score=34.59 Aligned_cols=29 Identities=3% Similarity=-0.007 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHcCCCcCCccEEEEec
Q 023511 54 ISMSLTAVTNLLEKYKIDPKQIGRLEVGS 82 (281)
Q Consensus 54 ~~la~~Aa~~aL~~a~l~~~dId~li~~s 82 (281)
.+...++.++.|+++|++++|||.+++..
T Consensus 204 ~~~~~~~~~~~l~~~g~~~~did~~i~H~ 232 (379)
T TIGR01835 204 LNAFENAWNDYAKRTGLSLADFAAFCFHV 232 (379)
T ss_pred HHHHHHHHHHHHHHhCCCHHHcCEEEECC
Confidence 44566888999999999999999999865
No 228
>PRK06333 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=67.73 E-value=15 Score=34.71 Aligned_cols=46 Identities=15% Similarity=0.198 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHcCCCcCCccEEE-EecccCCCCCcchHHHHHHHHh
Q 023511 55 SMSLTAVTNLLEKYKIDPKQIGRLE-VGSETVIDKSKSIKTFLMQIFE 101 (281)
Q Consensus 55 ~la~~Aa~~aL~~a~l~~~dId~li-~~s~t~~~~~p~~a~~i~~~l~ 101 (281)
.-..+|+++||+++|++|+|||+|- .+|.|+.. -+.-..-+.+.++
T Consensus 288 ~~~~~a~~~Al~~Agi~p~dId~i~~hgtgt~~~-D~~E~~al~~~fg 334 (424)
T PRK06333 288 EGARRAMLIALRQAGIPPEEVQHLNAHATSTPVG-DLGEVAAIKKVFG 334 (424)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEeccCCCCccc-hHHHHHHHHHHhC
Confidence 4567899999999999999999997 33333321 2233333445444
No 229
>PRK12404 stage V sporulation protein AD; Provisional
Probab=66.84 E-value=15 Score=33.72 Aligned_cols=39 Identities=8% Similarity=0.023 Sum_probs=27.3
Q ss_pred HHhhcCCCCCCCCcEEecCCCC-hhHHH-HHHHhccchhhh
Q 023511 229 EKLEGKQFSLSNADYFVFHSPY-NKLVQ-KSFARLLFNDFM 267 (281)
Q Consensus 229 ~~l~~~g~~~~did~~i~Hq~n-~~i~~-~~~~~lg~~~~~ 267 (281)
++|+++|++++|||+++..... ..+.. .+.+.||+..+.
T Consensus 64 ~AL~kAGI~~~DID~i~vGdL~nQ~ipssfvar~LGIP~~g 104 (334)
T PRK12404 64 RAIEKAKLRKEDIQFFLAGDLMNQITPTSFAARTLGIPYLG 104 (334)
T ss_pred HHHHHcCCCHHHCCEEEEEecCCCcCcHHHHHHHhCCCccc
Confidence 4678899999999999995543 22222 667788865433
No 230
>PRK06059 lipid-transfer protein; Provisional
Probab=66.04 E-value=6.6 Score=36.87 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHcCCCcCCccEEEEec
Q 023511 57 SLTAVTNLLEKYKIDPKQIGRLEVGS 82 (281)
Q Consensus 57 a~~Aa~~aL~~a~l~~~dId~li~~s 82 (281)
...|++++++++|++++|||++=+.-
T Consensus 275 ~~~a~~~a~~~agl~~~Did~~El~d 300 (399)
T PRK06059 275 KDQILDAAYAEAGIGPEDLSLAEVYD 300 (399)
T ss_pred HHHHHHHHHHHcCCCHHHCcEEeecc
Confidence 35789999999999999999997543
No 231
>TIGR02446 FadI fatty oxidation complex, beta subunit FadI. This subunit of the FadJI complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit, and YfcY. This protein is almost always located adjacent to FadJ (TIGR02440). The FadJI complex is needed for anaerobic beta-oxidation of short-chain fatty acids in E. coli.
Probab=65.97 E-value=6.2 Score=37.61 Aligned_cols=24 Identities=8% Similarity=0.083 Sum_probs=21.5
Q ss_pred HHHHHHHHHHcCCCcCCccEEEEe
Q 023511 58 LTAVTNLLEKYKIDPKQIGRLEVG 81 (281)
Q Consensus 58 ~~Aa~~aL~~a~l~~~dId~li~~ 81 (281)
..|+++||+++|++++|||++=+.
T Consensus 314 ~~a~~~al~~Agl~~~Did~~Ei~ 337 (430)
T TIGR02446 314 SYATPLALQRAGLALSDLTLIDMH 337 (430)
T ss_pred HHHHHHHHHHcCCCHHHCCEEEec
Confidence 579999999999999999998654
No 232
>KOG1406 consensus Peroxisomal 3-ketoacyl-CoA-thiolase P-44/SCP2 [Lipid transport and metabolism]
Probab=65.80 E-value=8 Score=34.32 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCccEEEEeccc
Q 023511 53 VISMSLTAVTNLLEKYKIDPKQIGRLEVGSET 84 (281)
Q Consensus 53 ~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t 84 (281)
-.||...|++++.++.|++|+||+.|-..-|.
T Consensus 270 gfdm~~~aa~~l~aksgltpndvqvielhdcf 301 (408)
T KOG1406|consen 270 GFDMTRLAAKRLFAKSGLTPNDVQVIELHDCF 301 (408)
T ss_pred cchHHHHHHHHHHHHcCCCcccceEEEeeccc
Confidence 36899999999999999999999999876663
No 233
>PLN02836 3-oxoacyl-[acyl-carrier-protein] synthase
Probab=65.08 E-value=17 Score=34.53 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHcCCCcCCccEEEE
Q 023511 55 SMSLTAVTNLLEKYKIDPKQIGRLEV 80 (281)
Q Consensus 55 ~la~~Aa~~aL~~a~l~~~dId~li~ 80 (281)
+-..+|+++||+++|++|+|||+|-.
T Consensus 299 ~~~~~a~~~Al~~Agi~~~dId~ve~ 324 (437)
T PLN02836 299 RGAVLAMTRALQQSGLHPNQVDYVNA 324 (437)
T ss_pred HHHHHHHHHHHHHcCCCHhHcCEEEc
Confidence 44578899999999999999999873
No 234
>PRK09116 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=64.50 E-value=25 Score=33.09 Aligned_cols=46 Identities=17% Similarity=0.197 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHcCCCcCCccEEE-EecccCCCCCcchHHHHHHHHh
Q 023511 55 SMSLTAVTNLLEKYKIDPKQIGRLE-VGSETVIDKSKSIKTFLMQIFE 101 (281)
Q Consensus 55 ~la~~Aa~~aL~~a~l~~~dId~li-~~s~t~~~~~p~~a~~i~~~l~ 101 (281)
+-..++.+++|++++++|+|||.+. .+|.|+.. -+.-..-|.+.++
T Consensus 275 ~~~~~ai~~AL~~Agi~p~dId~I~~Hgtgt~~~-D~~E~~Ai~~~fg 321 (405)
T PRK09116 275 ETMQIAMELALKDAGLAPEDIGYVNAHGTATDRG-DIAESQATAAVFG 321 (405)
T ss_pred HHHHHHHHHHHHHhCCCHHHcCEEECcCccCCCC-CHHHHHHHHHHhC
Confidence 4456899999999999999999998 44444332 3444444555554
No 235
>KOG1390 consensus Acetyl-CoA acetyltransferase [Lipid transport and metabolism]
Probab=64.39 E-value=2.8 Score=38.10 Aligned_cols=41 Identities=17% Similarity=0.301 Sum_probs=36.9
Q ss_pred HhhcCCCCCCCCcEEecCCCChhHHHHHHHhccchhhhhcC
Q 023511 230 KLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNA 270 (281)
Q Consensus 230 ~l~~~g~~~~did~~i~Hq~n~~i~~~~~~~lg~~~~~~~~ 270 (281)
+|+++||+.+|||+|=+..+..-..-...|+||+++..+++
T Consensus 303 ~lk~aG~~~sdVd~~EiNEAFs~v~lA~iK~LgldP~kVNv 343 (396)
T KOG1390|consen 303 ALKKAGLEQSDVDYWEINEAFSVVVLANIKKLGLDPSKVNV 343 (396)
T ss_pred HHHHcCcchhhhhHHhhhhhhhHHHHHHHHHhCCCHhhccC
Confidence 46779999999999999999888888999999999998875
No 236
>PRK06365 acetyl-CoA acetyltransferase; Provisional
Probab=63.73 E-value=9.1 Score=36.46 Aligned_cols=29 Identities=14% Similarity=0.109 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHcCCC--cCCccEEEEecc
Q 023511 55 SMSLTAVTNLLEKYKID--PKQIGRLEVGSE 83 (281)
Q Consensus 55 ~la~~Aa~~aL~~a~l~--~~dId~li~~s~ 83 (281)
+....|+++|++++|++ ++|||++=+.-+
T Consensus 293 ~~~~~a~~~a~~~AGl~~~~~DiD~~Ei~D~ 323 (430)
T PRK06365 293 RAGRMAAKEAYEMAGITDPLNDLDLIELHDA 323 (430)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHCCEEEeecC
Confidence 34568999999999997 799999976543
No 237
>PF00195 Chal_sti_synt_N: Chalcone and stilbene synthases, N-terminal domain; InterPro: IPR001099 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2.3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyse the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group [].; GO: 0016746 transferase activity, transferring acyl groups, 0009058 biosynthetic process; PDB: 3EUO_B 3EUT_C 3EUQ_D 3E1H_A 3AWK_A 3AWJ_A 2H84_A 3A5S_A 3A5Q_B 3A5R_A ....
Probab=62.87 E-value=11 Score=32.75 Aligned_cols=54 Identities=15% Similarity=0.052 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcEEecCC----CChhHHHHHHHhccchh
Q 023511 210 QTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHS----PYNKLVQKSFARLLFND 265 (281)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~did~~i~Hq----~n~~i~~~~~~~lg~~~ 265 (281)
+..|.+.......+..+ ++|+++|++++||+++|+=. ..+-+--.++++||++.
T Consensus 93 ~~~~~~~a~~L~~~Aa~--~AL~~~g~~~~dIthlv~vs~TG~~~PglD~~l~~~LgL~~ 150 (226)
T PF00195_consen 93 NALYAEEAPPLAEEAAR--KALAEAGLDPSDITHLVTVSCTGIAAPGLDARLINRLGLRP 150 (226)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHTS-GGGECEEEEEESSSSECS-HHHHHHHHHT--T
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHcCCCCcccceEEEEecCCcCCCchhHHHHhcCCCCC
Confidence 35665544443333322 46899999999999999654 44455568899999865
No 238
>PLN03169 chalcone synthase family protein; Provisional
Probab=62.84 E-value=46 Score=31.23 Aligned_cols=81 Identities=16% Similarity=0.116 Sum_probs=44.7
Q ss_pred HHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCC--Cce----ee-eccc-ccchHHHHHHHHHH
Q 023511 58 LTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNT--DIE----GV-DSTN-ACYGGTAALFNCVN 129 (281)
Q Consensus 58 ~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~--~~~----~~-di~~-~C~g~~~aL~~A~~ 129 (281)
...++++|+++|++++|||-+.+.- .|+....+....+.+|.+ .+. .+ +.+| ++++...+|+.+..
T Consensus 284 ~~~i~~~L~~~gl~~~did~~~~v~------Hq~n~~il~~v~~~Lgl~~ek~~~s~~~l~~~GNtsSasip~~L~~~~~ 357 (391)
T PLN03169 284 EGFCKKLMKKAGLVEKDYNDLFWAV------HPGGPAILNRLEKKLKLAPEKLECSRRALMDYGNVSSNTIVYVLEYMRE 357 (391)
T ss_pred HHHHHHHHHHcCCCCCCCCcceEEe------cCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCchHhHHHHHHHHHHH
Confidence 4456889999999999998433221 133344444555555543 222 12 3555 77777778876542
Q ss_pred H--HHhCCCCCCeEEEEE
Q 023511 130 W--VESSSWDGRYGLVVC 145 (281)
Q Consensus 130 ~--l~~g~~~~~~aLVV~ 145 (281)
- ++... +++++|+++
T Consensus 358 ~~~~~~~~-~gd~~ll~a 374 (391)
T PLN03169 358 ELKKKGEE-DEEWGLILA 374 (391)
T ss_pred hhcccCCC-CCcEEEEEE
Confidence 1 21001 236776665
No 239
>PLN03168 chalcone synthase; Provisional
Probab=62.25 E-value=9.5 Score=35.81 Aligned_cols=53 Identities=8% Similarity=-0.046 Sum_probs=36.3
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHhhcCCCCCCCCcEEecCCCCh----hHHHHHHHhccchh
Q 023511 210 QTCYLMALDTC-YKCLCSKYEKLEGKQFSLSNADYFVFHSPYN----KLVQKSFARLLFND 265 (281)
Q Consensus 210 ~~~~~~~~~~~-~~~~~~~~~~l~~~g~~~~did~~i~Hq~n~----~i~~~~~~~lg~~~ 265 (281)
.+.|.+...++ .+... ++|+++|++++|||++|+...+. .+--.+.++||+++
T Consensus 94 ~~~~~~~a~~La~~Aa~---~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl~~ 151 (389)
T PLN03168 94 HDIVVVQVPKLAAEAAQ---KAIKEWGGRKSDITHIVFATTSGVNMPGADHALAKLLGLKP 151 (389)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHcCCCHHHCCEEEEECCCCCCCccHHHHHHHHhCcCC
Confidence 45665544444 33333 57899999999999998875443 33347888999865
No 240
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=59.14 E-value=13 Score=28.62 Aligned_cols=49 Identities=16% Similarity=0.141 Sum_probs=31.1
Q ss_pred HHHHHHHcCCCcCCccEEEEecccCCC--CCcchHHHHHHHHhhcCCCCceeeeccc
Q 023511 61 VTNLLEKYKIDPKQIGRLEVGSETVID--KSKSIKTFLMQIFEKFGNTDIEGVDSTN 115 (281)
Q Consensus 61 a~~aL~~a~l~~~dId~li~~s~t~~~--~~p~~a~~i~~~l~~~g~~~~~~~di~~ 115 (281)
..+.+++.+++++||--++|+ .|+|- ..|+.+. +.+ .|..+++-++...
T Consensus 26 l~~ii~~N~l~~edivSv~FT-~T~DL~a~FPA~aa---R~~--~Gw~~Vplmc~qE 76 (117)
T TIGR01796 26 LTELMERNELTPEDLISVIFT-VTEDLHADFPAAAA---RGL--PGWTDVPVMCAQE 76 (117)
T ss_pred HHHHHHHcCCCHHHEEEEEEE-ecCcccccChHHHH---Hhc--cCCCCcceeccCc
Confidence 345668899999999999874 56653 3455444 433 2555666665543
No 241
>PLN03172 chalcone synthase family protein; Provisional
Probab=57.75 E-value=25 Score=33.10 Aligned_cols=53 Identities=9% Similarity=-0.013 Sum_probs=34.8
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHhhcCCCCCCCCcEEecCC----CChhHHHHHHHhccchh
Q 023511 210 QTCYLMALDT-CYKCLCSKYEKLEGKQFSLSNADYFVFHS----PYNKLVQKSFARLLFND 265 (281)
Q Consensus 210 ~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~did~~i~Hq----~n~~i~~~~~~~lg~~~ 265 (281)
.+.|.....+ ..+... ++|+++|++++|||++|+.. ..+.+--.+.++||+++
T Consensus 95 ~~~~~~~a~~La~~Aa~---~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LGl~~ 152 (393)
T PLN03172 95 QDMVVVEVPKLGKEAAA---KAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLKP 152 (393)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhCCCC
Confidence 3556544433 334443 46899999999999987444 23344457888999865
No 242
>cd00827 init_cond_enzymes "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes. They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues.
Probab=55.40 E-value=65 Score=28.72 Aligned_cols=86 Identities=13% Similarity=0.034 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCce-----eee-ccc-ccchHHHHH
Q 023511 52 DVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIE-----GVD-STN-ACYGGTAAL 124 (281)
Q Consensus 52 ~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~-----~~d-i~~-~C~g~~~aL 124 (281)
...+...++++++|++.+++ +|||+++...... |..-..+.+.++... .++. .++ +++ +|++...+|
T Consensus 220 ~~~~~~~~~~~~~l~~~~~~-~~i~~~~~h~~~~----~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~Gn~~sa~~~~~L 293 (324)
T cd00827 220 AAHKLIAKVVRKALDRAGLS-EDIDYFVPHQPNG----KKILEAVAKKLGGPP-EKASQTRWILLRRVGNMYAASILLGL 293 (324)
T ss_pred HHhHHHHHHHHHHHHHcccc-cccceeeccCchH----HHHHHHHHHHccchH-hhhccchhhHHHHhCchHHHHHHHHH
Confidence 34667788999999999999 9999888654322 022222334443211 1121 133 444 666666666
Q ss_pred HHHHHHHHhCCC-CCCeEEEEEe
Q 023511 125 FNCVNWVESSSW-DGRYGLVVCT 146 (281)
Q Consensus 125 ~~A~~~l~~g~~-~~~~aLVV~~ 146 (281)
..+. ..+.. +++++|+++.
T Consensus 294 ~~~~---~~~~~~~Gd~vl~~~~ 313 (324)
T cd00827 294 ASLL---ESGKLKAGDRVLLFSY 313 (324)
T ss_pred HHHH---hcCCCCCCCEEEEEEe
Confidence 6553 33321 4578888765
No 243
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=54.83 E-value=13 Score=28.47 Aligned_cols=27 Identities=22% Similarity=0.220 Sum_probs=18.2
Q ss_pred HhhcCCCCCCCCcEEecCCCChhHHHH
Q 023511 230 KLEGKQFSLSNADYFVFHSPYNKLVQK 256 (281)
Q Consensus 230 ~l~~~g~~~~did~~i~Hq~n~~i~~~ 256 (281)
+|+++|++++|||++..|-.+.+..+.
T Consensus 34 al~~agi~~~~I~~i~~hg~Gt~~~D~ 60 (119)
T PF02801_consen 34 ALADAGISPEDIDYIEAHGTGTPLGDA 60 (119)
T ss_dssp HHHHHTS-GGGEEEEE----SSHHHHH
T ss_pred HHhhhccccccceeeeeeccccccchh
Confidence 467789999999999999988887663
No 244
>PLN03170 chalcone synthase; Provisional
Probab=53.82 E-value=26 Score=33.08 Aligned_cols=54 Identities=9% Similarity=-0.050 Sum_probs=35.0
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHhhcCCCCCCCCcEEecCCC----ChhHHHHHHHhccchhh
Q 023511 210 QTCYLMALDTC-YKCLCSKYEKLEGKQFSLSNADYFVFHSP----YNKLVQKSFARLLFNDF 266 (281)
Q Consensus 210 ~~~~~~~~~~~-~~~~~~~~~~l~~~g~~~~did~~i~Hq~----n~~i~~~~~~~lg~~~~ 266 (281)
.+.|.....++ .+..+ ++|+++|++++|||++|+-.. ...+--.+.++||+++.
T Consensus 99 ~~~~~~~a~~La~~Aa~---~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl~~~ 157 (401)
T PLN03170 99 QDIVVVEVPKLGKAAAQ---KAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLGLRPS 157 (401)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhCcCcc
Confidence 35565544433 33433 578999999999999864432 23333478889998654
No 245
>PRK07103 polyketide beta-ketoacyl:acyl carrier protein synthase; Validated
Probab=53.50 E-value=9.7 Score=35.89 Aligned_cols=24 Identities=13% Similarity=0.333 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHcCCCcCCccEEEE
Q 023511 57 SLTAVTNLLEKYKIDPKQIGRLEV 80 (281)
Q Consensus 57 a~~Aa~~aL~~a~l~~~dId~li~ 80 (281)
..++.++||+++|++|+|||++-.
T Consensus 283 ~~~a~~~Al~~Agi~~~dId~v~~ 306 (410)
T PRK07103 283 EMRVIRAALRRAGLGPEDIDYVNP 306 (410)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEc
Confidence 368999999999999999999873
No 246
>TIGR02445 fadA fatty oxidation complex, beta subunit FadA. This subunit of the FadBA complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit. This protein is almost always located adjacent to FadB (TIGR02437). The FadBA complex is the major complex active for beta-oxidation of fatty acids in E. coli.
Probab=53.37 E-value=12 Score=35.01 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=35.1
Q ss_pred HhhcCCCCCCCCcEEecCCCChhHHHHHHHhccchh---hhhcCC
Q 023511 230 KLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFND---FMRNAR 271 (281)
Q Consensus 230 ~l~~~g~~~~did~~i~Hq~n~~i~~~~~~~lg~~~---~~~~~~ 271 (281)
+++++|++++|||++=+|-+.....-...+.|||-+ ...|++
T Consensus 289 al~~AGi~p~DId~~Ei~daFa~~~l~~~e~lg~~~~g~~~vN~~ 333 (385)
T TIGR02445 289 ALKRAGLSISDIDVFELNEAFAAQALPCLKDLGLLDKMDEKVNLN 333 (385)
T ss_pred HHHHcCCCHHHcCEEEEccccHHHHHHHHHHcCCCCCCCCCcCCC
Confidence 467799999999999999999998889999999854 344444
No 247
>PF07736 CM_1: Chorismate mutase type I; InterPro: IPR008243 Chorismate mutase (CM; 5.4.99.5 from EC) catalyses the reaction at the branch point of the biosynthetic pathway leading to the three aromatic amino acids, phenylalanine, tryptophan and tyrosine (chorismic acid is the last common intermediate, and CM leads to the L-phenylalanine/L-tyrosine branch). It is part of the shikimate pathway, which is present only in bacteria, fungi and plants. This entry represents a family of monofunctional (non-fused) chorismate mutases from Gram-positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus). They are monofunctional, homotrimeric, nonallosteric enzymes and are not regulated by the end-product aromatic amino acids. The three types of CM are AroQ class, Prokaryotic type (e.g., IPR008239 from INTERPRO amongst others); AroQ class, Eukaryotic type (IPR008238 from INTERPRO); and AroH class. They fall into two structural folds (AroQ class and AroH class) which are completely unrelated []. The two types of the AroQ structural class (the Escherichia coli CM dimer and the yeast CM monomer) can be structurally superimposed, and the topology of the four-helix bundle forming the active site is conserved []. For additional information please see [, , , , , , ].; PDB: 2CHS_K 2CHT_L 1COM_J 1FNJ_A 1FNK_A 1DBF_C 1UI9_A 1ODE_A 1UFY_A 1XHO_C ....
Probab=53.19 E-value=12 Score=29.03 Aligned_cols=48 Identities=15% Similarity=0.154 Sum_probs=28.3
Q ss_pred HHHHHHHcCCCcCCccEEEEecccCC--CCCcchHHHHHHHHhhcCCCCceeeecc
Q 023511 61 VTNLLEKYKIDPKQIGRLEVGSETVI--DKSKSIKTFLMQIFEKFGNTDIEGVDST 114 (281)
Q Consensus 61 a~~aL~~a~l~~~dId~li~~s~t~~--~~~p~~a~~i~~~l~~~g~~~~~~~di~ 114 (281)
.++.+++.+++++||--++|+ .|+| ...|+.+. +.+ .|..+++-|+..
T Consensus 26 l~~i~~~N~l~~~dIvSi~FT-~T~DL~a~fPA~a~---R~~--~g~~~Vpl~c~~ 75 (118)
T PF07736_consen 26 LEEILERNELSPEDIVSIIFT-VTPDLDAAFPAAAA---REL--PGWDDVPLMCAQ 75 (118)
T ss_dssp HHHHHHHTT--GGGEEEEEEE-E-TT--SS-TCHHH---HHT--TTGTTSEEEEEE
T ss_pred HHHHHHHcCCCHHHEEEEEEE-eCCCcCccChHHHH---Hcc--CCCCccceeccC
Confidence 445668899999999999874 5666 34566665 544 144556555543
No 248
>cd00826 nondecarbox_cond_enzymes nondecarboxylating condensing enzymes; In general, thiolases catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=52.70 E-value=8.7 Score=36.07 Aligned_cols=36 Identities=14% Similarity=0.143 Sum_probs=32.8
Q ss_pred HhhcCCCCCCCCcEEecCCCChhHHHHHHHhccchh
Q 023511 230 KLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFND 265 (281)
Q Consensus 230 ~l~~~g~~~~did~~i~Hq~n~~i~~~~~~~lg~~~ 265 (281)
+|+++|++++|||.|=+|-+.....-...+.|||.+
T Consensus 278 al~~Agi~~~DID~~Ei~d~Fa~~~l~~~e~lgl~~ 313 (393)
T cd00826 278 ALEKAGLGIGDLDLIEAHDAFAANACATNEALGLCP 313 (393)
T ss_pred HHHHcCCCHHHcCeeehhhhhHHHHHHHHHHhCCCc
Confidence 467799999999999999999888888999999886
No 249
>PLN03173 chalcone synthase; Provisional
Probab=52.10 E-value=28 Score=32.69 Aligned_cols=53 Identities=9% Similarity=-0.011 Sum_probs=34.9
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHhhcCCCCCCCCcEEecCCCC----hhHHHHHHHhccchh
Q 023511 210 QTCYLMALDTC-YKCLCSKYEKLEGKQFSLSNADYFVFHSPY----NKLVQKSFARLLFND 265 (281)
Q Consensus 210 ~~~~~~~~~~~-~~~~~~~~~~l~~~g~~~~did~~i~Hq~n----~~i~~~~~~~lg~~~ 265 (281)
.+.|.+...++ .+... ++|+++|++++|||++|..... ..+--.+.++||++.
T Consensus 95 ~~~~~~~a~~La~~Aa~---~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~LGl~~ 152 (391)
T PLN03173 95 QDMVVVEVPKLGKEAAA---KAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRS 152 (391)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHhCCCc
Confidence 35565544433 33333 4689999999999998766432 333346888999865
No 250
>PLN02644 acetyl-CoA C-acetyltransferase
Probab=48.70 E-value=12 Score=35.12 Aligned_cols=42 Identities=14% Similarity=0.197 Sum_probs=36.2
Q ss_pred HhhcCCCCCCCCcEEecCCCChhHHHHHHHhccchhhhhcCC
Q 023511 230 KLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNAR 271 (281)
Q Consensus 230 ~l~~~g~~~~did~~i~Hq~n~~i~~~~~~~lg~~~~~~~~~ 271 (281)
+|+++|++++|||++=+|-+.....-...+.|||.....+++
T Consensus 300 al~~Agi~~~Did~~Ei~d~f~~~~l~~~e~lg~~~~~vN~~ 341 (394)
T PLN02644 300 ALKHAGLEASQVDYYEINEAFSVVALANQKLLGLDPEKVNVH 341 (394)
T ss_pred HHHHcCCCHHHCCEEEeCcHHHHHHHHHHHHhCCCccccCCC
Confidence 467899999999999999998888888899999987766665
No 251
>PRK08947 fadA 3-ketoacyl-CoA thiolase; Reviewed
Probab=47.81 E-value=16 Score=34.19 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=32.7
Q ss_pred HhhcCCCCCCCCcEEecCCCChhHHHHHHHhccchh
Q 023511 230 KLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFND 265 (281)
Q Consensus 230 ~l~~~g~~~~did~~i~Hq~n~~i~~~~~~~lg~~~ 265 (281)
+++++|++++|||++=+|-+.....-..++.|||-+
T Consensus 291 al~~Agl~~~DId~~El~d~F~~~~l~~~e~lg~~~ 326 (387)
T PRK08947 291 ALKRAGLSISDIDVFELNEAFAAQSLPCLKDLGLLD 326 (387)
T ss_pred HHHHcCCCHHHCCEEEecccchHHHHHHHHHcCCCC
Confidence 467799999999999999999999999999999855
No 252
>PRK09604 UGMP family protein; Validated
Probab=47.61 E-value=79 Score=28.92 Aligned_cols=30 Identities=10% Similarity=0.181 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCccEEEEec
Q 023511 53 VISMSLTAVTNLLEKYKIDPKQIGRLEVGS 82 (281)
Q Consensus 53 ~~~la~~Aa~~aL~~a~l~~~dId~li~~s 82 (281)
-.+......+++|++++++++|||.|.++.
T Consensus 51 H~~~l~~~i~~~L~~~~~~~~did~iavt~ 80 (332)
T PRK09604 51 HVENIVPLIEEALKEAGLTLEDIDAIAVTA 80 (332)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEEec
Confidence 466778889999999999999999999754
No 253
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=47.56 E-value=28 Score=26.92 Aligned_cols=39 Identities=15% Similarity=0.209 Sum_probs=27.9
Q ss_pred eecCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEec
Q 023511 37 IGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGS 82 (281)
Q Consensus 37 ~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s 82 (281)
.|+|.|+ + ...+...++.+++|++.++++.+|+.|....
T Consensus 4 ~GiGcrr------~-~~~~~i~~ai~~~l~~~~~~~~~i~~iasi~ 42 (121)
T PF01890_consen 4 LGIGCRR------G-APAEEIEEAIEQALAEAGLSPRSIAAIASID 42 (121)
T ss_dssp EEEEE-S------S---HHHHHHHHHHHHHHCT--GGGEEEEEESS
T ss_pred EEeCcCC------C-CCHHHHHHHHHHHHHHcCCChhhccEEEecc
Confidence 5788776 2 3556788999999999999999999996543
No 254
>TIGR03285 methan_mark_14 putative methanogenesis marker protein 14. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=47.25 E-value=33 Score=31.85 Aligned_cols=33 Identities=15% Similarity=0.172 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCccEEEEec
Q 023511 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGS 82 (281)
Q Consensus 50 ~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s 82 (281)
.|+..+|......+++++|+++.+|+|.+|=.|
T Consensus 62 resV~elV~dtl~e~~k~A~l~i~DL~FVVRST 94 (445)
T TIGR03285 62 RESVAELVKDTLKESLKKAGLDIDDLDFVVRST 94 (445)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChhhccEEEecc
Confidence 477999999999999999999999999998433
No 255
>PLN03171 chalcone synthase-like protein; Provisional
Probab=46.71 E-value=39 Score=31.80 Aligned_cols=53 Identities=6% Similarity=-0.116 Sum_probs=33.9
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHhhcCCCCCCCCcEEecCCCC----hhHHHHHHHhccchh
Q 023511 210 QTCYLMALDTC-YKCLCSKYEKLEGKQFSLSNADYFVFHSPY----NKLVQKSFARLLFND 265 (281)
Q Consensus 210 ~~~~~~~~~~~-~~~~~~~~~~l~~~g~~~~did~~i~Hq~n----~~i~~~~~~~lg~~~ 265 (281)
...|.+...++ .+..+ ++|+++|++++|||++|+.... +-.--.+.++||++.
T Consensus 101 ~~~~~~~a~~la~~Aa~---~aL~~ag~~~~dId~li~~t~t~~~~P~~a~~v~~~LGl~~ 158 (399)
T PLN03171 101 LDIAADAVPELAAEAAK---KAIAEWGRPAADITHLVVTTNSGAHIPGVDFRLVPLLGLRP 158 (399)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHcCCCHHHCCEEEEEcCCCCCCCchHHHHHHHhCCCc
Confidence 35565544433 33333 4689999999999999873222 223336788999864
No 256
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=44.07 E-value=47 Score=29.04 Aligned_cols=86 Identities=14% Similarity=0.084 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcc-hHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHHHHHh
Q 023511 55 SMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKS-IKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVES 133 (281)
Q Consensus 55 ~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~-~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~~l~~ 133 (281)
+-...-++.+|++++++++|||.+-++ -.|-...|- ..+.+++.+.++=. .+-+-+ |.|.|-+. +. +.+ +
T Consensus 51 ~~il~Lv~~al~ea~v~~~diD~icyT-KGPGmgaPL~~vaivaRtlsllw~--kPlv~V-NHCigHIE---MG-R~i-T 121 (336)
T KOG2708|consen 51 AWILGLVKQALEEAGVTSDDIDCICYT-KGPGMGAPLSVVAIVARTLSLLWN--KPLVGV-NHCIGHIE---MG-REI-T 121 (336)
T ss_pred HHHHHHHHHHHHHcCCChhhCCEEEEc-CCCCCCCchhhHHHHHHHHHHHhC--CCcccc-hhhhhhhh---hc-cee-c
Confidence 344555789999999999999998764 455555553 33445666666421 221222 45655432 11 112 2
Q ss_pred CCCCCCeEEEEEeeccc
Q 023511 134 SSWDGRYGLVVCTDSAV 150 (281)
Q Consensus 134 g~~~~~~aLVV~~e~~s 150 (281)
|. ....+|-|++-...
T Consensus 122 gA-~nPvvLYvSGGNTQ 137 (336)
T KOG2708|consen 122 GA-QNPVVLYVSGGNTQ 137 (336)
T ss_pred cC-CCCEEEEEeCCceE
Confidence 22 22567777665544
No 257
>PLN02377 3-ketoacyl-CoA synthase
Probab=43.19 E-value=48 Score=32.35 Aligned_cols=36 Identities=8% Similarity=0.146 Sum_probs=28.0
Q ss_pred HHhhcCCCCCCCCcEEecCC----CChhHHHHHHHhccch
Q 023511 229 EKLEGKQFSLSNADYFVFHS----PYNKLVQKSFARLLFN 264 (281)
Q Consensus 229 ~~l~~~g~~~~did~~i~Hq----~n~~i~~~~~~~lg~~ 264 (281)
++|+++|++++|||.+|... +.+-+--.+.++||++
T Consensus 182 ~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LGlr 221 (502)
T PLN02377 182 NLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYKLR 221 (502)
T ss_pred HHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhCCC
Confidence 46899999999999999832 3344555788899987
No 258
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=42.34 E-value=39 Score=26.32 Aligned_cols=40 Identities=10% Similarity=0.080 Sum_probs=30.9
Q ss_pred eeeecCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEe
Q 023511 35 YTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVG 81 (281)
Q Consensus 35 ~~~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~ 81 (281)
+..|||.|+ +. ..+...++.+++|++.++.+.+|+.|...
T Consensus 4 ~~vGIGcr~------~~-~~e~i~~ai~~~L~~~~l~~~si~~lasi 43 (126)
T PRK07027 4 VALGIGCRR------GV-PAEQIEAAIRAALAQRPLASADVRVVATL 43 (126)
T ss_pred EEEeeccCC------CC-CHHHHHHHHHHHHHHcCCCHHHhheeEeh
Confidence 346888876 22 34456889999999999999999999644
No 259
>PRK08304 stage V sporulation protein AD; Validated
Probab=40.54 E-value=1.9e+02 Score=26.69 Aligned_cols=83 Identities=13% Similarity=0.148 Sum_probs=46.9
Q ss_pred HHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCC--------CCceeee-----cc-----cccch
Q 023511 58 LTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGN--------TDIEGVD-----ST-----NACYG 119 (281)
Q Consensus 58 ~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~--------~~~~~~d-----i~-----~~C~g 119 (281)
+.-..+=|++.|.+|+|=|+||++ |- .---...+.+.|...|. +..+-|| +. .||++
T Consensus 211 ~dti~~h~~d~~~~~~~yDli~tG----Dl-g~vG~~i~~~ll~~~g~~~~~~~~DcG~~iy~~~~q~~~aGgSGc~csa 285 (337)
T PRK08304 211 ADTIQQHFKDTGRSPEDYDLIVTG----DL-GRVGREILKELLKEEGYDIGDNYNDCGLMIYDSEQQDVFAGGSGCACSA 285 (337)
T ss_pred HHHHHHHHHHcCCChhhccEEEEc----ch-HHHHHHHHHHHHHHhCCChhhcccccCeEEeccCCCcccCCCcccchhH
Confidence 344456678999999999999854 32 11112223344444442 1234454 21 25554
Q ss_pred HHHHHHHHHHHHHhCCCCCCeEEEEEeec
Q 023511 120 GTAALFNCVNWVESSSWDGRYGLVVCTDS 148 (281)
Q Consensus 120 ~~~aL~~A~~~l~~g~~~~~~aLVV~~e~ 148 (281)
-+..=+ -...++.|.+ +++|+|+.-.
T Consensus 286 ~v~~~~-~~~~~~~g~~--~rvl~v~tGa 311 (337)
T PRK08304 286 VVTYGY-LLKELQKGKL--KRVLVVATGA 311 (337)
T ss_pred HHHHHH-HHHHHhcCCc--eEEEEEEchh
Confidence 444333 3344567766 9999998754
No 260
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=40.12 E-value=47 Score=30.03 Aligned_cols=114 Identities=19% Similarity=0.159 Sum_probs=64.9
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCcCC-ccEEEEecccCCCCCcchHHHHHHHHh-hcCCCCceeeecccccchHHHHHHH
Q 023511 49 EVEDVISMSLTAVTNLLEKYKIDPKQ-IGRLEVGSETVIDKSKSIKTFLMQIFE-KFGNTDIEGVDSTNACYGGTAALFN 126 (281)
Q Consensus 49 ~~e~~~~la~~Aa~~aL~~a~l~~~d-Id~li~~s~t~~~~~p~~a~~i~~~l~-~~g~~~~~~~di~~~C~g~~~aL~~ 126 (281)
+.+...+=..++.++|++++|+++.+ |..|.+. .++.. .|..--.+...++ ..+ ..+..|-+++--.+.+
T Consensus 41 g~~~~~~rie~~i~~A~~k~g~d~~~~lr~lgL~-lSg~d-~e~~~~~lv~~~R~~fp-s~ae~~~v~sDa~~sl----- 112 (336)
T KOG1794|consen 41 GSTTCASRIEDMIREAKEKAGWDKKGPLRSLGLG-LSGTD-QEDKNRKLVTEFRDKFP-SVAENFYVTSDADGSL----- 112 (336)
T ss_pred CchHHHHHHHHHHHHHHhhcCCCccCccceeeee-cccCC-chhHHHHHHHHHHHhcc-chhheeeeehhHHHHH-----
Confidence 34556777778899999999999999 7777654 34443 2443333334443 222 1233455544211111
Q ss_pred HHHHHHhCCCCCCeEEEEEeeccc-c--cCC------CCccccCcceEEEEEccCC
Q 023511 127 CVNWVESSSWDGRYGLVVCTDSAV-Y--AEG------PARPTGGAAAVVMLVGPDA 173 (281)
Q Consensus 127 A~~~l~~g~~~~~~aLVV~~e~~s-~--~~~------~~~~~fGDGAaA~ll~~~~ 173 (281)
..-...+ .+..||+-+....- . .|. ....+.|||+.|..+++..
T Consensus 113 -~a~t~g~--~~GiVLiaGTgs~crl~~~DGs~~~~ggwg~~iGd~GSaywia~~A 165 (336)
T KOG1794|consen 113 -AAATPGG--EGGIVLIAGTGSNCRLVNPDGSEKGAGGWGHMIGDGGSAYWIARQA 165 (336)
T ss_pred -hhcCCCC--CCcEEEEecCCceeEEECCCCCccCCCCCCCccCCCcchhhhhhhh
Confidence 1111112 23677777665533 1 221 2467999999999998865
No 261
>COG3424 BcsA Predicted naringenin-chalcone synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=40.01 E-value=28 Score=31.68 Aligned_cols=54 Identities=15% Similarity=0.137 Sum_probs=37.5
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHhhcCCCCCCCCcEEecCCCChh----HHHHHHHhccchhh
Q 023511 210 QTCYLM-ALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNK----LVQKSFARLLFNDF 266 (281)
Q Consensus 210 ~~~~~~-~~~~~~~~~~~~~~~l~~~g~~~~did~~i~Hq~n~~----i~~~~~~~lg~~~~ 266 (281)
++.|.+ ++.-.++..+ ++|+..++.++|||.+++-..... +--.++++||+++.
T Consensus 69 N~ifie~a~~l~v~a~r---~aL~~~~l~pedId~vv~vtsTG~~~Ps~dari~~~Lgl~p~ 127 (356)
T COG3424 69 NEIFIEEAVPLGVDALR---RALDGSPLRPEDIDAVVTVTSTGLATPSLDARIVGELGLSPD 127 (356)
T ss_pred hhhHHHHHHHHHHHHHH---HHhccCCCCHHHCcEEEEEeeccccCCChhHHHHhhcCCCCc
Confidence 455654 3333444444 679999999999999998875543 33477889998764
No 262
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=37.46 E-value=40 Score=29.81 Aligned_cols=29 Identities=17% Similarity=0.155 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHcCCCcCCccEEEEec
Q 023511 54 ISMSLTAVTNLLEKYKIDPKQIGRLEVGS 82 (281)
Q Consensus 54 ~~la~~Aa~~aL~~a~l~~~dId~li~~s 82 (281)
++......+++|++++++++|||.|.++.
T Consensus 30 ~~~L~~~i~~~l~~~~~~~~did~iavt~ 58 (268)
T PF00814_consen 30 SENLPPLIEELLKEAGISLSDIDAIAVTR 58 (268)
T ss_dssp HHHHHHHHHHHHHHHTS-GGGESEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEec
Confidence 55667889999999999999999999864
No 263
>TIGR03725 bact_YeaZ universal bacterial protein YeaZ. This family describes a protein family, YeaZ, that appears to be universal in bacteria, but whose function is unknown. This family is related to the gcp (glycoprotease) protein family, also universal in bacteria and unknown in function. In Gram-positive lineages, members of these two related families often belong to the same operon, along with the ribosomal-protein-alanine acetyltransferase gene. Members of this family may occur as fusions with gcp or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI.
Probab=37.41 E-value=37 Score=28.54 Aligned_cols=31 Identities=16% Similarity=0.321 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHHHHcCCCcCCccEEEEec
Q 023511 52 DVISMSLTAVTNLLEKYKIDPKQIGRLEVGS 82 (281)
Q Consensus 52 ~~~~la~~Aa~~aL~~a~l~~~dId~li~~s 82 (281)
..++......+++|++++++++|||.|+++.
T Consensus 32 ~h~~~l~~~i~~~l~~~~~~~~~i~~iav~~ 62 (202)
T TIGR03725 32 NHSEILLPMIEELLAEAGLSLQDLDAIAVGV 62 (202)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEec
Confidence 4667777889999999999999999999864
No 264
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=36.69 E-value=43 Score=31.76 Aligned_cols=48 Identities=17% Similarity=0.118 Sum_probs=30.4
Q ss_pred HHHHHHHH----HHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcC
Q 023511 53 VISMSLTA----VTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFG 104 (281)
Q Consensus 53 ~~~la~~A----a~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g 104 (281)
...+|..| .+-+|+++|++++|||.|+.+-..+.+.-|..+ ..+|+++
T Consensus 302 ~~qlAKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a----~~iGLlP 353 (412)
T PF14574_consen 302 EFQLAKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESA----IRIGLLP 353 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHH----HHTTSS-
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHH----hhcCCCC
Confidence 45555544 356789999999999999999888888666555 4666654
No 265
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=36.50 E-value=1.6e+02 Score=24.64 Aligned_cols=85 Identities=6% Similarity=-0.041 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHHH----HHcCCCcCCccEEEEecccCCCCCcchHHH--HHHHHhhcCCCCceeeecccccchHHHHHH
Q 023511 52 DVISMSLTAVTNLL----EKYKIDPKQIGRLEVGSETVIDKSKSIKTF--LMQIFEKFGNTDIEGVDSTNACYGGTAALF 125 (281)
Q Consensus 52 ~~~~la~~Aa~~aL----~~a~l~~~dId~li~~s~t~~~~~p~~a~~--i~~~l~~~g~~~~~~~di~~~C~g~~~aL~ 125 (281)
+-.+.+.+++...+ ++ ...+.|++|.++...+.-..|.+..+ +...++. .+.. |=..+..||.
T Consensus 24 nRL~aak~~i~~~~~~f~~~--np~~~vGlv~fag~~a~v~~plT~D~~~~~~~L~~--------i~~~-g~~~l~~AL~ 92 (187)
T cd01452 24 TRFQAQADAVNLICQAKTRS--NPENNVGLMTMAGNSPEVLVTLTNDQGKILSKLHD--------VQPK-GKANFITGIQ 92 (187)
T ss_pred CHHHHHHHHHHHHHHHHHhc--CCCccEEEEEecCCceEEEECCCCCHHHHHHHHHh--------CCCC-CcchHHHHHH
Confidence 34556666666553 43 33468999998875555445544332 2222222 2222 4457889999
Q ss_pred HHHHHHHhCCCC-C-Ce-EEEEEee
Q 023511 126 NCVNWVESSSWD-G-RY-GLVVCTD 147 (281)
Q Consensus 126 ~A~~~l~~g~~~-~-~~-aLVV~~e 147 (281)
+|...++..... . ++ +++++++
T Consensus 93 ~A~~~L~~~~~~~~~~rivi~v~S~ 117 (187)
T cd01452 93 IAQLALKHRQNKNQKQRIVAFVGSP 117 (187)
T ss_pred HHHHHHhcCCCcCCcceEEEEEecC
Confidence 999999754311 1 25 5555655
No 266
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=36.39 E-value=37 Score=30.91 Aligned_cols=27 Identities=11% Similarity=0.213 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHcCCCcCCccEEEEec
Q 023511 56 MSLTAVTNLLEKYKIDPKQIGRLEVGS 82 (281)
Q Consensus 56 la~~Aa~~aL~~a~l~~~dId~li~~s 82 (281)
......+++|+++|++++|||.|.++.
T Consensus 48 ~l~~~i~~~l~~~~~~~~did~Iavt~ 74 (322)
T TIGR03722 48 VAPKLIKEALEEAGVSLEDIDAVAFSQ 74 (322)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEec
Confidence 344559999999999999999999764
No 267
>PRK14878 UGMP family protein; Provisional
Probab=35.66 E-value=37 Score=30.94 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHcCCCcCCccEEEEec
Q 023511 56 MSLTAVTNLLEKYKIDPKQIGRLEVGS 82 (281)
Q Consensus 56 la~~Aa~~aL~~a~l~~~dId~li~~s 82 (281)
.-..+.+++|+++|++++|||.|.++.
T Consensus 47 ~l~~~i~~~l~~a~~~~~did~Iavt~ 73 (323)
T PRK14878 47 VAPELLRKALEKAGISIEDIDAVAVSQ 73 (323)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEec
Confidence 344889999999999999999998754
No 268
>cd02185 AroH Chorismate mutase (AroH) is one of at least five chorismate-utilizing enzymes present in microorganisms that catalyze the rearrangement of chorismate to prephenic acid, the first committed step in the biosynthesis of aromatic amino acids. In prokaryotes, chorismate mutase may be fused to prephenate dehydratase, prephenate dehydrogenase, or 3-deoxy-D-arabino-heptulosonat-7-phosphate (DAHP) as part of a bifunctional enzyme. The AroH domain forms a homotrimer with three-fold symmetry.
Probab=35.22 E-value=84 Score=24.29 Aligned_cols=48 Identities=13% Similarity=0.071 Sum_probs=30.6
Q ss_pred HHHHHHHcCCCcCCccEEEEecccCCC--CCcchHHHHHHHHhhcCCCCceeeecc
Q 023511 61 VTNLLEKYKIDPKQIGRLEVGSETVID--KSKSIKTFLMQIFEKFGNTDIEGVDST 114 (281)
Q Consensus 61 a~~aL~~a~l~~~dId~li~~s~t~~~--~~p~~a~~i~~~l~~~g~~~~~~~di~ 114 (281)
..+.+++.+++++||--++|+ .|+|- ..|+.+. +.++ |..+++-++..
T Consensus 26 l~~i~~~N~l~~edivSv~FT-~T~DL~a~FPA~aa---R~~~--~~~~Vplmc~q 75 (117)
T cd02185 26 LEEIIERNNIKPEDIISVIFT-VTPDLDAAFPAKAA---RELG--GWKYVPLMCAQ 75 (117)
T ss_pred HHHHHHHcCCCHHHEEEEEEE-eCCcccccChHHHH---HhcC--CCCCcceeecC
Confidence 345668899999999999874 56653 3455544 5443 33456555544
No 269
>PRK05788 cobalamin biosynthesis protein CbiG; Validated
Probab=35.18 E-value=51 Score=30.06 Aligned_cols=42 Identities=21% Similarity=0.240 Sum_probs=32.1
Q ss_pred ceeeeecCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEe
Q 023511 33 GKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVG 81 (281)
Q Consensus 33 ~~~~~gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~ 81 (281)
..+..|+|.|+ + ...+...+|.+++|+++|+++++|+.|...
T Consensus 193 ~~l~vGIGcrr------g-~~~e~i~~ai~~~L~~~~i~~~~i~~iati 234 (315)
T PRK05788 193 KNVVLGIGCRK------G-VSAEEIAEAVERALEALNIDPRAVKAIASI 234 (315)
T ss_pred CeEEEeeccCC------C-CCHHHHHHHHHHHHHHcCCCHHHccEEeee
Confidence 33446888876 2 234556889999999999999999998644
No 270
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=34.70 E-value=54 Score=30.24 Aligned_cols=27 Identities=11% Similarity=0.118 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHcCCCcCCccEEEEe
Q 023511 55 SMSLTAVTNLLEKYKIDPKQIGRLEVG 81 (281)
Q Consensus 55 ~la~~Aa~~aL~~a~l~~~dId~li~~ 81 (281)
+-.....+++|+++|++.+|||+|-++
T Consensus 52 e~i~~li~~al~eA~~~~~dID~IA~T 78 (342)
T COG0533 52 ENIPPLIEEALAEAGVSLEDIDAIAVT 78 (342)
T ss_pred HHHHHHHHHHHHHcCCCcccCCEEEEe
Confidence 445567889999999999999999874
No 271
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=33.74 E-value=43 Score=31.03 Aligned_cols=30 Identities=13% Similarity=0.125 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHcCCCcCCccEEEEecccCCC
Q 023511 57 SLTAVTNLLEKYKIDPKQIGRLEVGSETVID 87 (281)
Q Consensus 57 a~~Aa~~aL~~a~l~~~dId~li~~s~t~~~ 87 (281)
--+..++||+++++.|.|+|+|.++ ..|-.
T Consensus 86 i~~~iqral~aa~~~p~dldaIAVT-~gPGl 115 (405)
T KOG2707|consen 86 IPRLIQRALDAAGLSPKDLDAIAVT-RGPGL 115 (405)
T ss_pred HHHHHHHHHHHcCCCcccceeEEEe-cCCCc
Confidence 3467899999999999999999864 45543
No 272
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=33.33 E-value=53 Score=30.67 Aligned_cols=63 Identities=16% Similarity=0.152 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCc--------chHHHHHHHHhhcCCCCceeeeccc
Q 023511 52 DVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSK--------SIKTFLMQIFEKFGNTDIEGVDSTN 115 (281)
Q Consensus 52 ~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p--------~~a~~i~~~l~~~g~~~~~~~di~~ 115 (281)
....+-.+|++++++++++++++||+|=+.-.|-.+ .| +....|+...+..=..+...-|+..
T Consensus 68 ~lg~~~a~av~~~~~~~~l~~~~id~IgsHGQTv~H-~P~~~~TlQiG~~~~iA~~tgi~VV~DFR~~D~a~ 138 (365)
T PRK09585 68 ALGRLFAEAVNALLAEAGLSPEDIDAIGSHGQTVRH-RPGEGFTLQIGDGALIAELTGITVVADFRRRDVAA 138 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCccEEEeCCccccc-CCCCCCeEEcCCHHHHHHHHCcCEEecChHHHHhc
Confidence 356788899999999999999999999877666443 33 2455566655542112334445544
No 273
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=33.16 E-value=44 Score=30.17 Aligned_cols=30 Identities=10% Similarity=0.046 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCccEEEEec
Q 023511 53 VISMSLTAVTNLLEKYKIDPKQIGRLEVGS 82 (281)
Q Consensus 53 ~~~la~~Aa~~aL~~a~l~~~dId~li~~s 82 (281)
-.+......+++|++++++++|||.|.++.
T Consensus 48 H~~~l~~~i~~~l~~~~~~~~did~iav~~ 77 (305)
T TIGR00329 48 HAENIPPLLERALIESNVDKSEIDLIAYTQ 77 (305)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEEec
Confidence 456667789999999999999999999764
No 274
>PF09887 DUF2114: Uncharacterized protein conserved in archaea (DUF2114); InterPro: IPR008303 There are currently no experimental data for members of this group or their homologues. The exact function of this protein is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=32.54 E-value=86 Score=29.33 Aligned_cols=33 Identities=15% Similarity=0.142 Sum_probs=29.4
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcC-CccEEEEec
Q 023511 50 VEDVISMSLTAVTNLLEKYKIDPK-QIGRLEVGS 82 (281)
Q Consensus 50 ~e~~~~la~~Aa~~aL~~a~l~~~-dId~li~~s 82 (281)
.|+..+|......+++.+|+++.+ |+|.+|=.|
T Consensus 64 rEsV~elVrdtl~e~~k~A~l~i~~DL~FVVRST 97 (448)
T PF09887_consen 64 RESVAELVRDTLLESHKKAHLDIKKDLDFVVRST 97 (448)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccccceEEEeec
Confidence 478999999999999999999998 999999443
No 275
>PLN02192 3-ketoacyl-CoA synthase
Probab=31.98 E-value=91 Score=30.53 Aligned_cols=36 Identities=8% Similarity=0.140 Sum_probs=27.8
Q ss_pred HHhhcCCCCCCCCcEEecCC----CChhHHHHHHHhccch
Q 023511 229 EKLEGKQFSLSNADYFVFHS----PYNKLVQKSFARLLFN 264 (281)
Q Consensus 229 ~~l~~~g~~~~did~~i~Hq----~n~~i~~~~~~~lg~~ 264 (281)
++|+++|++++|||.+|... +.+-+--.+.+++|++
T Consensus 186 ~aL~kaGi~p~DIDiLIv~~S~~~~~PSlaa~I~n~lGlr 225 (511)
T PLN02192 186 QLLAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYKLR 225 (511)
T ss_pred HHHHHcCCCHHHCCEEEEECCCCCCCchHHHHHHHHhCCC
Confidence 46889999999999998653 3344555788899987
No 276
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=31.97 E-value=1.9e+02 Score=28.80 Aligned_cols=47 Identities=9% Similarity=0.212 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhh
Q 023511 54 ISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEK 102 (281)
Q Consensus 54 ~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~ 102 (281)
.+=..+.++++|+++++++++||.|+.+..+. .+|....++...++.
T Consensus 292 l~~i~~~i~~~L~~a~~~~~~id~ViLvGGss--riP~V~~~l~~~f~~ 338 (599)
T TIGR01991 292 VQKTLSICRRALRDAGLSVEEIKGVVLVGGST--RMPLVRRAVAELFGQ 338 (599)
T ss_pred HHHHHHHHHHHHHHcCCChhhCCEEEEECCcC--CChHHHHHHHHHhCC
Confidence 33455778899999999999999988654333 368888877777653
No 277
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=31.62 E-value=99 Score=27.88 Aligned_cols=38 Identities=18% Similarity=0.155 Sum_probs=30.3
Q ss_pred HHhhcCCCCCCCCcEEecCC----CChhHHHHHHHhccchhh
Q 023511 229 EKLEGKQFSLSNADYFVFHS----PYNKLVQKSFARLLFNDF 266 (281)
Q Consensus 229 ~~l~~~g~~~~did~~i~Hq----~n~~i~~~~~~~lg~~~~ 266 (281)
++|+++|++++|||.+|..- +.+-+-..+.+++|++..
T Consensus 93 ~LL~ktgv~p~dIdiLVvncs~f~ptPSLsamIvnr~~mr~d 134 (290)
T PF08392_consen 93 DLLAKTGVKPSDIDILVVNCSLFNPTPSLSAMIVNRYGMRSD 134 (290)
T ss_pred HHHHHcCCCHHHCCEEEEECcCCCcCCcHHHHHHHHhCCCcC
Confidence 45888999999999997654 566777788888888753
No 278
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=30.94 E-value=2.1e+02 Score=28.70 Aligned_cols=46 Identities=9% Similarity=0.203 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhh
Q 023511 55 SMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEK 102 (281)
Q Consensus 55 ~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~ 102 (281)
+=..+.++++|+++++.+++||.|+....+. .+|....++...++.
T Consensus 309 ~~~~~~i~~~L~~a~~~~~~i~~ViLvGGss--riP~v~~~l~~~fg~ 354 (616)
T PRK05183 309 KRTLLACRRALRDAGVEADEVKEVVMVGGST--RVPLVREAVGEFFGR 354 (616)
T ss_pred HHHHHHHHHHHHHcCCCcccCCEEEEECCcc--cChHHHHHHHHHhcc
Confidence 3345667899999999999999999654333 368888877777664
No 279
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=30.55 E-value=1.1e+02 Score=36.03 Aligned_cols=79 Identities=18% Similarity=0.219 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHcCCCcCCccEEE-EecccCCCCCcchHHHHHHHHhhcCC--CCce--ee--eccc-ccchHHHHHHHHH
Q 023511 57 SLTAVTNLLEKYKIDPKQIGRLE-VGSETVIDKSKSIKTFLMQIFEKFGN--TDIE--GV--DSTN-ACYGGTAALFNCV 128 (281)
Q Consensus 57 a~~Aa~~aL~~a~l~~~dId~li-~~s~t~~~~~p~~a~~i~~~l~~~g~--~~~~--~~--di~~-~C~g~~~aL~~A~ 128 (281)
-.++.++||+++|++|++||+|- .+|.|+.- -|.-..-+.+.++.... ..+. ++ .|+. -+++++.+|.-+.
T Consensus 317 q~~~i~~Al~~Agi~p~~I~yIeaHGTGT~~g-D~~E~~Al~~vf~~~~~~~~~~~vgSvKs~iGH~~~AAG~a~lik~~ 395 (2582)
T TIGR02813 317 QAKALKRAYDDAGFAPHTCGLIEAHGTGTAAG-DVAEFGGLVSVFSQDNDQKQHIALGSVKSQIGHTKSTAGTAGMIKAV 395 (2582)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEecCCCCCCC-CHHHHHHHHHHhcccccCCCCceeeccccccccchHhHHHHHHHHHH
Confidence 46899999999999999999987 33334321 24444445555543210 1121 11 2443 5777778887777
Q ss_pred HHHHhCCC
Q 023511 129 NWVESSSW 136 (281)
Q Consensus 129 ~~l~~g~~ 136 (281)
-.++.+..
T Consensus 396 lal~~~~i 403 (2582)
T TIGR02813 396 LALHHKVL 403 (2582)
T ss_pred HHHhcCCc
Confidence 77777644
No 280
>TIGR02845 spore_V_AD stage V sporulation protein AD. Bacillus and Clostridium species contain about 10 % dipicolinic acid (pyridine-2,6-dicarboxylic acid) by weight. This protein family, SpoVAD, belongs to the spoVA operon that is suggested to act in the transport of dipicolinic acid (DPA) from the mother cell, where DPA is synthesized, to the forespore, a process essential to sporulation. Members of this protein family are found, so far, in exactly those species believed capable of endospore formation.
Probab=29.66 E-value=96 Score=28.46 Aligned_cols=37 Identities=11% Similarity=0.028 Sum_probs=24.6
Q ss_pred HHhhcCCCCCCCCcEEecCCCC-hh-HHHHHHHhccchh
Q 023511 229 EKLEGKQFSLSNADYFVFHSPY-NK-LVQKSFARLLFND 265 (281)
Q Consensus 229 ~~l~~~g~~~~did~~i~Hq~n-~~-i~~~~~~~lg~~~ 265 (281)
++|+++|++++|||+++...-. .. .-..+.++||+..
T Consensus 60 ~ALekAGL~~~DID~IIvGdl~~Q~~~As~vA~~LGIP~ 98 (327)
T TIGR02845 60 LALKKANLKKDDVDFFLAGDLLNQIITANFVARDLGIPF 98 (327)
T ss_pred HHHHHcCCCHHHCCEEEEeCCCCcccHHHHHHHHhCCCE
Confidence 4578899999999999874321 11 1224667888643
No 281
>PRK13410 molecular chaperone DnaK; Provisional
Probab=29.43 E-value=1.3e+02 Score=30.47 Aligned_cols=47 Identities=11% Similarity=0.262 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHh
Q 023511 53 VISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFE 101 (281)
Q Consensus 53 ~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~ 101 (281)
..+-..+.++++|+++|+++++||.|+.+.-+. .+|....++...++
T Consensus 307 l~~r~~~~i~~~L~~ag~~~~dId~VvLVGGss--RiP~V~~~l~~~fg 353 (668)
T PRK13410 307 LLDRLLRPVKRALKDAGLSPEDIDEVVLVGGST--RMPMVQQLVRTLIP 353 (668)
T ss_pred HHHHHHHHHHHHHHHcCCChhhCcEEEEECCcc--ccHHHHHHHHHHcC
Confidence 344556678899999999999999888654332 36888877766655
No 282
>PLN02932 3-ketoacyl-CoA synthase
Probab=27.94 E-value=1.1e+02 Score=29.77 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=27.8
Q ss_pred HHhhcCCCCCCCCcEEecCC----CChhHHHHHHHhccch
Q 023511 229 EKLEGKQFSLSNADYFVFHS----PYNKLVQKSFARLLFN 264 (281)
Q Consensus 229 ~~l~~~g~~~~did~~i~Hq----~n~~i~~~~~~~lg~~ 264 (281)
++|+++|++++|||++|... +.+-+--.+.++||++
T Consensus 158 ~aL~~agi~p~dId~lIv~tst~~~~Pslaa~V~~~lGlr 197 (478)
T PLN02932 158 NLFRNTGISPSDIGILVVNSSTFNPTPSLSSILVNKFKLR 197 (478)
T ss_pred HHHHHcCCCHHHCCEEEEEccCCCCCCcHHHHHHHHhCCC
Confidence 46899999999999997654 3344555788899986
No 283
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=27.64 E-value=2.6e+02 Score=25.29 Aligned_cols=30 Identities=10% Similarity=0.123 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCccEEEEec
Q 023511 53 VISMSLTAVTNLLEKYKIDPKQIGRLEVGS 82 (281)
Q Consensus 53 ~~~la~~Aa~~aL~~a~l~~~dId~li~~s 82 (281)
-.+.....++++|++++++++|||.|.++.
T Consensus 49 H~~~l~~~i~~~l~~~~~~~~~id~iav~~ 78 (314)
T TIGR03723 49 HLEAIPPLIEEALAEAGLTLSDIDAIAVTA 78 (314)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEEec
Confidence 456777889999999999999999999864
No 284
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=27.36 E-value=1.5e+02 Score=29.90 Aligned_cols=46 Identities=11% Similarity=0.203 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhh
Q 023511 55 SMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEK 102 (281)
Q Consensus 55 ~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~ 102 (281)
+=....++++|+++++++++||.|+...-+ ..+|....++...++.
T Consensus 334 ~r~~~~v~~~L~~a~~~~~dId~VvLVGGs--sriP~V~~~l~~~fg~ 379 (657)
T PTZ00186 334 ERSIAPCKQCMKDAGVELKEINDVVLVGGM--TRMPKVVEEVKKFFQK 379 (657)
T ss_pred HHHHHHHHHHHHHcCCChhhCCEEEEECCc--ccChHHHHHHHHHhCC
Confidence 345567889999999999999998865432 2368888877777654
No 285
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=26.27 E-value=2.4e+02 Score=25.31 Aligned_cols=20 Identities=30% Similarity=0.527 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHcCCCcCCc
Q 023511 56 MSLTAVTNLLEKYKIDPKQI 75 (281)
Q Consensus 56 la~~Aa~~aL~~a~l~~~dI 75 (281)
....|..++|++.+++|+|.
T Consensus 11 ~i~~~~~~a~~~l~~~p~d~ 30 (287)
T TIGR02177 11 GILSALQRALAELNLDPEQV 30 (287)
T ss_pred HHHHHHHHHHHHhcCCCCCE
Confidence 45678999999999999874
No 286
>PLN02854 3-ketoacyl-CoA synthase
Probab=25.89 E-value=4.7e+02 Score=25.71 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHcCCCc------CCccEEEEe
Q 023511 57 SLTAVTNLLEKYKIDP------KQIGRLEVG 81 (281)
Q Consensus 57 a~~Aa~~aL~~a~l~~------~dId~li~~ 81 (281)
+...+++.|.++|+.+ +|||+++..
T Consensus 387 ~~~~i~~~L~~~gl~~~~pd~~~didhf~iH 417 (521)
T PLN02854 387 FVTLVRRKLLKAKVKPYIPDFKLAFEHFCIH 417 (521)
T ss_pred HHHHHHHHHHHcCCCccCCcccccCcEEEEC
Confidence 5667889999999997 689988753
No 287
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=25.71 E-value=71 Score=26.36 Aligned_cols=34 Identities=35% Similarity=0.489 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecc
Q 023511 50 VEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSE 83 (281)
Q Consensus 50 ~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~ 83 (281)
.++...=..+|.++++++.++++++|+.++++|+
T Consensus 32 ~~d~~~gi~~al~~l~~~~~~~~~~i~~v~~gTT 65 (176)
T PF05378_consen 32 PDDPAEGILEALDALLEESGIDPSDIDRVRHGTT 65 (176)
T ss_pred CcCHHHHHHHHHHhhhcccCCChhhCcEEEeccH
Confidence 3567777888899999999999999999999874
No 288
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=25.68 E-value=2.9e+02 Score=21.31 Aligned_cols=87 Identities=15% Similarity=0.061 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHHHHHh
Q 023511 54 ISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVES 133 (281)
Q Consensus 54 ~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~~l~~ 133 (281)
.+.+..++..+++...-.-+.+.++.|.+.......|.. ..+...+..+. + + ..++.+....+|..+..+++.
T Consensus 18 ~~~a~~~~~~l~~~~~~~~~~v~li~F~~~~~~~~~~~~-~~~~~~~~~l~--~---~-~~~ggT~l~~al~~a~~~l~~ 90 (152)
T cd01462 18 EEVAKAVALALLRIALAENRDTYLILFDSEFQTKIVDKT-DDLEEPVEFLS--G---V-QLGGGTDINKALRYALELIER 90 (152)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEEeCCCceEEecCCc-ccHHHHHHHHh--c---C-CCCCCcCHHHHHHHHHHHHHh
Confidence 455666666666554323457888877765111111111 11223333221 1 1 125778889999999999886
Q ss_pred CCCCCCeEEEEEeec
Q 023511 134 SSWDGRYGLVVCTDS 148 (281)
Q Consensus 134 g~~~~~~aLVV~~e~ 148 (281)
.. +.+..+|+-+|-
T Consensus 91 ~~-~~~~~ivliTDG 104 (152)
T cd01462 91 RD-PRKADIVLITDG 104 (152)
T ss_pred cC-CCCceEEEECCC
Confidence 53 224556665554
No 289
>PLN03184 chloroplast Hsp70; Provisional
Probab=25.50 E-value=1.4e+02 Score=30.18 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhh
Q 023511 54 ISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEK 102 (281)
Q Consensus 54 ~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~ 102 (281)
.+-..+.++++|++++++++|||.|+..--+. .+|....+|...++.
T Consensus 345 ~~r~~~~i~~~L~~a~~~~~dId~ViLvGGss--riP~V~~~i~~~fg~ 391 (673)
T PLN03184 345 LDRCKTPVENALRDAKLSFKDIDEVILVGGST--RIPAVQELVKKLTGK 391 (673)
T ss_pred HHHHHHHHHHHHHHcCCChhHccEEEEECCcc--ccHHHHHHHHHHhCC
Confidence 33445668899999999999999999654333 368888877777653
No 290
>PRK13411 molecular chaperone DnaK; Provisional
Probab=25.49 E-value=1e+02 Score=31.03 Aligned_cols=46 Identities=11% Similarity=0.329 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHh
Q 023511 54 ISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFE 101 (281)
Q Consensus 54 ~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~ 101 (281)
.+=..+.++++|+++++.+++||.|+...-+. .+|.....|...++
T Consensus 307 ~~~~~~~i~~~L~~a~~~~~~id~ViLvGGss--riP~v~~~l~~~f~ 352 (653)
T PRK13411 307 VEATIEPMQQALKDAGLKPEDIDRVILVGGST--RIPAVQEAIQKFFG 352 (653)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCcEEEEECCCC--CcchHHHHHHHHcC
Confidence 33356678899999999999999888654333 36888887777664
No 291
>PLN00415 3-ketoacyl-CoA synthase
Probab=25.06 E-value=1.8e+02 Score=28.07 Aligned_cols=36 Identities=8% Similarity=0.138 Sum_probs=26.5
Q ss_pred HHhhcCCCCCCCCcEEecCCCC----hhHHHHHHHhccch
Q 023511 229 EKLEGKQFSLSNADYFVFHSPY----NKLVQKSFARLLFN 264 (281)
Q Consensus 229 ~~l~~~g~~~~did~~i~Hq~n----~~i~~~~~~~lg~~ 264 (281)
++|+++|++++|||++|..... +-.--.+.+++|++
T Consensus 144 ~aL~~aGi~p~dID~LIvs~T~~~~~Pslaa~l~~~LGLr 183 (466)
T PLN00415 144 SLFKKTGIEPREVGIFIVNCSLFNPNPSLSSMIVNRYKLK 183 (466)
T ss_pred HHHHHcCCCHHHCCEEEEECcCCCCCchHHHHHHHHhCCC
Confidence 3468899999999999865432 33344678899987
No 292
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=24.90 E-value=1.8e+02 Score=24.85 Aligned_cols=32 Identities=9% Similarity=0.231 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHHHHcCCCcCCccEEEEec
Q 023511 51 EDVISMSLTAVTNLLEKYKIDPKQIGRLEVGS 82 (281)
Q Consensus 51 e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s 82 (281)
..-.+......+++|.++|+...|||.|+++.
T Consensus 35 r~hse~l~~~i~~ll~~~~~~~~dld~iav~~ 66 (220)
T COG1214 35 RNHAERLMPMIDELLKEAGLSLQDLDAIAVAK 66 (220)
T ss_pred ccHHHHHHHHHHHHHHHcCCCHHHCCEEEEcc
Confidence 34667888899999999999999999999864
No 293
>COG4401 AroH Chorismate mutase [Amino acid transport and metabolism]
Probab=24.77 E-value=2.1e+02 Score=21.99 Aligned_cols=59 Identities=17% Similarity=-0.015 Sum_probs=35.6
Q ss_pred HHHHHHHHHH----HHHcCCCcCCccEEEEecccCCC--CCcchHHHHHHHHhhcCCCCceeeecccccch
Q 023511 55 SMSLTAVTNL----LEKYKIDPKQIGRLEVGSETVID--KSKSIKTFLMQIFEKFGNTDIEGVDSTNACYG 119 (281)
Q Consensus 55 ~la~~Aa~~a----L~~a~l~~~dId~li~~s~t~~~--~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g 119 (281)
+=..+|.+.+ +++.-.+|+|+--+++ |.|+|- ..|+-+. + .+.|..+++.+++..-|.-
T Consensus 18 eeI~~at~eLl~~i~~~N~~~pedv~sv~~-svT~Dl~A~FPAka~---R--~~~gw~~Vpv~~~Qem~V~ 82 (125)
T COG4401 18 EEILDATKELLEEIEEENITDPEDVVSVIL-SVTEDLDAIFPAKAV---R--ELPGWEYVPVMCMQEMPVP 82 (125)
T ss_pred HHHHHHHHHHHHHHHHhcCCChhheeeEEE-EeccchhhhCcHHHh---c--cCCCCcccceeeeeeccCC
Confidence 3344454444 4567889999977775 456653 3344322 2 2356677888888876653
No 294
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=24.52 E-value=3.9e+02 Score=21.83 Aligned_cols=91 Identities=8% Similarity=0.070 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHHHc--CCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHH
Q 023511 52 DVISMSLTAVTNLLEKY--KIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVN 129 (281)
Q Consensus 52 ~~~~la~~Aa~~aL~~a--~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~ 129 (281)
+-.+-+..++++.+++- .-.-+.|+++++.+..+....|-+...- ..+..+. .. +. ..|-...-.||..|..
T Consensus 24 tRl~~ak~~~~~fi~~~~~~~~~~~vglv~f~~~~a~~~~PlT~D~~-~~~~~L~--~~--~~-~~G~t~l~~aL~~A~~ 97 (183)
T cd01453 24 SRLAVVLKLLELFIEEFFDQNPISQLGIISIKNGRAEKLTDLTGNPR-KHIQALK--TA--RE-CSGEPSLQNGLEMALE 97 (183)
T ss_pred hHHHHHHHHHHHHHHHHhhcCccccEEEEEEcCCccEEEECCCCCHH-HHHHHhh--cc--cC-CCCchhHHHHHHHHHH
Confidence 34566666776666542 1233569999994334444455433221 1222221 11 11 2344788999999999
Q ss_pred HHHhCC-CCCCeEEEEEeec
Q 023511 130 WVESSS-WDGRYGLVVCTDS 148 (281)
Q Consensus 130 ~l~~g~-~~~~~aLVV~~e~ 148 (281)
+++... ...+++||+.+|.
T Consensus 98 ~l~~~~~~~~~~iiil~sd~ 117 (183)
T cd01453 98 SLKHMPSHGSREVLIIFSSL 117 (183)
T ss_pred HHhcCCccCceEEEEEEcCC
Confidence 997521 1125677776653
No 295
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=24.47 E-value=93 Score=24.25 Aligned_cols=83 Identities=16% Similarity=0.212 Sum_probs=46.3
Q ss_pred ccchhHHHhhhCC-CCceeee--ecCceeeeeCCCCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHH
Q 023511 18 CVQQEALEAHDGA-SKGKYTI--GLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKT 94 (281)
Q Consensus 18 ~v~~~~~~~~~~~-~~~~~~~--gi~~r~~~~~~~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~ 94 (281)
+|..+.+.+.+.. -+..+.. .+|.-++ -..+. -..==.+.++++|++-|++|+.|+.+.....-++-..-...-
T Consensus 40 rvn~~fvl~Al~~GaDGV~v~GC~~geCHy--~~GN~-ka~rR~~~lke~l~elgie~eRv~~~wiSa~E~ekf~e~~~e 116 (132)
T COG1908 40 RVNPEFVLKALRKGADGVLVAGCKIGECHY--ISGNY-KAKRRMELLKELLKELGIEPERVRVLWISAAEGEKFAETINE 116 (132)
T ss_pred ccCHHHHHHHHHcCCCeEEEecccccceee--eccch-HHHHHHHHHHHHHHHhCCCcceEEEEEEehhhHHHHHHHHHH
Confidence 4566666665422 2233333 3444442 22222 223335678899999999999999999766555543333333
Q ss_pred HHHHHHhhcC
Q 023511 95 FLMQIFEKFG 104 (281)
Q Consensus 95 ~i~~~l~~~g 104 (281)
++ ..+..+|
T Consensus 117 fv-~~i~~lG 125 (132)
T COG1908 117 FV-ERIKELG 125 (132)
T ss_pred HH-HHHHHhC
Confidence 33 4444444
No 296
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=24.27 E-value=77 Score=24.57 Aligned_cols=30 Identities=17% Similarity=0.335 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHcCCCcCCccEEEEecc
Q 023511 54 ISMSLTAVTNLLEKYKIDPKQIGRLEVGSE 83 (281)
Q Consensus 54 ~~la~~Aa~~aL~~a~l~~~dId~li~~s~ 83 (281)
..-=++-+++.|++.|++|+.|.+..+.+.
T Consensus 75 a~~Rv~~~k~~L~~~Gi~~eRv~~~~~~~~ 104 (124)
T PF02662_consen 75 AEKRVERLKKLLEELGIEPERVRLYWISAP 104 (124)
T ss_pred HHHHHHHHHHHHHHcCCChhHeEEEEeCcc
Confidence 344456688999999999999999876553
No 297
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=24.10 E-value=1.9e+02 Score=29.00 Aligned_cols=47 Identities=9% Similarity=0.247 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhh
Q 023511 54 ISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEK 102 (281)
Q Consensus 54 ~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~ 102 (281)
.+=..+.++++|+++++.+++||.|+...-+. .+|.....+...++.
T Consensus 306 ~~~~~~~i~~~l~~a~~~~~~id~ViLvGGss--riP~v~~~l~~~fg~ 352 (627)
T PRK00290 306 VERTIEPCKQALKDAGLSVSDIDEVILVGGST--RMPAVQELVKEFFGK 352 (627)
T ss_pred HHHHHHHHHHHHHHcCCChhhCcEEEEECCcC--CChHHHHHHHHHhCC
Confidence 34455677899999999999999998654333 368888877777653
No 298
>PF07451 SpoVAD: Stage V sporulation protein AD (SpoVAD); InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long. This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation [].; PDB: 3LMA_D 3LM6_A.
Probab=23.71 E-value=1e+02 Score=28.08 Aligned_cols=19 Identities=16% Similarity=0.270 Sum_probs=13.0
Q ss_pred HhhcCCCCCCCCcEEecCC
Q 023511 230 KLEGKQFSLSNADYFVFHS 248 (281)
Q Consensus 230 ~l~~~g~~~~did~~i~Hq 248 (281)
+|++++++++|||+++---
T Consensus 62 al~Ka~l~~~dId~~~aGD 80 (329)
T PF07451_consen 62 ALKKAGLKKEDIDYLFAGD 80 (329)
T ss_dssp HHHHTT--GGG-SEEEEEE
T ss_pred HHHHcCCCHHHCeEEEehh
Confidence 5788999999999998543
No 299
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=22.82 E-value=1.9e+02 Score=28.71 Aligned_cols=46 Identities=9% Similarity=0.223 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHh
Q 023511 54 ISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFE 101 (281)
Q Consensus 54 ~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~ 101 (281)
.+=..+.++++|+++++.+++||.|+....+. .+|.....+...++
T Consensus 304 ~~~~~~~i~~~l~~a~~~~~~i~~V~LvGGss--riP~v~~~i~~~f~ 349 (595)
T TIGR02350 304 VERTKEPVRQALKDAGLSASDIDEVILVGGST--RIPAVQELVKDFFG 349 (595)
T ss_pred HHHHHHHHHHHHHHcCCCHhHCcEEEEECCcc--cChHHHHHHHHHhC
Confidence 33445667899999999999999999654333 36888887777665
No 300
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=22.78 E-value=4.7e+02 Score=26.08 Aligned_cols=90 Identities=11% Similarity=-0.001 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCceeeec-ccccchHHHHHHHHHHHH
Q 023511 53 VISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDS-TNACYGGTAALFNCVNWV 131 (281)
Q Consensus 53 ~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di-~~~C~g~~~aL~~A~~~l 131 (281)
-...+..|+..+|.++-...+.|.+|.|.+.......|.+.+. ......+ . .+ .+|-+-.-.||..|..++
T Consensus 418 rl~~aK~a~~~ll~~ay~~rD~v~lI~F~g~~a~~~lppT~~~-~~~~~~L--~-----~l~~gGgTpL~~gL~~A~~~l 489 (584)
T PRK13406 418 RLAEAKGAVELLLAEAYVRRDQVALVAFRGRGAELLLPPTRSL-VRAKRSL--A-----GLPGGGGTPLAAGLDAAAALA 489 (584)
T ss_pred HHHHHHHHHHHHHHhhcCCCCEEEEEEECCCceeEEcCCCcCH-HHHHHHH--h-----cCCCCCCChHHHHHHHHHHHH
Confidence 4566777888888877666788999988665444445655432 1222221 0 12 236677888888888877
Q ss_pred HhCCC-CCCeEEEEEeeccc
Q 023511 132 ESSSW-DGRYGLVVCTDSAV 150 (281)
Q Consensus 132 ~~g~~-~~~~aLVV~~e~~s 150 (281)
+.... ...+++|+-+|--.
T Consensus 490 ~~~~~~~~~~~iVLlTDG~~ 509 (584)
T PRK13406 490 LQVRRKGMTPTVVLLTDGRA 509 (584)
T ss_pred HHhccCCCceEEEEEeCCCC
Confidence 54311 12577777776654
No 301
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=22.73 E-value=2e+02 Score=29.07 Aligned_cols=43 Identities=12% Similarity=0.349 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHh
Q 023511 57 SLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFE 101 (281)
Q Consensus 57 a~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~ 101 (281)
..+.++++|+++++++++||.|+...-+ ..+|....+|...++
T Consensus 315 ~~~~i~~~L~~a~~~~~~i~~ViLvGGs--sriP~v~~~i~~~f~ 357 (653)
T PTZ00009 315 TLQPVEKVLKDAGMDKRSVHEVVLVGGS--TRIPKVQSLIKDFFN 357 (653)
T ss_pred HHHHHHHHHHHcCCCHHHCcEEEEECCC--CCChhHHHHHHHHhC
Confidence 3456889999999999999998865432 336888887777664
No 302
>CHL00094 dnaK heat shock protein 70
Probab=22.21 E-value=2.3e+02 Score=28.36 Aligned_cols=47 Identities=19% Similarity=0.308 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhh
Q 023511 54 ISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEK 102 (281)
Q Consensus 54 ~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~ 102 (281)
.+-....++++|+++++++++||.|+.+.-+ ..+|.....+...++.
T Consensus 308 ~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGs--sriP~v~~~l~~~fg~ 354 (621)
T CHL00094 308 INRCRIPVENALKDAKLDKSDIDEVVLVGGS--TRIPAIQELVKKLLGK 354 (621)
T ss_pred HHHHHHHHHHHHHHcCCChhhCcEEEEECCc--cCChHHHHHHHHHhCC
Confidence 3344556789999999999999999965433 3368888877777653
No 303
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=22.12 E-value=4.7e+02 Score=21.86 Aligned_cols=82 Identities=12% Similarity=0.112 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHHHHHHHc--CCCcCCccEEEEecccCC----C--------CCcchHHHHHHHHhhcCCCCceeee---c
Q 023511 51 EDVISMSLTAVTNLLEKY--KIDPKQIGRLEVGSETVI----D--------KSKSIKTFLMQIFEKFGNTDIEGVD---S 113 (281)
Q Consensus 51 e~~~~la~~Aa~~aL~~a--~l~~~dId~li~~s~t~~----~--------~~p~~a~~i~~~l~~~g~~~~~~~d---i 113 (281)
.+..+++.+++.+++.+- .-.-+.|++++++|.... + ..+.....+...+.... ++...+. -
T Consensus 23 ~s~l~~a~~~i~~~~~~ki~~~~~D~vGlilf~t~~~~~~~~~~~i~v~~~l~~~~~~~l~~l~~~~~-~~~~~~~~~~~ 101 (218)
T cd01458 23 ESPFEEALKCIRQLMKSKIISSPKDLVGVVFYGTEESKNPVGYENIYVLLDLDTPGAERVEDLKELIE-PGGLSFAGQVG 101 (218)
T ss_pred CChHHHHHHHHHHHHHhceeCCCCCeEEEEEEcccCCCCcCCCCceEEeecCCCCCHHHHHHHHHHhh-cchhhhcccCC
Confidence 578899999999999862 234578999999886311 1 11334444555555432 1111111 1
Q ss_pred ccccchHHHHHHHHHHHHHh
Q 023511 114 TNACYGGTAALFNCVNWVES 133 (281)
Q Consensus 114 ~~~C~g~~~aL~~A~~~l~~ 133 (281)
......+..||.+|..++..
T Consensus 102 ~~~~~~l~~aL~~a~~~~~~ 121 (218)
T cd01458 102 DSGQVSLSDALWVCLDLFSK 121 (218)
T ss_pred CCCCccHHHHHHHHHHHHHh
Confidence 23567789999999999986
No 304
>KOG3363 consensus Uncharacterized conserved nuclear protein [Function unknown]
Probab=21.92 E-value=1.2e+02 Score=25.05 Aligned_cols=47 Identities=28% Similarity=0.310 Sum_probs=30.3
Q ss_pred CCcCCccEEEEecccCCCCC-cchHHHHHHHHhhcCCCCceeeecccccchH
Q 023511 70 IDPKQIGRLEVGSETVIDKS-KSIKTFLMQIFEKFGNTDIEGVDSTNACYGG 120 (281)
Q Consensus 70 l~~~dId~li~~s~t~~~~~-p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~ 120 (281)
++|. ||+||++.. ++.. |.....|.+-++..+. +...+|-.++|+.|
T Consensus 108 lePk-idlLIvG~G--d~~~p~~v~~~V~~F~k~~ki-~lEi~dte~A~aTf 155 (196)
T KOG3363|consen 108 LEPK-IDLLIVGCG--DKKHPDKVRPSVRQFVKSHKI-KLEIVDTENAAATF 155 (196)
T ss_pred cCCC-ccEEEEecC--CcCCchhcCHHHHHHHHHhCc-ceEEecchhhhhHh
Confidence 4454 999998743 3322 2355555566665554 47788999999876
No 305
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=21.73 E-value=4.3e+02 Score=23.46 Aligned_cols=89 Identities=16% Similarity=0.087 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHH--HHHHHHhhcCCCCceeeecccccchHHHHHHHHHHH
Q 023511 53 VISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKT--FLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNW 130 (281)
Q Consensus 53 ~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~--~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~~ 130 (281)
-...+.-|+..+|.+|--..+.|.+|-|.-......+|++.+ .+++.|..++ .+|-+=...||..|..+
T Consensus 96 Rm~aaKG~~~~lL~dAYq~RdkvavI~F~G~~A~lll~pT~sv~~~~~~L~~l~---------~GG~TPL~~aL~~a~ev 166 (261)
T COG1240 96 RMAAAKGAALSLLRDAYQRRDKVAVIAFRGEKAELLLPPTSSVELAERALERLP---------TGGKTPLADALRQAYEV 166 (261)
T ss_pred HHHHHHHHHHHHHHHHHHccceEEEEEecCCcceEEeCCcccHHHHHHHHHhCC---------CCCCCchHHHHHHHHHH
Confidence 356677788999999988889999998875555556666544 3455554432 23555567788888887
Q ss_pred HHhCCC---CCCeEEEEEeeccc
Q 023511 131 VESSSW---DGRYGLVVCTDSAV 150 (281)
Q Consensus 131 l~~g~~---~~~~aLVV~~e~~s 150 (281)
+..-.- ....++||-+|-..
T Consensus 167 ~~r~~r~~p~~~~~~vviTDGr~ 189 (261)
T COG1240 167 LAREKRRGPDRRPVMVVITDGRA 189 (261)
T ss_pred HHHhhccCCCcceEEEEEeCCcc
Confidence 765430 13677888888754
No 306
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=21.49 E-value=83 Score=23.66 Aligned_cols=46 Identities=20% Similarity=0.154 Sum_probs=26.9
Q ss_pred cCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCceeeecccccchHH
Q 023511 72 PKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGT 121 (281)
Q Consensus 72 ~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~ 121 (281)
...+|+||++|-.... .++.. +...+...|. .+..+|..+||..+-
T Consensus 51 ~p~pe~liiGtG~~~~-~~~~~--~~~~l~~~GI-~ve~m~T~~Ac~tyN 96 (110)
T PF04430_consen 51 EPKPEVLIIGTGKRQL-FLPPE--LREYLRKKGI-GVEVMDTPAACRTYN 96 (110)
T ss_dssp CCS-SEEEEEETTS-S-ECTHH--HHHHHHTTT--EEEEE-HHHHHHHHH
T ss_pred cCCCcEEEEccCCccc-cCCHH--HHHHHHHcCC-eEEEECHHHHHHHHH
Confidence 3468999999854432 22222 3356666664 477788888998774
No 307
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=21.28 E-value=1e+02 Score=28.52 Aligned_cols=29 Identities=28% Similarity=0.283 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHcCCCcCCccEEEEec
Q 023511 54 ISMSLTAVTNLLEKYKIDPKQIGRLEVGS 82 (281)
Q Consensus 54 ~~la~~Aa~~aL~~a~l~~~dId~li~~s 82 (281)
.+-....++++|+++|++++|||.|.++.
T Consensus 50 ~~~l~~~i~~~l~~a~~~~~did~Iavt~ 78 (345)
T PTZ00340 50 REHILSLVKEALEEAKITPSDISLICYTK 78 (345)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEec
Confidence 44556678899999999999999998753
No 308
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=21.28 E-value=1.3e+02 Score=22.11 Aligned_cols=75 Identities=15% Similarity=0.206 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhhcCCCCceeeecccccchHHHHHHHHHHHHHhC
Q 023511 55 SMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESS 134 (281)
Q Consensus 55 ~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A~~~l~~g 134 (281)
+=|.++.+. |.+.| +..+++++.+.. +... +...|..+|.+ ++-.+-++++ ..+..+++..
T Consensus 17 pga~e~l~~-L~~~g-----~~~~~lTNns~~----s~~~-~~~~L~~~Gi~----~~~~~i~ts~----~~~~~~l~~~ 77 (101)
T PF13344_consen 17 PGAVEALDA-LRERG-----KPVVFLTNNSSR----SREE-YAKKLKKLGIP----VDEDEIITSG----MAAAEYLKEH 77 (101)
T ss_dssp TTHHHHHHH-HHHTT-----SEEEEEES-SSS-----HHH-HHHHHHHTTTT------GGGEEEHH----HHHHHHHHHH
T ss_pred cCHHHHHHH-HHHcC-----CCEEEEeCCCCC----CHHH-HHHHHHhcCcC----CCcCEEEChH----HHHHHHHHhc
Confidence 334555544 44445 555665543322 2233 33555666643 3334444444 3455566653
Q ss_pred CCCCCeEEEEEeecc
Q 023511 135 SWDGRYGLVVCTDSA 149 (281)
Q Consensus 135 ~~~~~~aLVV~~e~~ 149 (281)
. +.++++|++.+..
T Consensus 78 ~-~~~~v~vlG~~~l 91 (101)
T PF13344_consen 78 K-GGKKVYVLGSDGL 91 (101)
T ss_dssp T-TSSEEEEES-HHH
T ss_pred C-CCCEEEEEcCHHH
Confidence 3 4599999998754
No 309
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=21.15 E-value=2.5e+02 Score=25.44 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHcCCCcCCc
Q 023511 55 SMSLTAVTNLLEKYKIDPKQI 75 (281)
Q Consensus 55 ~la~~Aa~~aL~~a~l~~~dI 75 (281)
-....++.++|++.+++|+|+
T Consensus 27 ~~i~~~i~~al~~l~l~p~d~ 47 (301)
T PRK05778 27 FGILNAIIQALAELGLDPDKV 47 (301)
T ss_pred hHHHHHHHHHHHHhcCCCCCE
Confidence 467788899999999999875
No 310
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=21.03 E-value=93 Score=29.02 Aligned_cols=69 Identities=17% Similarity=0.184 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCccEEEEecccCCCC----Cc-----chHHHHHHHHhhcCCCCceeeecccccchHH
Q 023511 53 VISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDK----SK-----SIKTFLMQIFEKFGNTDIEGVDSTNACYGGT 121 (281)
Q Consensus 53 ~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~----~p-----~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~ 121 (281)
..++-.+|+++.|.++++++++||+|=+...|-.+. .| +....|....+..=..+...-|+..|--|.-
T Consensus 66 lg~~~a~av~~~l~~~~i~~~~I~~IgsHGQTv~H~P~~~~~~TlQiG~~~~iA~~tgi~vV~DFR~~Dia~GGqGAP 143 (364)
T PF03702_consen 66 LGELFADAVNQFLKKNGISPSDIDLIGSHGQTVFHRPEGQHPFTLQIGDPAVIAERTGITVVSDFRSADIAAGGQGAP 143 (364)
T ss_dssp HHHHHHHHHHHHHHHCT--GGGEEEEEE--EEEEEECCCTTTEEEEES-HHHHHHHHSS-EEE--CHHHHHTTS-S--
T ss_pred HHHHHHHHHHHHHHHcCCCcccccEEEeCCcceecCcCCCCCceEecCCHHHHHHHHCcCEEeechHHHHhccCCCCC
Confidence 556788999999999999999999998666653321 12 2456566655542111333445554444443
No 311
>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit. Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....
Probab=20.72 E-value=74 Score=19.36 Aligned_cols=19 Identities=26% Similarity=0.268 Sum_probs=13.3
Q ss_pred HHHHHHHHHHcCCCcCCcc
Q 023511 58 LTAVTNLLEKYKIDPKQIG 76 (281)
Q Consensus 58 ~~Aa~~aL~~a~l~~~dId 76 (281)
.-+++++..+.|+++++|.
T Consensus 6 sP~ar~la~e~gidl~~v~ 24 (39)
T PF02817_consen 6 SPAARKLAAELGIDLSQVK 24 (39)
T ss_dssp SHHHHHHHHHTT--GGGSS
T ss_pred CHHHHHHHHHcCCCccccc
Confidence 3478899999999988663
No 312
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=20.25 E-value=2.4e+02 Score=19.83 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCcCCccEEEEecccC
Q 023511 49 EVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETV 85 (281)
Q Consensus 49 ~~e~~~~la~~Aa~~aL~~a~l~~~dId~li~~s~t~ 85 (281)
++++.-|+ ..+++++-|+.++.+|+..+++..+
T Consensus 18 pG~ti~d~----L~kllekRgl~~~~~~vf~~g~~k~ 50 (73)
T cd01817 18 PGESIRDL----LSGLCEKRGINYAAVDLFLVGGDKP 50 (73)
T ss_pred CCCCHHHH----HHHHHHHcCCChhHEEEEEecCCcc
Confidence 56766555 4588899999999999999876533
No 313
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=20.13 E-value=4.3e+02 Score=20.58 Aligned_cols=87 Identities=14% Similarity=0.083 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHcCCCcC-CccEEEEecccCCCCCc----chHHHHHHHHhhcCCCCceeeecccccchHHHHHHHH
Q 023511 53 VISMSLTAVTNLLEKYKIDPK-QIGRLEVGSETVIDKSK----SIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNC 127 (281)
Q Consensus 53 ~~~la~~Aa~~aL~~a~l~~~-dId~li~~s~t~~~~~p----~~a~~i~~~l~~~g~~~~~~~di~~~C~g~~~aL~~A 127 (281)
..+.+.+++..++... .+. .+.++.|.+..... .| .....+...+..+. .+.. .|++....||..|
T Consensus 19 ~~~~~~~al~~~l~~l--~~~~~~~l~~Fs~~~~~~-~~~~~~~~~~~~~~~~~~l~-----~~~~-~g~T~l~~al~~a 89 (171)
T cd01461 19 KIEQTKEALLTALKDL--PPGDYFNIIGFSDTVEEF-SPSSVSATAENVAAAIEYVN-----RLQA-LGGTNMNDALEAA 89 (171)
T ss_pred hHHHHHHHHHHHHHhC--CCCCEEEEEEeCCCceee-cCcceeCCHHHHHHHHHHHH-----hcCC-CCCcCHHHHHHHH
Confidence 3567777888877764 343 58888787653222 22 12222333333321 1111 6788899999999
Q ss_pred HHHHHhCCCCCCeEEEEEeecc
Q 023511 128 VNWVESSSWDGRYGLVVCTDSA 149 (281)
Q Consensus 128 ~~~l~~g~~~~~~aLVV~~e~~ 149 (281)
...+.... ...+.+|+-+|-.
T Consensus 90 ~~~l~~~~-~~~~~iillTDG~ 110 (171)
T cd01461 90 LELLNSSP-GSVPQIILLTDGE 110 (171)
T ss_pred HHhhccCC-CCccEEEEEeCCC
Confidence 99987532 2256666666654
No 314
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=20.03 E-value=1.5e+02 Score=29.96 Aligned_cols=44 Identities=7% Similarity=0.203 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHcCCCcCCccEEEEecccCCCCCcchHHHHHHHHhh
Q 023511 57 SLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEK 102 (281)
Q Consensus 57 a~~Aa~~aL~~a~l~~~dId~li~~s~t~~~~~p~~a~~i~~~l~~ 102 (281)
..+.++++|+++++.+++||.|+...-+ ...|....++...++.
T Consensus 350 ~~~~i~~~L~~a~~~~~~i~~ViLvGGs--sriP~v~~~l~~~f~~ 393 (663)
T PTZ00400 350 TIEPCEKCIKDAGVKKDELNDVILVGGM--TRMPKVSETVKKIFGK 393 (663)
T ss_pred HHHHHHHHHHHcCCCHHHCcEEEEECCc--cCChHHHHHHHHHhCC
Confidence 3566789999999999999999965433 3368888888777754
Done!