Query 023512
Match_columns 281
No_of_seqs 168 out of 2631
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 04:35:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023512.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023512hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2524 Predicted transcriptio 99.8 5.9E-20 1.3E-24 145.5 11.7 122 140-266 170-291 (294)
2 COG2524 Predicted transcriptio 99.8 1.8E-19 3.8E-24 142.8 11.6 126 35-201 166-292 (294)
3 KOG1764 5'-AMP-activated prote 99.8 3.3E-18 7.2E-23 148.7 18.3 235 2-267 95-360 (381)
4 PRK14869 putative manganese-de 99.8 1.3E-18 2.7E-23 160.3 16.5 230 40-279 67-317 (546)
5 COG3620 Predicted transcriptio 99.7 7.2E-17 1.6E-21 118.8 11.5 121 39-200 63-183 (187)
6 COG3448 CBS-domain-containing 99.7 1.2E-16 2.7E-21 129.1 13.2 131 138-270 241-376 (382)
7 cd04630 CBS_pair_17 The CBS do 99.7 2.8E-16 6.1E-21 114.8 13.4 111 153-264 2-114 (114)
8 cd04619 CBS_pair_6 The CBS dom 99.7 3.3E-16 7.2E-21 114.4 13.1 110 154-263 3-113 (114)
9 TIGR03520 GldE gliding motilit 99.7 8.3E-16 1.8E-20 136.0 16.7 163 30-237 180-350 (408)
10 COG3620 Predicted transcriptio 99.7 2.1E-16 4.5E-21 116.4 10.4 121 141-266 64-184 (187)
11 cd04618 CBS_pair_5 The CBS dom 99.7 3.7E-16 8.1E-21 111.0 11.4 94 153-264 2-98 (98)
12 PRK15094 magnesium/cobalt effl 99.7 1.2E-15 2.6E-20 129.0 16.2 173 20-236 48-228 (292)
13 COG2905 Predicted signal-trans 99.7 8.2E-16 1.8E-20 134.7 15.2 135 141-279 148-284 (610)
14 cd04641 CBS_pair_28 The CBS do 99.7 9.3E-16 2E-20 113.1 13.4 112 153-264 2-120 (120)
15 COG3448 CBS-domain-containing 99.7 3.3E-16 7.1E-21 126.7 11.4 130 38-201 242-373 (382)
16 cd04587 CBS_pair_CAP-ED_DUF294 99.7 1.2E-15 2.6E-20 111.0 13.2 112 153-264 2-113 (113)
17 cd04603 CBS_pair_KefB_assoc Th 99.7 1.2E-15 2.6E-20 111.0 12.7 107 154-263 3-110 (111)
18 cd04593 CBS_pair_EriC_assoc_ba 99.7 1.5E-15 3.3E-20 111.0 12.8 111 153-264 2-115 (115)
19 cd04600 CBS_pair_HPP_assoc Thi 99.7 1.8E-15 3.9E-20 112.0 12.7 112 152-264 2-124 (124)
20 cd04622 CBS_pair_9 The CBS dom 99.7 3.6E-15 7.7E-20 108.5 13.5 112 153-264 2-113 (113)
21 cd04617 CBS_pair_4 The CBS dom 99.7 2.2E-15 4.9E-20 110.7 12.5 110 153-263 2-117 (118)
22 cd04623 CBS_pair_10 The CBS do 99.7 3.5E-15 7.6E-20 108.4 13.1 111 153-264 2-113 (113)
23 PRK10892 D-arabinose 5-phospha 99.7 1.4E-15 3E-20 131.6 12.6 124 140-265 200-324 (326)
24 cd04620 CBS_pair_7 The CBS dom 99.6 3.9E-15 8.4E-20 108.8 12.8 111 153-264 2-115 (115)
25 cd04625 CBS_pair_12 The CBS do 99.6 5.9E-15 1.3E-19 107.2 13.3 111 153-264 2-112 (112)
26 cd04608 CBS_pair_PALP_assoc Th 99.6 1.5E-15 3.2E-20 112.8 10.1 112 152-264 2-123 (124)
27 TIGR01303 IMP_DH_rel_1 IMP deh 99.6 4.7E-15 1E-19 132.5 15.0 156 99-268 50-205 (475)
28 cd04611 CBS_pair_PAS_GGDEF_DUF 99.6 9.1E-15 2E-19 106.0 13.7 109 153-263 2-110 (111)
29 cd04643 CBS_pair_30 The CBS do 99.6 4.2E-15 9E-20 108.7 11.8 110 153-264 2-116 (116)
30 cd04615 CBS_pair_2 The CBS dom 99.6 5.4E-15 1.2E-19 107.6 12.3 109 154-263 3-112 (113)
31 TIGR00400 mgtE Mg2+ transporte 99.6 1.4E-15 3.1E-20 136.3 11.1 188 20-266 112-306 (449)
32 PRK07807 inosine 5-monophospha 99.6 5.4E-15 1.2E-19 132.3 14.6 127 133-268 80-207 (479)
33 cd04627 CBS_pair_14 The CBS do 99.6 6.9E-15 1.5E-19 108.9 12.7 110 153-262 2-121 (123)
34 cd04613 CBS_pair_SpoIVFB_EriC_ 99.6 6.8E-15 1.5E-19 107.1 12.2 111 153-264 2-114 (114)
35 PRK11543 gutQ D-arabinose 5-ph 99.6 4E-15 8.8E-20 128.5 12.8 123 141-265 196-319 (321)
36 cd04631 CBS_pair_18 The CBS do 99.6 7E-15 1.5E-19 109.0 12.3 111 153-264 2-125 (125)
37 cd04803 CBS_pair_15 The CBS do 99.6 6.9E-15 1.5E-19 108.5 12.2 112 153-264 2-122 (122)
38 cd04802 CBS_pair_3 The CBS dom 99.6 1.4E-14 3E-19 105.3 13.6 110 153-263 2-111 (112)
39 cd04604 CBS_pair_KpsF_GutQ_ass 99.6 7.9E-15 1.7E-19 106.8 12.4 111 152-263 2-113 (114)
40 cd04607 CBS_pair_NTP_transfera 99.6 1.1E-14 2.3E-19 106.1 13.0 109 153-263 3-112 (113)
41 cd04621 CBS_pair_8 The CBS dom 99.6 8.2E-15 1.8E-19 110.4 12.3 111 153-264 2-135 (135)
42 cd04642 CBS_pair_29 The CBS do 99.6 9.7E-15 2.1E-19 108.6 12.2 110 153-263 2-125 (126)
43 cd04639 CBS_pair_26 The CBS do 99.6 1.1E-14 2.3E-19 105.7 12.2 108 153-263 2-110 (111)
44 cd04596 CBS_pair_DRTGG_assoc T 99.6 1.1E-14 2.3E-19 105.3 12.1 105 152-263 2-107 (108)
45 cd04614 CBS_pair_1 The CBS dom 99.6 6.7E-15 1.4E-19 104.2 10.8 94 153-264 2-96 (96)
46 cd04588 CBS_pair_CAP-ED_DUF294 99.6 2E-14 4.4E-19 104.0 13.6 108 153-263 2-109 (110)
47 cd04605 CBS_pair_MET2_assoc Th 99.6 1.8E-14 3.9E-19 104.3 13.3 107 152-263 2-109 (110)
48 cd04629 CBS_pair_16 The CBS do 99.6 7.2E-15 1.6E-19 107.1 11.0 111 153-264 2-114 (114)
49 cd04624 CBS_pair_11 The CBS do 99.6 1.9E-14 4E-19 104.6 13.2 109 153-263 2-111 (112)
50 cd04800 CBS_pair_CAP-ED_DUF294 99.6 2E-14 4.3E-19 104.3 13.2 109 153-263 2-110 (111)
51 cd04595 CBS_pair_DHH_polyA_Pol 99.6 2.2E-14 4.8E-19 103.9 13.2 108 152-263 2-109 (110)
52 cd04585 CBS_pair_ACT_assoc2 Th 99.6 1.8E-14 3.9E-19 106.1 12.8 112 153-264 2-122 (122)
53 COG4109 Predicted transcriptio 99.6 4.5E-15 9.9E-20 122.9 10.5 119 142-267 188-307 (432)
54 cd04586 CBS_pair_BON_assoc Thi 99.6 8.1E-15 1.7E-19 110.4 10.9 112 152-264 2-135 (135)
55 cd04801 CBS_pair_M50_like This 99.6 1.4E-14 3E-19 105.7 11.6 108 153-263 2-113 (114)
56 cd04640 CBS_pair_27 The CBS do 99.6 1.3E-14 2.9E-19 107.9 11.6 111 153-263 2-125 (126)
57 cd04582 CBS_pair_ABC_OpuCA_ass 99.6 2.2E-14 4.9E-19 103.1 12.4 103 153-263 2-105 (106)
58 cd04589 CBS_pair_CAP-ED_DUF294 99.6 3.1E-14 6.6E-19 103.3 13.2 110 153-264 2-111 (111)
59 cd04636 CBS_pair_23 The CBS do 99.6 1.9E-14 4.1E-19 107.9 11.9 110 153-264 2-132 (132)
60 cd04633 CBS_pair_20 The CBS do 99.6 2.1E-14 4.4E-19 105.9 11.9 111 153-264 2-121 (121)
61 cd04590 CBS_pair_CorC_HlyC_ass 99.6 3.8E-14 8.3E-19 102.8 12.7 107 153-263 2-110 (111)
62 cd04635 CBS_pair_22 The CBS do 99.6 1.8E-14 3.9E-19 106.3 11.2 112 153-264 2-122 (122)
63 PRK15094 magnesium/cobalt effl 99.6 1.7E-14 3.7E-19 122.0 12.4 126 139-268 64-191 (292)
64 cd04583 CBS_pair_ABC_OpuCA_ass 99.6 4.3E-14 9.3E-19 102.0 12.9 106 152-263 2-108 (109)
65 cd04626 CBS_pair_13 The CBS do 99.6 3.2E-14 7E-19 103.2 12.0 108 153-263 2-110 (111)
66 cd04632 CBS_pair_19 The CBS do 99.6 3.4E-14 7.3E-19 105.9 12.2 112 153-264 2-128 (128)
67 cd04612 CBS_pair_SpoIVFB_EriC_ 99.6 5.5E-14 1.2E-18 101.8 13.0 109 153-263 2-110 (111)
68 cd04609 CBS_pair_PALP_assoc2 T 99.6 4.6E-14 9.9E-19 102.0 12.1 109 153-264 2-110 (110)
69 cd04618 CBS_pair_5 The CBS dom 99.6 5.1E-14 1.1E-18 100.0 12.0 91 50-196 2-96 (98)
70 PRK05567 inosine 5'-monophosph 99.6 6.1E-14 1.3E-18 126.9 15.3 174 42-265 88-266 (486)
71 PRK11573 hypothetical protein; 99.6 8.6E-14 1.9E-18 123.2 15.8 167 30-236 176-350 (413)
72 cd04637 CBS_pair_24 The CBS do 99.6 8.5E-14 1.8E-18 102.7 13.2 112 153-264 2-122 (122)
73 PRK07107 inosine 5-monophospha 99.6 2.6E-14 5.6E-19 128.7 12.3 119 154-277 107-231 (502)
74 TIGR03520 GldE gliding motilit 99.6 3.5E-14 7.5E-19 125.7 12.7 123 139-267 188-312 (408)
75 cd04610 CBS_pair_ParBc_assoc T 99.6 1.1E-13 2.4E-18 99.5 12.9 105 152-263 2-106 (107)
76 PRK01862 putative voltage-gate 99.6 4E-14 8.6E-19 131.2 13.2 127 138-267 443-572 (574)
77 cd04601 CBS_pair_IMPDH This cd 99.6 7.5E-14 1.6E-18 100.9 11.8 106 152-263 2-109 (110)
78 cd04599 CBS_pair_GGDEF_assoc2 99.6 1.1E-13 2.3E-18 99.3 12.4 103 153-263 2-104 (105)
79 COG1253 TlyC Hemolysins and re 99.6 1.5E-13 3.1E-18 122.8 15.8 174 19-237 186-368 (429)
80 PRK10892 D-arabinose 5-phospha 99.6 5.9E-14 1.3E-18 121.4 13.0 120 39-197 200-322 (326)
81 cd04602 CBS_pair_IMPDH_2 This 99.5 1.1E-13 2.5E-18 100.9 11.9 106 152-263 2-113 (114)
82 cd04603 CBS_pair_KefB_assoc Th 99.5 1.1E-13 2.3E-18 100.6 11.7 106 50-196 2-109 (111)
83 PRK07807 inosine 5-monophospha 99.5 1.9E-13 4.1E-18 122.4 15.2 164 38-251 86-251 (479)
84 cd04606 CBS_pair_Mg_transporte 99.5 1.2E-13 2.5E-18 100.0 11.4 101 157-264 2-108 (109)
85 PTZ00314 inosine-5'-monophosph 99.5 8E-14 1.7E-18 125.7 12.6 122 143-272 97-224 (495)
86 cd04594 CBS_pair_EriC_assoc_ar 99.5 2.2E-13 4.7E-18 97.7 12.3 101 155-264 4-104 (104)
87 cd04630 CBS_pair_17 The CBS do 99.5 8.1E-14 1.8E-18 101.6 9.8 94 1-94 19-113 (114)
88 cd04614 CBS_pair_1 The CBS dom 99.5 2.2E-13 4.7E-18 96.3 11.6 91 50-196 2-94 (96)
89 cd02205 CBS_pair The CBS domai 99.5 3.1E-13 6.7E-18 97.5 12.7 111 153-264 2-113 (113)
90 cd04641 CBS_pair_28 The CBS do 99.5 1.4E-13 3.1E-18 101.3 11.0 116 49-196 1-118 (120)
91 COG0517 FOG: CBS domain [Gener 99.5 5.7E-13 1.2E-17 97.4 13.5 109 152-262 7-117 (117)
92 PRK11543 gutQ D-arabinose 5-ph 99.5 1.4E-13 3E-18 118.9 11.6 118 40-197 196-317 (321)
93 TIGR01303 IMP_DH_rel_1 IMP deh 99.5 9.4E-13 2E-17 117.9 16.9 166 39-254 86-252 (475)
94 COG4536 CorB Putative Mg2+ and 99.5 4E-13 8.6E-18 112.6 13.2 166 32-237 191-363 (423)
95 PLN02274 inosine-5'-monophosph 99.5 5.6E-13 1.2E-17 120.3 15.2 111 152-268 108-224 (505)
96 cd04619 CBS_pair_6 The CBS dom 99.5 1.6E-13 3.5E-18 100.1 9.7 94 1-94 19-113 (114)
97 cd04584 CBS_pair_ACT_assoc Thi 99.5 3.2E-13 7E-18 99.4 11.3 111 153-264 2-121 (121)
98 cd04801 CBS_pair_M50_like This 99.5 4.3E-13 9.3E-18 97.8 11.6 109 49-196 1-112 (114)
99 TIGR01302 IMP_dehydrog inosine 99.5 5.5E-13 1.2E-17 119.5 14.2 117 143-267 81-202 (450)
100 cd04595 CBS_pair_DHH_polyA_Pol 99.5 1.2E-12 2.6E-17 94.7 13.4 107 49-196 2-108 (110)
101 cd04591 CBS_pair_EriC_assoc_eu 99.5 6.3E-13 1.4E-17 95.6 11.8 100 152-264 2-105 (105)
102 cd04600 CBS_pair_HPP_assoc Thi 99.5 7.6E-13 1.7E-17 97.8 12.1 120 48-196 1-122 (124)
103 cd04599 CBS_pair_GGDEF_assoc2 99.5 1.1E-12 2.4E-17 94.0 12.5 102 50-196 2-103 (105)
104 cd04617 CBS_pair_4 The CBS dom 99.5 1.1E-12 2.4E-17 96.3 12.5 110 50-196 2-116 (118)
105 cd04634 CBS_pair_21 The CBS do 99.5 1.1E-12 2.3E-17 99.8 12.8 110 153-263 2-142 (143)
106 COG2905 Predicted signal-trans 99.5 1.6E-13 3.4E-18 120.6 9.1 96 1-97 175-270 (610)
107 TIGR00393 kpsF KpsF/GutQ famil 99.5 4.2E-13 9.2E-18 113.0 11.4 112 142-257 155-268 (268)
108 TIGR00400 mgtE Mg2+ transporte 99.5 6E-13 1.3E-17 119.5 13.0 120 140-268 129-254 (449)
109 PRK05567 inosine 5'-monophosph 99.5 9.6E-13 2.1E-17 119.2 14.2 116 143-266 88-205 (486)
110 cd04623 CBS_pair_10 The CBS do 99.5 5.2E-13 1.1E-17 96.9 10.0 93 2-94 20-112 (113)
111 PRK11573 hypothetical protein; 99.5 9.5E-13 2.1E-17 116.6 13.4 128 139-268 184-313 (413)
112 cd04800 CBS_pair_CAP-ED_DUF294 99.5 2E-12 4.2E-17 93.7 12.7 109 49-196 1-109 (111)
113 cd04629 CBS_pair_16 The CBS do 99.5 1.3E-12 2.8E-17 95.1 11.7 111 49-196 1-112 (114)
114 cd04611 CBS_pair_PAS_GGDEF_DUF 99.5 2.3E-12 5E-17 93.2 12.9 107 50-196 2-109 (111)
115 cd04585 CBS_pair_ACT_assoc2 Th 99.5 1.1E-12 2.4E-17 96.5 11.3 119 49-196 1-120 (122)
116 cd04598 CBS_pair_GGDEF_assoc T 99.5 9.3E-13 2E-17 96.6 10.9 110 153-263 2-118 (119)
117 cd04605 CBS_pair_MET2_assoc Th 99.5 2.6E-12 5.6E-17 92.9 13.0 105 49-196 2-108 (110)
118 cd04626 CBS_pair_13 The CBS do 99.5 2E-12 4.4E-17 93.6 12.4 107 50-196 2-109 (111)
119 cd04633 CBS_pair_20 The CBS do 99.5 2.4E-12 5.2E-17 94.7 12.8 118 50-196 2-119 (121)
120 cd04615 CBS_pair_2 The CBS dom 99.4 2.3E-12 5.1E-17 93.6 12.4 108 50-196 2-111 (113)
121 cd04586 CBS_pair_BON_assoc Thi 99.4 1.3E-12 2.8E-17 98.3 11.3 132 48-196 1-133 (135)
122 cd04583 CBS_pair_ABC_OpuCA_ass 99.4 3.2E-12 6.9E-17 92.1 12.9 104 49-196 2-107 (109)
123 cd04639 CBS_pair_26 The CBS do 99.4 1.8E-12 3.8E-17 93.9 11.6 106 50-196 2-109 (111)
124 cd04588 CBS_pair_CAP-ED_DUF294 99.4 3.4E-12 7.3E-17 92.3 13.0 107 49-196 1-108 (110)
125 cd04637 CBS_pair_24 The CBS do 99.4 4.5E-12 9.7E-17 93.5 13.8 118 50-196 2-120 (122)
126 cd04627 CBS_pair_14 The CBS do 99.4 4.5E-12 9.8E-17 93.7 13.5 116 50-195 2-120 (123)
127 cd04621 CBS_pair_8 The CBS dom 99.4 2.7E-12 6E-17 96.6 12.5 131 50-196 2-133 (135)
128 COG4109 Predicted transcriptio 99.4 1.3E-12 2.8E-17 108.6 11.3 134 22-200 168-306 (432)
129 cd04596 CBS_pair_DRTGG_assoc T 99.4 2.1E-12 4.5E-17 93.2 11.2 103 49-196 2-106 (108)
130 cd04594 CBS_pair_EriC_assoc_ar 99.4 4.5E-12 9.7E-17 90.8 12.9 99 52-196 4-102 (104)
131 cd04642 CBS_pair_29 The CBS do 99.4 2.4E-12 5.2E-17 95.6 11.8 121 50-196 2-124 (126)
132 cd04631 CBS_pair_18 The CBS do 99.4 1.7E-12 3.6E-17 96.1 10.9 120 49-196 1-123 (125)
133 cd04582 CBS_pair_ABC_OpuCA_ass 99.4 4E-12 8.6E-17 91.3 12.6 102 49-196 1-104 (106)
134 cd04624 CBS_pair_11 The CBS do 99.4 3.2E-12 7E-17 92.7 12.2 108 49-196 1-110 (112)
135 cd04607 CBS_pair_NTP_transfera 99.4 2.5E-12 5.4E-17 93.5 11.5 107 50-196 3-111 (113)
136 cd04612 CBS_pair_SpoIVFB_EriC_ 99.4 4E-12 8.7E-17 91.9 12.6 108 49-196 1-109 (111)
137 cd04638 CBS_pair_25 The CBS do 99.4 3.5E-12 7.6E-17 91.6 12.1 103 153-263 2-105 (106)
138 cd04589 CBS_pair_CAP-ED_DUF294 99.4 6.2E-12 1.3E-16 91.1 13.5 108 50-196 2-109 (111)
139 TIGR01137 cysta_beta cystathio 99.4 2.2E-12 4.9E-17 116.6 13.6 122 138-265 331-453 (454)
140 cd04802 CBS_pair_3 The CBS dom 99.4 5.6E-12 1.2E-16 91.4 13.1 110 49-196 1-110 (112)
141 PRK01862 putative voltage-gate 99.4 1.5E-12 3.3E-17 120.7 12.5 124 37-199 443-570 (574)
142 cd04625 CBS_pair_12 The CBS do 99.4 1.4E-12 3.1E-17 94.6 9.8 92 2-94 20-111 (112)
143 PLN02274 inosine-5'-monophosph 99.4 1.5E-11 3.3E-16 111.1 18.3 163 44-251 103-272 (505)
144 PRK07107 inosine 5-monophospha 99.4 5.2E-12 1.1E-16 113.9 15.2 115 42-197 95-217 (502)
145 cd04593 CBS_pair_EriC_assoc_ba 99.4 6.7E-12 1.5E-16 91.5 12.8 109 49-196 1-113 (115)
146 cd04636 CBS_pair_23 The CBS do 99.4 5E-12 1.1E-16 94.7 12.3 128 50-196 2-130 (132)
147 cd04622 CBS_pair_9 The CBS dom 99.4 6E-12 1.3E-16 91.4 12.1 110 49-196 1-111 (113)
148 PTZ00314 inosine-5'-monophosph 99.4 9.7E-12 2.1E-16 112.3 16.0 114 43-198 98-216 (495)
149 cd04643 CBS_pair_30 The CBS do 99.4 5.4E-12 1.2E-16 92.1 11.9 111 50-196 2-114 (116)
150 cd04803 CBS_pair_15 The CBS do 99.4 5.3E-12 1.1E-16 93.0 11.9 117 50-196 2-120 (122)
151 TIGR01302 IMP_dehydrog inosine 99.4 9.1E-12 2E-16 111.7 15.2 114 42-198 81-199 (450)
152 cd04620 CBS_pair_7 The CBS dom 99.4 7.8E-12 1.7E-16 91.1 11.9 108 50-196 2-113 (115)
153 cd04610 CBS_pair_ParBc_assoc T 99.4 1E-11 2.2E-16 89.2 12.3 103 49-196 2-105 (107)
154 cd04608 CBS_pair_PALP_assoc Th 99.4 2E-12 4.3E-17 95.9 8.8 110 49-197 2-122 (124)
155 KOG2550 IMP dehydrogenase/GMP 99.4 6.2E-13 1.3E-17 112.3 6.4 161 99-272 69-234 (503)
156 cd04587 CBS_pair_CAP-ED_DUF294 99.4 2.3E-12 5E-17 93.6 8.6 93 1-94 19-112 (113)
157 cd04635 CBS_pair_22 The CBS do 99.4 6.9E-12 1.5E-16 92.4 11.2 118 49-196 1-120 (122)
158 cd04632 CBS_pair_19 The CBS do 99.4 1.7E-11 3.6E-16 91.2 13.3 121 50-196 2-126 (128)
159 cd04590 CBS_pair_CorC_HlyC_ass 99.4 1.4E-11 3E-16 89.2 12.3 105 50-196 2-109 (111)
160 cd04602 CBS_pair_IMPDH_2 This 99.4 1.2E-11 2.5E-16 90.2 11.9 104 49-196 2-112 (114)
161 cd04591 CBS_pair_EriC_assoc_eu 99.4 1.1E-11 2.4E-16 89.0 11.4 97 50-196 3-103 (105)
162 cd04584 CBS_pair_ACT_assoc Thi 99.4 1.7E-11 3.8E-16 90.0 12.6 117 50-196 2-119 (121)
163 COG1253 TlyC Hemolysins and re 99.4 1E-11 2.2E-16 111.0 13.4 125 139-267 203-329 (429)
164 cd04640 CBS_pair_27 The CBS do 99.4 6.4E-12 1.4E-16 93.3 10.3 114 50-196 2-124 (126)
165 cd04613 CBS_pair_SpoIVFB_EriC_ 99.4 4.9E-12 1.1E-16 91.9 9.4 93 1-94 19-113 (114)
166 cd04634 CBS_pair_21 The CBS do 99.4 2E-11 4.3E-16 92.9 13.0 137 49-196 1-141 (143)
167 cd04601 CBS_pair_IMPDH This cd 99.4 1E-11 2.2E-16 89.6 10.5 104 49-196 2-108 (110)
168 COG0517 FOG: CBS domain [Gener 99.4 3.8E-11 8.2E-16 87.6 13.6 111 45-195 3-116 (117)
169 TIGR00393 kpsF KpsF/GutQ famil 99.3 8.2E-12 1.8E-16 105.1 10.4 111 41-191 155-268 (268)
170 cd04606 CBS_pair_Mg_transporte 99.3 1.2E-11 2.7E-16 89.2 9.8 99 54-197 2-107 (109)
171 KOG1764 5'-AMP-activated prote 99.3 6.4E-11 1.4E-15 103.4 15.8 199 49-268 76-288 (381)
172 PRK14869 putative manganese-de 99.3 7.9E-12 1.7E-16 115.4 10.8 133 131-265 235-392 (546)
173 TIGR01137 cysta_beta cystathio 99.3 2.4E-11 5.2E-16 109.9 13.7 119 38-197 332-451 (454)
174 cd04604 CBS_pair_KpsF_GutQ_ass 99.3 1.3E-11 2.8E-16 89.7 9.3 91 3-94 22-113 (114)
175 cd04592 CBS_pair_EriC_assoc_eu 99.3 3E-11 6.4E-16 90.6 11.3 98 153-250 2-119 (133)
176 COG4536 CorB Putative Mg2+ and 99.3 9.4E-12 2E-16 104.5 8.5 126 139-268 197-326 (423)
177 cd04598 CBS_pair_GGDEF_assoc T 99.3 8.9E-11 1.9E-15 86.0 12.7 111 50-196 2-117 (119)
178 cd04609 CBS_pair_PALP_assoc2 T 99.3 7.3E-11 1.6E-15 85.0 12.0 106 50-196 2-108 (110)
179 cd04638 CBS_pair_25 The CBS do 99.3 8.8E-11 1.9E-15 84.3 12.3 102 50-196 2-104 (106)
180 cd02205 CBS_pair The CBS domai 99.3 1.3E-10 2.8E-15 83.7 12.3 108 50-196 2-111 (113)
181 COG2239 MgtE Mg/Co/Ni transpor 99.2 1.4E-10 3.1E-15 102.5 10.8 119 140-267 130-254 (451)
182 PF00571 CBS: CBS domain CBS d 99.2 7.2E-11 1.6E-15 74.8 6.1 56 211-266 1-56 (57)
183 PF00571 CBS: CBS domain CBS d 99.1 1.4E-10 3.1E-15 73.4 6.4 54 43-96 1-55 (57)
184 cd04592 CBS_pair_EriC_assoc_eu 99.1 6.6E-10 1.4E-14 83.3 10.1 115 49-182 1-116 (133)
185 COG4535 CorC Putative Mg2+ and 99.1 5E-10 1.1E-14 88.4 8.6 158 35-235 61-227 (293)
186 TIGR01186 proV glycine betaine 99.0 2.1E-08 4.6E-13 87.5 16.6 107 154-267 252-359 (363)
187 COG2239 MgtE Mg/Co/Ni transpor 99.0 2.4E-09 5.2E-14 94.8 10.5 120 33-197 124-250 (451)
188 COG4535 CorC Putative Mg2+ and 99.0 9.5E-10 2E-14 86.9 6.4 123 140-266 65-189 (293)
189 PRK10070 glycine betaine trans 98.9 7.4E-08 1.6E-12 85.1 15.4 103 157-266 290-393 (400)
190 TIGR01186 proV glycine betaine 98.7 7E-07 1.5E-11 78.0 16.3 149 7-201 198-359 (363)
191 KOG0474 Cl- channel CLC-7 and 98.7 3.8E-08 8.3E-13 88.0 7.2 155 39-196 580-743 (762)
192 PRK10070 glycine betaine trans 98.7 1.2E-06 2.6E-11 77.5 16.4 150 7-202 233-395 (400)
193 KOG2550 IMP dehydrogenase/GMP 98.7 5.4E-08 1.2E-12 82.9 7.2 162 49-258 116-282 (503)
194 KOG0474 Cl- channel CLC-7 and 98.6 1.2E-07 2.6E-12 84.9 6.9 124 139-265 579-746 (762)
195 cd04597 CBS_pair_DRTGG_assoc2 98.4 9.5E-07 2.1E-11 64.2 5.9 55 209-263 58-112 (113)
196 cd04597 CBS_pair_DRTGG_assoc2 98.4 8.8E-07 1.9E-11 64.3 5.6 53 41-93 58-111 (113)
197 KOG0475 Cl- channel CLC-3 and 98.2 1.8E-05 3.8E-10 71.4 11.6 113 153-266 557-695 (696)
198 smart00116 CBS Domain in cysta 98.1 1E-05 2.2E-10 48.2 5.9 47 219-265 2-48 (49)
199 COG4175 ProV ABC-type proline/ 98.1 1.6E-05 3.5E-10 66.5 8.4 147 74-267 234-384 (386)
200 KOG0475 Cl- channel CLC-3 and 98.1 1.9E-05 4.2E-10 71.2 9.1 131 51-197 558-692 (696)
201 smart00116 CBS Domain in cysta 97.8 7.2E-05 1.6E-09 44.4 5.9 46 50-95 1-47 (49)
202 KOG0476 Cl- channel CLC-2 and 97.7 0.00019 4E-09 66.3 9.3 60 40-99 587-649 (931)
203 TIGR03415 ABC_choXWV_ATP choli 97.7 0.00073 1.6E-08 59.6 11.5 83 173-266 298-380 (382)
204 TIGR03415 ABC_choXWV_ATP choli 97.4 0.0043 9.2E-08 54.8 12.4 140 7-200 233-380 (382)
205 COG1125 OpuBA ABC-type proline 96.9 0.0072 1.6E-07 49.6 8.5 89 176-264 204-308 (309)
206 COG4175 ProV ABC-type proline/ 96.6 0.0064 1.4E-07 51.4 6.2 131 15-199 240-382 (386)
207 KOG2118 Predicted membrane pro 94.5 0.071 1.5E-06 48.8 5.4 120 139-261 201-324 (498)
208 COG1125 OpuBA ABC-type proline 93.5 0.59 1.3E-05 38.7 8.2 86 8-94 205-307 (309)
209 KOG0476 Cl- channel CLC-2 and 92.5 0.15 3.2E-06 48.0 3.9 65 208-272 587-653 (931)
210 KOG2118 Predicted membrane pro 84.4 0.95 2.1E-05 41.6 3.2 124 37-200 200-328 (498)
211 PRK11388 DNA-binding transcrip 79.3 7.7 0.00017 37.0 7.4 94 163-260 61-165 (638)
212 PF05198 IF3_N: Translation in 68.5 9.3 0.0002 25.3 3.6 27 240-266 12-38 (76)
213 COG1419 FlhF Flagellar GTP-bin 60.9 57 0.0012 29.2 8.0 142 16-184 233-375 (407)
214 COG2216 KdpB High-affinity K+ 58.5 29 0.00063 32.0 5.9 43 58-100 413-455 (681)
215 PF05198 IF3_N: Translation in 57.3 32 0.0007 22.7 4.6 34 6-39 12-45 (76)
216 PRK11388 DNA-binding transcrip 55.1 24 0.00053 33.7 5.3 79 7-89 73-163 (638)
217 PF14827 Cache_3: Sensory doma 48.2 20 0.00043 25.7 2.7 17 242-258 93-109 (116)
218 COG1956 GAF domain-containing 42.4 29 0.00062 26.6 2.8 19 73-91 117-135 (163)
219 smart00481 POLIIIAc DNA polyme 38.3 63 0.0014 20.3 3.7 40 157-196 11-50 (67)
220 CHL00199 infC translation init 38.2 48 0.001 26.1 3.6 35 5-39 23-57 (182)
221 COG2216 KdpB High-affinity K+ 36.6 51 0.0011 30.5 3.9 40 226-266 413-452 (681)
222 PF14044 NETI: NETI protein 34.1 48 0.001 20.5 2.4 22 221-242 3-24 (57)
223 PRK00028 infC translation init 32.9 36 0.00077 26.7 2.2 36 225-261 34-71 (177)
224 TIGR00168 infC translation ini 31.7 63 0.0014 25.0 3.3 34 5-38 6-39 (165)
225 PF02743 Cache_1: Cache domain 31.5 52 0.0011 21.5 2.6 16 242-257 18-33 (81)
226 PF13365 Trypsin_2: Trypsin-li 30.1 36 0.00079 23.8 1.8 20 236-255 101-120 (120)
227 CHL00199 infC translation init 30.0 43 0.00094 26.3 2.2 19 227-245 41-59 (182)
228 PF00944 Peptidase_S3: Alphavi 29.3 55 0.0012 24.3 2.4 20 6-25 107-126 (158)
229 TIGR03278 methan_mark_10 putat 29.0 2.7E+02 0.0058 25.1 7.3 82 6-102 306-394 (404)
230 COG0290 InfC Translation initi 27.9 79 0.0017 24.5 3.2 29 239-267 17-45 (176)
231 PRK03972 ribosomal biogenesis 27.1 1.1E+02 0.0024 24.7 4.0 36 220-255 30-66 (208)
232 cd02958 UAS UAS family; UAS is 26.4 2.3E+02 0.0049 19.8 5.4 97 160-266 3-108 (114)
233 PF12282 H_kinase_N: Signal tr 26.0 79 0.0017 23.8 3.0 18 72-89 106-123 (145)
234 PRK00028 infC translation init 25.4 1E+02 0.0022 24.2 3.6 35 5-39 18-52 (177)
235 PF11141 DUF2914: Protein of u 25.3 85 0.0018 20.0 2.6 21 239-259 44-64 (66)
236 PF03948 Ribosomal_L9_C: Ribos 24.5 59 0.0013 22.0 1.9 28 14-41 24-52 (87)
237 COG3284 AcoR Transcriptional a 23.6 1.3E+02 0.0028 28.5 4.4 82 7-91 88-180 (606)
238 PHA00673 acetyltransferase dom 23.3 1.4E+02 0.0031 22.7 3.9 34 226-259 40-73 (154)
239 PF04352 ProQ: ProQ/FINO famil 21.1 1.8E+02 0.0039 20.9 3.9 33 245-277 76-108 (114)
240 PF13673 Acetyltransf_10: Acet 20.5 1.7E+02 0.0037 20.1 3.8 31 229-259 32-62 (117)
No 1
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.83 E-value=5.9e-20 Score=145.52 Aligned_cols=122 Identities=26% Similarity=0.347 Sum_probs=110.7
Q ss_pred cCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCC
Q 023512 140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 219 (281)
Q Consensus 140 ~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~ 219 (281)
.+.++..+|. +++.++.+++|+.++..+|.++++++.||.|+++++|++|..|+...++.... ..+++++|.+++
T Consensus 170 Pk~~V~~~~s--~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~dk~vGiit~~dI~~aia~g~~---~~kV~~~M~k~v 244 (294)
T COG2524 170 PKEKVKNLMS--KKLITVRPDDTLREAAKLFYEKGIRGAPVVDDDKIVGIITLSDIAKAIANGNL---DAKVSDYMRKNV 244 (294)
T ss_pred Ccchhhhhcc--CCceEecCCccHHHHHHHHHHcCccCCceecCCceEEEEEHHHHHHHHHcCCc---cccHHHHhccCC
Confidence 4566888998 88999999999999999999999999999998899999999999744444322 458999999999
Q ss_pred eeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhh
Q 023512 220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 266 (281)
Q Consensus 220 ~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~ 266 (281)
+++.+|+.+.+|+++|..++++++.|+|.+|+++|+||++|++....
T Consensus 245 itI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 245 ITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA 291 (294)
T ss_pred ceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence 99999999999999999999999999999999999999999998754
No 2
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.81 E-value=1.8e-19 Score=142.82 Aligned_cols=126 Identities=21% Similarity=0.339 Sum_probs=112.0
Q ss_pred cCCCCcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHH
Q 023512 35 ELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV 114 (281)
Q Consensus 35 ~~~~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~ 114 (281)
..++-+.++.++|+++++++++++|+.+|.++|.+++++.+||+|+++++|+++..|+..++..
T Consensus 166 m~siPk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~dk~vGiit~~dI~~aia~---------------- 229 (294)
T COG2524 166 MVSIPKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDDKIVGIITLSDIAKAIAN---------------- 229 (294)
T ss_pred eeecCcchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecCCceEEEEEHHHHHHHHHc----------------
Confidence 3466688999999999999999999999999999999999999999999999999999765321
Q ss_pred hhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHH
Q 023512 115 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSK 193 (281)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~ 193 (281)
-.-..+++++|. ++++++.+++.+.||+++|..+++.++.|+| +|+++|++|++
T Consensus 230 -----------------------g~~~~kV~~~M~--k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrT 284 (294)
T COG2524 230 -----------------------GNLDAKVSDYMR--KNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRT 284 (294)
T ss_pred -----------------------CCccccHHHHhc--cCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehH
Confidence 112346889998 8899999999999999999999999999999 99999999999
Q ss_pred HHHHHHHh
Q 023512 194 DILMRVIS 201 (281)
Q Consensus 194 di~~~~~~ 201 (281)
|+++++..
T Consensus 285 DIL~~ia~ 292 (294)
T COG2524 285 DILTRIAG 292 (294)
T ss_pred HHHHHhhc
Confidence 99976643
No 3
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.80 E-value=3.3e-18 Score=148.72 Aligned_cols=235 Identities=21% Similarity=0.229 Sum_probs=172.5
Q ss_pred CCCCccEEEEEcC-CCcEEEEEehHHHHHHHHHhcC------CCCccccccc------------ccCCC-eEecCCchHH
Q 023512 2 AARRVDALLLTDS-NALLCGILTDKDIATRVIAREL------NLEETPVSKV------------MTRNP-TFVLSDTLAV 61 (281)
Q Consensus 2 ~~~~~~~~~v~~~-~~~~~Gi~t~~d~~~~~~~~~~------~~~~~~v~di------------m~~~~-~~v~~~~~l~ 61 (281)
..+++++.|+|+. ...++|+++..|+...+..... ++...+...+ -..++ +++.|..++.
T Consensus 95 ~~~~~~~~p~~~~~~~~~~g~~~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~s~l 174 (381)
T KOG1764|consen 95 VQNGVRAAPLWDSKKQQFVGMLTITDFITVLLRYYKSKSSLDNIEVLEDSQLSKRREVECLLKETLKPPFVSISPESSLL 174 (381)
T ss_pred HhhceeeeccccCccceeEEEEEHHHHHHHHHHhhccCCcHHHHhhhhhhhccccchhhhhhccccCCCceeecCcHHHH
Confidence 3567889999996 4589999999999854432111 1111111111 12244 8999999999
Q ss_pred HHHHHhHhCCCcEeeEee-C-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCChhhHHHHHHHhh
Q 023512 62 EALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERM 139 (281)
Q Consensus 62 ~a~~~m~~~~~~~~pV~d-~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (281)
++...+.+++++++||.| + +.++.+++.+.+++++..+..... ....+
T Consensus 175 ~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~-----~~~~l------------------------- 224 (381)
T KOG1764|consen 175 DAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLP-----LPSLL------------------------- 224 (381)
T ss_pred HHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccc-----cHHHh-------------------------
Confidence 999999999999999998 3 899999999999987655433221 00000
Q ss_pred cCCCccccccC-CCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCcccc-ccccc-
Q 023512 140 FRPSLSTIIPE-KSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTL-VEKVM- 215 (281)
Q Consensus 140 ~~~~v~~~m~~-~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~-v~~~~- 215 (281)
..++.+.-.. ..++..+..++++.+|++.|...+++.+||++ .|..+|+++..|+........+...... +....
T Consensus 225 -~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~ 303 (381)
T KOG1764|consen 225 -SKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALS 303 (381)
T ss_pred -hCCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcCccCccchhHHHHHhh
Confidence 0011111000 04588899999999999999999999999999 7777999999999754444444443333 33322
Q ss_pred -----cCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512 216 -----TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA 267 (281)
Q Consensus 216 -----~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~ 267 (281)
....++|.+++++.+++..|..+++++++|||++|.++|+||.+|++.+...
T Consensus 304 ~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~ 360 (381)
T KOG1764|consen 304 HRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVL 360 (381)
T ss_pred hcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHh
Confidence 2456999999999999999999999999999999999999999999998553
No 4
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.80 E-value=1.3e-18 Score=160.29 Aligned_cols=230 Identities=21% Similarity=0.235 Sum_probs=162.4
Q ss_pred cccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHH-----HHHHhhhhHHHH
Q 023512 40 ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARME-----RAAEKGKAIAAA 113 (281)
Q Consensus 40 ~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~-----~~~~~~~~~~~~ 113 (281)
..+++++|.++++++++++++.+|+++|.+++++.+||+|+ |+++|+++..|+......... ....+...+...
T Consensus 67 ~~~V~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~i~~~ 146 (546)
T PRK14869 67 KPQVRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDILDPEILSKSPTSLENIIRT 146 (546)
T ss_pred CCcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHHHHHh
Confidence 46899999999999999999999999999999999999985 999999999999876554332 111122334444
Q ss_pred HhhHhhhhCCCCCChhhHHHHHH-HhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCC--------
Q 023512 114 VEGVEKHWGTSISGPNTFIETLR-ERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVEN-------- 184 (281)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~-------- 184 (281)
+++.....+... ......+. -.+....+...+.+ .+++.+.... ++...+.+.+.++++++.+.
T Consensus 147 L~~~~l~~~~~~---~~~~~~~~v~a~~~~~~~~~~~~-~~lvi~gdr~---d~~~~ai~~~~~~lIlt~g~~~~~~v~~ 219 (546)
T PRK14869 147 LDGEVLVGAEED---KVEEGKVVVAAMAPESLLERIEE-GDIVIVGDRE---DIQLAAIEAGVRLLIITGGAPVSEDVLE 219 (546)
T ss_pred cCcEEEecCccc---ccccccEEEEEcCHHHHHHhccC-CCEEEEcCcH---HHHHHHHHcCCCEEEECCCCCCCHHHHH
Confidence 433332111110 00000000 00000112223332 3455554443 33445677889999998732
Q ss_pred -----eeeEeeeHHHHHHHHHhcCCCCcccccccccc-CCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEh
Q 023512 185 -----KPRGILTSKDILMRVISQNLPADSTLVEKVMT-PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDV 258 (281)
Q Consensus 185 -----~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~ 258 (281)
.+.+++|..|.+. ...... ...+++++|+ ++++++++++++.++.+.|.+++.+.+||+|++|+++|+||.
T Consensus 220 la~~~~i~ii~t~~dt~~-t~~~l~--~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~ 296 (546)
T PRK14869 220 LAKENGVTVISTPYDTFT-TARLIN--QSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISR 296 (546)
T ss_pred HHHhCCCeEEEecccHHH-HHHHhh--cCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEH
Confidence 3679999999974 333222 2468999999 899999999999999999999999999999999999999999
Q ss_pred hhHHHhhhchHHHHHHHHHHh
Q 023512 259 IHITHAAVATEILLDQIMRQQ 279 (281)
Q Consensus 259 ~di~~~~~~~~~~~~~~~~~~ 279 (281)
.|+++....++.+++++...+
T Consensus 297 ~dl~~~~~~~~iLVD~~e~~q 317 (546)
T PRK14869 297 YHLLSPVRKKVILVDHNEKSQ 317 (546)
T ss_pred HHhhccccCceEEEcCccccc
Confidence 999999888888888877655
No 5
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.72 E-value=7.2e-17 Score=118.82 Aligned_cols=121 Identities=18% Similarity=0.299 Sum_probs=103.7
Q ss_pred CcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHh
Q 023512 39 EETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE 118 (281)
Q Consensus 39 ~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (281)
...+...+|+++++++.|++++.+++.+|.+++++.+||+++++++|-|+-.++.+..+..++
T Consensus 63 ~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~k~VGsItE~~iv~~~le~~e----------------- 125 (187)
T COG3620 63 TRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEEDKVVGSITENDIVRALLEGME----------------- 125 (187)
T ss_pred ceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeCCeeeeeecHHHHHHHHhcccc-----------------
Confidence 466889999999999999999999999999999999999999999999999999887544331
Q ss_pred hhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHH
Q 023512 119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMR 198 (281)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~ 198 (281)
.....++.++|. .++++++++.++..+-+++..+ ..+.|.++|.++|+||+.|++ +
T Consensus 126 -------------------~i~~~~vr~vM~--e~fP~Vs~~~~l~vI~~LL~~~--~AVlV~e~G~~vGIITk~DI~-k 181 (187)
T COG3620 126 -------------------SIRSLRVREVMG--EPFPTVSPDESLNVISQLLEEH--PAVLVVENGKVVGIITKADIM-K 181 (187)
T ss_pred -------------------chhhhhHHHHhc--CCCCcCCCCCCHHHHHHHHhhC--CeEEEEeCCceEEEEeHHHHH-H
Confidence 122335778886 8999999999999998888765 568888999999999999998 4
Q ss_pred HH
Q 023512 199 VI 200 (281)
Q Consensus 199 ~~ 200 (281)
+.
T Consensus 182 ~~ 183 (187)
T COG3620 182 LL 183 (187)
T ss_pred HH
Confidence 43
No 6
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.72 E-value=1.2e-16 Score=129.11 Aligned_cols=131 Identities=25% Similarity=0.286 Sum_probs=114.3
Q ss_pred hhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHh----cCCCCcccccc
Q 023512 138 RMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVIS----QNLPADSTLVE 212 (281)
Q Consensus 138 ~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~----~~~~~~~~~v~ 212 (281)
.+...+..++|. +++++++.++++.++..+|.+|+++.+||+| +.+++|+||++|+++..-. ..+......++
T Consensus 241 ~~~~LtcadIMS--rdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk 318 (382)
T COG3448 241 RMGELTCADIMS--RDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVK 318 (382)
T ss_pred HhccccHHHhcC--ccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcchHHHhhccCCCccc
Confidence 456677899998 8999999999999999999999999999999 8899999999999852211 11122345789
Q ss_pred ccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhchHH
Q 023512 213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATEI 270 (281)
Q Consensus 213 ~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~~~ 270 (281)
.+|+....++.++++..+++-.+.+.+.+++||+|+.|+++||||.+|++.+..+...
T Consensus 319 ~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r~~~ 376 (382)
T COG3448 319 GIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRNWS 376 (382)
T ss_pred ccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999776544
No 7
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.71 E-value=2.8e-16 Score=114.76 Aligned_cols=111 Identities=29% Similarity=0.347 Sum_probs=97.5
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-C-CeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHH
Q 023512 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 230 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 230 (281)
++.+++++.++.++++.|.+.+.+++||++ + |+++|+++..|+++.+..........++.++|..+++++++++++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 81 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIKY 81 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHHH
Confidence 478899999999999999988999999998 5 89999999999985555543333345788999888999999999999
Q ss_pred HHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512 231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (281)
Q Consensus 231 ~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~ 264 (281)
+++.|.+.+..++||+++ |+++|+|+..|++++
T Consensus 82 ~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~~ 114 (114)
T cd04630 82 CARLMERTNIRRAPVVEN-NELIGIISLTDIFLA 114 (114)
T ss_pred HHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhcC
Confidence 999999999999999986 999999999999864
No 8
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.71 E-value=3.3e-16 Score=114.41 Aligned_cols=110 Identities=23% Similarity=0.265 Sum_probs=96.0
Q ss_pred eeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHHH
Q 023512 154 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (281)
Q Consensus 154 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~ 232 (281)
+.++++++++.++++.|.+.+..++||++ +|++.|+++..|+++............++.++|..++.++.+++++.+++
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~ 82 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLHDVW 82 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCCHHHHH
Confidence 67789999999999999999999999998 88999999999997434321222234578899999999999999999999
Q ss_pred HHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (281)
Q Consensus 233 ~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~ 263 (281)
+.|.+++..++||+|++|+++|+|+.+|+++
T Consensus 83 ~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 83 QVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred HHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 9999999999999998899999999999975
No 9
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.70 E-value=8.3e-16 Score=135.96 Aligned_cols=163 Identities=13% Similarity=0.148 Sum_probs=130.5
Q ss_pred HHHHhcCCCCcccccccccC--CCeEecCCchHHHHHHHhHhCCCcEeeEeeC--CeEEEEEehHHHHHHHHHHHHHHHH
Q 023512 30 RVIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAE 105 (281)
Q Consensus 30 ~~~~~~~~~~~~~v~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~--~~~vGvi~~~dll~~~~~~~~~~~~ 105 (281)
.++.+...+.+.+++|+|++ ++++++.++++.++++.+.+++++++||+++ ++++|+++.+|++.+...
T Consensus 180 ~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~------- 252 (408)
T TIGR03520 180 KILQGIVSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNK------- 252 (408)
T ss_pred HHHHHHhccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhcc-------
Confidence 44556779999999999997 7899999999999999999999999999985 699999999999753100
Q ss_pred hhhhHHHHHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CC
Q 023512 106 KGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-EN 184 (281)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~ 184 (281)
...++.++| +++.++++++++.++++.|++++.+.++|+| .|
T Consensus 253 ----------------------------------~~~~l~~~~---~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G 295 (408)
T TIGR03520 253 ----------------------------------KNFDWQSLL---REPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYG 295 (408)
T ss_pred ----------------------------------CCCCHHHHc---CCCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCC
Confidence 001133344 4588999999999999999999999999999 79
Q ss_pred eeeEeeeHHHHHHHHHhcCCCCccccccccc---cCCCeeeeCCCCHHHHHHHhHh
Q 023512 185 KPRGILTSKDILMRVISQNLPADSTLVEKVM---TPNPECATIDTPIVDALHIMHD 237 (281)
Q Consensus 185 ~~~Givt~~di~~~~~~~~~~~~~~~v~~~~---~~~~~~v~~~~~l~~~~~~~~~ 237 (281)
...|+||.+|+++.++++..+..+ .-.+.+ ....+.++...++.++.+.|.-
T Consensus 296 ~~~GiVT~eDileeivgei~de~d-~~~~~i~~~~~~~~~v~G~~~l~~l~~~l~~ 350 (408)
T TIGR03520 296 GTSGLVTLEDIIEEIVGDISDEFD-DEDLIYSKIDDNNYVFEGKTSLKDFYKILKL 350 (408)
T ss_pred CEEEEEEHHHHHHHHhCCCCCcCC-cCccceEEeCCCeEEEEeccCHHHHHHHhCC
Confidence 999999999999888776544322 112212 2456889999999999998844
No 10
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.69 E-value=2.1e-16 Score=116.43 Aligned_cols=121 Identities=24% Similarity=0.283 Sum_probs=107.6
Q ss_pred CCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCe
Q 023512 141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE 220 (281)
Q Consensus 141 ~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~ 220 (281)
..+...+|+ .|++.+.+++++.+++++|..+|++.+||+++|+++|-||..++.+..+....+.....+.++|...++
T Consensus 64 ~ita~~iM~--spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM~e~fP 141 (187)
T COG3620 64 RITAKTIMH--SPVVSVSPDDSISDVVNLMRDKGISQLPVIEEDKVVGSITENDIVRALLEGMESIRSLRVREVMGEPFP 141 (187)
T ss_pred eEeHhhhcc--CCeeEECchhhHHHHHHHHHHcCCccCceeeCCeeeeeecHHHHHHHHhccccchhhhhHHHHhcCCCC
Confidence 345678887 899999999999999999999999999999999999999999998666665555667789999999999
Q ss_pred eeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhh
Q 023512 221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 266 (281)
Q Consensus 221 ~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~ 266 (281)
+++++.+++.+..++..++ ++.|+ ++|+++|+||+.|+++...
T Consensus 142 ~Vs~~~~l~vI~~LL~~~~--AVlV~-e~G~~vGIITk~DI~k~~~ 184 (187)
T COG3620 142 TVSPDESLNVISQLLEEHP--AVLVV-ENGKVVGIITKADIMKLLA 184 (187)
T ss_pred cCCCCCCHHHHHHHHhhCC--eEEEE-eCCceEEEEeHHHHHHHHh
Confidence 9999999999999998876 57777 5899999999999998754
No 11
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.69 E-value=3.7e-16 Score=111.01 Aligned_cols=94 Identities=21% Similarity=0.243 Sum_probs=84.9
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-C-CeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHH
Q 023512 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 230 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 230 (281)
.+.++++++++.++.+.|.+++.+++||++ + |+++|++|..|+.+.+. +.++.+++++.+
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~------------------~~~v~~~~~l~~ 63 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR------------------LVSIHPERSLFD 63 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee------------------eEEeCCCCcHHH
Confidence 478899999999999999999999999998 4 79999999999963111 778999999999
Q ss_pred HHHHhHhCCCCeeeEecCC-CcEEEEEEhhhHHHh
Q 023512 231 ALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITHA 264 (281)
Q Consensus 231 ~~~~~~~~~~~~l~Vv~~~-~~~~Gvis~~di~~~ 264 (281)
|++.|.+++.+++||+|++ |+++|+||.+|++++
T Consensus 64 a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~~ 98 (98)
T cd04618 64 AALLLLKNKIHRLPVIDPSTGTGLYILTSRRILKF 98 (98)
T ss_pred HHHHHHHCCCCEeeEEECCCCCceEEeehhhhhcC
Confidence 9999999999999999987 899999999999863
No 12
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.69 E-value=1.2e-15 Score=128.97 Aligned_cols=173 Identities=13% Similarity=0.134 Sum_probs=131.9
Q ss_pred EEEehHHHHHHHHHhcCCCCcccccccccC--CCeEecCCchHHHHHHHhHhCCCcEeeEeeC--CeEEEEEehHHHHHH
Q 023512 20 GILTDKDIATRVIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYD 95 (281)
Q Consensus 20 Gi~t~~d~~~~~~~~~~~~~~~~v~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~--~~~vGvi~~~dll~~ 95 (281)
|.++..+ +.++.+...+.+.+|+++|++ ++.++++++++.++++.+.+++++++||+++ ++++|+++.+|++..
T Consensus 48 g~l~~~e--~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~ 125 (292)
T PRK15094 48 DLIDEDT--RDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPF 125 (292)
T ss_pred CCCCHHH--HHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhH
Confidence 4444443 244556678999999999997 6899999999999999999999999999984 789999999999753
Q ss_pred HHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCc
Q 023512 96 AIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRL 175 (281)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~ 175 (281)
.... .....+.++| .++.++++++++.++++.|++++.
T Consensus 126 ~~~~---------------------------------------~~~~~l~~l~---r~~~~V~e~~~l~~~L~~m~~~~~ 163 (292)
T PRK15094 126 MRSD---------------------------------------AEAFSMDKVL---RQAVVVPESKRVDRMLKEFRSQRY 163 (292)
T ss_pred hhcc---------------------------------------CCcCCHHHHc---CCCcCcCCCCcHHHHHHHHHhcCC
Confidence 1000 0001234455 345689999999999999999999
Q ss_pred cEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccc-cccc--cCCCeeeeCCCCHHHHHHHhH
Q 023512 176 SSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLV-EKVM--TPNPECATIDTPIVDALHIMH 236 (281)
Q Consensus 176 ~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v-~~~~--~~~~~~v~~~~~l~~~~~~~~ 236 (281)
+.+||+| .|.++|+||.+|++..+.+...+..+..- .++. ....+.++...++.++.+.+-
T Consensus 164 ~~a~VvDe~G~viGiVTleDIle~ivGei~de~d~~~~~~i~~~~~~~~~v~G~~~l~dl~~~l~ 228 (292)
T PRK15094 164 HMAIVIDEFGGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQLSRHTWTVRALASIEDFNEAFG 228 (292)
T ss_pred EEEEEEeCCCCEEEEeEHHHHHHHHhCCCccccccccccccEEeCCCeEEEEeccCHHHHHHHhC
Confidence 9999999 78899999999999878765443322111 1122 345688999999999988873
No 13
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.69 E-value=8.2e-16 Score=134.71 Aligned_cols=135 Identities=26% Similarity=0.351 Sum_probs=118.2
Q ss_pred CCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCC
Q 023512 141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 219 (281)
Q Consensus 141 ~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~ 219 (281)
..++.++++ .+++++++.+++.+|...|..+|.+.+++++ ++...||||.+|+..+.+.++.+. ..+++++|+.++
T Consensus 148 ~trv~~~~~--~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~-~~~V~evmT~p~ 224 (610)
T COG2905 148 LTRVGEVKT--LPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSK-TQKVSEVMTSPV 224 (610)
T ss_pred HHHHHHHhc--CCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCc-ccchhhhhccCc
Confidence 344666666 7899999999999999999999999888888 999999999999998888776554 559999999999
Q ss_pred eeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhh-chHHHHHHHHHHh
Q 023512 220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV-ATEILLDQIMRQQ 279 (281)
Q Consensus 220 ~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~-~~~~~~~~~~~~~ 279 (281)
++++.++.+.+|+-.|.+++++++||.+ +|+++|++|.+||++... +...++.++.++.
T Consensus 225 ~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s~~~~vl~~~i~~a~ 284 (610)
T COG2905 225 ISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFSQNSIVLVKRIARAS 284 (610)
T ss_pred eeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhCCCceeehHHhhhhh
Confidence 9999999999999999999999999986 899999999999999976 6666666655543
No 14
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.69 E-value=9.3e-16 Score=113.07 Aligned_cols=112 Identities=13% Similarity=0.156 Sum_probs=91.4
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCcccccc------ccccCCCeeeeCC
Q 023512 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVE------KVMTPNPECATID 225 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~------~~~~~~~~~v~~~ 225 (281)
++.+++++.++.++.+.|.+++.+++||++ +|+++|+++.+|++.............++. +.|..++.++.++
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 81 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCSPD 81 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCCCCeEEcCC
Confidence 578899999999999999999999999998 889999999999974332222111111222 2334567899999
Q ss_pred CCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512 226 TPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (281)
Q Consensus 226 ~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~ 264 (281)
+++.++++.|.+++.+++||+|++|+++|+||..|++++
T Consensus 82 ~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~~ 120 (120)
T cd04641 82 DCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQF 120 (120)
T ss_pred CcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhcC
Confidence 999999999999999999999988999999999999863
No 15
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.68 E-value=3.3e-16 Score=126.72 Aligned_cols=130 Identities=20% Similarity=0.320 Sum_probs=111.7
Q ss_pred CCcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhh
Q 023512 38 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG 116 (281)
Q Consensus 38 ~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~ 116 (281)
..+.+-.|+|++.++++.+++++.+|.++|.+++++.+||+|+ .+++|++++.|+++...
T Consensus 242 ~~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~------------------- 302 (382)
T COG3448 242 MGELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHAR------------------- 302 (382)
T ss_pred hccccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccC-------------------
Confidence 3467889999999999999999999999999999999999997 89999999999976310
Q ss_pred HhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHH
Q 023512 117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI 195 (281)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di 195 (281)
-.+...++ .+...+++.+|+ +++.++.++++..+++-.+.+.+.+++||+| +|+++||||+.|+
T Consensus 303 ------------~~p~qrlr-~~~~~~vk~imt--~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDl 367 (382)
T COG3448 303 ------------PSPFQRLR-FLRPPTVKGIMT--TPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDL 367 (382)
T ss_pred ------------cchHHHhh-ccCCCccccccc--CcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHH
Confidence 01122222 456778999998 7899999999999999999999999999999 9999999999999
Q ss_pred HHHHHh
Q 023512 196 LMRVIS 201 (281)
Q Consensus 196 ~~~~~~ 201 (281)
+..++.
T Consensus 368 iaal~r 373 (382)
T COG3448 368 IAALYR 373 (382)
T ss_pred HHHHHH
Confidence 865554
No 16
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.68 E-value=1.2e-15 Score=111.03 Aligned_cols=112 Identities=58% Similarity=0.840 Sum_probs=97.5
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHHH
Q 023512 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~ 232 (281)
++.++.++.++.++++.|.+.+.++++|+++|+++|+++..|++..+..........++.++|...+.++++++++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~~~~ 81 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDGNKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVLEAL 81 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHHHHH
Confidence 46789999999999999988888999999889999999999997555544333322578899988899999999999999
Q ss_pred HHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (281)
Q Consensus 233 ~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~ 264 (281)
+.|.+++..++||++++|+++|+||..|++.+
T Consensus 82 ~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~~ 113 (113)
T cd04587 82 HLMVQGKFRHLPVVDKSGQVVGLLDVTKLTHA 113 (113)
T ss_pred HHHHHcCCCcccEECCCCCEEEEEEHHHhccC
Confidence 99999999999999988999999999999864
No 17
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.68 E-value=1.2e-15 Score=110.97 Aligned_cols=107 Identities=23% Similarity=0.266 Sum_probs=93.6
Q ss_pred eeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHHH
Q 023512 154 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (281)
Q Consensus 154 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~ 232 (281)
+.+++++.++.++++.|.+.+.+.++|++ +|+++|+++..|+. ..... .....++.++|...+.++.+++++.+++
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~-~~~~~--~~~~~~v~~~~~~~~~~v~~~~~l~~al 79 (111)
T cd04603 3 TVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLL-EIGPN--DYETLKVCEVYIVPVPIVYCDSKVTDLL 79 (111)
T ss_pred eEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHH-hhccc--cccccChhheeecCCcEECCCCcHHHHH
Confidence 67889999999999999988899999998 78999999999996 33211 1113468899988889999999999999
Q ss_pred HHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (281)
Q Consensus 233 ~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~ 263 (281)
+.|.+++.+++||+|++|+++|+||.+|+++
T Consensus 80 ~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 80 RIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred HHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 9999999999999998899999999999985
No 18
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.67 E-value=1.5e-15 Score=110.96 Aligned_cols=111 Identities=27% Similarity=0.368 Sum_probs=96.0
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHH
Q 023512 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 231 (281)
++.++.++.++.++.+.|.+.+.+++||++ +|+++|+++..|++.... ........++.++|...+.++.+++++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~ 80 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALE-ADEAGEPSAVDEVATPPLLTVHPDEPLAHA 80 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHh-cccccccccHHHhccCCceEECCCCCHHHH
Confidence 467889999999999999988999999999 799999999999974343 332222345888888899999999999999
Q ss_pred HHHhHhCCCCeeeEecCC--CcEEEEEEhhhHHHh
Q 023512 232 LHIMHDGKFLHLPVVDRD--GDVVDVVDVIHITHA 264 (281)
Q Consensus 232 ~~~~~~~~~~~l~Vv~~~--~~~~Gvis~~di~~~ 264 (281)
++.|.+++.+++||+|++ |+++|+||.+|++++
T Consensus 81 l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~~ 115 (115)
T cd04593 81 LDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLLA 115 (115)
T ss_pred HHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhcC
Confidence 999999999999999977 799999999999864
No 19
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.66 E-value=1.8e-15 Score=112.03 Aligned_cols=112 Identities=27% Similarity=0.401 Sum_probs=97.3
Q ss_pred CceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCC----------CccccccccccCCCe
Q 023512 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP----------ADSTLVEKVMTPNPE 220 (281)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~----------~~~~~v~~~~~~~~~ 220 (281)
+++.+++++.++.++.+.|.+.+++++||++ +|+++|+++..|++. ....... ....++.++|.+.+.
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLR-HARPDGRRPLRGRLRGRDKPETVGDIMSPPVV 80 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHh-hhcccccchhhhhhhcccccccHHHhccCCCe
Confidence 5688899999999999999988999999998 699999999999974 3332221 224468889989999
Q ss_pred eeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512 221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (281)
Q Consensus 221 ~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~ 264 (281)
++++++++.++++.|.+.+.+++||++++|+++|+||..|++++
T Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~~ 124 (124)
T cd04600 81 TVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIAA 124 (124)
T ss_pred eeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhcC
Confidence 99999999999999999999999999988999999999999864
No 20
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.66 E-value=3.6e-15 Score=108.52 Aligned_cols=112 Identities=33% Similarity=0.481 Sum_probs=97.4
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHHH
Q 023512 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~ 232 (281)
++.++.+++++.++++.|.+.+.+++||+++|++.|+++..|++.+.+.........++.++|...+.++.+++++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 81 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCENDRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVDEAA 81 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHHHHH
Confidence 46789999999999999998899999999989999999999996455544333333348899988999999999999999
Q ss_pred HHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (281)
Q Consensus 233 ~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~ 264 (281)
+.|.+.+.+++||++++|+++|+++..|++++
T Consensus 82 ~~~~~~~~~~~~V~~~~~~~~G~it~~di~~~ 113 (113)
T cd04622 82 RLMREHQVRRLPVVDDDGRLVGIVSLGDLARA 113 (113)
T ss_pred HHHHHcCCCeeeEECCCCcEEEEEEHHHhhcC
Confidence 99999999999999977999999999999763
No 21
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.66 E-value=2.2e-15 Score=110.70 Aligned_cols=110 Identities=21% Similarity=0.259 Sum_probs=94.6
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccC--CCeeeeCCCCHH
Q 023512 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDTPIV 229 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~ 229 (281)
++.+++++.++.++++.|..++..++||++ +|+++|+++..|+++..... ......++.++|.. .+.++++++++.
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~l~ 80 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGG-ADLQKVPVGVIMTRMPNITTTTPEESVL 80 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcC-CCccCCCHHHHhCCCCCcEEECCCCcHH
Confidence 478899999999999999988999999998 68999999999997555432 22224467788874 688999999999
Q ss_pred HHHHHhHhCCCCeeeEecCC---CcEEEEEEhhhHHH
Q 023512 230 DALHIMHDGKFLHLPVVDRD---GDVVDVVDVIHITH 263 (281)
Q Consensus 230 ~~~~~~~~~~~~~l~Vv~~~---~~~~Gvis~~di~~ 263 (281)
++++.|.+++.+++||+|++ |+++|+||.+|+++
T Consensus 81 ~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 81 EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred HHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 99999999999999999976 69999999999875
No 22
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.65 E-value=3.5e-15 Score=108.44 Aligned_cols=111 Identities=33% Similarity=0.482 Sum_probs=95.8
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHH
Q 023512 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 231 (281)
++.+++++.++.++++.|.+.+++++||++ +++++|+++..|+++.+..........++.++|...+.++++++++.++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 81 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVDEA 81 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHHHH
Confidence 467789999999999999988999999998 6899999999999754443322222447888998889999999999999
Q ss_pred HHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (281)
Q Consensus 232 ~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~ 264 (281)
++.|.+.+.+++||+++ |+++|+||..|++++
T Consensus 82 l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~~ 113 (113)
T cd04623 82 MALMTERRFRHLPVVDG-GKLVGIVSIGDVVKA 113 (113)
T ss_pred HHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhcC
Confidence 99999999999999986 999999999999763
No 23
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.65 E-value=1.4e-15 Score=131.61 Aligned_cols=124 Identities=22% Similarity=0.278 Sum_probs=106.5
Q ss_pred cCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCC
Q 023512 140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN 218 (281)
Q Consensus 140 ~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~ 218 (281)
...++.++|...+++.++++++++.++++.|.+.+...+||++ +|+++|+||.+|+. +...........++.++|.++
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~-~~~~~~~~~~~~~v~~im~~~ 278 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLR-RVFDMGIDLRQASIADVMTPG 278 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHH-HHHhcCCCcccCCHHHhcCCC
Confidence 4456889997323899999999999999999988888888888 89999999999996 555443233345799999999
Q ss_pred CeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhh
Q 023512 219 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 265 (281)
Q Consensus 219 ~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~ 265 (281)
+.++.+++++.++++.|.+++.+++||++ +|+++|+||..|++++.
T Consensus 279 ~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~~ 324 (326)
T PRK10892 279 GIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRAG 324 (326)
T ss_pred CEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhcc
Confidence 99999999999999999999999999997 68999999999999863
No 24
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.65 E-value=3.9e-15 Score=108.78 Aligned_cols=111 Identities=23% Similarity=0.323 Sum_probs=93.3
Q ss_pred ceeEeCCCCcHHHHHHHHHHcC-ccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCC--CCHH
Q 023512 153 KVVTISPTDTVLMATKKMLELR-LSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATID--TPIV 229 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~-~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~--~~l~ 229 (281)
++.+++++.++.++++.|...+ ...++|.++|+++|+++..|+++ ...........++.++|...+.++.++ +++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~-~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~l~ 80 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEKGRLLGIFTERDIVR-LTAIGKDLSDLPIGEVMTQPVVTLQESEIQDIF 80 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCCCcEEEEEeHHHHHH-HHhcCCCccccCHHHhcCCCcEEEecccccCHH
Confidence 3667899999999999998877 67788888889999999999974 443322222347888998888888887 7899
Q ss_pred HHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512 230 DALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (281)
Q Consensus 230 ~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~ 264 (281)
++++.|.+++...+||+|++|+++|+||..|++++
T Consensus 81 ~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~~ 115 (115)
T cd04620 81 TALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQV 115 (115)
T ss_pred HHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhcC
Confidence 99999999999999999988999999999999863
No 25
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.64 E-value=5.9e-15 Score=107.23 Aligned_cols=111 Identities=26% Similarity=0.394 Sum_probs=94.1
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHHH
Q 023512 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~ 232 (281)
.+.+++++.++.++++.|.+.+..+++|.++|+++|+++..|+++............++.++|...+.++++++++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~ 81 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVMERGELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSIDEVR 81 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHHHHH
Confidence 36778999999999999988788888888889999999999997544432222223478899988889999999999999
Q ss_pred HHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (281)
Q Consensus 233 ~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~ 264 (281)
+.|.+++..++||++ +|+++|++|..|++++
T Consensus 82 ~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~~ 112 (112)
T cd04625 82 RLMVERHLRYLPVLD-GGTLLGVISFHDVAKA 112 (112)
T ss_pred HHHHHcCCCeeeEEE-CCEEEEEEEHHHhhcC
Confidence 999999999999998 6999999999999864
No 26
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.64 E-value=1.5e-15 Score=112.79 Aligned_cols=112 Identities=17% Similarity=0.128 Sum_probs=96.4
Q ss_pred CceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHH
Q 023512 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 230 (281)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 230 (281)
+++.+++++.++.++++.|.+++.+.+||++ +|+++|+++.+|++..+...... ...++.++|.+++.++.+++++.+
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~~-~~~~v~~im~~~~~~v~~~~~~~~ 80 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKVQ-PSDPVSKALYKQFKRVNKNDTLGK 80 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhccC-CCCcHHHHhhccceecCCCCCHHH
Confidence 5688899999999999999999999999998 78999999999998555544333 345899999999999999999999
Q ss_pred HHHHhH---------hCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512 231 ALHIMH---------DGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (281)
Q Consensus 231 ~~~~~~---------~~~~~~l~Vv~~~~~~~Gvis~~di~~~ 264 (281)
+.+++. +.+.+.+||++++|+++|+||.+|++++
T Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~ 123 (124)
T cd04608 81 LSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY 123 (124)
T ss_pred HHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence 999653 3357788899988999999999999976
No 27
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.64 E-value=4.7e-15 Score=132.51 Aligned_cols=156 Identities=24% Similarity=0.306 Sum_probs=124.9
Q ss_pred HHHHHHHhhhhHHHHHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEE
Q 023512 99 RMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSA 178 (281)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~ 178 (281)
.|+..++...+++.+..| |....+.+...+...+.+...++.++|. +++.++.+++++.++++.|.+.+.+++
T Consensus 50 ~mdtvTe~~MAi~~A~~G-----GigvIh~n~~i~~qae~v~~VKv~eim~--~~pvtv~p~~tI~eA~~lm~~~~~~~~ 122 (475)
T TIGR01303 50 NMTAVAGRRMAETVARRG-----GIVILPQDLPIPAVKQTVAFVKSRDLVL--DTPITLAPHDTVSDAMALIHKRAHGAA 122 (475)
T ss_pred cchhhHHHHHHHHHHHCC-----CEEEEeCCCCHHHHHHHHhhcchhhccc--cCCeEECCCCCHHHHHHHHHhcCCeEE
Confidence 355556666666666555 3333333434444455555666778887 778999999999999999999999999
Q ss_pred EEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEh
Q 023512 179 VVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDV 258 (281)
Q Consensus 179 ~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~ 258 (281)
||+++++++|+||.+|+. .. . ...+++++|+++++++++++++.++++.|.+++.+.+||+|++|+++|+||.
T Consensus 123 vVvD~gklvGIVT~rDL~-~~-----~-~~~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~ 195 (475)
T TIGR01303 123 VVILEDRPVGLVTDSDLL-GV-----D-RFTQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTR 195 (475)
T ss_pred EEEECCEEEEEEEHHHhh-cC-----C-CCCCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEH
Confidence 999988999999999994 11 1 1347999999999999999999999999999999999999988999999999
Q ss_pred hhHHHhhhch
Q 023512 259 IHITHAAVAT 268 (281)
Q Consensus 259 ~di~~~~~~~ 268 (281)
+||+++..++
T Consensus 196 ~DLl~~~~~~ 205 (475)
T TIGR01303 196 TGALRATIYT 205 (475)
T ss_pred HHHHHHHhCC
Confidence 9999986655
No 28
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.64 E-value=9.1e-15 Score=105.96 Aligned_cols=109 Identities=30% Similarity=0.461 Sum_probs=95.5
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHHH
Q 023512 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~ 232 (281)
++.+++++.++.++++.|.+.+.+.+||.++++++|+++.+|+++ ....... ...++.++|.+++.++++++++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~~l~~-~~~~~~~-~~~~v~~~~~~~~~~~~~~~~l~~~l 79 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDDGRPLGIVTERDILR-LLASGPD-LQTPVGEVMSSPLLTVPADTSLYDAR 79 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEeHHHHHH-HHhcCCC-CCcCHHHhcCCCceEECCCCCHHHHH
Confidence 467899999999999999988899999999899999999999974 4333222 34578899988999999999999999
Q ss_pred HHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (281)
Q Consensus 233 ~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~ 263 (281)
+.|.+.+.+++||+|++|+++|+|+..|+++
T Consensus 80 ~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 80 QLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred HHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 9999999999999998899999999999975
No 29
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.64 E-value=4.2e-15 Score=108.69 Aligned_cols=110 Identities=26% Similarity=0.275 Sum_probs=92.9
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCc----cccccccccCCCeeeeCCCC
Q 023512 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPAD----STLVEKVMTPNPECATIDTP 227 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~----~~~v~~~~~~~~~~v~~~~~ 227 (281)
++.++++++++.++++.|.+.+.+++||++ +|+++|+++..|+++.......... ..++.++|.+.+.++.++++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~ 81 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIIDDAD 81 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcCCCceecCCCC
Confidence 477899999999999999998999999999 7899999999999754432211111 34688899889999999999
Q ss_pred HHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512 228 IVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (281)
Q Consensus 228 l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~ 264 (281)
+.++++.|.+.+ .+||++++|+++|++|..|++++
T Consensus 82 l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~~ 116 (116)
T cd04643 82 IEEILHLLIDQP--FLPVVDDDGIFIGIITRREILKA 116 (116)
T ss_pred HHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhcC
Confidence 999999998865 59999988999999999999864
No 30
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.64 E-value=5.4e-15 Score=107.61 Aligned_cols=109 Identities=20% Similarity=0.230 Sum_probs=95.1
Q ss_pred eeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHHH
Q 023512 154 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (281)
Q Consensus 154 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~ 232 (281)
+..+.+++++.++++.|.+.+.+++||++ +|+++|+++..|+++..... ......++.++|..++.++++++++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~-~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 81 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALES-EELKDAKVREVMNSPVITIDANDSIAKAR 81 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhh-hhhcCCcHHHhccCCceEECCCCcHHHHH
Confidence 67789999999999999998999999998 78999999999997444432 22234578889988899999999999999
Q ss_pred HHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (281)
Q Consensus 233 ~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~ 263 (281)
+.|.+++...+||++++|+++|+++..|+++
T Consensus 82 ~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 82 WLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred HHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 9999999999999998899999999999974
No 31
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.63 E-value=1.4e-15 Score=136.32 Aligned_cols=188 Identities=18% Similarity=0.169 Sum_probs=147.0
Q ss_pred EEEehHHHHHHHHHhcCCCCcccccccccCCCeEecCCchHHHHHHHhHh-----CCCcEeeEeeC-CeEEEEEehHHHH
Q 023512 20 GILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQ-----GKFRHLPVVEN-GEVIALLDIAKCL 93 (281)
Q Consensus 20 Gi~t~~d~~~~~~~~~~~~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~-----~~~~~~pV~d~-~~~vGvi~~~dll 93 (281)
+.++..+ +....+-..+.+.+++++|++++.++++++|+.+|++.|.+ ++...+||+|+ ++++|+++.+|++
T Consensus 112 ~~l~~~e--r~~i~~ll~~~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl 189 (449)
T TIGR00400 112 ASSTEEE--RKAINLLLSYSDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLI 189 (449)
T ss_pred HcCCHHH--HHHHHHHhCCCcchHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHh
Confidence 3444443 23344455788899999999999999999999999999975 45667888875 8999999999986
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHc
Q 023512 94 YDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL 173 (281)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~ 173 (281)
.. ....++.++|. +++.++++++++.++++.|.++
T Consensus 190 ~a-------------------------------------------~~~~~v~~im~--~~~~~v~~~~~~~eal~~m~~~ 224 (449)
T TIGR00400 190 LA-------------------------------------------KPEEILSSIMR--SSVFSIVGVNDQEEVARLIQKY 224 (449)
T ss_pred cC-------------------------------------------CCCCcHHHHhC--CCCeeECCCCCHHHHHHHHHHc
Confidence 31 01124666776 6688899999999999999999
Q ss_pred CccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcE
Q 023512 174 RLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDV 252 (281)
Q Consensus 174 ~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~ 252 (281)
+...+||+| +|+++|+||.+|++..+..+ ..+++|.....+..+++.+..+...+.+++..+++|. .+
T Consensus 225 ~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~-------~~ed~~~~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~----~~ 293 (449)
T TIGR00400 225 DFLAVPVVDNEGRLVGIVTVDDIIDVIQSE-------ATEDFYMIAAVKPLDDSYFDTSILVMAKNRIIWLLVL----LV 293 (449)
T ss_pred CCCEEeEEcCCCeEEEEEEHHHHHHHHHhh-------hHHHHHHhcCCCCCcchhhhchHHHHHHhccchHHHH----HH
Confidence 999999999 89999999999998544432 2367777666555567888999999999999999886 36
Q ss_pred EEEEEhhhHHHhhh
Q 023512 253 VDVVDVIHITHAAV 266 (281)
Q Consensus 253 ~Gvis~~di~~~~~ 266 (281)
.|+++ ..++..+.
T Consensus 294 ~~~~t-~~ii~~f~ 306 (449)
T TIGR00400 294 SSTFT-ATIISNYE 306 (449)
T ss_pred HHHHH-HHHHHHHH
Confidence 67777 66666543
No 32
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.63 E-value=5.4e-15 Score=132.27 Aligned_cols=127 Identities=26% Similarity=0.288 Sum_probs=110.8
Q ss_pred HHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccc
Q 023512 133 ETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLV 211 (281)
Q Consensus 133 ~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v 211 (281)
+...+.+...++.++|. .++.++++++++.++++.|.+++++++||+| +++++|+||.+|+. .. .. ..++
T Consensus 80 ~~q~~~l~~VKv~~iMi--~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~-~~-----~~-~~~V 150 (479)
T PRK07807 80 DVVAEVVAWVKSRDLVF--DTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCA-GV-----DR-FTQV 150 (479)
T ss_pred HHHHHHHhhcccccccc--cCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHh-cC-----cc-CCCH
Confidence 34444555666788887 8899999999999999999999999999998 88999999999994 21 11 2479
Q ss_pred cccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhch
Q 023512 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT 268 (281)
Q Consensus 212 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~ 268 (281)
.++|++++.++++++++.++++.|.+++.+.+||+|++|+++|+||.+||+++...+
T Consensus 151 ~diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~ 207 (479)
T PRK07807 151 RDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYT 207 (479)
T ss_pred HHhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCC
Confidence 999999999999999999999999999999999999889999999999999986655
No 33
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.63 E-value=6.9e-15 Score=108.88 Aligned_cols=110 Identities=20% Similarity=0.301 Sum_probs=90.5
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-C-CeeeEeeeHHHHHHHHHhcCCC--C------ccccccccccCCCeee
Q 023512 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLP--A------DSTLVEKVMTPNPECA 222 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~di~~~~~~~~~~--~------~~~~v~~~~~~~~~~v 222 (281)
++.++++++++.++++.|.+.+++++||++ + |+++|+++..|+++.+...... . ......+++..++.++
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVISI 81 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceEe
Confidence 477899999999999999988899999999 5 8999999999997543322110 0 0011224677888999
Q ss_pred eCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHH
Q 023512 223 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHIT 262 (281)
Q Consensus 223 ~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~ 262 (281)
++++++.+|++.|.+++.+++||+|++|+++|+||..|+-
T Consensus 82 ~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 82 NGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred CCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence 9999999999999999999999999889999999999974
No 34
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.63 E-value=6.8e-15 Score=107.10 Aligned_cols=111 Identities=22% Similarity=0.291 Sum_probs=96.7
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHH
Q 023512 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 231 (281)
++.++++++++.++++.|.+.+..++||++ +|++.|+++..|++ +...........++.++|.+.+.++++++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~-~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~ 80 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIR-EILFDPSLYDLVVASDIMTKPPVVVYPEDSLEDA 80 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHH-HHHhcccccccEEHHHhccCCCcEEcCCCCHHHH
Confidence 477899999999999999988999999999 78999999999997 4444333222357889999999999999999999
Q ss_pred HHHhHhCCCCeeeEecC-CCcEEEEEEhhhHHHh
Q 023512 232 LHIMHDGKFLHLPVVDR-DGDVVDVVDVIHITHA 264 (281)
Q Consensus 232 ~~~~~~~~~~~l~Vv~~-~~~~~Gvis~~di~~~ 264 (281)
++.|.+.+.+++||+++ .|+++|+++..|++.+
T Consensus 81 ~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~~ 114 (114)
T cd04613 81 LKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLSA 114 (114)
T ss_pred HHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhcC
Confidence 99999999999999987 7999999999999753
No 35
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.63 E-value=4e-15 Score=128.46 Aligned_cols=123 Identities=19% Similarity=0.274 Sum_probs=105.6
Q ss_pred CCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCC
Q 023512 141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 219 (281)
Q Consensus 141 ~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~ 219 (281)
..++.++|....++.+++++.++.++.+.|...+...+||+| +|+++|+|+..|+. +.+...... ..++.++|.+++
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~-~~~~~~~~~-~~~v~~im~~~~ 273 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLR-RWLVGGGAL-TTPVNEAMTRGG 273 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHH-HHHhCCCCc-CCcHHHhcCCCC
Confidence 346888897322399999999999999999888889999999 88999999999996 444332222 346899999999
Q ss_pred eeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhh
Q 023512 220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 265 (281)
Q Consensus 220 ~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~ 265 (281)
.++.+++++.++++.|.+++..++||+|++|+++|+||..|++++.
T Consensus 274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~~ 319 (321)
T PRK11543 274 TTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQAG 319 (321)
T ss_pred EEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhcc
Confidence 9999999999999999999999999999889999999999999874
No 36
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.63 E-value=7e-15 Score=109.02 Aligned_cols=111 Identities=32% Similarity=0.379 Sum_probs=95.1
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-C-CeeeEeeeHHHHHHHHHhcCCCC-----------ccccccccccCCC
Q 023512 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPA-----------DSTLVEKVMTPNP 219 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~di~~~~~~~~~~~-----------~~~~v~~~~~~~~ 219 (281)
++.+++++.++.++++.|.+.+..++||++ + |++.|+++..|++. .+...... ...++.+++.+.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILK-YLGGGEKFNKIKTGNGLEAINEPVRSIMTRNV 80 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHH-HhhccchhccccccccchhhhcCHHHHhcCCc
Confidence 467889999999999999988999999998 5 89999999999974 43322111 1346788888889
Q ss_pred eeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512 220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (281)
Q Consensus 220 ~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~ 264 (281)
+++++++++.++++.|.+.+.+++||++++|+++|+||..|++++
T Consensus 81 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~~ 125 (125)
T cd04631 81 ITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLKA 125 (125)
T ss_pred eEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhcC
Confidence 999999999999999999999999999977999999999999864
No 37
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.63 E-value=6.9e-15 Score=108.55 Aligned_cols=112 Identities=31% Similarity=0.386 Sum_probs=95.9
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCC--------CccccccccccCCCeeee
Q 023512 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP--------ADSTLVEKVMTPNPECAT 223 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~--------~~~~~v~~~~~~~~~~v~ 223 (281)
++.++.+++++.++.+.|.+.+++++||++ +|+++|+++..++++........ ....++.+++..++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~ 81 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVLTVT 81 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCCCCeEeC
Confidence 477899999999999999999999999999 69999999999997433322111 124578889988999999
Q ss_pred CCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512 224 IDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (281)
Q Consensus 224 ~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~ 264 (281)
+++++.++++.|.+.+.+++||++++|+++|++|..|++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~~ 122 (122)
T cd04803 82 PDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLRL 122 (122)
T ss_pred CCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhcC
Confidence 99999999999999999999999977999999999999853
No 38
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.63 E-value=1.4e-14 Score=105.27 Aligned_cols=110 Identities=30% Similarity=0.459 Sum_probs=94.8
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHHH
Q 023512 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~ 232 (281)
++.+++++.++.++++.|.+.+.+.+||+++++++|+++..|+++.+..........++.+++.+.+.++.+++++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~ 81 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDNEKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLNEAA 81 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEECCEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHHHHH
Confidence 36778999999999999998889999999977999999999998555443322234578889988899999999999999
Q ss_pred HHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (281)
Q Consensus 233 ~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~ 263 (281)
+.|.+++.+++||++++ +++|+|+..|+++
T Consensus 82 ~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 82 KLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred HHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 99999999999999864 9999999999974
No 39
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.63 E-value=7.9e-15 Score=106.80 Aligned_cols=111 Identities=28% Similarity=0.390 Sum_probs=96.7
Q ss_pred CceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHH
Q 023512 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 230 (281)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 230 (281)
.++.+++++.++.++++.|.+.+.+++||++ +|+++|+++..+++ +++.........++.++|.+.+.++++++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~-~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~ 80 (114)
T cd04604 2 DALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLR-RALEKGLDILTLPVADVMTRNPKTIDPDALAAE 80 (114)
T ss_pred CcccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHH-HHHhccCccccCCHHHhhccCCeEECCCCcHHH
Confidence 4577899999999999999888889999998 78999999999997 454433333334788999888999999999999
Q ss_pred HHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512 231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (281)
Q Consensus 231 ~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~ 263 (281)
+++.|.+++..++||++++|+++|+|+..||++
T Consensus 81 ~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 81 ALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred HHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 999999999999999998899999999999975
No 40
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.63 E-value=1.1e-14 Score=106.09 Aligned_cols=109 Identities=26% Similarity=0.403 Sum_probs=95.0
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHH
Q 023512 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 231 (281)
.+.+++++.++.++++.|.+.+..+++|++ +|+++|+++..|+++.+. ..... ..++.++|...+.++++++++.++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~-~~~~~-~~~v~~~~~~~~~~v~~~~~l~~~ 80 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALL-KGLSL-DDPVSEVMNRNPITAKVGSSREEI 80 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHh-cCCCc-CCCHHHhhcCCCEEEcCCCCHHHH
Confidence 367789999999999999988999999998 789999999999974443 32222 346889998889999999999999
Q ss_pred HHHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (281)
Q Consensus 232 ~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~ 263 (281)
++.|.+++.+++||++++|+++|+||.+|++.
T Consensus 81 ~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 81 LALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred HHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 99999999999999998899999999999874
No 41
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.62 E-value=8.2e-15 Score=110.42 Aligned_cols=111 Identities=23% Similarity=0.395 Sum_probs=94.8
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCC----------------------ccc
Q 023512 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPA----------------------DST 209 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~----------------------~~~ 209 (281)
++.++++++++.++++.|.+.+.+.+||+| +|+++|+++..|+++......... ...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVPL 81 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccccc
Confidence 467799999999999999988999999999 799999999999985443221110 134
Q ss_pred cccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512 210 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (281)
Q Consensus 210 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~ 264 (281)
++.++|.+++..+.+++++.++++.|.+.+.+++||+++ |+++|+||..|++++
T Consensus 82 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~~ 135 (135)
T cd04621 82 VAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICRE 135 (135)
T ss_pred cHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhhC
Confidence 788999888999999999999999999999999999985 999999999999863
No 42
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.62 E-value=9.7e-15 Score=108.60 Aligned_cols=110 Identities=22% Similarity=0.200 Sum_probs=91.1
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCcc-------------ccccccccCC
Q 023512 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADS-------------TLVEKVMTPN 218 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~-------------~~v~~~~~~~ 218 (281)
++.++++++++.++++.|.+++.+++||++ +|+++|+++..|+++ .......... ....+.+..+
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKG-LLLSPDDLLLYRTITFKELSEKFTDSDGVKSRP 80 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhh-hhcCcchhhcccchhhhhhhhhcccccccccCC
Confidence 477899999999999999988999999998 789999999999974 3322211111 0122456677
Q ss_pred CeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512 219 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (281)
Q Consensus 219 ~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~ 263 (281)
+.++++++++.++++.|.+++.+++||+|++|+++|+||..|+++
T Consensus 81 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 81 LITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred CeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 899999999999999999999999999998899999999999975
No 43
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.62 E-value=1.1e-14 Score=105.66 Aligned_cols=108 Identities=23% Similarity=0.318 Sum_probs=94.4
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHH
Q 023512 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 231 (281)
++.++.++.++.++++.|.+.+...+||++ +|+++|+++..++++.+.... ...++.++|..++.++++++++.++
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~---~~~~v~~~~~~~~~~i~~~~~~~~~ 78 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEGG---PDAPVRGVMRRDFPTVSPSATLDAV 78 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhcC---CCCcHHHHhcCCCcEECCCCcHHHH
Confidence 467789999999999999888889999999 689999999999974443222 1347888998899999999999999
Q ss_pred HHHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (281)
Q Consensus 232 ~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~ 263 (281)
++.|.+++..++||++++|+++|++|..|+.+
T Consensus 79 ~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 79 LRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred HHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 99999999999999997799999999999975
No 44
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.62 E-value=1.1e-14 Score=105.29 Aligned_cols=105 Identities=30% Similarity=0.285 Sum_probs=94.5
Q ss_pred CceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHH
Q 023512 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 230 (281)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 230 (281)
.++.++++++++.++.+.|.+.+.+++||++ +|+++|+++..+++. . ....++.++|...+.++++++++.+
T Consensus 2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~-~------~~~~~v~~~~~~~~~~v~~~~~l~~ 74 (108)
T cd04596 2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAG-K------DPDTTIEKVMTKNPITVNPKTSVAS 74 (108)
T ss_pred CccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhc-c------cccccHHHHhcCCCeEECCCCCHHH
Confidence 5688899999999999999988889999999 799999999999962 1 1134788999888999999999999
Q ss_pred HHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512 231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (281)
Q Consensus 231 ~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~ 263 (281)
+++.|.+++...+||++++|+++|++|..|+++
T Consensus 75 ~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 75 VAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred HHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 999999999999999998899999999999985
No 45
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.62 E-value=6.7e-15 Score=104.15 Aligned_cols=94 Identities=16% Similarity=0.259 Sum_probs=84.9
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHH
Q 023512 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 231 (281)
++..+++++++.++++.|.+.+.+.+||++ +|+++|+++..|++. .. .+.++++++++.++
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~-~~-----------------~~~~v~~~~~l~~a 63 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIA-KS-----------------EVVTATKRTTVSEC 63 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhc-CC-----------------CcEEecCCCCHHHH
Confidence 477899999999999999888999999998 799999999999962 10 18889999999999
Q ss_pred HHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (281)
Q Consensus 232 ~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~ 264 (281)
++.|.+++.+++||++++|+++|+||.+|++++
T Consensus 64 ~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~~ 96 (96)
T cd04614 64 AQKMKRNRIEQIPIINGNDKLIGLLRDHDLLKP 96 (96)
T ss_pred HHHHHHhCCCeeeEECCCCcEEEEEEHHHhhcC
Confidence 999999999999999987999999999999864
No 46
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.62 E-value=2e-14 Score=104.04 Aligned_cols=108 Identities=26% Similarity=0.335 Sum_probs=94.4
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHHH
Q 023512 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~ 232 (281)
++.++++++++.++++.|.+.+++++||+++|++.|+++..|+++ ....... ..++.+++..++.++++++++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~~l~~-~~~~~~~--~~~v~~~~~~~~~~v~~~~~~~~~~ 78 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDDGKLVGIVTLSDIAH-AIARGLE--LAKVKDVMTKDVITIDEDEQLYDAI 78 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHH-HHhcccc--ccCHHHHhcCCceEECCCCCHHHHH
Confidence 477899999999999999998999999998889999999999974 4333221 2468888888899999999999999
Q ss_pred HHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (281)
Q Consensus 233 ~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~ 263 (281)
+.|.+.+.+++||++++|+++|+|+..|+++
T Consensus 79 ~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 79 RLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred HHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 9999999999999998799999999999975
No 47
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.62 E-value=1.8e-14 Score=104.29 Aligned_cols=107 Identities=33% Similarity=0.383 Sum_probs=94.4
Q ss_pred CceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHH
Q 023512 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 230 (281)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 230 (281)
+++.+++++.++.++++.|.+++.+++||++ +|++.|+++..+++. ...... .++.++|.+.+.++.+++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~-~~~~~~----~~~~~~~~~~~~~v~~~~~l~~ 76 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISK-AVARDK----KSVEDIMTRNVITATPDEPIDV 76 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHH-HHhhCc----cCHHHhcCCCCeEECCCCcHHH
Confidence 5678899999999999999988999999998 789999999999974 333221 2578888888999999999999
Q ss_pred HHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512 231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (281)
Q Consensus 231 ~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~ 263 (281)
+++.|.+++.+.+||++++|+++|+||..|+++
T Consensus 77 ~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 77 AARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred HHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 999999999999999998899999999999965
No 48
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.61 E-value=7.2e-15 Score=107.07 Aligned_cols=111 Identities=26% Similarity=0.350 Sum_probs=95.4
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcC-CCCccccccccccCCCeeeeCCCCHHH
Q 023512 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN-LPADSTLVEKVMTPNPECATIDTPIVD 230 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~-~~~~~~~v~~~~~~~~~~v~~~~~l~~ 230 (281)
++.+++++.++.++.+.|.+.+.+.+||++ +++++|+++..++++.+.... ......++.++|...+..+++++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 81 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSIVD 81 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCcHHH
Confidence 467799999999999999888888999998 789999999999985554322 112245788999888999999999999
Q ss_pred HHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512 231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (281)
Q Consensus 231 ~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~ 264 (281)
+++.|.+++.+++||+++ |+++|+||..|++++
T Consensus 82 ~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~~ 114 (114)
T cd04629 82 LAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLRA 114 (114)
T ss_pred HHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhcC
Confidence 999999999999999986 999999999999864
No 49
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.61 E-value=1.9e-14 Score=104.58 Aligned_cols=109 Identities=30% Similarity=0.488 Sum_probs=95.2
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHH
Q 023512 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 231 (281)
++.+++++.++.++++.|.+.+..++||++ +|+++|+++..|+++.+.. ..+. ..++.++|..+++++.+++++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~-~~~~-~~~v~~~~~~~~~~v~~~~~~~~~ 79 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAA-GIDL-DTPVSEIMTRDLVTVDPDEPVAEA 79 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhc-cCCC-ccCHHHhccCCCEEECCCCcHHHH
Confidence 467899999999999999988999999999 7999999999999744433 3222 346888888889999999999999
Q ss_pred HHHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (281)
Q Consensus 232 ~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~ 263 (281)
++.|.+++...+||++++|+++|++|..|+++
T Consensus 80 ~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 80 AKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred HHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 99999999999999998899999999999975
No 50
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.61 E-value=2e-14 Score=104.25 Aligned_cols=109 Identities=35% Similarity=0.490 Sum_probs=95.3
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHHH
Q 023512 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~ 232 (281)
++.+++++.++.++.+.|.+.+.+.+||+++++++|+++..|+++.+...... ...++.+++...++++++++++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~~~~-~~~~i~~~~~~~~~~v~~~~~l~~~~ 80 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDDGRLVGIVTDRDLRNRVVAEGLD-PDTPVSEVMTAPPITIPPDATVFEAL 80 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHhccCCC-ccCCHHHHhCCCCeEECCCCcHHHHH
Confidence 46789999999999999988888999999989999999999997544443222 23478889988999999999999999
Q ss_pred HHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (281)
Q Consensus 233 ~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~ 263 (281)
+.|.+++.+++||+++ |+++|++|..|+++
T Consensus 81 ~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 81 LLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred HHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 9999999999999986 99999999999985
No 51
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.61 E-value=2.2e-14 Score=103.85 Aligned_cols=108 Identities=23% Similarity=0.381 Sum_probs=95.5
Q ss_pred CceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHH
Q 023512 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (281)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 231 (281)
.++.+++.+.++.++.+.|.+.+..++||+++|+++|+++..|++ ....... ...++.++|.+.+.++++++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~dl~-~~~~~~~--~~~~~~~~~~~~~~~v~~~~~l~~~ 78 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEGGRVVGIISRRDVE-KALRHGL--GHAPVKDYMSTDVVTVPPDTPLSEV 78 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeCCEEEEEEEHHHHH-HHHhccc--ccCcHHHHhcCCCEEECCCCcHHHH
Confidence 467889999999999999998888999999889999999999997 4443322 3457889999999999999999999
Q ss_pred HHHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (281)
Q Consensus 232 ~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~ 263 (281)
++.|.+++.+++||++ +|+++|+||..|+++
T Consensus 79 ~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 79 QELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred HHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 9999999999999998 899999999999975
No 52
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.61 E-value=1.8e-14 Score=106.11 Aligned_cols=112 Identities=26% Similarity=0.375 Sum_probs=95.3
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCC---------CccccccccccCCCeeee
Q 023512 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLP---------ADSTLVEKVMTPNPECAT 223 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~---------~~~~~v~~~~~~~~~~v~ 223 (281)
++.+++++.++.++++.|.+.+...+||+++|+++|+++..|+++........ ....++.++|.+++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDRGKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPITVS 81 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecCCeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccCCCeEeC
Confidence 46779999999999999999889999999989999999999997433221110 112467788888999999
Q ss_pred CCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512 224 IDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (281)
Q Consensus 224 ~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~ 264 (281)
+++++.++++.|.+.+.+++||++++|+++|+||..|++++
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~~ 122 (122)
T cd04585 82 PDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFRA 122 (122)
T ss_pred CCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhhC
Confidence 99999999999999999999999987999999999999863
No 53
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.61 E-value=4.5e-15 Score=122.91 Aligned_cols=119 Identities=24% Similarity=0.248 Sum_probs=109.6
Q ss_pred CCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCe
Q 023512 142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE 220 (281)
Q Consensus 142 ~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~ 220 (281)
..+.++|+|..+...+.+++++.+-.++..+.+++++||+| ..+++|+||.+|+. .. ..+.++..+|+++|.
T Consensus 188 ~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~------~~-~~~t~ieKVMtknp~ 260 (432)
T COG4109 188 ITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVL------DK-KPSTTIEKVMTKNPI 260 (432)
T ss_pred eeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhh------cC-CCCccHHHHhccCCe
Confidence 45799999999999999999999999999999999999999 89999999999996 22 235589999999999
Q ss_pred eeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512 221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA 267 (281)
Q Consensus 221 ~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~ 267 (281)
++.+.+++..+.+.|...++.-+||++++.+++|+||+.|++++...
T Consensus 261 tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~ 307 (432)
T COG4109 261 TVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQM 307 (432)
T ss_pred eecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988543
No 54
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.61 E-value=8.1e-15 Score=110.38 Aligned_cols=112 Identities=28% Similarity=0.395 Sum_probs=95.7
Q ss_pred CceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCC---------------------CCccc
Q 023512 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL---------------------PADST 209 (281)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~---------------------~~~~~ 209 (281)
.++.+++++.++.++++.|.+.++.++||++ +++++|+++..|+++....... .....
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGR 81 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCC
Confidence 5688899999999999999999999999999 7899999999999743322110 11234
Q ss_pred cccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512 210 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (281)
Q Consensus 210 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~ 264 (281)
++.++|..++..+++++++.++++.|.+.+.+++||+| +|+++|+||..|++++
T Consensus 82 ~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~~ 135 (135)
T cd04586 82 KVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLRA 135 (135)
T ss_pred CHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhcC
Confidence 68888888899999999999999999999999999999 8999999999999864
No 55
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.60 E-value=1.4e-14 Score=105.68 Aligned_cols=108 Identities=20% Similarity=0.247 Sum_probs=91.0
Q ss_pred ceeEeCCCCcHHHHHHHHHHcC-ccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccC--CCeeeeCCCCH
Q 023512 153 KVVTISPTDTVLMATKKMLELR-LSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDTPI 228 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~-~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l 228 (281)
++.+++++.++.++++.|.+++ .+.+||++ +|+++|+++..|++...... . ...++.++|.. .++++.+++++
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~-~--~~~~v~~~~~~~~~~~~v~~~~~l 78 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQ-W--AQTTVIQVMTPAAKLVTVLSEESL 78 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHhh-c--cccchhhhhcccccceEECCCCcH
Confidence 4778999999999999997664 88999998 78999999999997443321 1 13468888864 36789999999
Q ss_pred HHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512 229 VDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (281)
Q Consensus 229 ~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~ 263 (281)
.++++.|.+++.+++||++++|+++|++|..|+++
T Consensus 79 ~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 79 AEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred HHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 99999999999999999997799999999999875
No 56
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.60 E-value=1.3e-14 Score=107.90 Aligned_cols=111 Identities=19% Similarity=0.290 Sum_probs=90.6
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHH-----HHhcCCCCccccccccccCCCeee----
Q 023512 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMR-----VISQNLPADSTLVEKVMTPNPECA---- 222 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~-----~~~~~~~~~~~~v~~~~~~~~~~v---- 222 (281)
++.+++++.++.++++.|.+.+.+.+||++ +|+++|+++..|+... ...........++.++|.+.+..+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~ 81 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKALDL 81 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccccH
Confidence 367899999999999999988999999999 7899999999999742 222111222456889997655433
Q ss_pred --eCCCCHHHHHHHhHhCCCCeeeEecCC-CcEEEEEEhhhHHH
Q 023512 223 --TIDTPIVDALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITH 263 (281)
Q Consensus 223 --~~~~~l~~~~~~~~~~~~~~l~Vv~~~-~~~~Gvis~~di~~ 263 (281)
.+++++.++++.|.+++.+++||+|++ |+++|+||..|+++
T Consensus 82 ~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 82 EELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred HHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 368899999999999999999999986 79999999999986
No 57
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.60 E-value=2.2e-14 Score=103.08 Aligned_cols=103 Identities=22% Similarity=0.268 Sum_probs=91.4
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHH
Q 023512 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 231 (281)
++.+++++.++.++++.|.+.+.++++|++ +|+++|+++..|+++ ... .++.++|.+.+..+.+++++.++
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 73 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAAR-ASG-------GCCGDHAEPFKVTVSVDDDLRIV 73 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHH-hcc-------cchhhhcccCCEEECCCCCHHHH
Confidence 467899999999999999888899999998 899999999999973 211 24678888888889999999999
Q ss_pred HHHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (281)
Q Consensus 232 ~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~ 263 (281)
++.|.+++...+||+|++|+++|+|+..|+++
T Consensus 74 ~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 74 LSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred HHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 99999999999999998899999999999975
No 58
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.60 E-value=3.1e-14 Score=103.30 Aligned_cols=110 Identities=21% Similarity=0.226 Sum_probs=94.2
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHHH
Q 023512 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~ 232 (281)
+++.++++.++.++++.|.+.+...++|+++|++.|+++..|+++.... .......++.++|.+++..+++++++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~~~-~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 80 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDGDPRLGIVTRTDLLDAVLL-DGLPSSTPVGEIATFPLITVDPDDFLFNAL 80 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecCCeEEEEEEHHHHHHHHHc-CCCCCCCCHHHHhCCCcEEECCCCcHHHHH
Confidence 3667899999999999999888899999987889999999999744332 222234578899988899999999999999
Q ss_pred HHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (281)
Q Consensus 233 ~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~ 264 (281)
+.|.+++...+||++ +|+++|+||..|++++
T Consensus 81 ~~~~~~~~~~~~Vv~-~~~~~G~it~~dl~~~ 111 (111)
T cd04589 81 LLMTRHRIHRVVVRE-GGEVVGVLEQTDLLSF 111 (111)
T ss_pred HHHHHhCccEEEEee-CCEEEEEEEhHHhhcC
Confidence 999999999999998 5899999999999863
No 59
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.59 E-value=1.9e-14 Score=107.94 Aligned_cols=110 Identities=26% Similarity=0.351 Sum_probs=93.9
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCcc--------------------ccc
Q 023512 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADS--------------------TLV 211 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~--------------------~~v 211 (281)
++.++.+++++.++++.|.+.+++++||++ +|+++|+++..|+++.+. ....... .++
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIY-KGKGLFYVTLLYSVIFLDESKIKKLLGKKV 80 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHh-ccCCcccccccccccccchHHHHHHcCCCH
Confidence 467899999999999999988899999999 789999999999974333 2221111 267
Q ss_pred cccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (281)
Q Consensus 212 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~ 264 (281)
.++|.+++..+.+++++.++++.|.+.+.+.+||+++ |+++|++|..|++++
T Consensus 81 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~~ 132 (132)
T cd04636 81 EEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIRS 132 (132)
T ss_pred HHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhcC
Confidence 7888888999999999999999999999999999997 999999999999863
No 60
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.59 E-value=2.1e-14 Score=105.85 Aligned_cols=111 Identities=32% Similarity=0.346 Sum_probs=94.6
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCC---------CCccccccccccCCCeeee
Q 023512 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL---------PADSTLVEKVMTPNPECAT 223 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~---------~~~~~~v~~~~~~~~~~v~ 223 (281)
++.++++++++.++++.|.+.+.+++||+++|+++|+++..++++.+..... .....++.++|..++.+++
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEGGKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVITIE 81 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEECCEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCCceEEC
Confidence 4678999999999999999889999999999999999999999744332111 1123467788888899999
Q ss_pred CCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512 224 IDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (281)
Q Consensus 224 ~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~ 264 (281)
+++++.++++.|.+.+.+.+||+++ |+++|+||..|++++
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~~ 121 (121)
T cd04633 82 PDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILRY 121 (121)
T ss_pred CCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhcC
Confidence 9999999999999999999999996 999999999999863
No 61
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.59 E-value=3.8e-14 Score=102.75 Aligned_cols=107 Identities=21% Similarity=0.234 Sum_probs=91.8
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-C-CeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHH
Q 023512 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 230 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 230 (281)
++.+++++.++.++.+.|.+.+.+++||++ + |+++|+++..|+++ ....... ..++.+++ .++.++.+++++.+
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~-~~~~~~~--~~~~~~~~-~~~~~v~~~~~l~~ 77 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLR-ALAEGEE--DLDLRDLL-RPPLFVPESTPLDD 77 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHH-HHHcCCC--cCCHHHHh-cCCeecCCCCcHHH
Confidence 477899999999999999988899999998 6 89999999999974 4433221 13566666 56889999999999
Q ss_pred HHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512 231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (281)
Q Consensus 231 ~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~ 263 (281)
+++.|.+++.+++||++++|+++|+||..|+++
T Consensus 78 ~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 78 LLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred HHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 999999999999999998899999999999975
No 62
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.59 E-value=1.8e-14 Score=106.32 Aligned_cols=112 Identities=29% Similarity=0.338 Sum_probs=95.0
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcC---CC-----CccccccccccCCCeeee
Q 023512 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN---LP-----ADSTLVEKVMTPNPECAT 223 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~---~~-----~~~~~v~~~~~~~~~~v~ 223 (281)
++.+++++.++.++++.|.+.+.+++||++ +|+++|+++..|+++...... .. ....++.+++.+.+..++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYSVT 81 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCeeEC
Confidence 477899999999999999988899999999 799999999999974321110 00 123467788888899999
Q ss_pred CCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512 224 IDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (281)
Q Consensus 224 ~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~ 264 (281)
+++++.++++.|.+.+.+++||++++|+++|++|..|++++
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~~ 122 (122)
T cd04635 82 PDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLKA 122 (122)
T ss_pred CCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhcC
Confidence 99999999999999999999999988999999999999864
No 63
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.59 E-value=1.7e-14 Score=121.98 Aligned_cols=126 Identities=18% Similarity=0.245 Sum_probs=107.7
Q ss_pred hcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-C-CeeeEeeeHHHHHHHHHhcCCCCcccccccccc
Q 023512 139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMT 216 (281)
Q Consensus 139 ~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~ 216 (281)
+...++.++|+|..++.+++++.++.++++.+.+++++++||++ + +.++|+++.+|++. ....... ...+.++|.
T Consensus 64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~-~~~~~~~--~~~l~~l~r 140 (292)
T PRK15094 64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLP-FMRSDAE--AFSMDKVLR 140 (292)
T ss_pred cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHh-HhhccCC--cCCHHHHcC
Confidence 46678999999766899999999999999999999999999998 4 78999999999974 3322111 234778885
Q ss_pred CCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhch
Q 023512 217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT 268 (281)
Q Consensus 217 ~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~ 268 (281)
+ +.+++++.++.++++.|.+++.+.+||+|+.|.++|+||..||+......
T Consensus 141 ~-~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGe 191 (292)
T PRK15094 141 Q-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGE 191 (292)
T ss_pred C-CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCC
Confidence 4 56899999999999999999999999999999999999999999986653
No 64
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.59 E-value=4.3e-14 Score=102.04 Aligned_cols=106 Identities=25% Similarity=0.332 Sum_probs=93.7
Q ss_pred CceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHH
Q 023512 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 230 (281)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 230 (281)
.++..++++.++.++++.|.+.+..++||++ +|+++|+++..|++. .... ..++.++|...+.++++++++.+
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~-~~~~-----~~~v~~~~~~~~~~v~~~~~~~~ 75 (109)
T cd04583 2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQ-AYKE-----AKSLEDIMLEDVFTVQPDASLRD 75 (109)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHH-Hhhc-----CCcHhHhhcCCceEECCCCcHHH
Confidence 4577899999999999999988999999999 789999999999963 3221 23678888888999999999999
Q ss_pred HHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512 231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (281)
Q Consensus 231 ~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~ 263 (281)
+++.|.+.+..++||++++|+++|++|.+|+++
T Consensus 76 ~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 76 VLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred HHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 999999999999999998899999999999975
No 65
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.58 E-value=3.2e-14 Score=103.18 Aligned_cols=108 Identities=25% Similarity=0.293 Sum_probs=93.6
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHH
Q 023512 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 231 (281)
++.+++++.++.++++.|.+.+.+++||++ +|++.|+++..|++ .+...... ...++.++|.+++.++.+++++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~-~~~~~~~~-~~~~v~~~~~~~~~~v~~~~~l~~~ 79 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDIL-DLDLFESF-LEKKVFNIVSQDVFYVNEEDTIDEA 79 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhH-HHHhhccc-ccCcHHHHhcCCcEEEcCCCcHHHH
Confidence 467899999999999999988999999998 79999999999997 44332211 1346888898889999999999999
Q ss_pred HHHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (281)
Q Consensus 232 ~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~ 263 (281)
++.|.+++..++||+++ |+++|+||..|++.
T Consensus 80 ~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 80 LDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred HHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 99999999999999996 99999999999874
No 66
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.58 E-value=3.4e-14 Score=105.89 Aligned_cols=112 Identities=24% Similarity=0.223 Sum_probs=93.5
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcC------------CCCccccccccccCCC
Q 023512 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN------------LPADSTLVEKVMTPNP 219 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~------------~~~~~~~v~~~~~~~~ 219 (281)
++.+++++.++.++++.|.+.+.+.+||++ +|++.|++|..|++..+.... ......++.++|..++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSSPV 81 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcCCC
Confidence 467789999999999999999999999999 789999999999974332210 0011346788898889
Q ss_pred eeeeCCCCHHHHHHHhHhCCCCeeeEec--CCCcEEEEEEhhhHHHh
Q 023512 220 ECATIDTPIVDALHIMHDGKFLHLPVVD--RDGDVVDVVDVIHITHA 264 (281)
Q Consensus 220 ~~v~~~~~l~~~~~~~~~~~~~~l~Vv~--~~~~~~Gvis~~di~~~ 264 (281)
++++++.++.++++.|.+.+...+||++ ++|+++|+||..|++++
T Consensus 82 ~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~~ 128 (128)
T cd04632 82 ITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLRA 128 (128)
T ss_pred ceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhcC
Confidence 9999999999999999999999999984 46999999999999863
No 67
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.58 E-value=5.5e-14 Score=101.80 Aligned_cols=109 Identities=31% Similarity=0.339 Sum_probs=94.0
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHHH
Q 023512 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~ 232 (281)
++.++.++.++.++++.|.+.+...+||+++++++|+++..|+++ ....... ...++.++|.+++..+.+++++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~-~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~ 79 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDDGRLVGIVTLADIRR-VPAEGRE-ATVLVGDVMTRDPVTASPDETLRDAL 79 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeCCeEEEEEEHHHHHH-HHhcCcc-cccCHHHhccCCCeEECCCCCHHHHH
Confidence 477899999999999999988889999998899999999999974 3332221 12356788888999999999999999
Q ss_pred HHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (281)
Q Consensus 233 ~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~ 263 (281)
+.|.+++.+++||++++|+++|+||..|+++
T Consensus 80 ~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 80 KRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred HHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 9999999999999997799999999999975
No 68
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.58 E-value=4.6e-14 Score=102.00 Aligned_cols=109 Identities=25% Similarity=0.298 Sum_probs=91.3
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHHH
Q 023512 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~ 232 (281)
++.+++++.++.++.+.|.+.+.+++||+++|+++|+++..|+++.+... ......++.+++.+.+.++++++++.++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~l~~~~ 80 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDDGRVVGSIDESDLLDALIEG-KAKFSLPVREVMGEPLPTVDPDAPIEELS 80 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeCCeeEEEEeHHHHHHHHhcc-ccccCcCHHHHhcCCCceeCCCCcHHHHH
Confidence 46789999999999999999999999999989999999999997443332 22223468888888899999999999999
Q ss_pred HHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (281)
Q Consensus 233 ~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~ 264 (281)
+.|.+ . ..+||++++|+++|++|.+|++++
T Consensus 81 ~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~~ 110 (110)
T cd04609 81 ELLDR-G-NVAVVVDEGGKFVGIITRADLLKY 110 (110)
T ss_pred HHHHh-C-CceeEEecCCeEEEEEeHHHhhcC
Confidence 99988 3 347888888999999999999864
No 69
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.57 E-value=5.1e-14 Score=100.00 Aligned_cols=91 Identities=20% Similarity=0.278 Sum_probs=82.5
Q ss_pred CCeEecCCchHHHHHHHhHhCCCcEeeEee-C-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCC
Q 023512 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (281)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d-~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (281)
+++++++++++.+|.++|.+++++.+||++ + ++++|+++..|+...
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~-------------------------------- 49 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILI-------------------------------- 49 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhh--------------------------------
Confidence 578899999999999999999999999998 3 799999999998642
Q ss_pred hhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-C-CeeeEeeeHHHHH
Q 023512 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDIL 196 (281)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~di~ 196 (281)
-.+.++.+++++.++++.|.+++.+++||++ + |+++|++|.+|++
T Consensus 50 ------------------------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~ 96 (98)
T cd04618 50 ------------------------LRLVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRIL 96 (98)
T ss_pred ------------------------eeeEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhh
Confidence 1167899999999999999999999999999 5 8999999999996
No 70
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.57 E-value=6.1e-14 Score=126.93 Aligned_cols=174 Identities=19% Similarity=0.223 Sum_probs=131.0
Q ss_pred cccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhh
Q 023512 42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120 (281)
Q Consensus 42 ~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (281)
.++++|.++++++++++++.+++++|.+++++.+||+++ ++++|+++..|+....
T Consensus 88 ~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~------------------------ 143 (486)
T PRK05567 88 RSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFET------------------------ 143 (486)
T ss_pred hhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcc------------------------
Confidence 467889999999999999999999999999999999985 9999999999985310
Q ss_pred hCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHH
Q 023512 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV 199 (281)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~ 199 (281)
....++.++|.. .++.++++++++.++++.|.+++.+.+||++ +|+++|+||.+|+++..
T Consensus 144 ------------------~~~~~V~dim~~-~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~ 204 (486)
T PRK05567 144 ------------------DLSQPVSEVMTK-ERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAE 204 (486)
T ss_pred ------------------cCCCcHHHHcCC-CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhh
Confidence 011235556642 5689999999999999999999999999999 89999999999998554
Q ss_pred HhcCC--C-CccccccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhh
Q 023512 200 ISQNL--P-ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 265 (281)
Q Consensus 200 ~~~~~--~-~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~ 265 (281)
..... + .....+...|.. ++ .-.+..+.|.+.+.+.+.|-..+|+..|+++..+.++..
T Consensus 205 ~~p~a~~d~~g~l~V~aai~~-----~~--~~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~ 266 (486)
T PRK05567 205 EFPNACKDEQGRLRVGAAVGV-----GA--DNEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAK 266 (486)
T ss_pred hCCCcccccCCCEEEEeeccc-----Cc--chHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhh
Confidence 32211 0 011223333332 23 227888888889998664433468888888777776654
No 71
>PRK11573 hypothetical protein; Provisional
Probab=99.57 E-value=8.6e-14 Score=123.18 Aligned_cols=167 Identities=13% Similarity=0.153 Sum_probs=128.5
Q ss_pred HHHHhcCCCCcccccccccC--CCeEecCCchHHHHHHHhHhCCCcEeeEeeC--CeEEEEEehHHHHHHHHHHHHHHHH
Q 023512 30 RVIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAE 105 (281)
Q Consensus 30 ~~~~~~~~~~~~~v~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~--~~~vGvi~~~dll~~~~~~~~~~~~ 105 (281)
.++.+...+.+.+++++|++ ++.+++.++++.++++.+.+++++++||+++ ++++|++..+|++......
T Consensus 176 ~mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~------ 249 (413)
T PRK11573 176 DMLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEK------ 249 (413)
T ss_pred HHHHHHhccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhcc------
Confidence 34456678999999999986 7899999999999999999999999999975 8999999999998532110
Q ss_pred hhhhHHHHHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CC
Q 023512 106 KGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-EN 184 (281)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~ 184 (281)
... . .. .+.+++ +++.+++++.++.++++.|++++.+.++|+| .|
T Consensus 250 --~~~-------------------~-~~---------~l~~~~---r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG 295 (413)
T PRK11573 250 --KEF-------------------T-KE---------NMLRAA---DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYG 295 (413)
T ss_pred --CcC-------------------C-HH---------HHHhhc---cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCC
Confidence 000 0 00 011222 5688999999999999999999999999999 88
Q ss_pred eeeEeeeHHHHHHHHHhcCCCCcccc-ccccc--cCCCeeeeCCCCHHHHHHHhH
Q 023512 185 KPRGILTSKDILMRVISQNLPADSTL-VEKVM--TPNPECATIDTPIVDALHIMH 236 (281)
Q Consensus 185 ~~~Givt~~di~~~~~~~~~~~~~~~-v~~~~--~~~~~~v~~~~~l~~~~~~~~ 236 (281)
...|+||..|++..++++-.+..+.. -..+. ..+.+.++...++.++.+.+-
T Consensus 296 ~~~GiVTleDilEeivGei~de~d~~~~~~i~~~~~~~~~v~G~~~l~d~~~~l~ 350 (413)
T PRK11573 296 DIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQNDGSVIIDGTANVREINKAFN 350 (413)
T ss_pred CeEEEeeHHHHHHHHhCCCCcccCcccccceEEecCCEEEEEeeeEHHHHHHHhC
Confidence 99999999999988887754432211 11122 245678899999999988873
No 72
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.57 E-value=8.5e-14 Score=102.73 Aligned_cols=112 Identities=20% Similarity=0.337 Sum_probs=95.2
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcC--CC-------CccccccccccCCCeeee
Q 023512 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQN--LP-------ADSTLVEKVMTPNPECAT 223 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~--~~-------~~~~~v~~~~~~~~~~v~ 223 (281)
++.+++++.++.++++.|.+.+++++||+++|+++|+++..++++.+.... .. ....++.++|...++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVEDNELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPITVS 81 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeCCeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcCCCeeeC
Confidence 467899999999999999988999999999899999999999975432110 00 012367888888999999
Q ss_pred CCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512 224 IDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (281)
Q Consensus 224 ~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~ 264 (281)
+++++.++++.|.+++...+||++++|+++|+++..|++++
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~~ 122 (122)
T cd04637 82 PDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLKY 122 (122)
T ss_pred CCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhhC
Confidence 99999999999999999999999988999999999999864
No 73
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.57 E-value=2.6e-14 Score=128.65 Aligned_cols=119 Identities=28% Similarity=0.276 Sum_probs=103.5
Q ss_pred eeEeCCCCcHHHHHHHHHHcCccEEEEEeC----CeeeEeeeHHHHHHHHHhcCCCCccccccccccC--CCeeeeCCCC
Q 023512 154 VVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDTP 227 (281)
Q Consensus 154 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~----~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~ 227 (281)
++++++++|+.++++.|.+++++.+||+++ ++++|+||..|+. .. . ...+.+++++|++ ++++++++++
T Consensus 107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr-~~-~---~~~~~~V~dIMt~~~~~itv~~d~~ 181 (502)
T PRK07107 107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYR-IS-R---MSLDTKVKDFMTPFEKLVTANEGTT 181 (502)
T ss_pred CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhh-cc-c---cCCCCCHHHHhCCCCCeEEECCCCc
Confidence 468999999999999999999999999994 7999999999994 22 1 1234589999986 7789999999
Q ss_pred HHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhchHHHHHHHHH
Q 023512 228 IVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATEILLDQIMR 277 (281)
Q Consensus 228 l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~~~~~~~~~~ 277 (281)
+.+|++.|.++++..+||+|++|+++|+||.+|+++...++....+++.+
T Consensus 182 l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~~~P~a~~d~~gr 231 (502)
T PRK07107 182 LKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHKENPLELLDSSKR 231 (502)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcccChhhhhhhccC
Confidence 99999999999999999999889999999999999998777766665543
No 74
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.56 E-value=3.5e-14 Score=125.68 Aligned_cols=123 Identities=16% Similarity=0.171 Sum_probs=107.7
Q ss_pred hcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe--CCeeeEeeeHHHHHHHHHhcCCCCcccccccccc
Q 023512 139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT 216 (281)
Q Consensus 139 ~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~ 216 (281)
+...++.++|+|..++.+++.++++.++++.+.+++++++||.+ .+.++|+++.+|++. .... ...++.+++.
T Consensus 188 l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~-~~~~----~~~~l~~~~~ 262 (408)
T TIGR03520 188 FGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLP-HLNK----KNFDWQSLLR 262 (408)
T ss_pred cCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHh-Hhcc----CCCCHHHHcC
Confidence 45678999999888999999999999999999999999999998 368999999999983 3322 1235677774
Q ss_pred CCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512 217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA 267 (281)
Q Consensus 217 ~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~ 267 (281)
++.+++++.++.++++.|.+++.+.++|+||.|..+|+||.+||+.....
T Consensus 263 -~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivg 312 (408)
T TIGR03520 263 -EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVG 312 (408)
T ss_pred -CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhC
Confidence 68899999999999999999999999999999999999999999998643
No 75
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.56 E-value=1.1e-13 Score=99.54 Aligned_cols=105 Identities=27% Similarity=0.377 Sum_probs=93.2
Q ss_pred CceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHH
Q 023512 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (281)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 231 (281)
+++.+++.+.++.++++.|.+.+...+||+++++++|+++..|++. . ....++.++|...+..+.+++++.++
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~g~v~~~~l~~-~------~~~~~~~~~~~~~~~~v~~~~~l~~~ 74 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDNGKVVGIVSARDLLG-K------DPDETVEEIMSKDLVVAVPEMDIMDA 74 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhhc-c------CccccHHHhCCCCCeEECCCCCHHHH
Confidence 4578899999999999999888888899998899999999999963 1 11346888998889999999999999
Q ss_pred HHHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (281)
Q Consensus 232 ~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~ 263 (281)
++.|.+++..++||++++|+++|+++..|+++
T Consensus 75 ~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 75 ARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred HHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 99999999999999998899999999999985
No 76
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.56 E-value=4e-14 Score=131.22 Aligned_cols=127 Identities=21% Similarity=0.233 Sum_probs=108.7
Q ss_pred hhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCcccccccccc
Q 023512 138 RMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT 216 (281)
Q Consensus 138 ~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~ 216 (281)
.+...+++++|. +++.++++++++.++.+.|.+++.+.+||+| +++++|+++.+|+.+.+.... .....++.++|+
T Consensus 443 ~L~~~~V~dim~--~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~-~~~~~~v~dim~ 519 (574)
T PRK01862 443 RLRTTQMRELIQ--PAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKR-DTTDKTAADYAH 519 (574)
T ss_pred HHhhCcHHHHhc--CCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhccc-ccccchHHHhcc
Confidence 345567889997 6788899999999999999999999999999 789999999999975443332 222347889999
Q ss_pred CCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCC--CcEEEEEEhhhHHHhhhc
Q 023512 217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRD--GDVVDVVDVIHITHAAVA 267 (281)
Q Consensus 217 ~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~--~~~~Gvis~~di~~~~~~ 267 (281)
+++.++++++++.++++.|.+++.+.+||+|++ ++++|+||++|++++..+
T Consensus 520 ~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~ 572 (574)
T PRK01862 520 TPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR 572 (574)
T ss_pred CCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence 999999999999999999999999999999876 489999999999998654
No 77
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.56 E-value=7.5e-14 Score=100.92 Aligned_cols=106 Identities=32% Similarity=0.453 Sum_probs=91.9
Q ss_pred CceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeC-CCCHH
Q 023512 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATI-DTPIV 229 (281)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~-~~~l~ 229 (281)
+++.+++++.++.++.+.|.+.+...+||++ +|++.|+++..+++. .. ....++.++|...+..+.+ ++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~-~~-----~~~~~v~~~~~~~~~~~~~~~~~l~ 75 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRF-ET-----DLDKPVSEVMTPENLLTTVEGTSLE 75 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeee-cc-----cCCCCHHHhcccCceEEecCCCCHH
Confidence 4578899999999999999988999999998 789999999999852 21 1234788888777777777 99999
Q ss_pred HHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512 230 DALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (281)
Q Consensus 230 ~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~ 263 (281)
++++.|.+.+.+.+||++++|+++|+||.+|+++
T Consensus 76 ~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 76 EALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred HHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 9999999999999999998899999999999975
No 78
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.56 E-value=1.1e-13 Score=99.30 Aligned_cols=103 Identities=26% Similarity=0.358 Sum_probs=91.4
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHHH
Q 023512 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~ 232 (281)
++.++++++++.++++.|.+.+.+.+||+++++++|+++..++++ .. ...++.++|...+.++++++++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~Giv~~~~l~~-~~------~~~~~~~~~~~~~~~v~~~~~l~~~~ 74 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVEDGKLVGIITSRDVRR-AH------PNRLVADAMTREVVTISPEASLLEAK 74 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEehHHhhc-cc------ccCCHHHHccCCCEEECCCCCHHHHH
Confidence 467789999999999999888889999999899999999999963 21 12368888988999999999999999
Q ss_pred HHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (281)
Q Consensus 233 ~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~ 263 (281)
+.|.+++..++||+++ |+++|++|..|++.
T Consensus 75 ~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~~ 104 (105)
T cd04599 75 RLMEEKKIERLPVLRE-RKLVGIITKGTIAL 104 (105)
T ss_pred HHHHHcCCCEeeEEEC-CEEEEEEEHHHhcc
Confidence 9999999999999996 99999999999873
No 79
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.55 E-value=1.5e-13 Score=122.77 Aligned_cols=174 Identities=14% Similarity=0.206 Sum_probs=137.2
Q ss_pred EEEEehHHHHHHHHHhcCCCCcccccccccC--CCeEecCCchHHHHHHHhHhCCCcEeeEeeC--CeEEEEEehHHHHH
Q 023512 19 CGILTDKDIATRVIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLY 94 (281)
Q Consensus 19 ~Gi~t~~d~~~~~~~~~~~~~~~~v~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~--~~~vGvi~~~dll~ 94 (281)
.|.+...+ +.++.+...+.+.+++++|++ ++.+++.+.++.++.+.+.+++++++||+++ +.++|++..+|++.
T Consensus 186 ~g~~~~~E--~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~ 263 (429)
T COG1253 186 EGVLEEEE--REMINNVLDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLR 263 (429)
T ss_pred cCCcCHHH--HHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHH
Confidence 57777777 477888889999999999986 6788899999999999999999999999994 89999999999987
Q ss_pred HHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcC
Q 023512 95 DAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELR 174 (281)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~ 174 (281)
+....-. .......+ .++..++++.++.++++.|++.+
T Consensus 264 ~~~~~~~---------------------------------------~~~~~~~~---~~~~~Vpet~~~~~lL~~~r~~~ 301 (429)
T COG1253 264 ALLDGQS---------------------------------------DLDLRVLV---RPPLFVPETLSLSDLLEEFREER 301 (429)
T ss_pred HHhcCcc---------------------------------------ccchhhcc---cCCeEecCCCcHHHHHHHHHHhC
Confidence 6322100 00000011 47999999999999999999999
Q ss_pred ccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccc----cccccccCCCeeeeCCCCHHHHHHHhHh
Q 023512 175 LSSAVVTV-ENKPRGILTSKDILMRVISQNLPADST----LVEKVMTPNPECATIDTPIVDALHIMHD 237 (281)
Q Consensus 175 ~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~----~v~~~~~~~~~~v~~~~~l~~~~~~~~~ 237 (281)
.+..+|+| .|...|+||..|++..+++.-.+..+. .+....... +.++...++.+..+.+--
T Consensus 302 ~hmAiVvDEyG~~~GlVTleDIiEeIvGei~de~d~~~~~~~~~~~~~~-~~v~G~~~l~e~~~~l~~ 368 (429)
T COG1253 302 THMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDEHDEDEEEDIIQRDDDG-WLVDGRVPLEELEELLGI 368 (429)
T ss_pred CeEEEEEEcCCCeEEEeEHHHHHHHHhCCCcCcccccccccceEecCCc-EEEeccccHHHHHHHhCC
Confidence 99999999 899999999999998888765543321 222222334 778899999888887754
No 80
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.55 E-value=5.9e-14 Score=121.42 Aligned_cols=120 Identities=15% Similarity=0.151 Sum_probs=100.8
Q ss_pred CcccccccccC--CCeEecCCchHHHHHHHhHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHh
Q 023512 39 EETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE 115 (281)
Q Consensus 39 ~~~~v~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d-~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~ 115 (281)
...+++++|.+ +++++++++|+.+|++.|.+++...+||++ +|+++|+++..|+.+....
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~----------------- 262 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDM----------------- 262 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhc-----------------
Confidence 56689999997 899999999999999999999888888887 5899999999998542100
Q ss_pred hHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHH
Q 023512 116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDI 195 (281)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di 195 (281)
+ ......++.++|. +++.++.+++++.++++.|.+++.+++||+++|+++|+||.+|+
T Consensus 263 ------~--------------~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~lvGiit~~di 320 (326)
T PRK10892 263 ------G--------------IDLRQASIADVMT--PGGIRVRPGILAVDALNLMQSRHITSVLVADGDHLLGVLHMHDL 320 (326)
T ss_pred ------C--------------CCcccCCHHHhcC--CCCEEECCCCCHHHHHHHHHHCCCcEEEEeeCCEEEEEEEhHHh
Confidence 0 0011235778887 67899999999999999999999999999999999999999999
Q ss_pred HH
Q 023512 196 LM 197 (281)
Q Consensus 196 ~~ 197 (281)
++
T Consensus 321 l~ 322 (326)
T PRK10892 321 LR 322 (326)
T ss_pred Hh
Confidence 73
No 81
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.54 E-value=1.1e-13 Score=100.90 Aligned_cols=106 Identities=27% Similarity=0.343 Sum_probs=91.4
Q ss_pred CceeEeCCCCcHHHHHHHHHHcCccEEEEEeC----CeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeC--C
Q 023512 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATI--D 225 (281)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~----~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~--~ 225 (281)
.++.++.+++++.++++.|.+.+..++||+++ |+++|+++..|++ ... .. ..++.++|...+..+.. +
T Consensus 2 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~-~~~-~~----~~~v~~~~~~~~~~~~~~~~ 75 (114)
T cd04602 2 TDPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDID-FLT-DS----ETPLSEVMTPREVLVVAPTG 75 (114)
T ss_pred CCCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhh-hhh-cc----CCCHHHhcCCCceEEECCCC
Confidence 45778999999999999998888899999983 8999999999995 221 11 23688999877778866 9
Q ss_pred CCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512 226 TPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (281)
Q Consensus 226 ~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~ 263 (281)
+++.++++.|.+++.+.+||++++|+++|+||..|+++
T Consensus 76 ~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 76 ITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred CCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 99999999999999999999998899999999999875
No 82
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.54 E-value=1.1e-13 Score=100.58 Aligned_cols=106 Identities=15% Similarity=0.104 Sum_probs=88.8
Q ss_pred CCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (281)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (281)
++.++++++++.+|++.|.+++.+.+||+++ ++++|+++..|+......
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~------------------------------ 51 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGPN------------------------------ 51 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhccc------------------------------
Confidence 4678899999999999999999999999985 899999999998642000
Q ss_pred hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (281)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~ 196 (281)
.....++.++|. .++.++.+++++.++++.|.+++.+++||++ +|+++|++|.+|++
T Consensus 52 ---------~~~~~~v~~~~~--~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~ 109 (111)
T cd04603 52 ---------DYETLKVCEVYI--VPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELL 109 (111)
T ss_pred ---------cccccChhheee--cCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhh
Confidence 001123666675 6688999999999999999999999999999 79999999999996
No 83
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.54 E-value=1.9e-13 Score=122.39 Aligned_cols=164 Identities=15% Similarity=0.149 Sum_probs=123.1
Q ss_pred CCcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhh
Q 023512 38 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG 116 (281)
Q Consensus 38 ~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~ 116 (281)
+...+++++|.++++++++++++.+|+++|.+++++.+||+|+ ++++|+|+..|+...
T Consensus 86 l~~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~--------------------- 144 (479)
T PRK07807 86 VAWVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGV--------------------- 144 (479)
T ss_pred HhhcccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcC---------------------
Confidence 3456788999999999999999999999999999999999985 899999999997321
Q ss_pred HhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHH
Q 023512 117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI 195 (281)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di 195 (281)
....++.++|+ .++.++++++++.++++.|.+++...+||+| +++++|+||.+|+
T Consensus 145 ----------------------~~~~~V~diMt--~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DI 200 (479)
T PRK07807 145 ----------------------DRFTQVRDVMS--TDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGA 200 (479)
T ss_pred ----------------------ccCCCHHHhcc--CCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHH
Confidence 00124677787 7899999999999999999999999999999 8999999999999
Q ss_pred HHHHHhcCCCCccccccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCc
Q 023512 196 LMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGD 251 (281)
Q Consensus 196 ~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~ 251 (281)
++......... .-..++-... +.......+..+.|.+.+.+.+.+--.+|.
T Consensus 201 l~~~~~~~~~~---~~g~l~V~aa--v~~~~~~~~~a~~Lv~aGvd~i~~D~a~~~ 251 (479)
T PRK07807 201 LRATIYTPAVD---AAGRLRVAAA--VGINGDVAAKARALLEAGVDVLVVDTAHGH 251 (479)
T ss_pred HHHhhCCchhh---hhhccchHhh--hccChhHHHHHHHHHHhCCCEEEEeccCCc
Confidence 84333221100 0001111111 222334678888888899988644325565
No 84
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.54 E-value=1.2e-13 Score=99.97 Aligned_cols=101 Identities=21% Similarity=0.290 Sum_probs=88.4
Q ss_pred eCCCCcHHHHHHHHHHcC-----ccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHH
Q 023512 157 ISPTDTVLMATKKMLELR-----LSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 230 (281)
Q Consensus 157 v~~~~~l~~~~~~~~~~~-----~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 230 (281)
+.+++++.++++.|.+++ ...+||++ +|+++|+++.+++++. . .+.++.+++..++..+.+++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~------~-~~~~v~~~~~~~~~~i~~~~~~~~ 74 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA------D-PDTPVSDIMDTDVISVSADDDQEE 74 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcC------C-CcchHHHHhCCCCeEEcCCCCHHH
Confidence 578899999999998766 46889998 7899999999999631 1 234688888888999999999999
Q ss_pred HHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512 231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (281)
Q Consensus 231 ~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~ 264 (281)
+++.|.+.+.+.+||++++|+++|+||..|++++
T Consensus 75 ~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 75 VARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred HHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 9999999999999999988999999999999875
No 85
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.54 E-value=8e-14 Score=125.66 Aligned_cols=122 Identities=25% Similarity=0.303 Sum_probs=104.7
Q ss_pred CccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeC----CeeeEeeeHHHHHHHHHhcCCCCccccccccccC-
Q 023512 143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTP- 217 (281)
Q Consensus 143 ~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~----~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~- 217 (281)
.....|. .++.++++++++.++++.|.+++++.+||+++ ++++|+||.+|+. .. . ....++.++|++
T Consensus 97 ~~e~g~i--~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~-~~-~----~~~~~V~diMt~~ 168 (495)
T PTZ00314 97 RFENGFI--MDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDID-FV-K----DKSTPVSEVMTPR 168 (495)
T ss_pred ccccccc--cCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHh-hc-c----cCCCCHHHhhCCc
Confidence 3455665 67899999999999999999999999999984 7999999999995 21 1 124579999987
Q ss_pred -CCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhchHHHH
Q 023512 218 -NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATEILL 272 (281)
Q Consensus 218 -~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~~~~~ 272 (281)
+++++++++++.+++++|.+++...+||+|++++++|+||++||++....+....
T Consensus 169 ~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~~p~a~~ 224 (495)
T PTZ00314 169 EKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRGYPNASL 224 (495)
T ss_pred CCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcccCchhhh
Confidence 8899999999999999999999999999999999999999999999876554433
No 86
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.53 E-value=2.2e-13 Score=97.71 Aligned_cols=101 Identities=27% Similarity=0.239 Sum_probs=89.2
Q ss_pred eEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHHHHH
Q 023512 155 VTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHI 234 (281)
Q Consensus 155 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~ 234 (281)
.+++++.++.++++.|.+.+.+++||+++|++.|+++..|+++ .. ..++.++|...+.++++++++.++++.
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~-~~-------~~~~~~~~~~~~~~v~~~~~l~~a~~~ 75 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDYNKFLGAVYLKDIEN-AT-------YGDVVDYIVRGIPYVRLTSTAEEAWEV 75 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHHhh-hc-------ccchhhhhhcCCcEEcCCCCHHHHHHH
Confidence 4579999999999999988999999998899999999999963 11 124677888889999999999999999
Q ss_pred hHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512 235 MHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (281)
Q Consensus 235 ~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~ 264 (281)
|.+++..++||++ +|+++|++|..|++++
T Consensus 76 ~~~~~~~~~~Vv~-~~~~iGvit~~dl~~~ 104 (104)
T cd04594 76 MMKNKTRWCPVVD-DGKFKGIVTLDSILDA 104 (104)
T ss_pred HHHcCcceEEEEE-CCEEEEEEEHHHhhcC
Confidence 9999999999998 6999999999999763
No 87
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.53 E-value=8.1e-14 Score=101.63 Aligned_cols=94 Identities=26% Similarity=0.359 Sum_probs=82.2
Q ss_pred CCCCCccEEEEEcCC-CcEEEEEehHHHHHHHHHhcCCCCcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEee
Q 023512 1 MAARRVDALLLTDSN-ALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE 79 (281)
Q Consensus 1 m~~~~~~~~~v~~~~-~~~~Gi~t~~d~~~~~~~~~~~~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d 79 (281)
|.+++.+.+||.+++ ++++|+++..|+++.+........+.+++++|.+++.++++++++.+|++.|.+++...+||++
T Consensus 19 ~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd 98 (114)
T cd04630 19 MKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVE 98 (114)
T ss_pred HHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEee
Confidence 345778899999987 8999999999998655554445556789999999999999999999999999999999999998
Q ss_pred CCeEEEEEehHHHHH
Q 023512 80 NGEVIALLDIAKCLY 94 (281)
Q Consensus 80 ~~~~vGvi~~~dll~ 94 (281)
+++++|+++..|++.
T Consensus 99 ~~~~~Gvi~~~dl~~ 113 (114)
T cd04630 99 NNELIGIISLTDIFL 113 (114)
T ss_pred CCEEEEEEEHHHhhc
Confidence 899999999999864
No 88
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.52 E-value=2.2e-13 Score=96.34 Aligned_cols=91 Identities=25% Similarity=0.345 Sum_probs=82.9
Q ss_pred CCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (281)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (281)
+++++++++++.+|++.|.+++++.+||+|+ ++++|+++..|+...
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~--------------------------------- 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAK--------------------------------- 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcC---------------------------------
Confidence 5778999999999999999999999999985 899999999998642
Q ss_pred hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (281)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~ 196 (281)
..+.++++++++.++++.|.+++.+++||++ +|+++|++|.+|++
T Consensus 49 -----------------------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~ 94 (96)
T cd04614 49 -----------------------SEVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLL 94 (96)
T ss_pred -----------------------CCcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhh
Confidence 2277899999999999999999999999999 58999999999996
No 89
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.52 E-value=3.1e-13 Score=97.53 Aligned_cols=111 Identities=33% Similarity=0.404 Sum_probs=93.9
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHH
Q 023512 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 231 (281)
++.+++.+.++.++.+.|.+.+...+||++ +++++|+++..|++...... .......+.+++...+.++++++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEG-GLDPLVTVGDVMTRDVVTVSPDTSLEEA 80 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhc-cCCccccHHHHhcCCceecCCCcCHHHH
Confidence 367789999999999999988899999999 68999999999997444332 2221222567788889999999999999
Q ss_pred HHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (281)
Q Consensus 232 ~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~ 264 (281)
++.|.+.+.+.+||++++|+++|+++..|++++
T Consensus 81 ~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~~ 113 (113)
T cd02205 81 AELMLEHGIRRLPVVDDEGRLVGIVTRSDILRA 113 (113)
T ss_pred HHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhcC
Confidence 999999999999999988999999999999763
No 90
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.52 E-value=1.4e-13 Score=101.32 Aligned_cols=116 Identities=23% Similarity=0.289 Sum_probs=87.9
Q ss_pred CCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCC
Q 023512 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (281)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (281)
+++.++++++++.+|+++|.+++++.+||+++ ++++|+++..|++........
T Consensus 1 ~~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~-------------------------- 54 (120)
T cd04641 1 KNIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAY-------------------------- 54 (120)
T ss_pred CCcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCcc--------------------------
Confidence 36788999999999999999999999999985 899999999999864211000
Q ss_pred hhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (281)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~ 196 (281)
......+...+ .....|. .++.++++++++.++++.|.+++.+.+||++ +|+++|++|..|++
T Consensus 55 -~~~~~~~~~~~---~~~~~~~--~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~ 118 (120)
T cd04641 55 -NNLDLTVGEAL---ERRSQDF--EGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDIL 118 (120)
T ss_pred -ccccCCHHHHH---hhcccCC--CCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhh
Confidence 00000000000 0112232 5678999999999999999999999999999 68999999999996
No 91
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.51 E-value=5.7e-13 Score=97.38 Aligned_cols=109 Identities=33% Similarity=0.426 Sum_probs=96.6
Q ss_pred CceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHH
Q 023512 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (281)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 231 (281)
+++.++.++.++.++...|.++++..+|+.+.++++|++|.+|+++......... .++.++|..+++++.+++++.++
T Consensus 7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~~l~Giit~~di~~~~~~~~~~~--~~v~~v~~~~~~~~~~~~~~~~~ 84 (117)
T COG0517 7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVGIITERDILRALAAGGKRL--LPVKEVMTKPVVTVDPDTPLEEA 84 (117)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHhccCCcc--ccHHHhccCCcEEECCCCCHHHH
Confidence 6689999999999999999999999999999889999999999985555443321 15888998899999999999999
Q ss_pred HHHhHh-CCCCeeeEecCCC-cEEEEEEhhhHH
Q 023512 232 LHIMHD-GKFLHLPVVDRDG-DVVDVVDVIHIT 262 (281)
Q Consensus 232 ~~~~~~-~~~~~l~Vv~~~~-~~~Gvis~~di~ 262 (281)
++.|.+ .+.+.+||+++++ +++|++|.+|++
T Consensus 85 ~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 85 LELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred HHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 999999 7999999999885 999999999974
No 92
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.51 E-value=1.4e-13 Score=118.88 Aligned_cols=118 Identities=12% Similarity=0.160 Sum_probs=100.3
Q ss_pred cccccccccCC--CeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhh
Q 023512 40 ETPVSKVMTRN--PTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG 116 (281)
Q Consensus 40 ~~~v~dim~~~--~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~ 116 (281)
..+|+++|.++ +.++++++++.+|.+.|.+++...+||+|+ |+++|+++..|+......
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~------------------ 257 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVG------------------ 257 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhC------------------
Confidence 57899999998 999999999999999999999999999985 899999999998643110
Q ss_pred HhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHH
Q 023512 117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI 195 (281)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di 195 (281)
......++.++|. +++.++.+++++.++++.|.+++...+||++ +|+++|+||.+|+
T Consensus 258 --------------------~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di 315 (321)
T PRK11543 258 --------------------GGALTTPVNEAMT--RGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDF 315 (321)
T ss_pred --------------------CCCcCCcHHHhcC--CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHH
Confidence 0011224667776 6788999999999999999999999999999 7899999999999
Q ss_pred HH
Q 023512 196 LM 197 (281)
Q Consensus 196 ~~ 197 (281)
++
T Consensus 316 ~~ 317 (321)
T PRK11543 316 YQ 317 (321)
T ss_pred Hh
Confidence 74
No 93
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.51 E-value=9.4e-13 Score=117.86 Aligned_cols=166 Identities=13% Similarity=0.072 Sum_probs=124.8
Q ss_pred CcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHh
Q 023512 39 EETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE 118 (281)
Q Consensus 39 ~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (281)
...++.++|.++++++.+++++.+++++|.+++++.+||+|+++++|+|+..|+...
T Consensus 86 ~~VKv~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~gklvGIVT~rDL~~~----------------------- 142 (475)
T TIGR01303 86 AFVKSRDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVILEDRPVGLVTDSDLLGV----------------------- 142 (475)
T ss_pred hhcchhhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEEEHHHhhcC-----------------------
Confidence 466788999999999999999999999999999999999998999999999997321
Q ss_pred hhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHH
Q 023512 119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM 197 (281)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~ 197 (281)
....++.++|+ .++.++++++++.++++.|.+++...+||++ +|+++|+||.+|+++
T Consensus 143 --------------------~~~~~V~dIMt--~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~ 200 (475)
T TIGR01303 143 --------------------DRFTQVRDIMS--TDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALR 200 (475)
T ss_pred --------------------CCCCCHHHHcc--CCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHH
Confidence 01124777787 7899999999999999999999999999999 899999999999984
Q ss_pred HHHhcCCCCccccccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEE
Q 023512 198 RVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVD 254 (281)
Q Consensus 198 ~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~G 254 (281)
......... .-..+.-.. .+.......+.++.|.+.+.+.+.+--.+|+...
T Consensus 201 ~~~~~~~~d---~~grl~Vga--av~~~~~~~~ra~~Lv~aGVd~i~~D~a~g~~~~ 252 (475)
T TIGR01303 201 ATIYTPATD---AAGRLRIGA--AVGINGDVGGKAKALLDAGVDVLVIDTAHGHQVK 252 (475)
T ss_pred HHhCCchhh---hccCceehh--eeeeCccHHHHHHHHHHhCCCEEEEeCCCCCcHH
Confidence 333221100 000010011 1333446678888888888888755335566533
No 94
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=99.50 E-value=4e-13 Score=112.62 Aligned_cols=166 Identities=15% Similarity=0.155 Sum_probs=130.6
Q ss_pred HHhcCCCCcccccccccC--CCeEecCCchHHHHHHHhHhCCCcEeeEeeC--CeEEEEEehHHHHHHHHHHHHHHHHhh
Q 023512 32 IARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEKG 107 (281)
Q Consensus 32 ~~~~~~~~~~~v~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~--~~~vGvi~~~dll~~~~~~~~~~~~~~ 107 (281)
+....++++++|+|+|.+ ++..++.+++.++.++.+.+..+.++|++.+ +.++|++..+++++.....-..
T Consensus 191 L~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~----- 265 (423)
T COG4536 191 LLGVLDLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEF----- 265 (423)
T ss_pred HhcccccccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCcc-----
Confidence 345568999999999985 7889999999999999999999999999975 7899999999998875432110
Q ss_pred hhHHHHHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCee
Q 023512 108 KAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKP 186 (281)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~ 186 (281)
+..+++....+++++++++++.+.+..|.+++-+...|+| .|.+
T Consensus 266 -----------------------------------~k~d~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i 310 (423)
T COG4536 266 -----------------------------------TKEDILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDI 310 (423)
T ss_pred -----------------------------------cHhHHHHHhcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcE
Confidence 0111111116699999999999999999999888888998 9999
Q ss_pred eEeeeHHHHHHHHHhcCCCCcccccccccc--CCCeeeeCCCCHHHHHHHhHh
Q 023512 187 RGILTSKDILMRVISQNLPADSTLVEKVMT--PNPECATIDTPIVDALHIMHD 237 (281)
Q Consensus 187 ~Givt~~di~~~~~~~~~~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~ 237 (281)
.|+||.+|++.++.+...+.......++.. .....++.+.++.+..+.|-.
T Consensus 311 ~GLVTLEDIlEEIVGdftde~d~~~~ev~~q~dgs~iidGs~~iRdlNr~l~W 363 (423)
T COG4536 311 QGLVTLEDILEEIVGDFTDEHDTLAKEVIPQSDGSFIIDGSANVRDLNRALDW 363 (423)
T ss_pred EeeeeHHHHHHHHhccccccCcccchhhcccCCCcEEEeCCCcHHHHHHhcCC
Confidence 999999999999988766544444445443 345678888888888777754
No 95
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.50 E-value=5.6e-13 Score=120.29 Aligned_cols=111 Identities=27% Similarity=0.284 Sum_probs=99.4
Q ss_pred CceeEeCCCCcHHHHHHHHHHcCccEEEEEeC----CeeeEeeeHHHHHHHHHhcCCCCccccccccccCC--CeeeeCC
Q 023512 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN--PECATID 225 (281)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~----~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~--~~~v~~~ 225 (281)
+++.++++++|+.++++.|.+++++.+||+++ ++++|+||.+|+. ... ....++.++|++. +++++++
T Consensus 108 ~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~-~v~-----~~~~~V~eIMt~~~~lvtv~~~ 181 (505)
T PLN02274 108 SDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWD-FVN-----DRETKLSEVMTSDDDLVTAPAG 181 (505)
T ss_pred CCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHh-hcc-----ccCCcHHHHhccCCCcEEECCC
Confidence 77999999999999999999999999999984 7999999999995 321 1245899999876 7899999
Q ss_pred CCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhch
Q 023512 226 TPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT 268 (281)
Q Consensus 226 ~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~ 268 (281)
+++.++++.|.+++...+||+|++|+++|+||++||+++...+
T Consensus 182 ~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~p 224 (505)
T PLN02274 182 IDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGYP 224 (505)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCc
Confidence 9999999999999999999999899999999999999997654
No 96
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.50 E-value=1.6e-13 Score=100.13 Aligned_cols=94 Identities=23% Similarity=0.340 Sum_probs=80.6
Q ss_pred CCCCCccEEEEEcCCCcEEEEEehHHHHHHHHHhcCCCCcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC
Q 023512 1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN 80 (281)
Q Consensus 1 m~~~~~~~~~v~~~~~~~~Gi~t~~d~~~~~~~~~~~~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~ 80 (281)
|.+++...+||+|++|++.|++|..|+++..........+.+++++|.+++.++.+++++.+|++.|.+++...+||+++
T Consensus 19 ~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~ 98 (114)
T cd04619 19 LGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDE 98 (114)
T ss_pred HHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECC
Confidence 34678899999998899999999999985443312233467899999999999999999999999999999999999985
Q ss_pred -CeEEEEEehHHHHH
Q 023512 81 -GEVIALLDIAKCLY 94 (281)
Q Consensus 81 -~~~vGvi~~~dll~ 94 (281)
++++|+++..|+++
T Consensus 99 ~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 99 NARPLGVLNARDALK 113 (114)
T ss_pred CCcEEEEEEhHhhcc
Confidence 89999999999863
No 97
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.50 E-value=3.2e-13 Score=99.37 Aligned_cols=111 Identities=25% Similarity=0.288 Sum_probs=93.6
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCC--------CCccccccccccCCCeeee
Q 023512 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL--------PADSTLVEKVMTPNPECAT 223 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~--------~~~~~~v~~~~~~~~~~v~ 223 (281)
++.++++++++.++.+.|.+.+..++||++ +|+++|+++..++++....... .....++.++|...+.+++
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~i~ 81 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVITVH 81 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhCCCeEEC
Confidence 467899999999999999988889999999 6999999999999743221100 1223468888888999999
Q ss_pred CCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512 224 IDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (281)
Q Consensus 224 ~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~ 264 (281)
+++++.++++.|.+.+...+||+++ |+++|+++..|++++
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~~ 121 (121)
T cd04584 82 PLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLRT 121 (121)
T ss_pred CCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhcC
Confidence 9999999999999999999999985 999999999999863
No 98
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.50 E-value=4.3e-13 Score=97.76 Aligned_cols=109 Identities=20% Similarity=0.285 Sum_probs=87.7
Q ss_pred CCCeEecCCchHHHHHHHhHhCC-CcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCC
Q 023512 49 RNPTFVLSDTLAVEALQKMVQGK-FRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSIS 126 (281)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~-~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (281)
+++.++++++++.+|++.|.+++ ...+||+++ ++++|+++..|++......
T Consensus 1 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~--------------------------- 53 (114)
T cd04801 1 RDFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQ--------------------------- 53 (114)
T ss_pred CCcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHhh---------------------------
Confidence 35678999999999999997765 889999986 8999999999987542100
Q ss_pred ChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512 127 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (281)
Q Consensus 127 ~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~ 196 (281)
....++.++|.+..++.++.+++++.++++.|.+++.+++||++ +|+++|++|.+|++
T Consensus 54 ------------~~~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~ 112 (114)
T cd04801 54 ------------WAQTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLL 112 (114)
T ss_pred ------------ccccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEecccee
Confidence 01123555665323466899999999999999999999999999 58999999999986
No 99
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.49 E-value=5.5e-13 Score=119.52 Aligned_cols=117 Identities=29% Similarity=0.342 Sum_probs=102.4
Q ss_pred CccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-C---CeeeEeeeHHHHHHHHHhcCCCCcccccccccc-C
Q 023512 143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E---NKPRGILTSKDILMRVISQNLPADSTLVEKVMT-P 217 (281)
Q Consensus 143 ~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~---~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~-~ 217 (281)
...+.|. .++.+++++.++.++++.|.+++++++||++ + ++++|+||.+|++ ... . ...++.++|. .
T Consensus 81 ~~~~~~~--~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~-~~~-~----~~~~V~dvm~~~ 152 (450)
T TIGR01302 81 RAENGII--SDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIR-FVK-D----KGKPVSEVMTRE 152 (450)
T ss_pred cccCcee--cCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHh-hhh-c----CCCCHHHhhCCC
Confidence 3455565 6789999999999999999999999999999 5 6999999999996 221 1 2347899998 4
Q ss_pred CCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512 218 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA 267 (281)
Q Consensus 218 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~ 267 (281)
+++++++++++.++++.|.+++.+.+||+|++|+++|+||..||++....
T Consensus 153 ~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~~ 202 (450)
T TIGR01302 153 EVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRKF 202 (450)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcccC
Confidence 89999999999999999999999999999999999999999999988543
No 100
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.49 E-value=1.2e-12 Score=94.72 Aligned_cols=107 Identities=21% Similarity=0.279 Sum_probs=89.8
Q ss_pred CCCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (281)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (281)
+++.++++++++.+|.+.|.++++..+||+++++++|+++..++......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~dl~~~~~~------------------------------ 51 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEGGRVVGIISRRDVEKALRH------------------------------ 51 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeCCEEEEEEEHHHHHHHHhc------------------------------
Confidence 46788999999999999999889999999988999999999998653100
Q ss_pred hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHH
Q 023512 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (281)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~ 196 (281)
.....++.++|. .++.++++++++.++++.|.+.+.+.+||+++|+++|++|..|++
T Consensus 52 ---------~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Gvvt~~di~ 108 (110)
T cd04595 52 ---------GLGHAPVKDYMS--TDVVTVPPDTPLSEVQELMVEHDIGRVPVVEDGRLVGIVTRTDLL 108 (110)
T ss_pred ---------ccccCcHHHHhc--CCCEEECCCCcHHHHHHHHHHcCCCeeEEEeCCEEEEEEEhHHhh
Confidence 001223555665 668899999999999999999999999999989999999999996
No 101
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.49 E-value=6.3e-13 Score=95.57 Aligned_cols=100 Identities=17% Similarity=0.215 Sum_probs=87.8
Q ss_pred CceeEeCCCCcHHHHHHHHHHcCccEEEEEeC----CeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCC
Q 023512 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTP 227 (281)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~----~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~ 227 (281)
+....++++.++.++.+.+.+.+...+||+++ |+++|+++.+|+.... .. +|.+++.+++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~-~~-----------~m~~~~~~v~~~~~ 69 (105)
T cd04591 2 PLVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVAL-KN-----------YIDPSPFTVSPRTS 69 (105)
T ss_pred CceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHH-HH-----------hccCCCceECCCCc
Confidence 44678899999999999999888888999985 8899999999996332 21 67778899999999
Q ss_pred HHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512 228 IVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (281)
Q Consensus 228 l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~ 264 (281)
+.++++.|.+++.+++||++ +|+++|+||+.|++++
T Consensus 70 l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~~ 105 (105)
T cd04591 70 LEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLKA 105 (105)
T ss_pred HHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhcC
Confidence 99999999999999999995 7999999999999864
No 102
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.48 E-value=7.6e-13 Score=97.83 Aligned_cols=120 Identities=22% Similarity=0.286 Sum_probs=93.4
Q ss_pred cCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCC
Q 023512 48 TRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSIS 126 (281)
Q Consensus 48 ~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (281)
++++.++++++++.++.+.|.+++++.+||+++ |+++|+++..+++..........
T Consensus 1 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~----------------------- 57 (124)
T cd04600 1 SRDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRP----------------------- 57 (124)
T ss_pred CCCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccch-----------------------
Confidence 357889999999999999999999999999986 99999999999975432110000
Q ss_pred ChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512 127 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (281)
Q Consensus 127 ~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~ 196 (281)
............++.++|. .++.++++++++.++++.|.+.+.+++||++ +|+++|++|..|++
T Consensus 58 ----~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~ 122 (124)
T cd04600 58 ----LRGRLRGRDKPETVGDIMS--PPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLI 122 (124)
T ss_pred ----hhhhhhcccccccHHHhcc--CCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhh
Confidence 0000000112234666775 6789999999999999999999999999999 89999999999996
No 103
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.48 E-value=1.1e-12 Score=93.96 Aligned_cols=102 Identities=25% Similarity=0.310 Sum_probs=87.6
Q ss_pred CCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCChh
Q 023512 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 129 (281)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (281)
++.++++++++.++++.|.+++...+||+++++++|+++..+++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~Giv~~~~l~~~~--------------------------------- 48 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVEDGKLVGIITSRDVRRAH--------------------------------- 48 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEehHHhhccc---------------------------------
Confidence 56789999999999999999999999999999999999999986420
Q ss_pred hHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHH
Q 023512 130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (281)
Q Consensus 130 ~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~ 196 (281)
...++.++|. .++.++++++++.++++.|.+++..++||+++|+++|++|..|++
T Consensus 49 ----------~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~~l~ 103 (105)
T cd04599 49 ----------PNRLVADAMT--REVVTISPEASLLEAKRLMEEKKIERLPVLRERKLVGIITKGTIA 103 (105)
T ss_pred ----------ccCCHHHHcc--CCCEEECCCCCHHHHHHHHHHcCCCEeeEEECCEEEEEEEHHHhc
Confidence 0012344554 678899999999999999999999999999989999999999986
No 104
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.48 E-value=1.1e-12 Score=96.32 Aligned_cols=110 Identities=22% Similarity=0.334 Sum_probs=89.2
Q ss_pred CCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (281)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (281)
++.++++++++.+|++.|..+++..+||+++ ++++|+++..++.......
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~----------------------------- 52 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGG----------------------------- 52 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcC-----------------------------
Confidence 5788999999999999999999999999986 8999999999987642110
Q ss_pred hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-C---CeeeEeeeHHHHH
Q 023512 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E---NKPRGILTSKDIL 196 (281)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~---~~~~Givt~~di~ 196 (281)
......++.++|....++.++++++++.++++.|.+++.+++||++ + |+++|+||.+|++
T Consensus 53 --------~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~ 116 (118)
T cd04617 53 --------ADLQKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNIT 116 (118)
T ss_pred --------CCccCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhhee
Confidence 0011223455664213688999999999999999999999999998 5 6999999999985
No 105
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.47 E-value=1.1e-12 Score=99.82 Aligned_cols=110 Identities=29% Similarity=0.350 Sum_probs=93.3
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCC--C-------------------------
Q 023512 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL--P------------------------- 205 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~--~------------------------- 205 (281)
++.++++++++.++++.|.+.+++.+||+++|+++|+++..|+++.+..... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDGGKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEETKR 81 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeECCeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHHHH
Confidence 4778999999999999999989999999988899999999999744332210 0
Q ss_pred ----CccccccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512 206 ----ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (281)
Q Consensus 206 ----~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~ 263 (281)
....++.++|...+.++++++++.++++.|.+.+.+++||+++ |+++|+++..|++.
T Consensus 82 ~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 82 ALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 0134577788888999999999999999999999999999986 99999999999874
No 106
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.47 E-value=1.6e-13 Score=120.56 Aligned_cols=96 Identities=32% Similarity=0.445 Sum_probs=90.4
Q ss_pred CCCCCccEEEEEcCCCcEEEEEehHHHHHHHHHhcCCCCcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC
Q 023512 1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN 80 (281)
Q Consensus 1 m~~~~~~~~~v~~~~~~~~Gi~t~~d~~~~~~~~~~~~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~ 80 (281)
|.++|++++.++++++...||+|.+|++++++..+.+. ..+|+.+|+.++++++.++.+.+|+-.|.+++++++||.++
T Consensus 175 m~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~-~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e~ 253 (610)
T COG2905 175 MKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSK-TQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTED 253 (610)
T ss_pred HHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCc-ccchhhhhccCceeecCcchHHHHHHHHHHhCCceeeeecC
Confidence 67899999999999999999999999999999888887 78999999999999999999999999999999999999999
Q ss_pred CeEEEEEehHHHHHHHH
Q 023512 81 GEVIALLDIAKCLYDAI 97 (281)
Q Consensus 81 ~~~vGvi~~~dll~~~~ 97 (281)
|+++|+|+..|++....
T Consensus 254 gq~~Gilt~~dIl~l~s 270 (610)
T COG2905 254 GQPLGILTLTDILRLFS 270 (610)
T ss_pred CeeeEEeeHHHHHHhhC
Confidence 99999999999987543
No 107
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.47 E-value=4.2e-13 Score=112.95 Aligned_cols=112 Identities=26% Similarity=0.345 Sum_probs=97.6
Q ss_pred CCccccccCCCc-eeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCC
Q 023512 142 PSLSTIIPEKSK-VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 219 (281)
Q Consensus 142 ~~v~~~m~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~ 219 (281)
.++.++|. ++ +.++.+++++.++++.|.+.+.+++||++ +|+++|+++..|+++ ...... ....+++++|.+.+
T Consensus 155 ~~v~~im~--~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~-~~~~~~-~~~~~v~~im~~~~ 230 (268)
T TIGR00393 155 VKVKDLMQ--TTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRR-ALLGGG-SLKSEVRDFMTLGP 230 (268)
T ss_pred hhHHHHhC--CCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHH-HHhcCC-cccCcHHHhCCCCC
Confidence 46888887 55 88999999999999999988999999999 899999999999974 433222 22457999999999
Q ss_pred eeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEE
Q 023512 220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVD 257 (281)
Q Consensus 220 ~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis 257 (281)
.++.+++++.++++.|.+.+..++||+|++|+++|+|+
T Consensus 231 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 231 KTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred eEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 99999999999999999999999999998899999985
No 108
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.47 E-value=6e-13 Score=119.51 Aligned_cols=120 Identities=19% Similarity=0.256 Sum_probs=104.9
Q ss_pred cCCCccccccCCCceeEeCCCCcHHHHHHHHHH-----cCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccc
Q 023512 140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLE-----LRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEK 213 (281)
Q Consensus 140 ~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~-----~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~ 213 (281)
...++.++|+ +++.+++++.|+.++++.|++ ++...++|+| +++++|+++.+|++.. . .+.++++
T Consensus 129 ~e~tvg~iMt--~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a------~-~~~~v~~ 199 (449)
T TIGR00400 129 SDDSAGRIMT--IEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILA------K-PEEILSS 199 (449)
T ss_pred CcchHHHhCc--CceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcC------C-CCCcHHH
Confidence 4577899998 789999999999999999975 3567788888 8899999999999621 1 2347999
Q ss_pred cccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhch
Q 023512 214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT 268 (281)
Q Consensus 214 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~ 268 (281)
+|.+++.++++++++.++++.|.+++...+||+|++|+++|+||.+|+++.....
T Consensus 200 im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~ 254 (449)
T TIGR00400 200 IMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSE 254 (449)
T ss_pred HhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999886653
No 109
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.47 E-value=9.6e-13 Score=119.18 Aligned_cols=116 Identities=27% Similarity=0.342 Sum_probs=102.9
Q ss_pred CccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCcccccccccc-CCCe
Q 023512 143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT-PNPE 220 (281)
Q Consensus 143 ~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~-~~~~ 220 (281)
.+.++|. .++.+++++.++.++++.|.+++++++||++ +++++|+||.+|+.. .. . ...++.++|. ++++
T Consensus 88 ~~~dim~--~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~-~~----~-~~~~V~dim~~~~~v 159 (486)
T PRK05567 88 RSESGVV--TDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRF-ET----D-LSQPVSEVMTKERLV 159 (486)
T ss_pred hhhhccc--CCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhh-cc----c-CCCcHHHHcCCCCCE
Confidence 3566776 7899999999999999999999999999999 899999999999952 21 1 2347889998 7889
Q ss_pred eeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhh
Q 023512 221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 266 (281)
Q Consensus 221 ~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~ 266 (281)
++++++++.++++.|.+++.+.+||+|++|+++|+||.+||++...
T Consensus 160 ~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~ 205 (486)
T PRK05567 160 TVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEE 205 (486)
T ss_pred EECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhh
Confidence 9999999999999999999999999999999999999999998754
No 110
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=5.2e-13 Score=96.92 Aligned_cols=93 Identities=34% Similarity=0.606 Sum_probs=80.5
Q ss_pred CCCCccEEEEEcCCCcEEEEEehHHHHHHHHHhcCCCCcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeCC
Q 023512 2 AARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENG 81 (281)
Q Consensus 2 ~~~~~~~~~v~~~~~~~~Gi~t~~d~~~~~~~~~~~~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~ 81 (281)
.+++...+||++++++++|+++..|+++.+..........++.++|.+++.++++++++.++++.|.+++.+.+||++++
T Consensus 20 ~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~~ 99 (113)
T cd04623 20 AEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDGG 99 (113)
T ss_pred HHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeCC
Confidence 45678899999988899999999999865544333333568999999999999999999999999999999999999889
Q ss_pred eEEEEEehHHHHH
Q 023512 82 EVIALLDIAKCLY 94 (281)
Q Consensus 82 ~~vGvi~~~dll~ 94 (281)
+++|+++..|+++
T Consensus 100 ~~~Gvit~~di~~ 112 (113)
T cd04623 100 KLVGIVSIGDVVK 112 (113)
T ss_pred EEEEEEEHHHhhc
Confidence 9999999999864
No 111
>PRK11573 hypothetical protein; Provisional
Probab=99.46 E-value=9.5e-13 Score=116.56 Aligned_cols=128 Identities=15% Similarity=0.149 Sum_probs=107.8
Q ss_pred hcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe--CCeeeEeeeHHHHHHHHHhcCCCCcccccccccc
Q 023512 139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT 216 (281)
Q Consensus 139 ~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~ 216 (281)
+...++.++|+|..++.+++.++++.++++.+.+++++++||.+ .+.++|++..+|++. ............+.+++
T Consensus 184 l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~-~~~~~~~~~~~~l~~~~- 261 (413)
T PRK11573 184 LEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYR-LMTEKKEFTKENMLRAA- 261 (413)
T ss_pred cCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHH-HhhccCcCCHHHHHhhc-
Confidence 46778999999999999999999999999999999999999998 478999999999984 33222111111233444
Q ss_pred CCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhch
Q 023512 217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT 268 (281)
Q Consensus 217 ~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~ 268 (281)
+++..++++.++.++++.|.+++.+...|+||.|...|+||..||+...-..
T Consensus 262 r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGe 313 (413)
T PRK11573 262 DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGD 313 (413)
T ss_pred cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCC
Confidence 5789999999999999999999999999999999999999999999986543
No 112
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.46 E-value=2e-12 Score=93.69 Aligned_cols=109 Identities=24% Similarity=0.321 Sum_probs=89.9
Q ss_pred CCCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (281)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (281)
+++.++++++++.++.+.|.+++++.+||+++++++|+++..+++......
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~----------------------------- 51 (111)
T cd04800 1 RPPVTCSPDTTIREAARLMTEHRVSSLLVVDDGRLVGIVTDRDLRNRVVAE----------------------------- 51 (111)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHhcc-----------------------------
Confidence 467889999999999999999999999999989999999999987532110
Q ss_pred hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHH
Q 023512 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (281)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~ 196 (281)
......++.++|. .++.++++++++.++++.|.+.+.+++||+++|+++|++|.+|++
T Consensus 52 --------~~~~~~~i~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Giit~~di~ 109 (111)
T cd04800 52 --------GLDPDTPVSEVMT--APPITIPPDATVFEALLLMLERGIHHLPVVDDGRLVGVISATDLL 109 (111)
T ss_pred --------CCCccCCHHHHhC--CCCeEECCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhh
Confidence 0001123445554 678899999999999999999999999999989999999999996
No 113
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=1.3e-12 Score=95.11 Aligned_cols=111 Identities=25% Similarity=0.419 Sum_probs=90.0
Q ss_pred CCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCC
Q 023512 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (281)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (281)
+++.++++++++.++.+.|.++++..+||+++ ++++|+++..+++.........
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~------------------------- 55 (114)
T cd04629 1 RNPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYH------------------------- 55 (114)
T ss_pred CCCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhc-------------------------
Confidence 35778999999999999999989999999985 8999999999997653221100
Q ss_pred hhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHH
Q 023512 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (281)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~ 196 (281)
.....++.++|. .++.++++++++.++++.|.+.+...+||+++|+++|++|.+|++
T Consensus 56 ----------~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvit~~di~ 112 (114)
T cd04629 56 ----------CDGVATVRDIMT--TEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDDGKLVGQISRRDVL 112 (114)
T ss_pred ----------cCCCccHHHHhc--cCceEECCCCcHHHHHHHHHHhCCCccCEEECCEEEEEEEHHHHh
Confidence 001123555565 568889999999999999999999999999989999999999996
No 114
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.46 E-value=2.3e-12 Score=93.19 Aligned_cols=107 Identities=19% Similarity=0.266 Sum_probs=88.9
Q ss_pred CCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCChh
Q 023512 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 129 (281)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (281)
++.++++++++.+|++.|.++++..+||+++++++|+++..+++......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~~l~~~~~~~------------------------------ 51 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDDGRPLGIVTERDILRLLASG------------------------------ 51 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEeHHHHHHHHhcC------------------------------
Confidence 56789999999999999999999999999999999999999987542110
Q ss_pred hHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512 130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (281)
Q Consensus 130 ~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~ 196 (281)
.....++.++|. .++.++++++++.++++.|.+.+..++||++ +|++.|+++.+|++
T Consensus 52 --------~~~~~~v~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~ 109 (111)
T cd04611 52 --------PDLQTPVGEVMS--SPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLL 109 (111)
T ss_pred --------CCCCcCHHHhcC--CCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhh
Confidence 001123555554 6788899999999999999999999999998 69999999999996
No 115
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.46 E-value=1.1e-12 Score=96.49 Aligned_cols=119 Identities=27% Similarity=0.376 Sum_probs=92.1
Q ss_pred CCCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (281)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (281)
+++.+++++.++.++++.|.+.++..+||+++++++|+++..++........... ..
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~i~~~~l~~~~~~~~~~~-----------------------~~ 57 (122)
T cd04585 1 KNPITVTPDTSLMEALKLMKENSIRRLPVVDRGKLVGIVTDRDLKLASPSKATTL-----------------------DI 57 (122)
T ss_pred CCCEEeCCCCcHHHHHHHHHhCCcceeeEecCCeEEEEEeHHHHHHhhhcccccc-----------------------cc
Confidence 3577899999999999999999999999999999999999999976421110000 00
Q ss_pred hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (281)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~ 196 (281)
.. ........++.++|. +++.++++++++.+++..|.+.+.+++||++ +|.++|++|..|++
T Consensus 58 ~~----~~~~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~ 120 (122)
T cd04585 58 WE----LYYLLSKIKVSDIMT--RDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLF 120 (122)
T ss_pred hh----hhhhhcccCHHHhcc--CCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhh
Confidence 00 000012234666775 6789999999999999999999999999999 69999999999996
No 116
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.46 E-value=9.3e-13 Score=96.65 Aligned_cols=110 Identities=20% Similarity=0.290 Sum_probs=90.5
Q ss_pred ceeEeCCCCcHHHHHHHHHHcC-ccEEEEEeCCeeeEeeeHHHHHHHHHhcCC---CCccccccccccCCCeeeeCCCCH
Q 023512 153 KVVTISPTDTVLMATKKMLELR-LSSAVVTVENKPRGILTSKDILMRVISQNL---PADSTLVEKVMTPNPECATIDTPI 228 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~-~~~~~V~~~~~~~Givt~~di~~~~~~~~~---~~~~~~v~~~~~~~~~~v~~~~~l 228 (281)
++.++++++++.++++.|...+ ++.+||+++|++.|+++..|++. .+.... .....++.++|...+.++++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~~l~~-~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~ 80 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDDGRPVGLIMREALME-LLSTPYGRALYGKKPVSEVMDPDPLIVEADTPL 80 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEECCeeEEEEEHHHHHH-HHhchhhHHHHcCCcHHHhcCCCcEEecCCCCH
Confidence 4667899999999999998776 88999998899999999999963 332210 012346889999999999999999
Q ss_pred HHHHHHhHhCCCC---eeeEecCCCcEEEEEEhhhHHH
Q 023512 229 VDALHIMHDGKFL---HLPVVDRDGDVVDVVDVIHITH 263 (281)
Q Consensus 229 ~~~~~~~~~~~~~---~l~Vv~~~~~~~Gvis~~di~~ 263 (281)
.++++.|.+++.. ..||++++|+++|+||..|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 81 EEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred HHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 9999999998764 4468888899999999999975
No 117
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.45 E-value=2.6e-12 Score=92.88 Aligned_cols=105 Identities=28% Similarity=0.408 Sum_probs=88.1
Q ss_pred CCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCC
Q 023512 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (281)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (281)
+++.++++++++.++++.|.++++..+||+++ |+++|+++..+++......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~---------------------------- 53 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARD---------------------------- 53 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhC----------------------------
Confidence 57788999999999999999999999999986 8999999999997542110
Q ss_pred hhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (281)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~ 196 (281)
..++.++|. .++.++++++++.++++.|.+.+...+||++ +|++.|++|..|++
T Consensus 54 -------------~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~ 108 (110)
T cd04605 54 -------------KKSVEDIMT--RNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDIS 108 (110)
T ss_pred -------------ccCHHHhcC--CCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhh
Confidence 011334443 5688899999999999999999999999998 78999999999995
No 118
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=2e-12 Score=93.65 Aligned_cols=107 Identities=21% Similarity=0.256 Sum_probs=88.8
Q ss_pred CCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (281)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (281)
++..+++++++.++++.|.+++++.+||+++ ++++|+++..|++......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~----------------------------- 52 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFE----------------------------- 52 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhc-----------------------------
Confidence 5678999999999999999999999999986 9999999999987542110
Q ss_pred hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHH
Q 023512 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (281)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~ 196 (281)
.....++.++|. .++.++.+++++.++++.|.+++...+||+++|+++|+||..|++
T Consensus 53 ---------~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~di~ 109 (111)
T cd04626 53 ---------SFLEKKVFNIVS--QDVFYVNEEDTIDEALDIMREKQIGRLPVVDDNKLIGVVRTKDIL 109 (111)
T ss_pred ---------ccccCcHHHHhc--CCcEEEcCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEhHHhc
Confidence 000123445554 678899999999999999999999999999989999999999996
No 119
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=2.4e-12 Score=94.73 Aligned_cols=118 Identities=24% Similarity=0.284 Sum_probs=91.8
Q ss_pred CCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCChh
Q 023512 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 129 (281)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (281)
+++++++++++.++++.|.++++..+||+++++++|+++..++.............
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~~~~~~~------------------------ 57 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEGGKLVGIVTEKDIADALRSFRPLVRD------------------------ 57 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEECCEEEEEEchHHHHHhhhhhhhcccc------------------------
Confidence 57789999999999999999999999999999999999999997643221100000
Q ss_pred hHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHH
Q 023512 130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (281)
Q Consensus 130 ~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~ 196 (281)
..........++.++|. .++.++++++++.++++.|.+.+.+.+||+++|+++|++|..|++
T Consensus 58 ---~~~~~~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvi~~~dl~ 119 (121)
T cd04633 58 ---RHQERRIRNLPVSDIMT--RPVITIEPDTSVSDVASLMLENNIGGLPVVDDGKLVGIVTRTDIL 119 (121)
T ss_pred ---hhhhhhhhccCHHHHcc--CCceEECCCCcHHHHHHHHHHcCCCcccEEECCEEEEEEEHHHhh
Confidence 00001112234556665 678899999999999999999999999999889999999999996
No 120
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.45 E-value=2.3e-12 Score=93.58 Aligned_cols=108 Identities=27% Similarity=0.359 Sum_probs=88.9
Q ss_pred CCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (281)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (281)
++.++.+++++.++++.|.+++...+||+++ ++++|+++..++.......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~----------------------------- 52 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALES----------------------------- 52 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhh-----------------------------
Confidence 4678899999999999999999999999986 8999999999997532110
Q ss_pred hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (281)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~ 196 (281)
+.....++.++|. .++.++.+++++.++++.|.+.+...+||++ +|+++|++|..|++
T Consensus 53 --------~~~~~~~i~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~ 111 (113)
T cd04615 53 --------EELKDAKVREVMN--SPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDIL 111 (113)
T ss_pred --------hhhcCCcHHHhcc--CCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhh
Confidence 0111223555665 6788999999999999999999999999998 78999999999996
No 121
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.45 E-value=1.3e-12 Score=98.30 Aligned_cols=132 Identities=21% Similarity=0.313 Sum_probs=94.4
Q ss_pred cCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCC
Q 023512 48 TRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSIS 126 (281)
Q Consensus 48 ~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (281)
++++.++++++++.++++.|.+++++++||+++ ++++|+++..+++............ . ......+
T Consensus 1 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~--~-~~~~~~~---------- 67 (135)
T cd04586 1 TTDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRA--R-WLDLLAG---------- 67 (135)
T ss_pred CCCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhh--h-HHHHhcc----------
Confidence 357888999999999999999999999999986 8999999999997643211000000 0 0000000
Q ss_pred ChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHH
Q 023512 127 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (281)
Q Consensus 127 ~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~ 196 (281)
........ ......++.++|. .++.++++++++.++++.|.+.+.+.+||+++|+++|++|..|++
T Consensus 68 -~~~~~~~~-~~~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd~g~~~Gvit~~di~ 133 (135)
T cd04586 68 -AEELAAAF-VRSHGRKVADVMT--RPVVTVGEDTPLAEVAELMEEHRIKRVPVVRGGRLVGIVSRADLL 133 (135)
T ss_pred -hHHHHHHH-HHhcCCCHHHHhC--CCceEeCCCCcHHHHHHHHHHcCCCccCEecCCEEEEEEEhHhhh
Confidence 00000000 0112345677775 678999999999999999999999999999999999999999986
No 122
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.45 E-value=3.2e-12 Score=92.14 Aligned_cols=104 Identities=20% Similarity=0.264 Sum_probs=88.0
Q ss_pred CCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCC
Q 023512 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (281)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (281)
+++.+++++.++.++++.|.++++..+||+++ ++++|+++..|++....
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~------------------------------ 51 (109)
T cd04583 2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYK------------------------------ 51 (109)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHhh------------------------------
Confidence 46778999999999999999999999999986 89999999999865310
Q ss_pred hhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (281)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~ 196 (281)
...++.++|. .++..+++++++.++++.|.+.+..++||++ +|+++|++|.+|++
T Consensus 52 ------------~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~ 107 (109)
T cd04583 52 ------------EAKSLEDIML--EDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLV 107 (109)
T ss_pred ------------cCCcHhHhhc--CCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhh
Confidence 0112445554 5688899999999999999998999999998 78999999999996
No 123
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=1.8e-12 Score=93.93 Aligned_cols=106 Identities=14% Similarity=0.168 Sum_probs=88.2
Q ss_pred CCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (281)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (281)
++.++++++++.++++.|.+.+...+||+++ ++++|+++..++.......
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~----------------------------- 52 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEG----------------------------- 52 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhc-----------------------------
Confidence 5678899999999999999889999999986 8999999999987542110
Q ss_pred hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (281)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~ 196 (281)
....++.++|. .++.++++++++.++++.|.+++...+||++ +|+++|++|..|+.
T Consensus 53 ----------~~~~~v~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~ 109 (111)
T cd04639 53 ----------GPDAPVRGVMR--RDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVG 109 (111)
T ss_pred ----------CCCCcHHHHhc--CCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhh
Confidence 00123555554 6788999999999999999999999999999 59999999999995
No 124
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.44 E-value=3.4e-12 Score=92.28 Aligned_cols=107 Identities=20% Similarity=0.314 Sum_probs=88.5
Q ss_pred CCCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (281)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (281)
+++..+++++++.++++.|.+++++.+||+++++++|+++..++++.....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~~l~~~~~~~----------------------------- 51 (110)
T cd04588 1 KPLITLNPNATLREAARLFNTHHIHGAPVVDDGKLVGIVTLSDIAHAIARG----------------------------- 51 (110)
T ss_pred CCcEEECCCCCHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHhcc-----------------------------
Confidence 367789999999999999999999999999889999999999987641100
Q ss_pred hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (281)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~ 196 (281)
....++.++|. .++.+++++.++.++++.|.+.+...+||++ +|++.|+++..|++
T Consensus 52 ----------~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~ 108 (110)
T cd04588 52 ----------LELAKVKDVMT--KDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDIL 108 (110)
T ss_pred ----------ccccCHHHHhc--CCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhh
Confidence 00022444444 6789999999999999999999999999999 69999999999996
No 125
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=4.5e-12 Score=93.46 Aligned_cols=118 Identities=27% Similarity=0.302 Sum_probs=90.0
Q ss_pred CCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCChh
Q 023512 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 129 (281)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (281)
++.++++++++.+|++.|.++++..+||+++++++|+++..++..................
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~------------------- 62 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVEDNELVGVISDRDYLKAISPFLGTAGETEKDL------------------- 62 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeCCeEEEEEEHHHHHHHHHHHhccccchHHHH-------------------
Confidence 5778999999999999999999999999999999999999999765332111000000000
Q ss_pred hHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512 130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (281)
Q Consensus 130 ~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~ 196 (281)
.....++.++|. .++.++++++++.++++.|.+++...+||++ +|+++|+++..|++
T Consensus 63 --------~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll 120 (122)
T cd04637 63 --------ATLNRRAHQIMT--RDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLL 120 (122)
T ss_pred --------HHHHhHHHHhhc--CCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhh
Confidence 000012344454 6688999999999999999999999999998 68999999999996
No 126
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=4.5e-12 Score=93.68 Aligned_cols=116 Identities=21% Similarity=0.158 Sum_probs=87.9
Q ss_pred CCeEecCCchHHHHHHHhHhCCCcEeeEeeC--CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCC
Q 023512 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (281)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~--~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (281)
++.++++++++.+|++.|.+++++++||+++ ++++|+++..|+++.......... ...
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~-~~~------------------- 61 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFP-GLD------------------- 61 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhcc-chh-------------------
Confidence 5678899999999999999999999999984 799999999999865322111000 000
Q ss_pred hhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHH
Q 023512 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI 195 (281)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di 195 (281)
... ........+|. .++.++++++++.++++.|.+++.+++||++ +++++|+||.+|+
T Consensus 62 ------~~~--~~~~~~~~~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di 120 (123)
T cd04627 62 ------PLY--PIPLRDLTIGT--SDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDV 120 (123)
T ss_pred ------hhh--hhhhhhcccCc--CCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHh
Confidence 000 00001223444 6788999999999999999999999999998 7899999999998
No 127
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.44 E-value=2.7e-12 Score=96.61 Aligned_cols=131 Identities=18% Similarity=0.239 Sum_probs=93.5
Q ss_pred CCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (281)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (281)
++.++++++++.+|++.|.+++...+||+|+ ++++|+++..+++......... ......+.... ..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~---~~~~~~~~~~~---~~------- 68 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNER---GLPKKSIKMKR---KA------- 68 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhccccc---ccchhhhhhhh---hc-------
Confidence 4678899999999999999999999999986 9999999999998653211000 00000000000 00
Q ss_pred hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHH
Q 023512 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (281)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~ 196 (281)
... ..........++.++|. .++..+++++++.++++.|.+.+.+++||+++|+++|+||..|++
T Consensus 69 ~~~-~~~~~~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~Gvit~~di~ 133 (135)
T cd04621 69 GQK-RYRYVKEVPLVAEDIMT--EEIITVSPNDDVVDAAKLMLEANISGLPVVDNDNIVGVITKTDIC 133 (135)
T ss_pred ccc-cccccccccccHHHhcC--CCCeEECCCCCHHHHHHHHHHcCCCEEEEEeCCEEEEEEEHHHHh
Confidence 000 00001123345778886 678899999999999999999999999999989999999999996
No 128
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.43 E-value=1.3e-12 Score=108.58 Aligned_cols=134 Identities=15% Similarity=0.239 Sum_probs=110.6
Q ss_pred EehHHH-HHHHHHhcCCCCccccccccc--CCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHH
Q 023512 22 LTDKDI-ATRVIARELNLEETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAI 97 (281)
Q Consensus 22 ~t~~d~-~~~~~~~~~~~~~~~v~dim~--~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~ 97 (281)
||.... .+++...-..-+=.+|+|+|. ....++.+++++.+-.++-.+++++++||+|. .+++|+++.+|++..
T Consensus 168 FTVAtmIN~Al~n~lIKkdI~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~-- 245 (432)
T COG4109 168 FTVATMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDK-- 245 (432)
T ss_pred eeHHHHHHHHHHHhhhhhheeeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcC--
Confidence 444433 334433333333458999999 57889999999999999999999999999996 899999999998642
Q ss_pred HHHHHHHHhhhhHHHHHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccE
Q 023512 98 ARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSS 177 (281)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~ 177 (281)
....++..+|+ +++.++.+.+|+..+.+.|...++..
T Consensus 246 -----------------------------------------~~~t~ieKVMt--knp~tv~~~tsVAsvaq~MiwE~iem 282 (432)
T COG4109 246 -----------------------------------------KPSTTIEKVMT--KNPITVRAKTSVASVAQMMIWEGIEM 282 (432)
T ss_pred -----------------------------------------CCCccHHHHhc--cCCeeecccchHHHHHHHHHhcccee
Confidence 23446788887 88999999999999999999999999
Q ss_pred EEEEe-CCeeeEeeeHHHHHHHHH
Q 023512 178 AVVTV-ENKPRGILTSKDILMRVI 200 (281)
Q Consensus 178 ~~V~~-~~~~~Givt~~di~~~~~ 200 (281)
+||++ +..++|+||++|+++.+-
T Consensus 283 ~PVv~~n~~llGiitR~dvlk~lq 306 (432)
T COG4109 283 LPVVDSNNTLLGIITRQDVLKSLQ 306 (432)
T ss_pred eeEEcCCceEEEEEEHHHHHHHHH
Confidence 99999 899999999999996554
No 129
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.43 E-value=2.1e-12 Score=93.21 Aligned_cols=103 Identities=14% Similarity=0.249 Sum_probs=87.5
Q ss_pred CCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCC
Q 023512 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (281)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (281)
.++.++++++++.+|++.|.+++.+.+||+++ ++++|+++..+++...
T Consensus 2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~------------------------------- 50 (108)
T cd04596 2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKD------------------------------- 50 (108)
T ss_pred CccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhccc-------------------------------
Confidence 36788999999999999999999999999985 9999999999985320
Q ss_pred hhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (281)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~ 196 (281)
...++.++|. .++.++++++++.++++.|.+++...+||++ +|+++|++|..|++
T Consensus 51 ------------~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~ 106 (108)
T cd04596 51 ------------PDTTIEKVMT--KNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVL 106 (108)
T ss_pred ------------ccccHHHHhc--CCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhh
Confidence 0112444554 5688999999999999999999999999998 88999999999996
No 130
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.43 E-value=4.5e-12 Score=90.84 Aligned_cols=99 Identities=20% Similarity=0.177 Sum_probs=84.8
Q ss_pred eEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCChhhH
Q 023512 52 TFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTF 131 (281)
Q Consensus 52 ~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (281)
+++++++++.++++.|.+.++..+||+++++++|+++..++....
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~----------------------------------- 48 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDYNKFLGAVYLKDIENAT----------------------------------- 48 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHHhhhc-----------------------------------
Confidence 468999999999999999999999999889999999999986420
Q ss_pred HHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHH
Q 023512 132 IETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (281)
Q Consensus 132 ~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~ 196 (281)
..++.++|. .++.+++++.++.++++.|.+++...+||+++|+++|++|..|++
T Consensus 49 ---------~~~~~~~~~--~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~~~~iGvit~~dl~ 102 (104)
T cd04594 49 ---------YGDVVDYIV--RGIPYVRLTSTAEEAWEVMMKNKTRWCPVVDDGKFKGIVTLDSIL 102 (104)
T ss_pred ---------ccchhhhhh--cCCcEEcCCCCHHHHHHHHHHcCcceEEEEECCEEEEEEEHHHhh
Confidence 001334444 567899999999999999999999999999999999999999986
No 131
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=2.4e-12 Score=95.61 Aligned_cols=121 Identities=21% Similarity=0.274 Sum_probs=88.2
Q ss_pred CCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (281)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (281)
.+.++++++++.+|++.|.++++..+||+++ ++++|+++..|+...............
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~--------------------- 60 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLLLYRT--------------------- 60 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcchhhcccc---------------------
Confidence 5678999999999999999999999999986 899999999998764211100000000
Q ss_pred hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (281)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~ 196 (281)
..+. .+.. ......+.+. .++.++++++++.++++.|.+++.+++||++ +++++|+||..|++
T Consensus 61 ~~~~-~~~~--~~~~~~~~~~--~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil 124 (126)
T cd04642 61 ITFK-ELSE--KFTDSDGVKS--RPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDII 124 (126)
T ss_pred hhhh-hhhh--hccccccccc--CCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHh
Confidence 0000 0000 0011223343 6788999999999999999999999999999 68999999999996
No 132
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=1.7e-12 Score=96.13 Aligned_cols=120 Identities=28% Similarity=0.377 Sum_probs=90.9
Q ss_pred CCCeEecCCchHHHHHHHhHhCCCcEeeEeeC--CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCC
Q 023512 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSIS 126 (281)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~--~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (281)
+++.+++++.++.+|+++|.+++...+||+++ ++++|+++..+++..............
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~------------------- 61 (125)
T cd04631 1 KDVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKT------------------- 61 (125)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccc-------------------
Confidence 35778999999999999999999999999985 899999999999764321100000000
Q ss_pred ChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512 127 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (281)
Q Consensus 127 ~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~ 196 (281)
. ........++.++|. .++.++++++++.++++.|.+.+.+++||++ +|++.|+||..|++
T Consensus 62 --~-----~~~~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~ 123 (125)
T cd04631 62 --G-----NGLEAINEPVRSIMT--RNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLL 123 (125)
T ss_pred --c-----ccchhhhcCHHHHhc--CCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhh
Confidence 0 000011223555665 6799999999999999999999999999998 69999999999996
No 133
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.43 E-value=4e-12 Score=91.26 Aligned_cols=102 Identities=20% Similarity=0.209 Sum_probs=86.2
Q ss_pred CCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCC
Q 023512 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (281)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (281)
+++++++++.++.+|++.|.+++...+||+++ |+++|+++..|++....
T Consensus 1 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~~------------------------------ 50 (106)
T cd04582 1 TEPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARASG------------------------------ 50 (106)
T ss_pred CCCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhcc------------------------------
Confidence 36778999999999999999999999999984 99999999999864200
Q ss_pred hhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (281)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~ 196 (281)
.++.++|. +++.++.+++++.++++.|.+++...+||++ +|+++|++|.++++
T Consensus 51 --------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~ 104 (106)
T cd04582 51 --------------GCCGDHAE--PFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIA 104 (106)
T ss_pred --------------cchhhhcc--cCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhh
Confidence 01334444 5577899999999999999999999999999 78999999999996
No 134
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=3.2e-12 Score=92.68 Aligned_cols=108 Identities=21% Similarity=0.254 Sum_probs=89.1
Q ss_pred CCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCC
Q 023512 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (281)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (281)
+++.++++++++.+|.+.|.+.++..+||+++ ++++|+++..+++......
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~---------------------------- 52 (112)
T cd04624 1 RPVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAG---------------------------- 52 (112)
T ss_pred CCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhcc----------------------------
Confidence 35778999999999999999999999999986 9999999999997642210
Q ss_pred hhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (281)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~ 196 (281)
......+.++|. .++.++.+++++.++++.|.+++...+||++ +|++.|++|..|++
T Consensus 53 ----------~~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~ 110 (112)
T cd04624 53 ----------IDLDTPVSEIMT--RDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLV 110 (112)
T ss_pred ----------CCCccCHHHhcc--CCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhc
Confidence 001123445555 6688999999999999999988899999998 69999999999996
No 135
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.43 E-value=2.5e-12 Score=93.55 Aligned_cols=107 Identities=17% Similarity=0.201 Sum_probs=88.2
Q ss_pred CCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (281)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (281)
++.++++++++.++++.|.+.+...+||+++ ++++|+++..|++......
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~----------------------------- 53 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKG----------------------------- 53 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcC-----------------------------
Confidence 4678899999999999999999999999985 8999999999986532110
Q ss_pred hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (281)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~ 196 (281)
.....++.++|. .++.++++++++.++++.|.+.+.+.+||++ +|+++|++|.+|++
T Consensus 54 ---------~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~ 111 (113)
T cd04607 54 ---------LSLDDPVSEVMN--RNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLL 111 (113)
T ss_pred ---------CCcCCCHHHhhc--CCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhc
Confidence 001123555564 6688999999999999999999999999998 88999999999996
No 136
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.43 E-value=4e-12 Score=91.93 Aligned_cols=108 Identities=23% Similarity=0.286 Sum_probs=88.9
Q ss_pred CCCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (281)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (281)
+++.++++++++.++++.|.+.+++++||+++++++|+++..|++.......
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~---------------------------- 52 (111)
T cd04612 1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVDDGRLVGIVTLADIRRVPAEGR---------------------------- 52 (111)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcceEeeCCeEEEEEEHHHHHHHHhcCc----------------------------
Confidence 4678899999999999999999999999998899999999999875321100
Q ss_pred hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (281)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~ 196 (281)
.....+.++|. .++.++.+++++.++++.|.+.+.+++||++ +|++.|++|..|++
T Consensus 53 ----------~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~ 109 (111)
T cd04612 53 ----------EATVLVGDVMT--RDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLL 109 (111)
T ss_pred ----------ccccCHHHhcc--CCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhh
Confidence 00012344454 6789999999999999999999999999999 69999999999996
No 137
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=3.5e-12 Score=91.62 Aligned_cols=103 Identities=27% Similarity=0.387 Sum_probs=89.6
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHH
Q 023512 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 231 (281)
+..++.++.++.+++..|.+.+++++||++ ++++.|+++..+++. .. ...++.++|...+.++++++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~-~~------~~~~~~~~~~~~~~~v~~~~~l~~~ 74 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLR-NP------EEEQLALLMTRDPPTVSPDDDVKEA 74 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHh-cc------ccchHHHHhcCCCceECCCCCHHHH
Confidence 367788999999999999988889999998 689999999999962 11 1235777888889999999999999
Q ss_pred HHHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (281)
Q Consensus 232 ~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~ 263 (281)
++.|.+++.+++||++ +|+++|++|..|+++
T Consensus 75 ~~~~~~~~~~~~~Vvd-~~~~~G~it~~d~~~ 105 (106)
T cd04638 75 AKLMVENNIRRVPVVD-DGKLVGIVTVADIVR 105 (106)
T ss_pred HHHHHHcCCCEEEEEE-CCEEEEEEEHHHhhc
Confidence 9999999999999998 589999999999875
No 138
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.43 E-value=6.2e-12 Score=91.06 Aligned_cols=108 Identities=19% Similarity=0.209 Sum_probs=89.0
Q ss_pred CCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCChh
Q 023512 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 129 (281)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (281)
+++++++++++.++++.|.+++...+||+++++++|+++..+++......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~~~~------------------------------ 51 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDGDPRLGIVTRTDLLDAVLLD------------------------------ 51 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecCCeEEEEEEHHHHHHHHHcC------------------------------
Confidence 56788999999999999999999999999888999999999987532100
Q ss_pred hHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHH
Q 023512 130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (281)
Q Consensus 130 ~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~ 196 (281)
......++.++|. .++..+++++++.++++.|.+++...+||+++|+++|++|..|++
T Consensus 52 -------~~~~~~~i~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~dl~ 109 (111)
T cd04589 52 -------GLPSSTPVGEIAT--FPLITVDPDDFLFNALLLMTRHRIHRVVVREGGEVVGVLEQTDLL 109 (111)
T ss_pred -------CCCCCCCHHHHhC--CCcEEECCCCcHHHHHHHHHHhCccEEEEeeCCEEEEEEEhHHhh
Confidence 0011223555564 678899999999999999999999999999989999999999996
No 139
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.43 E-value=2.2e-12 Score=116.59 Aligned_cols=122 Identities=19% Similarity=0.214 Sum_probs=101.6
Q ss_pred hhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCcccccccccc
Q 023512 138 RMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT 216 (281)
Q Consensus 138 ~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~ 216 (281)
.+...++.++|. +++.++.+++++.++++.|.+.+.+.+||++ +++++|+||..|+++.+..... ....++.++|.
T Consensus 331 ~l~~~~v~~im~--~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~-~~~~~v~~im~ 407 (454)
T TIGR01137 331 VLKNATVKDLHL--PAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGKA-NPDDAVSKVMS 407 (454)
T ss_pred HhccCCHHHhCc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccCC-CcCCCHHHhcC
Confidence 456677889997 7799999999999999999988999999998 7899999999999754443222 22347889999
Q ss_pred CCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhh
Q 023512 217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 265 (281)
Q Consensus 217 ~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~ 265 (281)
+++.++++++++.++++.|.+++ .|+|+++|+++|+||..|++++.
T Consensus 408 ~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 408 KKFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred CCCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence 88999999999999999998864 34455579999999999999874
No 140
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.43 E-value=5.6e-12 Score=91.43 Aligned_cols=110 Identities=22% Similarity=0.298 Sum_probs=89.5
Q ss_pred CCCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (281)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (281)
+++.++++++++.++++.|.+++.+.+||+++++++|+++..+++.......
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~---------------------------- 52 (112)
T cd04802 1 KNVITVDPDTTVYEAANIMTENNIGRLIVVDNEKPVGIITERDLVKKVVSRN---------------------------- 52 (112)
T ss_pred CCcEEECCCCCHHHHHHHHHHCCCCEEEEEECCEEEEEEEHHHHHHHHhhcc----------------------------
Confidence 3567899999999999999999999999999889999999999976422100
Q ss_pred hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHH
Q 023512 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (281)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~ 196 (281)
......++.++|. .++.++++++++.++++.|.+.+.+++||+++++++|+++..|++
T Consensus 53 --------~~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvi~~~di~ 110 (112)
T cd04802 53 --------LKPREVPVGEVMS--TPLITIDPNASLNEAAKLMAKHGIKRLPVVDDDELVGIVTTTDIV 110 (112)
T ss_pred --------CCcccCCHHHhcC--CCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCCEEEEEEEhhhhh
Confidence 0001123455664 668899999999999999999999999999966999999999996
No 141
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.42 E-value=1.5e-12 Score=120.74 Aligned_cols=124 Identities=12% Similarity=0.147 Sum_probs=102.2
Q ss_pred CCCcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHh
Q 023512 37 NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE 115 (281)
Q Consensus 37 ~~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~ 115 (281)
.+...+++|+|++++.++++++++.++.+.|.+++.+.+||+|+ ++++|+++.+|+.+......
T Consensus 443 ~L~~~~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~--------------- 507 (574)
T PRK01862 443 RLRTTQMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKR--------------- 507 (574)
T ss_pred HHhhCcHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhccc---------------
Confidence 34567999999999999999999999999999999999999986 89999999999875321100
Q ss_pred hHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-C--CeeeEeeeH
Q 023512 116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E--NKPRGILTS 192 (281)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~--~~~~Givt~ 192 (281)
.....++.++|. +++.++++++++.++++.|.+++.+.+||+| + ++++|+||+
T Consensus 508 ----------------------~~~~~~v~dim~--~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~ 563 (574)
T PRK01862 508 ----------------------DTTDKTAADYAH--TPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYK 563 (574)
T ss_pred ----------------------ccccchHHHhcc--CCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEH
Confidence 001123566665 6788999999999999999999999999998 4 489999999
Q ss_pred HHHHHHH
Q 023512 193 KDILMRV 199 (281)
Q Consensus 193 ~di~~~~ 199 (281)
+|+++.+
T Consensus 564 ~DIl~~l 570 (574)
T PRK01862 564 TSLLDAY 570 (574)
T ss_pred HHHHHHH
Confidence 9998544
No 142
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=1.4e-12 Score=94.56 Aligned_cols=92 Identities=21% Similarity=0.376 Sum_probs=77.4
Q ss_pred CCCCccEEEEEcCCCcEEEEEehHHHHHHHHHhcCCCCcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeCC
Q 023512 2 AARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENG 81 (281)
Q Consensus 2 ~~~~~~~~~v~~~~~~~~Gi~t~~d~~~~~~~~~~~~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~ 81 (281)
.+++...++|.++ ++++|+++..|+++.+...+......+++++|.+++.++++++++.+|++.|.+++...+||++++
T Consensus 20 ~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~~ 98 (112)
T cd04625 20 AEQDLGSLVVMER-GELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLDGG 98 (112)
T ss_pred HHcCCCeEEEeeC-CEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEECC
Confidence 3456667777764 899999999999865543333344568999999999999999999999999999999999999999
Q ss_pred eEEEEEehHHHHH
Q 023512 82 EVIALLDIAKCLY 94 (281)
Q Consensus 82 ~~vGvi~~~dll~ 94 (281)
+++|+++..|++.
T Consensus 99 ~~~Gvvt~~dl~~ 111 (112)
T cd04625 99 TLLGVISFHDVAK 111 (112)
T ss_pred EEEEEEEHHHhhc
Confidence 9999999999864
No 143
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.42 E-value=1.5e-11 Score=111.06 Aligned_cols=163 Identities=9% Similarity=0.013 Sum_probs=115.6
Q ss_pred cccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC----CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhh
Q 023512 44 SKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK 119 (281)
Q Consensus 44 ~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~----~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (281)
+..|.++++++++++|+.+|+++|.++++..+||+|+ ++++|+|+..|+....
T Consensus 103 ~~gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~----------------------- 159 (505)
T PLN02274 103 RVGFVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN----------------------- 159 (505)
T ss_pred cccccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc-----------------------
Confidence 3447789999999999999999999999999999985 6999999999984310
Q ss_pred hhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHH
Q 023512 120 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMR 198 (281)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~ 198 (281)
....++.++|++..++.++++++++.++++.|.+++...+||++ +++++|+||.+|+++.
T Consensus 160 -------------------~~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~ 220 (505)
T PLN02274 160 -------------------DRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRV 220 (505)
T ss_pred -------------------ccCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHH
Confidence 11235778887434488999999999999999999999999998 8999999999999854
Q ss_pred HHhcCCCCccccccccccCCC--eeeeCCCCHHHHHHHhHhCCCCeeeEecCCCc
Q 023512 199 VISQNLPADSTLVEKVMTPNP--ECATIDTPIVDALHIMHDGKFLHLPVVDRDGD 251 (281)
Q Consensus 199 ~~~~~~~~~~~~v~~~~~~~~--~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~ 251 (281)
....... .+..|-..+-. ..+.....-.+-.+.+.+.+.+.+.+=-.+|.
T Consensus 221 ~~~p~~~---~~~~d~~~~l~vgaavg~~~~~~~r~~~l~~ag~d~i~iD~~~g~ 272 (505)
T PLN02274 221 KGYPKLG---KPSVGKDGKLLVGAAIGTRESDKERLEHLVKAGVDVVVLDSSQGD 272 (505)
T ss_pred hhCcCcc---ccccCCCCCEEEEEEEcCCccHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 4332210 01111111111 11222223356666666777777644223343
No 144
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.42 E-value=5.2e-12 Score=113.87 Aligned_cols=115 Identities=12% Similarity=0.134 Sum_probs=96.7
Q ss_pred ccccccc---CCCeEecCCchHHHHHHHhHhCCCcEeeEeeC----CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHH
Q 023512 42 PVSKVMT---RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV 114 (281)
Q Consensus 42 ~v~dim~---~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~----~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~ 114 (281)
+|+++|. ..++++++++|+.+|++.|.++++..+||+|+ ++++|+|+..|+...
T Consensus 95 kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~------------------- 155 (502)
T PRK07107 95 RVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRIS------------------- 155 (502)
T ss_pred HHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhcc-------------------
Confidence 4566664 34579999999999999999999999999985 799999999997421
Q ss_pred hhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHH
Q 023512 115 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSK 193 (281)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~ 193 (281)
......++.++|++.+++.++++++++.+|++.|.+++...+||+| +++++|+||.+
T Consensus 156 ----------------------~~~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~ 213 (502)
T PRK07107 156 ----------------------RMSLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRK 213 (502)
T ss_pred ----------------------ccCCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhH
Confidence 0012345788888545789999999999999999999999999999 79999999999
Q ss_pred HHHH
Q 023512 194 DILM 197 (281)
Q Consensus 194 di~~ 197 (281)
|+++
T Consensus 214 Dilk 217 (502)
T PRK07107 214 DYDS 217 (502)
T ss_pred HHHh
Confidence 9984
No 145
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.41 E-value=6.7e-12 Score=91.52 Aligned_cols=109 Identities=19% Similarity=0.281 Sum_probs=88.7
Q ss_pred CCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCC
Q 023512 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (281)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (281)
+++.++++++++.++.+.|.+.++..+||+++ ++++|+++..|+........
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~--------------------------- 53 (115)
T cd04593 1 PPPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADE--------------------------- 53 (115)
T ss_pred CCCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhccc---------------------------
Confidence 35678899999999999999999999999986 99999999999875421100
Q ss_pred hhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-C--CeeeEeeeHHHHH
Q 023512 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E--NKPRGILTSKDIL 196 (281)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~--~~~~Givt~~di~ 196 (281)
.....++.++|. .++.++.+++++.++++.|.+++...+||++ + |+++|+||.+|++
T Consensus 54 ----------~~~~~~~~~~~~--~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~ 113 (115)
T cd04593 54 ----------AGEPSAVDEVAT--PPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVL 113 (115)
T ss_pred ----------ccccccHHHhcc--CCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhh
Confidence 000112444554 6788999999999999999999999999998 5 7999999999996
No 146
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.41 E-value=5e-12 Score=94.69 Aligned_cols=128 Identities=18% Similarity=0.210 Sum_probs=94.4
Q ss_pred CCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (281)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (281)
++.++++++++.++++.|.+.+++++||+++ ++++|+++..+++............ .+......
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~~---------------~~~~~~~~ 66 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYV---------------TLLYSVIF 66 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCcccc---------------cccccccc
Confidence 5678999999999999999999999999985 8999999999997653211000000 00000000
Q ss_pred hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHH
Q 023512 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (281)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~ 196 (281)
.. +...+.....++.++|. +++..+++++++.++++.|.+.+.+.+||+++|+++|++|..|++
T Consensus 67 ~~--~~~~~~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~iGvit~~dl~ 130 (132)
T cd04636 67 LD--ESKIKKLLGKKVEEIMT--KKVITVDEDTTIEDVARIMSKKNIKRLPVVDDGKLVGIISRGDII 130 (132)
T ss_pred cc--hHHHHHHcCCCHHHhcc--CCceEECCCCcHHHHHHHHHHCCCCeeEEEECCEEEEEEEHHHhh
Confidence 00 11222333446777776 678899999999999999999999999999989999999999996
No 147
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.41 E-value=6e-12 Score=91.37 Aligned_cols=110 Identities=24% Similarity=0.295 Sum_probs=89.2
Q ss_pred CCCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (281)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (281)
+++.++++++++.+|++.|.+++++.+||+++++++|+++..+++...... +
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~i~~~~l~~~~~~~----------------~------------ 52 (113)
T cd04622 1 RDVVTVSPDDTIREAARLMREHDVGALPVCENDRLVGIVTDRDIVVRAVAE----------------G------------ 52 (113)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEhHHHHHHHhhc----------------c------------
Confidence 367889999999999999999999999999999999999999986321100 0
Q ss_pred hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (281)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~ 196 (281)
......++.++|. ..+.++.+++++.++++.|...+.+++||++ +|+++|++|..|++
T Consensus 53 --------~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~ 111 (113)
T cd04622 53 --------RDPDTTTVGDVMT--RGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLA 111 (113)
T ss_pred --------CCcccCCHHHhcc--CCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhh
Confidence 0001112556665 6688899999999999999999999999998 69999999999996
No 148
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.40 E-value=9.7e-12 Score=112.29 Aligned_cols=114 Identities=10% Similarity=0.161 Sum_probs=98.4
Q ss_pred ccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC----CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHh
Q 023512 43 VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE 118 (281)
Q Consensus 43 v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~----~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (281)
.++.|.++++++++++++.+|+++|.+++++.+||+++ ++++|+++..|+...
T Consensus 98 ~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~----------------------- 154 (495)
T PTZ00314 98 FENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFV----------------------- 154 (495)
T ss_pred cccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhc-----------------------
Confidence 56778889999999999999999999999999999985 699999999998521
Q ss_pred hhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHH
Q 023512 119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM 197 (281)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~ 197 (281)
.....++.++|++..++.++++++++.++++.|.+++...+||+| +++++|+||.+|+++
T Consensus 155 -------------------~~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~ 215 (495)
T PTZ00314 155 -------------------KDKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKK 215 (495)
T ss_pred -------------------ccCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhh
Confidence 001235778887434899999999999999999999999999999 899999999999974
Q ss_pred H
Q 023512 198 R 198 (281)
Q Consensus 198 ~ 198 (281)
.
T Consensus 216 ~ 216 (495)
T PTZ00314 216 N 216 (495)
T ss_pred c
Confidence 3
No 149
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=5.4e-12 Score=92.06 Aligned_cols=111 Identities=16% Similarity=0.267 Sum_probs=86.9
Q ss_pred CCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (281)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (281)
+++++++++++.++++.|.+++++.+||+++ ++++|+++..+++.........
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~-------------------------- 55 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENL-------------------------- 55 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCch--------------------------
Confidence 5678999999999999999999999999986 8999999999997643211000
Q ss_pred hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (281)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~ 196 (281)
+ . ..+...++.++|. .++.++++++++.++++.|.+.+ .+||++ +|+++|++|..|++
T Consensus 56 -~----~-~~~~~~~v~~~~~--~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil 114 (116)
T cd04643 56 -D----L-ERLVDLKVIDVMN--TDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREIL 114 (116)
T ss_pred -h----H-HHHhCCcHHHHhc--CCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhh
Confidence 0 0 0011234566665 67899999999999999998754 589998 79999999999996
No 150
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=5.3e-12 Score=93.03 Aligned_cols=117 Identities=23% Similarity=0.356 Sum_probs=90.7
Q ss_pred CCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (281)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (281)
++.++.+++++.++++.|.+.+++.+||+++ ++++|+++..+++.......... +
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~------------------~------ 57 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDN------------------G------ 57 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccc------------------c------
Confidence 5778999999999999999999999999986 99999999999976432110000 0
Q ss_pred hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (281)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~ 196 (281)
... .+.....++.++|. .++.++++++++.++++.|.+.+.+++||++ +|+++|++|..|++
T Consensus 58 ~~~----~~~~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~ 120 (122)
T cd04803 58 EES----LTKERDVPVAEVMK--TDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFL 120 (122)
T ss_pred ccc----cccccCcCHHHhhC--CCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhh
Confidence 000 00112234555665 6788999999999999999999999999999 58999999999996
No 151
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.40 E-value=9.1e-12 Score=111.73 Aligned_cols=114 Identities=20% Similarity=0.307 Sum_probs=97.2
Q ss_pred cccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC----CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhH
Q 023512 42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV 117 (281)
Q Consensus 42 ~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~----~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~ 117 (281)
+.++.|.+++.++++++++.+++++|.+++++.+||+++ ++++|+++.+|++...
T Consensus 81 ~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~--------------------- 139 (450)
T TIGR01302 81 RAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVK--------------------- 139 (450)
T ss_pred cccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhh---------------------
Confidence 456778889999999999999999999999999999985 4999999999985320
Q ss_pred hhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512 118 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (281)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~ 196 (281)
....++.++|.+ .++.++++++++.++++.|.+++.+.+||+| +|.++|+||.+|++
T Consensus 140 ---------------------~~~~~V~dvm~~-~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl 197 (450)
T TIGR01302 140 ---------------------DKGKPVSEVMTR-EEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIV 197 (450)
T ss_pred ---------------------cCCCCHHHhhCC-CCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhh
Confidence 011245666652 3799999999999999999999999999999 89999999999998
Q ss_pred HH
Q 023512 197 MR 198 (281)
Q Consensus 197 ~~ 198 (281)
+.
T Consensus 198 ~~ 199 (450)
T TIGR01302 198 KR 199 (450)
T ss_pred hc
Confidence 54
No 152
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.39 E-value=7.8e-12 Score=91.14 Aligned_cols=108 Identities=18% Similarity=0.232 Sum_probs=85.5
Q ss_pred CCeEecCCchHHHHHHHhHhCC-CcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512 50 NPTFVLSDTLAVEALQKMVQGK-FRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (281)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~-~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (281)
++.+++++.++.++++.|.+++ ...+||.++++++|+++..|++.......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~---------------------------- 53 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEKGRLLGIFTERDIVRLTAIGK---------------------------- 53 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCCCcEEEEEeHHHHHHHHhcCC----------------------------
Confidence 5678899999999999998888 66778878899999999999975421100
Q ss_pred hhHHHHHHHhhcCCCccccccCCCceeEeCCC--CcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPT--DTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (281)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~--~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~ 196 (281)
.....++.++|. .++.++.++ +++.++++.|.+++...+||++ +|+++|++|.+|++
T Consensus 54 ---------~~~~~~i~~~~~--~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~ 113 (115)
T cd04620 54 ---------DLSDLPIGEVMT--QPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIR 113 (115)
T ss_pred ---------CccccCHHHhcC--CCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhh
Confidence 001123455564 567778776 7899999999999999999999 79999999999996
No 153
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.39 E-value=1e-11 Score=89.25 Aligned_cols=103 Identities=21% Similarity=0.348 Sum_probs=87.0
Q ss_pred CCCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (281)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (281)
+++++++++.++.++++.|.+.+...+||+++++++|+++..+++...
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~g~v~~~~l~~~~-------------------------------- 49 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDNGKVVGIVSARDLLGKD-------------------------------- 49 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhhccC--------------------------------
Confidence 567889999999999999998888899999889999999999986310
Q ss_pred hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (281)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~ 196 (281)
....+.++|. .++.++.+++++.++++.|.+++..++||++ +|+++|+++..|++
T Consensus 50 -----------~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~ 105 (107)
T cd04610 50 -----------PDETVEEIMS--KDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVI 105 (107)
T ss_pred -----------ccccHHHhCC--CCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhh
Confidence 0012445554 5688899999999999999999999999998 78999999999996
No 154
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.39 E-value=2e-12 Score=95.88 Aligned_cols=110 Identities=22% Similarity=0.330 Sum_probs=88.6
Q ss_pred CCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCC
Q 023512 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (281)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (281)
+++.++++++++.++++.|.++++..+||+++ ++++|+++..+++.......
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~--------------------------- 54 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGK--------------------------- 54 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhc---------------------------
Confidence 56889999999999999999999999999986 89999999999876422110
Q ss_pred hhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHH---------cCccEEEEEe-CCeeeEeeeHHHHHH
Q 023512 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLE---------LRLSSAVVTV-ENKPRGILTSKDILM 197 (281)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~---------~~~~~~~V~~-~~~~~Givt~~di~~ 197 (281)
.....++.++|. .++.++.+++++.++.+.+.. .+...+||++ +|+++|+||.+|++.
T Consensus 55 ----------~~~~~~v~~im~--~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~ 122 (124)
T cd04608 55 ----------VQPSDPVSKALY--KQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLS 122 (124)
T ss_pred ----------cCCCCcHHHHhh--ccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhh
Confidence 112335788887 789999999999999996532 2566677777 789999999999973
No 155
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=99.38 E-value=6.2e-13 Score=112.34 Aligned_cols=161 Identities=27% Similarity=0.301 Sum_probs=123.1
Q ss_pred HHHHHHHhhhhHHHHHhhHhhhhCCCCCChhhHHHHHHH-hhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccE
Q 023512 99 RMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRE-RMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSS 177 (281)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~ 177 (281)
.|+..++...++.+++.+..-....++.|+.. ...++. +.. -..++ .++..++|+.++.++++....+++..
T Consensus 69 pMDTVtes~MAiaMAl~ggIg~IHhNctpe~Q-A~~v~~vK~~---~~g~~---~~p~v~sp~~tvg~v~~~k~~~gF~g 141 (503)
T KOG2550|consen 69 PMDTVTESEMAIAMALLGGIGFIHHNCTPEDQ-ADMVRRVKNY---ENGFI---NNPIVISPTTTVGEVKEAKEKHGFSG 141 (503)
T ss_pred CCcccchhHHHHHHHhcCCceeeecCCCHHHH-HHHHHHHHHh---hcccc---cCCcccCCcccchhhhhhcccccccc
Confidence 35555666677777776655444444443322 222221 111 11122 56889999999999999999999999
Q ss_pred EEEEe----CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEE
Q 023512 178 AVVTV----ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 253 (281)
Q Consensus 178 ~~V~~----~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~ 253 (281)
+|+++ .++++|+||.+|+ .++.+ ...++.++|+..+++.+.+.++.++.+++.+++...+||||++|+++
T Consensus 142 ~pvTe~g~~~~KLvG~vtsrdi--~f~~~----~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelv 215 (503)
T KOG2550|consen 142 IPVTEDGKRGSKLVGIITSRDI--QFLED----NSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELV 215 (503)
T ss_pred cccccCCcccceeEEEEehhhh--hhhhc----ccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCcee
Confidence 99997 5789999999999 44422 24589999999999999999999999999999999999999999999
Q ss_pred EEEEhhhHHHhhhchHHHH
Q 023512 254 DVVDVIHITHAAVATEILL 272 (281)
Q Consensus 254 Gvis~~di~~~~~~~~~~~ 272 (281)
.+++++||.+...+++...
T Consensus 216 a~~~rtDl~k~~~yPlask 234 (503)
T KOG2550|consen 216 AMLSRTDLMKNRDYPLASK 234 (503)
T ss_pred eeeehhhhhhhcCCCcccc
Confidence 9999999999877765443
No 156
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.38 E-value=2.3e-12 Score=93.59 Aligned_cols=93 Identities=53% Similarity=0.763 Sum_probs=79.4
Q ss_pred CCCCCccEEEEEcCCCcEEEEEehHHHHHHHHHhcCCCCcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC
Q 023512 1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN 80 (281)
Q Consensus 1 m~~~~~~~~~v~~~~~~~~Gi~t~~d~~~~~~~~~~~~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~ 80 (281)
|.+++.+.++|+++ ++++|+++..|+++.....+....+.++.++|.+++.++++++++.++++.|.+++..++||+++
T Consensus 19 ~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~ 97 (113)
T cd04587 19 MREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDK 97 (113)
T ss_pred HHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECC
Confidence 34567788999997 99999999999986555444333336899999999999999999999999999999999999986
Q ss_pred -CeEEEEEehHHHHH
Q 023512 81 -GEVIALLDIAKCLY 94 (281)
Q Consensus 81 -~~~vGvi~~~dll~ 94 (281)
++++|+++..|++.
T Consensus 98 ~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 98 SGQVVGLLDVTKLTH 112 (113)
T ss_pred CCCEEEEEEHHHhcc
Confidence 99999999999863
No 157
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=6.9e-12 Score=92.38 Aligned_cols=118 Identities=23% Similarity=0.396 Sum_probs=90.2
Q ss_pred CCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCC
Q 023512 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (281)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (281)
+++.++++++++.++++.|.+++++.+||+++ ++++|+++..+++..........
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~------------------------ 56 (122)
T cd04635 1 REPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVE------------------------ 56 (122)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhcccccccc------------------------
Confidence 35788999999999999999999999999986 99999999999875311000000
Q ss_pred hhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (281)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~ 196 (281)
... ........++.++|. .++.++++++++.++++.|.+.+.+++||++ +|++.|++|..|++
T Consensus 57 -~~~---~~~~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~ 120 (122)
T cd04635 57 -DQQ---RTQTKASPTVEKIMS--TPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVL 120 (122)
T ss_pred -chh---hhhhhccCcHHHHhc--CCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhh
Confidence 000 000011223555564 6789999999999999999999999999998 78999999999996
No 158
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=1.7e-11 Score=91.25 Aligned_cols=121 Identities=29% Similarity=0.364 Sum_probs=90.1
Q ss_pred CCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (281)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (281)
++.++.+++++.+|+++|.+.+.+.+||+++ ++++|+++..++........... ...
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~--~~~-------------------- 59 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKA--RTG-------------------- 59 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhc--chh--------------------
Confidence 5678899999999999999999999999986 89999999999975432110000 000
Q ss_pred hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe---CCeeeEeeeHHHHH
Q 023512 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDIL 196 (281)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~---~~~~~Givt~~di~ 196 (281)
.... ........++.++|. .++++++++.++.++++.|.+.+...+||++ +|+++|+||..|++
T Consensus 60 -~~~~-~~~~~~~~~~~~~~~--~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~ 126 (128)
T cd04632 60 -DRSG-EKERMLDLPVYDAMS--SPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVL 126 (128)
T ss_pred -hhhh-hhhhhccCcHHHHhc--CCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhh
Confidence 0000 000112234666775 6789999999999999999998889999985 48999999999986
No 159
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.37 E-value=1.4e-11 Score=89.21 Aligned_cols=105 Identities=16% Similarity=0.204 Sum_probs=85.8
Q ss_pred CCeEecCCchHHHHHHHhHhCCCcEeeEee-C-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCC
Q 023512 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (281)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d-~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (281)
++.++++++++.+|.+.|.+.++..+||++ + ++++|+++..+++.......
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~--------------------------- 54 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGE--------------------------- 54 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCC---------------------------
Confidence 567899999999999999999999999997 4 89999999999976421100
Q ss_pred hhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (281)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~ 196 (281)
....+.+++ .++.++.+++++.++++.|.+++.+++||++ +|+++|++|..|++
T Consensus 55 ------------~~~~~~~~~---~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~ 109 (111)
T cd04590 55 ------------EDLDLRDLL---RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDIL 109 (111)
T ss_pred ------------CcCCHHHHh---cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhh
Confidence 001122333 4578899999999999999999999999999 69999999999996
No 160
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.37 E-value=1.2e-11 Score=90.20 Aligned_cols=104 Identities=15% Similarity=0.254 Sum_probs=84.1
Q ss_pred CCCeEecCCchHHHHHHHhHhCCCcEeeEeeC----CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCC
Q 023512 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTS 124 (281)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~----~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (281)
.++.++.+++++.++++.|.+++...+||+|+ ++++|+++..|++...
T Consensus 2 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~---------------------------- 53 (114)
T cd04602 2 TDPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLT---------------------------- 53 (114)
T ss_pred CCCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhh----------------------------
Confidence 35678899999999999999999999999984 8999999999875320
Q ss_pred CCChhhHHHHHHHhhcCCCccccccCCCceeEe--CCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512 125 ISGPNTFIETLRERMFRPSLSTIIPEKSKVVTI--SPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (281)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v--~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~ 196 (281)
....++.++|. .++..+ ++++++.++++.|.+++...+||++ +|+++|+||.+|++
T Consensus 54 --------------~~~~~v~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~ 112 (114)
T cd04602 54 --------------DSETPLSEVMT--PREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLK 112 (114)
T ss_pred --------------ccCCCHHHhcC--CCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhh
Confidence 00112455665 445555 4499999999999999999999998 79999999999996
No 161
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.37 E-value=1.1e-11 Score=89.01 Aligned_cols=97 Identities=18% Similarity=0.222 Sum_probs=84.8
Q ss_pred CCeEecCCchHHHHHHHhHhCCCcEeeEeeC----CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCC
Q 023512 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSI 125 (281)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~----~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (281)
...++.+++++.++.+.|.+.++..+||+++ ++++|+++..++......
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~--------------------------- 55 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN--------------------------- 55 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH---------------------------
Confidence 4567899999999999999999999999986 899999999998654110
Q ss_pred CChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHH
Q 023512 126 SGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (281)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~ 196 (281)
+|. .++.++++++++.++++.|.+++.+++||+++|+++|++|.+|++
T Consensus 56 ---------------------~m~--~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~~~~~~Gvvt~~dl~ 103 (105)
T cd04591 56 ---------------------YID--PSPFTVSPRTSLEKVHQLFRKLGLRHLLVVDEGRLVGIITRKDLL 103 (105)
T ss_pred ---------------------hcc--CCCceECCCCcHHHHHHHHHHcCCCEEEEEECCeEEEEEEhhhhh
Confidence 333 568899999999999999999999999999999999999999996
No 162
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.37 E-value=1.7e-11 Score=90.05 Aligned_cols=117 Identities=26% Similarity=0.371 Sum_probs=90.2
Q ss_pred CCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (281)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (281)
++.++++++++.+|++.|.+.+++.+||+++ ++++|+++..++............ .
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~-----~------------------ 58 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLS-----E------------------ 58 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccch-----h------------------
Confidence 5778999999999999999999999999986 999999999998653211100000 0
Q ss_pred hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHH
Q 023512 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (281)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~ 196 (281)
... ......++.++|. .++.++++++++.++++.|.+.+..++||+++|+++|+++..|++
T Consensus 59 ----~~~-~~~~~~~v~~~~~--~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Gvv~~~di~ 119 (121)
T cd04584 59 ----HEL-YLLLKMPVKEIMT--KDVITVHPLDTVEEAALLMREHRIGCLPVVEDGRLVGIITETDLL 119 (121)
T ss_pred ----hhh-hhhcCcCHHHHhh--CCCeEECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHhh
Confidence 000 0112234556665 568899999999999999999999999999889999999999996
No 163
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.37 E-value=1e-11 Score=110.98 Aligned_cols=125 Identities=21% Similarity=0.214 Sum_probs=108.1
Q ss_pred hcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe--CCeeeEeeeHHHHHHHHHhcCCCCcccccccccc
Q 023512 139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT 216 (281)
Q Consensus 139 ~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~ 216 (281)
+...++.++|+|..++.+++.+.++.++.+.+.+++++++||++ .+.++|++..+|++.......... ......
T Consensus 203 l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~~~---~~~~~~- 278 (429)
T COG1253 203 LDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQSDL---DLRVLV- 278 (429)
T ss_pred cCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcccc---chhhcc-
Confidence 46788999999999999999999999999999999999999999 678999999999996665543211 112222
Q ss_pred CCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512 217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA 267 (281)
Q Consensus 217 ~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~ 267 (281)
++++.++++.++.++++.|.+.+.+...|+||.|...|+||..||+.....
T Consensus 279 ~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvG 329 (429)
T COG1253 279 RPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVG 329 (429)
T ss_pred cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhC
Confidence 389999999999999999999999999999999999999999999998554
No 164
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=6.4e-12 Score=93.32 Aligned_cols=114 Identities=22% Similarity=0.268 Sum_probs=84.3
Q ss_pred CCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (281)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (281)
++.++.+++++.+|++.|.+++.+.+||+++ ++++|+++..|+.......... . +
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~--~----------~------------ 57 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQ--E----------G------------ 57 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHH--H----------c------------
Confidence 4678999999999999999999999999985 8999999999987521110000 0 0
Q ss_pred hhHHHHHHHhhcCCCccccccCCCcee--Ee----CCCCcHHHHHHHHHHcCccEEEEEe-C-CeeeEeeeHHHHH
Q 023512 129 NTFIETLRERMFRPSLSTIIPEKSKVV--TI----SPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDIL 196 (281)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~--~v----~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~di~ 196 (281)
.......++.++|. +++. .+ .+++++.++++.|.+++.+.+||++ + |.++|+||.+|++
T Consensus 58 -------~~~~~~~~v~~im~--~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~ 124 (126)
T cd04640 58 -------GISRSELTVADVMT--PKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIA 124 (126)
T ss_pred -------CCCchheEHHHhcC--chhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHh
Confidence 00001123555664 3332 23 3688999999999999999999999 5 7999999999996
No 165
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.36 E-value=4.9e-12 Score=91.85 Aligned_cols=93 Identities=24% Similarity=0.421 Sum_probs=79.9
Q ss_pred CCCCCccEEEEEcCCCcEEEEEehHHHHHHHHHhcCCCCcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC
Q 023512 1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN 80 (281)
Q Consensus 1 m~~~~~~~~~v~~~~~~~~Gi~t~~d~~~~~~~~~~~~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~ 80 (281)
|.++++..+||++++++++|+++..|+.+ ...+.......++.++|.+++.++++++++.++++.|.+.+...+||+++
T Consensus 19 ~~~~~~~~~~v~~~~~~~~G~v~~~~l~~-~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~ 97 (114)
T cd04613 19 IAHSPENNFPVVDDDGRLVGIVSLDDIRE-ILFDPSLYDLVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDD 97 (114)
T ss_pred HHhCCCcceeEECCCCCEEEEEEHHHHHH-HHhcccccccEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeC
Confidence 34567889999998889999999999974 33444334347899999999999999999999999999999999999986
Q ss_pred --CeEEEEEehHHHHH
Q 023512 81 --GEVIALLDIAKCLY 94 (281)
Q Consensus 81 --~~~vGvi~~~dll~ 94 (281)
++++|+++..|++.
T Consensus 98 ~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 98 DPGKLLGILSRSDLLS 113 (114)
T ss_pred CCCEEEEEEEhHHhhc
Confidence 89999999999864
No 166
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=2e-11 Score=92.86 Aligned_cols=137 Identities=18% Similarity=0.242 Sum_probs=93.4
Q ss_pred CCCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHH-HHHHhhhhHHHHHhhHhhhhCCCCCC
Q 023512 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARME-RAAEKGKAIAAAVEGVEKHWGTSISG 127 (281)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (281)
++++++++++++.++++.|.++++..+||+++++++|+++..+++........ .......... ........
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 72 (143)
T cd04634 1 KNPITCNADDTISDAARLLRENKISGAPVLDGGKLVGIVSESDILKLLVTHDPSGNLWLPSPLE--------LIELPLRE 72 (143)
T ss_pred CCcEEecCCCCHHHHHHHHHHcCCCcceEeECCeEEEEecHHHHHHHHHhccCccccccCCcce--------eeeccchh
Confidence 35778999999999999999999999999988999999999998764322110 0000000000 00000000
Q ss_pred h---hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHH
Q 023512 128 P---NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (281)
Q Consensus 128 ~---~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~ 196 (281)
. ..+..... .....++.++|. .++.++++++++.+++..|.+.+.+.+||+++|+++|+++..|++
T Consensus 73 ~~~~~~~~~~~~-~~~~~~v~~~~~--~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~~~~~Gvvt~~dl~ 141 (143)
T cd04634 73 FINWEETKRALT-DAGKMKVRDIMT--KKVITISPDASIEDAAELMVRHKIKRLPVVEDGRLVGIVTRGDII 141 (143)
T ss_pred eeehHHHHHHHH-HHhcCCHHHHcC--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHhh
Confidence 0 00000011 112334666775 678999999999999999999999999999888999999999996
No 167
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.35 E-value=1e-11 Score=89.62 Aligned_cols=104 Identities=23% Similarity=0.359 Sum_probs=84.7
Q ss_pred CCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCC
Q 023512 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (281)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (281)
+++.++++++++.++++.|.++++..+||+++ |+++|+++..++....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~------------------------------- 50 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFET------------------------------- 50 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeecc-------------------------------
Confidence 46778999999999999999999999999986 8999999999875310
Q ss_pred hhhHHHHHHHhhcCCCccccccCCCceeEeCC-CCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISP-TDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (281)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~-~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~ 196 (281)
....++.++|. .++..+.+ ++++.++++.|.+.+.+.+||++ +|+++|++|.+|++
T Consensus 51 -----------~~~~~v~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil 108 (110)
T cd04601 51 -----------DLDKPVSEVMT--PENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIE 108 (110)
T ss_pred -----------cCCCCHHHhcc--cCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhh
Confidence 00113445554 44555565 99999999999999999999998 79999999999996
No 168
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.35 E-value=3.8e-11 Score=87.63 Aligned_cols=111 Identities=26% Similarity=0.361 Sum_probs=94.1
Q ss_pred ccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCC
Q 023512 45 KVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTS 124 (281)
Q Consensus 45 dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (281)
++|.+.+.++.++.++.+|...|.++++..+||+++++++|+++..|++.........
T Consensus 3 ~~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~~l~Giit~~di~~~~~~~~~~---------------------- 60 (117)
T COG0517 3 DIMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVGIITERDILRALAAGGKR---------------------- 60 (117)
T ss_pred ccccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHhccCCc----------------------
Confidence 4455899999999999999999999999999999988999999999998763321100
Q ss_pred CCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHH-cCccEEEEEe-CC-eeeEeeeHHHH
Q 023512 125 ISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLE-LRLSSAVVTV-EN-KPRGILTSKDI 195 (281)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~-~~~~~~~V~~-~~-~~~Givt~~di 195 (281)
..++.++|. .++.++.++.++.++.+.|.+ ++.+.+||++ ++ +++|++|..|+
T Consensus 61 ----------------~~~v~~v~~--~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di 116 (117)
T COG0517 61 ----------------LLPVKEVMT--KPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDI 116 (117)
T ss_pred ----------------cccHHHhcc--CCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHc
Confidence 004666775 579999999999999999999 6999999999 54 99999999997
No 169
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.33 E-value=8.2e-12 Score=105.12 Aligned_cols=111 Identities=15% Similarity=0.189 Sum_probs=93.8
Q ss_pred ccccccccCC-CeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHh
Q 023512 41 TPVSKVMTRN-PTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE 118 (281)
Q Consensus 41 ~~v~dim~~~-~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (281)
.+++++|.++ +.++++++++.++++.|.+.++..+||+|+ ++++|+++..|+......
T Consensus 155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~-------------------- 214 (268)
T TIGR00393 155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLG-------------------- 214 (268)
T ss_pred hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhc--------------------
Confidence 5789999988 999999999999999999999999999985 899999999998753110
Q ss_pred hhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeee
Q 023512 119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILT 191 (281)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt 191 (281)
......++.++|. +++.++++++++.++++.|.+.+..++||++ +|+++|+|+
T Consensus 215 ------------------~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 215 ------------------GGSLKSEVRDFMT--LGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred ------------------CCcccCcHHHhCC--CCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 0011234667776 6788999999999999999999999999999 789999985
No 170
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.33 E-value=1.2e-11 Score=89.24 Aligned_cols=99 Identities=21% Similarity=0.288 Sum_probs=81.2
Q ss_pred ecCCchHHHHHHHhHhCC-----CcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCC
Q 023512 54 VLSDTLAVEALQKMVQGK-----FRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (281)
Q Consensus 54 v~~~~~l~~a~~~m~~~~-----~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (281)
+++++++.++++.|.+++ +..+||+++ ++++|+++..+++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~~------------------------------- 50 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLAD------------------------------- 50 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcCC-------------------------------
Confidence 578999999999998877 478999985 8999999998885310
Q ss_pred hhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHH
Q 023512 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM 197 (281)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~ 197 (281)
...++.++|. .++..+.+++++.++++.|...+...+||++ +|+++|++|..|+++
T Consensus 51 ------------~~~~v~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~ 107 (109)
T cd04606 51 ------------PDTPVSDIMD--TDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVID 107 (109)
T ss_pred ------------CcchHHHHhC--CCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhh
Confidence 0012334443 5688999999999999999999999999998 899999999999973
No 171
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.33 E-value=6.4e-11 Score=103.39 Aligned_cols=199 Identities=22% Similarity=0.243 Sum_probs=145.2
Q ss_pred CCCeEecCCchHHHHHHHhHhCCCcEeeEee--CCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCC
Q 023512 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSIS 126 (281)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d--~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (281)
.....++...++.+|+..+..++++..|+++ .++++|+++..|++........... ....+ .....
T Consensus 76 ~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~~~~~~g~~~~~d~i~~~~~~~~~~~-~~~~~-~~~~~---------- 143 (381)
T KOG1764|consen 76 SKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSKKQQFVGMLTITDFITVLLRYYKSKS-SLDNI-EVLED---------- 143 (381)
T ss_pred ceeEEeeCCCcHHHHHHHHHhhceeeeccccCccceeEEEEEHHHHHHHHHHhhccCC-cHHHH-hhhhh----------
Confidence 4678899999999999999999999999998 3899999999999887655433200 00000 00000
Q ss_pred ChhhHHHHHHHhhcCCCc--cccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe--CCeeeEeeeHHHHHHHHHhc
Q 023512 127 GPNTFIETLRERMFRPSL--STIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQ 202 (281)
Q Consensus 127 ~~~~~~~~~~~~~~~~~v--~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Givt~~di~~~~~~~ 202 (281)
.+......+ ..-....+++..+.+..++.++...+.+.+++++||.| .+.+..++|.+-++..+...
T Consensus 144 ---------~~~~~~~~~~~~~~~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~ 214 (381)
T KOG1764|consen 144 ---------SQLSKRREVECLLKETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLN 214 (381)
T ss_pred ---------hhccccchhhhhhccccCCCceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHh
Confidence 000000111 00111114448899999999999999999999999998 78999999999999655543
Q ss_pred CCCC-----ccccccccc--c-CCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhch
Q 023512 203 NLPA-----DSTLVEKVM--T-PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT 268 (281)
Q Consensus 203 ~~~~-----~~~~v~~~~--~-~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~ 268 (281)
.... ...++.++. . .+...+.+++++.+|+++|...++..+|||+++|+.+|+++..|+......+
T Consensus 215 ~~~~~~~~~l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~ 288 (381)
T KOG1764|consen 215 GRLLPLPSLLSKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREG 288 (381)
T ss_pred hcccccHHHhhCCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcC
Confidence 3222 122333322 1 3578899999999999999999999999999999999999999999886544
No 172
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.33 E-value=7.9e-12 Score=115.43 Aligned_cols=133 Identities=16% Similarity=0.146 Sum_probs=98.6
Q ss_pred HHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhc-------
Q 023512 131 FIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQ------- 202 (281)
Q Consensus 131 ~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~------- 202 (281)
..+.........++.++|+. +++.++++++++.++.+.|.+++++.+||+| +|+++|++|..|++.....+
T Consensus 235 t~~t~~~l~~~~~V~~iM~~-~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~~~~iLVD~~ 313 (546)
T PRK14869 235 TFTTARLINQSIPVSYIMTT-EDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVRKKVILVDHN 313 (546)
T ss_pred HHHHHHHhhcCCCHHHhccC-CCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhccccCceEEEcCc
Confidence 33334444456678999962 5799999999999999999999999999999 89999999999998422110
Q ss_pred -------CCCCc-------cccccccccCCCeee---eCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhh
Q 023512 203 -------NLPAD-------STLVEKVMTPNPECA---TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 265 (281)
Q Consensus 203 -------~~~~~-------~~~v~~~~~~~~~~v---~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~ 265 (281)
..... .-++.++++..|+.+ +...+...+.+.|.+.+....|++. ..-+.||++.++.++..
T Consensus 314 e~~q~~~~~~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia-~~ll~gIlsDT~~f~~~ 392 (546)
T PRK14869 314 EKSQAVEGIEEAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIA-GLLLAAILSDTLLFKSP 392 (546)
T ss_pred cccccccchhhceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHHhcCccCC
Confidence 00000 013455666666554 4477778899999999998888875 56799999999988763
No 173
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.33 E-value=2.4e-11 Score=109.91 Aligned_cols=119 Identities=24% Similarity=0.339 Sum_probs=96.7
Q ss_pred CCcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhh
Q 023512 38 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG 116 (281)
Q Consensus 38 ~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~ 116 (281)
+.+.+++++|.+++.++.+++++.++++.|.+++++.+||+|+ ++++|+|+..|++......
T Consensus 332 l~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~----------------- 394 (454)
T TIGR01137 332 LKNATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAG----------------- 394 (454)
T ss_pred hccCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhcc-----------------
Confidence 5677899999999999999999999999999999999999986 8999999999987642110
Q ss_pred HhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHH
Q 023512 117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (281)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~ 196 (281)
......++.++|. .++.++++++++.++++.|.+++ ..+|.++++++|+||.+|++
T Consensus 395 --------------------~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~~~~~~--~~vV~~~g~liGvvt~~dll 450 (454)
T TIGR01137 395 --------------------KANPDDAVSKVMS--KKFIQIGEGEKLSDLSKFLEKNS--SAIVTEEGKPIGVVTKIDLL 450 (454)
T ss_pred --------------------CCCcCCCHHHhcC--CCCeEECCcCcHHHHHHHHHHCC--eeEEEECCEEEEEEEHHHHH
Confidence 0011124666775 67889999999999999998754 35565689999999999998
Q ss_pred H
Q 023512 197 M 197 (281)
Q Consensus 197 ~ 197 (281)
.
T Consensus 451 ~ 451 (454)
T TIGR01137 451 S 451 (454)
T ss_pred H
Confidence 4
No 174
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.32 E-value=1.3e-11 Score=89.72 Aligned_cols=91 Identities=36% Similarity=0.571 Sum_probs=78.8
Q ss_pred CCCccEEEEEcCCCcEEEEEehHHHHHHHHHhcCCCCcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEee-CC
Q 023512 3 ARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NG 81 (281)
Q Consensus 3 ~~~~~~~~v~~~~~~~~Gi~t~~d~~~~~~~~~~~~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d-~~ 81 (281)
+++...++|.+++++++|+++..++++ .+.........++.++|.+++.++++++++.++++.|.+++...+||++ ++
T Consensus 22 ~~~~~~~~v~d~~~~~~G~v~~~~i~~-~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~ 100 (114)
T cd04604 22 RKGLGMTAVVDEDGRLVGIFTDGDLRR-ALEKGLDILTLPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDNG 100 (114)
T ss_pred hcCccEEEEEcCCCCEEEEechHHHHH-HHhccCccccCCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCC
Confidence 456778999998889999999999974 4444445555689999999999999999999999999999999999998 59
Q ss_pred eEEEEEehHHHHH
Q 023512 82 EVIALLDIAKCLY 94 (281)
Q Consensus 82 ~~vGvi~~~dll~ 94 (281)
+++|+++..|++.
T Consensus 101 ~~iG~it~~di~~ 113 (114)
T cd04604 101 RPVGVLHIHDLLR 113 (114)
T ss_pred CEEEEEEHHHhhc
Confidence 9999999999864
No 175
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.32 E-value=3e-11 Score=90.65 Aligned_cols=98 Identities=30% Similarity=0.297 Sum_probs=78.8
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCcc----------ccccccc------
Q 023512 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADS----------TLVEKVM------ 215 (281)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~----------~~v~~~~------ 215 (281)
++.++++++++.++++.|...+.+++||+| +|+++|++|..|+++.+......... ..+.++|
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 81 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGISY 81 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhhhh
Confidence 478899999999999999988999999999 79999999999998655433221100 0123344
Q ss_pred ---cCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCC
Q 023512 216 ---TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDG 250 (281)
Q Consensus 216 ---~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~ 250 (281)
..+++++.+++++.+|++.|.+++.+++||+++++
T Consensus 82 ~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~ 119 (133)
T cd04592 82 GGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGV 119 (133)
T ss_pred cccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCc
Confidence 46688999999999999999999999999998553
No 176
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=99.30 E-value=9.4e-12 Score=104.48 Aligned_cols=126 Identities=20% Similarity=0.240 Sum_probs=108.1
Q ss_pred hcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe--CCeeeEeeeHHHHHHHHHhcCCCCcccccccccc
Q 023512 139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT 216 (281)
Q Consensus 139 ~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~ 216 (281)
+..-+|+|+|.|.++...++.+++.+++++.+....+.++|+.. -+.++|++..+|+++.+..... . ...+++.
T Consensus 197 Le~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~-~---~k~d~~~ 272 (423)
T COG4536 197 LENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE-F---TKEDILR 272 (423)
T ss_pred cccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc-c---cHhHHHH
Confidence 34567999999999999999999999999999999999999997 3459999999999855544432 2 3344443
Q ss_pred --CCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhch
Q 023512 217 --PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT 268 (281)
Q Consensus 217 --~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~ 268 (281)
..|++++.++++.+.+..|.+++.+...||||.|.+.|++|..||+..+--.
T Consensus 273 ~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVGd 326 (423)
T COG4536 273 AADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVGD 326 (423)
T ss_pred HhcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhcc
Confidence 6899999999999999999999999999999999999999999999886544
No 177
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.29 E-value=8.9e-11 Score=86.00 Aligned_cols=111 Identities=16% Similarity=0.195 Sum_probs=85.9
Q ss_pred CCeEecCCchHHHHHHHhHhCC-CcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512 50 NPTFVLSDTLAVEALQKMVQGK-FRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (281)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~-~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (281)
++.++++++++.++++.|...+ +..+||+++++++|+++..+++........
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~~l~~~~~~~~~--------------------------- 54 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDDGRPVGLIMREALMELLSTPYG--------------------------- 54 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEECCeeEEEEEHHHHHHHHhchhh---------------------------
Confidence 5667899999999999998877 889999988999999999998754221000
Q ss_pred hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCcc---EEEEEe-CCeeeEeeeHHHHH
Q 023512 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLS---SAVVTV-ENKPRGILTSKDIL 196 (281)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~---~~~V~~-~~~~~Givt~~di~ 196 (281)
.......++.++|. .++.++++++++.+++..|.+.+.. ..+|++ +|+++|+||..|++
T Consensus 55 -------~~~~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~ 117 (119)
T cd04598 55 -------RALYGKKPVSEVMD--PDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLL 117 (119)
T ss_pred -------HHHHcCCcHHHhcC--CCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHh
Confidence 00112234667775 6789999999999999999887643 335665 89999999999996
No 178
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.29 E-value=7.3e-11 Score=85.05 Aligned_cols=106 Identities=24% Similarity=0.314 Sum_probs=83.3
Q ss_pred CCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCChh
Q 023512 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 129 (281)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (281)
++.++++++++.++.+.|.+++++.+||+++++++|+++..++.+.......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~~~---------------------------- 53 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDDGRVVGSIDESDLLDALIEGKA---------------------------- 53 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeCCeeEEEEeHHHHHHHHhcccc----------------------------
Confidence 4678899999999999999999999999988999999999998764221100
Q ss_pred hHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512 130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (281)
Q Consensus 130 ~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~ 196 (281)
....++.++|. +++.++++++++.++++.|.+ ... +||++ +|+++|++|.+|++
T Consensus 54 ---------~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~-~~~-~~vv~~~~~~~Gvvt~~di~ 108 (110)
T cd04609 54 ---------KFSLPVREVMG--EPLPTVDPDAPIEELSELLDR-GNV-AVVVDEGGKFVGIITRADLL 108 (110)
T ss_pred ---------ccCcCHHHHhc--CCCceeCCCCcHHHHHHHHHh-CCc-eeEEecCCeEEEEEeHHHhh
Confidence 00122444554 568889999999999999988 333 67776 79999999999996
No 179
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=8.8e-11 Score=84.27 Aligned_cols=102 Identities=26% Similarity=0.353 Sum_probs=84.8
Q ss_pred CCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (281)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (281)
++.++.+++++.+++..|.+.++..+||+++ ++++|+++..+++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~-------------------------------- 49 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNP-------------------------------- 49 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhcc--------------------------------
Confidence 4678899999999999999989999999986 8999999999986310
Q ss_pred hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHH
Q 023512 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (281)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~ 196 (281)
....+.++|. .++.++++++++.+++..|.+.+...+||+++|+++|++|..|++
T Consensus 50 -----------~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~~~~G~it~~d~~ 104 (106)
T cd04638 50 -----------EEEQLALLMT--RDPPTVSPDDDVKEAAKLMVENNIRRVPVVDDGKLVGIVTVADIV 104 (106)
T ss_pred -----------ccchHHHHhc--CCCceECCCCCHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHhh
Confidence 0001233343 568889999999999999999999999999988999999999986
No 180
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.27 E-value=1.3e-10 Score=83.66 Aligned_cols=108 Identities=27% Similarity=0.339 Sum_probs=87.4
Q ss_pred CCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (281)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (281)
++.++++++++.++++.|.+++...+||+++ ++++|+++..+++.........
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~-------------------------- 55 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLD-------------------------- 55 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccCC--------------------------
Confidence 5678899999999999999999999999986 8999999999997653211000
Q ss_pred hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (281)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~ 196 (281)
....+.++|. .++..+.+++++.+++..|.+.+.+.+||++ ++++.|+++..|++
T Consensus 56 -----------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~ 111 (113)
T cd02205 56 -----------PLVTVGDVMT--RDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDIL 111 (113)
T ss_pred -----------ccccHHHHhc--CCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhh
Confidence 0000233443 6688899999999999999999999999999 79999999999986
No 181
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.19 E-value=1.4e-10 Score=102.53 Aligned_cols=119 Identities=18% Similarity=0.269 Sum_probs=104.8
Q ss_pred cCCCccccccCCCceeEeCCCCcHHHHHHHHHHc-----CccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccc
Q 023512 140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL-----RLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEK 213 (281)
Q Consensus 140 ~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~-----~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~ 213 (281)
...+...+|+ ..++++.++.|+.+++..+++. ....+.|+| ++++.|+++.++++ ....+.++++
T Consensus 130 ~e~taG~~Mt--~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll-------~a~~~~~i~~ 200 (451)
T COG2239 130 PEDTAGRIMT--TEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLL-------TAEPDELLKD 200 (451)
T ss_pred Chhhhhccce--eeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHh-------cCCcHhHHHH
Confidence 3456788898 8899999999999999999853 478889999 88899999999997 2223558999
Q ss_pred cccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512 214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA 267 (281)
Q Consensus 214 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~ 267 (281)
+|.+.++++.+++..+++.+.+.+++.-.+||||++++++|+||..|++.....
T Consensus 201 im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~e 254 (451)
T COG2239 201 LMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEE 254 (451)
T ss_pred HhcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987543
No 182
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=99.18 E-value=7.2e-11 Score=74.79 Aligned_cols=56 Identities=34% Similarity=0.571 Sum_probs=52.5
Q ss_pred ccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhh
Q 023512 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 266 (281)
Q Consensus 211 v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~ 266 (281)
++++|+++++++++++++.++++.|.+++.+++||+|++|+++|+||.+||+++..
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence 46789999999999999999999999999999999999999999999999998753
No 183
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=99.15 E-value=1.4e-10 Score=73.40 Aligned_cols=54 Identities=30% Similarity=0.445 Sum_probs=50.8
Q ss_pred ccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHH
Q 023512 43 VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDA 96 (281)
Q Consensus 43 v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~ 96 (281)
|+++|.++++++++++++.++++.|.+++++.+||+|+ ++++|+++.+|++++.
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l 55 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKAL 55 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHH
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhh
Confidence 57899999999999999999999999999999999975 9999999999998864
No 184
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.12 E-value=6.6e-10 Score=83.30 Aligned_cols=115 Identities=15% Similarity=0.004 Sum_probs=77.2
Q ss_pred CCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCC
Q 023512 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (281)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (281)
+.+.++.+++++.+|++.|.++++..+||+|+ ++++|+++..|++.+............... +
T Consensus 1 ~~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~----------~------ 64 (133)
T cd04592 1 TKYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDET----------K------ 64 (133)
T ss_pred CCceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhh----------c------
Confidence 35788999999999999999999999999986 999999999999876422100000000000 0
Q ss_pred hhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe
Q 023512 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV 182 (281)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~ 182 (281)
........+.+....+.+.|. .++.++.+++++.+|++.|.+++.+++||++
T Consensus 65 -~~~~~~v~~i~~~~~~~~~~~--~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd 116 (133)
T cd04592 65 -QTNTCLVSSVCTKGISYGGQE--CGLWTCTPDTDLTTAKKLMEAKGVKQLPVVK 116 (133)
T ss_pred -ccccccHHHHhhhhhhhcccC--CCCEEECCCCCHHHHHHHHHHcCCCcCCEec
Confidence 000000001111111222333 5688999999999999999999999999998
No 185
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=99.09 E-value=5e-10 Score=88.42 Aligned_cols=158 Identities=15% Similarity=0.134 Sum_probs=120.9
Q ss_pred cCCCCcccccccccC--CCeEecCCchHHHHHHHhHhCCCcEeeEeeC--CeEEEEEehHHHHHHHHHHHHHHHHhhhhH
Q 023512 35 ELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEKGKAI 110 (281)
Q Consensus 35 ~~~~~~~~v~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~--~~~vGvi~~~dll~~~~~~~~~~~~~~~~~ 110 (281)
...+.+.+|.|+|.+ +.++++.+.++.+.+..+.+..++++||+.+ +.+.|++-.+|++.+.....
T Consensus 61 vm~iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~---------- 130 (293)
T COG4535 61 VMDIADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDA---------- 130 (293)
T ss_pred HHHHHHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCc----------
Confidence 346778899999985 7799999999999999999999999999963 88999999999987632210
Q ss_pred HHHHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEe
Q 023512 111 AAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGI 189 (281)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gi 189 (281)
....+.++. +|.++++++..+...++.|+..+.+..+|+| .|-+.|+
T Consensus 131 -----------------------------~~F~i~~lL---RPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGL 178 (293)
T COG4535 131 -----------------------------EPFDIKELL---RPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGL 178 (293)
T ss_pred -----------------------------ccccHHHhc---ccceecccchhHHHHHHHHHhhcCceEEEEeccCCeeee
Confidence 001122222 7799999999999999999999888999999 7889999
Q ss_pred eeHHHHHHHHHhcCCCCcc----ccccccccCCCeeeeCCCCHHHHHHHh
Q 023512 190 LTSKDILMRVISQNLPADS----TLVEKVMTPNPECATIDTPIVDALHIM 235 (281)
Q Consensus 190 vt~~di~~~~~~~~~~~~~----~~v~~~~~~~~~~v~~~~~l~~~~~~~ 235 (281)
||..|++..+.+.-.+..+ ..+..+ .+.-+.+..-+++++..+.|
T Consensus 179 VTIEDiLEqIVGdIEDE~Deee~~dI~~l-s~~~~~VrALT~IedFNe~F 227 (293)
T COG4535 179 VTIEDILEQIVGDIEDEYDEEEDADIRQL-SRHTWRVRALTEIEDFNEAF 227 (293)
T ss_pred EEHHHHHHHHhcccccccchhhhhhhHhh-cCCceEEEecccHHHHHHHh
Confidence 9999999888765443221 112221 35567777777777766665
No 186
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.02 E-value=2.1e-08 Score=87.45 Aligned_cols=107 Identities=19% Similarity=0.197 Sum_probs=90.9
Q ss_pred eeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHHH
Q 023512 154 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (281)
Q Consensus 154 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~ 232 (281)
.....++.+..++++.|...+...+.|++ ++++.|.++..++. ...... ..+.+.+.....++++++++.+++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 325 (363)
T TIGR01186 252 PITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIK-QARKKA-----QGLQDVLIDDIYTVDAGTLLRETV 325 (363)
T ss_pred ceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHH-HHhhcC-----CchhhhhccCCceECCCCcHHHHH
Confidence 34566777899999999988888888888 89999999999985 444332 146667777788999999999999
Q ss_pred HHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA 267 (281)
Q Consensus 233 ~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~ 267 (281)
..|.+++.. +||+|++|+++|+||..+++++...
T Consensus 326 ~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 326 RKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYD 359 (363)
T ss_pred HHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence 999999998 9999999999999999999988654
No 187
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.01 E-value=2.4e-09 Score=94.80 Aligned_cols=120 Identities=21% Similarity=0.277 Sum_probs=103.0
Q ss_pred HhcCCCCcccccccccCCCeEecCCchHHHHHHHhHhC-----CCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHh
Q 023512 33 ARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQG-----KFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEK 106 (281)
Q Consensus 33 ~~~~~~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~-----~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~ 106 (281)
....++.+-++..+|+++.+.++++.|+.+++..+.+. .++.+.|+|+ ++++|+++.++++...
T Consensus 124 ~~~l~y~e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a~---------- 193 (451)
T COG2239 124 RQLLSYPEDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTAE---------- 193 (451)
T ss_pred HHhcCCChhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcCC----------
Confidence 34557778899999999999999999999999999953 4678899996 8899999999997531
Q ss_pred hhhHHHHHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCe
Q 023512 107 GKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENK 185 (281)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~ 185 (281)
....+.++|. +++..+.+.+..+++.+.|.+++.-.+||+| +++
T Consensus 194 ---------------------------------~~~~i~~im~--~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~ 238 (451)
T COG2239 194 ---------------------------------PDELLKDLME--DDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNR 238 (451)
T ss_pred ---------------------------------cHhHHHHHhc--ccceeecccCCHHHHHHHHHHhCCeecceECCCCc
Confidence 1113566676 6699999999999999999999999999999 889
Q ss_pred eeEeeeHHHHHH
Q 023512 186 PRGILTSKDILM 197 (281)
Q Consensus 186 ~~Givt~~di~~ 197 (281)
++|++|..|++.
T Consensus 239 LiG~itiDDiid 250 (451)
T COG2239 239 LIGIITIDDIID 250 (451)
T ss_pred eeeeeeHHHHHH
Confidence 999999999984
No 188
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.99 E-value=9.5e-10 Score=86.88 Aligned_cols=123 Identities=17% Similarity=0.197 Sum_probs=106.5
Q ss_pred cCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe--CCeeeEeeeHHHHHHHHHhcCCCCccccccccccC
Q 023512 140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP 217 (281)
Q Consensus 140 ~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~ 217 (281)
....+.++|.|.....++..+.++.+.+..+.+..++++||.. .+.+.|++-.+|++ +++..... ...+.++. +
T Consensus 65 adl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL-~~~~~~~~--~F~i~~lL-R 140 (293)
T COG4535 65 ADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLL-PFMRSDAE--PFDIKELL-R 140 (293)
T ss_pred HHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHH-HHhcCCcc--cccHHHhc-c
Confidence 4556899999888999999999999999999999999999998 67799999999999 44433322 12466665 6
Q ss_pred CCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhh
Q 023512 218 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 266 (281)
Q Consensus 218 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~ 266 (281)
+.+.++++-.+...++-|...+.+...|+||-|-+-|.||..|++..+-
T Consensus 141 Pav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIV 189 (293)
T COG4535 141 PAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIV 189 (293)
T ss_pred cceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHh
Confidence 7788999999999999999999999999999999999999999998854
No 189
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.89 E-value=7.4e-08 Score=85.09 Aligned_cols=103 Identities=18% Similarity=0.195 Sum_probs=88.0
Q ss_pred eCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHHHHHh
Q 023512 157 ISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIM 235 (281)
Q Consensus 157 v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~ 235 (281)
..++.+..+++..|...+.++++|+| ++++.|+++..++. ...... ..+.+.+.....++.+++++.+++..+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (400)
T PRK10070 290 KTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLK-TALTQQ-----QGLDAALIDAPLAVDAQTPLSELLSHV 363 (400)
T ss_pred cCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHH-hhhhcC-----CchhhhhccCCceeCCCCCHHHHHHHH
Confidence 44677899999999999999999999 89999999999995 333321 146666677788999999999999999
Q ss_pred HhCCCCeeeEecCCCcEEEEEEhhhHHHhhh
Q 023512 236 HDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 266 (281)
Q Consensus 236 ~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~ 266 (281)
.+.... +||+|++|+++|+|+..+++++..
T Consensus 364 ~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~ 393 (400)
T PRK10070 364 GQAPCA-VPVVDEDQQYVGIISKGMLLRALD 393 (400)
T ss_pred HhCCCc-EEEECCCCcEEEEEEHHHHHHHHH
Confidence 998766 999999999999999999998864
No 190
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.74 E-value=7e-07 Score=77.99 Aligned_cols=149 Identities=15% Similarity=0.239 Sum_probs=103.4
Q ss_pred cEEEEEcCCCcEEEEEehHHHHHH--------HHHhcC---CCCcccccccccCCCeEecCCchHHHHHHHhHhCCCcEe
Q 023512 7 DALLLTDSNALLCGILTDKDIATR--------VIAREL---NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHL 75 (281)
Q Consensus 7 ~~~~v~~~~~~~~Gi~t~~d~~~~--------~~~~~~---~~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~ 75 (281)
..+.+.+ +|+++..-+..+++.. ...... .+....+.+.|........++.+..++++.|...+...+
T Consensus 198 drI~vl~-~G~iv~~g~~~ei~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (363)
T TIGR01186 198 DRIVIMK-AGEIVQVGTPDEILRNPANEYVEEFIGKVDLSQVFDAERIAQRMNTGPITKTADKGPRSALQLMRDERVDSL 276 (363)
T ss_pred CEEEEEe-CCEEEeeCCHHHHHhCcccHHHHHHhhccchhcccchhhHhhhccccceeecCCCCHHHHHHHHHhcCCceE
Confidence 4556665 4788777777776532 111110 111112222333444456677789999999999999999
Q ss_pred eEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCce
Q 023512 76 PVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKV 154 (281)
Q Consensus 76 pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~ 154 (281)
.|+++ +++.|.++..++..+... ...+.+.+. ...
T Consensus 277 ~~~~~~~~~~g~~~~~~~~~~~~~------------------------------------------~~~~~~~~~--~~~ 312 (363)
T TIGR01186 277 YVVDRQNKLVGVVDVESIKQARKK------------------------------------------AQGLQDVLI--DDI 312 (363)
T ss_pred EEEcCCCCEEEEEeHHHHHHHhhc------------------------------------------CCchhhhhc--cCC
Confidence 99985 999999999887543110 011233332 557
Q ss_pred eEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHh
Q 023512 155 VTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVIS 201 (281)
Q Consensus 155 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~ 201 (281)
.++++++++.+++..|.+++.. +||++ +|+++|+||..+++..+..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 313 YTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYD 359 (363)
T ss_pred ceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence 8899999999999999999888 99999 9999999999999865544
No 191
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.70 E-value=3.8e-08 Score=88.00 Aligned_cols=155 Identities=17% Similarity=0.134 Sum_probs=103.5
Q ss_pred CcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC------CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHH
Q 023512 39 EETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN------GEVIALLDIAKCLYDAIARMERAAEKGKAIAA 112 (281)
Q Consensus 39 ~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~------~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~ 112 (281)
.+.+++++|++++++++.-+.+....+.+.++.++.+||+|+ +++.|+|-++.++.-......... +......
T Consensus 580 r~L~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~-~~~~~~~ 658 (762)
T KOG0474|consen 580 RNLTAGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEE-SRSTFDL 658 (762)
T ss_pred hhhhHhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhcc-CccccCc
Confidence 467899999999999999999999999999999999999983 478898877777654333211100 0000000
Q ss_pred HHh--hHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEe
Q 023512 113 AVE--GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGI 189 (281)
Q Consensus 113 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gi 189 (281)
... -..........+-.+..-...+.--...+..+|. +.++++++++++..+..+|++-+.+++.|++ .+..+|+
T Consensus 659 ~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n--~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gi 736 (762)
T KOG0474|consen 659 PVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMN--PSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGI 736 (762)
T ss_pred chhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccC--CCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEE
Confidence 000 0000000000000111101111122345677776 6799999999999999999999999999999 6677999
Q ss_pred eeHHHHH
Q 023512 190 LTSKDIL 196 (281)
Q Consensus 190 vt~~di~ 196 (281)
+|++|+.
T Consensus 737 lTR~D~~ 743 (762)
T KOG0474|consen 737 LTRKDLA 743 (762)
T ss_pred Eehhhhh
Confidence 9999997
No 192
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.69 E-value=1.2e-06 Score=77.52 Aligned_cols=150 Identities=11% Similarity=0.070 Sum_probs=102.8
Q ss_pred cEEEEEcCCCcEEEEEehHHHHH--------HHHHhcCCCCcccccccccCCC---eEecCCchHHHHHHHhHhCCCcEe
Q 023512 7 DALLLTDSNALLCGILTDKDIAT--------RVIARELNLEETPVSKVMTRNP---TFVLSDTLAVEALQKMVQGKFRHL 75 (281)
Q Consensus 7 ~~~~v~~~~~~~~Gi~t~~d~~~--------~~~~~~~~~~~~~v~dim~~~~---~~v~~~~~l~~a~~~m~~~~~~~~ 75 (281)
..+.+.+ +|+++..-+..+++. .++.......-.++.++|.+.+ +...++.+..+++..|...+...+
T Consensus 233 Dri~vL~-~G~i~~~g~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (400)
T PRK10070 233 DRIAIMQ-NGEVVQVGTPDEILNNPANDYVRTFFRGVDISQVFSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYG 311 (400)
T ss_pred CEEEEEE-CCEEEecCCHHHHHhCcccHHHHHHHhccccccccchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceE
Confidence 4455555 366665545555532 1111111111246777885433 233467789999999999999999
Q ss_pred eEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCce
Q 023512 76 PVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKV 154 (281)
Q Consensus 76 pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~ 154 (281)
+|+|+ ++++|+++..++....-. ...+.+.+. ...
T Consensus 312 ~~~~~~~~~~g~~~~~~~~~~~~~------------------------------------------~~~~~~~~~--~~~ 347 (400)
T PRK10070 312 YVIERGNKFVGAVSIDSLKTALTQ------------------------------------------QQGLDAALI--DAP 347 (400)
T ss_pred EEEcCCCcEEEEEeHHHHHhhhhc------------------------------------------CCchhhhhc--cCC
Confidence 99985 999999999998643100 011222232 557
Q ss_pred eEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhc
Q 023512 155 VTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQ 202 (281)
Q Consensus 155 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~ 202 (281)
.++.+++++.+++..+.+.... +||+| +|+++|+||..++++.+...
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 348 LAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDRE 395 (400)
T ss_pred ceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHhc
Confidence 8899999999999999987655 89999 99999999999998655443
No 193
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.68 E-value=5.4e-08 Score=82.92 Aligned_cols=162 Identities=12% Similarity=0.155 Sum_probs=115.6
Q ss_pred CCCeEecCCchHHHHHHHhHhCCCcEeeEeeC----CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCC
Q 023512 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTS 124 (281)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~----~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (281)
.+++++.|+.++.++++....+++..+||.++ .+++|+|+.+|+-..
T Consensus 116 ~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~----------------------------- 166 (503)
T KOG2550|consen 116 NNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL----------------------------- 166 (503)
T ss_pred cCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh-----------------------------
Confidence 47789999999999999999999999999974 689999999997321
Q ss_pred CCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcC
Q 023512 125 ISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN 203 (281)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~ 203 (281)
.-....+.++|+ .+.++.+.+.++.++-+.+.+++-..+||+| +|+++.++++.|+. +...-.
T Consensus 167 -------------~~~~~~~~~vmt--~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~-k~~~yP 230 (503)
T KOG2550|consen 167 -------------EDNSLLVSDVMT--KNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLM-KNRDYP 230 (503)
T ss_pred -------------hcccchhhhhcc--cccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhh-hhcCCC
Confidence 112234788888 4458899999999999999999889999999 99999999999996 332111
Q ss_pred CCCccccccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEh
Q 023512 204 LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDV 258 (281)
Q Consensus 204 ~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~ 258 (281)
.... ..-+.++-... +...+.=.+-++++.+.+++.+..-..+|.-+--+..
T Consensus 231 lask-~~~kqll~gAa--iGTre~dK~rl~ll~~aGvdvviLDSSqGnS~~qiem 282 (503)
T KOG2550|consen 231 LASK-DSTKQLLCGAA--IGTRDDDKERLDLLVQAGVDVVILDSSQGNSIYQLEM 282 (503)
T ss_pred cccc-Ccccceeeeec--cccccchhHHHHHhhhcCCcEEEEecCCCcchhHHHH
Confidence 1100 11222332221 2333334677788888888777554466764433333
No 194
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.58 E-value=1.2e-07 Score=84.92 Aligned_cols=124 Identities=13% Similarity=0.206 Sum_probs=102.9
Q ss_pred hcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe---C---CeeeEeeeHHHHHHHHHhcCCCC------
Q 023512 139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---E---NKPRGILTSKDILMRVISQNLPA------ 206 (281)
Q Consensus 139 ~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~---~---~~~~Givt~~di~~~~~~~~~~~------ 206 (281)
+...+..++|. +++..++..+.+..+.+.++...++.+||+| . +++.|+|-+++++ .++.+....
T Consensus 579 mr~L~a~ev~~--~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~-vlL~~~~f~~~~~~~ 655 (762)
T KOG0474|consen 579 MRNLTAGEVMS--KPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLL-VLLKKRVFVEESRST 655 (762)
T ss_pred hhhhhHhhhcc--CCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHH-HHHHhhhhhccCccc
Confidence 34456788887 7899999999999999999999999999998 2 4688999999987 443221000
Q ss_pred --------------------------------ccccccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEE
Q 023512 207 --------------------------------DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVD 254 (281)
Q Consensus 207 --------------------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~G 254 (281)
.-.++..+|++.|+++++++++..++.+|.+-+++++.|++..+..+|
T Consensus 656 ~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~g 735 (762)
T KOG0474|consen 656 FDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVG 735 (762)
T ss_pred cCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeE
Confidence 013566778899999999999999999999999999999998888999
Q ss_pred EEEhhhHHHhh
Q 023512 255 VVDVIHITHAA 265 (281)
Q Consensus 255 vis~~di~~~~ 265 (281)
++|+.|+..+.
T Consensus 736 ilTR~D~~~~~ 746 (762)
T KOG0474|consen 736 ILTRKDLARYR 746 (762)
T ss_pred EEehhhhhhHH
Confidence 99999999764
No 195
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.36 E-value=9.5e-07 Score=64.15 Aligned_cols=55 Identities=29% Similarity=0.579 Sum_probs=51.0
Q ss_pred ccccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512 209 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (281)
Q Consensus 209 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~ 263 (281)
.++.++|.+.+.++++++++.++++.|.+.+.+.+||+|++|+++|+|+..||.+
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 4688999889999999999999999999999999999998899999999999864
No 196
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.36 E-value=8.8e-07 Score=64.33 Aligned_cols=53 Identities=26% Similarity=0.412 Sum_probs=49.9
Q ss_pred ccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHH
Q 023512 41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCL 93 (281)
Q Consensus 41 ~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll 93 (281)
.+++++|.+++.++++++++.++++.|.++++..+||+++ ++++|+++..++.
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~ 111 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLA 111 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhh
Confidence 6899999999999999999999999999999999999985 8999999999975
No 197
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.22 E-value=1.8e-05 Score=71.43 Aligned_cols=113 Identities=11% Similarity=0.195 Sum_probs=91.6
Q ss_pred ceeEeCCC-CcHHHHHHHHHHcCccEEEEEe---CCeeeEeeeHHHHHHHHHhcC-CC---------------------C
Q 023512 153 KVVTISPT-DTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQN-LP---------------------A 206 (281)
Q Consensus 153 ~~~~v~~~-~~l~~~~~~~~~~~~~~~~V~~---~~~~~Givt~~di~~~~~~~~-~~---------------------~ 206 (281)
+..+++.+ .++.++...|.+..++.+||+- .++++|++.++|+.-.+.... .+ +
T Consensus 557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~~~~~ 636 (696)
T KOG0475|consen 557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAVAGIP 636 (696)
T ss_pred hheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccccCCCCccccCCCC
Confidence 46666555 8999999999998888788764 678999999999976554221 10 1
Q ss_pred ccccccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhh
Q 023512 207 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 266 (281)
Q Consensus 207 ~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~ 266 (281)
.....+++|+..|.++...++.+.+++++.+-+++.+.|. ++|++.|+||.+|+++..+
T Consensus 637 ~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~-~~G~l~Giitkkd~l~~~r 695 (696)
T KOG0475|consen 637 SRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVT-KNGILLGIITKKDCLRHTR 695 (696)
T ss_pred CCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEc-cCCeeEeeeehHHHHHhhc
Confidence 1245678888999999999999999999999999999775 5999999999999998764
No 198
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=98.12 E-value=1e-05 Score=48.23 Aligned_cols=47 Identities=30% Similarity=0.454 Sum_probs=42.6
Q ss_pred CeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhh
Q 023512 219 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 265 (281)
Q Consensus 219 ~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~ 265 (281)
+.++++++++.++.+.|.+.+.+.+||++++++++|+++..++++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 56788999999999999999999999999889999999999998754
No 199
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.10 E-value=1.6e-05 Score=66.51 Aligned_cols=147 Identities=16% Similarity=0.252 Sum_probs=103.9
Q ss_pred EeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCChhhHHHHHHHhh---cCCCccccccC
Q 023512 74 HLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERM---FRPSLSTIIPE 150 (281)
Q Consensus 74 ~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~m~~ 150 (281)
++.+..+|+++-+-+..+++.. |++++...+-+.. ...+..++|.+
T Consensus 234 rIaimkdG~ivQ~Gtp~eIl~~-------------------------------PAndYV~~Fv~~v~~~~VltA~~IM~~ 282 (386)
T COG4175 234 RIAIMKDGEIVQVGTPEEILLN-------------------------------PANDYVRDFVRNVDRSRVLTAKDIMRR 282 (386)
T ss_pred eEEEecCCeEEEeCCHHHHHcC-------------------------------ccHHHHHHHHhcCChhheeeHHHhhcc
Confidence 5666677888888888887642 4455555553322 23345777764
Q ss_pred CCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHH
Q 023512 151 KSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIV 229 (281)
Q Consensus 151 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~ 229 (281)
......-.+......++..+.......+.+++ .++.+|+++..+.... .+...+.++..++++.
T Consensus 283 ~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~---------------~~~~~~~~v~~d~~~~ 347 (386)
T COG4175 283 PDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKA---------------ALIDDVLTVDADTPLS 347 (386)
T ss_pred cccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchhcc---------------cccccccccCccchHH
Confidence 22222333444556677888877766666666 7779999999998621 3446677888999999
Q ss_pred HHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512 230 DALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA 267 (281)
Q Consensus 230 ~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~ 267 (281)
+.+....+.+. .+||+|++|+++|+|+...++.+...
T Consensus 348 ~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 348 EILARIRQAPC-PVAVVDEDGRYVGIISRGELLEALAR 384 (386)
T ss_pred HHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHHHHHhc
Confidence 99999888876 67899999999999999999988543
No 200
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.09 E-value=1.9e-05 Score=71.18 Aligned_cols=131 Identities=17% Similarity=0.149 Sum_probs=91.5
Q ss_pred CeEecC-CchHHHHHHHhHhCCCcEeeEee---CCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCC
Q 023512 51 PTFVLS-DTLAVEALQKMVQGKFRHLPVVE---NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSIS 126 (281)
Q Consensus 51 ~~~v~~-~~~l~~a~~~m~~~~~~~~pV~d---~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (281)
...+.. ++++.+...+|.++.++.+||+- .++++|+++.+++...+......... ...... + ..+..
T Consensus 558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~----~~~~~~-~--f~~~~-- 628 (696)
T KOG0475|consen 558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSF----IVTTSI-Y--FNDPS-- 628 (696)
T ss_pred heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhcccccc----ceeccc-c--cCCCC--
Confidence 555544 49999999999999999999983 38999999999997765432211110 000000 0 00000
Q ss_pred ChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHH
Q 023512 127 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILM 197 (281)
Q Consensus 127 ~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~ 197 (281)
+. ...........+++|. ..+.++...++.+-+++.+++-+...+.|..+|++.|+||.+|+++
T Consensus 629 -~~----~~~~~~~~~~lk~il~--~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~~G~l~Giitkkd~l~ 692 (696)
T KOG0475|consen 629 -PS----AVAGIPSRLDLKDILD--MTPFTVTDLTPMETVVDLFRKLGLRQILVTKNGILLGIITKKDCLR 692 (696)
T ss_pred -cc----ccCCCCCCcCceeecc--CCcccccccCcHHHHHHHHHhhCceEEEEccCCeeEeeeehHHHHH
Confidence 00 0011223345677776 6688899999999999999999999999999999999999999984
No 201
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.84 E-value=7.2e-05 Score=44.38 Aligned_cols=46 Identities=26% Similarity=0.395 Sum_probs=41.0
Q ss_pred CCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHH
Q 023512 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYD 95 (281)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~ 95 (281)
++.++++++++.++++.|.+++++.+||+++ ++++|+++..+++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~ 47 (49)
T smart00116 1 DVVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKA 47 (49)
T ss_pred CceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHh
Confidence 3567899999999999999999999999986 899999999998653
No 202
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.74 E-value=0.00019 Score=66.31 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=53.5
Q ss_pred cccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC---CeEEEEEehHHHHHHHHHH
Q 023512 40 ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN---GEVIALLDIAKCLYDAIAR 99 (281)
Q Consensus 40 ~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~---~~~vGvi~~~dll~~~~~~ 99 (281)
.+.|+++|.+++.++..+.|..|.-+.+..+.++.+|++|+ .-++|-+.++.+...+-..
T Consensus 587 ~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~ 649 (931)
T KOG0476|consen 587 TVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRH 649 (931)
T ss_pred EEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhh
Confidence 56799999999999999999999999999888999999984 5799999999988776653
No 203
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.65 E-value=0.00073 Score=59.58 Aligned_cols=83 Identities=22% Similarity=0.188 Sum_probs=63.2
Q ss_pred cCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcE
Q 023512 173 LRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDV 252 (281)
Q Consensus 173 ~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~ 252 (281)
.+..++.|++. |+++..+.. ....... ...+.+ +.....++++++++.+++..+.+.+. -++|+|+ |++
T Consensus 298 ~~~~~~~~~~~----~~~~~~~~~-~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~-~~~ 366 (382)
T TIGR03415 298 RRDTWLFTIDK----QVRRRDAKL-PVQAWAA---EQEVES-LEAAPTVINPDTLMRDVLAARHRTGG-AILLVEN-GRI 366 (382)
T ss_pred cccceeEeecc----ceecccchH-hHhhccc---ccchhh-hcccCcccCCCCcHHHHHHHHhcCCC-CeEEeeC-CeE
Confidence 67788888887 788877764 3333111 123555 45667889999999999999999876 5788885 999
Q ss_pred EEEEEhhhHHHhhh
Q 023512 253 VDVVDVIHITHAAV 266 (281)
Q Consensus 253 ~Gvis~~di~~~~~ 266 (281)
+|+|+..+++.+..
T Consensus 367 ~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 367 VGVIGDDNIYHALL 380 (382)
T ss_pred EEEEeHHHHHHHHh
Confidence 99999999998864
No 204
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.35 E-value=0.0043 Score=54.81 Aligned_cols=140 Identities=9% Similarity=0.060 Sum_probs=84.7
Q ss_pred cEEEEEcCCCcEEEEEehHHHH--------HHHHHhcCCCCcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEe
Q 023512 7 DALLLTDSNALLCGILTDKDIA--------TRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV 78 (281)
Q Consensus 7 ~~~~v~~~~~~~~Gi~t~~d~~--------~~~~~~~~~~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~ 78 (281)
+.+.+.+ +|+++..-+..+++ +.+........=.+++++|.+.......+-+ .+++. ++...+.|+
T Consensus 233 DrI~vl~-~G~iv~~g~~~ei~~~p~~~~~~~~~~~~~~~~~l~a~~~m~~~~~~~~~~~~--~~~~~---~~~~~~~~~ 306 (382)
T TIGR03415 233 NRIAIME-GGRIIQHGTPEEIVLNPANDYVADFVAHTNPLNVLTARSLMRPLTDLEHVDGG--WCVSD---RRDTWLFTI 306 (382)
T ss_pred CEEEEEE-CCEEEEecCHHHHhhCcchHHHHHHhcccCcccceeHHHHhcccccccccCcc--hhhhh---cccceeEee
Confidence 4555666 46777666666654 2222222223335778899543333333333 33333 778888888
Q ss_pred eCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeC
Q 023512 79 ENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTIS 158 (281)
Q Consensus 79 d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~ 158 (281)
++ |+++..+.....- ......+.+ +. .+..+++
T Consensus 307 ~~----~~~~~~~~~~~~~----------------------------------------~~~~~~~~~-~~--~~~~~~~ 339 (382)
T TIGR03415 307 DK----QVRRRDAKLPVQA----------------------------------------WAAEQEVES-LE--AAPTVIN 339 (382)
T ss_pred cc----ceecccchHhHhh----------------------------------------cccccchhh-hc--ccCcccC
Confidence 87 7777655432100 000011222 11 5678899
Q ss_pred CCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHH
Q 023512 159 PTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVI 200 (281)
Q Consensus 159 ~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~ 200 (281)
+++++.+++..+...+.. ++|+++|+++|+|+..+++..+.
T Consensus 340 ~~~~~~~~~~~~~~~~~~-~~v~~~~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 340 PDTLMRDVLAARHRTGGA-ILLVENGRIVGVIGDDNIYHALL 380 (382)
T ss_pred CCCcHHHHHHHHhcCCCC-eEEeeCCeEEEEEeHHHHHHHHh
Confidence 999999999988876655 67777899999999999985543
No 205
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.89 E-value=0.0072 Score=49.56 Aligned_cols=89 Identities=19% Similarity=0.092 Sum_probs=62.1
Q ss_pred cEEEEEeCCeeeEeeeHHHHHH--------HHHhcCCC----CccccccccccCCC----eeeeCCCCHHHHHHHhHhCC
Q 023512 176 SSAVVTVENKPRGILTSKDILM--------RVISQNLP----ADSTLVEKVMTPNP----ECATIDTPIVDALHIMHDGK 239 (281)
Q Consensus 176 ~~~~V~~~~~~~Givt~~di~~--------~~~~~~~~----~~~~~v~~~~~~~~----~~v~~~~~l~~~~~~~~~~~ 239 (281)
+++.|+++|+++-+-+..+++. .++..... .....+.+.+.... -.........+++..+...+
T Consensus 204 dri~vm~~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~ 283 (309)
T COG1125 204 DRIAVMDAGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLARG 283 (309)
T ss_pred ceEEEecCCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcccccccCCccccchhhHHHHHHHHhcC
Confidence 5578888899999999777764 33333311 12223444433221 22445566677899999999
Q ss_pred CCeeeEecCCCcEEEEEEhhhHHHh
Q 023512 240 FLHLPVVDRDGDVVDVVDVIHITHA 264 (281)
Q Consensus 240 ~~~l~Vv~~~~~~~Gvis~~di~~~ 264 (281)
...+||+|++|+++|.+|+.+++..
T Consensus 284 ~~~~~Vvd~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 284 RSVLPVVDEDGRPLGTVTRADLLDE 308 (309)
T ss_pred CceeEEECCCCcEeeEEEHHHHhhh
Confidence 9999999999999999999999864
No 206
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.57 E-value=0.0064 Score=51.36 Aligned_cols=131 Identities=11% Similarity=0.095 Sum_probs=91.0
Q ss_pred CCcEEEEEehHHHHH--------HHHHhcCCCCcccccccccC--CCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeE
Q 023512 15 NALLCGILTDKDIAT--------RVIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEV 83 (281)
Q Consensus 15 ~~~~~Gi~t~~d~~~--------~~~~~~~~~~~~~v~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~ 83 (281)
+|+++-+=|..+|+. ....+.....=.++.++|.+ ..+.-.+...-..++..+...+...+.+++. ++.
T Consensus 240 dG~ivQ~Gtp~eIl~~PAndYV~~Fv~~v~~~~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~ 319 (386)
T COG4175 240 DGEIVQVGTPEEILLNPANDYVRDFVRNVDRSRVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKF 319 (386)
T ss_pred CCeEEEeCCHHHHHcCccHHHHHHHHhcCChhheeeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhccCce
Confidence 477777777776652 22333333334578899984 2233333455567888888887766666664 779
Q ss_pred EEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcH
Q 023512 84 IALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTV 163 (281)
Q Consensus 84 vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l 163 (281)
+|+++..+.... .+ .+++.++.+++++
T Consensus 320 ~g~v~~~~~~~~---------------------------------------------------~~--~~~~~~v~~d~~~ 346 (386)
T COG4175 320 VGVVSIDSLVKA---------------------------------------------------AL--IDDVLTVDADTPL 346 (386)
T ss_pred eeEEeccchhcc---------------------------------------------------cc--cccccccCccchH
Confidence 999998876432 11 1668889999999
Q ss_pred HHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHH
Q 023512 164 LMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV 199 (281)
Q Consensus 164 ~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~ 199 (281)
.+.+....+.+.. ++|+| +++++|+++...++..+
T Consensus 347 ~~~~~~~~~~~~p-~aVvde~~r~vG~i~~~~vl~aL 382 (386)
T COG4175 347 SEILARIRQAPCP-VAVVDEDGRYVGIISRGELLEAL 382 (386)
T ss_pred HHHHHHHhcCCCc-eeEEcCCCcEEEEecHHHHHHHH
Confidence 9999988876655 46666 99999999999998444
No 207
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=94.50 E-value=0.071 Score=48.77 Aligned_cols=120 Identities=14% Similarity=0.177 Sum_probs=91.4
Q ss_pred hcCCCccccccCCCceeEeCCCCcHHH-HHHHHHHcCccEEEEEe---CCeeeEeeeHHHHHHHHHhcCCCCcccccccc
Q 023512 139 MFRPSLSTIIPEKSKVVTISPTDTVLM-ATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQNLPADSTLVEKV 214 (281)
Q Consensus 139 ~~~~~v~~~m~~~~~~~~v~~~~~l~~-~~~~~~~~~~~~~~V~~---~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~ 214 (281)
+....+.++|+|..++.....+..+.. ......+++++++||.+ ...+.|++....+ .+..........++.++
T Consensus 201 l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~--~~~~~~~~~~~~~v~~~ 278 (498)
T KOG2118|consen 201 LTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLL--RLLQVEVPLEPLPVSES 278 (498)
T ss_pred HHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhh--hhhccccccccccchhh
Confidence 344457899998888999999998884 45555678999999999 3345555555555 33332224445677888
Q ss_pred ccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhH
Q 023512 215 MTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHI 261 (281)
Q Consensus 215 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di 261 (281)
+......++.+.++.+.++.+...+.+.+.|.+ ...-+|+++..|+
T Consensus 279 ~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~-~~~~~~~~~l~~~ 324 (498)
T KOG2118|consen 279 ALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN-GHVDIFVLTLEDL 324 (498)
T ss_pred hccccccCCCcccHHHHHHHHhhhhceeEEEec-CCcceeeEeccch
Confidence 878888999999999999999999999888877 5668899999887
No 208
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=93.49 E-value=0.59 Score=38.72 Aligned_cols=86 Identities=17% Similarity=0.209 Sum_probs=58.2
Q ss_pred EEEEEcCCCcEEEEEehHH--------HHHHHHHhc----CCCCcccccccccCCCe----EecCCchHHHHHHHhHhCC
Q 023512 8 ALLLTDSNALLCGILTDKD--------IATRVIARE----LNLEETPVSKVMTRNPT----FVLSDTLAVEALQKMVQGK 71 (281)
Q Consensus 8 ~~~v~~~~~~~~Gi~t~~d--------~~~~~~~~~----~~~~~~~v~dim~~~~~----~v~~~~~l~~a~~~m~~~~ 71 (281)
.+.|.+ +|+++=+=+..+ +++.++..+ ..+...++.+.|.+... .+.....-.+++..+...+
T Consensus 205 ri~vm~-~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~ 283 (309)
T COG1125 205 RIAVMD-AGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLARG 283 (309)
T ss_pred eEEEec-CCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcccccccCCccccchhhHHHHHHHHhcC
Confidence 355666 578888888554 444443222 23344566676655332 2233455677888888999
Q ss_pred CcEeeEeeC-CeEEEEEehHHHHH
Q 023512 72 FRHLPVVEN-GEVIALLDIAKCLY 94 (281)
Q Consensus 72 ~~~~pV~d~-~~~vGvi~~~dll~ 94 (281)
...+||+|+ |+++|.++..+++.
T Consensus 284 ~~~~~Vvd~~g~~~G~vt~~~l~~ 307 (309)
T COG1125 284 RSVLPVVDEDGRPLGTVTRADLLD 307 (309)
T ss_pred CceeEEECCCCcEeeEEEHHHHhh
Confidence 999999985 99999999999875
No 209
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=92.53 E-value=0.15 Score=47.98 Aligned_cols=65 Identities=15% Similarity=0.100 Sum_probs=56.2
Q ss_pred cccccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEec--CCCcEEEEEEhhhHHHhhhchHHHH
Q 023512 208 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVD--RDGDVVDVVDVIHITHAAVATEILL 272 (281)
Q Consensus 208 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~--~~~~~~Gvis~~di~~~~~~~~~~~ 272 (281)
...++++|.+++..+..+.|..|..+.+....++.+|+|+ ++..++|.|+++.+..+..+++.-.
T Consensus 587 ~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~ig~~ 653 (931)
T KOG0476|consen 587 TVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRHIGPE 653 (931)
T ss_pred EEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhhcCcc
Confidence 3578899999999999999999999999998899999999 3356999999999999877765433
No 210
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=84.39 E-value=0.95 Score=41.57 Aligned_cols=124 Identities=19% Similarity=0.145 Sum_probs=82.0
Q ss_pred CCCcccccccccC--CCeEecCCchHH-HHHHHhHhCCCcEeeEeeC--CeEEEEEehHHHHHHHHHHHHHHHHhhhhHH
Q 023512 37 NLEETPVSKVMTR--NPTFVLSDTLAV-EALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEKGKAIA 111 (281)
Q Consensus 37 ~~~~~~v~dim~~--~~~~v~~~~~l~-~a~~~m~~~~~~~~pV~d~--~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~ 111 (281)
.+....++++|++ .+..+..+..+. +......+++++++||.+. ...+|.+=....+... ..
T Consensus 200 ~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~----~~--------- 266 (498)
T KOG2118|consen 200 ELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLL----QV--------- 266 (498)
T ss_pred HHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhh----cc---------
Confidence 4456678999985 666777777776 5555666999999999984 3344432111111110 00
Q ss_pred HHHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeee
Q 023512 112 AAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILT 191 (281)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt 191 (281)
...+...++...+. .+...++.++++.+.++.+...+.+.+.|.+...-.|+++
T Consensus 267 ------------------------~~~~~~~~v~~~~~--~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~~~~~~~~~~ 320 (498)
T KOG2118|consen 267 ------------------------EVPLEPLPVSESAL--LRLPLVPENMPLLDLLNEFQKGKSHMAVVRNGHVDIFVLT 320 (498)
T ss_pred ------------------------ccccccccchhhhc--cccccCCCcccHHHHHHHHhhhhceeEEEecCCcceeeEe
Confidence 00112223344443 6688899999999999999998888888887666789999
Q ss_pred HHHHHHHHH
Q 023512 192 SKDILMRVI 200 (281)
Q Consensus 192 ~~di~~~~~ 200 (281)
..++ ....
T Consensus 321 l~~~-~~~~ 328 (498)
T KOG2118|consen 321 LEDL-EEVV 328 (498)
T ss_pred ccch-hhhc
Confidence 9998 5555
No 211
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=79.34 E-value=7.7 Score=37.03 Aligned_cols=94 Identities=13% Similarity=0.133 Sum_probs=58.1
Q ss_pred HHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCC----cccc-----ccc-cccCCCeeeeCCCCHHHH
Q 023512 163 VLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPA----DSTL-----VEK-VMTPNPECATIDTPIVDA 231 (281)
Q Consensus 163 l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~----~~~~-----v~~-~~~~~~~~v~~~~~l~~~ 231 (281)
+.++.+.+...+ ..++++| +|.++++....+++..+......+ .+.. +.- +....++.+...+...+.
T Consensus 61 l~~l~~~l~~~~-~~~~l~D~~G~vL~~~g~~~~~~~~~~~~~~~G~~w~E~~~GTnaig~al~~~~pv~v~g~EH~~~~ 139 (638)
T PRK11388 61 LEDAWEYMADRE-CALLILDETGCILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTNALSLAAISGQPVKTMGDQHFKQA 139 (638)
T ss_pred HHHHHHHhcCCC-cEEEEEcCCceEEEEeCCHHHHHHHHHcCCccCCccchhccCcCHHHHHHhcCCceEEecHHHHHHh
Confidence 344444555445 6778888 999999999998875443322211 1100 111 122566777766655444
Q ss_pred HHHhHhCCCCeeeEecCCCcEEEEEEhhh
Q 023512 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIH 260 (281)
Q Consensus 232 ~~~~~~~~~~~l~Vv~~~~~~~Gvis~~d 260 (281)
+....+...||.|.+|+++|+++.+-
T Consensus 140 ---~~~~~c~aaPI~d~~G~liGvl~l~~ 165 (638)
T PRK11388 140 ---LHNWAFCATPVFDSKGRLTGTIALAC 165 (638)
T ss_pred ---ccCceEEeeEEEcCCCCEEEEEEEEe
Confidence 44456678999999999999997543
No 212
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=68.49 E-value=9.3 Score=25.31 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=17.5
Q ss_pred CCeeeEecCCCcEEEEEEhhhHHHhhh
Q 023512 240 FLHLPVVDRDGDVVDVVDVIHITHAAV 266 (281)
Q Consensus 240 ~~~l~Vv~~~~~~~Gvis~~di~~~~~ 266 (281)
...+-+++++|+.+|+++..+-++.+.
T Consensus 12 ~~~VrlI~~~g~~lGv~~~~eAl~~A~ 38 (76)
T PF05198_consen 12 APEVRLIDEDGEQLGVMSLREALRLAK 38 (76)
T ss_dssp -SEEEEE-TTS-EEEEEEHHHHHHHHH
T ss_pred CCEEEEECCCCcEeceEEHHHHHHHHH
Confidence 345667777888888888888776643
No 213
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=60.88 E-value=57 Score=29.19 Aligned_cols=142 Identities=15% Similarity=0.134 Sum_probs=72.3
Q ss_pred CcEEEEEehHHHHHHHHHhcCCCCcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHH
Q 023512 16 ALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLY 94 (281)
Q Consensus 16 ~~~~Gi~t~~d~~~~~~~~~~~~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~ 94 (281)
.+=+|++|...++-...+ .+ .+-.++|.=++..+.+-..+.+|+..|.+. +.+ .+|- |+ +..|-..
T Consensus 233 ~~kVaiITtDtYRIGA~E---QL--k~Ya~im~vp~~vv~~~~el~~ai~~l~~~--d~I-LVDTaGr-----s~~D~~~ 299 (407)
T COG1419 233 KKKVAIITTDTYRIGAVE---QL--KTYADIMGVPLEVVYSPKELAEAIEALRDC--DVI-LVDTAGR-----SQYDKEK 299 (407)
T ss_pred CcceEEEEeccchhhHHH---HH--HHHHHHhCCceEEecCHHHHHHHHHHhhcC--CEE-EEeCCCC-----CccCHHH
Confidence 355788887766422211 11 134778888888888888899999999877 334 4462 54 3334321
Q ss_pred HHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcC
Q 023512 95 DAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELR 174 (281)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~ 174 (281)
..++.........+ ......+....+.-+..+-..+...++..++ +.-+++++++..++.+|.+.+
T Consensus 300 --i~el~~~~~~~~~i-------~~~Lvlsat~K~~dlkei~~~f~~~~i~~~I-----~TKlDET~s~G~~~s~~~e~~ 365 (407)
T COG1419 300 --IEELKELIDVSHSI-------EVYLVLSATTKYEDLKEIIKQFSLFPIDGLI-----FTKLDETTSLGNLFSLMYETR 365 (407)
T ss_pred --HHHHHHHHhccccc-------eEEEEEecCcchHHHHHHHHHhccCCcceeE-----EEcccccCchhHHHHHHHHhC
Confidence 12222211111100 0111111111122222222233333444443 344677777777777777777
Q ss_pred ccEEEEEeCC
Q 023512 175 LSSAVVTVEN 184 (281)
Q Consensus 175 ~~~~~V~~~~ 184 (281)
.....|++++
T Consensus 366 ~PV~YvT~GQ 375 (407)
T COG1419 366 LPVSYVTNGQ 375 (407)
T ss_pred CCeEEEeCCC
Confidence 6666666633
No 214
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=58.49 E-value=29 Score=32.00 Aligned_cols=43 Identities=19% Similarity=0.183 Sum_probs=36.2
Q ss_pred chHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHH
Q 023512 58 TLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARM 100 (281)
Q Consensus 58 ~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~ 100 (281)
..++.+.+...+.|=.-++|++++++.|+|..+|+++..+.+.
T Consensus 413 ~~l~~~~~~vs~~GGTPL~V~~~~~~~GVI~LkDivK~Gi~ER 455 (681)
T COG2216 413 EDLDAAVDEVSRLGGTPLVVVENGRILGVIYLKDIVKPGIKER 455 (681)
T ss_pred HHHHHHHHHHHhcCCCceEEEECCEEEEEEEehhhcchhHHHH
Confidence 3467777778888888999999999999999999998777654
No 215
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=57.25 E-value=32 Score=22.74 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCcEEEEEehHHHHHHHHHhcCCCC
Q 023512 6 VDALLLTDSNALLCGILTDKDIATRVIARELNLE 39 (281)
Q Consensus 6 ~~~~~v~~~~~~~~Gi~t~~d~~~~~~~~~~~~~ 39 (281)
...+-|++++|...|+++..+-++..-..+.++.
T Consensus 12 ~~~VrlI~~~g~~lGv~~~~eAl~~A~~~~lDLV 45 (76)
T PF05198_consen 12 APEVRLIDEDGEQLGVMSLREALRLAKEKGLDLV 45 (76)
T ss_dssp -SEEEEE-TTS-EEEEEEHHHHHHHHHHTT-EEE
T ss_pred CCEEEEECCCCcEeceEEHHHHHHHHHHcCCcEE
Confidence 4567788888999999999988755555555543
No 216
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=55.10 E-value=24 Score=33.68 Aligned_cols=79 Identities=18% Similarity=0.228 Sum_probs=48.5
Q ss_pred cEEEEEcCCCcEEEEEehHHHHHHHHHhcCCCCccc-ccccc----------cCCCeEecCCchHHHHHHHhHhCCCcEe
Q 023512 7 DALLLTDSNALLCGILTDKDIATRVIARELNLEETP-VSKVM----------TRNPTFVLSDTLAVEALQKMVQGKFRHL 75 (281)
Q Consensus 7 ~~~~v~~~~~~~~Gi~t~~d~~~~~~~~~~~~~~~~-v~dim----------~~~~~~v~~~~~l~~a~~~m~~~~~~~~ 75 (281)
..+++.|.+|.++.+.+..++++.....+... +.. .++.+ ...++.+....-..+ .+........
T Consensus 73 ~~~~l~D~~G~vL~~~g~~~~~~~~~~~~~~~-G~~w~E~~~GTnaig~al~~~~pv~v~g~EH~~~---~~~~~~c~aa 148 (638)
T PRK11388 73 CALLILDETGCILSRNGDPQTLQQLSALGFND-GTYCAEGIIGTNALSLAAISGQPVKTMGDQHFKQ---ALHNWAFCAT 148 (638)
T ss_pred cEEEEEcCCceEEEEeCCHHHHHHHHHcCCcc-CCccchhccCcCHHHHHHhcCCceEEecHHHHHH---hccCceEEee
Confidence 67888999999999999998875543322221 111 12211 234445544433333 3334456789
Q ss_pred eEeeC-CeEEEEEeh
Q 023512 76 PVVEN-GEVIALLDI 89 (281)
Q Consensus 76 pV~d~-~~~vGvi~~ 89 (281)
||.+. |+++|+|+.
T Consensus 149 PI~d~~G~liGvl~l 163 (638)
T PRK11388 149 PVFDSKGRLTGTIAL 163 (638)
T ss_pred EEEcCCCCEEEEEEE
Confidence 99985 999999963
No 217
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=48.17 E-value=20 Score=25.68 Aligned_cols=17 Identities=53% Similarity=0.827 Sum_probs=13.1
Q ss_pred eeeEecCCCcEEEEEEh
Q 023512 242 HLPVVDRDGDVVDVVDV 258 (281)
Q Consensus 242 ~l~Vv~~~~~~~Gvis~ 258 (281)
..||.|++|+++|+|+.
T Consensus 93 ~~PV~d~~g~viG~V~V 109 (116)
T PF14827_consen 93 FAPVYDSDGKVIGVVSV 109 (116)
T ss_dssp EEEEE-TTS-EEEEEEE
T ss_pred EEeeECCCCcEEEEEEE
Confidence 57999889999999975
No 218
>COG1956 GAF domain-containing protein [Signal transduction mechanisms]
Probab=42.44 E-value=29 Score=26.62 Aligned_cols=19 Identities=32% Similarity=0.702 Sum_probs=16.2
Q ss_pred cEeeEeeCCeEEEEEehHH
Q 023512 73 RHLPVVENGEVIALLDIAK 91 (281)
Q Consensus 73 ~~~pV~d~~~~vGvi~~~d 91 (281)
-.+||+.+|+++|+++...
T Consensus 117 IVvPi~~~g~~iGvlDiDS 135 (163)
T COG1956 117 IVVPIFKDGKLIGVLDIDS 135 (163)
T ss_pred EEEEEEECCEEEEEEecCC
Confidence 3789999999999997754
No 219
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=38.34 E-value=63 Score=20.25 Aligned_cols=40 Identities=15% Similarity=0.053 Sum_probs=32.4
Q ss_pred eCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHH
Q 023512 157 ISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (281)
Q Consensus 157 v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~ 196 (281)
.....++.+.++...+.|.+.+.++|++.+.|.....+..
T Consensus 11 ~~~~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~ 50 (67)
T smart00481 11 LDGALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAA 50 (67)
T ss_pred ccccCCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHH
Confidence 3556789999999999999999999988788876555553
No 220
>CHL00199 infC translation initiation factor 3; Provisional
Probab=38.23 E-value=48 Score=26.07 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=26.9
Q ss_pred CccEEEEEcCCCcEEEEEehHHHHHHHHHhcCCCC
Q 023512 5 RVDALLLTDSNALLCGILTDKDIATRVIARELNLE 39 (281)
Q Consensus 5 ~~~~~~v~~~~~~~~Gi~t~~d~~~~~~~~~~~~~ 39 (281)
+...+-|++++|...|+++..+-++.....+.++.
T Consensus 23 ~~~~VrlI~~~G~~lGv~~~~eAl~~A~~~~lDLV 57 (182)
T CHL00199 23 RFPKVRVIDDSGEQLGIFTSEQAIQLAANQGLDLV 57 (182)
T ss_pred CCCEEEEECCCCcCCCceeHHHHHHHHHHcCCCEE
Confidence 35678888989999999999998866555565553
No 221
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=36.64 E-value=51 Score=30.53 Aligned_cols=40 Identities=18% Similarity=0.220 Sum_probs=32.6
Q ss_pred CCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhh
Q 023512 226 TPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 266 (281)
Q Consensus 226 ~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~ 266 (281)
..++.+.+...+.+=.-++|+. +|++.|+|...|+++-..
T Consensus 413 ~~l~~~~~~vs~~GGTPL~V~~-~~~~~GVI~LkDivK~Gi 452 (681)
T COG2216 413 EDLDAAVDEVSRLGGTPLVVVE-NGRILGVIYLKDIVKPGI 452 (681)
T ss_pred HHHHHHHHHHHhcCCCceEEEE-CCEEEEEEEehhhcchhH
Confidence 3467777777888877888886 899999999999998744
No 222
>PF14044 NETI: NETI protein
Probab=34.13 E-value=48 Score=20.46 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=18.7
Q ss_pred eeeCCCCHHHHHHHhHhCCCCe
Q 023512 221 CATIDTPIVDALHIMHDGKFLH 242 (281)
Q Consensus 221 ~v~~~~~l~~~~~~~~~~~~~~ 242 (281)
.+.++.|+.++++.|.+.++.-
T Consensus 3 eV~enETI~~CL~RM~~eGY~P 24 (57)
T PF14044_consen 3 EVEENETISDCLARMKKEGYMP 24 (57)
T ss_pred eccCCCcHHHHHHHHHHcCCCc
Confidence 4678999999999999998643
No 223
>PRK00028 infC translation initiation factor IF-3; Reviewed
Probab=32.91 E-value=36 Score=26.70 Aligned_cols=36 Identities=11% Similarity=0.194 Sum_probs=20.3
Q ss_pred CCCHHHHHHHhHhCCCCeeeEecCCCc--EEEEEEhhhH
Q 023512 225 DTPIVDALHIMHDGKFLHLPVVDRDGD--VVDVVDVIHI 261 (281)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~l~Vv~~~~~--~~Gvis~~di 261 (281)
-.++.+|++...+.+++-+-| +.+.. ++=+++...+
T Consensus 34 v~~~~eAl~~A~~~~lDLV~v-~~~~~PPVckI~dy~k~ 71 (177)
T PRK00028 34 IVSTREALELAEEAGLDLVEI-SPNAKPPVCKIMDYGKF 71 (177)
T ss_pred ceeHHHHHHHHHHcCCCEEEE-CCCCCCCEEEEEeHHHH
Confidence 346777777777777765544 33332 3444444443
No 224
>TIGR00168 infC translation initiation factor IF-3. render its expression particularly sensitive to excess of its gene product IF-3 thereby regulating its own expression
Probab=31.71 E-value=63 Score=25.00 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=26.5
Q ss_pred CccEEEEEcCCCcEEEEEehHHHHHHHHHhcCCC
Q 023512 5 RVDALLLTDSNALLCGILTDKDIATRVIARELNL 38 (281)
Q Consensus 5 ~~~~~~v~~~~~~~~Gi~t~~d~~~~~~~~~~~~ 38 (281)
+...+-|++++|...|+++..+-++.....+.++
T Consensus 6 ~~~~Vrli~~dG~~lgv~~~~eAl~~A~~~~lDL 39 (165)
T TIGR00168 6 RFNEVRLIDENGEQLGIVSREEALEIAEEAGLDL 39 (165)
T ss_pred CCCEEEEECCCCcCCCcccHHHHHHHHHHcCCcE
Confidence 4567888898999999999999886655555554
No 225
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=31.50 E-value=52 Score=21.46 Aligned_cols=16 Identities=38% Similarity=0.846 Sum_probs=13.3
Q ss_pred eeeEecCCCcEEEEEE
Q 023512 242 HLPVVDRDGDVVDVVD 257 (281)
Q Consensus 242 ~l~Vv~~~~~~~Gvis 257 (281)
..||.+++|+++|++.
T Consensus 18 s~pi~~~~g~~~Gvv~ 33 (81)
T PF02743_consen 18 SVPIYDDDGKIIGVVG 33 (81)
T ss_dssp EEEEEETTTEEEEEEE
T ss_pred EEEEECCCCCEEEEEE
Confidence 4688888899999984
No 226
>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A ....
Probab=30.14 E-value=36 Score=23.77 Aligned_cols=20 Identities=35% Similarity=0.378 Sum_probs=15.9
Q ss_pred HhCCCCeeeEecCCCcEEEE
Q 023512 236 HDGKFLHLPVVDRDGDVVDV 255 (281)
Q Consensus 236 ~~~~~~~l~Vv~~~~~~~Gv 255 (281)
...+.+.-||+|.+|+++||
T Consensus 101 ~~~G~SGgpv~~~~G~vvGi 120 (120)
T PF13365_consen 101 TRPGSSGGPVFDSDGRVVGI 120 (120)
T ss_dssp -STTTTTSEEEETTSEEEEE
T ss_pred cCCCcEeHhEECCCCEEEeC
Confidence 34566788999999999997
No 227
>CHL00199 infC translation initiation factor 3; Provisional
Probab=30.00 E-value=43 Score=26.31 Aligned_cols=19 Identities=11% Similarity=0.074 Sum_probs=11.1
Q ss_pred CHHHHHHHhHhCCCCeeeE
Q 023512 227 PIVDALHIMHDGKFLHLPV 245 (281)
Q Consensus 227 ~l~~~~~~~~~~~~~~l~V 245 (281)
+..+|++...+.+++-+-|
T Consensus 41 ~~~eAl~~A~~~~lDLVeV 59 (182)
T CHL00199 41 TSEQAIQLAANQGLDLVLV 59 (182)
T ss_pred eHHHHHHHHHHcCCCEEEE
Confidence 4566666666666655444
No 228
>PF00944 Peptidase_S3: Alphavirus core protein ; InterPro: IPR000930 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. Togavirin, also known as Sindbis virus core endopeptidase, is a serine protease resident at the N terminus of the p130 polyprotein of togaviruses []. The endopeptidase signature identifies the peptidase as belonging to the MEROPS peptidase family S3 (togavirin family, clan PA(S)). The polyprotein also includes structural proteins for the nucleocapsid core and for the glycoprotein spikes []. Togavirin is only active while part of the polyprotein, cleavage at a Trp-Ser bond resulting in total lack of activity []. Mutagenesis studies have identified the location of the His-Asp-Ser catalytic triad, and X-ray studies have revealed the protein fold to be similar to that of chymotrypsin [, ].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 2YEW_D 1EP5_A 3J0C_F 1EP6_C 1WYK_D 1DYL_A 1VCQ_B 1VCP_B 1LD4_D 1KXA_A ....
Probab=29.27 E-value=55 Score=24.30 Aligned_cols=20 Identities=10% Similarity=0.082 Sum_probs=15.8
Q ss_pred ccEEEEEcCCCcEEEEEehH
Q 023512 6 VDALLLTDSNALLCGILTDK 25 (281)
Q Consensus 6 ~~~~~v~~~~~~~~Gi~t~~ 25 (281)
=+.=|++|++|+++||+--.
T Consensus 107 DSGRpi~DNsGrVVaIVLGG 126 (158)
T PF00944_consen 107 DSGRPIFDNSGRVVAIVLGG 126 (158)
T ss_dssp STTEEEESTTSBEEEEEEEE
T ss_pred CCCCccCcCCCCEEEEEecC
Confidence 34568999999999998543
No 229
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=29.05 E-value=2.7e+02 Score=25.11 Aligned_cols=82 Identities=16% Similarity=0.257 Sum_probs=51.8
Q ss_pred ccEEEEEcCCCcEEEEEehHHHHHHHHHhcCCCCcccccc-cccCCCeEecCCchHHHHHHHhHhCCCcEeeEe--e---
Q 023512 6 VDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSK-VMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV--E--- 79 (281)
Q Consensus 6 ~~~~~v~~~~~~~~Gi~t~~d~~~~~~~~~~~~~~~~v~d-im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~--d--- 79 (281)
++.++|.++ +.|.+|.+|+. .+- ...+.| ++.+.- .+=.+.++.+..+.+ +....+|- |
T Consensus 306 v~v~~v~n~---VagLlTg~Di~-~l~-------~~~~~d~~liP~~-~fldd~t~~~~~~~l---~~~v~v~~~~~~~~ 370 (404)
T TIGR03278 306 VNVVPVKKD---IACLITEDDLE-ELD-------LSEVKETVIIPGR-AFVHDMVAEEILKRD---GVDRIVVRGPDRLT 370 (404)
T ss_pred EEEEEecCc---ccccchHHHHH-Hhc-------CCCCCCEEEecCc-cccccccHHHHHHHh---CCcEEEecCCceee
Confidence 566777764 99999999997 442 122223 233442 233356777766665 55556554 2
Q ss_pred -CCeEEEEEehHHHHHHHHHHHHH
Q 023512 80 -NGEVIALLDIAKCLYDAIARMER 102 (281)
Q Consensus 80 -~~~~vGvi~~~dll~~~~~~~~~ 102 (281)
||+..|..|..+++..-+..+.+
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~ 394 (404)
T TIGR03278 371 ADGEMSGGMTREEVLEFELEAFRE 394 (404)
T ss_pred ecceecccccHHHHHHHHHHHHHH
Confidence 58899999999998765544433
No 230
>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]
Probab=27.87 E-value=79 Score=24.55 Aligned_cols=29 Identities=14% Similarity=0.288 Sum_probs=0.0
Q ss_pred CCCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512 239 KFLHLPVVDRDGDVVDVVDVIHITHAAVA 267 (281)
Q Consensus 239 ~~~~l~Vv~~~~~~~Gvis~~di~~~~~~ 267 (281)
+...+-+++++|+-+|+++..+-++....
T Consensus 17 r~~evrlIg~~GeqlGiv~~~eAL~lA~e 45 (176)
T COG0290 17 RAREVRLIGEDGEQLGIVSIEEALKLAEE 45 (176)
T ss_pred cccEEEEECCCCcEEcceeHHHHHHHHHH
No 231
>PRK03972 ribosomal biogenesis protein; Validated
Probab=27.08 E-value=1.1e+02 Score=24.70 Aligned_cols=36 Identities=17% Similarity=0.139 Sum_probs=28.7
Q ss_pred eeeeCCCCHHHHHHHhHhCCCCeeeEecCC-CcEEEE
Q 023512 220 ECATIDTPIVDALHIMHDGKFLHLPVVDRD-GDVVDV 255 (281)
Q Consensus 220 ~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~-~~~~Gv 255 (281)
..-+...++.++++...+.++..++|++|+ |++-|+
T Consensus 30 ~i~RGk~~lkel~~~A~~~g~TdLIVV~E~rg~P~~L 66 (208)
T PRK03972 30 YLTRGKKTIQDLLMEAYDRGYERLLIINVWKGNPLKM 66 (208)
T ss_pred EEecCCccHHHHHHHHHHCCCCeEEEEecCCCcCCeE
Confidence 445568899999999999999999999976 444444
No 232
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=26.39 E-value=2.3e+02 Score=19.82 Aligned_cols=97 Identities=13% Similarity=0.104 Sum_probs=49.6
Q ss_pred CCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHHHH---Hh
Q 023512 160 TDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALH---IM 235 (281)
Q Consensus 160 ~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~---~~ 235 (281)
+.+..+|++...+.+-..++... ++.. ....+.+..+. +..+.++++.+.+.+..+.+-.+..+ .+
T Consensus 3 ~gs~~~a~~~Ak~~~K~llv~~~~~~c~----~c~~~~~~vl~------~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~ 72 (114)
T cd02958 3 QGSFEDAKQEAKSEKKWLLVYLQSEDEF----DSQVLNRDLWS------NESVKEFIRENFIFWQCDIDSSEGQRFLQSY 72 (114)
T ss_pred cCCHHHHHHHHHhhCceEEEEEecCCcc----hHHHHHHHHcC------CHHHHHHHHhCEEEEEecCCCccHHHHHHHh
Confidence 35678888888776443333333 3221 22222212221 12355555555554444433223333 33
Q ss_pred HhCCCCeeeEecC-CCcEE----EEEEhhhHHHhhh
Q 023512 236 HDGKFLHLPVVDR-DGDVV----DVVDVIHITHAAV 266 (281)
Q Consensus 236 ~~~~~~~l~Vv~~-~~~~~----Gvis~~di~~~~~ 266 (281)
.-.+...+.+++. +|+++ |.++..+++....
T Consensus 73 ~~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~ 108 (114)
T cd02958 73 KVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLI 108 (114)
T ss_pred CccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHH
Confidence 4445666777887 67755 7777777776544
No 233
>PF12282 H_kinase_N: Signal transduction histidine kinase; InterPro: IPR022066 This domain is found in bacteria. This domain is about 150 amino acids in length. This domain is found associated with PF07568 from PFAM, PF08448 from PFAM, PF02518 from PFAM. This domain has a single completely conserved residue P that may be functionally important. This family is mostly annotated as a histidine kinase involved in signal transduction but there is little published evidence to support this. ; PDB: 2YKH_B 2YKF_A.
Probab=25.98 E-value=79 Score=23.80 Aligned_cols=18 Identities=39% Similarity=0.499 Sum_probs=15.7
Q ss_pred CcEeeEeeCCeEEEEEeh
Q 023512 72 FRHLPVVENGEVIALLDI 89 (281)
Q Consensus 72 ~~~~pV~d~~~~vGvi~~ 89 (281)
...+||.++++++|+|..
T Consensus 106 ~~~~PI~~~~~vIaVl~~ 123 (145)
T PF12282_consen 106 QEVVPIRRNGRVIAVLIR 123 (145)
T ss_dssp EEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEECCEEEEEEEE
Confidence 468899999999999984
No 234
>PRK00028 infC translation initiation factor IF-3; Reviewed
Probab=25.41 E-value=1e+02 Score=24.16 Aligned_cols=35 Identities=17% Similarity=0.232 Sum_probs=27.1
Q ss_pred CccEEEEEcCCCcEEEEEehHHHHHHHHHhcCCCC
Q 023512 5 RVDALLLTDSNALLCGILTDKDIATRVIARELNLE 39 (281)
Q Consensus 5 ~~~~~~v~~~~~~~~Gi~t~~d~~~~~~~~~~~~~ 39 (281)
+...+-|++++|...|+++..+.++..-..+.++.
T Consensus 18 ~~~~Vrli~~dG~~lgv~~~~eAl~~A~~~~lDLV 52 (177)
T PRK00028 18 RAREVRLIGDDGEQLGIVSTREALELAEEAGLDLV 52 (177)
T ss_pred CCCEEEEECCCCcCCCceeHHHHHHHHHHcCCCEE
Confidence 35678888989999999999998866655566553
No 235
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=25.29 E-value=85 Score=20.01 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=15.9
Q ss_pred CCCeeeEecCCCcEEEEEEhh
Q 023512 239 KFLHLPVVDRDGDVVDVVDVI 259 (281)
Q Consensus 239 ~~~~l~Vv~~~~~~~Gvis~~ 259 (281)
|-=++-|++++|+++|.+.++
T Consensus 44 G~WrV~V~~~~G~~l~~~~F~ 64 (66)
T PF11141_consen 44 GDWRVEVVDEDGQVLGSLRFS 64 (66)
T ss_pred cCEEEEEEcCCCCEEEEEEEE
Confidence 333577889999999988753
No 236
>PF03948 Ribosomal_L9_C: Ribosomal protein L9, C-terminal domain; InterPro: IPR020069 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L9 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L9 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins grouped on the basis of sequence similarities [, ]. The crystal structure of Bacillus stearothermophilus L9 shows the 149-residue protein comprises two globular domains connected by a rigid linker []. Each domain contains an rRNA binding site, and the protein functions as a structural protein in the large subunit of the ribosome. The C-terminal domain consists of two loops, an alpha-helix and a three-stranded mixed parallel, anti-parallel beta-sheet packed against the central alpha-helix. The long central alpha-helix is exposed to solvent in the middle and participates in the hydrophobic cores of the two domains at both ends. ; PDB: 3D5B_I 3PYV_H 3F1H_I 3PYR_H 3MRZ_H 1VSP_G 3MS1_H 1VSA_G 3PYT_H 2WH4_I ....
Probab=24.49 E-value=59 Score=22.05 Aligned_cols=28 Identities=29% Similarity=0.476 Sum_probs=21.4
Q ss_pred CCCcEEEEEehHHHHHHHHHh-cCCCCcc
Q 023512 14 SNALLCGILTDKDIATRVIAR-ELNLEET 41 (281)
Q Consensus 14 ~~~~~~Gi~t~~d~~~~~~~~-~~~~~~~ 41 (281)
++|+++|=+|..||...+... +..++..
T Consensus 24 ~~gklfGSVt~~dIa~~l~~~~g~~Idk~ 52 (87)
T PF03948_consen 24 ENGKLFGSVTSKDIAKALKEQTGIEIDKK 52 (87)
T ss_dssp SCSSBSSEBSHHHHHHHHHHCCSSSSSSS
T ss_pred CCcceecCcCHHHHHHHHHHhhCCeEecc
Confidence 468999999999998777666 5555433
No 237
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=23.57 E-value=1.3e+02 Score=28.53 Aligned_cols=82 Identities=18% Similarity=0.241 Sum_probs=48.5
Q ss_pred cEEEEEcCCCcEEEEEeh----HHHHHHHHHhcCCCCccccccc------ccCCCeEecCCchHHHHHHHhHhCCCcEee
Q 023512 7 DALLLTDSNALLCGILTD----KDIATRVIARELNLEETPVSKV------MTRNPTFVLSDTLAVEALQKMVQGKFRHLP 76 (281)
Q Consensus 7 ~~~~v~~~~~~~~Gi~t~----~d~~~~~~~~~~~~~~~~v~di------m~~~~~~v~~~~~l~~a~~~m~~~~~~~~p 76 (281)
.++.+.|..|..++.... .++.+.-+..|..+++..+.-= ...+++++.-++-...+..- -.....|
T Consensus 88 ~~vLLtD~~GViL~~~G~~~~~~~~rk~gl~~Ga~WSE~~~GTNgIGTcLve~~aVtI~~~qHF~~~~~~---lsCsAaP 164 (606)
T COG3284 88 CCVLLTDADGVILERRGDPRDDEDFRKAGLWLGAVWSEPREGTNGIGTCLVEGEAVTIHGDQHFIQAHHG---LSCSAAP 164 (606)
T ss_pred eEEEEEcCceeEEEeecChhhhhhhhhhccccccccccccccccchhhhhccCcceEEehhhhHhhcccC---ceeeeec
Confidence 356778888888888877 2332222234444544333221 23466666655544333222 2356889
Q ss_pred EeeC-CeEEEEEehHH
Q 023512 77 VVEN-GEVIALLDIAK 91 (281)
Q Consensus 77 V~d~-~~~vGvi~~~d 91 (281)
|.|. |+++|+++.+.
T Consensus 165 I~D~qG~L~gVLDISs 180 (606)
T COG3284 165 IFDEQGELVGVLDISS 180 (606)
T ss_pred cccCCCcEEEEEEecc
Confidence 9996 99999997763
No 238
>PHA00673 acetyltransferase domain containing protein
Probab=23.32 E-value=1.4e+02 Score=22.73 Aligned_cols=34 Identities=21% Similarity=0.174 Sum_probs=27.6
Q ss_pred CCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhh
Q 023512 226 TPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVI 259 (281)
Q Consensus 226 ~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~ 259 (281)
.+-..+++.+.+.+-..+.|..++|+++|.+...
T Consensus 40 ~~y~~af~ai~~dp~~~llVa~~~g~vVG~~~l~ 73 (154)
T PHA00673 40 APDHHAYAGMEAAGVAHFLGVFRGEELVGFACLL 73 (154)
T ss_pred chhHHHHHHHHhCCCcEEEEEEECCEEEEEEEEE
Confidence 5667789999999988998887789999966543
No 239
>PF04352 ProQ: ProQ/FINO family; InterPro: IPR016103 This entry represents a structural domain consisting of six helices in an irregular non-globular array; it also contains two small beta-hairpins. This domain is found in the RNA-binding fertility inhibitor FinO that represses the conjugative transfer of F-like plasmids in Escherichia coli. FinO blocks the translation of TraJ, a positive activator of transcription of gene thereby protecting it from degradation, and catalyses FinP-TraJ mRNA hybridization. Interactions between these two RNAs are predicted to block the TraJ ribosomal binding site. FinO is largely helical, binds to its highest affinity binding site within FinP as a monomer, and contains two distinct RNA binding regions []. This entry also includes ProQ, which is required for full activation of the osmoprotectant transporter ProP in Escherichia coli [].; PDB: 3MW6_C 1DVO_A.
Probab=21.13 E-value=1.8e+02 Score=20.87 Aligned_cols=33 Identities=24% Similarity=0.148 Sum_probs=21.6
Q ss_pred EecCCCcEEEEEEhhhHHHhhhchHHHHHHHHH
Q 023512 245 VVDRDGDVVDVVDVIHITHAAVATEILLDQIMR 277 (281)
Q Consensus 245 Vv~~~~~~~Gvis~~di~~~~~~~~~~~~~~~~ 277 (281)
=+|=+|+++|-||-.+-..+...-.....+...
T Consensus 76 R~dL~G~p~g~Vt~e~~~~A~~~l~~~~~~~~~ 108 (114)
T PF04352_consen 76 RYDLDGQPVGEVTEEHAEHARERLKERKKKRKK 108 (114)
T ss_dssp EE-TTS-EEEEE-HHHHHHHHCCHHHHHHHHHH
T ss_pred eECCCCCCCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 347789999999999999987765444444333
No 240
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=20.53 E-value=1.7e+02 Score=20.09 Aligned_cols=31 Identities=13% Similarity=0.128 Sum_probs=20.7
Q ss_pred HHHHHHhHhCCCCeeeEecCCCcEEEEEEhh
Q 023512 229 VDALHIMHDGKFLHLPVVDRDGDVVDVVDVI 259 (281)
Q Consensus 229 ~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~ 259 (281)
.+.++.+.+.+...+.|..++|+++|.+...
T Consensus 32 ~~~~~~~~~~~~~~~~v~~~~~~ivG~~~~~ 62 (117)
T PF13673_consen 32 PEDLEEYLEEGSHTIFVAEEGGEIVGFAWLE 62 (117)
T ss_dssp HHHHHHHHCTCCCEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHHHHhcCCEEEEEEECCEEEEEEEEc
Confidence 3344555555445666777789999999865
Done!