BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023513
(281 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B0SR27|GMHA_LEPBP Phosphoheptose isomerase OS=Leptospira biflexa serovar Patoc
(strain Patoc 1 / ATCC 23582 / Paris) GN=gmhA PE=3 SV=1
Length = 195
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 209 STKDDSRRVASTLFPSLCSQLKRKK----DHGKADAVLIAAYGKGLKLDSSHLSGELV 262
S +DS RV + L PSL +K D K D +L A G D+SH++ ELV
Sbjct: 9 SQIEDSIRVKAQLLPSLLPNIKAAGKVLVDSLKGDGILYFAGNGGSSCDASHIAAELV 66
>sp|B0SHL8|GMHA_LEPBA Phosphoheptose isomerase OS=Leptospira biflexa serovar Patoc
(strain Patoc 1 / Ames) GN=gmhA PE=3 SV=1
Length = 195
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 209 STKDDSRRVASTLFPSLCSQLKRKK----DHGKADAVLIAAYGKGLKLDSSHLSGELV 262
S +DS RV + L PSL +K D K D +L A G D+SH++ ELV
Sbjct: 9 SQIEDSIRVKAQLLPSLLPNIKAAGKVLVDSLKGDGILYFAGNGGSSCDASHIAAELV 66
>sp|A5FN16|RS4_FLAJ1 30S ribosomal protein S4 OS=Flavobacterium johnsoniae (strain ATCC
17061 / DSM 2064 / UW101) GN=rpsD PE=3 SV=1
Length = 201
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 24/132 (18%)
Query: 39 RTLLVRAAAAGDTTKAAVAAQMKQNWLDSLTFPPLHVHDLTANQTNADSQWALGIDPDLS 98
R L +A+A T V Q+ + LD++ F +GI P
Sbjct: 70 RNLFEKASATKGVT-GEVLLQLCEARLDNVVF-------------------RMGIAPSRR 109
Query: 99 GALAVLKSDHNGCSAEVFDTPHLPVLVGKRVRKRLDAKSMIMLLRSLDAPIGTTAYVEQS 158
GA ++ H + EV + P + G +V R +KS+ + RSL +++V +
Sbjct: 110 GARQIVSHRHITVNGEVVNIPSYHLKPGDKVAVREKSKSLEAIERSLS----NSSHVYEW 165
Query: 159 IPYPQDGKQGWW 170
I + D K+G +
Sbjct: 166 ITWNNDLKEGTF 177
>sp|Q3AVJ1|SYFB_SYNS9 Phenylalanine--tRNA ligase beta subunit OS=Synechococcus sp.
(strain CC9902) GN=pheT PE=3 SV=1
Length = 807
Score = 32.0 bits (71), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 13/104 (12%)
Query: 19 NTFVSSKIRTLCTYPFAQ----HGRTLLVRAAAAGDTTKAAVAAQMKQNWLDSLTFPPLH 74
TF+ ++LC P Q H R + + A + +AV+ + WL+S F P+
Sbjct: 293 ETFIGLDDQSLCLDPRVQVVTCHDRAIAI--AGVMGSRDSAVSDSTTKIWLESAMFSPIR 350
Query: 75 VHDLTAN---QTNADSQWALGIDPDLSGALA----VLKSDHNGC 111
V + +T+A S++ G+ P+++ A + L SD C
Sbjct: 351 VRQSSRAVGLRTDASSRFEKGLPPEVTLACSQRAIELLSDQFAC 394
>sp|P10121|FTSY_ECOLI Signal recognition particle receptor FtsY OS=Escherichia coli
(strain K12) GN=ftsY PE=1 SV=1
Length = 497
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 17/124 (13%)
Query: 34 FAQHGRTLLVRAAAAGDTTKAAVAAQMKQNWLDSLTFPPLHVHDLTANQTNADSQWAL-- 91
F Q G+++++ AAGDT +AA Q+ Q W P + A T ADS +
Sbjct: 317 FEQQGKSVML---AAGDTFRAAAVEQL-QVWGQRNNIP------VIAQHTGADSASVIFD 366
Query: 92 GIDPDLSGALAVLKSDHNGCSAEVFDTPHLPVLVGK--RVRKRLDAKSMIMLLRSLDAPI 149
I + + VL +D G + + HL + K RV K+LD ++ ++ ++DA
Sbjct: 367 AIQAAKARNIDVLIADTAG---RLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAST 423
Query: 150 GTTA 153
G A
Sbjct: 424 GQNA 427
>sp|B0CCD5|MURB_ACAM1 UDP-N-acetylenolpyruvoylglucosamine reductase OS=Acaryochloris
marina (strain MBIC 11017) GN=murB PE=3 SV=1
Length = 308
Score = 31.2 bits (69), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 88 QWALGIDPDLSGALAVLKSDHNGCSAEVFDTPH 120
+WA+GI + GAL + H GC+A+V H
Sbjct: 123 EWAVGIPGTVGGALVMNAGAHGGCTADVLTEVH 155
>sp|A9GFW6|HUTH_SORC5 Histidine ammonia-lyase OS=Sorangium cellulosum (strain So ce56)
GN=hutH PE=3 SV=1
Length = 514
Score = 31.2 bits (69), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 11/73 (15%)
Query: 76 HDLTANQTNADSQWALGIDPDLSG----ALAVLKSD-----HNGCSAEVFDTPHLPVLVG 126
HD+ A Q N A G+ P+L A+ VL++ H+G EV D L L+
Sbjct: 70 HDIRALQRNLVRSHACGVGPELGEAEVRAMIVLRAQVIALGHSGVRTEVLDL--LAALLE 127
Query: 127 KRVRKRLDAKSMI 139
+RV R+ A+ +
Sbjct: 128 RRVSPRIPAQGSV 140
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,972,356
Number of Sequences: 539616
Number of extensions: 4390621
Number of successful extensions: 10535
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 10532
Number of HSP's gapped (non-prelim): 8
length of query: 281
length of database: 191,569,459
effective HSP length: 116
effective length of query: 165
effective length of database: 128,974,003
effective search space: 21280710495
effective search space used: 21280710495
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)