Query 023513
Match_columns 281
No_of_seqs 122 out of 209
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 08:07:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023513.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023513hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ep4_A Crossover junction endo 100.0 1.6E-43 5.4E-48 306.2 14.4 156 88-252 1-159 (166)
2 1hjr_A Holliday junction resol 100.0 4.7E-43 1.6E-47 300.5 15.5 150 88-250 1-152 (158)
3 1vhx_A Putative holliday junct 99.2 7.8E-11 2.7E-15 99.5 10.0 104 88-204 3-111 (150)
4 1kcf_A Hypothetical 30.2 KD pr 97.5 0.00037 1.3E-08 63.8 9.8 157 89-248 41-239 (258)
5 1iv0_A Hypothetical protein; r 95.0 0.11 3.6E-06 40.7 8.1 90 88-194 1-92 (98)
6 3bzc_A TEX; helix-turn-helix, 95.0 0.037 1.3E-06 57.6 7.0 80 56-157 309-391 (785)
7 1nu0_A Hypothetical protein YQ 94.4 0.3 1E-05 40.4 9.8 99 89-202 4-107 (138)
8 3cpe_A Terminase, DNA packagin 89.6 1 3.5E-05 44.4 8.6 23 232-254 563-585 (592)
9 3psf_A Transcription elongatio 82.6 2.5 8.6E-05 45.3 7.5 87 55-156 491-585 (1030)
10 3psi_A Transcription elongatio 82.3 2.4 8.2E-05 46.3 7.4 87 55-156 488-582 (1219)
11 3r6m_A YEAZ, resuscitation pro 61.1 70 0.0024 27.8 10.4 95 87-198 1-98 (213)
12 4ehu_A Activator of 2-hydroxyi 59.6 14 0.00049 31.8 5.6 21 88-108 1-22 (276)
13 3en9_A Glycoprotease, O-sialog 58.7 47 0.0016 32.0 9.7 102 87-197 5-113 (540)
14 2qm1_A Glucokinase; alpha-beta 43.3 22 0.00075 31.2 4.2 26 84-109 2-28 (326)
15 2ivn_A O-sialoglycoprotein end 41.4 1.1E+02 0.0039 27.5 8.8 19 88-106 1-20 (330)
16 3eno_A Putative O-sialoglycopr 39.1 79 0.0027 28.9 7.4 102 86-197 4-114 (334)
17 3g25_A Glycerol kinase; IDP007 35.7 56 0.0019 31.1 6.0 27 83-109 1-28 (501)
18 2gel_A Putative GRAM negative 34.5 1.1E+02 0.0037 26.5 7.2 93 89-198 2-97 (231)
19 3c6a_A Terminase large subunit 32.4 55 0.0019 29.0 5.0 19 232-250 203-221 (232)
20 2a6a_A Hypothetical protein TM 26.5 3.1E+02 0.011 23.6 10.0 95 88-199 12-109 (218)
21 1hux_A Activator of (R)-2-hydr 20.1 60 0.002 28.4 2.9 22 87-108 2-24 (270)
No 1
>4ep4_A Crossover junction endodeoxyribonuclease RUVC; resolvase, hydrolase; 1.28A {Thermus thermophilus} PDB: 4ep5_A
Probab=100.00 E-value=1.6e-43 Score=306.19 Aligned_cols=156 Identities=15% Similarity=0.116 Sum_probs=139.2
Q ss_pred ceEEEEcCCCC-ceEEEEeeCCCc-ceeEEeecCCcccccccchhhhhcHHHHHHHHHhhcC-CCCCEEEEccccCCCCC
Q 023513 88 QWALGIDPDLS-GALAVLKSDHNG-CSAEVFDTPHLPVLVGKRVRKRLDAKSMIMLLRSLDA-PIGTTAYVEQSIPYPQD 164 (281)
Q Consensus 88 ~iILGIDPGl~-gGyaVLe~~g~~-~~~~vvd~p~i~~~~~~~l~~rl~~~~I~~lL~~l~~-~~Pd~aaVE~vf~ffgq 164 (281)
|+|||||||++ .||||++.++++ -.+.++++|+++++.+.++.+|+ ..|++.|.+++. |+||.++||++| |++
T Consensus 1 MrILGIDPGl~~tG~gvi~~~g~~~~~~~~v~~G~I~t~~~~~~~~RL--~~I~~~l~~~i~~~~Pd~vaiE~~F--~~~ 76 (166)
T 4ep4_A 1 MVVAGIDPGITHLGLGVVAVEGKGALKARLLHGEVVKTSPQEPAKERV--GRIHARVLEVLHRFRPEAVAVEEQF--FYR 76 (166)
T ss_dssp CEEEEEECCSSEEEEEEEEECSSSSSCEEEEEEEEEECCTTSCHHHHH--HHHHHHHHHHHHHHCCSEEEEECCC--CSS
T ss_pred CEEEEEccccCceEEEEEEecCCccceEEEEEeCeEECCCCCCHHHHH--HHHHHHHHHHHHHhCCCEEEEeehh--hcc
Confidence 68999999999 499999988741 14678999999888888888866 899999999888 999999999987 899
Q ss_pred CchhhhHHHhhHHHHHHHHHHcCCceeeeChhhHHHHhcCCCCCCCHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHH
Q 023513 165 GKQGWWSGGFGYGLWIGILVASGFSVVPIPSLTWKNWYGLSGGTSTKDDSRRVASTLFPSLCSQLKRKKDHGKADAVLIA 244 (281)
Q Consensus 165 NvqSA~~vG~ArGVillala~~GIPV~EytP~qwKkaVg~s~G~A~KeQVq~MV~~LLp~~~~~L~~kk~ddaADALAIA 244 (281)
|++|++++||+|||++++++++||||+||+|++||++++|+ |+|+|+||+.||+++|+..+ .|++||+|||||||
T Consensus 77 n~~sal~lgqarGv~~la~~~~glpv~eytP~~vKkavtG~-G~A~K~QV~~mV~~lL~l~~----~p~~~DaADALAiA 151 (166)
T 4ep4_A 77 QNELAYKVGWALGAVLVAAFEAGVPVYAYGPMQVKQALAGH-GHAAKEEVALMVRGILGLKE----APRPSHLADALAIA 151 (166)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHTCCEEEECHHHHHHHHHSS-TTCCHHHHHHHHHHHTTCSS----CCSSHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCCEEEECHHHHHHHhcCC-CCCCHHHHHHHHHHHhcCCC----CCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999666 99999999999999998754 26778899999999
Q ss_pred HHcccccc
Q 023513 245 AYGKGLKL 252 (281)
Q Consensus 245 ~~g~~~~~ 252 (281)
+||.....
T Consensus 152 ich~~~~~ 159 (166)
T 4ep4_A 152 LTHAFYAR 159 (166)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99987533
No 2
>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6
Probab=100.00 E-value=4.7e-43 Score=300.46 Aligned_cols=150 Identities=17% Similarity=0.105 Sum_probs=136.6
Q ss_pred ceEEEEcCCCCc-eEEEEeeCCCcceeEEeecCCcccccccchhhhhcHHHHHHHHHhhcC-CCCCEEEEccccCCCCCC
Q 023513 88 QWALGIDPDLSG-ALAVLKSDHNGCSAEVFDTPHLPVLVGKRVRKRLDAKSMIMLLRSLDA-PIGTTAYVEQSIPYPQDG 165 (281)
Q Consensus 88 ~iILGIDPGl~g-GyaVLe~~g~~~~~~vvd~p~i~~~~~~~l~~rl~~~~I~~lL~~l~~-~~Pd~aaVE~vf~ffgqN 165 (281)
|+|||||||++. ||||++.+|+ .+.++++|+++++ +.++..|+ ..|++.|.+++. |+||.++||++| |++|
T Consensus 1 m~ILGIDPGl~~tG~gvi~~~g~--~~~~v~~G~i~t~-~~~~~~Rl--~~i~~~l~~~i~~~~Pd~vaiE~vf--~~~n 73 (158)
T 1hjr_A 1 AIILGIDPGSRVTGYGVIRQVGR--QLSYLGSGCIRTK-VDDLPSRL--KLIYAGVTEIITQFQPDYFAIEQVF--MAKN 73 (158)
T ss_dssp CEEEEEECCSSEEEEEEEEEETT--EEEEEEEEEEECC-CSCHHHHH--HHHHHHHHHHHHHHCCSEEEEEECC--CCCC
T ss_pred CEEEEEccCCCCeeEEEEEecCC--eEEEEEeeEEECC-CCCHHHHH--HHHHHHHHHHHHHcCCCEEEEeecc--cccC
Confidence 679999999985 9999999888 8999999999887 67777765 888888888888 889999999987 8999
Q ss_pred chhhhHHHhhHHHHHHHHHHcCCceeeeChhhHHHHhcCCCCCCCHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHHH
Q 023513 166 KQGWWSGGFGYGLWIGILVASGFSVVPIPSLTWKNWYGLSGGTSTKDDSRRVASTLFPSLCSQLKRKKDHGKADAVLIAA 245 (281)
Q Consensus 166 vqSA~~vG~ArGVillala~~GIPV~EytP~qwKkaVg~s~G~A~KeQVq~MV~~LLp~~~~~L~~kk~ddaADALAIA~ 245 (281)
++|++++||+||+++++++.+||||+||+|++|||+++|+ |+|+|+||+.||+++|+..+ .|++ |+|||||||+
T Consensus 74 ~~s~~~lgqarGv~~~a~~~~~ipv~eytp~~vKkavtG~-G~A~K~qV~~mv~~ll~l~~----~p~~-DaADALAiAi 147 (158)
T 1hjr_A 74 ADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGI-GSAEKSQVQHMVRTLLKLPA----NPQA-DAADALAIAI 147 (158)
T ss_dssp TTTHHHHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHTSS-SSCCHHHHHHHHHHHTTCCC----CCSS-CTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCCEEEECHHHHHHHhhCC-CCCcHHHHHHHHHHHcCCCC----CCCC-CHHHHHHHHH
Confidence 9999999999999999999999999999999999999666 99999999999999998764 2556 8999999999
Q ss_pred Hcccc
Q 023513 246 YGKGL 250 (281)
Q Consensus 246 ~g~~~ 250 (281)
||...
T Consensus 148 ~h~~~ 152 (158)
T 1hjr_A 148 THCHV 152 (158)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99764
No 3
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=99.19 E-value=7.8e-11 Score=99.53 Aligned_cols=104 Identities=8% Similarity=-0.090 Sum_probs=76.5
Q ss_pred ceEEEEcCCCC-ceEEEEeeCCCcceeEEeecCCcccccccchhhhhcHHHHHHHHHhhcCCCCCEEEEccccCCCCCCc
Q 023513 88 QWALGIDPDLS-GALAVLKSDHNGCSAEVFDTPHLPVLVGKRVRKRLDAKSMIMLLRSLDAPIGTTAYVEQSIPYPQDGK 166 (281)
Q Consensus 88 ~iILGIDPGl~-gGyaVLe~~g~~~~~~vvd~p~i~~~~~~~l~~rl~~~~I~~lL~~l~~~~Pd~aaVE~vf~ffgqNv 166 (281)
|.|||||||++ +||||++..+.. ....+++... ..++.. +++.|.+++.+ |+|+.++||..+ ..|-
T Consensus 3 mriLGiDpG~~riGvAv~d~~g~~----a~p~~~I~~~-~~r~~~--~~~~l~~li~~---~~~~~ivVGlP~---~~nG 69 (150)
T 1vhx_A 3 LRILGLDLGTKTLGVALSDEMGWT----AQGIETIKIN-EAEGDY--GLSRLSELIKD---YTIDKIVLGFPK---NMNG 69 (150)
T ss_dssp EEEEEEEECSSEEEEEEECTTSSS----EEEEEEEECB-GGGTBC--CHHHHHHHHTT---SEEEEEEEECCC---CBTT
T ss_pred CEEEEEEccCCEEEEEEEECCCCE----EeeEEEEEcC-CcchHH--HHHHHHHHHHH---cCCCEEEEeeee---cCCc
Confidence 67999999999 599999987752 1123444321 112222 44556666655 459999999974 4455
Q ss_pred hhhhHHHhhHHHHHHHHHHcCCceee----eChhhHHHHhcC
Q 023513 167 QGWWSGGFGYGLWIGILVASGFSVVP----IPSLTWKNWYGL 204 (281)
Q Consensus 167 qSA~~vG~ArGVillala~~GIPV~E----ytP~qwKkaVg~ 204 (281)
++....+++++++..+....++||++ |||.+.|+.+..
T Consensus 70 t~~~~~~~ar~f~~~L~~~~~lpV~~vDEr~Ts~~Ak~~l~~ 111 (150)
T 1vhx_A 70 TVGPRGEASQTFAKVLETTYNVPVVLWDERLTTMAAEKMLIA 111 (150)
T ss_dssp BCCHHHHHHHHHHHHHHHHHCSCEEEECCSSCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhhCCCEEEecCCCCHHHHHHHHHH
Confidence 66788999999998888888999999 999999999943
No 4
>1kcf_A Hypothetical 30.2 KD protein C25G10.02 in chromosome I; beta-alpha-beta motif, RUVC resolvase family, hydrolase; 2.30A {Schizosaccharomyces pombe} SCOP: a.140.2.1 c.55.3.7
Probab=97.53 E-value=0.00037 Score=63.76 Aligned_cols=157 Identities=13% Similarity=0.053 Sum_probs=90.0
Q ss_pred eEEEEcCCCCc-eEEEEeeCCCcc----eeEEeecCCcc-c--ccccchhhhhcHHHHHHHHHhhcC-CCCCEEEEcccc
Q 023513 89 WALGIDPDLSG-ALAVLKSDHNGC----SAEVFDTPHLP-V--LVGKRVRKRLDAKSMIMLLRSLDA-PIGTTAYVEQSI 159 (281)
Q Consensus 89 iILGIDPGl~g-GyaVLe~~g~~~----~~~vvd~p~i~-~--~~~~~l~~rl~~~~I~~lL~~l~~-~~Pd~aaVE~vf 159 (281)
.|++||.|+.. +|+.++..+... ..+.++..... + ..+............+.++..+.. +.||++.||+.-
T Consensus 41 sIlSID~GikNlAyc~l~~~~~~~p~l~~W~kl~l~~~~~~~~~~k~~~~p~~~~~~a~~Li~~ll~~~~pd~vlIErQr 120 (258)
T 1kcf_A 41 RVLGIDLGIKNFSYCFASQNEDSKVIIHNWSVENLTEKNGLDIQWTEDFQPSSMADLSIQLFNTLHEKFNPHVILMERQR 120 (258)
T ss_dssp SEEEEEECSTTEEEEEEEECTTSCEEEEEEEEECTTSCCTTCCCCCCCCSHHHHHHHHHHHHHHHHHHHCCSEEEEEECC
T ss_pred cEEEEecCCCceEEEEEccCCCCCCeeecceeeccccccccccccccCcChHHHHHHHHHHHHHhhccCCCCEEEEeecC
Confidence 59999999996 999998532211 34444433211 0 001222212233455666666544 779999999985
Q ss_pred CCCCCCchhhh-----HHHhhHHHHHHHHHH----------cCCceeeeChhhHHHHhc----CCCCCCCHHHHHHHHHH
Q 023513 160 PYPQDGKQGWW-----SGGFGYGLWIGILVA----------SGFSVVPIPSLTWKNWYG----LSGGTSTKDDSRRVAST 220 (281)
Q Consensus 160 ~ffgqNvqSA~-----~vG~ArGVillala~----------~GIPV~EytP~qwKkaVg----~s~G~A~KeQVq~MV~~ 220 (281)
+.-+ .+++ .++---|.+..++.. ....|..+.|..+-+... ....+..|.....+|+.
T Consensus 121 --~Rs~-~s~v~e~~Lrv~ilE~ML~a~l~~~~~~~~~~~~~~~~V~~~~p~~v~~yw~~~~~~~~~~~~Kk~~i~lv~~ 197 (258)
T 1kcf_A 121 --YRSG-IATIPEWTLRVNMLESMLYALHYAEKRNSIEQKIQYPFLLSLSPKSTYSYWASVLNTKASFSKKKSRVQMVKE 197 (258)
T ss_dssp --CCTT-TCCHHHHHHHHHHHHHHHHHHHHHHHHC-------CCEEEECCHHHHHHHHHHHHC-------CCCHHHHHHH
T ss_pred --cccC-cccccchhhhHhHHHHHHHHHHHHHHhhcccccccceeEEecCHHHHHHhhhhcccccchhHHHHHHHHHHHH
Confidence 4444 4432 333333444444432 235788899999998762 11123457777788888
Q ss_pred hCCccccc--------------ccCCCCCCHHHHHHHHHHcc
Q 023513 221 LFPSLCSQ--------------LKRKKDHGKADAVLIAAYGK 248 (281)
Q Consensus 221 LLp~~~~~--------------L~~kk~ddaADALAIA~~g~ 248 (281)
+|...... ...+|.||-||+|+-|+...
T Consensus 198 ~L~~~~~~~~~~e~~~~~~~~~~~~~K~DDLaDslLq~lawl 239 (258)
T 1kcf_A 198 LIDGQKILFENEEALYKWNNGSRVEFKKDDMADSALIASGWM 239 (258)
T ss_dssp HHHTTSEEESSHHHHHHHHHCCSTTTHHHHHHHHHHHHHHHH
T ss_pred HHhcCCcCcCcHHHHHHHhcccccCcchHHHHHHHHHHHHHH
Confidence 87433100 13467789999999888543
No 5
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=95.00 E-value=0.11 Score=40.75 Aligned_cols=90 Identities=14% Similarity=0.029 Sum_probs=47.8
Q ss_pred ceEEEEcCCCC-ceEEEEeeCCCc-ceeEEeecCCcccccccchhhhhcHHHHHHHHHhhcCCCCCEEEEccccCCCCCC
Q 023513 88 QWALGIDPDLS-GALAVLKSDHNG-CSAEVFDTPHLPVLVGKRVRKRLDAKSMIMLLRSLDAPIGTTAYVEQSIPYPQDG 165 (281)
Q Consensus 88 ~iILGIDPGl~-gGyaVLe~~g~~-~~~~vvd~p~i~~~~~~~l~~rl~~~~I~~lL~~l~~~~Pd~aaVE~vf~ffgqN 165 (281)
|.|||||+|.. +|+|+-+..+.- ..+.++.. . .... +.+.|.+++.++. ++.++|=-.. .-+|
T Consensus 1 mriLglD~G~kriGvAvsd~~~~~A~pl~ti~~-------~-~~~~--~~~~l~~li~e~~---v~~iVvGlP~--~mdG 65 (98)
T 1iv0_A 1 MRVGALDVGEARIGLAVGEEGVPLASGRGYLVR-------K-TLEE--DVEALLDFVRREG---LGKLVVGLPL--RTDL 65 (98)
T ss_dssp CCEEEEEESSSEEEEEEECSCCSSCCCEEEEEC-------C-CHHH--HHHHHHHHHHHHT---CCEEEEECCC--CCCS
T ss_pred CcEEEEEeCCCEEEEEEEeCCCCeeeeeEEEEc-------c-CcHH--HHHHHHHHHHHcC---CCEEEEeecc--CCCC
Confidence 35899999999 599998765420 02333321 1 1112 4566777777765 8888876532 2222
Q ss_pred chhhhHHHhhHHHHHHHHHHcCCceeeeC
Q 023513 166 KQGWWSGGFGYGLWIGILVASGFSVVPIP 194 (281)
Q Consensus 166 vqSA~~vG~ArGVillala~~GIPV~Eyt 194 (281)
..+. ..-.++-.+-..... ++||+.+.
T Consensus 66 t~~~-~~~~~~~f~~~L~~~-~lpV~~~D 92 (98)
T 1iv0_A 66 KESA-QAGKVLPLVEALRAR-GVEVELWD 92 (98)
T ss_dssp SSCC-CSSTTHHHHHHHHHT-TCEEEEEC
T ss_pred CcCH-HHHHHHHHHHHHhcC-CCCEEEEC
Confidence 2111 111222222222334 89998764
No 6
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=94.97 E-value=0.037 Score=57.62 Aligned_cols=80 Identities=21% Similarity=0.299 Sum_probs=48.3
Q ss_pred HHHHhhhcccccccCCCCCCCccccccCCCCCceEEEEcCCCC-c-eEEEEeeCCCcceeEEeecCCc-ccccccchhhh
Q 023513 56 VAAQMKQNWLDSLTFPPLHVHDLTANQTNADSQWALGIDPDLS-G-ALAVLKSDHNGCSAEVFDTPHL-PVLVGKRVRKR 132 (281)
Q Consensus 56 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iILGIDPGl~-g-GyaVLe~~g~~~~~~vvd~p~i-~~~~~~~l~~r 132 (281)
....+.+|.-+-|.-+| ++.+.|||||||.+ + .+++|+..|+ ++++.++ +.........
T Consensus 309 ai~vf~~nL~~lLl~aP------------~~~~~vlg~dpg~r~g~k~a~vd~~G~-----~l~~~~iy~~~~~~~~~~- 370 (785)
T 3bzc_A 309 AISVFARNLHDLLLAAP------------AGPRATLGLDPGLRTGVKVAVVDATGK-----LLDTATVYPHAPKNQWDQ- 370 (785)
T ss_dssp HHHHHHHHHHHHHTSCC------------CCSCCEEEEECCSSSCEEEEEECTTSC-----EEEEEEECCSGGGCCHHH-
T ss_pred HHHHHHHHHHHHHcCCC------------CCCCeEEEECCCCcCceEEEEECCCCC-----EEEEEEEecCCchhHHHH-
Confidence 34555666555555444 33456999999987 4 6899988884 5555554 2212221212
Q ss_pred hcHHHHHHHHHhhcCCCCCEEEEcc
Q 023513 133 LDAKSMIMLLRSLDAPIGTTAYVEQ 157 (281)
Q Consensus 133 l~~~~I~~lL~~l~~~~Pd~aaVE~ 157 (281)
....|.+++.++. |+.++|=.
T Consensus 371 -~~~~l~~li~~~~---~~~IaIGn 391 (785)
T 3bzc_A 371 -TLAVLAALCAKHQ---VELIAIGN 391 (785)
T ss_dssp -HHHHHHHHHHHHT---CCEEEEES
T ss_pred -HHHHHHHHHHHcC---CCEEEECC
Confidence 3355666666654 99999854
No 7
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=94.38 E-value=0.3 Score=40.41 Aligned_cols=99 Identities=13% Similarity=-0.007 Sum_probs=54.7
Q ss_pred eEEEEcCCCC-ceEEEEeeCCCcceeEEeecCCcccccccchhhhhcHHHHHHHHHhhcCCCCCEEEEccccCCCCCCch
Q 023513 89 WALGIDPDLS-GALAVLKSDHNGCSAEVFDTPHLPVLVGKRVRKRLDAKSMIMLLRSLDAPIGTTAYVEQSIPYPQDGKQ 167 (281)
Q Consensus 89 iILGIDPGl~-gGyaVLe~~g~~~~~~vvd~p~i~~~~~~~l~~rl~~~~I~~lL~~l~~~~Pd~aaVE~vf~ffgqNvq 167 (281)
.|||||||.. +|+||-+..+. . .....+++ .. .... +...|.+++.++. |+.++|=-.. .-+|..
T Consensus 4 ~iLglD~G~kriGvAvsd~~~~--~--A~pl~ti~--~~-~~~~--~~~~l~~li~e~~---v~~iVvGlP~--~mdGt~ 69 (138)
T 1nu0_A 4 TLMAFDFGTKSIGVAVGQRITG--T--ARPLPAIK--AQ-DGTP--DWNIIERLLKEWQ---PDEIIVGLPL--NMDGTE 69 (138)
T ss_dssp EEEEEECCSSEEEEEEEETTTT--E--EEEEEEEE--EE-TTEE--CHHHHHHHHHHHC---CSEEEEEEEE--CTTSCB
T ss_pred eEEEEEeCCCEEEEEEEcCCCC--E--EeeEEEEE--cC-Ccch--HHHHHHHHHHHcC---CCEEEEeccc--CCCcCc
Confidence 5899999999 59999987654 1 11122222 11 1111 5578888888876 8888876532 223322
Q ss_pred hhhHHHhhHHHHHHHHHHcCCceeee----ChhhHHHHh
Q 023513 168 GWWSGGFGYGLWIGILVASGFSVVPI----PSLTWKNWY 202 (281)
Q Consensus 168 SA~~vG~ArGVillala~~GIPV~Ey----tP~qwKkaV 202 (281)
+ -..-.++-.+-......++||+.+ |..+-++.+
T Consensus 70 ~-~~~~~~~~f~~~L~~~~~lpV~~~DERlTT~~A~~~l 107 (138)
T 1nu0_A 70 Q-PLTARARKFANRIHGRFGVEVKLHDERLSTVEARSGL 107 (138)
T ss_dssp C-HHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC----
T ss_pred C-HHHHHHHHHHHHHHHHhCCCEEEEcCCcCHHHHHHHH
Confidence 2 222233444444444569999875 454555444
No 8
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=89.63 E-value=1 Score=44.37 Aligned_cols=23 Identities=4% Similarity=-0.165 Sum_probs=18.5
Q ss_pred CCCCCHHHHHHHHHHccccccCC
Q 023513 232 KKDHGKADAVLIAAYGKGLKLDS 254 (281)
Q Consensus 232 kk~ddaADALAIA~~g~~~~~~~ 254 (281)
-.+||.+|||++|+++...-.+.
T Consensus 563 g~HdD~~dAlalA~~~~~~~~~~ 585 (592)
T 3cpe_A 563 GYHDDLVMSLVIFGWLSTQSKFI 585 (592)
T ss_dssp TCCCHHHHHHHHHHHHHHSGGGT
T ss_pred CCCCHHHHHHHHHHHHHhhhHHH
Confidence 46889999999999988755554
No 9
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=82.56 E-value=2.5 Score=45.33 Aligned_cols=87 Identities=8% Similarity=0.073 Sum_probs=47.9
Q ss_pred HHHHHhhhcccccccCCCCCCCccccccCCCC-CceEEEEcCCCC-----c-eEEEEeeCCCcceeEEeecCCc-ccccc
Q 023513 55 AVAAQMKQNWLDSLTFPPLHVHDLTANQTNAD-SQWALGIDPDLS-----G-ALAVLKSDHNGCSAEVFDTPHL-PVLVG 126 (281)
Q Consensus 55 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~-~~iILGIDPGl~-----g-GyaVLe~~g~~~~~~vvd~p~i-~~~~~ 126 (281)
..+..+.+|..+-|.-+|-.-+ .. .+ ...|||||||.+ + -+++|+..| .++++.++ +.+.+
T Consensus 491 ~ai~~f~~nL~~lL~~aP~~p~-~~-----~g~~~~VlaldpG~~~~~~~g~k~a~vd~~G-----~~l~~~~i~~~~~~ 559 (1030)
T 3psf_A 491 LVAKTVRHKFMTKLDQAPFIPN-VR-----DPKIPKILSLTCGQGRFGADAIIAVYVNRKG-----DFIRDYKIVDNPFD 559 (1030)
T ss_dssp HHHHHHHHHHHHHHCCCCCCSC-TT-----SCCCCCEEEEECTTCCTTTSCEEEEEECTTS-----CEEEEEEECSCTTC
T ss_pred HHHHHHHHHHHHHHhCCCCCCC-cc-----cCCCCeEEEecCCCCCCCCCCeEEEEECCCC-----CEEEEEEEcCCCCC
Confidence 3456677777766666552111 11 11 335999999985 2 468898887 45555555 21111
Q ss_pred cchhhhhcHHHHHHHHHhhcCCCCCEEEEc
Q 023513 127 KRVRKRLDAKSMIMLLRSLDAPIGTTAYVE 156 (281)
Q Consensus 127 ~~l~~rl~~~~I~~lL~~l~~~~Pd~aaVE 156 (281)
..-+. -..+.|.+++.++ +|+.+||=
T Consensus 560 ~~~~~-~~~~~l~~li~~~---~~~~IaIG 585 (1030)
T 3psf_A 560 KTNPE-KFEDTLDNIIQSC---QPNAIGIN 585 (1030)
T ss_dssp SSCCH-HHHHHHHHHHHHH---CCSEEEEC
T ss_pred hhhHH-HHHHHHHHHHHHc---CCcEEEEC
Confidence 11111 1124555566555 49999983
No 10
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=82.31 E-value=2.4 Score=46.26 Aligned_cols=87 Identities=8% Similarity=0.073 Sum_probs=48.0
Q ss_pred HHHHHhhhcccccccCCCCCCCccccccCCCC-CceEEEEcCCCC-----c-eEEEEeeCCCcceeEEeecCCc-ccccc
Q 023513 55 AVAAQMKQNWLDSLTFPPLHVHDLTANQTNAD-SQWALGIDPDLS-----G-ALAVLKSDHNGCSAEVFDTPHL-PVLVG 126 (281)
Q Consensus 55 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~-~~iILGIDPGl~-----g-GyaVLe~~g~~~~~~vvd~p~i-~~~~~ 126 (281)
..+..+.+|..+-|.-+|-.-+ .. .+ ...|||||||.+ + -+++|+..| .++++.++ +.+.+
T Consensus 488 ~ai~~f~~nL~~lL~~aP~~p~-~~-----lg~~~~VlaldpG~r~~g~~g~k~a~vD~~G-----~vl~~~~i~~~~~~ 556 (1219)
T 3psi_A 488 LVAKTVRHKFMTKLDQAPFIPN-VR-----DPKIPKILSLTCGQGRFGADAIIAVYVNRKG-----DFIRDYKIVDNPFD 556 (1219)
T ss_dssp HHHHHHHHHHHHHHCBCCCCSS-SS-----SCCCCCEEEEECTTCCTTTTCEEEEEECTTS-----CEEEEEEECSCTTC
T ss_pred HHHHHHHHHHHHHHhCCCCCCC-cc-----cCCCCeEEEecCCCCCCCCCceEEEEECCCC-----CEEEEEEEcCCCCC
Confidence 3446677777666665552111 11 11 335899999996 2 468898887 45555555 21111
Q ss_pred cchhhhhcHHHHHHHHHhhcCCCCCEEEEc
Q 023513 127 KRVRKRLDAKSMIMLLRSLDAPIGTTAYVE 156 (281)
Q Consensus 127 ~~l~~rl~~~~I~~lL~~l~~~~Pd~aaVE 156 (281)
..-+. -..+.|.+++.++ +|+.+||=
T Consensus 557 ~~~~~-~a~~~l~~li~~~---~~~vIaIG 582 (1219)
T 3psi_A 557 KTNPE-KFEDTLDNIIQSC---QPNAIGIN 582 (1219)
T ss_dssp SSCSH-HHHHHHHHHHHHH---CCSEEEEC
T ss_pred hhhHH-HHHHHHHHHHHHc---CCcEEEEC
Confidence 11111 1124455566555 49999984
No 11
>3r6m_A YEAZ, resuscitation promoting factor; actin/HSP70 nucleotide-binding fold, bacterial resuscitation BUT non-culturable state, Y YJEE; 3.10A {Vibrio parahaemolyticus}
Probab=61.07 E-value=70 Score=27.75 Aligned_cols=95 Identities=15% Similarity=0.117 Sum_probs=52.5
Q ss_pred CceEEEEcCCCC-ceEEEEeeCCCcceeEEeecCCcccccccchhhhhcHHHHHHHHHhhcC--CCCCEEEEccccCCCC
Q 023513 87 SQWALGIDPDLS-GALAVLKSDHNGCSAEVFDTPHLPVLVGKRVRKRLDAKSMIMLLRSLDA--PIGTTAYVEQSIPYPQ 163 (281)
Q Consensus 87 ~~iILGIDPGl~-gGyaVLe~~g~~~~~~vvd~p~i~~~~~~~l~~rl~~~~I~~lL~~l~~--~~Pd~aaVE~vf~ffg 163 (281)
+|.|||||=... .+.|+++. +. -+.-. .. ......+++ ...|.+.|.+..- ...|.+++=. |
T Consensus 1 ~M~iLaIdTS~~~~svAl~~~-~~--~~~~~-----~~-~~~~Hs~~L-~p~i~~~L~~a~~~~~dld~Iav~~-----G 65 (213)
T 3r6m_A 1 SAKILAIDTATENCSVALLVN-DQ--VISRS-----EV-APRDHTKKV-LPMVDEVLKEAGLTLQDLDALAFGR-----G 65 (213)
T ss_dssp -CCEEEEECSSSEEEEEEESS-SC--EEEEE-----EE-CCSCCHHHH-HHHHHHHHHTTTCCTTTCSEEEEEE-----E
T ss_pred CCEEEEEEccCcceEEEEEEC-CE--EEEEE-----Ee-chHHHHHHH-HHHHHHHHHHcCCCHHHccEEEEec-----C
Confidence 478999998776 49999964 32 11111 11 112222222 2445566665421 3456666554 2
Q ss_pred CCchhhhHHHhhHHHHHHHHHHcCCceeeeChhhH
Q 023513 164 DGKQGWWSGGFGYGLWIGILVASGFSVVPIPSLTW 198 (281)
Q Consensus 164 qNvqSA~~vG~ArGVillala~~GIPV~EytP~qw 198 (281)
-|--|.+.+|-+ ++-+.+...|+|++-++-.+.
T Consensus 66 PGsfTglRig~~--~AkgLa~~~~iPl~gVstL~a 98 (213)
T 3r6m_A 66 PGSFTGVRIGIG--IAQGLAFGAELPMIGVSTLAA 98 (213)
T ss_dssp SSCHHHHHHHHH--HHHHHHHHTTCCEEEEEHHHH
T ss_pred CCchhhHHHHHH--HHHHHHHHhCCCEEEEcCHHH
Confidence 234455555543 333446678999999987763
No 12
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Probab=59.56 E-value=14 Score=31.84 Aligned_cols=21 Identities=19% Similarity=0.398 Sum_probs=17.4
Q ss_pred ceEEEEcCCCCc-eEEEEeeCC
Q 023513 88 QWALGIDPDLSG-ALAVLKSDH 108 (281)
Q Consensus 88 ~iILGIDPGl~g-GyaVLe~~g 108 (281)
|.+||||=|++. -.+|++.++
T Consensus 1 M~~lGID~GsT~tk~av~d~~~ 22 (276)
T 4ehu_A 1 MYTMGLDIGSTASKGVILKNGE 22 (276)
T ss_dssp CEEEEEEECSSCEEEEEEETTT
T ss_pred CeEEEEEcCccEEEEEEEECCC
Confidence 789999999985 788887655
No 13
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=58.74 E-value=47 Score=31.97 Aligned_cols=102 Identities=8% Similarity=-0.071 Sum_probs=52.4
Q ss_pred CceEEEEcCCCC-ceEEEEeeCCCcceeEEeecC-----CcccccccchhhhhcHHHHHHHHHhhcC-CCCCEEEEcccc
Q 023513 87 SQWALGIDPDLS-GALAVLKSDHNGCSAEVFDTP-----HLPVLVGKRVRKRLDAKSMIMLLRSLDA-PIGTTAYVEQSI 159 (281)
Q Consensus 87 ~~iILGIDPGl~-gGyaVLe~~g~~~~~~vvd~p-----~i~~~~~~~l~~rl~~~~I~~lL~~l~~-~~Pd~aaVE~vf 159 (281)
.|.|||||=... .+.||++.++.-+.....+.. ..+-.......+. ....+.+.|.+ +. ..+|.+|+=.
T Consensus 5 ~m~iL~i~ts~~~~~~al~~~~~~~~~~~~~~~~~~~gg~~p~~a~~~h~~~-l~~~i~~~l~~-~~~~~id~ia~~~-- 80 (540)
T 3en9_A 5 PMICLGLEGTAEKTGVGIVTSDGEVLFNKTIMYKPPKQGINPREAADHHAET-FPKLIKEAFEV-VDKNEIDLIAFSQ-- 80 (540)
T ss_dssp SCEEEEEECSSSEEEEEEEETTSCEEEEEEEECCCCCSSSSCCCHHHHHHHH-HHHHHHHHHHH-SCGGGCCEEEEEE--
T ss_pred cceEEEEEcCccceEEEEEECCCeEEEEEEEeecCCCCCCChHHHHHHHHHH-HHHHHHHHHHh-CCHhHCcEEEEec--
Confidence 478999997777 599999865421111111111 1110000111111 12334455555 34 5678888744
Q ss_pred CCCCCCchhhhHHHhhHHHHHHHHHHcCCceeeeChhh
Q 023513 160 PYPQDGKQGWWSGGFGYGLWIGILVASGFSVVPIPSLT 197 (281)
Q Consensus 160 ~ffgqNvqSA~~vG~ArGVillala~~GIPV~EytP~q 197 (281)
|-|--+.+.+|-+.+-. .+...++|++.+.=.+
T Consensus 81 ---gPG~~~~l~vg~~~ak~--la~~~~~p~~~v~h~~ 113 (540)
T 3en9_A 81 ---GPGLGPSLRVTATVART--LSLTLKKPIIGVNHCI 113 (540)
T ss_dssp ---ESSCHHHHHHHHHHHHH--HHHHHTCCEEEEEHHH
T ss_pred ---CCCchhhHHHHHHHHHH--HHHHhCCCeeEeccHH
Confidence 33445555555443332 3556788888876543
No 14
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}
Probab=43.32 E-value=22 Score=31.15 Aligned_cols=26 Identities=31% Similarity=0.342 Sum_probs=21.4
Q ss_pred CCCCceEEEEcCCCCc-eEEEEeeCCC
Q 023513 84 NADSQWALGIDPDLSG-ALAVLKSDHN 109 (281)
Q Consensus 84 ~~~~~iILGIDPGl~g-GyaVLe~~g~ 109 (281)
|.+...+||||-|.+. -+++++.+|+
T Consensus 2 ~~m~~~~lgiDiggt~~~~~l~d~~g~ 28 (326)
T 2qm1_A 2 NAMDKKIIGIDLGGTTIKFAILTTDGV 28 (326)
T ss_dssp CGGGCEEEEEEECSSEEEEEEEETTCC
T ss_pred CCcccEEEEEEECCCEEEEEEECCCCC
Confidence 5666789999999995 8899987774
No 15
>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*
Probab=41.41 E-value=1.1e+02 Score=27.47 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=16.0
Q ss_pred ceEEEEcCCCC-ceEEEEee
Q 023513 88 QWALGIDPDLS-GALAVLKS 106 (281)
Q Consensus 88 ~iILGIDPGl~-gGyaVLe~ 106 (281)
|+|||||=+.. .+.|+++.
T Consensus 1 M~iLgIdts~~~~~val~~~ 20 (330)
T 2ivn_A 1 MLALGIEGTAHTLGIGIVSE 20 (330)
T ss_dssp CCEEEEECSSSEEEEEEECS
T ss_pred CEEEEEEccCCCeEEEEEEC
Confidence 57999999988 58999964
No 16
>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum}
Probab=39.12 E-value=79 Score=28.88 Aligned_cols=102 Identities=10% Similarity=-0.080 Sum_probs=50.8
Q ss_pred CCceEEEEcCCCC-ceEEEEeeCCCcceeEEe-ec-----CCcccccccchhhhhcHHHHHHHHHhhc-C-CCCCEEEEc
Q 023513 86 DSQWALGIDPDLS-GALAVLKSDHNGCSAEVF-DT-----PHLPVLVGKRVRKRLDAKSMIMLLRSLD-A-PIGTTAYVE 156 (281)
Q Consensus 86 ~~~iILGIDPGl~-gGyaVLe~~g~~~~~~vv-d~-----p~i~~~~~~~l~~rl~~~~I~~lL~~l~-~-~~Pd~aaVE 156 (281)
++|.|||||=... .+.||++. ++ +-.... .. |..+-.......+. ....|.+.|.+.. . ...|.+++=
T Consensus 4 ~~M~iLgIdts~~~~svAl~~~-~~-i~~~~~~~~~~~~gGv~p~~a~~~H~~~-l~~~i~~~L~~ag~~~~did~Iav~ 80 (334)
T 3eno_A 4 DPMIVLGLEGTAHTISCGIIDE-SR-ILAMESSMYRPKTGGIRPLDAAVHHSEV-IDTVISRALEKAKISIHDIDLIGFS 80 (334)
T ss_dssp CCCEEEEEECSSSEEEEEEEES-SC-CCEEEEEECCCSSCSCCHHHHHHHHHHH-HHHHHHHHHHHHTCCGGGCCEEEEE
T ss_pred cCceEEEEECCCcCeEEEEEEC-CE-EEEEEEEeeccccCCcCcchHHHHHHHH-HHHHHHHHHHHcCCCHHHCCEEEEE
Confidence 3589999997766 59999983 32 211111 11 11110001111111 2244455555432 1 335666643
Q ss_pred cccCCCCCCchhhhHHHhhHHHHHHHHHHcCCceeeeChhh
Q 023513 157 QSIPYPQDGKQGWWSGGFGYGLWIGILVASGFSVVPIPSLT 197 (281)
Q Consensus 157 ~vf~ffgqNvqSA~~vG~ArGVillala~~GIPV~EytP~q 197 (281)
. +-+--+.+.+|-+. +-+.+...++|++.+.-.+
T Consensus 81 ~-----gPG~~t~lrvg~~~--ak~La~~~~~Pl~~v~hl~ 114 (334)
T 3eno_A 81 M-----GPGLAPSLRVTATA--ARTISVLTGKPIIGVNHPL 114 (334)
T ss_dssp C-----SSSCHHHHHHHHHH--HHHHHHHHTCCCEEECHHH
T ss_pred c-----CCCCcchHHHHHHH--HHHHhhccCCCeEEeccHH
Confidence 2 33444556665433 2334566799998887654
No 17
>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*
Probab=35.73 E-value=56 Score=31.14 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=20.8
Q ss_pred CCCCCceEEEEcCCCCc-eEEEEeeCCC
Q 023513 83 TNADSQWALGIDPDLSG-ALAVLKSDHN 109 (281)
Q Consensus 83 ~~~~~~iILGIDPGl~g-GyaVLe~~g~ 109 (281)
+|+|.+.+||||=|++. =.++++.+|+
T Consensus 1 ~~aM~~~~lgIDiGtts~k~~l~d~~G~ 28 (501)
T 3g25_A 1 SNAMEKYILSIDQGTTSSRAILFNQKGE 28 (501)
T ss_dssp --CCCCEEEEEEECSSEEEEEEECTTSC
T ss_pred CcccccEEEEEEeCccceEEEEEcCCCC
Confidence 47888899999999996 5777777765
No 18
>2gel_A Putative GRAM negative resuscitation promoting FA; YEAZ, RPF, actin-like-fold, glycoprotease, chaperone; 2.05A {Salmonella typhimurium} PDB: 2gem_A 1okj_A
Probab=34.48 E-value=1.1e+02 Score=26.49 Aligned_cols=93 Identities=13% Similarity=0.126 Sum_probs=48.7
Q ss_pred eEEEEcCCCC-ceEEEEeeCCCcceeEEeecCCcccccccchhhhhcHHHHHHHHHhhcC--CCCCEEEEccccCCCCCC
Q 023513 89 WALGIDPDLS-GALAVLKSDHNGCSAEVFDTPHLPVLVGKRVRKRLDAKSMIMLLRSLDA--PIGTTAYVEQSIPYPQDG 165 (281)
Q Consensus 89 iILGIDPGl~-gGyaVLe~~g~~~~~~vvd~p~i~~~~~~~l~~rl~~~~I~~lL~~l~~--~~Pd~aaVE~vf~ffgqN 165 (281)
.|||||--.. .+.|+++ ++ +++.... . ......+++ ...|.+.|.+..- ..-|.+++=. |-|
T Consensus 2 ~iL~idTs~~~~sval~~-~~-----~~~~~~~-~--~~~~h~~~l-~~~i~~~L~~a~~~~~did~Iav~~-----GPG 66 (231)
T 2gel_A 2 RILAIDTATEACSVALWN-NG-----TINAHFE-L--CPREHTQRI-LPMVQEILAASGASLNEIDALAFGR-----GPG 66 (231)
T ss_dssp EEEEEECSSSEEEEEEEE-TT-----EEEEEEE-E--CCSCCHHHH-HHHHHHHHHHTTCCGGGCSEEEEEC-----CSS
T ss_pred eEEEEECCCcCeEEEEEE-CC-----EEEEEEh-h--hhHHHHHHH-HHHHHHHHHHcCCCHHHCCEEEEEc-----CCC
Confidence 5899998777 4999997 33 2332111 1 112222222 2445555555321 2235555533 223
Q ss_pred chhhhHHHhhHHHHHHHHHHcCCceeeeChhhH
Q 023513 166 KQGWWSGGFGYGLWIGILVASGFSVVPIPSLTW 198 (281)
Q Consensus 166 vqSA~~vG~ArGVillala~~GIPV~EytP~qw 198 (281)
--|.+.+|- .++-+.+...|+|++-++-.+.
T Consensus 67 sftglRig~--~~ak~la~~~~~Pl~~V~~l~a 97 (231)
T 2gel_A 67 SFTGVRIGI--GIAQGLALGANLPMIGVSTLAT 97 (231)
T ss_dssp CHHHHHHHH--HHHHHHHHTTTCCEEEECHHHH
T ss_pred hhHhHHHHH--HHHHHHHHHcCCCEEEeccHHH
Confidence 334455542 3444556778999999986543
No 19
>3c6a_A Terminase large subunit; terminase nuclease, viral protein; 1.16A {Enterobacteria phage RB49} PDB: 3c6h_A
Probab=32.41 E-value=55 Score=28.96 Aligned_cols=19 Identities=5% Similarity=-0.076 Sum_probs=15.0
Q ss_pred CCCCCHHHHHHHHHHcccc
Q 023513 232 KKDHGKADAVLIAAYGKGL 250 (281)
Q Consensus 232 kk~ddaADALAIA~~g~~~ 250 (281)
-.+||--||||||.|...-
T Consensus 203 G~HDD~VmSlala~w~a~q 221 (232)
T 3c6a_A 203 GFHDDLVMSLVIFGWLTTQ 221 (232)
T ss_dssp -CCCHHHHHHHHHHHHHTS
T ss_pred CCCcHHHHHHHHHHHHhhC
Confidence 3589999999999876653
No 20
>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, JOI for structural genomics, JCSG; 2.50A {Thermotoga maritima} SCOP: c.55.1.9 c.55.1.9
Probab=26.46 E-value=3.1e+02 Score=23.56 Aligned_cols=95 Identities=16% Similarity=0.132 Sum_probs=51.7
Q ss_pred ceEEEEcCCCCc-eEEEEeeCCCcceeEEeecCCcccccccchhhhhcHHHHHHHHHhhcC--CCCCEEEEccccCCCCC
Q 023513 88 QWALGIDPDLSG-ALAVLKSDHNGCSAEVFDTPHLPVLVGKRVRKRLDAKSMIMLLRSLDA--PIGTTAYVEQSIPYPQD 164 (281)
Q Consensus 88 ~iILGIDPGl~g-GyaVLe~~g~~~~~~vvd~p~i~~~~~~~l~~rl~~~~I~~lL~~l~~--~~Pd~aaVE~vf~ffgq 164 (281)
+.||+||=.... +.|+++ ++ +++. .....+....++| ...|.+.|.+..- ..-|.+++=. |-
T Consensus 12 ~~iLaidTS~~~~sval~~-~~-----~~l~---~~~~~~r~Hse~L-~p~i~~~L~~a~~~~~dld~Iav~~-----GP 76 (218)
T 2a6a_A 12 HMNVLALDTSQRIRIGLRK-GE-----DLFE---ISYTGEKKHAEIL-PVVVKKLLDELDLKVKDLDVVGVGI-----GP 76 (218)
T ss_dssp -CEEEEEECSSSEEEEEEE-TT-----EEEE---EEEESCGGGGGHH-HHHHHHHHHHHTCCGGGCSEEEEEC-----CS
T ss_pred ceEEEEEcCCcCeEEEEEE-CC-----EEEE---EEecchHHHHHHH-HHHHHHHHHHcCCCHHHCCEEEEEc-----CC
Confidence 348999999884 999997 33 2331 1111222233322 2445555555321 2235555543 23
Q ss_pred CchhhhHHHhhHHHHHHHHHHcCCceeeeChhhHH
Q 023513 165 GKQGWWSGGFGYGLWIGILVASGFSVVPIPSLTWK 199 (281)
Q Consensus 165 NvqSA~~vG~ArGVillala~~GIPV~EytP~qwK 199 (281)
|--|.+.+|-+. +-+.+...|+|++-++-.+.=
T Consensus 77 GsfTGlRiG~~~--Ak~La~~~~iPl~gVs~l~a~ 109 (218)
T 2a6a_A 77 GGLTGLRVGIAT--VVGLVSPYDIPVAPLNSFEMT 109 (218)
T ss_dssp SCHHHHHHHHHH--HHHHHGGGTCCEEEECHHHHH
T ss_pred CchHhHHHHHHH--HHHHHHHcCCCEEEeCcHHHH
Confidence 444445555433 334467789999999976653
No 21
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5
Probab=20.15 E-value=60 Score=28.43 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=18.4
Q ss_pred CceEEEEcCCCCc-eEEEEeeCC
Q 023513 87 SQWALGIDPDLSG-ALAVLKSDH 108 (281)
Q Consensus 87 ~~iILGIDPGl~g-GyaVLe~~g 108 (281)
+|.+||||=|.+. -.++++.+|
T Consensus 2 ~~~~lGiD~Gst~~k~~l~d~~g 24 (270)
T 1hux_A 2 SIYTLGIDVGSTASKCIILKDGK 24 (270)
T ss_dssp CCEEEEEEECSSEEEEEEEETTT
T ss_pred CcEEEEEEeccceEEEEEEeCCC
Confidence 3678999999995 888888766
Done!