Query 023513
Match_columns 281
No_of_seqs 122 out of 209
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 08:07:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023513.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023513hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1hjra_ c.55.3.6 (A:) RuvC res 100.0 1.3E-39 9.3E-44 275.6 15.5 152 89-253 2-155 (158)
2 d3bzka5 c.55.3.13 (A:325-473) 97.7 3.4E-05 2.5E-09 63.3 6.3 125 85-249 2-132 (149)
3 d1kcfa2 c.55.3.7 (A:39-256) Mi 96.6 0.0023 1.7E-07 53.7 7.4 158 89-248 3-201 (218)
4 d1vhxa_ c.55.3.8 (A:) Hypothet 95.3 0.046 3.4E-06 43.2 9.2 94 87-194 1-96 (140)
5 d1nu0a_ c.55.3.8 (A:) Hypothet 95.0 0.078 5.7E-06 41.7 9.8 99 87-202 2-107 (138)
6 d1iv0a_ c.55.3.8 (A:) Hypothet 88.6 0.52 3.8E-05 34.8 6.5 89 88-194 1-92 (98)
7 d2a6aa1 c.55.1.9 (A:1-103) Hyp 75.6 2.3 0.00017 30.8 5.5 96 88-198 1-96 (103)
8 d2aa4a1 c.55.1.10 (A:1-119) N- 57.7 6.3 0.00046 28.1 4.6 22 88-109 1-23 (119)
9 d1huxa_ c.55.1.5 (A:) Hydroxyg 49.4 10 0.00076 29.2 5.0 23 87-109 1-24 (259)
10 d2gupa1 c.55.1.10 (A:1-114) Hy 40.8 34 0.0024 24.1 6.4 47 88-147 1-48 (114)
11 d2ch5a2 c.55.1.5 (A:1-117) N-a 38.6 29 0.0021 24.9 5.7 34 86-121 1-35 (117)
12 d1zc6a1 c.55.1.5 (A:8-121) Pro 37.7 43 0.0031 23.2 6.4 21 89-109 5-26 (114)
13 d1woqa1 c.55.1.10 (A:11-139) I 35.9 30 0.0022 24.2 5.3 22 88-109 2-24 (129)
14 d2fsja2 c.55.1.12 (A:1-164) Hy 30.1 8.5 0.00062 29.1 1.3 12 88-99 1-12 (164)
15 d1okja1 c.55.1.9 (A:1-106) Hyp 29.3 88 0.0064 21.9 9.6 93 90-199 2-97 (106)
16 d2ap1a2 c.55.1.10 (A:1-117) Pu 23.1 59 0.0043 22.3 4.9 20 90-109 2-22 (117)
No 1
>d1hjra_ c.55.3.6 (A:) RuvC resolvase {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=1.3e-39 Score=275.56 Aligned_cols=152 Identities=18% Similarity=0.124 Sum_probs=135.7
Q ss_pred eEEEEcCCCC-ceEEEEeeCCCcceeEEeecCCcccccccchhhhhcHHHHHHHHHhhcC-CCCCEEEEccccCCCCCCc
Q 023513 89 WALGIDPDLS-GALAVLKSDHNGCSAEVFDTPHLPVLVGKRVRKRLDAKSMIMLLRSLDA-PIGTTAYVEQSIPYPQDGK 166 (281)
Q Consensus 89 iILGIDPGl~-gGyaVLe~~g~~~~~~vvd~p~i~~~~~~~l~~rl~~~~I~~lL~~l~~-~~Pd~aaVE~vf~ffgqNv 166 (281)
||||||||++ .|||||+.+++ +..+++++++++.. .++.+|+ ..|++.|.+++. |+||.++||++| |++|.
T Consensus 2 iILGIDPGl~~~G~avid~~~~--~~~~v~~g~i~t~~-~~~~~Rl--~~i~~~l~~li~~~~Pd~vaiE~~f--~~~n~ 74 (158)
T d1hjra_ 2 IILGIDPGSRVTGYGVIRQVGR--QLSYLGSGCIRTKV-DDLPSRL--KLIYAGVTEIITQFQPDYFAIEQVF--MAKNA 74 (158)
T ss_dssp EEEEEECCSSEEEEEEEEEETT--EEEEEEEEEEECCC-SCHHHHH--HHHHHHHHHHHHHHCCSEEEEEECC--CCCCT
T ss_pred EEEEEccCCCceEEEEEEeeCC--EEEEEEeeEEeCCC-CChHHHH--HHHHHHHHHHHhccCCCEEEEEeeh--hccCH
Confidence 7999999999 59999999998 89999999998754 4676755 889999999988 999999999986 99999
Q ss_pred hhhhHHHhhHHHHHHHHHHcCCceeeeChhhHHHHhcCCCCCCCHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHHHH
Q 023513 167 QGWWSGGFGYGLWIGILVASGFSVVPIPSLTWKNWYGLSGGTSTKDDSRRVASTLFPSLCSQLKRKKDHGKADAVLIAAY 246 (281)
Q Consensus 167 qSA~~vG~ArGVillala~~GIPV~EytP~qwKkaVg~s~G~A~KeQVq~MV~~LLp~~~~~L~~kk~ddaADALAIA~~ 246 (281)
+|++++|++||++++++..+|||++||+|++|||+++|+ |+|+|+||+.|++.+|+... .+. +|.|||||||+|
T Consensus 75 ~sa~~l~~arG~i~l~a~~~~ipi~e~~P~~vKk~vtG~-G~A~K~qV~~mv~~~l~l~~----~~~-~D~aDAlAiAl~ 148 (158)
T d1hjra_ 75 DSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGI-GSAEKSQVQHMVRTLLKLPA----NPQ-ADAADALAIAIT 148 (158)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHTSS-SSCCHHHHHHHHHHHTTCCC----CCS-SCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCcceeecchhhhheeecCC-CCcCHHHHHHHHHHHcCCCC----CCC-CCHHHHHHHHHH
Confidence 999999999999999999999999999999999999776 99999999999999997654 144 469999999999
Q ss_pred ccccccC
Q 023513 247 GKGLKLD 253 (281)
Q Consensus 247 g~~~~~~ 253 (281)
|..+...
T Consensus 149 h~~~~~~ 155 (158)
T d1hjra_ 149 HCHVSQN 155 (158)
T ss_dssp HHHTTSS
T ss_pred HHHHhcc
Confidence 8876554
No 2
>d3bzka5 c.55.3.13 (A:325-473) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]}
Probab=97.65 E-value=3.4e-05 Score=63.32 Aligned_cols=125 Identities=18% Similarity=0.193 Sum_probs=67.2
Q ss_pred CCCceEEEEcCCCC-c-eEEEEeeCCCcceeEEeecCCc-ccccccchhhhhcHHHHHHHHHhhcCCCCCEEEEccccCC
Q 023513 85 ADSQWALGIDPDLS-G-ALAVLKSDHNGCSAEVFDTPHL-PVLVGKRVRKRLDAKSMIMLLRSLDAPIGTTAYVEQSIPY 161 (281)
Q Consensus 85 ~~~~iILGIDPGl~-g-GyaVLe~~g~~~~~~vvd~p~i-~~~~~~~l~~rl~~~~I~~lL~~l~~~~Pd~aaVE~vf~f 161 (281)
.+.+.|||||||.+ | .+|+|+.+| +++++.++ +.....+..+ ..+.|.+++.+ |+|+.++|-.
T Consensus 2 ~~~~~vlg~DPg~r~gck~AvlD~~G-----~vld~~viyp~~~~~~~~~--a~~~l~~li~k---~~p~vIaIGN---- 67 (149)
T d3bzka5 2 AGPRATLGLDPGLRTGVKVAVVDATG-----KLLDTATVYPHAPKNQWDQ--TLAVLAALCAK---HQVELIAIGN---- 67 (149)
T ss_dssp CCSCCEEEEECCSTTCEEEEEECTTS-----CEEEEEEECCSTTTCCHHH--HHHHHHHHHHH---TTCCEEEEES----
T ss_pred CCCceEEEECCCcccccEEEEECCCC-----CEEEEEEEecCCcHHHHHH--HHHHHHHHHHH---cCCeEEEECC----
Confidence 46778999999987 4 799999888 45665555 2111211111 22345555555 5599999932
Q ss_pred CCCCchhhhHHHhhHHHHHHHHH---HcCCceeeeChhhHHHHhcCCCCCCCHHHHHHHHHHhCCcccccccCCCCCCHH
Q 023513 162 PQDGKQGWWSGGFGYGLWIGILV---ASGFSVVPIPSLTWKNWYGLSGGTSTKDDSRRVASTLFPSLCSQLKRKKDHGKA 238 (281)
Q Consensus 162 fgqNvqSA~~vG~ArGVillala---~~GIPV~EytP~qwKkaVg~s~G~A~KeQVq~MV~~LLp~~~~~L~~kk~ddaA 238 (281)
|..|- +..-.+--.+. ..+|+|..+. . -+|+-=+.-..++.-||+.... .=
T Consensus 68 ---gTasr----e~~~~v~~l~~~~~~~~i~~~iV~---------e--~gAsvYs~S~~A~~EfP~~~~~--------~R 121 (149)
T d3bzka5 68 ---GTASR----ETDKLAGELIKKYPGMKLTKIMVS---------E--AGASVYSASELAAKEFPELDVS--------LR 121 (149)
T ss_dssp ---STTHH----HHHHHHHHHHHHCGGGCCEEEEEC---------C--TTHHHHHTSHHHHHHCTTSCHH--------HH
T ss_pred ---CccHH----HHHHHHHHHHHhCCCCCcEEEEEe---------c--cchhhhhCCHHHHHHCCCCChh--------Hh
Confidence 22221 11222222222 2355554332 1 2244444445667778765421 34
Q ss_pred HHHHHHHHccc
Q 023513 239 DAVLIAAYGKG 249 (281)
Q Consensus 239 DALAIA~~g~~ 249 (281)
-|++||.+-+.
T Consensus 122 ~AVsiaRrlQd 132 (149)
T d3bzka5 122 GAVSIARRLQD 132 (149)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhhC
Confidence 57888876543
No 3
>d1kcfa2 c.55.3.7 (A:39-256) Mitochondrial resolvase ydc2 catalytic domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=96.59 E-value=0.0023 Score=53.69 Aligned_cols=158 Identities=13% Similarity=0.089 Sum_probs=78.1
Q ss_pred eEEEEcCCCCc-eEEEEeeCCCc---c-eeEEeecCCc---ccccccchhhhhcHHHHHHHHHhhcC-CCCCEEEEcccc
Q 023513 89 WALGIDPDLSG-ALAVLKSDHNG---C-SAEVFDTPHL---PVLVGKRVRKRLDAKSMIMLLRSLDA-PIGTTAYVEQSI 159 (281)
Q Consensus 89 iILGIDPGl~g-GyaVLe~~g~~---~-~~~vvd~p~i---~~~~~~~l~~rl~~~~I~~lL~~l~~-~~Pd~aaVE~vf 159 (281)
.||+||-|+.. ||++++.+++. + ...+++.-.- .......+.........+.++..+.. +.||.+.||+.-
T Consensus 3 kIlSIDvGIkNlAyc~l~~~~~~~~~I~~W~~i~L~~~~~~~~k~~~~~~~~~~~~~~~~l~~~l~~~~~~d~vlIE~Q~ 82 (218)
T d1kcfa2 3 RVLGIDLGIKNFSYCFASQNEDSKVIIHNWSVENLTEKNGLDIQWTEDFQPSSMADLSIQLFNTLHEKFNPHVILMERQR 82 (218)
T ss_dssp SEEEEEECSTTEEEEEEEECTTSCEEEEEEEEECTTSCCTTCCCCCCCCSHHHHHHHHHHHHHHHHHHHCCSEEEEEECC
T ss_pred eEEEEEeCccccEEEEEeeCCCCCcEEEEeeeEeecccccCcccccccCCHHHHHHHHHHHHhhhhcccCCceEEEeecc
Confidence 38999999996 99999886642 1 3333332111 10011111111122334444555444 669999999984
Q ss_pred CCCCCCchhhhH----HHhhHHHHHHHHHH---------cCCc-eeeeChhhHHHHh----cCCCCCCCHHHHHHHHHHh
Q 023513 160 PYPQDGKQGWWS----GGFGYGLWIGILVA---------SGFS-VVPIPSLTWKNWY----GLSGGTSTKDDSRRVASTL 221 (281)
Q Consensus 160 ~ffgqNvqSA~~----vG~ArGVillala~---------~GIP-V~EytP~qwKkaV----g~s~G~A~KeQVq~MV~~L 221 (281)
+..|..+.+. +.--.+.+...... ..++ |....|..+-+.. +..+-...|.....+++.+
T Consensus 83 --~r~~~~~i~~~~l~~~~le~ml~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~Kk~~i~~~~~~ 160 (218)
T d1kcfa2 83 --YRSGIATIPEWTLRVNMLESMLYALHYAEKRNSIEQKIQYPFLLSLSPKSTYSYWASVLNTKASFSKKKSRVQMVKEL 160 (218)
T ss_dssp --CCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHC-------CCEEEECCHHHHHHHHHHHHC-------CCCHHHHHHHH
T ss_pred --cccCccchhHHHHHHHHHHHHHHHHHHHhccccccccccceeEEEcCccceeeeccccccccccchhHHHHHHHHHHH
Confidence 2223222222 22222222222211 1222 5666777765544 1110124466666777777
Q ss_pred CCccc--------------ccccCCCCCCHHHHHHHHHHcc
Q 023513 222 FPSLC--------------SQLKRKKDHGKADAVLIAAYGK 248 (281)
Q Consensus 222 Lp~~~--------------~~L~~kk~ddaADALAIA~~g~ 248 (281)
+.... ..-..+|-||-||+++-|++..
T Consensus 161 L~~~~~~~~~~~~~~~~~~~~~~~kKkDDLADs~Lq~l~~l 201 (218)
T d1kcfa2 161 IDGQKILFENEEALYKWNNGSRVEFKKDDMADSALIASGWM 201 (218)
T ss_dssp HHTTSEEESSHHHHHHHHHCCSTTTHHHHHHHHHHHHHHHH
T ss_pred HhhCccccCcchHHHHHHHhcccCCCchhhHhHHHHHHHHH
Confidence 62210 0112355678999999999754
No 4
>d1vhxa_ c.55.3.8 (A:) Hypothetical protein YrrK (RuvX) {Bacillus subtilis [TaxId: 1423]}
Probab=95.28 E-value=0.046 Score=43.19 Aligned_cols=94 Identities=12% Similarity=-0.002 Sum_probs=54.0
Q ss_pred CceEEEEcCCCC-ceEEEEeeCCCcc-eeEEeecCCcccccccchhhhhcHHHHHHHHHhhcCCCCCEEEEccccCCCCC
Q 023513 87 SQWALGIDPDLS-GALAVLKSDHNGC-SAEVFDTPHLPVLVGKRVRKRLDAKSMIMLLRSLDAPIGTTAYVEQSIPYPQD 164 (281)
Q Consensus 87 ~~iILGIDPGl~-gGyaVLe~~g~~~-~~~vvd~p~i~~~~~~~l~~rl~~~~I~~lL~~l~~~~Pd~aaVE~vf~ffgq 164 (281)
+|.|||||+|.. +|+|+=+..+.-. .+.++...... .......|.+++.++. |+..+|=-.+ .-+
T Consensus 1 ~mriLgiD~G~kriGvAisd~~~~~a~pl~~i~~~~~~--------~~~~~~~l~~ii~e~~---i~~iViGlP~--~~d 67 (140)
T d1vhxa_ 1 SLRILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAE--------GDYGLSRLSELIKDYT---IDKIVLGFPK--NMN 67 (140)
T ss_dssp CEEEEEEEECSSEEEEEEECTTSSSEEEEEEEECBGGG--------TBCCHHHHHHHHTTSE---EEEEEEECCC--CBT
T ss_pred CceEEEEEeCCCEEEEEEecCCCCcccceeeEeecccc--------cchHHHHHHHHHHhhc---cceEEEeccc--ccC
Confidence 578999999999 5999876554311 23333322211 0112356677776654 7877776633 444
Q ss_pred CchhhhHHHhhHHHHHHHHHHcCCceeeeC
Q 023513 165 GKQGWWSGGFGYGLWIGILVASGFSVVPIP 194 (281)
Q Consensus 165 NvqSA~~vG~ArGVillala~~GIPV~Eyt 194 (281)
|..+... ...+=.+-......++||+.+.
T Consensus 68 g~~~~~~-~~~~~f~~~l~~~~~i~V~~~D 96 (140)
T d1vhxa_ 68 GTVGPRG-EASQTFAKVLETTYNVPVVLWD 96 (140)
T ss_dssp TBCCHHH-HHHHHHHHHHHHHHCSCEEEEC
T ss_pred CcchhHH-HHHHHHHHHhccCCCccEEEee
Confidence 4433322 2333333445677799999764
No 5
>d1nu0a_ c.55.3.8 (A:) Hypothetical protein YqgF (RuvX) {Escherichia coli [TaxId: 562]}
Probab=95.03 E-value=0.078 Score=41.72 Aligned_cols=99 Identities=13% Similarity=0.014 Sum_probs=56.3
Q ss_pred CceEEEEcCCCC-ceEEEEeeCCCc-ceeEEeecCCcccccccchhhhhcHHHHHHHHHhhcCCCCCEEEEccccCCCCC
Q 023513 87 SQWALGIDPDLS-GALAVLKSDHNG-CSAEVFDTPHLPVLVGKRVRKRLDAKSMIMLLRSLDAPIGTTAYVEQSIPYPQD 164 (281)
Q Consensus 87 ~~iILGIDPGl~-gGyaVLe~~g~~-~~~~vvd~p~i~~~~~~~l~~rl~~~~I~~lL~~l~~~~Pd~aaVE~vf~ffgq 164 (281)
+..|||||+|.. +|+||=+..+.- ..+.++..... .. ++..|.+.+.++. |+.++|=-.+ .-+
T Consensus 2 ~griLgiD~G~kriGvAvsd~~~~~a~pl~~i~~~~~--------~~--~~~~l~~i~~e~~---~~~iVvG~P~--~~~ 66 (138)
T d1nu0a_ 2 SGTLMAFDFGTKSIGVAVGQRITGTARPLPAIKAQDG--------TP--DWNIIERLLKEWQ---PDEIIVGLPL--NMD 66 (138)
T ss_dssp CCEEEEEECCSSEEEEEEEETTTTEEEEEEEEEEETT--------EE--CHHHHHHHHHHHC---CSEEEEEEEE--CTT
T ss_pred CCcEEEEEeCCCEEEEEEeCCCCCccccceeeecccc--------hh--hHHHHHHHhhccC---ccEEEeeccc--ccc
Confidence 456999999999 599998766530 02233332211 11 4467778888776 9999995543 334
Q ss_pred Cchhh-hHHHhhHHHHHHHHHHcCCceee----eChhhHHHHh
Q 023513 165 GKQGW-WSGGFGYGLWIGILVASGFSVVP----IPSLTWKNWY 202 (281)
Q Consensus 165 NvqSA-~~vG~ArGVillala~~GIPV~E----ytP~qwKkaV 202 (281)
|..+. -..-..++-. .....++||+. +|..+.+..+
T Consensus 67 g~~~~~~~~v~~f~~~--L~~~~~i~V~~~DEr~TS~eA~~~l 107 (138)
T d1nu0a_ 67 GTEQPLTARARKFANR--IHGRFGVEVKLHDERLSTVEARSGL 107 (138)
T ss_dssp SCBCHHHHHHHHHHHH--HHHHHCCCEEEEEEECCCCCC----
T ss_pred cchHHHHHHHHHHHHH--HhhccCCCeEEEeccccHHHHHHHH
Confidence 43332 2222333333 35667999976 4555555554
No 6
>d1iv0a_ c.55.3.8 (A:) Hypothetical protein, YqgF homologue {Thermus thermophilus [TaxId: 274]}
Probab=88.63 E-value=0.52 Score=34.79 Aligned_cols=89 Identities=12% Similarity=-0.018 Sum_probs=49.2
Q ss_pred ceEEEEcCCCC-ceEEEEeeCCCcc-eeEEeecCCcccccccchhhhhcHHHHHHHHHhhcCCCCCEEEEccccCCCC-C
Q 023513 88 QWALGIDPDLS-GALAVLKSDHNGC-SAEVFDTPHLPVLVGKRVRKRLDAKSMIMLLRSLDAPIGTTAYVEQSIPYPQ-D 164 (281)
Q Consensus 88 ~iILGIDPGl~-gGyaVLe~~g~~~-~~~vvd~p~i~~~~~~~l~~rl~~~~I~~lL~~l~~~~Pd~aaVE~vf~ffg-q 164 (281)
|.|||||-|.. +|+|+=+..+.-. .+.+++... ... +...|.+++.++. |+..+|=-...+-| .
T Consensus 1 MriLglD~G~kriGiAisd~~~~~a~pl~~i~~~~--------~~~--~~~~l~~ii~e~~---i~~iVvGlP~~~dG~~ 67 (98)
T d1iv0a_ 1 MRVGALDVGEARIGLAVGEEGVPLASGRGYLVRKT--------LEE--DVEALLDFVRREG---LGKLVVGLPLRTDLKE 67 (98)
T ss_dssp CCEEEEEESSSEEEEEEECSCCSSCCCEEEEECCC--------HHH--HHHHHHHHHHHHT---CCEEEEECCCCCCSSS
T ss_pred CcEEEEEcCCCEEEEEEecCCCCeEcceEEEECCC--------chH--HHHHHHHHHHhhc---cceeEcccccccCCCc
Confidence 56999999999 5999876544310 233333221 112 3466777777765 88888876431111 1
Q ss_pred CchhhhHHHhhHHHHHHHHHHcCCceeeeC
Q 023513 165 GKQGWWSGGFGYGLWIGILVASGFSVVPIP 194 (281)
Q Consensus 165 NvqSA~~vG~ArGVillala~~GIPV~Eyt 194 (281)
+.++... +.++-.+ ...++||+.+.
T Consensus 68 ~~~~~~v--~~f~~~L---~~~~lpv~~~D 92 (98)
T d1iv0a_ 68 SAQAGKV--LPLVEAL---RARGVEVELWD 92 (98)
T ss_dssp CCCSSTT--HHHHHHH---HHTTCEEEEEC
T ss_pred CHHHHHH--HHHHHHH---hhCCCCEEEEc
Confidence 2222221 2222222 45699998764
No 7
>d2a6aa1 c.55.1.9 (A:1-103) Hypothetical protein TM0874 {Thermotoga maritima [TaxId: 2336]}
Probab=75.62 E-value=2.3 Score=30.81 Aligned_cols=96 Identities=16% Similarity=0.133 Sum_probs=48.6
Q ss_pred ceEEEEcCCCCceEEEEeeCCCcceeEEeecCCcccccccchhhhhcHHHHHHHHHhhcCCCCCEEEEccccCCCCCCch
Q 023513 88 QWALGIDPDLSGALAVLKSDHNGCSAEVFDTPHLPVLVGKRVRKRLDAKSMIMLLRSLDAPIGTTAYVEQSIPYPQDGKQ 167 (281)
Q Consensus 88 ~iILGIDPGl~gGyaVLe~~g~~~~~~vvd~p~i~~~~~~~l~~rl~~~~I~~lL~~l~~~~Pd~aaVE~vf~ffgqNvq 167 (281)
|.||+||=.....+|+.+ ++ . +++.... .+....+ .....|.+.|.+..- +.--|+.+..--|.|--
T Consensus 1 M~iLaidTS~~~sval~~--~~--~--~~~~~~~---~~~~hs~-~l~~~i~~~l~~~~~---~~~di~~i~v~~GPGsf 67 (103)
T d2a6aa1 1 MNVLALDTSQRIRIGLRK--GE--D--LFEISYT---GEKKHAE-ILPVVVKKLLDELDL---KVKDLDVVGVGIGPGGL 67 (103)
T ss_dssp CEEEEEECSSSEEEEEEE--TT--E--EEEEEEE---SCGGGGG-HHHHHHHHHHHHHTC---CGGGCSEEEEECCSSCH
T ss_pred CcEEEEEcCcccEEEEEE--CC--E--EEEEecc---CchHHHH-HHHHHHHHHHHHcCC---CHHHhHHHhhcCCCCcc
Confidence 679999965334777764 33 2 2221111 1111222 123445566666531 12224444311133444
Q ss_pred hhhHHHhhHHHHHHHHHHcCCceeeeChhhH
Q 023513 168 GWWSGGFGYGLWIGILVASGFSVVPIPSLTW 198 (281)
Q Consensus 168 SA~~vG~ArGVillala~~GIPV~EytP~qw 198 (281)
|.+.+|- .++.+.+...++|++.++-.+.
T Consensus 68 TglRig~--s~akgla~~~~ip~~gis~l~~ 96 (103)
T d2a6aa1 68 TGLRVGI--ATVVGLVSPYDIPVAPLNSFEM 96 (103)
T ss_dssp HHHHHHH--HHHHHHHGGGTCCEEEECHHHH
T ss_pred hhHHHHH--HHHHHHHHHcCCCEEEeCHHHH
Confidence 5555544 4455557788999999997764
No 8
>d2aa4a1 c.55.1.10 (A:1-119) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]}
Probab=57.73 E-value=6.3 Score=28.14 Aligned_cols=22 Identities=27% Similarity=0.229 Sum_probs=18.8
Q ss_pred ceEEEEcCCCCc-eEEEEeeCCC
Q 023513 88 QWALGIDPDLSG-ALAVLKSDHN 109 (281)
Q Consensus 88 ~iILGIDPGl~g-GyaVLe~~g~ 109 (281)
|.+||||=|-+. -+|+++.+|.
T Consensus 1 M~~lgiDiGgT~i~~~l~d~~G~ 23 (119)
T d2aa4a1 1 MTTLAIDIGGTKLAAALIGADGQ 23 (119)
T ss_dssp CCEEEEEECSSEEEEEEECTTCC
T ss_pred CeEEEEEeCcCEEEEEEEcCCCC
Confidence 568999999994 9999988774
No 9
>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]}
Probab=49.39 E-value=10 Score=29.19 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=19.7
Q ss_pred CceEEEEcCCCC-ceEEEEeeCCC
Q 023513 87 SQWALGIDPDLS-GALAVLKSDHN 109 (281)
Q Consensus 87 ~~iILGIDPGl~-gGyaVLe~~g~ 109 (281)
+|-+||||=|-+ +-++|++.+++
T Consensus 1 ~M~~lGIDiGGT~~k~~vvd~~g~ 24 (259)
T d1huxa_ 1 SIYTLGIDVGSTASKCIILKDGKE 24 (259)
T ss_dssp CCEEEEEEECSSEEEEEEEETTTE
T ss_pred CcEEEEEEeCcceEEEEEEcCCCc
Confidence 588999999988 59999998773
No 10
>d2gupa1 c.55.1.10 (A:1-114) Hypothetical protein SP2142 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=40.80 E-value=34 Score=24.12 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=29.7
Q ss_pred ceEEEEcCCCCc-eEEEEeeCCCcceeEEeecCCcccccccchhhhhcHHHHHHHHHhhcC
Q 023513 88 QWALGIDPDLSG-ALAVLKSDHNGCSAEVFDTPHLPVLVGKRVRKRLDAKSMIMLLRSLDA 147 (281)
Q Consensus 88 ~iILGIDPGl~g-GyaVLe~~g~~~~~~vvd~p~i~~~~~~~l~~rl~~~~I~~lL~~l~~ 147 (281)
|.|+|||=|-+. -+|+++.+|. +++...++++. ....+.+.+.+...
T Consensus 1 M~i~~iDiGgT~i~~~l~d~~g~-----i~~~~~~~t~~--------~~~~~~~~i~~~~~ 48 (114)
T d2gupa1 1 MTIATIDIGGTGIKFASLTPDGK-----ILDKTSISTPE--------NLEDLLAWLDQRLS 48 (114)
T ss_dssp CCEEEEEEETTEEEEEEECTTCC-----EEEEEEECCCS--------SHHHHHHHHHHHHT
T ss_pred CeEEEEEeCcccEEEEEEcCCCC-----EEEEEEEcccc--------cHHHHHHHHHHHhh
Confidence 568999999994 9999988774 34433333311 22555666666554
No 11
>d2ch5a2 c.55.1.5 (A:1-117) N-acetylglucosamine kinase, NAGK {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.56 E-value=29 Score=24.87 Aligned_cols=34 Identities=9% Similarity=-0.020 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCCc-eEEEEeeCCCcceeEEeecCCc
Q 023513 86 DSQWALGIDPDLSG-ALAVLKSDHNGCSAEVFDTPHL 121 (281)
Q Consensus 86 ~~~iILGIDPGl~g-GyaVLe~~g~~~~~~vvd~p~i 121 (281)
|..++||||=|-+. -+.+++.+|+ .+.-...+..
T Consensus 1 m~~~~~GIDgGGTkT~~~l~d~~G~--~l~~~~~g~~ 35 (117)
T d2ch5a2 1 MAAIYGGVEGGGTRSEVLLVSEDGK--ILAEADGLST 35 (117)
T ss_dssp SSCEEEEEEECTTCEEEEEEETTSC--EEEEEEECCC
T ss_pred CCcEEEEEEcChhhEEEEEECCCCC--EEEEEEcCCC
Confidence 45689999999995 7888888775 4444444443
No 12
>d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]}
Probab=37.68 E-value=43 Score=23.15 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=18.2
Q ss_pred eEEEEcCCCCc-eEEEEeeCCC
Q 023513 89 WALGIDPDLSG-ALAVLKSDHN 109 (281)
Q Consensus 89 iILGIDPGl~g-GyaVLe~~g~ 109 (281)
.+||||=|.+. =+++++.+|+
T Consensus 5 y~lGID~GGT~tk~~l~d~~G~ 26 (114)
T d1zc6a1 5 YLIGVDGGGTGTRIRLHASDGT 26 (114)
T ss_dssp EEEEEEECSSCEEEEEEETTCC
T ss_pred EEEEEEcCcceEEEEEEcCCCC
Confidence 69999999995 7899988875
No 13
>d1woqa1 c.55.1.10 (A:11-139) Inorganic polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter sp. KM [TaxId: 184230]}
Probab=35.87 E-value=30 Score=24.25 Aligned_cols=22 Identities=14% Similarity=0.037 Sum_probs=18.1
Q ss_pred ceEEEEcCCCC-ceEEEEeeCCC
Q 023513 88 QWALGIDPDLS-GALAVLKSDHN 109 (281)
Q Consensus 88 ~iILGIDPGl~-gGyaVLe~~g~ 109 (281)
..|||||=|-+ .-+|+++.+++
T Consensus 2 ~~vlGiDiGgT~i~~~l~d~~~g 24 (129)
T d1woqa1 2 APLIGIDIGGTGIKGGIVDLKKG 24 (129)
T ss_dssp CCEEEEEECSSEEEEEEEETTTT
T ss_pred CCEEEEEECcceEEEEEEECCCC
Confidence 45899999988 58999987664
No 14
>d2fsja2 c.55.1.12 (A:1-164) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=30.13 E-value=8.5 Score=29.06 Aligned_cols=12 Identities=17% Similarity=0.313 Sum_probs=10.4
Q ss_pred ceEEEEcCCCCc
Q 023513 88 QWALGIDPDLSG 99 (281)
Q Consensus 88 ~iILGIDPGl~g 99 (281)
|+|||||.|.+.
T Consensus 1 m~iigiD~G~g~ 12 (164)
T d2fsja2 1 MVVVGLDVGYGD 12 (164)
T ss_dssp CEEEEEEECSSE
T ss_pred CEEEEEEcCCcc
Confidence 689999999883
No 15
>d1okja1 c.55.1.9 (A:1-106) Hypothetical protein YeaZ {Escherichia coli [TaxId: 562]}
Probab=29.26 E-value=88 Score=21.94 Aligned_cols=93 Identities=13% Similarity=0.099 Sum_probs=51.6
Q ss_pred EEEEcCCCCc-eEEEEeeCCCcceeEEeecCCcccccccchhhhhcHHHHHHHHHhhcC--CCCCEEEEccccCCCCCCc
Q 023513 90 ALGIDPDLSG-ALAVLKSDHNGCSAEVFDTPHLPVLVGKRVRKRLDAKSMIMLLRSLDA--PIGTTAYVEQSIPYPQDGK 166 (281)
Q Consensus 90 ILGIDPGl~g-GyaVLe~~g~~~~~~vvd~p~i~~~~~~~l~~rl~~~~I~~lL~~l~~--~~Pd~aaVE~vf~ffgqNv 166 (281)
||+||=-... ++|+++. +. +-......+. ...+ .....+.+.|.+..- .+.|..++=. |-|-
T Consensus 2 iLaIdTS~~~~sval~~~-~~-i~~~~~~~~~-------~h~~-~l~~~i~~~l~~~~~~~~di~~i~v~~-----GPGs 66 (106)
T d1okja1 2 ILAIDTATEACSVALWND-GT-VNAHFELCPR-------EHTQ-RILPMVQDILTTSGTSLTDINALAYGR-----GPGS 66 (106)
T ss_dssp EEEEECSSSEEEEEEEET-TE-EEEEEEECCS-------STTT-THHHHHHHHHHHTTCCGGGCCEEEEEE-----ESSC
T ss_pred EEEEECCCcceEEEEEEC-CE-EEEEEEEccH-------HHHH-HHHHHHHHHHHhcCCcceeeeEEEEee-----ccCc
Confidence 7999988884 8998863 32 1111111111 1111 123445666665422 2234555443 3445
Q ss_pred hhhhHHHhhHHHHHHHHHHcCCceeeeChhhHH
Q 023513 167 QGWWSGGFGYGLWIGILVASGFSVVPIPSLTWK 199 (281)
Q Consensus 167 qSA~~vG~ArGVillala~~GIPV~EytP~qwK 199 (281)
-|.+-+|-+.. .+.+...++|++.|+..+.-
T Consensus 67 fTglRig~s~a--kgla~~~~ip~~~v~sl~~l 97 (106)
T d1okja1 67 FTGVRIGIGIA--QGLALGAELPMIGVSTLMTM 97 (106)
T ss_dssp HHHHHHHHHHH--HHHHHHTTCCEEEEEHHHHH
T ss_pred cccchHHHHHH--HHHHHHcCCCEEEeCHHHHH
Confidence 56666665544 44466799999999987654
No 16
>d2ap1a2 c.55.1.10 (A:1-117) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]}
Probab=23.06 E-value=59 Score=22.26 Aligned_cols=20 Identities=30% Similarity=0.270 Sum_probs=17.3
Q ss_pred EEEEcCCCC-ceEEEEeeCCC
Q 023513 90 ALGIDPDLS-GALAVLKSDHN 109 (281)
Q Consensus 90 ILGIDPGl~-gGyaVLe~~g~ 109 (281)
+||||=|-+ .-+|+++.+|+
T Consensus 2 yiGiDiGgT~i~~~l~d~~g~ 22 (117)
T d2ap1a2 2 YYGFDIGGTKIALGVFDSTRR 22 (117)
T ss_dssp EEEEEECSSEEEEEEEETTCC
T ss_pred EEEEEECcceEEEEEEeCCCC
Confidence 599999988 59999998874
Done!