Query 023514
Match_columns 281
No_of_seqs 157 out of 957
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 04:36:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023514.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023514hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3866 PelB Pectate lyase [Ca 100.0 6.1E-57 1.3E-61 410.3 23.5 235 13-253 28-288 (345)
2 PF00544 Pec_lyase_C: Pectate 100.0 1.9E-52 4.2E-57 369.0 14.7 177 61-238 3-200 (200)
3 smart00656 Amb_all Amb_all dom 100.0 8.7E-49 1.9E-53 343.3 20.5 168 73-241 10-189 (190)
4 TIGR03805 beta_helix_1 paralle 99.3 2.6E-10 5.7E-15 107.3 20.6 87 49-140 1-96 (314)
5 PF14592 Chondroitinas_B: Chon 99.0 5.4E-09 1.2E-13 101.4 14.3 195 38-242 1-258 (425)
6 TIGR03808 RR_plus_rpt_1 twin-a 98.6 5.6E-06 1.2E-10 80.9 20.6 182 47-243 55-285 (455)
7 PF12708 Pectate_lyase_3: Pect 98.5 2.8E-05 6E-10 67.8 18.6 176 48-242 20-221 (225)
8 PF13229 Beta_helix: Right han 98.4 1E-05 2.2E-10 66.1 13.0 135 96-244 2-140 (158)
9 PLN02218 polygalacturonase ADP 98.4 1.2E-05 2.7E-10 78.9 15.4 103 98-204 219-323 (431)
10 PLN03003 Probable polygalactur 98.3 2.2E-05 4.7E-10 77.5 16.1 103 98-204 165-269 (456)
11 PLN02793 Probable polygalactur 98.3 1.4E-05 2.9E-10 78.9 14.2 103 98-204 204-308 (443)
12 PLN02218 polygalacturonase ADP 98.3 0.00013 2.8E-09 71.7 20.7 137 97-247 195-351 (431)
13 PLN02155 polygalacturonase 98.3 1.4E-05 3E-10 77.7 13.3 100 100-203 174-275 (394)
14 PLN02188 polygalacturonase/gly 98.2 2.5E-05 5.3E-10 76.2 14.2 93 101-196 185-279 (404)
15 TIGR03805 beta_helix_1 paralle 98.2 0.00016 3.5E-09 68.2 19.2 90 78-173 62-158 (314)
16 PLN02480 Probable pectinestera 98.0 0.001 2.2E-08 63.7 20.4 103 42-147 53-182 (343)
17 PF00295 Glyco_hydro_28: Glyco 98.0 3.9E-05 8.5E-10 72.6 10.7 104 97-204 118-223 (326)
18 PLN03010 polygalacturonase 98.0 0.00071 1.5E-08 66.2 19.1 99 101-203 187-287 (409)
19 PLN03010 polygalacturonase 97.9 0.00071 1.5E-08 66.1 17.6 154 79-247 139-316 (409)
20 PF01696 Adeno_E1B_55K: Adenov 97.9 0.0013 2.9E-08 63.4 19.1 183 34-242 47-241 (386)
21 PF13229 Beta_helix: Right han 97.9 0.00025 5.4E-09 57.8 11.7 129 96-238 25-158 (158)
22 PLN03003 Probable polygalactur 97.9 0.0014 3E-08 64.9 18.4 152 79-247 113-297 (456)
23 PLN02155 polygalacturonase 97.8 0.0014 3.1E-08 63.8 18.0 137 97-247 148-305 (394)
24 PLN02793 Probable polygalactur 97.8 0.001 2.2E-08 65.8 17.1 137 97-247 180-336 (443)
25 PLN02197 pectinesterase 97.8 0.0041 8.9E-08 63.4 20.9 198 41-241 279-543 (588)
26 PF00295 Glyco_hydro_28: Glyco 97.7 0.0006 1.3E-08 64.5 13.2 135 97-247 95-251 (326)
27 PF05048 NosD: Periplasmic cop 97.7 0.0011 2.5E-08 59.1 14.1 130 95-240 36-167 (236)
28 PF05048 NosD: Periplasmic cop 97.7 0.0028 6.1E-08 56.6 16.1 120 79-217 44-167 (236)
29 PLN02176 putative pectinestera 97.7 0.0024 5.3E-08 61.0 16.0 103 42-147 44-173 (340)
30 PLN02188 polygalacturonase/gly 97.6 0.0044 9.5E-08 60.6 17.6 137 97-247 158-316 (404)
31 PF07602 DUF1565: Protein of u 97.5 0.0077 1.7E-07 55.1 17.1 185 47-239 16-240 (246)
32 PLN02432 putative pectinestera 97.4 0.0062 1.3E-07 57.1 15.3 98 47-147 24-138 (293)
33 PLN02304 probable pectinestera 97.4 0.054 1.2E-06 52.5 21.8 104 42-148 80-213 (379)
34 PLN02497 probable pectinestera 97.4 0.043 9.3E-07 52.4 20.2 97 48-147 46-167 (331)
35 TIGR03808 RR_plus_rpt_1 twin-a 97.3 0.0041 8.9E-08 61.2 13.5 165 79-244 115-370 (455)
36 PLN02773 pectinesterase 97.3 0.05 1.1E-06 51.6 20.1 98 47-147 18-147 (317)
37 PLN02416 probable pectinestera 97.3 0.025 5.3E-07 57.4 18.9 194 42-241 235-495 (541)
38 COG5434 PGU1 Endopygalactoruna 97.3 0.0088 1.9E-07 60.4 15.1 115 79-203 247-375 (542)
39 PF01095 Pectinesterase: Pecti 97.3 0.039 8.5E-07 51.8 18.7 109 48-164 14-146 (298)
40 PLN02682 pectinesterase family 97.2 0.08 1.7E-06 51.2 20.6 98 48-148 84-214 (369)
41 COG3420 NosD Nitrous oxidase a 97.2 0.021 4.5E-07 54.4 16.1 134 65-204 39-196 (408)
42 PLN02170 probable pectinestera 97.1 0.056 1.2E-06 54.6 19.3 192 42-242 230-482 (529)
43 PLN02634 probable pectinestera 97.1 0.095 2.1E-06 50.5 19.3 95 48-147 70-199 (359)
44 PLN02665 pectinesterase family 97.0 0.15 3.2E-06 49.4 20.6 96 48-148 82-205 (366)
45 PLN02301 pectinesterase/pectin 97.0 0.083 1.8E-06 53.7 19.5 195 42-242 241-502 (548)
46 PLN02217 probable pectinestera 97.0 0.081 1.7E-06 54.9 19.4 195 41-241 254-515 (670)
47 PLN02933 Probable pectinestera 97.0 0.13 2.7E-06 52.1 20.3 197 41-241 222-483 (530)
48 PLN02201 probable pectinestera 97.0 0.095 2.1E-06 52.9 19.2 197 42-242 211-472 (520)
49 smart00656 Amb_all Amb_all dom 97.0 0.027 5.9E-07 49.4 13.6 132 79-218 45-189 (190)
50 PLN02488 probable pectinestera 96.9 0.1 2.3E-06 52.3 19.0 195 42-242 202-463 (509)
51 PLN02990 Probable pectinestera 96.9 0.14 3E-06 52.3 20.1 196 41-242 263-526 (572)
52 PLN02745 Putative pectinestera 96.8 0.13 2.9E-06 52.7 19.2 193 42-242 290-551 (596)
53 PLN02708 Probable pectinestera 96.8 0.19 4.1E-06 51.2 19.8 150 41-196 245-449 (553)
54 PLN02468 putative pectinestera 96.7 0.16 3.4E-06 51.9 18.8 194 43-242 264-520 (565)
55 PLN02313 Pectinesterase/pectin 96.7 0.15 3.2E-06 52.3 18.6 193 43-241 281-540 (587)
56 PLN02671 pectinesterase 96.7 0.49 1.1E-05 45.7 21.0 96 48-148 73-204 (359)
57 PLN03043 Probable pectinestera 96.7 0.2 4.4E-06 50.8 19.1 188 48-241 237-491 (538)
58 PLN02995 Probable pectinestera 96.7 0.028 6.1E-07 56.9 12.8 152 42-197 228-428 (539)
59 PLN02713 Probable pectinestera 96.7 0.29 6.2E-06 50.0 20.1 195 42-242 255-519 (566)
60 PLN02506 putative pectinestera 96.6 0.17 3.7E-06 51.3 18.2 187 47-242 245-489 (537)
61 PLN02314 pectinesterase 96.6 0.032 6.9E-07 57.1 12.9 170 42-217 283-508 (586)
62 PLN02484 probable pectinestera 96.6 0.28 6E-06 50.4 19.2 197 42-241 277-538 (587)
63 PLN02916 pectinesterase family 96.5 0.44 9.5E-06 48.0 19.9 190 47-242 200-456 (502)
64 PRK10531 acyl-CoA thioesterase 96.2 0.23 5E-06 48.9 15.4 97 47-148 95-256 (422)
65 PF00544 Pec_lyase_C: Pectate 96.0 0.081 1.8E-06 46.7 10.8 114 93-215 74-200 (200)
66 PF12708 Pectate_lyase_3: Pect 96.0 0.037 7.9E-07 48.0 8.5 102 80-197 98-221 (225)
67 COG3420 NosD Nitrous oxidase a 96.0 0.35 7.7E-06 46.3 15.3 93 74-170 99-197 (408)
68 COG3866 PelB Pectate lyase [Ca 95.9 0.2 4.4E-06 47.2 12.8 141 97-241 95-251 (345)
69 PF08480 Disaggr_assoc: Disagg 94.3 0.56 1.2E-05 41.3 10.3 102 154-263 2-124 (198)
70 PF14592 Chondroitinas_B: Chon 93.4 0.33 7.2E-06 47.8 8.0 113 120-242 184-323 (425)
71 COG5434 PGU1 Endopygalactoruna 92.4 0.76 1.6E-05 46.7 9.3 133 56-197 236-399 (542)
72 COG4677 PemB Pectin methyleste 90.6 5.8 0.00013 38.0 12.5 146 47-204 95-294 (405)
73 PF12541 DUF3737: Protein of u 84.1 3.1 6.6E-05 38.6 6.3 64 101-176 17-80 (277)
74 PF12541 DUF3737: Protein of u 83.5 22 0.00047 33.2 11.6 31 185-218 195-225 (277)
75 PLN02698 Probable pectinestera 72.9 23 0.00049 35.9 9.2 119 95-217 263-418 (497)
76 TIGR03804 para_beta_helix para 69.1 11 0.00023 24.6 4.1 39 123-164 2-40 (44)
77 PF03211 Pectate_lyase: Pectat 67.4 61 0.0013 29.2 9.8 97 66-172 13-125 (215)
78 PF08480 Disaggr_assoc: Disagg 62.0 1E+02 0.0022 27.4 9.8 73 128-200 32-113 (198)
79 PF03718 Glyco_hydro_49: Glyco 53.5 79 0.0017 32.5 8.7 98 90-193 336-443 (582)
80 PF01696 Adeno_E1B_55K: Adenov 38.8 1.1E+02 0.0024 30.0 7.1 30 208-240 190-219 (386)
81 TIGR03804 para_beta_helix para 37.3 85 0.0018 20.1 4.3 41 96-141 1-41 (44)
82 PRK10123 wcaM putative colanic 30.3 3.2E+02 0.007 26.2 8.4 128 32-165 31-188 (464)
83 PF07602 DUF1565: Protein of u 28.9 4.6E+02 0.0099 24.1 10.2 73 94-171 114-193 (246)
84 PRK03174 sspH acid-soluble spo 25.4 59 0.0013 23.4 2.1 18 121-138 14-31 (59)
85 smart00710 PbH1 Parallel beta- 24.6 1.1E+02 0.0023 16.3 2.7 13 131-143 3-15 (26)
86 PF06355 Aegerolysin: Aegeroly 23.5 4.2E+02 0.0092 21.8 7.2 59 102-161 14-88 (131)
87 PRK01625 sspH acid-soluble spo 22.3 74 0.0016 22.9 2.1 18 121-138 14-31 (59)
88 TIGR02861 SASP_H small acid-so 20.5 83 0.0018 22.5 2.0 16 123-138 16-31 (58)
No 1
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.1e-57 Score=410.30 Aligned_cols=235 Identities=35% Similarity=0.538 Sum_probs=208.3
Q ss_pred hhcccCCcccccC-------CCCCCCCCCeEEEcCCCCCCChhHHHHhhcCCCeEEEEEeeeEEEec------ceeEecC
Q 023514 13 LRALAGQAEGFGR-------FAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLWIVFEVSGTIHLS------SYLSVSS 79 (281)
Q Consensus 13 ~~a~~~~a~Gfg~-------~ttGG~gg~vv~VT~l~dsg~GSLr~al~~~~pr~Ivf~vsG~I~l~------~~l~v~s 79 (281)
.++| .+.+|||+ +||||.||++++|+|.+| |..++++.+|.++|+.+.|+|+++ ..|.+.|
T Consensus 28 t~t~-~~~~GfA~~~~~~~~GTtGG~~g~~v~v~ta~~-----l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~s 101 (345)
T COG3866 28 TQTL-NSFAGFASNPAGSKTGTTGGSGGDIVTVRTAND-----LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGS 101 (345)
T ss_pred Cccc-ccccccccccCCCCCCcccCCCCcEEEEeeHHH-----HHHHhhccCceEEEEEEcceEeccCCCCceEEEeecc
Confidence 3445 46899986 489999999999999999 999999999997777799999987 4677889
Q ss_pred ceeEEeeccceEEecCcEEEeeeccEEEeeeEEecCCCCCC--CcEEEcCCCceEEEeeeeeec--------CCCCeeEe
Q 023514 80 YKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDV--DGIQIKPNSRHIWIDRCSLRD--------YDDGLIDI 149 (281)
Q Consensus 80 n~TI~G~G~g~~I~G~gi~i~~a~NVIIrnL~i~~g~~~~~--DaI~i~~~s~nVwIDHcs~s~--------~~Dg~id~ 149 (281)
||||.|.|..++|.|++|.|+.+.|||||||+|++-..+|. |+|+|..+++|||||||+|.. ..||++|+
T Consensus 102 NkTivG~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Di 181 (345)
T COG3866 102 NKTIVGSGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDI 181 (345)
T ss_pred ccEEEeeccccEEEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEe
Confidence 99999999999999999999999999999999998655444 999996689999999999998 68999999
Q ss_pred eeCCccEEEeccEEccCCceeeecCCCCC-CCCcceEEEEeceeecCCCCCCccccCCeEEEEcceEeCCcceeEEeccC
Q 023514 150 TRQSTDITVSRCYFTQHDKTMLIGADPSH-VGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVE 228 (281)
Q Consensus 150 ~~~s~nVTIS~~~f~~h~k~~liG~~~~~-~~d~~~~vT~hhN~f~~~~~R~Pr~r~g~~hv~NN~~~n~~~~~i~~~~~ 228 (281)
++++++||||||+|++|+|++|+|++|+. .+|++.+||+|||||.|+.+|+||+|+|.+|+|||||+....+++..+++
T Consensus 182 k~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRfG~vHvyNNYy~~~~~~g~a~~iG 261 (345)
T COG3866 182 KKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRFGMVHVYNNYYEGNPKFGVAITIG 261 (345)
T ss_pred ccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEeccccccccccCCceEeeEEEEeccccccCcccceEEeec
Confidence 99999999999999999999999999975 56788999999999999999999999999999999999777666655555
Q ss_pred --ceEEEEceEEecCCcceeeeecccc
Q 023514 229 --SQIYSQCNIYEAGQKKRTFEYYTEK 253 (281)
Q Consensus 229 --a~v~~e~N~F~~g~~~~~~~~~~~~ 253 (281)
|++++|+|||+.+..+..|-.....
T Consensus 262 ~~AkiyvE~NyF~~~~~~~~f~dt~~~ 288 (345)
T COG3866 262 TSAKIYVENNYFENGSEGLGFLDTKGT 288 (345)
T ss_pred cceEEEEecceeccCCCCceeeecCCc
Confidence 9999999999998777665444333
No 2
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=100.00 E-value=1.9e-52 Score=369.03 Aligned_cols=177 Identities=46% Similarity=0.737 Sum_probs=158.0
Q ss_pred EEEEeeeEEEecceeEecCceeEEeeccceEEecCcEEEe-eeccEEEeeeEEecC----------C--CCCCCcEEEcC
Q 023514 61 IVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLK-ECEHVIICNLEFEGG----------R--GHDVDGIQIKP 127 (281)
Q Consensus 61 Ivf~vsG~I~l~~~l~v~sn~TI~G~G~g~~I~G~gi~i~-~a~NVIIrnL~i~~g----------~--~~~~DaI~i~~ 127 (281)
+||+++|+|+++.+|.|.|||||+|+|.+++|.+.|+.+. +++|||||||+|+.. . ..+.|+|++.
T Consensus 3 ~ii~~~g~i~~~~~i~v~snkTi~G~g~~~~i~~~G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~- 81 (200)
T PF00544_consen 3 LIIKVSGTIDLKSPISVGSNKTIIGIGAGATIIGGGLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISID- 81 (200)
T ss_dssp EEEEEHHCCHHHCEEEEESSEEEEEETTTTEEESSEEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEE-
T ss_pred EEEEEEeEEccCCeEEECCCcEEEEccCCeEEECceEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEE-
Confidence 4677999999999999999999999999999999999997 899999999999982 1 2578999998
Q ss_pred CCceEEEeeeeeecC--------CCCeeEeeeCCccEEEeccEEccCCceeeecCCCCCCCCcceEEEEeceeecCCCCC
Q 023514 128 NSRHIWIDRCSLRDY--------DDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQR 199 (281)
Q Consensus 128 ~s~nVwIDHcs~s~~--------~Dg~id~~~~s~nVTIS~~~f~~h~k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R 199 (281)
+++|||||||+|+|+ .||++|++.++++||||||+|++|.|++|+|+++....+..+++|||||||+++.+|
T Consensus 82 ~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f~~~~~R 161 (200)
T PF00544_consen 82 NSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYFANTNSR 161 (200)
T ss_dssp STEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTTEEEEEES-EEEEEEE-
T ss_pred ecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCCceEEEEeEEECchhhC
Confidence 889999999999999 999999999999999999999999999999998877667669999999999999999
Q ss_pred CccccCCeEEEEcceEeCCcceeEEeccCceEEEEceEE
Q 023514 200 HPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIY 238 (281)
Q Consensus 200 ~Pr~r~g~~hv~NN~~~n~~~~~i~~~~~a~v~~e~N~F 238 (281)
+||+|+|++|+|||||+++..|+++++.+|++++|+|||
T Consensus 162 ~P~~r~G~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 162 NPRVRFGYVHVYNNYYYNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp TTEECSCEEEEES-EEEEECSESEEEETTEEEEEES-EE
T ss_pred CCcccccEEEEEEeeeECCCCEEEEccCCeEEEEECcCC
Confidence 999999999999999999999999999999999999999
No 3
>smart00656 Amb_all Amb_all domain.
Probab=100.00 E-value=8.7e-49 Score=343.29 Aligned_cols=168 Identities=44% Similarity=0.712 Sum_probs=158.2
Q ss_pred ceeEecCceeEEeeccceEEecCcEEEeeeccEEEeeeEEecCCC---CCCCcEEEcCCCceEEEeeeeeecC-------
Q 023514 73 SYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDY------- 142 (281)
Q Consensus 73 ~~l~v~sn~TI~G~G~g~~I~G~gi~i~~a~NVIIrnL~i~~g~~---~~~DaI~i~~~s~nVwIDHcs~s~~------- 142 (281)
.+|.|+|||||+|+|++++|.|.+|++++++|||||||+|+.+.. ++.|+|.++ ++++||||||+|+|.
T Consensus 10 ~~i~v~snkTI~G~~~~~~i~g~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~-~~~~VwIDHct~s~~~~~~~~~ 88 (190)
T smart00656 10 GTIIINSNKTIDGRGSKVEIKGGGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISID-GSSNVWIDHVSLSGCTVTGFGD 88 (190)
T ss_pred ceEEeCCCCEEEecCCCcEEEeeEEEEEecceEEEeCCEEECCccCCCCCCCEEEEe-CCCeEEEEccEeEcceeccCCC
Confidence 568999999999999999999999999889999999999998764 678999997 799999999999998
Q ss_pred --CCCeeEeeeCCccEEEeccEEccCCceeeecCCCCCCCCcceEEEEeceeecCCCCCCccccCCeEEEEcceEeCCcc
Q 023514 143 --DDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGI 220 (281)
Q Consensus 143 --~Dg~id~~~~s~nVTIS~~~f~~h~k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~r~g~~hv~NN~~~n~~~ 220 (281)
.|+++|++.++++||||||+|++|+|++|+|++++...++.++||||||||+++.+|+||+|+|++|++||||++|..
T Consensus 89 ~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~r~g~~hv~NN~~~n~~~ 168 (190)
T smart00656 89 DTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRVRFGYVHVYNNYYTGWTS 168 (190)
T ss_pred CCCCccEEECcccccEEEECceEecCCEEEEEccCCCccccccceEEEECcEEcCcccCCCcccCCEEEEEeeEEeCccc
Confidence 899999999999999999999999999999999876655678999999999999999999999999999999999999
Q ss_pred eeEEeccCceEEEEceEEecC
Q 023514 221 YAVCASVESQIYSQCNIYEAG 241 (281)
Q Consensus 221 ~~i~~~~~a~v~~e~N~F~~g 241 (281)
|+++++.++++++|+|||++.
T Consensus 169 ~~~~~~~~~~v~~E~N~F~~~ 189 (190)
T smart00656 169 YAIGGRMGATILSEGNYFEAP 189 (190)
T ss_pred EeEecCCCcEEEEECeEEECC
Confidence 999999999999999999975
No 4
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.32 E-value=2.6e-10 Score=107.31 Aligned_cols=87 Identities=26% Similarity=0.374 Sum_probs=59.1
Q ss_pred HHHHhhcCCCeEEEEEeeeEEEecceeEec-CceeEEeeccc-eEEe-------cCcEEEeeeccEEEeeeEEecCCCCC
Q 023514 49 LREGCRRREPLWIVFEVSGTIHLSSYLSVS-SYKTIDGRGQR-IKLT-------GKGLRLKECEHVIICNLEFEGGRGHD 119 (281)
Q Consensus 49 Lr~al~~~~pr~Ivf~vsG~I~l~~~l~v~-sn~TI~G~G~g-~~I~-------G~gi~i~~a~NVIIrnL~i~~g~~~~ 119 (281)
||+|+++..|...|+-..|+..+++.|.|. +++||.|.|.+ ..|. +.+|.+. ++||.|++|+++...
T Consensus 1 iQ~Ai~~A~~GDtI~l~~G~Y~~~~~l~I~~~~Iti~G~g~~~tvid~~~~~~~~~~i~v~-a~~VtI~~ltI~~~~--- 76 (314)
T TIGR03805 1 LQEALIAAQPGDTIVLPEGVFQFDRTLSLDADGVTIRGAGMDETILDFSGQVGGAEGLLVT-SDDVTLSDLAVENTK--- 76 (314)
T ss_pred CHhHHhhCCCCCEEEECCCEEEcceeEEEeCCCeEEEecCCCccEEecccCCCCCceEEEE-eCCeEEEeeEEEcCC---
Confidence 689999988876666678999888889997 89999998753 4444 2335553 777777777776532
Q ss_pred CCcEEEcCCCceEEEeeeeee
Q 023514 120 VDGIQIKPNSRHIWIDRCSLR 140 (281)
Q Consensus 120 ~DaI~i~~~s~nVwIDHcs~s 140 (281)
.+||.+. +++++.|++|.+.
T Consensus 77 ~~GI~v~-~s~~i~I~n~~i~ 96 (314)
T TIGR03805 77 GDGVKVK-GSDGIIIRRLRVE 96 (314)
T ss_pred CCeEEEe-CCCCEEEEeeEEE
Confidence 2455553 4445555555554
No 5
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=99.02 E-value=5.4e-09 Score=101.36 Aligned_cols=195 Identities=15% Similarity=0.224 Sum_probs=101.1
Q ss_pred EcCCCCCCChhHHHHhhcCCCeEEEEEeeeEEEecceeEec------CceeEEee-ccceEEecCc-EEEeeeccEEEee
Q 023514 38 VTNLSDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVS------SYKTIDGR-GQRIKLTGKG-LRLKECEHVIICN 109 (281)
Q Consensus 38 VT~l~dsg~GSLr~al~~~~pr~Ivf~vsG~I~l~~~l~v~------sn~TI~G~-G~g~~I~G~g-i~i~~a~NVIIrn 109 (281)
|+|.++ |++||+...|...|+-..|+.+ ...|.+. .++||..+ ...+.|.|.. |+|. ++.++|++
T Consensus 1 Vss~~~-----lq~Ai~~a~pGD~I~L~~Gty~-~~~i~~~~~GT~~~PItl~Ae~~G~vvi~G~s~l~i~-G~yl~v~G 73 (425)
T PF14592_consen 1 VSSVAE-----LQSAIDNAKPGDTIVLADGTYK-DVEIVFKGSGTAAKPITLRAENPGKVVITGESNLRIS-GSYLVVSG 73 (425)
T ss_dssp E-SHHH-----HHHHHHH--TT-EEEE-SEEEE-T-EEEE-S--BTTB-EEEEESSTTSEEEEES-EEEE--SSSEEEES
T ss_pred CCCHHH-----HHHHHHhCCCCCEEEECCceee-cceEEEEecccCCCCEEEEecCCCeEEEecceeEEEE-eeeEEEeC
Confidence 566666 9999999887766766899997 3355552 56899887 4567888765 6775 79999999
Q ss_pred eEEecCCCCC---------C-----CcEEEc-----------------------CCCceEEEeeeeeecC--CCCeeEee
Q 023514 110 LEFEGGRGHD---------V-----DGIQIK-----------------------PNSRHIWIDRCSLRDY--DDGLIDIT 150 (281)
Q Consensus 110 L~i~~g~~~~---------~-----DaI~i~-----------------------~~s~nVwIDHcs~s~~--~Dg~id~~ 150 (281)
|.|+.+.... . +-..+. -.+++--||||.|..- ..-.+-+.
T Consensus 74 L~F~ng~~~~~~vi~fr~~~~~~~a~~~RlT~~vi~~fn~~~~~~~~~wv~~~~l~G~~NrvDhn~F~gK~~~G~~l~V~ 153 (425)
T PF14592_consen 74 LKFKNGYTPTGAVISFRNGGDASYANHCRLTNCVIDDFNNPDREESDNWVTIYSLYGKHNRVDHNYFQGKTNRGPTLAVR 153 (425)
T ss_dssp -EEEEE---TTT--TTS--SEEE-SSS-EEES-EEES--SS-S-SEEE---TT-----S-EEES-EEE---SSS-SEEE-
T ss_pred eEEecCCCCCCceEEeecCCCcceecceEEEeEEeeccCCcccccCceEEEEEEeeccCceEEccEeeccccCCcEEEEE
Confidence 9998653110 0 001110 0123444699999752 22223322
Q ss_pred -------eCCccEEEeccEEccC-------CceeeecCCCCCCCCcceEEEEeceeecCCCCCCcccc--CCeEEEEcce
Q 023514 151 -------RQSTDITVSRCYFTQH-------DKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLR--FGKVHLYNNY 214 (281)
Q Consensus 151 -------~~s~nVTIS~~~f~~h-------~k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~r--~g~~hv~NN~ 214 (281)
....+-+|.+|+|..+ ..++-+|.+.....+ .+.++.+|||.+|++-.=-++ .+...++||.
T Consensus 154 ~~~~~~~~~~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~~~--s~t~Ve~NlFe~cdGE~EIISvKS~~N~ir~Nt 231 (425)
T PF14592_consen 154 VILNGSQSIANYHRIDHNYFGPRPPKGGNGGETIRIGTSHSSMSD--SNTTVENNLFERCDGEVEIISVKSSDNTIRNNT 231 (425)
T ss_dssp -S--SS-------EEES-EEE-E---SSS---SEEE-SSTT-B-------EEES-EEEEE-SSSEEEEEESBT-EEES-E
T ss_pred ecccCccccccCceEEeccccccCCCCCCCceeEEEecccccccc--cceeeecchhhhcCCceeEEEeecCCceEeccE
Confidence 1244678999999843 346677776433222 378899999999988754443 4667788888
Q ss_pred EeCCcceeEEeccCceEEEEceEEecCC
Q 023514 215 TRNWGIYAVCASVESQIYSQCNIYEAGQ 242 (281)
Q Consensus 215 ~~n~~~~~i~~~~~a~v~~e~N~F~~g~ 242 (281)
|++... ++..+.|-.-.+++|||....
T Consensus 232 f~es~G-~ltlRHGn~n~V~gN~FiGng 258 (425)
T PF14592_consen 232 FRESQG-SLTLRHGNRNTVEGNVFIGNG 258 (425)
T ss_dssp EES-SS-EEEEEE-SS-EEES-EEEE-S
T ss_pred EEeccc-eEEEecCCCceEeccEEecCC
Confidence 888653 666777777777888888643
No 6
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.63 E-value=5.6e-06 Score=80.91 Aligned_cols=182 Identities=18% Similarity=0.169 Sum_probs=122.4
Q ss_pred hhHHHHhhcCC-CeEEEEEeeeEEEecceeEecCceeEEeeccceE---EecCc-EE-EeeeccEEEeeeEEecCCC---
Q 023514 47 GSLREGCRRRE-PLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIK---LTGKG-LR-LKECEHVIICNLEFEGGRG--- 117 (281)
Q Consensus 47 GSLr~al~~~~-pr~Ivf~vsG~I~l~~~l~v~sn~TI~G~G~g~~---I~G~g-i~-i~~a~NVIIrnL~i~~g~~--- 117 (281)
..|++||++.. |...|.-..|+.. ..+|.+.+++||.|+. +++ |.+.+ +. -..++||.|++|+|++...
T Consensus 55 ~ALQaAIdaAa~gG~tV~Lp~G~Y~-~G~L~L~spltL~G~~-gAt~~vIdG~~~lIiai~A~nVTIsGLtIdGsG~dl~ 132 (455)
T TIGR03808 55 RALQRAIDEAARAQTPLALPPGVYR-TGPLRLPSGAQLIGVR-GATRLVFTGGPSLLSSEGADGIGLSGLTLDGGGIPLP 132 (455)
T ss_pred HHHHHHHHHhhcCCCEEEECCCcee-cccEEECCCcEEEecC-CcEEEEEcCCceEEEEecCCCeEEEeeEEEeCCCccc
Confidence 35999997743 3322333678772 4789999999999994 443 66554 22 2359999999999997542
Q ss_pred CCCCcEEEcCCCceEEEeeeeeecC-CCCeeEeeeCCccEEEeccEEccCC--ceeeecCCCCCCCCcceEEEEeceeec
Q 023514 118 HDVDGIQIKPNSRHIWIDRCSLRDY-DDGLIDITRQSTDITVSRCYFTQHD--KTMLIGADPSHVGDRCIRVTIHHCLFD 194 (281)
Q Consensus 118 ~~~DaI~i~~~s~nVwIDHcs~s~~-~Dg~id~~~~s~nVTIS~~~f~~h~--k~~liG~~~~~~~d~~~~vT~hhN~f~ 194 (281)
...-+|.+. .++++-|.+|++... ..| +.+. +++ ..|++|.+.+.. ...||.+.+ +.+.+|...
T Consensus 133 ~rdAgI~v~-~a~~v~Iedn~L~gsg~FG-I~L~-~~~-~~I~~N~I~g~~~~~I~lw~S~g---------~~V~~N~I~ 199 (455)
T TIGR03808 133 QRRGLIHCQ-GGRDVRITDCEITGSGGNG-IWLE-TVS-GDISGNTITQIAVTAIVSFDALG---------LIVARNTII 199 (455)
T ss_pred CCCCEEEEc-cCCceEEEeeEEEcCCcce-EEEE-cCc-ceEecceEeccccceEEEeccCC---------CEEECCEEE
Confidence 234577885 899999999999998 488 4553 455 777777776532 134555443 344555555
Q ss_pred CCCC------CC------------------------cccc-------CCeEEEEcceEeCCcceeEEeccCceEEEEceE
Q 023514 195 GTRQ------RH------------------------PRLR-------FGKVHLYNNYTRNWGIYAVCASVESQIYSQCNI 237 (281)
Q Consensus 195 ~~~~------R~------------------------Pr~r-------~g~~hv~NN~~~n~~~~~i~~~~~a~v~~e~N~ 237 (281)
++.. |. .... .+.+.+.+|.+.+..+-++..-......+.+|.
T Consensus 200 g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~nsss~~~i~~N~ 279 (455)
T TIGR03808 200 GANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCDYSAVRGNSASNIQITGNS 279 (455)
T ss_pred ccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccccceEEEEcccCcEEECcE
Confidence 5444 32 1111 134678888888877668888888889999999
Q ss_pred EecCCc
Q 023514 238 YEAGQK 243 (281)
Q Consensus 238 F~~g~~ 243 (281)
|.....
T Consensus 280 ~~~~R~ 285 (455)
T TIGR03808 280 VSDVRE 285 (455)
T ss_pred eeeeee
Confidence 996543
No 7
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=98.45 E-value=2.8e-05 Score=67.77 Aligned_cols=176 Identities=19% Similarity=0.247 Sum_probs=102.5
Q ss_pred hHHHHh--hcCCCeEEEEEeeeEEEecceeEecCceeEEeeccce-EEe--cC--cE-------EEee-ecc--EEEeee
Q 023514 48 SLREGC--RRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRI-KLT--GK--GL-------RLKE-CEH--VIICNL 110 (281)
Q Consensus 48 SLr~al--~~~~pr~Ivf~vsG~I~l~~~l~v~sn~TI~G~G~g~-~I~--G~--gi-------~i~~-a~N--VIIrnL 110 (281)
.||+|| .+....-+|+-..|++.++++|.+.++++|.|.|... .+. +. .+ .+.. ..+ +.|+||
T Consensus 20 Aiq~Ai~~~~~~~g~~v~~P~G~Y~i~~~l~~~s~v~l~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~nl 99 (225)
T PF12708_consen 20 AIQAAIDAAAAAGGGVVYFPPGTYRISGTLIIPSNVTLRGAGGNSTILFLSGSGDSFSVVPGIGVFDSGNSNIGIQIRNL 99 (225)
T ss_dssp HHHHHHHHHCSTTSEEEEE-SEEEEESS-EEE-TTEEEEESSTTTEEEEECTTTSTSCCEEEEEECCSCSCCEEEEEEEE
T ss_pred HHHHhhhhcccCCCeEEEEcCcEEEEeCCeEcCCCeEEEccCCCeeEEEecCcccccccccceeeeecCCCCceEEEEee
Confidence 499999 3344444555589999999999999999999997643 333 11 11 1111 122 449999
Q ss_pred EEecCCCCC---CCcEEEcCCCceEEEeeeeeecCCCCeeEeeeCCccEEEe------ccEEccCCceeeecCCCCCCCC
Q 023514 111 EFEGGRGHD---VDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVS------RCYFTQHDKTMLIGADPSHVGD 181 (281)
Q Consensus 111 ~i~~g~~~~---~DaI~i~~~s~nVwIDHcs~s~~~Dg~id~~~~s~nVTIS------~~~f~~h~k~~liG~~~~~~~d 181 (281)
+|....... ..++.+. .++++||++|++.......+.+. ..+..++. ++.+++...
T Consensus 100 ~i~~~~~~~~~~~~~i~~~-~~~~~~i~nv~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~------------- 164 (225)
T PF12708_consen 100 TIDGNGIDPNNNNNGIRFN-SSQNVSISNVRIENSGGDGIYFN-TGTDYRIIGSTHVSGIFIDNGSN------------- 164 (225)
T ss_dssp EEEETCGCE-SCEEEEEET-TEEEEEEEEEEEES-SS-SEEEE-CCEECEEECCEEEEEEEEESCEE-------------
T ss_pred EEEcccccCCCCceEEEEE-eCCeEEEEeEEEEccCccEEEEE-ccccCcEeecccceeeeecccee-------------
Confidence 999875322 4678886 78999999999998644445443 12222222 222222110
Q ss_pred cceEEEEeceeecCCCCCCccccCCeEEEEcceEeCCcceeEEeccCceEEEEceEEecCC
Q 023514 182 RCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQ 242 (281)
Q Consensus 182 ~~~~vT~hhN~f~~~~~R~Pr~r~g~~hv~NN~~~n~~~~~i~~~~~a~v~~e~N~F~~g~ 242 (281)
.+.....++.....- .....-.+.+.|+++.+....++....+..+.+++|.|++..
T Consensus 165 ---~~~~~~~~~~~~~~g-~~~~~~~~~i~n~~~~~~~~~gi~i~~~~~~~i~n~~i~~~~ 221 (225)
T PF12708_consen 165 ---NVIVNNCIFNGGDNG-IILGNNNITISNNTFEGNCGNGINIEGGSNIIISNNTIENCD 221 (225)
T ss_dssp ---EEEEECEEEESSSCS-EECEEEEEEEECEEEESSSSESEEEEECSEEEEEEEEEESSS
T ss_pred ---EEEECCccccCCCce-eEeecceEEEEeEEECCccceeEEEECCeEEEEEeEEEECCc
Confidence 111122222221111 100102567888888886668888888888999999998764
No 8
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.37 E-value=1e-05 Score=66.14 Aligned_cols=135 Identities=18% Similarity=0.276 Sum_probs=89.0
Q ss_pred cEEEeeeccEEEeeeEEecCCCCCCCcEEEcCCCceEEEeeeeeecCCCCeeEeeeCCccEEEeccEEccCCceeeecCC
Q 023514 96 GLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGAD 175 (281)
Q Consensus 96 gi~i~~a~NVIIrnL~i~~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~id~~~~s~nVTIS~~~f~~h~k~~liG~~ 175 (281)
||.+.+..++.|++.+|+.. ..+||.+. .+..+.|++|+|.+...+ +.+. ...++++++|.|.+...+..+-..
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~---~~~gi~~~-~~~~~~i~n~~i~~~~~g-i~~~-~~~~~~i~~~~~~~~~~~i~~~~~ 75 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNN---GGDGIHVS-GSSNITIENCTISNGGYG-IYVS-GGSNVTISNNTISDNGSGIYVSGS 75 (158)
T ss_dssp CEEETTCEC-EEESEEEESS---SSECEEE--SSCESEEES-EEESSTTS-EEEE-CCES-EEES-EEES-SEEEECCS-
T ss_pred EEEEECCcCeEEeeeEEEeC---CCeEEEEE-cCCCeEEECeEEECCCcE-EEEe-cCCCeEEECeEEEEccceEEEEec
Confidence 57787788899999999985 46889886 666789999999995555 5563 458899999999987744444322
Q ss_pred CCCCCCcceEEEEeceeecCCCCCCcccc--CCeEEEEcceEeCCcceeEEeccCc--eEEEEceEEecCCcc
Q 023514 176 PSHVGDRCIRVTIHHCLFDGTRQRHPRLR--FGKVHLYNNYTRNWGIYAVCASVES--QIYSQCNIYEAGQKK 244 (281)
Q Consensus 176 ~~~~~d~~~~vT~hhN~f~~~~~R~Pr~r--~g~~hv~NN~~~n~~~~~i~~~~~a--~v~~e~N~F~~g~~~ 244 (281)
. .+++.+|.+.++..-.=.+. ...+.+.||.+.+....++...... .+.+++|.|......
T Consensus 76 ~--------~~~i~~~~i~~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i~~n~i~~~~~~ 140 (158)
T PF13229_consen 76 S--------NITIENNRIENNGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGGSSPNVTIENNTISNNGGN 140 (158)
T ss_dssp C--------S-EEES-EEECSSS-SCE-TCEECS-EEES-EEECCTTSSCEEEECC--S-EEECEEEECESSE
T ss_pred C--------CceecCcEEEcCCCccEEEeccCCCEEEEeEEEEeCcceeEEEECCCCCeEEEEEEEEEeCcce
Confidence 1 57888888887765443333 2357889999988877777777665 888999999876533
No 9
>PLN02218 polygalacturonase ADPG
Probab=98.36 E-value=1.2e-05 Score=78.89 Aligned_cols=103 Identities=20% Similarity=0.323 Sum_probs=75.9
Q ss_pred EEeeeccEEEeeeEEecCC-CCCCCcEEEcCCCceEEEeeeeeecCCCCeeEeeeCCccEEEeccEEccCCceeeecCCC
Q 023514 98 RLKECEHVIICNLEFEGGR-GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADP 176 (281)
Q Consensus 98 ~i~~a~NVIIrnL~i~~g~-~~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~id~~~~s~nVTIS~~~f~~h~k~~liG~~~ 176 (281)
.+..++||.|++|+|.... ....|||.+. .++||.|.+|.++.+.|- +.++.+++||+|++|.+. +..+.-||+..
T Consensus 219 ~~~~~~nV~i~~v~I~a~~~spNTDGIdi~-ss~nV~I~n~~I~tGDDc-IaIksgs~nI~I~n~~c~-~GHGisIGS~g 295 (431)
T PLN02218 219 SIEKCSNVQVSNVVVTAPADSPNTDGIHIT-NTQNIRVSNSIIGTGDDC-ISIESGSQNVQINDITCG-PGHGISIGSLG 295 (431)
T ss_pred EEEceeeEEEEEEEEeCCCCCCCCCcEeec-ccceEEEEccEEecCCce-EEecCCCceEEEEeEEEE-CCCCEEECcCC
Confidence 3345788888888887643 3567999997 889999999999998776 789889999999999985 33456688754
Q ss_pred CCC-CCcceEEEEeceeecCCCCCCcccc
Q 023514 177 SHV-GDRCIRVTIHHCLFDGTRQRHPRLR 204 (281)
Q Consensus 177 ~~~-~d~~~~vT~hhN~f~~~~~R~Pr~r 204 (281)
... .+.-.+|++.++.|.++. +.=|++
T Consensus 296 ~~~~~~~V~nV~v~n~~~~~t~-nGvRIK 323 (431)
T PLN02218 296 DDNSKAFVSGVTVDGAKLSGTD-NGVRIK 323 (431)
T ss_pred CCCCCceEEEEEEEccEEecCC-cceEEe
Confidence 322 222348999999887753 444453
No 10
>PLN03003 Probable polygalacturonase At3g15720
Probab=98.32 E-value=2.2e-05 Score=77.53 Aligned_cols=103 Identities=24% Similarity=0.414 Sum_probs=75.7
Q ss_pred EEeeeccEEEeeeEEecCC-CCCCCcEEEcCCCceEEEeeeeeecCCCCeeEeeeCCccEEEeccEEccCCceeeecCCC
Q 023514 98 RLKECEHVIICNLEFEGGR-GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADP 176 (281)
Q Consensus 98 ~i~~a~NVIIrnL~i~~g~-~~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~id~~~~s~nVTIS~~~f~~h~k~~liG~~~ 176 (281)
.+..++||.|++|+|.... ..+.|||.+. .++||+|.+|.++.+.|. +.++.+++||+|++|.+.. ..+.-||+..
T Consensus 165 ~i~~c~nV~i~~l~I~ap~~spNTDGIDi~-~S~nV~I~n~~I~tGDDC-Iaiksgs~NI~I~n~~c~~-GHGISIGSlg 241 (456)
T PLN03003 165 HISECNYVTISSLRINAPESSPNTDGIDVG-ASSNVVIQDCIIATGDDC-IAINSGTSNIHISGIDCGP-GHGISIGSLG 241 (456)
T ss_pred EEeccccEEEEEEEEeCCCCCCCCCcEeec-CcceEEEEecEEecCCCe-EEeCCCCccEEEEeeEEEC-CCCeEEeecc
Confidence 3345677777777777653 4567999997 889999999999998887 7888889999999999863 3356778754
Q ss_pred CCC-CCcceEEEEeceeecCCCCCCcccc
Q 023514 177 SHV-GDRCIRVTIHHCLFDGTRQRHPRLR 204 (281)
Q Consensus 177 ~~~-~d~~~~vT~hhN~f~~~~~R~Pr~r 204 (281)
... .+.-.+|++.++.|.++. +.=|++
T Consensus 242 ~~g~~~~V~NV~v~n~~~~~T~-nGvRIK 269 (456)
T PLN03003 242 KDGETATVENVCVQNCNFRGTM-NGARIK 269 (456)
T ss_pred CCCCcceEEEEEEEeeEEECCC-cEEEEE
Confidence 322 122358999999998753 334554
No 11
>PLN02793 Probable polygalacturonase
Probab=98.30 E-value=1.4e-05 Score=78.87 Aligned_cols=103 Identities=22% Similarity=0.321 Sum_probs=74.1
Q ss_pred EEeeeccEEEeeeEEecCC-CCCCCcEEEcCCCceEEEeeeeeecCCCCeeEeeeCCccEEEeccEEccCCceeeecCCC
Q 023514 98 RLKECEHVIICNLEFEGGR-GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADP 176 (281)
Q Consensus 98 ~i~~a~NVIIrnL~i~~g~-~~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~id~~~~s~nVTIS~~~f~~h~k~~liG~~~ 176 (281)
.+..++||.|++|+|.... ..+.|||.+. .++||+|.+|.+..+.|. +.++.+++||+|++|.+.. ..+.-||+..
T Consensus 204 ~~~~~~nv~i~~l~I~~p~~spNTDGIdi~-~s~nV~I~n~~I~~gDDc-Iaik~~s~nI~I~n~~c~~-GhGisIGSlg 280 (443)
T PLN02793 204 AFTNCRRVTISGLKVIAPATSPNTDGIHIS-ASRGVVIKDSIVRTGDDC-ISIVGNSSRIKIRNIACGP-GHGISIGSLG 280 (443)
T ss_pred EEEccCcEEEEEEEEECCCCCCCCCcEeee-ccceEEEEeCEEeCCCCe-EEecCCcCCEEEEEeEEeC-CccEEEeccc
Confidence 3345677777777776643 3567999997 899999999999988777 7787889999999999853 2356678743
Q ss_pred CC-CCCcceEEEEeceeecCCCCCCcccc
Q 023514 177 SH-VGDRCIRVTIHHCLFDGTRQRHPRLR 204 (281)
Q Consensus 177 ~~-~~d~~~~vT~hhN~f~~~~~R~Pr~r 204 (281)
.. ....-.+|++.++.+.++. +.=|++
T Consensus 281 ~~~~~~~V~nV~v~n~~~~~t~-~GirIK 308 (443)
T PLN02793 281 KSNSWSEVRDITVDGAFLSNTD-NGVRIK 308 (443)
T ss_pred CcCCCCcEEEEEEEccEEeCCC-ceEEEE
Confidence 21 1122347999999888753 444443
No 12
>PLN02218 polygalacturonase ADPG
Probab=98.29 E-value=0.00013 Score=71.73 Aligned_cols=137 Identities=17% Similarity=0.157 Sum_probs=94.3
Q ss_pred EEEeeeccEEEeeeEEecCCCCCCCcEEEcCCCceEEEeeeeeec-----CCCCeeEeeeCCccEEEeccEEccCCceee
Q 023514 97 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD-----YDDGLIDITRQSTDITVSRCYFTQHDKTML 171 (281)
Q Consensus 97 i~i~~a~NVIIrnL~i~~g~~~~~DaI~i~~~s~nVwIDHcs~s~-----~~Dg~id~~~~s~nVTIS~~~f~~h~k~~l 171 (281)
|.+.+++|+.|++|+++....| .+.+. .+++|+|++.++.. ..|| +|+ ..+.+|+|++|.|..-+-+.-
T Consensus 195 i~f~~~~nv~I~gitl~nSp~w---~i~~~-~~~nV~i~~v~I~a~~~spNTDG-Idi-~ss~nV~I~n~~I~tGDDcIa 268 (431)
T PLN02218 195 LTFYNSKSLIVKNLRVRNAQQI---QISIE-KCSNVQVSNVVVTAPADSPNTDG-IHI-TNTQNIRVSNSIIGTGDDCIS 268 (431)
T ss_pred EEEEccccEEEeCeEEEcCCCE---EEEEE-ceeeEEEEEEEEeCCCCCCCCCc-Eee-cccceEEEEccEEecCCceEE
Confidence 4566899999999999997655 36776 88999999999864 5688 788 468999999999998887777
Q ss_pred ecCCCCCCCCcceEEEEeceeecCCCC-------CCccc-cCCeEEEEcceEeCCcceeEEe-----c--cCceEEEEce
Q 023514 172 IGADPSHVGDRCIRVTIHHCLFDGTRQ-------RHPRL-RFGKVHLYNNYTRNWGIYAVCA-----S--VESQIYSQCN 236 (281)
Q Consensus 172 iG~~~~~~~d~~~~vT~hhN~f~~~~~-------R~Pr~-r~g~~hv~NN~~~n~~~~~i~~-----~--~~a~v~~e~N 236 (281)
+.++. .+|++.++++..... +.+.- ..-.+++.|+.+.+.. .++.. + .-..|.+|+.
T Consensus 269 Iksgs-------~nI~I~n~~c~~GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t~-nGvRIKT~~Gg~G~v~nI~f~ni 340 (431)
T PLN02218 269 IESGS-------QNVQINDITCGPGHGISIGSLGDDNSKAFVSGVTVDGAKLSGTD-NGVRIKTYQGGSGTASNIIFQNI 340 (431)
T ss_pred ecCCC-------ceEEEEeEEEECCCCEEECcCCCCCCCceEEEEEEEccEEecCC-cceEEeecCCCCeEEEEEEEEeE
Confidence 76542 268888877743211 11100 0014677777777643 34321 1 2236788888
Q ss_pred EEecCCcceee
Q 023514 237 IYEAGQKKRTF 247 (281)
Q Consensus 237 ~F~~g~~~~~~ 247 (281)
.+++...+..+
T Consensus 341 ~m~~V~~pI~I 351 (431)
T PLN02218 341 QMENVKNPIII 351 (431)
T ss_pred EEEcccccEEE
Confidence 88887666554
No 13
>PLN02155 polygalacturonase
Probab=98.27 E-value=1.4e-05 Score=77.65 Aligned_cols=100 Identities=17% Similarity=0.321 Sum_probs=74.0
Q ss_pred eeeccEEEeeeEEecCC-CCCCCcEEEcCCCceEEEeeeeeecCCCCeeEeeeCCccEEEeccEEccCCceeeecCCCCC
Q 023514 100 KECEHVIICNLEFEGGR-GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSH 178 (281)
Q Consensus 100 ~~a~NVIIrnL~i~~g~-~~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~id~~~~s~nVTIS~~~f~~h~k~~liG~~~~~ 178 (281)
..++||.|++|+|.... ..+.|||.+. .++||+|.+|.+..+.|. +.++.+++||+|++|.+.. ..++-||+....
T Consensus 174 ~~~~nv~i~~v~I~~p~~~~NtDGidi~-~s~nV~I~~~~I~~gDDc-Iaik~gs~nI~I~n~~c~~-GhGisIGS~g~~ 250 (394)
T PLN02155 174 NGCTNVVVRNVKLVAPGNSPNTDGFHVQ-FSTGVTFTGSTVQTGDDC-VAIGPGTRNFLITKLACGP-GHGVSIGSLAKE 250 (394)
T ss_pred ECeeeEEEEEEEEECCCCCCCCCccccc-cceeEEEEeeEEecCCce-EEcCCCCceEEEEEEEEEC-CceEEecccccc
Confidence 35677777777777643 3567999997 899999999999999886 7888889999999998874 335678885322
Q ss_pred -CCCcceEEEEeceeecCCCCCCccc
Q 023514 179 -VGDRCIRVTIHHCLFDGTRQRHPRL 203 (281)
Q Consensus 179 -~~d~~~~vT~hhN~f~~~~~R~Pr~ 203 (281)
....-.+|++.++.|.++. |.=|+
T Consensus 251 ~~~~~V~nV~v~n~~~~~t~-~GirI 275 (394)
T PLN02155 251 LNEDGVENVTVSSSVFTGSQ-NGVRI 275 (394)
T ss_pred CCCCcEEEEEEEeeEEeCCC-cEEEE
Confidence 1223348999999998753 33344
No 14
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=98.23 E-value=2.5e-05 Score=76.21 Aligned_cols=93 Identities=22% Similarity=0.384 Sum_probs=70.1
Q ss_pred eeccEEEeeeEEecCC-CCCCCcEEEcCCCceEEEeeeeeecCCCCeeEeeeCCccEEEeccEEccCCceeeecCCCCC-
Q 023514 101 ECEHVIICNLEFEGGR-GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSH- 178 (281)
Q Consensus 101 ~a~NVIIrnL~i~~g~-~~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~id~~~~s~nVTIS~~~f~~h~k~~liG~~~~~- 178 (281)
.++||.|++|+|.... ....|||.+. .+++|+|.+|.+..+.|. +.++.++++|+|+++... +..++-+|+-...
T Consensus 185 ~~~~v~i~~v~I~~~~~spNtDGidi~-~s~nV~I~n~~I~~GDDc-Iaiksg~~nI~I~n~~c~-~ghGisiGSlG~~~ 261 (404)
T PLN02188 185 ECRNFKGSGLKISAPSDSPNTDGIHIE-RSSGVYISDSRIGTGDDC-ISIGQGNSQVTITRIRCG-PGHGISVGSLGRYP 261 (404)
T ss_pred ccccEEEEEEEEeCCCCCCCCCcEeee-CcccEEEEeeEEeCCCcE-EEEccCCccEEEEEEEEc-CCCcEEeCCCCCCC
Confidence 4677777777776543 3567999997 889999999999999886 778888999999999885 3346778873221
Q ss_pred CCCcceEEEEeceeecCC
Q 023514 179 VGDRCIRVTIHHCLFDGT 196 (281)
Q Consensus 179 ~~d~~~~vT~hhN~f~~~ 196 (281)
....-.+|++.++.|.++
T Consensus 262 ~~~~V~nV~v~n~~~~~t 279 (404)
T PLN02188 262 NEGDVTGLVVRDCTFTGT 279 (404)
T ss_pred cCCcEEEEEEEeeEEECC
Confidence 112235899999998876
No 15
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.23 E-value=0.00016 Score=68.23 Aligned_cols=90 Identities=23% Similarity=0.290 Sum_probs=65.2
Q ss_pred cCceeEEeeccceEEe---cCcEEEeeeccEEEeeeEEecCCC----CCCCcEEEcCCCceEEEeeeeeecCCCCeeEee
Q 023514 78 SSYKTIDGRGQRIKLT---GKGLRLKECEHVIICNLEFEGGRG----HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDIT 150 (281)
Q Consensus 78 ~sn~TI~G~G~g~~I~---G~gi~i~~a~NVIIrnL~i~~g~~----~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~id~~ 150 (281)
.+++||.+. +|. +.+|.+.++++++||++++..... ...+||.+. .++++.|++|.++...|.-+-+
T Consensus 62 a~~VtI~~l----tI~~~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~-~s~~v~I~~n~i~g~~d~GIyv- 135 (314)
T TIGR03805 62 SDDVTLSDL----AVENTKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPV-ESTNVLVEDSYVRGASDAGIYV- 135 (314)
T ss_pred eCCeEEEee----EEEcCCCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEe-ccCCEEEECCEEECCCcccEEE-
Confidence 356666665 232 346888889999999999974321 236788887 7899999999998877744555
Q ss_pred eCCccEEEeccEEccCCceeeec
Q 023514 151 RQSTDITVSRCYFTQHDKTMLIG 173 (281)
Q Consensus 151 ~~s~nVTIS~~~f~~h~k~~liG 173 (281)
..+++++|++|.+.+..++..+-
T Consensus 136 ~~s~~~~v~nN~~~~n~~GI~i~ 158 (314)
T TIGR03805 136 GQSQNIVVRNNVAEENVAGIEIE 158 (314)
T ss_pred CCCCCeEEECCEEccCcceEEEE
Confidence 36788999999887666655553
No 16
>PLN02480 Probable pectinesterase
Probab=98.03 E-value=0.001 Score=63.67 Aligned_cols=103 Identities=11% Similarity=0.227 Sum_probs=70.2
Q ss_pred CCCCCh---hHHHHhhcC----CCeEEEEEeeeEEEecceeEe---cCceeEEeeccc-eEEecC----------cEEEe
Q 023514 42 SDDGPG---SLREGCRRR----EPLWIVFEVSGTIHLSSYLSV---SSYKTIDGRGQR-IKLTGK----------GLRLK 100 (281)
Q Consensus 42 ~dsg~G---SLr~al~~~----~pr~Ivf~vsG~I~l~~~l~v---~sn~TI~G~G~g-~~I~G~----------gi~i~ 100 (281)
+.+|.| ++++||++. ..+++|+-..|+.+ +.+.| ++++||.|.+.. ..|.+. .+.+.
T Consensus 53 a~~G~g~f~TIQ~AIdaap~~~~~~~~I~Ik~GvY~--E~V~I~~~kp~ItL~G~g~~~TvI~~~~~~~~~~~saTvtV~ 130 (343)
T PLN02480 53 DINGKGDFTSVQSAIDAVPVGNSEWIIVHLRKGVYR--EKVHIPENKPFIFMRGNGKGRTSIVWSQSSSDNAASATFTVE 130 (343)
T ss_pred CCCCCCCcccHHHHHhhCccCCCceEEEEEcCcEEE--EEEEECCCCceEEEEecCCCCeEEEccccccCCCCceEEEEE
Confidence 344544 899999763 23566666789984 67778 467999998743 334321 25564
Q ss_pred eeccEEEeeeEEecCCC------CCCCcEEEcCCCceEEEeeeeeecCCCCee
Q 023514 101 ECEHVIICNLEFEGGRG------HDVDGIQIKPNSRHIWIDRCSLRDYDDGLI 147 (281)
Q Consensus 101 ~a~NVIIrnL~i~~g~~------~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~i 147 (281)
+++++++||+|++... ...-|+.+.-.+.++.+.+|.|.-..|-++
T Consensus 131 -a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy 182 (343)
T PLN02480 131 -APHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLF 182 (343)
T ss_pred -CCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeE
Confidence 8999999999998632 123455554457899999999976666554
No 17
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=98.03 E-value=3.9e-05 Score=72.60 Aligned_cols=104 Identities=26% Similarity=0.486 Sum_probs=76.0
Q ss_pred EEEeeeccEEEeeeEEecCC-CCCCCcEEEcCCCceEEEeeeeeecCCCCeeEeeeCCccEEEeccEEccCCceeeecCC
Q 023514 97 LRLKECEHVIICNLEFEGGR-GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGAD 175 (281)
Q Consensus 97 i~i~~a~NVIIrnL~i~~g~-~~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~id~~~~s~nVTIS~~~f~~h~k~~liG~~ 175 (281)
+.+..++||.|++|+|+... ....|||.+. ++++|.|++|.+..+.|. +.+|.++.+|+|++|.+.. ..+.-+|+.
T Consensus 118 ~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~-~s~nv~I~n~~i~~gDD~-Iaiks~~~ni~v~n~~~~~-ghGisiGS~ 194 (326)
T PF00295_consen 118 IHINDCDNVTISNITINNPANSPNTDGIDID-SSKNVTIENCFIDNGDDC-IAIKSGSGNILVENCTCSG-GHGISIGSE 194 (326)
T ss_dssp EEEESEEEEEEESEEEEEGGGCTS--SEEEE-SEEEEEEESEEEESSSES-EEESSEECEEEEESEEEES-SSEEEEEEE
T ss_pred EEEEccCCeEEcceEEEecCCCCCcceEEEE-eeeEEEEEEeecccccCc-ccccccccceEEEeEEEec-cccceeeec
Confidence 56667899999999998754 3568999997 889999999999988777 7787777799999999974 345667764
Q ss_pred CCCCC-CcceEEEEeceeecCCCCCCcccc
Q 023514 176 PSHVG-DRCIRVTIHHCLFDGTRQRHPRLR 204 (281)
Q Consensus 176 ~~~~~-d~~~~vT~hhN~f~~~~~R~Pr~r 204 (281)
..... ..-.+|+|.++.+.++. |.-|++
T Consensus 195 ~~~~~~~~i~nV~~~n~~i~~t~-~gi~iK 223 (326)
T PF00295_consen 195 GSGGSQNDIRNVTFENCTIINTD-NGIRIK 223 (326)
T ss_dssp SSSSE--EEEEEEEEEEEEESES-EEEEEE
T ss_pred cCCccccEEEeEEEEEEEeeccc-eEEEEE
Confidence 32211 11248999999888753 554553
No 18
>PLN03010 polygalacturonase
Probab=98.00 E-value=0.00071 Score=66.17 Aligned_cols=99 Identities=23% Similarity=0.384 Sum_probs=66.0
Q ss_pred eeccEEEeeeEEecCC-CCCCCcEEEcCCCceEEEeeeeeecCCCCeeEeeeCCccEEEeccEEccCCceeeecCCCCCC
Q 023514 101 ECEHVIICNLEFEGGR-GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHV 179 (281)
Q Consensus 101 ~a~NVIIrnL~i~~g~-~~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~id~~~~s~nVTIS~~~f~~h~k~~liG~~~~~~ 179 (281)
.++||.|++|+|.... ....|||.+. .+++|+|.+|.+..+.|. +.++.++++++|.++.... .-+.-||+.....
T Consensus 187 ~~~nv~i~~i~I~a~~~s~NTDGiDi~-~s~nV~I~n~~I~~gDDc-Iaiksgs~ni~I~~~~C~~-gHGisIGS~g~~~ 263 (409)
T PLN03010 187 TCNYVAISKINILAPETSPNTDGIDIS-YSTNINIFDSTIQTGDDC-IAINSGSSNINITQINCGP-GHGISVGSLGADG 263 (409)
T ss_pred ccccEEEEEEEEeCCCCCCCCCceeee-ccceEEEEeeEEecCCCe-EEecCCCCcEEEEEEEeEC-cCCEEEccCCCCC
Confidence 4566666666665533 3567999997 889999999999988776 7788787777777655532 2255677653321
Q ss_pred -CCcceEEEEeceeecCCCCCCccc
Q 023514 180 -GDRCIRVTIHHCLFDGTRQRHPRL 203 (281)
Q Consensus 180 -~d~~~~vT~hhN~f~~~~~R~Pr~ 203 (281)
.+.-.+|++.++.+.++. +.=|+
T Consensus 264 ~~~~V~nV~v~n~~i~~t~-~GirI 287 (409)
T PLN03010 264 ANAKVSDVHVTHCTFNQTT-NGARI 287 (409)
T ss_pred CCCeeEEEEEEeeEEeCCC-cceEE
Confidence 122348899999887753 33344
No 19
>PLN03010 polygalacturonase
Probab=97.93 E-value=0.00071 Score=66.15 Aligned_cols=154 Identities=20% Similarity=0.232 Sum_probs=99.0
Q ss_pred CceeEEeeccceEEecCc------EEEeeeccEEEeeeEEecCCCCCCCcEEEcCCCceEEEeeeeee-----cCCCCee
Q 023514 79 SYKTIDGRGQRIKLTGKG------LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLR-----DYDDGLI 147 (281)
Q Consensus 79 sn~TI~G~G~g~~I~G~g------i~i~~a~NVIIrnL~i~~g~~~~~DaI~i~~~s~nVwIDHcs~s-----~~~Dg~i 147 (281)
++++|.|.| +|.|.| |.+.+++|+.|++|+++....+ .+.+. .+++|.|++..+. ...|| +
T Consensus 139 ~nv~I~G~G---~IDG~G~~ww~~l~~~~~~nv~v~gitl~nsp~~---~i~i~-~~~nv~i~~i~I~a~~~s~NTDG-i 210 (409)
T PLN03010 139 SGLMIDGSG---TIDGRGSSFWEALHISKCDNLTINGITSIDSPKN---HISIK-TCNYVAISKINILAPETSPNTDG-I 210 (409)
T ss_pred cccEEeece---EEeCCCccccceEEEEeecCeEEeeeEEEcCCce---EEEEe-ccccEEEEEEEEeCCCCCCCCCc-e
Confidence 456776653 577755 6778899999999999987654 36676 8899999999985 35788 7
Q ss_pred EeeeCCccEEEeccEEccCCceeeecCCCCCCCCcceEEEEeceeecCC-----CCCCcc-ccCCeEEEEcceEeCCcce
Q 023514 148 DITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGT-----RQRHPR-LRFGKVHLYNNYTRNWGIY 221 (281)
Q Consensus 148 d~~~~s~nVTIS~~~f~~h~k~~liG~~~~~~~d~~~~vT~hhN~f~~~-----~~R~Pr-~r~g~~hv~NN~~~n~~~~ 221 (281)
|+ ..+++|+|++|.+..-+-+.-+.++.. ..+|+.-.+...|- ..+... -..-.+++.|+.+.+.. +
T Consensus 211 Di-~~s~nV~I~n~~I~~gDDcIaiksgs~-----ni~I~~~~C~~gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t~-~ 283 (409)
T PLN03010 211 DI-SYSTNINIFDSTIQTGDDCIAINSGSS-----NINITQINCGPGHGISVGSLGADGANAKVSDVHVTHCTFNQTT-N 283 (409)
T ss_pred ee-eccceEEEEeeEEecCCCeEEecCCCC-----cEEEEEEEeECcCCEEEccCCCCCCCCeeEEEEEEeeEEeCCC-c
Confidence 88 568999999999998888888765421 12333333332211 001000 00124678888887753 3
Q ss_pred eEEe--ccC-----ceEEEEceEEecCCcceee
Q 023514 222 AVCA--SVE-----SQIYSQCNIYEAGQKKRTF 247 (281)
Q Consensus 222 ~i~~--~~~-----a~v~~e~N~F~~g~~~~~~ 247 (281)
++.. ..+ ..|.+|+-.+++...+.++
T Consensus 284 GirIKt~~G~~G~v~nItf~nI~m~~v~~pI~I 316 (409)
T PLN03010 284 GARIKTWQGGQGYARNISFENITLINTKNPIII 316 (409)
T ss_pred ceEEEEecCCCEEEEEeEEEeEEEecCCccEEE
Confidence 3332 111 3577777777776665444
No 20
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=97.92 E-value=0.0013 Score=63.41 Aligned_cols=183 Identities=17% Similarity=0.292 Sum_probs=126.3
Q ss_pred CeEEEcCCCCCCChhHHHHhhcCCCeEEEEEeeeEEEecceeEecCceeEEeeccceEEecCc---EEE---------ee
Q 023514 34 PVYFVTNLSDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKG---LRL---------KE 101 (281)
Q Consensus 34 ~vv~VT~l~dsg~GSLr~al~~~~pr~Ivf~vsG~I~l~~~l~v~sn~TI~G~G~g~~I~G~g---i~i---------~~ 101 (281)
++|.+.=-+| |.+||.+-.+ |..+.+-++.+++++.|.+..+|+|+|+.+.|.+.. |.+ .+
T Consensus 47 kt~~~~P~eD-----le~~I~~haK--VaL~Pg~~Y~i~~~V~I~~~cYIiGnGA~V~v~~~~~~~f~v~~~~~~P~V~g 119 (386)
T PF01696_consen 47 KTYWMEPGED-----LEEAIRQHAK--VALRPGAVYVIRKPVNIRSCCYIIGNGATVRVNGPDRVAFRVCMQSMGPGVVG 119 (386)
T ss_pred EEEEcCCCcC-----HHHHHHhcCE--EEeCCCCEEEEeeeEEecceEEEECCCEEEEEeCCCCceEEEEcCCCCCeEee
Confidence 3555555566 9999988662 456778888889999999999999999888886432 433 24
Q ss_pred eccEEEeeeEEecCCCCCCCcEEEcCCCceEEEeeeeeecCCCCeeEeeeCCccEEEeccEEccCCceeeecCCCCCCCC
Q 023514 102 CEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGD 181 (281)
Q Consensus 102 a~NVIIrnL~i~~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~id~~~~s~nVTIS~~~f~~h~k~~liG~~~~~~~d 181 (281)
-.+|.+.|++|..... ..|+-+. ...++.+..|.|....--.++.+ ....|..|.|..-+|+....+
T Consensus 120 M~~VtF~ni~F~~~~~--~~g~~f~-~~t~~~~hgC~F~gf~g~cl~~~---~~~~VrGC~F~~C~~gi~~~~------- 186 (386)
T PF01696_consen 120 MEGVTFVNIRFEGRDT--FSGVVFH-ANTNTLFHGCSFFGFHGTCLESW---AGGEVRGCTFYGCWKGIVSRG------- 186 (386)
T ss_pred eeeeEEEEEEEecCCc--cceeEEE-ecceEEEEeeEEecCcceeEEEc---CCcEEeeeEEEEEEEEeecCC-------
Confidence 5799999999998642 3456665 67899999999998877767664 355888999987777764321
Q ss_pred cceEEEEeceeecCCCCCCccccCCeEEEEcceEeCCcceeEEeccCceEEEEceEEecCC
Q 023514 182 RCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQ 242 (281)
Q Consensus 182 ~~~~vT~hhN~f~~~~~R~Pr~r~g~~hv~NN~~~n~~~~~i~~~~~a~v~~e~N~F~~g~ 242 (281)
+..+++.+|.|..+.-=- +..|..++.+|...+-. -.+- .+....+.+|.|....
T Consensus 187 -~~~lsVk~C~FekC~igi--~s~G~~~i~hn~~~ec~-Cf~l--~~g~g~i~~N~v~~~~ 241 (386)
T PF01696_consen 187 -KSKLSVKKCVFEKCVIGI--VSEGPARIRHNCASECG-CFVL--MKGTGSIKHNMVCGPN 241 (386)
T ss_pred -cceEEeeheeeeheEEEE--EecCCeEEecceecccc-eEEE--EcccEEEeccEEeCCC
Confidence 236777888887664322 33467777777777654 1222 2223344666666543
No 21
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.88 E-value=0.00025 Score=57.81 Aligned_cols=129 Identities=19% Similarity=0.221 Sum_probs=77.8
Q ss_pred cEEEeeeccEEEeeeEEecCCCCCCCcEEEcCCCceEEEeeeeeecCCCCeeEeeeCCccEEEeccEEccCCc-eeeecC
Q 023514 96 GLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDK-TMLIGA 174 (281)
Q Consensus 96 gi~i~~a~NVIIrnL~i~~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~id~~~~s~nVTIS~~~f~~h~k-~~liG~ 174 (281)
+|.+...+++.|++-+|.. ...+|.+. ...++.++.|.|++...+ +.+. .+..++|++|.|.+... ++.+..
T Consensus 25 gi~~~~~~~~~i~n~~i~~----~~~gi~~~-~~~~~~i~~~~~~~~~~~-i~~~-~~~~~~i~~~~i~~~~~~gi~~~~ 97 (158)
T PF13229_consen 25 GIHVSGSSNITIENCTISN----GGYGIYVS-GGSNVTISNNTISDNGSG-IYVS-GSSNITIENNRIENNGDYGIYISN 97 (158)
T ss_dssp CEEE-SSCESEEES-EEES----STTSEEEE-CCES-EEES-EEES-SEE-EECC-S-CS-EEES-EEECSSS-SCE-TC
T ss_pred EEEEEcCCCeEEECeEEEC----CCcEEEEe-cCCCeEEECeEEEEccce-EEEE-ecCCceecCcEEEcCCCccEEEec
Confidence 5777767777888888887 45778886 557888888888887733 4453 67888888888887654 444432
Q ss_pred CCCCCCCcceEEEEeceeecCCCCCCccccC-C--eEEEEcceEeCCcceeEEeccCce-EEEEceEE
Q 023514 175 DPSHVGDRCIRVTIHHCLFDGTRQRHPRLRF-G--KVHLYNNYTRNWGIYAVCASVESQ-IYSQCNIY 238 (281)
Q Consensus 175 ~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~r~-g--~~hv~NN~~~n~~~~~i~~~~~a~-v~~e~N~F 238 (281)
....+++.+|.|.++....=.+.. . .+-+.+|.+.+...+++.....+. +.+.+|.|
T Consensus 98 -------~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i~~n~i~~~~~~gi~~~~~~~~~~v~~n~~ 158 (158)
T PF13229_consen 98 -------SSSNVTIENNTIHNNGGSGIYLEGGSSPNVTIENNTISNNGGNGIYLISGSSNCTVTNNTF 158 (158)
T ss_dssp -------EECS-EEES-EEECCTTSSCEEEECC--S-EEECEEEECESSEEEE-TT-SS--EEES-E-
T ss_pred -------cCCCEEEEeEEEEeCcceeEEEECCCCCeEEEEEEEEEeCcceeEEEECCCCeEEEECCCC
Confidence 012578888888887744333332 2 567788888888778887766655 88888876
No 22
>PLN03003 Probable polygalacturonase At3g15720
Probab=97.85 E-value=0.0014 Score=64.92 Aligned_cols=152 Identities=16% Similarity=0.243 Sum_probs=103.0
Q ss_pred CceeEEeeccceEEecCc-------------EEEeeeccEEEeeeEEecCCCCCCCcEEEcCCCceEEEeeeeeec----
Q 023514 79 SYKTIDGRGQRIKLTGKG-------------LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD---- 141 (281)
Q Consensus 79 sn~TI~G~G~g~~I~G~g-------------i~i~~a~NVIIrnL~i~~g~~~~~DaI~i~~~s~nVwIDHcs~s~---- 141 (281)
.+++|.|.| +|.|.| |.+..++|+.|++|+++....+ .+.+. .+++|.|++..+..
T Consensus 113 ~~i~I~G~G---tIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp~w---~i~i~-~c~nV~i~~l~I~ap~~s 185 (456)
T PLN03003 113 EGLVIEGDG---EINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDSPMA---HIHIS-ECNYVTISSLRINAPESS 185 (456)
T ss_pred cceEEeccc---eEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecCCcE---EEEEe-ccccEEEEEEEEeCCCCC
Confidence 466776653 566543 6777899999999999987644 36666 88999999999964
Q ss_pred -CCCCeeEeeeCCccEEEeccEEccCCceeeecCCCCCCCCcceEEEEeceeecCCC-------CCCccc-cCCeEEEEc
Q 023514 142 -YDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTR-------QRHPRL-RFGKVHLYN 212 (281)
Q Consensus 142 -~~Dg~id~~~~s~nVTIS~~~f~~h~k~~liG~~~~~~~d~~~~vT~hhN~f~~~~-------~R~Pr~-r~g~~hv~N 212 (281)
..|| +|+ ..+++|+|++|.+..-+-+.-+.++.. +|++-++.+.... .+.... ..-.+++.|
T Consensus 186 pNTDG-IDi-~~S~nV~I~n~~I~tGDDCIaiksgs~-------NI~I~n~~c~~GHGISIGSlg~~g~~~~V~NV~v~n 256 (456)
T PLN03003 186 PNTDG-IDV-GASSNVVIQDCIIATGDDCIAINSGTS-------NIHISGIDCGPGHGISIGSLGKDGETATVENVCVQN 256 (456)
T ss_pred CCCCc-Eee-cCcceEEEEecEEecCCCeEEeCCCCc-------cEEEEeeEEECCCCeEEeeccCCCCcceEEEEEEEe
Confidence 4688 788 568999999999998888887765421 5666666553211 111100 011467888
Q ss_pred ceEeCCcceeEEe-----c--cCceEEEEceEEecCCcceee
Q 023514 213 NYTRNWGIYAVCA-----S--VESQIYSQCNIYEAGQKKRTF 247 (281)
Q Consensus 213 N~~~n~~~~~i~~-----~--~~a~v~~e~N~F~~g~~~~~~ 247 (281)
+.+.+.. .++.. + .-..|.+|+-.+++...+.++
T Consensus 257 ~~~~~T~-nGvRIKT~~Gg~G~v~nItf~nI~m~nV~~pI~I 297 (456)
T PLN03003 257 CNFRGTM-NGARIKTWQGGSGYARMITFNGITLDNVENPIII 297 (456)
T ss_pred eEEECCC-cEEEEEEeCCCCeEEEEEEEEeEEecCccceEEE
Confidence 8887753 34332 1 124678888888887777555
No 23
>PLN02155 polygalacturonase
Probab=97.84 E-value=0.0014 Score=63.82 Aligned_cols=137 Identities=12% Similarity=0.142 Sum_probs=93.8
Q ss_pred EEEeeeccEEEeeeEEecCCCCCCCcEEEcCCCceEEEeeeeeec-----CCCCeeEeeeCCccEEEeccEEccCCceee
Q 023514 97 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD-----YDDGLIDITRQSTDITVSRCYFTQHDKTML 171 (281)
Q Consensus 97 i~i~~a~NVIIrnL~i~~g~~~~~DaI~i~~~s~nVwIDHcs~s~-----~~Dg~id~~~~s~nVTIS~~~f~~h~k~~l 171 (281)
|.+..++||.|++|+++....| .+.+. .+++|.|+|+.+.. ..|| +|+ ..+++|+|++|.|..-+-+..
T Consensus 148 i~~~~~~nv~i~gitl~nSp~w---~i~~~-~~~nv~i~~v~I~~p~~~~NtDG-idi-~~s~nV~I~~~~I~~gDDcIa 221 (394)
T PLN02155 148 ISFNSAKDVIISGVKSMNSQVS---HMTLN-GCTNVVVRNVKLVAPGNSPNTDG-FHV-QFSTGVTFTGSTVQTGDDCVA 221 (394)
T ss_pred eeEEEeeeEEEECeEEEcCCCe---EEEEE-CeeeEEEEEEEEECCCCCCCCCc-ccc-ccceeEEEEeeEEecCCceEE
Confidence 5677899999999999987544 35665 88999999999953 4588 787 468999999999998888887
Q ss_pred ecCCCCCCCCcceEEEEeceeecC-------CCCCCcc-ccCCeEEEEcceEeCCcceeEEe----c-cC---ceEEEEc
Q 023514 172 IGADPSHVGDRCIRVTIHHCLFDG-------TRQRHPR-LRFGKVHLYNNYTRNWGIYAVCA----S-VE---SQIYSQC 235 (281)
Q Consensus 172 iG~~~~~~~d~~~~vT~hhN~f~~-------~~~R~Pr-~r~g~~hv~NN~~~n~~~~~i~~----~-~~---a~v~~e~ 235 (281)
+++... +|++.++.+.. ...+.|. -..-.+.+.|+.+.+.. +++.. + .+ ..|.+++
T Consensus 222 ik~gs~-------nI~I~n~~c~~GhGisIGS~g~~~~~~~V~nV~v~n~~~~~t~-~GirIKT~~~~~gG~v~nI~f~n 293 (394)
T PLN02155 222 IGPGTR-------NFLITKLACGPGHGVSIGSLAKELNEDGVENVTVSSSVFTGSQ-NGVRIKSWARPSTGFVRNVFFQD 293 (394)
T ss_pred cCCCCc-------eEEEEEEEEECCceEEeccccccCCCCcEEEEEEEeeEEeCCC-cEEEEEEecCCCCEEEEEEEEEe
Confidence 765421 57777766643 1222221 11125788888888753 44443 1 11 3577777
Q ss_pred eEEecCCcceee
Q 023514 236 NIYEAGQKKRTF 247 (281)
Q Consensus 236 N~F~~g~~~~~~ 247 (281)
-.+++...+..+
T Consensus 294 i~m~~v~~pI~i 305 (394)
T PLN02155 294 LVMKNVENPIII 305 (394)
T ss_pred EEEcCccccEEE
Confidence 777776666554
No 24
>PLN02793 Probable polygalacturonase
Probab=97.84 E-value=0.001 Score=65.79 Aligned_cols=137 Identities=16% Similarity=0.196 Sum_probs=92.7
Q ss_pred EEEeeeccEEEeeeEEecCCCCCCCcEEEcCCCceEEEeeeeeec-----CCCCeeEeeeCCccEEEeccEEccCCceee
Q 023514 97 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD-----YDDGLIDITRQSTDITVSRCYFTQHDKTML 171 (281)
Q Consensus 97 i~i~~a~NVIIrnL~i~~g~~~~~DaI~i~~~s~nVwIDHcs~s~-----~~Dg~id~~~~s~nVTIS~~~f~~h~k~~l 171 (281)
|.+.+++|+.|++|+++....+. +.+. .+++|.|++.++.. ..|| +|+ ..+++|+|++|.|...+-+..
T Consensus 180 i~f~~~~nv~v~gitl~nSp~~~---i~~~-~~~nv~i~~l~I~~p~~spNTDG-Idi-~~s~nV~I~n~~I~~gDDcIa 253 (443)
T PLN02793 180 ITFHKCKDLRVENLNVIDSQQMH---IAFT-NCRRVTISGLKVIAPATSPNTDG-IHI-SASRGVVIKDSIVRTGDDCIS 253 (443)
T ss_pred EEEEeeccEEEECeEEEcCCCeE---EEEE-ccCcEEEEEEEEECCCCCCCCCc-Eee-eccceEEEEeCEEeCCCCeEE
Confidence 56668999999999999876543 5665 78999999999963 5688 788 568999999999998888887
Q ss_pred ecCCCCCCCCcceEEEEeceeecCCCC-------CCccc-cCCeEEEEcceEeCCcceeEEe--c-----cCceEEEEce
Q 023514 172 IGADPSHVGDRCIRVTIHHCLFDGTRQ-------RHPRL-RFGKVHLYNNYTRNWGIYAVCA--S-----VESQIYSQCN 236 (281)
Q Consensus 172 iG~~~~~~~d~~~~vT~hhN~f~~~~~-------R~Pr~-r~g~~hv~NN~~~n~~~~~i~~--~-----~~a~v~~e~N 236 (281)
+.++. .+|++.++.+..... +.... ..-.+.+.|+.+.+.. +++.. . .-..|.+++-
T Consensus 254 ik~~s-------~nI~I~n~~c~~GhGisIGSlg~~~~~~~V~nV~v~n~~~~~t~-~GirIKt~~g~~G~v~nItf~ni 325 (443)
T PLN02793 254 IVGNS-------SRIKIRNIACGPGHGISIGSLGKSNSWSEVRDITVDGAFLSNTD-NGVRIKTWQGGSGNASKITFQNI 325 (443)
T ss_pred ecCCc-------CCEEEEEeEEeCCccEEEecccCcCCCCcEEEEEEEccEEeCCC-ceEEEEEeCCCCEEEEEEEEEeE
Confidence 75432 267777776632211 11110 0114678888877653 33322 1 1236777777
Q ss_pred EEecCCcceee
Q 023514 237 IYEAGQKKRTF 247 (281)
Q Consensus 237 ~F~~g~~~~~~ 247 (281)
.+++...+..+
T Consensus 326 ~m~nv~~pI~I 336 (443)
T PLN02793 326 FMENVSNPIII 336 (443)
T ss_pred EEecCCceEEE
Confidence 77777666554
No 25
>PLN02197 pectinesterase
Probab=97.78 E-value=0.0041 Score=63.39 Aligned_cols=198 Identities=15% Similarity=0.265 Sum_probs=111.2
Q ss_pred CCCCCCh---hHHHHhhc----CCCeEEEEEeeeEEEecceeEec---CceeEEeeccceEEec--------Cc------
Q 023514 41 LSDDGPG---SLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLTG--------KG------ 96 (281)
Q Consensus 41 l~dsg~G---SLr~al~~----~~pr~Ivf~vsG~I~l~~~l~v~---sn~TI~G~G~g~~I~G--------~g------ 96 (281)
.+.+|.| ++++||++ +..|.||+-..|+++ +.+.|. +|+|+.|.|.+-|+.- .+
T Consensus 279 Va~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~ni~l~G~g~~~TiIt~~~~~~~~~g~~T~~S 356 (588)
T PLN02197 279 VAKDGSGQFKTISQAVMACPDKNPGRCIIHIKAGIYN--EQVTIPKKKNNIFMFGDGARKTVISYNRSVKLSPGTTTSLS 356 (588)
T ss_pred EcCCCCCCcCCHHHHHHhccccCCceEEEEEeCceEE--EEEEccCCCceEEEEEcCCCCeEEEeccccccCCCCcccce
Confidence 4556665 78899976 234666666789984 667774 6899999976554431 11
Q ss_pred --EEEeeeccEEEeeeEEecCCCC-CCCcEEEcCCCceEEEeeeeeecCCCCee-----------------EeeeCCccE
Q 023514 97 --LRLKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGLI-----------------DITRQSTDI 156 (281)
Q Consensus 97 --i~i~~a~NVIIrnL~i~~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dg~i-----------------d~~~~s~nV 156 (281)
+.+ .+++++.|||+|++..+. ..-|+.++-.+.+..+.+|.|.-..|-++ |+--+....
T Consensus 357 aT~~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~a 435 (588)
T PLN02197 357 GTVQV-ESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYRNIVVSGTVDFIFGKSAT 435 (588)
T ss_pred eEEEE-ECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCcceEecCCCEEEEeeEEEecccccccceee
Confidence 344 389999999999986532 22344443357889999999986666554 322233345
Q ss_pred EEeccEEccCC-----ceeeecCCCCCCCCcceEEEEeceeecCCCCCCc------cc------cCCeEEEEcceEeC--
Q 023514 157 TVSRCYFTQHD-----KTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHP------RL------RFGKVHLYNNYTRN-- 217 (281)
Q Consensus 157 TIS~~~f~~h~-----k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~P------r~------r~g~~hv~NN~~~n-- 217 (281)
-+++|.|.... ++.+--.+.....+...-+.||+|.+.....-.| -+ .+.++-+.|.++.+
T Consensus 436 vfq~C~i~~r~~~~~~~~~iTAqgr~~~~~~~tG~vf~~C~it~~~~~~~~~~~~~~yLGRPW~~ysrvV~~~s~~~~~I 515 (588)
T PLN02197 436 VIQNSLIVVRKGSKGQYNTVTADGNEKGLAMKIGIVLQNCRIVPDKKLTAERLTVASYLGRPWKKFSTTVIISTEIGDLI 515 (588)
T ss_pred eeecCEEEEecCCCCCceeEECCCCCCCCCCCcEEEEEccEEecCCcccccccccccccCCCCCCCceEEEEecccCCee
Confidence 66677665321 1111111100001122458899998866432111 11 12456667776643
Q ss_pred ----CcceeEEeccCceEEEEceEEecC
Q 023514 218 ----WGIYAVCASVESQIYSQCNIYEAG 241 (281)
Q Consensus 218 ----~~~~~i~~~~~a~v~~e~N~F~~g 241 (281)
|..+.-......-.+.|-+-+-+|
T Consensus 516 ~p~GW~~W~~~~~~~t~~y~Ey~n~GpG 543 (588)
T PLN02197 516 RPEGWTIWDGEQNHKSCRYVEYNNRGPG 543 (588)
T ss_pred cCcccCCCCCCCCCCceEEEEeccccCC
Confidence 332222222334566665555554
No 26
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=97.73 E-value=0.0006 Score=64.53 Aligned_cols=135 Identities=19% Similarity=0.311 Sum_probs=92.9
Q ss_pred EEEeeeccEEEeeeEEecCCCCCCCcEEEcCCCceEEEeeeeeec-----CCCCeeEeeeCCccEEEeccEEccCCceee
Q 023514 97 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD-----YDDGLIDITRQSTDITVSRCYFTQHDKTML 171 (281)
Q Consensus 97 i~i~~a~NVIIrnL~i~~g~~~~~DaI~i~~~s~nVwIDHcs~s~-----~~Dg~id~~~~s~nVTIS~~~f~~h~k~~l 171 (281)
|.+.+++|+.|++|+++....| .+.+. .+++|+|+|.++.. ..|| +|+ ..+.+|+|.+|.+...+-+.-
T Consensus 95 i~~~~~~~~~i~~i~~~nsp~w---~~~~~-~~~nv~i~~i~I~~~~~~~NtDG-id~-~~s~nv~I~n~~i~~gDD~Ia 168 (326)
T PF00295_consen 95 IRFNNCKNVTIEGITIRNSPFW---HIHIN-DCDNVTISNITINNPANSPNTDG-IDI-DSSKNVTIENCFIDNGDDCIA 168 (326)
T ss_dssp EEEEEEEEEEEESEEEES-SSE---SEEEE-SEEEEEEESEEEEEGGGCTS--S-EEE-ESEEEEEEESEEEESSSESEE
T ss_pred eeeeeecceEEEeeEecCCCee---EEEEE-ccCCeEEcceEEEecCCCCCcce-EEE-EeeeEEEEEEeecccccCccc
Confidence 7888899999999999997665 36776 88999999999963 4688 788 468999999999998877776
Q ss_pred ecCCCCCCCCcceEEEEeceeecCCCCCCcccc---CC-------eEEEEcceEeCCcceeEEe--ccC-----ceEEEE
Q 023514 172 IGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLR---FG-------KVHLYNNYTRNWGIYAVCA--SVE-----SQIYSQ 234 (281)
Q Consensus 172 iG~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~r---~g-------~~hv~NN~~~n~~~~~i~~--~~~-----a~v~~e 234 (281)
+.+... +|++.++++.+... =.+. .+ .+.+.|..+.+.. +++.. ..+ ..|.+|
T Consensus 169 iks~~~-------ni~v~n~~~~~ghG--isiGS~~~~~~~~~i~nV~~~n~~i~~t~-~gi~iKt~~~~~G~v~nI~f~ 238 (326)
T PF00295_consen 169 IKSGSG-------NILVENCTCSGGHG--ISIGSEGSGGSQNDIRNVTFENCTIINTD-NGIRIKTWPGGGGYVSNITFE 238 (326)
T ss_dssp ESSEEC-------EEEEESEEEESSSE--EEEEEESSSSE--EEEEEEEEEEEEESES-EEEEEEEETTTSEEEEEEEEE
T ss_pred cccccc-------ceEEEeEEEecccc--ceeeeccCCccccEEEeEEEEEEEeeccc-eEEEEEEecccceEEeceEEE
Confidence 654421 78888888865433 1111 11 3566666666643 45433 111 367788
Q ss_pred ceEEecCCcceee
Q 023514 235 CNIYEAGQKKRTF 247 (281)
Q Consensus 235 ~N~F~~g~~~~~~ 247 (281)
+...++...+..+
T Consensus 239 ni~~~~v~~pi~i 251 (326)
T PF00295_consen 239 NITMENVKYPIFI 251 (326)
T ss_dssp EEEEEEESEEEEE
T ss_pred EEEecCCceEEEE
Confidence 8888777655443
No 27
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.71 E-value=0.0011 Score=59.13 Aligned_cols=130 Identities=15% Similarity=0.137 Sum_probs=99.5
Q ss_pred CcEEEeeeccEEEeeeEEecCCCCCCCcEEEcCCCceEEEeeeeeecCCCCeeEeeeCCccEEEeccEEccCCceeeecC
Q 023514 95 KGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGA 174 (281)
Q Consensus 95 ~gi~i~~a~NVIIrnL~i~~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~id~~~~s~nVTIS~~~f~~h~k~~liG~ 174 (281)
.++.+..+.++.|++.+|... ..||.+. .++++-|..|.++....|. .+.. +.+.+|++|.|.+...+.++..
T Consensus 36 ~gi~~~~s~~~~I~~n~i~~~----~~GI~~~-~s~~~~i~~n~i~~n~~Gi-~l~~-s~~~~I~~N~i~~n~~GI~l~~ 108 (236)
T PF05048_consen 36 DGIYVENSDNNTISNNTISNN----RYGIHLM-GSSNNTIENNTISNNGYGI-YLMG-SSNNTISNNTISNNGYGIYLYG 108 (236)
T ss_pred CEEEEEEcCCeEEEeeEEECC----CeEEEEE-ccCCCEEEeEEEEccCCCE-EEEc-CCCcEEECCEecCCCceEEEee
Confidence 356777799999999999985 5789887 7788999999999988884 4533 4455999999998877777654
Q ss_pred CCCCCCCcceEEEEeceeecCCCCCCccccC-CeEEEEcceEeCCcceeEE-eccCceEEEEceEEec
Q 023514 175 DPSHVGDRCIRVTIHHCLFDGTRQRHPRLRF-GKVHLYNNYTRNWGIYAVC-ASVESQIYSQCNIYEA 240 (281)
Q Consensus 175 ~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~r~-g~~hv~NN~~~n~~~~~i~-~~~~a~v~~e~N~F~~ 240 (281)
+. ..++.+|.+. ....--.+.. ....+.+|.+.+...+++. ........+.+|+|.+
T Consensus 109 s~--------~~~I~~N~i~-~~~~GI~l~~s~~n~I~~N~i~~n~~~Gi~~~~~s~~n~I~~N~f~N 167 (236)
T PF05048_consen 109 SS--------NNTISNNTIS-NNGYGIYLSSSSNNTITGNTISNNTDYGIYFLSGSSGNTIYNNNFNN 167 (236)
T ss_pred CC--------ceEEECcEEe-CCCEEEEEEeCCCCEEECeEEeCCCccceEEeccCCCCEEECCCccC
Confidence 32 3688889887 4444444433 4678999999888778888 6677788899999943
No 28
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.68 E-value=0.0028 Score=56.57 Aligned_cols=120 Identities=18% Similarity=0.185 Sum_probs=89.2
Q ss_pred CceeEEeeccceEEec--CcEEEeeeccEEEeeeEEecCCCCCCCcEEEcCCCceEEEeeeeeecCCCCeeEeeeCCccE
Q 023514 79 SYKTIDGRGQRIKLTG--KGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDI 156 (281)
Q Consensus 79 sn~TI~G~G~g~~I~G--~gi~i~~a~NVIIrnL~i~~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~id~~~~s~nV 156 (281)
.+.+|.+. ++.+ .||.+..++++.|++-.+.... .||.+. .+.+..|..+.|+....|. .+ ..+++.
T Consensus 44 ~~~~I~~n----~i~~~~~GI~~~~s~~~~i~~n~i~~n~----~Gi~l~-~s~~~~I~~N~i~~n~~GI-~l-~~s~~~ 112 (236)
T PF05048_consen 44 DNNTISNN----TISNNRYGIHLMGSSNNTIENNTISNNG----YGIYLM-GSSNNTISNNTISNNGYGI-YL-YGSSNN 112 (236)
T ss_pred CCeEEEee----EEECCCeEEEEEccCCCEEEeEEEEccC----CCEEEE-cCCCcEEECCEecCCCceE-EE-eeCCce
Confidence 45566554 3433 3688888999999999999853 889997 6666699999999988874 45 357789
Q ss_pred EEeccEEccCCceeeecCCCCCCCCcceEEEEeceeecCCCCCCcc-ccC-CeEEEEcceEeC
Q 023514 157 TVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPR-LRF-GKVHLYNNYTRN 217 (281)
Q Consensus 157 TIS~~~f~~h~k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr-~r~-g~~hv~NN~~~n 217 (281)
+|+.|.|.+...++.+-.+. +.++.+|.|.++..---. +.. ....+++|.|.|
T Consensus 113 ~I~~N~i~~~~~GI~l~~s~--------~n~I~~N~i~~n~~~Gi~~~~~s~~n~I~~N~f~N 167 (236)
T PF05048_consen 113 TISNNTISNNGYGIYLSSSS--------NNTITGNTISNNTDYGIYFLSGSSGNTIYNNNFNN 167 (236)
T ss_pred EEECcEEeCCCEEEEEEeCC--------CCEEECeEEeCCCccceEEeccCCCCEEECCCccC
Confidence 99999999888887775442 578999999988444444 222 357899999944
No 29
>PLN02176 putative pectinesterase
Probab=97.65 E-value=0.0024 Score=60.98 Aligned_cols=103 Identities=12% Similarity=0.237 Sum_probs=69.0
Q ss_pred CCCCCh---hHHHHhhc----CCCeEEEEEeeeEEEecceeEec---CceeEEeeccceEEe--cC--------cEEEee
Q 023514 42 SDDGPG---SLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT--GK--------GLRLKE 101 (281)
Q Consensus 42 ~dsg~G---SLr~al~~----~~pr~Ivf~vsG~I~l~~~l~v~---sn~TI~G~G~g~~I~--G~--------gi~i~~ 101 (281)
+.+|.| ++++||++ +..+++|+-..|+.. +.+.|. +++||.|.|.+-|+. +. .+.+ .
T Consensus 44 a~dGsGdf~TIq~AIdavP~~~~~~~~I~Ik~GvY~--EkV~Ip~~k~~vtl~G~g~~~TiIt~~~~~~t~~saT~~v-~ 120 (340)
T PLN02176 44 NPNDARYFKTVQSAIDSIPLQNQNWIRILIQNGIYR--EKVTIPKEKGYIYMQGKGIEKTIIAYGDHQATDTSATFTS-Y 120 (340)
T ss_pred CCCCCCCccCHHHHHhhchhcCCceEEEEECCcEEE--EEEEECCCCccEEEEEcCCCceEEEEeCCcccccceEEEE-E
Confidence 445555 78999965 223555665689994 667773 689999998655544 11 2555 4
Q ss_pred eccEEEeeeEEecCCC-------CCCCcEEEcCCCceEEEeeeeeecCCCCee
Q 023514 102 CEHVIICNLEFEGGRG-------HDVDGIQIKPNSRHIWIDRCSLRDYDDGLI 147 (281)
Q Consensus 102 a~NVIIrnL~i~~g~~-------~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~i 147 (281)
+++++.+||+|++... ...-|+.+.-.+.++-+.+|.|.-..|-++
T Consensus 121 a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy 173 (340)
T PLN02176 121 ASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGFQDTLF 173 (340)
T ss_pred CCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEecccceeE
Confidence 8999999999997642 112344343346789999999976655554
No 30
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=97.61 E-value=0.0044 Score=60.60 Aligned_cols=137 Identities=12% Similarity=0.128 Sum_probs=94.2
Q ss_pred EEEeeeccEEEeeeEEecCCCCCCCcEEEcCCCceEEEeeeeeec-----CCCCeeEeeeCCccEEEeccEEccCCceee
Q 023514 97 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD-----YDDGLIDITRQSTDITVSRCYFTQHDKTML 171 (281)
Q Consensus 97 i~i~~a~NVIIrnL~i~~g~~~~~DaI~i~~~s~nVwIDHcs~s~-----~~Dg~id~~~~s~nVTIS~~~f~~h~k~~l 171 (281)
|.+..++||.|++|+++....| .+.+. .+++|.|++.++.. ..|| +|+ ..+++|+|.+|.|..-+-+.-
T Consensus 158 i~f~~~~nv~i~gitl~nSp~w---~i~~~-~~~~v~i~~v~I~~~~~spNtDG-idi-~~s~nV~I~n~~I~~GDDcIa 231 (404)
T PLN02188 158 VKFVNMNNTVVRGITSVNSKFF---HIALV-ECRNFKGSGLKISAPSDSPNTDG-IHI-ERSSGVYISDSRIGTGDDCIS 231 (404)
T ss_pred EEEEeeeeEEEeCeEEEcCCCe---EEEEE-ccccEEEEEEEEeCCCCCCCCCc-Eee-eCcccEEEEeeEEeCCCcEEE
Confidence 4566789999999999997654 36665 78999999999874 5688 788 568999999999998888888
Q ss_pred ecCCCCCCCCcceEEEEeceeecCCCC-------CCccc-cCCeEEEEcceEeCCcceeEEe-------c--cCceEEEE
Q 023514 172 IGADPSHVGDRCIRVTIHHCLFDGTRQ-------RHPRL-RFGKVHLYNNYTRNWGIYAVCA-------S--VESQIYSQ 234 (281)
Q Consensus 172 iG~~~~~~~d~~~~vT~hhN~f~~~~~-------R~Pr~-r~g~~hv~NN~~~n~~~~~i~~-------~--~~a~v~~e 234 (281)
+.++.. +|++-++...+... +.+.. ....+.+.|+.+.+.. +++.. + .-..|.+|
T Consensus 232 iksg~~-------nI~I~n~~c~~ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t~-~GiriKt~~g~~~~G~v~nI~f~ 303 (404)
T PLN02188 232 IGQGNS-------QVTITRIRCGPGHGISVGSLGRYPNEGDVTGLVVRDCTFTGTT-NGIRIKTWANSPGKSAATNMTFE 303 (404)
T ss_pred EccCCc-------cEEEEEEEEcCCCcEEeCCCCCCCcCCcEEEEEEEeeEEECCC-cEEEEEEecCCCCceEEEEEEEE
Confidence 854321 57776665532111 10100 0125678888888754 34433 1 11368888
Q ss_pred ceEEecCCcceee
Q 023514 235 CNIYEAGQKKRTF 247 (281)
Q Consensus 235 ~N~F~~g~~~~~~ 247 (281)
+-.+++...+.++
T Consensus 304 ni~m~~v~~pI~i 316 (404)
T PLN02188 304 NIVMNNVTNPIII 316 (404)
T ss_pred eEEecCccceEEE
Confidence 8888887766554
No 31
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=97.55 E-value=0.0077 Score=55.13 Aligned_cols=185 Identities=17% Similarity=0.203 Sum_probs=109.2
Q ss_pred hhHHHHhhcCCCeEEEEEeeeEEEecc----eeEecCceeEEee----cc----------ceEEecCc-------EEEee
Q 023514 47 GSLREGCRRREPLWIVFEVSGTIHLSS----YLSVSSYKTIDGR----GQ----------RIKLTGKG-------LRLKE 101 (281)
Q Consensus 47 GSLr~al~~~~pr~Ivf~vsG~I~l~~----~l~v~sn~TI~G~----G~----------g~~I~G~g-------i~i~~ 101 (281)
-+|.+|++...|..+|.--.|++.-.. ||.+++.+||.|. |. +..|.|.+ +.|..
T Consensus 16 ~Ti~~A~~~a~~g~~i~l~~GtY~~~~ge~fPi~i~~gVtl~G~~~~kG~~~il~~g~~~~~~I~g~~~~~~~qn~tI~~ 95 (246)
T PF07602_consen 16 KTITKALQAAQPGDTIQLAPGTYSEATGETFPIIIKPGVTLIGNESNKGQIDILITGGGTGPTISGGGPDLSGQNVTIIL 95 (246)
T ss_pred HHHHHHHHhCCCCCEEEECCceeccccCCcccEEecCCeEEeecccCCCcceEEecCCceEEeEeccCccccceeEEEEe
Confidence 357899988888777766789986542 6888888999885 22 22334433 44455
Q ss_pred eccEEEeeeEEecCCCCCCCcEEEcCCCceEEEeeeeeecC-CCCeeEee-----eCCccEEEeccEEccCCceeeecCC
Q 023514 102 CEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDY-DDGLIDIT-----RQSTDITVSRCYFTQHDKTMLIGAD 175 (281)
Q Consensus 102 a~NVIIrnL~i~~g~~~~~DaI~i~~~s~nVwIDHcs~s~~-~Dg~id~~-----~~s~nVTIS~~~f~~h~k~~liG~~ 175 (281)
+++..|+.++|+......+-||.++ .+ +.-|.+|+|... .+|. .+. ....+.+|+.|.+.....+.-+-..
T Consensus 96 ~~~~~i~GvtItN~n~~~g~Gi~Ie-ss-~~tI~Nntf~~~~~~GI-~v~g~~~~~~i~~~vI~GN~~~~~~~Gi~i~~~ 172 (246)
T PF07602_consen 96 ANNATISGVTITNPNIARGTGIWIE-SS-SPTIANNTFTNNGREGI-FVTGTSANPGINGNVISGNSIYFNKTGISISDN 172 (246)
T ss_pred cCCCEEEEEEEEcCCCCcceEEEEe-cC-CcEEEeeEEECCccccE-EEEeeecCCcccceEeecceEEecCcCeEEEcc
Confidence 7888899999998754456788886 44 788899999985 5563 331 1234667777766654443333211
Q ss_pred CCCCCCcceEEEEeceeecCCCC------CCccccCC-eEEEEcceEeCCcceeEEec--cCceEEEEceEEe
Q 023514 176 PSHVGDRCIRVTIHHCLFDGTRQ------RHPRLRFG-KVHLYNNYTRNWGIYAVCAS--VESQIYSQCNIYE 239 (281)
Q Consensus 176 ~~~~~d~~~~vT~hhN~f~~~~~------R~Pr~r~g-~~hv~NN~~~n~~~~~i~~~--~~a~v~~e~N~F~ 239 (281)
... ....+-+|++.++.. ..|-+..+ ....-||.+.+.+.|.+... .+-++++.+|-..
T Consensus 173 ~~~-----~~n~I~NN~I~~N~~Gi~~~~~~pDlG~~s~~~~g~N~~~~N~~~Dl~~~~~~~~~l~a~gN~ld 240 (246)
T PF07602_consen 173 AAP-----VENKIENNIIENNNIGIVAIGDAPDLGTGSEGSPGNNIFRNNGRYDLNNSATPGQTLYAVGNQLD 240 (246)
T ss_pred cCC-----ccceeeccEEEeCCcCeEeeccCCccccCCCCCCCCcEEecCcceeeEeccCCceeEEEeCCccC
Confidence 110 011234455554322 11333321 22356677777666666552 2235666666554
No 32
>PLN02432 putative pectinesterase
Probab=97.43 E-value=0.0062 Score=57.13 Aligned_cols=98 Identities=13% Similarity=0.244 Sum_probs=67.2
Q ss_pred hhHHHHhhcC----CCeEEEEEeeeEEEecceeEe---cCceeEEeeccceEEe----c------CcEEEeeeccEEEee
Q 023514 47 GSLREGCRRR----EPLWIVFEVSGTIHLSSYLSV---SSYKTIDGRGQRIKLT----G------KGLRLKECEHVIICN 109 (281)
Q Consensus 47 GSLr~al~~~----~pr~Ivf~vsG~I~l~~~l~v---~sn~TI~G~G~g~~I~----G------~gi~i~~a~NVIIrn 109 (281)
-++++||++- ..+++|+-..|+. .+.+.| .+++||.|.+..-++. + ..+.+. ++|++.+|
T Consensus 24 ~TIq~Aida~p~~~~~~~~I~I~~G~Y--~E~V~ip~~k~~itl~G~~~~~TvI~~~~~~~~~~saT~~v~-a~~f~a~n 100 (293)
T PLN02432 24 RKIQDAIDAVPSNNSQLVFIWVKPGIY--REKVVVPADKPFITLSGTQASNTIITWNDGGDIFESPTLSVL-ASDFVGRF 100 (293)
T ss_pred cCHHHHHhhccccCCceEEEEEeCcee--EEEEEEeccCceEEEEEcCCCCeEEEecCCcccccceEEEEE-CCCeEEEe
Confidence 4688899652 2345555578988 466777 3789999997654443 1 124454 89999999
Q ss_pred eEEecCCCCCCCcEEEcCCCceEEEeeeeeecCCCCee
Q 023514 110 LEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLI 147 (281)
Q Consensus 110 L~i~~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~i 147 (281)
|+|++..+...-|+.+.-.+.++.+.+|.|.-..|-++
T Consensus 101 lt~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy 138 (293)
T PLN02432 101 LTIQNTFGSSGKAVALRVAGDRAAFYGCRILSYQDTLL 138 (293)
T ss_pred eEEEeCCCCCCceEEEEEcCCcEEEEcceEecccceeE
Confidence 99998754333444443356889999999987666654
No 33
>PLN02304 probable pectinesterase
Probab=97.41 E-value=0.054 Score=52.52 Aligned_cols=104 Identities=14% Similarity=0.178 Sum_probs=69.6
Q ss_pred CCCCCh---hHHHHhhcC----CCeEEEEEeeeEEEecceeEe---cCceeEEeeccceEEec--------------CcE
Q 023514 42 SDDGPG---SLREGCRRR----EPLWIVFEVSGTIHLSSYLSV---SSYKTIDGRGQRIKLTG--------------KGL 97 (281)
Q Consensus 42 ~dsg~G---SLr~al~~~----~pr~Ivf~vsG~I~l~~~l~v---~sn~TI~G~G~g~~I~G--------------~gi 97 (281)
+.+|.| ++++||++- ..|++|+=..|+.. +.+.| ++++||.|+|.+-++.- ..+
T Consensus 80 a~dGsGdf~TIQ~AIdavP~~~~~r~vI~Ik~GvY~--EkV~Ip~~K~~Itl~G~g~~~TiIt~~~~a~~~~gT~~SaTv 157 (379)
T PLN02304 80 DPNGCCNFTTVQSAVDAVGNFSQKRNVIWINSGIYY--EKVTVPKTKPNITFQGQGFDSTAIAWNDTAKSANGTFYSASV 157 (379)
T ss_pred CCCCCCCccCHHHHHhhCcccCCCcEEEEEeCeEeE--EEEEECCCCCcEEEEecCCCCcEEEccCcccCCCCccceEEE
Confidence 345554 899999762 33666666789884 66777 47899999976544431 113
Q ss_pred EEeeeccEEEeeeEEecCCCC------CCCcEEEcCCCceEEEeeeeeecCCCCeeE
Q 023514 98 RLKECEHVIICNLEFEGGRGH------DVDGIQIKPNSRHIWIDRCSLRDYDDGLID 148 (281)
Q Consensus 98 ~i~~a~NVIIrnL~i~~g~~~------~~DaI~i~~~s~nVwIDHcs~s~~~Dg~id 148 (281)
.+. +++++.|||+|++.... ..-|+.+.-.+.++-+.+|.|.-..|-+++
T Consensus 158 ~v~-a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~ 213 (379)
T PLN02304 158 QVF-ASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHD 213 (379)
T ss_pred EEE-CCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEecccceeEe
Confidence 443 89999999999986421 122444433467899999999877776653
No 34
>PLN02497 probable pectinesterase
Probab=97.36 E-value=0.043 Score=52.36 Aligned_cols=97 Identities=9% Similarity=0.194 Sum_probs=65.4
Q ss_pred hHHHHhhc----CCCeEEEEEeeeEEEecceeEe---cCceeEEeeccceEEec----------CcEEEeeeccEEEeee
Q 023514 48 SLREGCRR----REPLWIVFEVSGTIHLSSYLSV---SSYKTIDGRGQRIKLTG----------KGLRLKECEHVIICNL 110 (281)
Q Consensus 48 SLr~al~~----~~pr~Ivf~vsG~I~l~~~l~v---~sn~TI~G~G~g~~I~G----------~gi~i~~a~NVIIrnL 110 (281)
++++||++ +..|++|+-..|+. ++.+.| ++++||.|+|..-++.- ..+.+ .+++++.+||
T Consensus 46 TIq~AIdavP~~~~~~~~I~Ik~G~Y--~EkV~Ip~~k~~itl~G~g~~~tiIt~~~~~~t~~SaT~~v-~a~~f~a~nl 122 (331)
T PLN02497 46 TIQSAIDSVPSNNKHWFCINVKAGLY--REKVKIPYDKPFIVLVGAGKRRTRIEWDDHDSTAQSPTFST-LADNTVVKSI 122 (331)
T ss_pred CHHHHHhhccccCCceEEEEEeCcEE--EEEEEecCCCCcEEEEecCCCCceEEEeccccccCceEEEE-ecCCeEEEcc
Confidence 78899965 23455555578988 466777 37899999976433321 12455 4899999999
Q ss_pred EEecCCCC--------CCCcEEEcCCCceEEEeeeeeecCCCCee
Q 023514 111 EFEGGRGH--------DVDGIQIKPNSRHIWIDRCSLRDYDDGLI 147 (281)
Q Consensus 111 ~i~~g~~~--------~~DaI~i~~~s~nVwIDHcs~s~~~Dg~i 147 (281)
+|++.... ..-|+.+.-.+.++-+.+|.|.-..|-++
T Consensus 123 T~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy 167 (331)
T PLN02497 123 TFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLW 167 (331)
T ss_pred EEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEecccccee
Confidence 99986421 11244443356789999999987666654
No 35
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=97.35 E-value=0.0041 Score=61.20 Aligned_cols=165 Identities=17% Similarity=0.193 Sum_probs=92.4
Q ss_pred CceeEEee-----ccceEEecCcEEEeeeccEEEeeeEEecCCC-------------------CCCCcEEEcCCCceEEE
Q 023514 79 SYKTIDGR-----GQRIKLTGKGLRLKECEHVIICNLEFEGGRG-------------------HDVDGIQIKPNSRHIWI 134 (281)
Q Consensus 79 sn~TI~G~-----G~g~~I~G~gi~i~~a~NVIIrnL~i~~g~~-------------------~~~DaI~i~~~s~nVwI 134 (281)
+++||.|. |....-...+|.+++++++.|++.++++... ....+|.+. .++++.|
T Consensus 115 ~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~I~g~~~~~I~lw-~S~g~~V 193 (455)
T TIGR03808 115 DGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSGGNGIWLETVSGDISGNTITQIAVTAIVSF-DALGLIV 193 (455)
T ss_pred CCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCCcceEEEEcCcceEecceEeccccceEEEe-ccCCCEE
Confidence 55555554 4332223345777889999999999987621 012234444 5568888
Q ss_pred eeeeeecCCCCeeEeee-----------------------------------CCccEEEeccEEccCCceeeecCCCCCC
Q 023514 135 DRCSLRDYDDGLIDITR-----------------------------------QSTDITVSRCYFTQHDKTMLIGADPSHV 179 (281)
Q Consensus 135 DHcs~s~~~Dg~id~~~-----------------------------------~s~nVTIS~~~f~~h~k~~liG~~~~~~ 179 (281)
.+++++...|+.+-+.+ .+.+++|+.|.++++.+....+.+.++.
T Consensus 194 ~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~nsss~~ 273 (455)
T TIGR03808 194 ARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCDYSAVRGNSASNI 273 (455)
T ss_pred ECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccccceEEEEcccCc
Confidence 88888877774433321 2467888888888777433333222221
Q ss_pred -------CC-c--ceEEEE-ec-eeecCCCCCCccccC--------Ce-EEEEcceEeCCc-----------ceeEEecc
Q 023514 180 -------GD-R--CIRVTI-HH-CLFDGTRQRHPRLRF--------GK-VHLYNNYTRNWG-----------IYAVCASV 227 (281)
Q Consensus 180 -------~d-~--~~~vT~-hh-N~f~~~~~R~Pr~r~--------g~-~hv~NN~~~n~~-----------~~~i~~~~ 227 (281)
.+ + .++.-| |+ +.+.+|....-.... |+ ..+-.|++.|.. ..+++...
T Consensus 274 ~i~~N~~~~~R~~alhymfs~~g~~i~~N~~~g~~~G~av~nf~~ggr~~~~~gn~irn~~~~~p~~~~~~~~~g~gi~~ 353 (455)
T TIGR03808 274 QITGNSVSDVREVALYSEFAFEGAVIANNTVDGAAVGVSVCNFNEGGRLAVVQGNIIRNLIPKRPIGTAPDDDAGIGIYV 353 (455)
T ss_pred EEECcEeeeeeeeEEEEEEeCCCcEEeccEEecCcceEEEEeecCCceEEEEecceeeccccCCCCCCCCCCCCceeEEE
Confidence 01 1 112222 22 455554444433321 33 345667666631 24666667
Q ss_pred CceEEEEceEEecCCcc
Q 023514 228 ESQIYSQCNIYEAGQKK 244 (281)
Q Consensus 228 ~a~v~~e~N~F~~g~~~ 244 (281)
+|.-.+-+|+-|+.|.-
T Consensus 354 ead~~~~~n~~e~ap~~ 370 (455)
T TIGR03808 354 EADTAVTGNVVENAPSF 370 (455)
T ss_pred EecceeccceecCCcce
Confidence 77777778888877664
No 36
>PLN02773 pectinesterase
Probab=97.32 E-value=0.05 Score=51.62 Aligned_cols=98 Identities=14% Similarity=0.199 Sum_probs=64.0
Q ss_pred hhHHHHhhcC----CCeEEEEEeeeEEEecceeEec---CceeEEeeccceEEec-C-----------------------
Q 023514 47 GSLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLTG-K----------------------- 95 (281)
Q Consensus 47 GSLr~al~~~----~pr~Ivf~vsG~I~l~~~l~v~---sn~TI~G~G~g~~I~G-~----------------------- 95 (281)
-++++||+.- ..+++|+-..|+.. +.|.|. +++||.|++..-++.- .
T Consensus 18 ~TIq~Aida~P~~~~~~~~I~Ik~G~Y~--E~V~I~~~k~~itl~G~~~~~TiI~~~~~a~~~~~~~~~~~~g~gT~~Sa 95 (317)
T PLN02773 18 CTVQDAIDAVPLCNRCRTVIRVAPGVYR--QPVYVPKTKNLITLAGLSPEATVLTWNNTATKIDHHQASRVIGTGTFGCG 95 (317)
T ss_pred cCHHHHHhhchhcCCceEEEEEeCceEE--EEEEECcCCccEEEEeCCCCceEEEccCccccccccccccccCcCccCce
Confidence 4688998652 23555665679884 667773 5799999876444331 0
Q ss_pred cEEEeeeccEEEeeeEEecCCCC-CCCcEEEcCCCceEEEeeeeeecCCCCee
Q 023514 96 GLRLKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGLI 147 (281)
Q Consensus 96 gi~i~~a~NVIIrnL~i~~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dg~i 147 (281)
.+.+ .++|++.+||+|++.... ..-|+.+.-.+.++-+.+|.|.-..|-++
T Consensus 96 Tv~v-~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~ 147 (317)
T PLN02773 96 TVIV-EGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLY 147 (317)
T ss_pred EEEE-ECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccceeE
Confidence 1334 489999999999986431 22333333346789999999976655554
No 37
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=97.31 E-value=0.025 Score=57.37 Aligned_cols=194 Identities=16% Similarity=0.385 Sum_probs=112.8
Q ss_pred CCCCCh---hHHHHhhc----CCCeEEEEEeeeEEEecceeEec---CceeEEeeccceEEe-cC-----c--------E
Q 023514 42 SDDGPG---SLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-GK-----G--------L 97 (281)
Q Consensus 42 ~dsg~G---SLr~al~~----~~pr~Ivf~vsG~I~l~~~l~v~---sn~TI~G~G~g~~I~-G~-----g--------i 97 (281)
+.+|.| ++++||++ +..|+||+-..|+.+ +.+.|. +|+||.|.|.+-+|. +. + +
T Consensus 235 a~dGsG~f~TIq~Ai~a~p~~~~~r~vI~Ik~GvY~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~ 312 (541)
T PLN02416 235 AADGTGNFSTITDAINFAPNNSNDRIIIYVREGVYE--ENVEIPIYKTNIVLIGDGSDVTFITGNRSVVDGWTTFRSATL 312 (541)
T ss_pred CCCCCCCccCHHHHHHhhhhcCCceEEEEEeCceeE--EEEecCCCCccEEEEecCCCceEEeCCCccCCCCCccceEEE
Confidence 345655 78889965 345777777789984 667773 689999998655443 21 1 4
Q ss_pred EEeeeccEEEeeeEEecCCC---CCCCcEEEcCCCceEEEeeeeeecCCCCe-----------------eEeeeCCccEE
Q 023514 98 RLKECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGL-----------------IDITRQSTDIT 157 (281)
Q Consensus 98 ~i~~a~NVIIrnL~i~~g~~---~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~-----------------id~~~~s~nVT 157 (281)
.+. +++++.|||+|++..+ ...-|+.+ .+.++-+-+|.|.-..|-+ +|+--+....-
T Consensus 313 ~v~-~~~F~a~nitf~Ntag~~~~QAVAl~v--~~D~~~fy~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~av 389 (541)
T PLN02416 313 AVS-GEGFLARDITIENTAGPEKHQAVALRV--NADLVALYRCTINGYQDTLYVHSFRQFYRECDIYGTIDYIFGNAAVV 389 (541)
T ss_pred EEE-CCCeEEEeeEEEECCCCCCCceEEEEE--cCccEEEEcceEecccchhccCCCceEEEeeEEeeccceeeccceEE
Confidence 444 8999999999998653 23345555 4678999999997554443 34333445566
Q ss_pred EeccEEccCCc-----eeeecCCCCCCCCcceEEEEeceeecCCCC----CCc--------cccCCeEEEEcceEeC---
Q 023514 158 VSRCYFTQHDK-----TMLIGADPSHVGDRCIRVTIHHCLFDGTRQ----RHP--------RLRFGKVHLYNNYTRN--- 217 (281)
Q Consensus 158 IS~~~f~~h~k-----~~liG~~~~~~~d~~~~vT~hhN~f~~~~~----R~P--------r~r~g~~hv~NN~~~n--- 217 (281)
+++|.|..... +.+--.+.. ..+...-..||+|.+..... +.+ --.+.++-+.|.++.+
T Consensus 390 fq~c~i~~~~~~~~~~~~iTA~~r~-~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~~sr~v~~~s~i~~~I~ 468 (541)
T PLN02416 390 FQACNIVSKMPMPGQFTVITAQSRD-TPDEDTGISIQNCSILATEDLYSNSNSVKSYLGRPWRVYSRTVVLESYIDDFID 468 (541)
T ss_pred EeccEEEEecCCCCCceEEECCCCC-CCCCCCEEEEEeeEEecCCccccccccccccccCCCCCCccEEEEecccCCeec
Confidence 77787764321 111111100 01122357889998854322 111 1123466777777654
Q ss_pred ---CcceeEEeccCceEEEEceEEecC
Q 023514 218 ---WGIYAVCASVESQIYSQCNIYEAG 241 (281)
Q Consensus 218 ---~~~~~i~~~~~a~v~~e~N~F~~g 241 (281)
|..+.-........+.|-+-.-+|
T Consensus 469 p~GW~~w~~~~~~~t~~yaEy~n~GpG 495 (541)
T PLN02416 469 PSGWSKWNGNEGLDTLYYGEYDNNGPG 495 (541)
T ss_pred ccccCcCCCCCCCCceEEEEecccCCC
Confidence 433322223344456676555554
No 38
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=97.26 E-value=0.0088 Score=60.39 Aligned_cols=115 Identities=21% Similarity=0.494 Sum_probs=77.7
Q ss_pred CceeEEeeccceEEecC---cEEEeeeccEEEeeeEEecCCCCCCCcEEEcCCCceEEEeeeeeecCCCCeeEee-----
Q 023514 79 SYKTIDGRGQRIKLTGK---GLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDIT----- 150 (281)
Q Consensus 79 sn~TI~G~G~g~~I~G~---gi~i~~a~NVIIrnL~i~~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~id~~----- 150 (281)
.|+++.|. +|... ++....++|+.++||+|..-.....|||.++ .++||.|+.|.|+.+.|- +-++
T Consensus 247 ~NV~~~g~----~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~-sc~NvlI~~~~fdtgDD~-I~iksg~~~ 320 (542)
T COG5434 247 RNVLLEGL----NIKNSPLWTVHPVDCDNLTFRNLTIDANRFDNTDGFDPG-SCSNVLIEGCRFDTGDDC-IAIKSGAGL 320 (542)
T ss_pred ceEEEeee----EecCCCcEEEeeecccCceecceEEECCCCCCCCccccc-cceeEEEeccEEecCCce-EEeecccCC
Confidence 45666554 33332 3555679999999999997654478999997 999999999999987665 3332
Q ss_pred ------eCCccEEEeccEEccCCceeeecCCCCCCCCcceEEEEeceeecCCCCCCccc
Q 023514 151 ------RQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRL 203 (281)
Q Consensus 151 ------~~s~nVTIS~~~f~~h~k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~ 203 (281)
..+.+++|++|+|..-.-+..+|+.-. .+-.+|++-.|.|.+ ..|-=|+
T Consensus 321 ~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~---ggv~ni~ved~~~~~-~d~GLRi 375 (542)
T COG5434 321 DGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMG---GGVQNITVEDCVMDN-TDRGLRI 375 (542)
T ss_pred cccccccccccEEEecceecccccceEeeeecC---CceeEEEEEeeeecc-Ccceeee
Confidence 124679999999985444444555421 112367777777766 4444444
No 39
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=97.26 E-value=0.039 Score=51.84 Aligned_cols=109 Identities=17% Similarity=0.352 Sum_probs=64.0
Q ss_pred hHHHHhhc----CCCeEEEEEeeeEEEecceeEec---CceeEEeeccceE-EecC-------------cEEEeeeccEE
Q 023514 48 SLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIK-LTGK-------------GLRLKECEHVI 106 (281)
Q Consensus 48 SLr~al~~----~~pr~Ivf~vsG~I~l~~~l~v~---sn~TI~G~G~g~~-I~G~-------------gi~i~~a~NVI 106 (281)
++++||+. +..+++|+-..|+.+ +.+.|. +++||.|.+..-+ |.+. .+.+. +++++
T Consensus 14 TIq~Aida~p~~~~~~~~I~I~~G~Y~--E~V~i~~~k~~v~l~G~~~~~tiI~~~~~~~~~~~t~~saT~~v~-a~~f~ 90 (298)
T PF01095_consen 14 TIQAAIDAAPDNNTSRYTIFIKPGTYR--EKVTIPRSKPNVTLIGEGRDKTIITGNDNAADGGGTFRSATFSVN-ADDFT 90 (298)
T ss_dssp SHHHHHHHS-SSSSS-EEEEE-SEEEE----EEE-STSTTEEEEES-TTTEEEEE---TTTB-HCGGC-SEEE--STT-E
T ss_pred CHHHHHHhchhcCCceEEEEEeCeeEc--cccEeccccceEEEEecCCCceEEEEecccccccccccccccccc-cccee
Confidence 58888875 234566666789995 667775 5899999976444 3331 15554 89999
Q ss_pred EeeeEEecCCC---CCCCcEEEcCCCceEEEeeeeeecCCCCeeEeeeCCccEEEeccEEc
Q 023514 107 ICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFT 164 (281)
Q Consensus 107 IrnL~i~~g~~---~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~id~~~~s~nVTIS~~~f~ 164 (281)
++||+|++..+ ...-|+.+. +.++.+.+|.|.-..|-++.- ....-+.+|++.
T Consensus 91 ~~nit~~Nt~g~~~~qAvAl~~~--~d~~~f~~c~~~g~QDTL~~~---~~r~y~~~c~Ie 146 (298)
T PF01095_consen 91 AENITFENTAGPSGGQAVALRVS--GDRAAFYNCRFLGYQDTLYAN---GGRQYFKNCYIE 146 (298)
T ss_dssp EEEEEEEEHCSGSG----SEEET---TSEEEEEEEEE-STT-EEE----SSEEEEES-EEE
T ss_pred eeeeEEecCCCCcccceeeeeec--CCcEEEEEeEEccccceeeec---cceeEEEeeEEE
Confidence 99999997542 234566664 578999999998877776533 223444566555
No 40
>PLN02682 pectinesterase family protein
Probab=97.22 E-value=0.08 Score=51.24 Aligned_cols=98 Identities=13% Similarity=0.227 Sum_probs=64.8
Q ss_pred hHHHHhhcC----CCeEEEEEeeeEEEecceeEe---cCceeEEeeccceEEec------------C--------cEEEe
Q 023514 48 SLREGCRRR----EPLWIVFEVSGTIHLSSYLSV---SSYKTIDGRGQRIKLTG------------K--------GLRLK 100 (281)
Q Consensus 48 SLr~al~~~----~pr~Ivf~vsG~I~l~~~l~v---~sn~TI~G~G~g~~I~G------------~--------gi~i~ 100 (281)
++++||++- ..|++|+=..|+. .+.+.| .+++||.|.|.+-++.- . .+.+
T Consensus 84 TIQ~AIdavP~~~~~r~vI~Ik~G~Y--~EkV~Ip~~k~~Itl~G~g~~~TiIt~~~~a~~~~~~g~~~gT~~SAT~~v- 160 (369)
T PLN02682 84 TIQAAIDSLPVINLVRVVIKVNAGTY--REKVNIPPLKAYITLEGAGADKTIIQWGDTADTPGPGGRPLGTYGSATFAV- 160 (369)
T ss_pred CHHHHHhhccccCCceEEEEEeCcee--eEEEEEeccCceEEEEecCCCccEEEeccccCccCCCCCccccccceEEEE-
Confidence 788999762 2355555567988 466777 47899999976444431 0 1444
Q ss_pred eeccEEEeeeEEecCCCC------CCCcEEEcCCCceEEEeeeeeecCCCCeeE
Q 023514 101 ECEHVIICNLEFEGGRGH------DVDGIQIKPNSRHIWIDRCSLRDYDDGLID 148 (281)
Q Consensus 101 ~a~NVIIrnL~i~~g~~~------~~DaI~i~~~s~nVwIDHcs~s~~~Dg~id 148 (281)
.+++++.+||+|++.... ..-|+.+.-.+.++.+.+|.|.-..|-+++
T Consensus 161 ~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~ 214 (369)
T PLN02682 161 NSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQDTLYD 214 (369)
T ss_pred ECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEeccccceEE
Confidence 488999999999986421 112333333468899999999876666543
No 41
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=97.22 E-value=0.021 Score=54.41 Aligned_cols=134 Identities=20% Similarity=0.245 Sum_probs=90.2
Q ss_pred eeeEEEecceeEecCceeEEeeccceEEecCc----EEEeeeccEEEeeeEEecCCC---CCCCcEEEcCCCceEEEeee
Q 023514 65 VSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKG----LRLKECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRC 137 (281)
Q Consensus 65 vsG~I~l~~~l~v~sn~TI~G~G~g~~I~G~g----i~i~~a~NVIIrnL~i~~g~~---~~~DaI~i~~~s~nVwIDHc 137 (281)
.+|.. ...+.|+.-+|+.|. +++++.|.+ +++. +.++|||.|++++... .-.-+|-+...++...|.||
T Consensus 39 i~g~~--~g~~vInr~l~l~ge-~ga~l~g~g~G~~vtv~-aP~~~v~Gl~vr~sg~~lp~m~agI~v~~~at~A~Vr~N 114 (408)
T COG3420 39 ISGRY--AGNFVINRALTLRGE-NGAVLDGGGKGSYVTVA-APDVIVEGLTVRGSGRSLPAMDAGIFVGRTATGAVVRHN 114 (408)
T ss_pred Eeeee--cccEEEccceeeccc-cccEEecCCcccEEEEe-CCCceeeeEEEecCCCCcccccceEEeccCcccceEEcc
Confidence 34666 467888888999887 466787654 6675 9999999999997542 22456777667888999999
Q ss_pred eeecCCCCeeEeeeCCccEEEeccEEccCC---------ceeeecCCC--------CCCCCcceEEEEeceeecCCCCCC
Q 023514 138 SLRDYDDGLIDITRQSTDITVSRCYFTQHD---------KTMLIGADP--------SHVGDRCIRVTIHHCLFDGTRQRH 200 (281)
Q Consensus 138 s~s~~~Dg~id~~~~s~nVTIS~~~f~~h~---------k~~liG~~~--------~~~~d~~~~vT~hhN~f~~~~~R~ 200 (281)
++....-|.+ + .++..+-|--|.+..-. -..++..++ ++..|+-..=|-|||.|.++..|.
T Consensus 115 ~l~~n~~Gi~-l-~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~S~~~~~~gnr~~~ 192 (408)
T COG3420 115 DLIGNSFGIY-L-HGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDISYGRDGIYSDTSQHNVFKGNRFRD 192 (408)
T ss_pred cccccceEEE-E-eccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCccccccceEEEcccccceecccchhh
Confidence 9998888854 3 35677777777665310 122333332 233344334455788888888777
Q ss_pred cccc
Q 023514 201 PRLR 204 (281)
Q Consensus 201 Pr~r 204 (281)
-|+.
T Consensus 193 ~Ryg 196 (408)
T COG3420 193 LRYG 196 (408)
T ss_pred eeee
Confidence 6665
No 42
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=97.14 E-value=0.056 Score=54.55 Aligned_cols=192 Identities=17% Similarity=0.391 Sum_probs=111.6
Q ss_pred CCCCCh---hHHHHhhcC-----CCeEEEEEeeeEEEecceeEe---cCceeEEeeccceEEe-c-----Cc--------
Q 023514 42 SDDGPG---SLREGCRRR-----EPLWIVFEVSGTIHLSSYLSV---SSYKTIDGRGQRIKLT-G-----KG-------- 96 (281)
Q Consensus 42 ~dsg~G---SLr~al~~~-----~pr~Ivf~vsG~I~l~~~l~v---~sn~TI~G~G~g~~I~-G-----~g-------- 96 (281)
+.+|.| ++++||++. ..|++|+-..|+++ +.+.| .+|+||.|.|.+-||. + .+
T Consensus 230 a~dGsG~f~TIq~AI~a~~~~~~~~r~vI~Ik~GvY~--E~V~I~~~k~nItl~G~g~~~TiIt~~~~~~~g~~T~~SaT 307 (529)
T PLN02170 230 AADGSGTHKTIGEALLSTSLESGGGRTVIYLKAGTYH--ENLNIPTKQKNVMLVGDGKGKTVIVGSRSNRGGWTTYQTAT 307 (529)
T ss_pred cCCCCCchhhHHHHHHhcccccCCceEEEEEeCCeeE--EEEecCCCCceEEEEEcCCCCeEEEeCCcCCCCCccccceE
Confidence 445654 788999742 23677776789984 66777 3789999998765553 2 11
Q ss_pred EEEeeeccEEEeeeEEecCCC---CCCCcEEEcCCCceEEEeeeeeecCCCCee-----------------EeeeCCccE
Q 023514 97 LRLKECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLI-----------------DITRQSTDI 156 (281)
Q Consensus 97 i~i~~a~NVIIrnL~i~~g~~---~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~i-----------------d~~~~s~nV 156 (281)
+.+ .+++++.|||+|++..+ ...-|+.+ .+.++.+.+|.|.-..|-++ |+--+....
T Consensus 308 v~v-~~~~F~a~nitf~Ntag~~~~QAVALrv--~gDr~~fy~C~f~GyQDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~a 384 (529)
T PLN02170 308 VAA-MGDGFIARDITFVNSAGPNSEQAVALRV--GSDKSVVYRCSVEGYQDSLYTHSKRQFYRETDITGTVDFIFGNSAV 384 (529)
T ss_pred EEE-EcCCeEEEeeEEEecCCCCCCceEEEEe--cCCcEEEEeeeEeccCCcceeCCCCEEEEeeEEccccceecccceE
Confidence 344 48999999999998753 22344454 46789999999976555543 333344456
Q ss_pred EEeccEEccCC----ceeee--cCCCCCCCCcceEEEEeceeecCCC----CCCccccCCeEEEEcceEeC------Ccc
Q 023514 157 TVSRCYFTQHD----KTMLI--GADPSHVGDRCIRVTIHHCLFDGTR----QRHPRLRFGKVHLYNNYTRN------WGI 220 (281)
Q Consensus 157 TIS~~~f~~h~----k~~li--G~~~~~~~d~~~~vT~hhN~f~~~~----~R~Pr~r~g~~hv~NN~~~n------~~~ 220 (281)
-+++|.|.... .+.+- |..+ .+...-..||+|.+.... .| |--.+.++-+.|.++.+ |..
T Consensus 385 vFq~C~I~~~~~~~~~g~ITAq~R~~---~~~~~Gfvf~~C~it~~~~~yLGR-PW~~ysrvVf~~t~l~~~I~p~GW~~ 460 (529)
T PLN02170 385 VFQSCNIAARKPSGDRNYVTAQGRSD---PNQNTGISIHNCRITAESMTYLGR-PWKEYSRTVVMQSFIDGSIHPSGWSP 460 (529)
T ss_pred EEeccEEEEecCCCCceEEEecCCCC---CCCCceEEEEeeEEecCCceeeeC-CCCCCceEEEEecccCCeecccccCC
Confidence 66777765431 12211 2111 112235788888886532 11 11123566677776653 332
Q ss_pred eeEEeccCceEEEEceEEecCC
Q 023514 221 YAVCASVESQIYSQCNIYEAGQ 242 (281)
Q Consensus 221 ~~i~~~~~a~v~~e~N~F~~g~ 242 (281)
+.-........+.|-|-+-+|.
T Consensus 461 W~~~~~~~t~~yaEy~n~GpGa 482 (529)
T PLN02170 461 WSGSFALKTLYYGEFGNSGPGS 482 (529)
T ss_pred CCCCCCCCceEEEEeccccCCC
Confidence 2212223444566766665553
No 43
>PLN02634 probable pectinesterase
Probab=97.06 E-value=0.095 Score=50.52 Aligned_cols=95 Identities=15% Similarity=0.228 Sum_probs=64.6
Q ss_pred hHHHHhhcC----CCeEEEEEeeeEEEecceeEe---cCceeEEeeccceEEe------------cC--------cEEEe
Q 023514 48 SLREGCRRR----EPLWIVFEVSGTIHLSSYLSV---SSYKTIDGRGQRIKLT------------GK--------GLRLK 100 (281)
Q Consensus 48 SLr~al~~~----~pr~Ivf~vsG~I~l~~~l~v---~sn~TI~G~G~g~~I~------------G~--------gi~i~ 100 (281)
|+++||++- ..|++|+-..|+. .+.+.| ++++||.|.|...|+. |. .+.+
T Consensus 70 TIQaAIda~P~~~~~r~vI~Ik~GvY--~EkV~Ip~~k~~ItL~G~g~~~TiIt~~~~a~~~~~~g~~~~T~~SaTv~V- 146 (359)
T PLN02634 70 SVQDAVDSVPKNNTMSVTIKINAGFY--REKVVVPATKPYITFQGAGRDVTAIEWHDRASDRGANGQQLRTYQTASVTV- 146 (359)
T ss_pred CHHHHHhhCcccCCccEEEEEeCceE--EEEEEEcCCCCeEEEEecCCCceEEEecccccccCCCCcccccccceEEEE-
Confidence 788999762 2355555568998 466777 3789999997665553 10 1344
Q ss_pred eeccEEEeeeEEecCCC--------CCCCcEEEcCCCceEEEeeeeeecCCCCee
Q 023514 101 ECEHVIICNLEFEGGRG--------HDVDGIQIKPNSRHIWIDRCSLRDYDDGLI 147 (281)
Q Consensus 101 ~a~NVIIrnL~i~~g~~--------~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~i 147 (281)
.+++++.+||+|++... ...-|+.+ .+.++-+.+|.|.-..|-++
T Consensus 147 ~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v--~gDra~f~~C~f~G~QDTL~ 199 (359)
T PLN02634 147 YANYFTARNISFKNTAPAPMPGMQGWQAVAFRI--SGDKAFFFGCGFYGAQDTLC 199 (359)
T ss_pred ECCCeEEEeCeEEeCCccCCCCCCCCceEEEEe--cCCcEEEEEeEEecccceee
Confidence 38899999999997642 12234444 46789999999986666554
No 44
>PLN02665 pectinesterase family protein
Probab=97.05 E-value=0.15 Score=49.38 Aligned_cols=96 Identities=13% Similarity=0.205 Sum_probs=66.0
Q ss_pred hHHHHhhcC----CCeEEEEEeeeEEEecceeEec---CceeEEeeccceEEe-cC------------cEEEeeeccEEE
Q 023514 48 SLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-GK------------GLRLKECEHVII 107 (281)
Q Consensus 48 SLr~al~~~----~pr~Ivf~vsG~I~l~~~l~v~---sn~TI~G~G~g~~I~-G~------------gi~i~~a~NVII 107 (281)
++++||++- ..|+||+-..|+.+ +.+.|. +++||.|++..-++. .. .+.+ .+++++.
T Consensus 82 TIq~AIdaiP~~~~~r~vI~Ik~GvY~--EkV~Ip~~kp~Itl~G~~~~~tiIt~~~~a~~~gT~~SaTv~v-~a~~F~a 158 (366)
T PLN02665 82 TITDAIKSIPAGNTQRVIIDIGPGEYN--EKITIDRSKPFVTLYGSPGAMPTLTFDGTAAKYGTVYSATLIV-ESDYFMA 158 (366)
T ss_pred CHHHHHhhCcccCCceEEEEEeCcEEE--EEEEecCCCCEEEEEecCCCCCEEEECCccCCCCCcceEEEEE-ECCCeEE
Confidence 799999762 33666666779884 667773 689999996543332 11 1444 4899999
Q ss_pred eeeEEecCCC--------CCCCcEEEcCCCceEEEeeeeeecCCCCeeE
Q 023514 108 CNLEFEGGRG--------HDVDGIQIKPNSRHIWIDRCSLRDYDDGLID 148 (281)
Q Consensus 108 rnL~i~~g~~--------~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~id 148 (281)
+||+|++... ...-|+.+ .+.++-+.+|.|.-..|-+++
T Consensus 159 ~nitf~Nta~~~~~~~~g~QAVAl~v--~gDka~f~~C~f~G~QDTL~~ 205 (366)
T PLN02665 159 ANIIIKNSAPRPDGKRKGAQAVAMRI--SGDKAAFYNCRFIGFQDTLCD 205 (366)
T ss_pred EeeEEEeCCCCcCCCCCCcceEEEEE--cCCcEEEEcceeccccceeEe
Confidence 9999998642 12334454 467899999999877776654
No 45
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=97.03 E-value=0.083 Score=53.66 Aligned_cols=195 Identities=15% Similarity=0.373 Sum_probs=113.1
Q ss_pred CCCCCh---hHHHHhhc----CCCeEEEEEeeeEEEecceeEec---CceeEEeeccceEEe-cC-------c------E
Q 023514 42 SDDGPG---SLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-GK-------G------L 97 (281)
Q Consensus 42 ~dsg~G---SLr~al~~----~~pr~Ivf~vsG~I~l~~~l~v~---sn~TI~G~G~g~~I~-G~-------g------i 97 (281)
+.+|.| ++++||++ +..|.||+-..|+++ +.+.|. +|+||.|.|.+.|+. +. + +
T Consensus 241 a~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~dg~~T~~SaT~ 318 (548)
T PLN02301 241 AKDGSGKYKTVKEAVASAPDNSKTRYVIYVKKGTYK--ENVEIGKKKKNLMLVGDGMDSTIITGSLNVIDGSTTFRSATV 318 (548)
T ss_pred CCCCCCCcccHHHHHHhhhhcCCceEEEEEeCceee--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCCceeeEEE
Confidence 345655 78889965 234667777789984 667774 689999998655553 11 1 3
Q ss_pred EEeeeccEEEeeeEEecCCCC-CCCcEEEcCCCceEEEeeeeeecCCCCe-----------------eEeeeCCccEEEe
Q 023514 98 RLKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGL-----------------IDITRQSTDITVS 159 (281)
Q Consensus 98 ~i~~a~NVIIrnL~i~~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dg~-----------------id~~~~s~nVTIS 159 (281)
.+ .+++++.|||+|++..+. ..-|+.+.-.+.+..+.+|.|.-..|-+ +|+--+....-++
T Consensus 319 ~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq 397 (548)
T PLN02301 319 AA-VGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDTLYAHSLRQFYRDSYITGTVDFIFGNAAVVFQ 397 (548)
T ss_pred EE-ECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccccceecCCcEEEEeeEEEeccceecccceeEEe
Confidence 33 389999999999986532 1233434335678999999997655543 3433344556677
Q ss_pred ccEEccCC-----ceeee--cCCCCCCCCcceEEEEeceeecCCCCCC------------ccccCCeEEEEcceEeC---
Q 023514 160 RCYFTQHD-----KTMLI--GADPSHVGDRCIRVTIHHCLFDGTRQRH------------PRLRFGKVHLYNNYTRN--- 217 (281)
Q Consensus 160 ~~~f~~h~-----k~~li--G~~~~~~~d~~~~vT~hhN~f~~~~~R~------------Pr~r~g~~hv~NN~~~n--- 217 (281)
+|.|.... ++.+- |..+ .+...-+.||+|.+.....=. |--.+.++-+.|.++.+
T Consensus 398 ~c~i~~~~~~~~~~~~iTAqgr~~---~~~~tG~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysr~V~~~s~l~~~I~ 474 (548)
T PLN02301 398 NCKIVARKPMAGQKNMVTAQGRTD---PNQNTGISIQKCDIIASSDLEPVKGSFKTYLGRPWKEYSRTVVMQSYIDDHID 474 (548)
T ss_pred ccEEEEecCCCCCCceEEecCCCC---CCCCCEEEEEeeEEecCccccccccccceeeecCCCCCceEEEEecccCCeec
Confidence 77776421 11111 2111 112235889999886543211 11123566777776643
Q ss_pred ---CcceeEEeccCceEEEEceEEecCC
Q 023514 218 ---WGIYAVCASVESQIYSQCNIYEAGQ 242 (281)
Q Consensus 218 ---~~~~~i~~~~~a~v~~e~N~F~~g~ 242 (281)
|..+.-......-.+.|-+-+-+|.
T Consensus 475 p~GW~~W~~~~~~~t~~yaEy~n~GpGa 502 (548)
T PLN02301 475 PAGWSPWDGEFALSTLYYGEYANRGPGA 502 (548)
T ss_pred ccccCccCCCCCCCceEEEEeccccCCC
Confidence 3322212233445566766555553
No 46
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=97.00 E-value=0.081 Score=54.87 Aligned_cols=195 Identities=18% Similarity=0.355 Sum_probs=113.2
Q ss_pred CCCCCCh---hHHHHhhc----CCCeEEEEEeeeEEEecceeEec---CceeEEeeccceEEe-cC-----c--------
Q 023514 41 LSDDGPG---SLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-GK-----G-------- 96 (281)
Q Consensus 41 l~dsg~G---SLr~al~~----~~pr~Ivf~vsG~I~l~~~l~v~---sn~TI~G~G~g~~I~-G~-----g-------- 96 (281)
.+.+|.| ++++||+. +..|.||+-..|++ .+.+.|. .|+|+.|.|.+-|+. +. |
T Consensus 254 Va~dGsG~f~TIq~Av~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~Gdg~~~TiIt~~~~~~dg~~T~~SAT 331 (670)
T PLN02217 254 VAQDGSGQYKTINEALNFVPKKKNTTFVVHIKAGIY--KEYVQVNRSMTHLVFIGDGPDKTVISGSKSYKDGITTYKTAT 331 (670)
T ss_pred ECCCCCCCccCHHHHHHhccccCCceEEEEEeCCce--EEEEEEcCCCCcEEEEecCCCCeEEEcCCccCCCCCccceEE
Confidence 3455665 78899976 23466666678988 4667774 578999998665554 21 1
Q ss_pred EEEeeeccEEEeeeEEecCCCC-CCCcEEEcCCCceEEEeeeeeecCCCC-----------------eeEeeeCCccEEE
Q 023514 97 LRLKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDG-----------------LIDITRQSTDITV 158 (281)
Q Consensus 97 i~i~~a~NVIIrnL~i~~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dg-----------------~id~~~~s~nVTI 158 (281)
+.+ .+++++.|||+|++..+. ..-|+.++-.+.+..+.+|.|.-..|- .+|+--+....-+
T Consensus 332 ~~v-~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avf 410 (670)
T PLN02217 332 VAI-VGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHSHRQFYRDCTISGTIDFLFGDAAAVF 410 (670)
T ss_pred EEE-ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCCCcEEEEeCEEEEeccEEecCceEEE
Confidence 344 389999999999987542 223444433578899999999754443 3444344556677
Q ss_pred eccEEccCC-----ceeee--cCCCCCCCCcceEEEEeceeecCCCCCC------------ccccCCeEEEEcceEeC--
Q 023514 159 SRCYFTQHD-----KTMLI--GADPSHVGDRCIRVTIHHCLFDGTRQRH------------PRLRFGKVHLYNNYTRN-- 217 (281)
Q Consensus 159 S~~~f~~h~-----k~~li--G~~~~~~~d~~~~vT~hhN~f~~~~~R~------------Pr~r~g~~hv~NN~~~n-- 217 (281)
++|.|.... ++.+- |..+ .+...-+.||+|.+.....=. |.-.+.++-+.|.++.+
T Consensus 411 q~C~I~~r~~~~~~~~~ITAqgr~~---~~~~tGfvf~~C~i~~~~~~~~~~~~~~~yLGRPW~~ysrvVf~~t~l~~~I 487 (670)
T PLN02217 411 QNCTLLVRKPLLNQACPITAHGRKD---PRESTGFVLQGCTIVGEPDYLAVKETSKAYLGRPWKEYSRTIIMNTFIPDFV 487 (670)
T ss_pred EccEEEEccCCCCCceeEecCCCCC---CCCCceEEEEeeEEecCccccccccccceeeccCCCCCceEEEEecccCCeE
Confidence 888876431 11111 2111 112346889999886643211 11123456677776643
Q ss_pred ----CcceeEEeccCceEEEEceEEecC
Q 023514 218 ----WGIYAVCASVESQIYSQCNIYEAG 241 (281)
Q Consensus 218 ----~~~~~i~~~~~a~v~~e~N~F~~g 241 (281)
|..+.-......-.+.|-+-+-+|
T Consensus 488 ~P~GW~~W~~~~~~~t~~yaEY~n~GpG 515 (670)
T PLN02217 488 PPEGWQPWLGDFGLNTLFYSEVQNTGPG 515 (670)
T ss_pred cCcccCccCCCCCCCceEEEEeccccCC
Confidence 332221222334455665555554
No 47
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=96.99 E-value=0.13 Score=52.11 Aligned_cols=197 Identities=16% Similarity=0.301 Sum_probs=110.8
Q ss_pred CCCCCCh---hHHHHhhcC----CCeEEEEEeeeEEEecceeEec---CceeEEeeccceEEe-cC-------------c
Q 023514 41 LSDDGPG---SLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-GK-------------G 96 (281)
Q Consensus 41 l~dsg~G---SLr~al~~~----~pr~Ivf~vsG~I~l~~~l~v~---sn~TI~G~G~g~~I~-G~-------------g 96 (281)
.+.+|.| +.++||++. ..|++|+-..|++. +.+.|. +|+||.|.|.+-|+. +. .
T Consensus 222 Va~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~itl~G~g~~~TiIt~~~~~~dg~~T~~SaT 299 (530)
T PLN02933 222 VAIDGTGNFTTINEAVSAAPNSSETRFIIYIKGGEYF--ENVELPKKKTMIMFIGDGIGKTVIKANRSRIDGWSTFQTAT 299 (530)
T ss_pred ECCCCCCCccCHHHHHHhchhcCCCcEEEEEcCceEE--EEEEecCCCceEEEEEcCCCCcEEEeCCccCCCCccccceE
Confidence 4455655 788899662 23566666789995 667773 689999997654443 11 1
Q ss_pred EEEeeeccEEEeeeEEecCCCC-CCCcEEEcCCCceEEEeeeeeecCCCCe-----------------eEeeeCCccEEE
Q 023514 97 LRLKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGL-----------------IDITRQSTDITV 158 (281)
Q Consensus 97 i~i~~a~NVIIrnL~i~~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dg~-----------------id~~~~s~nVTI 158 (281)
+.+. +++++.|||+|++..+. ..-|+.+.-.+.++-+.+|.|.-..|-+ +|+--+....-+
T Consensus 300 ~~v~-a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~IeGtVDFIFG~a~avF 378 (530)
T PLN02933 300 VGVK-GKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHSAKQFYRECDIYGTIDFIFGNAAVVF 378 (530)
T ss_pred EEEE-CCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccccccCCCceEEEeeEEecccceeccCceEEE
Confidence 4443 89999999999986532 1234444335788999999997655544 333334445566
Q ss_pred eccEEccCC-----ceeeecCCCCCCCCcceEEEEeceeecCCCCCC------------ccccCCeEEEEcceEeC----
Q 023514 159 SRCYFTQHD-----KTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRH------------PRLRFGKVHLYNNYTRN---- 217 (281)
Q Consensus 159 S~~~f~~h~-----k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~------------Pr~r~g~~hv~NN~~~n---- 217 (281)
++|.|.... ++.+--.+... .+...-+.||+|.+.....-. |--.+.++-+.+.++.+
T Consensus 379 q~C~i~~~~~~~~~~~~iTAq~r~~-~~~~tGfvf~~C~it~~~~~~~~~~~~~~yLGRPW~~ysrvVf~~s~l~~~I~p 457 (530)
T PLN02933 379 QNCSLYARKPNPNHKIAFTAQSRNQ-SDQPTGISIISSRILAAPDLIPVKENFKAYLGRPWRKYSRTVIIKSFIDDLIHP 457 (530)
T ss_pred eccEEEEeccCCCCceEEEecCCCC-CCCCceEEEEeeEEecCCcccccccccceEeccCCCCCceEEEEecccCCeecc
Confidence 777775321 12222111100 112235888999875533211 11113566677776643
Q ss_pred --CcceeEEeccCceEEEEceEEecC
Q 023514 218 --WGIYAVCASVESQIYSQCNIYEAG 241 (281)
Q Consensus 218 --~~~~~i~~~~~a~v~~e~N~F~~g 241 (281)
|..+.-......-.+.|-+-+-+|
T Consensus 458 ~GW~~W~~~~~~~t~~yaEY~n~GPG 483 (530)
T PLN02933 458 AGWLEWKKDFALETLYYGEYMNEGPG 483 (530)
T ss_pred cccCcCCCCCCCCceEEEEeccccCC
Confidence 332222222334455665555555
No 48
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=96.97 E-value=0.095 Score=52.90 Aligned_cols=197 Identities=15% Similarity=0.317 Sum_probs=110.4
Q ss_pred CCCCCh---hHHHHhhcC----CCeEEEEEeeeEEEecceeEec---CceeEEeeccceEEe-cC-----c--------E
Q 023514 42 SDDGPG---SLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-GK-----G--------L 97 (281)
Q Consensus 42 ~dsg~G---SLr~al~~~----~pr~Ivf~vsG~I~l~~~l~v~---sn~TI~G~G~g~~I~-G~-----g--------i 97 (281)
+.+|.| ++++||++- ..|++|+=..|+++ +.+.|. +|+||.|.|.+-|+. +. | +
T Consensus 211 a~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~ 288 (520)
T PLN02201 211 AADGTGNFTTIMDAVLAAPDYSTKRYVIYIKKGVYL--ENVEIKKKKWNIMMVGDGIDATVITGNRSFIDGWTTFRSATF 288 (520)
T ss_pred cCCCCCCccCHHHHHHhchhcCCCcEEEEEeCceeE--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcccceEEE
Confidence 345555 788999652 33566666789884 667774 689999997654443 11 1 3
Q ss_pred EEeeeccEEEeeeEEecCCCC-CCCcEEEcCCCceEEEeeeeeecCCCCee-----------------EeeeCCccEEEe
Q 023514 98 RLKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGLI-----------------DITRQSTDITVS 159 (281)
Q Consensus 98 ~i~~a~NVIIrnL~i~~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dg~i-----------------d~~~~s~nVTIS 159 (281)
.+ .+++++.|||+|++..+. ..-|+.+.-.+.+..+.+|.|.-..|-++ |+--+....-++
T Consensus 289 ~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avf~ 367 (520)
T PLN02201 289 AV-SGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHTMRQFYRECRITGTVDFIFGDATAVFQ 367 (520)
T ss_pred EE-ECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCeeEeCCCCEEEEeeEEeecccEEecCceEEEE
Confidence 44 389999999999986531 22344443356789999999976555443 333344456667
Q ss_pred ccEEccCC-----ceeeecCCCCCCCCcceEEEEeceeecCCCCCCc------------cccCCeEEEEcceEeC-----
Q 023514 160 RCYFTQHD-----KTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHP------------RLRFGKVHLYNNYTRN----- 217 (281)
Q Consensus 160 ~~~f~~h~-----k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~P------------r~r~g~~hv~NN~~~n----- 217 (281)
+|.|.... .+.+--.+... .+...-..||+|.+.....-.| --.+.++-+.|.++.+
T Consensus 368 ~C~i~~~~~~~~~~~~iTAq~r~~-~~~~~Gfvf~~C~it~~~~~~~~~~~~~~yLGRPW~~ysrvv~~~t~l~~~I~p~ 446 (520)
T PLN02201 368 NCQILAKKGLPNQKNTITAQGRKD-PNQPTGFSIQFSNISADTDLLPYLNTTATYLGRPWKLYSRTVFMQNYMSDAIRPE 446 (520)
T ss_pred ccEEEEecCCCCCCceEEecCCCC-CCCCcEEEEEeeEEecCccccccccccceEeecCCCCCceEEEEecCcCCeEccc
Confidence 77776421 11211111000 1122357889988855332111 1113456666766643
Q ss_pred -CcceeEEeccCceEEEEceEEecCC
Q 023514 218 -WGIYAVCASVESQIYSQCNIYEAGQ 242 (281)
Q Consensus 218 -~~~~~i~~~~~a~v~~e~N~F~~g~ 242 (281)
|..+.-......-.+.|-+-+-+|.
T Consensus 447 GW~~W~~~~~~~t~~y~Ey~n~GpGa 472 (520)
T PLN02201 447 GWLEWNGNFALDTLYYGEYMNYGPGA 472 (520)
T ss_pred ccCcCCCCCCcCceEEEEeccccCCC
Confidence 3322212223344566666555553
No 49
>smart00656 Amb_all Amb_all domain.
Probab=96.96 E-value=0.027 Score=49.41 Aligned_cols=132 Identities=19% Similarity=0.199 Sum_probs=82.8
Q ss_pred CceeEEeeccceEEecCcEEEeeeccEEEeeeEEecCC-----CCCCCc-EEEcCCCceEEEeeeeeecCCCCeeEeeeC
Q 023514 79 SYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGR-----GHDVDG-IQIKPNSRHIWIDRCSLRDYDDGLIDITRQ 152 (281)
Q Consensus 79 sn~TI~G~G~g~~I~G~gi~i~~a~NVIIrnL~i~~g~-----~~~~Da-I~i~~~s~nVwIDHcs~s~~~Dg~id~~~~ 152 (281)
.|++|.+..+.....+.+|.+.+++||.|.|.+|..+. ....|+ +.+..++.+|-|-.|.|....-+++-...+
T Consensus 45 rnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d 124 (190)
T smart00656 45 RNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSD 124 (190)
T ss_pred eCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCCEEEEEccCC
Confidence 46677664332122345788888999999999999762 111344 455546788888888887655554433222
Q ss_pred Cc------cEEEeccEEccCCceeeecCCCCCCCCcceEEEEeceeecCCCCCCccccC-CeEEEEcceEeCC
Q 023514 153 ST------DITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRF-GKVHLYNNYTRNW 218 (281)
Q Consensus 153 s~------nVTIS~~~f~~h~k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~r~-g~~hv~NN~~~n~ 218 (281)
.+ .||+.+|+|++... ..+ .. +.-.+=+.+|+|.+.....--.+. +++.+.||||.+.
T Consensus 125 ~~~~~~~~~vT~h~N~~~~~~~-----R~P-~~--r~g~~hv~NN~~~n~~~~~~~~~~~~~v~~E~N~F~~~ 189 (190)
T smart00656 125 SDTDDGKMRVTIAHNYFGNLRQ-----RAP-RV--RFGYVHVYNNYYTGWTSYAIGGRMGATILSEGNYFEAP 189 (190)
T ss_pred CccccccceEEEECcEEcCccc-----CCC-cc--cCCEEEEEeeEEeCcccEeEecCCCcEEEEECeEEECC
Confidence 22 69999999985321 111 11 111577789999887644333332 5789999999874
No 50
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=96.95 E-value=0.1 Score=52.33 Aligned_cols=195 Identities=15% Similarity=0.357 Sum_probs=114.1
Q ss_pred CCCCCh---hHHHHhhcC----CCeEEEEEeeeEEEecceeEec---CceeEEeeccceEEe-cC-----c--------E
Q 023514 42 SDDGPG---SLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-GK-----G--------L 97 (281)
Q Consensus 42 ~dsg~G---SLr~al~~~----~pr~Ivf~vsG~I~l~~~l~v~---sn~TI~G~G~g~~I~-G~-----g--------i 97 (281)
+.+|.| ++++||++. ..|.+|+=..|+++ +.+.|. +|+||.|.|.+-||. +. + +
T Consensus 202 a~dGsG~f~TIq~AI~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~nItliGdg~~~TiIt~n~~~~~g~~T~~SATv 279 (509)
T PLN02488 202 AKDGSGKYNTVNAAIAAAPEHSRKRFVIYIKTGVYD--EIVRIGSTKPNLTLIGDGQDSTIITGNLSASNGKRTFYTATV 279 (509)
T ss_pred CCCCCCCccCHHHHHHhchhcCCCcEEEEEeCCeeE--EEEEecCCCccEEEEecCCCceEEEEcccccCCCCceeeEEE
Confidence 345554 688899652 33666666789884 667773 689999998765554 21 1 3
Q ss_pred EEeeeccEEEeeeEEecCCCC-CCCcEEEcCCCceEEEeeeeeecCCCCe-----------------eEeeeCCccEEEe
Q 023514 98 RLKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGL-----------------IDITRQSTDITVS 159 (281)
Q Consensus 98 ~i~~a~NVIIrnL~i~~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dg~-----------------id~~~~s~nVTIS 159 (281)
.+ .+++++.|||+|++..+. ..-|+.++-.+....+.+|.|.-..|-+ +|+--+...+-++
T Consensus 280 ~v-~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~~RqyyrdC~I~GtVDFIFG~a~avFq 358 (509)
T PLN02488 280 AS-NGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHRDRQFYRECFITGTVDFICGNAAAVFQ 358 (509)
T ss_pred EE-EcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCCCCEEEEeeEEeeccceEecceEEEEE
Confidence 33 389999999999986532 2345555445788999999997655544 3333344556778
Q ss_pred ccEEccCC-----ceeee--cCCCCCCCCcceEEEEeceeecCCCCCCc-----cc-------cCCeEEEEcceEeC---
Q 023514 160 RCYFTQHD-----KTMLI--GADPSHVGDRCIRVTIHHCLFDGTRQRHP-----RL-------RFGKVHLYNNYTRN--- 217 (281)
Q Consensus 160 ~~~f~~h~-----k~~li--G~~~~~~~d~~~~vT~hhN~f~~~~~R~P-----r~-------r~g~~hv~NN~~~n--- 217 (281)
+|.|.... ++.+- |..+ .....-+.||+|.+.....-.| +. .+.++-+.+.++.+
T Consensus 359 ~C~I~sr~~~~~~~~~ITAq~R~~---~~~~tGfvf~~C~it~~~~~~~~~~~~~~YLGRPW~~ySrvVf~~s~i~~~I~ 435 (509)
T PLN02488 359 FCQIVARQPMMGQSNVITAQSRES---KDDNSGFSIQKCNITASSDLDPVKATVKTYLGRPWRKYSTVAVLQSFIGDLVD 435 (509)
T ss_pred ccEEEEecCCCCCCEEEEeCCCCC---CCCCcEEEEEeeEEecCCcccccccccceeecCCCCCCccEEEEeccCCCeec
Confidence 88876432 12221 1111 1122358899998876554333 11 12456666666643
Q ss_pred ---CcceeEEeccCceEEEEceEEecCC
Q 023514 218 ---WGIYAVCASVESQIYSQCNIYEAGQ 242 (281)
Q Consensus 218 ---~~~~~i~~~~~a~v~~e~N~F~~g~ 242 (281)
|..+.-......-.+.|-+-+-+|.
T Consensus 436 P~GW~~W~~~~~~~t~~yaEY~n~GPGA 463 (509)
T PLN02488 436 PAGWTPWEGETGLSTLYYGEYQNRGPGA 463 (509)
T ss_pred ccccCccCCCCCCCceEEEEecccCCCC
Confidence 3322222223345566766665553
No 51
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=96.92 E-value=0.14 Score=52.30 Aligned_cols=196 Identities=15% Similarity=0.346 Sum_probs=111.8
Q ss_pred CCCCCCh---hHHHHhhcC----CCeEEEEEeeeEEEecceeEec---CceeEEeeccceEEe-cC-----c--------
Q 023514 41 LSDDGPG---SLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-GK-----G-------- 96 (281)
Q Consensus 41 l~dsg~G---SLr~al~~~----~pr~Ivf~vsG~I~l~~~l~v~---sn~TI~G~G~g~~I~-G~-----g-------- 96 (281)
.+.+|.| ++++||++- ..|.||+-..|+++ +.+.|. +|+||.|.|.+-|+. +. +
T Consensus 263 Va~dGsG~f~TIq~Av~a~p~~~~~r~vI~Ik~GvY~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~~T~~sa 340 (572)
T PLN02990 263 VAQDGSGQYKTINEALNAVPKANQKPFVIYIKQGVYN--EKVDVTKKMTHVTFIGDGPTKTKITGSLNFYIGKVKTYLTA 340 (572)
T ss_pred ECCCCCCCCcCHHHHHhhCcccCCceEEEEEeCceeE--EEEEecCCCCcEEEEecCCCceEEEeccccCCCCccceeee
Confidence 3455665 788999762 23566666789884 667774 689999997654443 11 1
Q ss_pred -EEEeeeccEEEeeeEEecCCCC-CCCcEEEcCCCceEEEeeeeeecCCCC-----------------eeEeeeCCccEE
Q 023514 97 -LRLKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDG-----------------LIDITRQSTDIT 157 (281)
Q Consensus 97 -i~i~~a~NVIIrnL~i~~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dg-----------------~id~~~~s~nVT 157 (281)
+.+ .+++++.|||+|++..+. ..-|+.+.-.+....+.+|.|.-..|- .+|+--+....-
T Consensus 341 T~~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~av 419 (572)
T PLN02990 341 TVAI-NGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLYVHSHRQFFRDCTVSGTVDFIFGDAKVV 419 (572)
T ss_pred EEEE-EcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhccCCCcEEEEeeEEecccceEccCceEE
Confidence 333 389999999999986532 223444433567899999999755443 334433445566
Q ss_pred EeccEEccCC-----ceeee--cCCCCCCCCcceEEEEeceeecCCCCCCc------------cccCCeEEEEcceEeC-
Q 023514 158 VSRCYFTQHD-----KTMLI--GADPSHVGDRCIRVTIHHCLFDGTRQRHP------------RLRFGKVHLYNNYTRN- 217 (281)
Q Consensus 158 IS~~~f~~h~-----k~~li--G~~~~~~~d~~~~vT~hhN~f~~~~~R~P------------r~r~g~~hv~NN~~~n- 217 (281)
+++|.|.... ++.+- |..+ .....-+.||+|.+.....=.| --.+.++-+.|.++.+
T Consensus 420 f~~C~i~~~~~~~~~~~~iTAq~r~~---~~~~~G~vf~~C~it~~~~~~~~~~~~~~yLGRpW~~ysrvV~~~s~i~~~ 496 (572)
T PLN02990 420 LQNCNIVVRKPMKGQSCMITAQGRSD---VRESTGLVLQNCHITGEPAYIPVKSINKAYLGRPWKEFSRTIIMGTTIDDV 496 (572)
T ss_pred EEccEEEEecCCCCCceEEEeCCCCC---CCCCceEEEEeeEEecCccccccccccceEeecCCCCCceEEEEecccCCe
Confidence 7888876421 12222 2111 1122358899998866442111 1113456666666543
Q ss_pred -----CcceeEEeccCceEEEEceEEecCC
Q 023514 218 -----WGIYAVCASVESQIYSQCNIYEAGQ 242 (281)
Q Consensus 218 -----~~~~~i~~~~~a~v~~e~N~F~~g~ 242 (281)
|..+.-........+.|-+-+-+|.
T Consensus 497 I~p~GW~~w~~~~~~~t~~y~Ey~n~GpGa 526 (572)
T PLN02990 497 IDPAGWLPWNGDFALNTLYYAEYENNGPGS 526 (572)
T ss_pred ecccccCccCCCCCCCceEEEEeccccCCC
Confidence 3222111223344566655555553
No 52
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=96.83 E-value=0.13 Score=52.68 Aligned_cols=193 Identities=17% Similarity=0.338 Sum_probs=111.7
Q ss_pred CCCCCh---hHHHHhhcC----CCeEEEEEeeeEEEecceeEec---CceeEEeeccceEEe-cC-----c--------E
Q 023514 42 SDDGPG---SLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-GK-----G--------L 97 (281)
Q Consensus 42 ~dsg~G---SLr~al~~~----~pr~Ivf~vsG~I~l~~~l~v~---sn~TI~G~G~g~~I~-G~-----g--------i 97 (281)
+.+|.| ++++||++. ..|+||+=..|+++ +.+.|. +|+||.|.|.+-|+. +. + +
T Consensus 290 a~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~ 367 (596)
T PLN02745 290 AKDGSGNFTTISDALAAMPAKYEGRYVIYVKQGIYD--ETVTVDKKMVNVTMYGDGSQKTIVTGNKNFADGVRTFRTATF 367 (596)
T ss_pred CCCCCCCcccHHHHHHhccccCCceEEEEEeCCeeE--EEEEEcCCCceEEEEecCCCceEEEECCcccCCCcceeeEEE
Confidence 345555 788999762 34666666789884 567774 589999998655443 21 1 3
Q ss_pred EEeeeccEEEeeeEEecCCC---CCCCcEEEcCCCceEEEeeeeeecCCCCe-----------------eEeeeCCccEE
Q 023514 98 RLKECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGL-----------------IDITRQSTDIT 157 (281)
Q Consensus 98 ~i~~a~NVIIrnL~i~~g~~---~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~-----------------id~~~~s~nVT 157 (281)
.+ .+++++.|||+|++..+ ...-|+.+ .+.+..+.+|.|.-..|-+ +|+--+....-
T Consensus 368 ~v-~~~~F~a~nitf~Ntag~~~~QAVAl~v--~~Dr~~f~~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~av 444 (596)
T PLN02745 368 VA-LGEGFMAKSMGFRNTAGPEKHQAVAIRV--QSDRSIFLNCRFEGYQDTLYAQTHRQFYRSCVITGTIDFIFGDAAAI 444 (596)
T ss_pred EE-EcCCEEEEeeEEEECCCCCCCceEEEEE--cCCcEEEEeeEEeecccccccCCCcEEEEeeEEEeeccEEecceeEE
Confidence 44 48999999999998653 22344444 5688999999997554443 34433445566
Q ss_pred EeccEEccCC-----ceeee--cCCCCCCCCcceEEEEeceeecCCCCCCc-----cc-------cCCeEEEEcceEeC-
Q 023514 158 VSRCYFTQHD-----KTMLI--GADPSHVGDRCIRVTIHHCLFDGTRQRHP-----RL-------RFGKVHLYNNYTRN- 217 (281)
Q Consensus 158 IS~~~f~~h~-----k~~li--G~~~~~~~d~~~~vT~hhN~f~~~~~R~P-----r~-------r~g~~hv~NN~~~n- 217 (281)
+++|.|.... .+.+- |..+ .+...-+.||+|.+.....-.| +. .+.++-+.|.++.+
T Consensus 445 f~~C~i~~~~~~~~~~~~iTAq~r~~---~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysrvv~~~s~l~~~ 521 (596)
T PLN02745 445 FQNCLIFVRKPLPNQQNTVTAQGRVD---KFETTGIVLQNCRIAPDEDLKPVKTEVKSYLGRPWKEFSRTIVMESTIEDV 521 (596)
T ss_pred EEecEEEEecCCCCCCceEEecCCCC---CCCCceEEEEeeEEecCccccccccccceeccCCCCCCccEEEEecccCCe
Confidence 7777776421 11111 1111 1122468889998876443322 11 12456666666543
Q ss_pred -----CcceeEEeccCceEEEEceEEecCC
Q 023514 218 -----WGIYAVCASVESQIYSQCNIYEAGQ 242 (281)
Q Consensus 218 -----~~~~~i~~~~~a~v~~e~N~F~~g~ 242 (281)
|..+.-......-.+.|-|-+-+|.
T Consensus 522 I~p~GW~~W~~~~~~~t~~y~Ey~n~GpGa 551 (596)
T PLN02745 522 IDPVGWLRWEGDFALDTLYYAEYNNKGPGG 551 (596)
T ss_pred EccCCcCCCCCCCCCCceEEEEecccCCCC
Confidence 3322212223444566766666553
No 53
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=96.78 E-value=0.19 Score=51.17 Aligned_cols=150 Identities=16% Similarity=0.316 Sum_probs=93.1
Q ss_pred CCCCCCh---hHHHHhhcC-----CCeEEEEEeeeEEEecceeEe---cCceeEEeeccceEEe-c------Cc------
Q 023514 41 LSDDGPG---SLREGCRRR-----EPLWIVFEVSGTIHLSSYLSV---SSYKTIDGRGQRIKLT-G------KG------ 96 (281)
Q Consensus 41 l~dsg~G---SLr~al~~~-----~pr~Ivf~vsG~I~l~~~l~v---~sn~TI~G~G~g~~I~-G------~g------ 96 (281)
.+.+|.| +.++||++. ..|.||+-..|+++ +.+.| ..|+||+|.|.+-|+. + .|
T Consensus 245 Va~dGsg~f~TIq~Av~a~p~~~~~~r~vI~vk~GvY~--E~V~i~~~k~~v~l~G~g~~~TiIt~~~~~~~~g~~T~~s 322 (553)
T PLN02708 245 VCKDGNCCYKTVQEAVNAAPDNNGDRKFVIRIKEGVYE--ETVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNT 322 (553)
T ss_pred ECCCCCCCccCHHHHHHhhhhccCCccEEEEEeCceEE--eeeeecCCCccEEEEecCCCceEEEecCccCCCCcCccce
Confidence 3445554 788888652 34667776789985 56666 3689999998655554 1 12
Q ss_pred --EEEeeeccEEEeeeEEecCCCCC-CCcEEEcCCCceEEEeeeeeecCCC-----------------CeeEeeeCCccE
Q 023514 97 --LRLKECEHVIICNLEFEGGRGHD-VDGIQIKPNSRHIWIDRCSLRDYDD-----------------GLIDITRQSTDI 156 (281)
Q Consensus 97 --i~i~~a~NVIIrnL~i~~g~~~~-~DaI~i~~~s~nVwIDHcs~s~~~D-----------------g~id~~~~s~nV 156 (281)
+.+ .+++++.|||+|++..+.+ .-|+.++-.+.++.+.+|.|.-..| |.+|+--+...+
T Consensus 323 aT~~v-~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~rq~y~~C~I~GtVDFIFG~a~a 401 (553)
T PLN02708 323 ATVGV-LGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHSLRQFYKSCRIQGNVDFIFGNSAA 401 (553)
T ss_pred EEEEE-EcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccccceeCCCceEEEeeEEeecCCEEecCceE
Confidence 344 3899999999999876422 2445444457899999999975444 334443445567
Q ss_pred EEeccEEccCC---------ceeee--cCCCCCCCCcceEEEEeceeecCC
Q 023514 157 TVSRCYFTQHD---------KTMLI--GADPSHVGDRCIRVTIHHCLFDGT 196 (281)
Q Consensus 157 TIS~~~f~~h~---------k~~li--G~~~~~~~d~~~~vT~hhN~f~~~ 196 (281)
-+++|.|.... ++..- |..+ .+...-+.||+|.+...
T Consensus 402 vfq~c~i~~~~~~~~~~~~~~~~iTA~~r~~---~~~~~G~vf~~C~it~~ 449 (553)
T PLN02708 402 VFQDCAILIAPRQLKPEKGENNAVTAHGRTD---PAQSTGFVFQNCLINGT 449 (553)
T ss_pred EEEccEEEEeccccCCCCCCceEEEeCCCCC---CCCCceEEEEccEEecC
Confidence 77888876321 11111 1111 11223578899988554
No 54
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=96.74 E-value=0.16 Score=51.93 Aligned_cols=194 Identities=12% Similarity=0.279 Sum_probs=110.8
Q ss_pred CCCCh---hHHHHhhc----CCCeEEEEEeeeEEEecceeEec---CceeEEeeccceEEec--------C------cEE
Q 023514 43 DDGPG---SLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLTG--------K------GLR 98 (281)
Q Consensus 43 dsg~G---SLr~al~~----~~pr~Ivf~vsG~I~l~~~l~v~---sn~TI~G~G~g~~I~G--------~------gi~ 98 (281)
.+|.| +.++||+. +..|.||+-..|++. +.+.|. .|+||.|.|.+-||.- . .+.
T Consensus 264 ~dGsg~f~tI~~Av~a~p~~~~~~~vI~ik~GvY~--E~V~i~~~k~~i~~~G~g~~~tiIt~~~~~~dg~~t~~saT~~ 341 (565)
T PLN02468 264 KDGSGKYKTISEALKDVPEKSEKRTIIYVKKGVYF--ENVRVEKKKWNVVMVGDGMSKTIVSGSLNFVDGTPTFSTATFA 341 (565)
T ss_pred CCCCCCccCHHHHHHhchhcCCCcEEEEEeCCceE--EEEEecCCCCeEEEEecCCCCCEEEeCCccCCCCCccceeeee
Confidence 34555 67888865 234666776789984 667774 5799999986555431 1 134
Q ss_pred EeeeccEEEeeeEEecCCCC-CCCcEEEcCCCceEEEeeeeeecCCCC-----------------eeEeeeCCccEEEec
Q 023514 99 LKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDG-----------------LIDITRQSTDITVSR 160 (281)
Q Consensus 99 i~~a~NVIIrnL~i~~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dg-----------------~id~~~~s~nVTIS~ 160 (281)
+ .+++++.|||+|++..+. ..-|+.+.-.+.+..+.+|.|.-..|- .+|+--+...+-+++
T Consensus 342 v-~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~~rq~y~~C~I~GtvDFIFG~a~avfq~ 420 (565)
T PLN02468 342 V-FGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLYAHAQRQFYRECNIYGTVDFIFGNSAVVFQN 420 (565)
T ss_pred E-ECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchhccCCCceEEEeeEEecccceeeccceEEEec
Confidence 4 389999999999976532 123444433577899999999754443 344444555677788
Q ss_pred cEEccCC-----ceeee--cCCCCCCCCcceEEEEeceeecCCCCC--C------ccccCCeEEEEcceEeC------Cc
Q 023514 161 CYFTQHD-----KTMLI--GADPSHVGDRCIRVTIHHCLFDGTRQR--H------PRLRFGKVHLYNNYTRN------WG 219 (281)
Q Consensus 161 ~~f~~h~-----k~~li--G~~~~~~~d~~~~vT~hhN~f~~~~~R--~------Pr~r~g~~hv~NN~~~n------~~ 219 (281)
|.|.... ++..- |..+ .+...-+.||+|.+.....- . |--.+.++-+.|.++.. |.
T Consensus 421 c~i~~~~~~~~~~~~iTA~~r~~---~~~~~G~vf~~c~i~~~~~~~~~~~yLGRPW~~~sr~v~~~s~~~~~I~p~GW~ 497 (565)
T PLN02468 421 CNILPRRPMKGQQNTITAQGRTD---PNQNTGISIQNCTILPLGDLTSVKTFLGRPWKNYSTTVIMHSMMGSLIDPKGWL 497 (565)
T ss_pred cEEEEecCCCCCCceEEecCCCC---CCCCceEEEEccEEecCCCccccceeeecCCCCCceEEEEecccCCeEccccCC
Confidence 8875321 11111 2111 11223588899988653210 0 11123456667776643 33
Q ss_pred ceeEEeccCceEEEEceEEecCC
Q 023514 220 IYAVCASVESQIYSQCNIYEAGQ 242 (281)
Q Consensus 220 ~~~i~~~~~a~v~~e~N~F~~g~ 242 (281)
.+.-........+.|-+-+-+|.
T Consensus 498 ~w~~~~~~~t~~y~Ey~n~GpGa 520 (565)
T PLN02468 498 PWTGDTAPPTIFYAEFQNFGPGA 520 (565)
T ss_pred CCCCCCCcCceEEEEeecccCCC
Confidence 22222223345666766555553
No 55
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=96.72 E-value=0.15 Score=52.30 Aligned_cols=193 Identities=15% Similarity=0.344 Sum_probs=112.5
Q ss_pred CCCCh---hHHHHhhcC----CCeEEEEEeeeEEEecceeEec---CceeEEeeccceEEe-cC-------------cEE
Q 023514 43 DDGPG---SLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-GK-------------GLR 98 (281)
Q Consensus 43 dsg~G---SLr~al~~~----~pr~Ivf~vsG~I~l~~~l~v~---sn~TI~G~G~g~~I~-G~-------------gi~ 98 (281)
.+|.| ++++||+.. ..|.||+-..|+++ +.+.|. +|+||+|.|.+-||. +. .+.
T Consensus 281 ~dGsG~f~TI~~Av~a~p~~~~~r~vI~ik~GvY~--E~V~i~~~k~ni~l~Gdg~~~TiIt~~~~~~~g~~t~~sat~~ 358 (587)
T PLN02313 281 ADGSGDFTTVAAAVAAAPEKSNKRFVIHIKAGVYR--ENVEVTKKKKNIMFLGDGRGKTIITGSRNVVDGSTTFHSATVA 358 (587)
T ss_pred CCCCCCCccHHHHHHhccccCCceEEEEEeCceeE--EEEEeCCCCCeEEEEecCCCccEEEeCCcccCCCCceeeEEEE
Confidence 34554 788899652 34666766789884 667774 689999998655544 21 133
Q ss_pred EeeeccEEEeeeEEecCCCC-CCCcEEEcCCCceEEEeeeeeecCCC-----------------CeeEeeeCCccEEEec
Q 023514 99 LKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDD-----------------GLIDITRQSTDITVSR 160 (281)
Q Consensus 99 i~~a~NVIIrnL~i~~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~D-----------------g~id~~~~s~nVTIS~ 160 (281)
+ .+++++.|||+|++..+. ..-|+.++-.+....+.+|.|.-..| |.+|+--+...+-+++
T Consensus 359 v-~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~~rq~y~~c~I~GtvDFIFG~a~avfq~ 437 (587)
T PLN02313 359 A-VGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSNRQFFVKCHITGTVDFIFGNAAAVLQD 437 (587)
T ss_pred E-ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccchhccCCCcEEEEeeEEeeccceeccceeEEEEc
Confidence 3 389999999999987542 12344443357889999999975444 3344434555677888
Q ss_pred cEEccCC-----ceeee--cCCCCCCCCcceEEEEeceeecCCCC------CCc------cccCCeEEEEcceEeC----
Q 023514 161 CYFTQHD-----KTMLI--GADPSHVGDRCIRVTIHHCLFDGTRQ------RHP------RLRFGKVHLYNNYTRN---- 217 (281)
Q Consensus 161 ~~f~~h~-----k~~li--G~~~~~~~d~~~~vT~hhN~f~~~~~------R~P------r~r~g~~hv~NN~~~n---- 217 (281)
|.|.... ++.+- |..+. +...-+.||+|.+..... +.| --.+.++-+.+.++.+
T Consensus 438 c~i~~r~~~~~~~~~iTAqgr~~~---~~~tG~v~~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysr~v~~~s~i~~~I~p 514 (587)
T PLN02313 438 CDINARRPNSGQKNMVTAQGRSDP---NQNTGIVIQNCRIGGTSDLLAVKGTFPTYLGRPWKEYSRTVIMQSDISDVIRP 514 (587)
T ss_pred cEEEEecCCCCCcceEEecCCCCC---CCCceEEEEecEEecCCccccccccchhhccCCCCCCccEEEEecccCCeEcC
Confidence 8887431 11221 22221 123468899998854332 112 1123456677776654
Q ss_pred --CcceeEEeccCceEEEEceEEecC
Q 023514 218 --WGIYAVCASVESQIYSQCNIYEAG 241 (281)
Q Consensus 218 --~~~~~i~~~~~a~v~~e~N~F~~g 241 (281)
|..+.-......-.+.|-+-.-+|
T Consensus 515 ~GW~~w~~~~~~~t~~y~Ey~n~GpG 540 (587)
T PLN02313 515 EGWSEWSGSFALDTLTYREYLNRGGG 540 (587)
T ss_pred cccCccCCCCCCCceEEEEeccccCC
Confidence 333222222334456665555554
No 56
>PLN02671 pectinesterase
Probab=96.70 E-value=0.49 Score=45.69 Aligned_cols=96 Identities=11% Similarity=0.182 Sum_probs=64.1
Q ss_pred hHHHHhhcC----CCeEEEEEeeeEEEecceeEe---cCceeEEeecc---ceEEec-----------C--------cEE
Q 023514 48 SLREGCRRR----EPLWIVFEVSGTIHLSSYLSV---SSYKTIDGRGQ---RIKLTG-----------K--------GLR 98 (281)
Q Consensus 48 SLr~al~~~----~pr~Ivf~vsG~I~l~~~l~v---~sn~TI~G~G~---g~~I~G-----------~--------gi~ 98 (281)
++++||++- ..+++|+=..|+. .+.+.| .+++||.|.|. ...|.. . .+.
T Consensus 73 TIQ~AIdavP~~~~~~~~I~Ik~GvY--~EkV~I~~~k~~Itl~G~g~~~~~TvIt~~~~a~~~~~~g~~~gT~~SaTv~ 150 (359)
T PLN02671 73 TVQGAVDMVPDYNSQRVKIYILPGIY--REKVLVPKSKPYISFIGNESRAGDTVISWNDKASDLDSNGFELGTYRTASVT 150 (359)
T ss_pred CHHHHHHhchhcCCccEEEEEeCceE--EEEEEECCCCCeEEEEecCCCCCCEEEEcCCcccccccCCccccceeeEEEE
Confidence 788999652 2355555568988 466777 37899999863 333441 0 133
Q ss_pred EeeeccEEEeeeEEecCCC-------CCCCcEEEcCCCceEEEeeeeeecCCCCeeE
Q 023514 99 LKECEHVIICNLEFEGGRG-------HDVDGIQIKPNSRHIWIDRCSLRDYDDGLID 148 (281)
Q Consensus 99 i~~a~NVIIrnL~i~~g~~-------~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~id 148 (281)
+ .+++++.+||+|++... ...-|+.+ .+.++-+.+|.|.-..|-+++
T Consensus 151 v-~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv--~gDra~f~~c~f~G~QDTLy~ 204 (359)
T PLN02671 151 I-ESDYFCATGITFENTVVAEPGGQGMQAVALRI--SGDKAFFYKVRVLGAQDTLLD 204 (359)
T ss_pred E-ECCceEEEeeEEEcCCCCCCCCCCccEEEEEE--cCccEEEEcceEeccccccEe
Confidence 3 37999999999998631 12344555 467899999999877776653
No 57
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=96.69 E-value=0.2 Score=50.83 Aligned_cols=188 Identities=14% Similarity=0.360 Sum_probs=110.1
Q ss_pred hHHHHhhcC---C----CeEEEEEeeeEEEecceeEec---CceeEEeeccceEEe-cC-------------cEEEeeec
Q 023514 48 SLREGCRRR---E----PLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-GK-------------GLRLKECE 103 (281)
Q Consensus 48 SLr~al~~~---~----pr~Ivf~vsG~I~l~~~l~v~---sn~TI~G~G~g~~I~-G~-------------gi~i~~a~ 103 (281)
++++||++. . .|.||+-..|+++ +.+.|. +|+||.|.|.+-||. +. .+.+ .++
T Consensus 237 TI~~Av~a~p~~~~~~~~r~vI~vk~G~Y~--E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~dg~~T~~saT~~v-~~~ 313 (538)
T PLN03043 237 TITDAIAAAPNNSKPEDGYFVIYAREGYYE--EYVVVPKNKKNIMLIGDGINKTIITGNHSVVDGWTTFNSSTFAV-SGE 313 (538)
T ss_pred CHHHHHHhccccCCCCcceEEEEEcCeeeE--EEEEeCCCCCcEEEEecCCCCeEEEeCCccCCCCccccceEEEE-ECC
Confidence 788899652 1 2566776789984 667773 789999998655443 21 1444 389
Q ss_pred cEEEeeeEEecCCCC-CCCcEEEcCCCceEEEeeeeeecCCCC-----------------eeEeeeCCccEEEeccEEcc
Q 023514 104 HVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDG-----------------LIDITRQSTDITVSRCYFTQ 165 (281)
Q Consensus 104 NVIIrnL~i~~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dg-----------------~id~~~~s~nVTIS~~~f~~ 165 (281)
+++.|||+|++..+. ..-|+.++-.+....+.+|+|.-..|- .+|+--+...+-+++|.|..
T Consensus 314 ~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~~rq~y~~c~I~GtVDFIFG~a~avfq~c~i~~ 393 (538)
T PLN03043 314 RFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAIFQNCNLYA 393 (538)
T ss_pred CEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCCCcEEEEeeEEeeccceEeecceeeeeccEEEE
Confidence 999999999986531 223444443577899999999755443 33443445567788888864
Q ss_pred CC-----ceeee--cCCCCCCCCcceEEEEeceeecCCCCC----C--------ccccCCeEEEEcceEeC------Ccc
Q 023514 166 HD-----KTMLI--GADPSHVGDRCIRVTIHHCLFDGTRQR----H--------PRLRFGKVHLYNNYTRN------WGI 220 (281)
Q Consensus 166 h~-----k~~li--G~~~~~~~d~~~~vT~hhN~f~~~~~R----~--------Pr~r~g~~hv~NN~~~n------~~~ 220 (281)
.. ++.+- |..+ .+...-+.||+|.+.....= . |--.+.++-+.+.++.+ |..
T Consensus 394 r~~~~~~~~~iTA~~r~~---~~~~tG~~~~~c~i~~~~~~~~~~~~~~~yLGRpW~~ysr~v~~~s~i~~~I~p~GW~~ 470 (538)
T PLN03043 394 RKPMANQKNAFTAQGRTD---PNQNTGISIINCTIEAAPDLAMDPNSTMNFLGRPWKPYSRTVYMQSYIGDLIQPVGWLE 470 (538)
T ss_pred ecCCCCCCceEEecCCCC---CCCCceEEEEecEEecCCcccccccccceeccCCCCCCceEEEEecccCCeecccccCC
Confidence 31 12221 2211 12234688999988653221 0 11123567777777654 332
Q ss_pred eeEEeccCceEEEEceEEecC
Q 023514 221 YAVCASVESQIYSQCNIYEAG 241 (281)
Q Consensus 221 ~~i~~~~~a~v~~e~N~F~~g 241 (281)
+.-........+.|-+-.-+|
T Consensus 471 w~~~~~~~t~~y~Ey~n~GpG 491 (538)
T PLN03043 471 WNGTVGLDTIYYGEFDNYGPG 491 (538)
T ss_pred CCCCCCcCceEEEEecccCCC
Confidence 222223344556675555554
No 58
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=96.66 E-value=0.028 Score=56.92 Aligned_cols=152 Identities=16% Similarity=0.320 Sum_probs=91.3
Q ss_pred CCCCCh---hHHHHhhcC------CCeEEEEEeeeEEEecceeEec---CceeEEeeccceEEe-cC-----c-------
Q 023514 42 SDDGPG---SLREGCRRR------EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-GK-----G------- 96 (281)
Q Consensus 42 ~dsg~G---SLr~al~~~------~pr~Ivf~vsG~I~l~~~l~v~---sn~TI~G~G~g~~I~-G~-----g------- 96 (281)
+.+|.| +.++||++. ..|++|+=..|+++ +.+.|. +|+|+.|.|.+-|+. +. +
T Consensus 228 a~dGsG~f~TIq~Ai~a~p~~~~~~~r~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TvIt~~~~~~~~~~T~~Sa 305 (539)
T PLN02995 228 AKDGSGHFNTVQAAIDVAGRRKVTSGRFVIYVKRGIYQ--ENINVRLNNDDIMLVGDGMRSTIITGGRSVKGGYTTYNSA 305 (539)
T ss_pred CCCCCCCccCHHHHHHhcccccCCCceEEEEEeCCEeE--EEEEecCCCCcEEEEEcCCCCeEEEeCCccCCCCcccceE
Confidence 445665 789999752 23566665689984 557773 689999998655544 21 1
Q ss_pred -EEEeeeccEEEeeeEEecCCCC-CCCcEEEcCCCceEEEeeeeeecCCCCee-----------------EeeeCCccEE
Q 023514 97 -LRLKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGLI-----------------DITRQSTDIT 157 (281)
Q Consensus 97 -i~i~~a~NVIIrnL~i~~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dg~i-----------------d~~~~s~nVT 157 (281)
+.+ .+++++.|||+|++..+. ..-|+.+.-.+.+..+.+|.|.-..|-++ |+--+....-
T Consensus 306 T~~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~av 384 (539)
T PLN02995 306 TAGI-EGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHSQRQFYRECYIYGTVDFIFGNAAAV 384 (539)
T ss_pred EEEE-ECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhccCCCceEEEeeEEeeccceEecccceE
Confidence 344 389999999999986532 23444443357889999999976555443 3333344556
Q ss_pred EeccEEccCC-----ceeeecCCCCCCCCcceEEEEeceeecCCC
Q 023514 158 VSRCYFTQHD-----KTMLIGADPSHVGDRCIRVTIHHCLFDGTR 197 (281)
Q Consensus 158 IS~~~f~~h~-----k~~liG~~~~~~~d~~~~vT~hhN~f~~~~ 197 (281)
+++|.|.... .+.+--.+... .+...-+.|++|.+....
T Consensus 385 f~~C~i~~~~~~~~~~~~iTA~~r~~-~~~~~G~vf~~c~i~~~~ 428 (539)
T PLN02995 385 FQNCIILPRRPLKGQANVITAQGRAD-PFQNTGISIHNSRILPAP 428 (539)
T ss_pred EeccEEEEecCCCCCcceEecCCCCC-CCCCceEEEEeeEEecCC
Confidence 6777765431 11111111000 112245788998886543
No 59
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=96.66 E-value=0.29 Score=50.04 Aligned_cols=195 Identities=14% Similarity=0.350 Sum_probs=111.9
Q ss_pred CCCCCh---hHHHHhhcC-------CCeEEEEEeeeEEEecceeEec---CceeEEeeccceEEe-cC------------
Q 023514 42 SDDGPG---SLREGCRRR-------EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-GK------------ 95 (281)
Q Consensus 42 ~dsg~G---SLr~al~~~-------~pr~Ivf~vsG~I~l~~~l~v~---sn~TI~G~G~g~~I~-G~------------ 95 (281)
+.+|.| +.++||++- ..|+||+-..|+++ +.+.|. +|+||.|.|.+-||. +.
T Consensus 255 a~dGsG~f~TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~S 332 (566)
T PLN02713 255 NQNGTGNFTTINDAVAAAPNNTDGSNGYFVIYVTAGVYE--EYVSIPKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNS 332 (566)
T ss_pred CCCCCCCCCCHHHHHHhhhcccCCCCceEEEEEcCcEEE--EEEEecCCCceEEEEecCCCCcEEEcCCcccCCCccccc
Confidence 455655 788899652 12556665789984 667773 689999998654443 21
Q ss_pred -cEEEeeeccEEEeeeEEecCCCC-CCCcEEEcCCCceEEEeeeeeecCCCCee-----------------EeeeCCccE
Q 023514 96 -GLRLKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGLI-----------------DITRQSTDI 156 (281)
Q Consensus 96 -gi~i~~a~NVIIrnL~i~~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dg~i-----------------d~~~~s~nV 156 (281)
.+.+. +++++.|||+|++..+. ..-|+.+.-.+....+.+|.|.-..|-++ |+--+...+
T Consensus 333 aT~~v~-~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~a 411 (566)
T PLN02713 333 ATFAVV-GQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAV 411 (566)
T ss_pred eeEEEE-CCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECCCCEEEEeeEEecccceecccceE
Confidence 14443 89999999999986532 22344443357789999999976555443 433344556
Q ss_pred EEeccEEccCC-----ceeee--cCCCCCCCCcceEEEEeceeecCCCCCCc------------cccCCeEEEEcceEeC
Q 023514 157 TVSRCYFTQHD-----KTMLI--GADPSHVGDRCIRVTIHHCLFDGTRQRHP------------RLRFGKVHLYNNYTRN 217 (281)
Q Consensus 157 TIS~~~f~~h~-----k~~li--G~~~~~~~d~~~~vT~hhN~f~~~~~R~P------------r~r~g~~hv~NN~~~n 217 (281)
-+++|.|.... ++.+- |..+ .+...-+.||+|.+.....-.| --.+.++-+.|.++.+
T Consensus 412 vfq~C~i~~~~~~~~~~~~iTAq~r~~---~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysr~V~~~s~~~~ 488 (566)
T PLN02713 412 VFQNCNLYPRLPMQGQFNTITAQGRTD---PNQNTGTSIQNCTIKAADDLASSNYTVKTYLGRPWKEYSRTVVMQSYIDG 488 (566)
T ss_pred EEeccEEEEecCCCCCcceeeecCCCC---CCCCCEEEEEcCEEecCCcccccccccceeeecCCCCcceEEEEecccCC
Confidence 67788775431 11111 1111 1123468899998865433222 1113456677776654
Q ss_pred ------CcceeEEeccCceEEEEceEEecCC
Q 023514 218 ------WGIYAVCASVESQIYSQCNIYEAGQ 242 (281)
Q Consensus 218 ------~~~~~i~~~~~a~v~~e~N~F~~g~ 242 (281)
|..+.-........+.|-+-.-+|.
T Consensus 489 ~I~p~GW~~w~~~~~~~t~~y~Ey~n~GpGa 519 (566)
T PLN02713 489 LIDPAGWMPWSGDFALSTLYYAEYNNTGPGS 519 (566)
T ss_pred eecccccCCCCCCCCCCceEEEEecccCCCC
Confidence 3322212223445566765555553
No 60
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=96.65 E-value=0.17 Score=51.32 Aligned_cols=187 Identities=17% Similarity=0.345 Sum_probs=108.7
Q ss_pred hhHHHHhhc----CCCeEEEEEeeeEEEecceeEec---CceeEEeeccceEEe-cC-----c--------EEEeeeccE
Q 023514 47 GSLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-GK-----G--------LRLKECEHV 105 (281)
Q Consensus 47 GSLr~al~~----~~pr~Ivf~vsG~I~l~~~l~v~---sn~TI~G~G~g~~I~-G~-----g--------i~i~~a~NV 105 (281)
-++++||++ +..|.||+-..|+++ +.+.|. +|+||.|.|.+-++. +. + +.+ .++++
T Consensus 245 ~TIq~Av~a~p~~~~~r~vI~Vk~GvY~--E~V~I~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~T~~saT~~v-~~~~F 321 (537)
T PLN02506 245 RTITEAINEAPNHSNRRYIIYVKKGVYK--ENIDMKKKKTNIMLVGDGIGQTVVTGNRNFMQGWTTFRTATVAV-SGRGF 321 (537)
T ss_pred cCHHHHHHhchhcCCCcEEEEEeCCeee--EEEeccCCCceEEEEEcCCCCeEEEeCccccCCCCcccceEEEE-EcCCe
Confidence 468889965 234677776789884 556663 689999997654443 21 1 333 48999
Q ss_pred EEeeeEEecCCC---CCCCcEEEcCCCceEEEeeeeeecCCCCe-----------------eEeeeCCccEEEeccEEcc
Q 023514 106 IICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGL-----------------IDITRQSTDITVSRCYFTQ 165 (281)
Q Consensus 106 IIrnL~i~~g~~---~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~-----------------id~~~~s~nVTIS~~~f~~ 165 (281)
+.|||+|++..+ ...-|+.+ .+.++-+.+|.|.-..|-+ +|+--+....-+++|.|..
T Consensus 322 ~a~nit~~Ntag~~~~QAVAl~v--~~D~~~fy~C~~~G~QDTLy~~~~rqyy~~C~I~GtVDFIFG~a~avfq~C~i~~ 399 (537)
T PLN02506 322 IARDITFRNTAGPQNHQAVALRV--DSDQSAFYRCSMEGYQDTLYAHSLRQFYRECEIYGTIDFIFGNGAAVLQNCKIYT 399 (537)
T ss_pred EEEeeEEEeCCCCCCCceEEEEe--cCCcEEEEcceeecccccceecCCceEEEeeEEecccceEccCceeEEeccEEEE
Confidence 999999998653 23344554 5788999999997554443 3433344556777887764
Q ss_pred CC-----ceeee--cCCCCCCCCcceEEEEeceeecCCCCCC----ccccCCeEEEEcceEeC------CcceeEEeccC
Q 023514 166 HD-----KTMLI--GADPSHVGDRCIRVTIHHCLFDGTRQRH----PRLRFGKVHLYNNYTRN------WGIYAVCASVE 228 (281)
Q Consensus 166 h~-----k~~li--G~~~~~~~d~~~~vT~hhN~f~~~~~R~----Pr~r~g~~hv~NN~~~n------~~~~~i~~~~~ 228 (281)
.. ++.+- |..+ .+...-+.||+|.+.... .. |--.+.++-+.|.++.+ |..+.-.....
T Consensus 400 r~~~~~~~~~iTA~~r~~---~~~~~G~vf~~c~i~~~~-~~yLGRPW~~~sr~v~~~t~l~~~I~p~GW~~w~~~~~~~ 475 (537)
T PLN02506 400 RVPLPLQKVTITAQGRKS---PHQSTGFSIQDSYVLATQ-PTYLGRPWKQYSRTVFMNTYMSQLVQPRGWLEWYGNFALG 475 (537)
T ss_pred ccCCCCCCceEEccCCCC---CCCCcEEEEEcCEEccCC-ceEEecCCCCCceEEEEecCCCCeecCcCcCCCCCCCCCC
Confidence 32 12211 2111 112235788888775421 11 22123566777777654 33222122233
Q ss_pred ceEEEEceEEecCC
Q 023514 229 SQIYSQCNIYEAGQ 242 (281)
Q Consensus 229 a~v~~e~N~F~~g~ 242 (281)
...+.|-|-+-+|.
T Consensus 476 t~~y~Ey~n~GpGa 489 (537)
T PLN02506 476 TLWYGEYRNYGPGA 489 (537)
T ss_pred ceEEEEeccccCCC
Confidence 44566766555553
No 61
>PLN02314 pectinesterase
Probab=96.60 E-value=0.032 Score=57.09 Aligned_cols=170 Identities=16% Similarity=0.352 Sum_probs=101.9
Q ss_pred CCCCCh---hHHHHhhc----CCCeEEEEEeeeEEEecceeEec---CceeEEeeccceEEe-cC-----c--------E
Q 023514 42 SDDGPG---SLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-GK-----G--------L 97 (281)
Q Consensus 42 ~dsg~G---SLr~al~~----~~pr~Ivf~vsG~I~l~~~l~v~---sn~TI~G~G~g~~I~-G~-----g--------i 97 (281)
+.+|.| ++++||+. +..|+||+-..|+++ +.+.|. .|+|+.|.|.+-||. +. + +
T Consensus 283 a~dGsg~f~TI~~Av~a~p~~~~~r~vI~ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~t~~saT~ 360 (586)
T PLN02314 283 AKDGSGDVKTINEAVASIPKKSKSRFVIYVKEGTYV--ENVLLDKSKWNVMIYGDGKDKTIISGSLNFVDGTPTFSTATF 360 (586)
T ss_pred CCCCCCCccCHHHHHhhccccCCceEEEEEcCceEE--EEEEecCCCceEEEEecCCCCcEEEecCCcCCCCCccceEEE
Confidence 344554 78899965 234677776789984 567773 689999998654443 21 1 3
Q ss_pred EEeeeccEEEeeeEEecCCCCC-CCcEEEcCCCceEEEeeeeeecCCCCe-----------------eEeeeCCccEEEe
Q 023514 98 RLKECEHVIICNLEFEGGRGHD-VDGIQIKPNSRHIWIDRCSLRDYDDGL-----------------IDITRQSTDITVS 159 (281)
Q Consensus 98 ~i~~a~NVIIrnL~i~~g~~~~-~DaI~i~~~s~nVwIDHcs~s~~~Dg~-----------------id~~~~s~nVTIS 159 (281)
.+ .+++++.|||+|++..+.. .-|+.++-.+....+.+|.|.-..|-+ +|+--+...+-++
T Consensus 361 ~v-~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~~rq~y~~C~I~GtvDFIFG~a~avf~ 439 (586)
T PLN02314 361 AA-AGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQ 439 (586)
T ss_pred EE-EcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchheeCCCCEEEEeeEEEeccceeccCceeeee
Confidence 44 4899999999999875322 234444435788999999997654443 3433344556777
Q ss_pred ccEEccCC-----ceeee--cCCCCCCCCcceEEEEeceeecCCCC-CCccc------cCCeEEEEcceEeC
Q 023514 160 RCYFTQHD-----KTMLI--GADPSHVGDRCIRVTIHHCLFDGTRQ-RHPRL------RFGKVHLYNNYTRN 217 (281)
Q Consensus 160 ~~~f~~h~-----k~~li--G~~~~~~~d~~~~vT~hhN~f~~~~~-R~Pr~------r~g~~hv~NN~~~n 217 (281)
+|.|.... ++..- |..+ .+...-+.||+|.+..... ..|-+ .+.++-+.|.++.+
T Consensus 440 ~c~i~~~~~~~~~~~~iTA~~r~~---~~~~~G~vf~~c~i~~~~~~~~~~yLGRpW~~ysr~v~~~s~i~~ 508 (586)
T PLN02314 440 NCNIQPRQPLPNQFNTITAQGKKD---PNQNTGISIQRCTISAFGNLTAPTYLGRPWKDFSTTVIMQSYIGS 508 (586)
T ss_pred ccEEEEecCCCCCCceEecCCCCC---CCCCCEEEEEeeEEecCCcccccccccCCCCCCceEEEEecccCC
Confidence 88776321 11111 1111 1122457889998866432 11111 13456677777654
No 62
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=96.56 E-value=0.28 Score=50.36 Aligned_cols=197 Identities=17% Similarity=0.356 Sum_probs=111.1
Q ss_pred CCCCCh---hHHHHhhc----CCCeEEEEEeeeEEEecceeEec---CceeEEeeccceEEe-cC-------------cE
Q 023514 42 SDDGPG---SLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-GK-------------GL 97 (281)
Q Consensus 42 ~dsg~G---SLr~al~~----~~pr~Ivf~vsG~I~l~~~l~v~---sn~TI~G~G~g~~I~-G~-------------gi 97 (281)
+.+|.| ++++||++ +..|+||+-..|++.-+ .+.|. +|+||.|.|.+-||. +. .+
T Consensus 277 a~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E~-~v~i~~~k~ni~l~G~g~~~TiIt~~~~~~~~~~t~~saT~ 355 (587)
T PLN02484 277 SKDGNGTFKTISEAIKKAPEHSSRRTIIYVKAGRYEEN-NLKVGRKKTNLMFIGDGKGKTVITGGKSIFDNLTTFHTASF 355 (587)
T ss_pred CCCCCCCcccHHHHHHhccccCCCcEEEEEeCCEEEEE-EEEECCCCceEEEEecCCCCeEEecCCcccCCCcccceEEE
Confidence 344543 68889976 23467777678998431 47774 689999998655544 21 13
Q ss_pred EEeeeccEEEeeeEEecCCCC-CCCcEEEcCCCceEEEeeeeeecCCCCe-----------------eEeeeCCccEEEe
Q 023514 98 RLKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGL-----------------IDITRQSTDITVS 159 (281)
Q Consensus 98 ~i~~a~NVIIrnL~i~~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dg~-----------------id~~~~s~nVTIS 159 (281)
.+ .+++++.|||+|++..+. ..-|+.++-.+.+..+.+|.|.-..|-+ +|+--+....-++
T Consensus 356 ~v-~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq 434 (587)
T PLN02484 356 AA-TGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFIFGNAAVVLQ 434 (587)
T ss_pred EE-EcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCcccccCCCcEEEEecEEEeccceecccceeEEe
Confidence 33 389999999999986532 1233444335678999999997655443 3433344556677
Q ss_pred ccEEccCC-----ceeeecCCCCCCCCcceEEEEeceeecCCCCCC------------ccccCCeEEEEcceEeC-----
Q 023514 160 RCYFTQHD-----KTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRH------------PRLRFGKVHLYNNYTRN----- 217 (281)
Q Consensus 160 ~~~f~~h~-----k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~------------Pr~r~g~~hv~NN~~~n----- 217 (281)
+|.|.... ++.+--.+... .+...-+.||+|.+.....-. |--.+.++-+.+.++.+
T Consensus 435 ~C~i~~~~~~~~~~~~ITAq~r~~-~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysrvV~~~s~i~~~I~p~ 513 (587)
T PLN02484 435 NCSIYARKPMAQQKNTITAQNRKD-PNQNTGISIHACRILAASDLAASKGSFPTYLGRPWKLYSRTVYMMSYMGDHIHPR 513 (587)
T ss_pred ccEEEEecCCCCCceEEEecCCCC-CCCCcEEEEEeeEEecCCccccccCccceeccCCCCCCceEEEEecccCCeEccc
Confidence 88776421 12222111100 112246889999886543211 11113456666766643
Q ss_pred -CcceeEEeccCceEEEEceEEecC
Q 023514 218 -WGIYAVCASVESQIYSQCNIYEAG 241 (281)
Q Consensus 218 -~~~~~i~~~~~a~v~~e~N~F~~g 241 (281)
|..+.-......-.+.|-+-+-+|
T Consensus 514 GW~~W~~~~~~~t~~y~Ey~n~GpG 538 (587)
T PLN02484 514 GWLEWNTTFALDTLYYGEYMNYGPG 538 (587)
T ss_pred ccCCCCCCCCCCceEEEEeccccCC
Confidence 332222222344556666655555
No 63
>PLN02916 pectinesterase family protein
Probab=96.52 E-value=0.44 Score=47.98 Aligned_cols=190 Identities=13% Similarity=0.273 Sum_probs=106.8
Q ss_pred hhHHHHhhcC-------CCeEEEEEeeeEEEecceeEec---CceeEEeeccceEEe-c-------C------cEEEeee
Q 023514 47 GSLREGCRRR-------EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-G-------K------GLRLKEC 102 (281)
Q Consensus 47 GSLr~al~~~-------~pr~Ivf~vsG~I~l~~~l~v~---sn~TI~G~G~g~~I~-G-------~------gi~i~~a 102 (281)
-++++||++- ..|++|+=..|+++ +.+.|. +|+||.|.|.+-|+. + . .+.+ .+
T Consensus 200 ~TIq~AI~a~P~~~~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v-~~ 276 (502)
T PLN02916 200 RTINQALAALSRMGKSRTNRVIIYVKAGVYN--EKVEIDRHMKNVMFVGDGMDKTIITNNRNVPDGSTTYSSATFGV-SG 276 (502)
T ss_pred cCHHHHHHhcccccCCCCceEEEEEeCceee--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcceeeEEEEE-EC
Confidence 3688899652 24666666789884 667774 689999997654544 1 1 1344 38
Q ss_pred ccEEEeeeEEecCCC---CCCCcEEEcCCCceEEEeeeeeecCCCCee-----------------EeeeCCccEEEeccE
Q 023514 103 EHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLI-----------------DITRQSTDITVSRCY 162 (281)
Q Consensus 103 ~NVIIrnL~i~~g~~---~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~i-----------------d~~~~s~nVTIS~~~ 162 (281)
++++.|||+|++..+ ...-|+.+ .+....+.+|.|.-..|-++ |+--+....-+++|.
T Consensus 277 ~~F~A~nitf~Ntag~~~~QAVALrv--~~D~a~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avFq~C~ 354 (502)
T PLN02916 277 DGFWARDITFENTAGPHKHQAVALRV--SSDLSVFYRCSFKGYQDTLFVHSLRQFYRDCHIYGTIDFIFGDAAVVFQNCD 354 (502)
T ss_pred CCEEEEeeEEEeCCCCCCCceEEEEE--cCCcEEEEeeeEeccCceeEeCCCCEEEEecEEecccceeccCceEEEecCE
Confidence 999999999998653 22344454 46789999999976555443 433344456667777
Q ss_pred EccCC-----ceeeecCCCCCCCCcceEEEEeceeecCCCC--------CC----ccccCCeEEEEcceEeC------Cc
Q 023514 163 FTQHD-----KTMLIGADPSHVGDRCIRVTIHHCLFDGTRQ--------RH----PRLRFGKVHLYNNYTRN------WG 219 (281)
Q Consensus 163 f~~h~-----k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~--------R~----Pr~r~g~~hv~NN~~~n------~~ 219 (281)
|.... .+.+--.+... .....-+.||+|.+..... +. |--.+.++-+.|.++.+ |.
T Consensus 355 I~~~~~~~~~~g~ITAq~r~~-~~~~tGfvf~~C~it~~~~~~~~~g~~~~yLGRPW~~ysrvVf~~t~~~~~I~p~GW~ 433 (502)
T PLN02916 355 IFVRRPMDHQGNMITAQGRDD-PHENTGISIQHSRVRASPEFEAVKGRFKSFLGRPWKKYSRTVFLKTDLDGLIDPRGWR 433 (502)
T ss_pred EEEecCCCCCcceEEecCCCC-CCCCcEEEEEeeEEecCccccccccccceEeecCCCCCceEEEEecccCCeEcCcccC
Confidence 65321 12222111100 1122357889988755321 11 11113456666666643 33
Q ss_pred ceeEEeccCceEEEEceEEecCC
Q 023514 220 IYAVCASVESQIYSQCNIYEAGQ 242 (281)
Q Consensus 220 ~~~i~~~~~a~v~~e~N~F~~g~ 242 (281)
.+.-......-.+.|-+-.-+|.
T Consensus 434 ~W~~~~~~~t~~y~EY~n~GpGA 456 (502)
T PLN02916 434 EWSGSYALSTLYYGEYMNTGAGA 456 (502)
T ss_pred CCCCCCCCCeeEEEEeccccCCC
Confidence 22222223444566655555553
No 64
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=96.16 E-value=0.23 Score=48.88 Aligned_cols=97 Identities=13% Similarity=0.190 Sum_probs=65.7
Q ss_pred hhHHHHhhcC-----CCeEEEEEeeeEEEecceeEe---cCceeEEeecc---ceEEecC--------------------
Q 023514 47 GSLREGCRRR-----EPLWIVFEVSGTIHLSSYLSV---SSYKTIDGRGQ---RIKLTGK-------------------- 95 (281)
Q Consensus 47 GSLr~al~~~-----~pr~Ivf~vsG~I~l~~~l~v---~sn~TI~G~G~---g~~I~G~-------------------- 95 (281)
-+.++||++. ..|++|+=..|+.+ +.+.| .+++||.|.|. ...|...
T Consensus 95 ~TIQaAIdAa~~~~~~~r~~I~Ik~GvY~--EkV~Ip~~kp~ItL~G~G~~~~~TvIt~~~~~~~~~~~~~~~~~~~g~~ 172 (422)
T PRK10531 95 TTVQAAVDAAIAKRTNKRQYIAVMPGTYQ--GTVYVPAAAPPITLYGTGEKPIDVKIGLALDGEMSPADWRANVNPRGKY 172 (422)
T ss_pred cCHHHHHhhccccCCCceEEEEEeCceeE--EEEEeCCCCceEEEEecCCCCCceEEEecCccccccccccccccccccc
Confidence 3788999752 23566665679884 66777 37899999763 2344321
Q ss_pred -------------------c--------EEEeeeccEEEeeeEEecCCCC-------CCCcEEEcCCCceEEEeeeeeec
Q 023514 96 -------------------G--------LRLKECEHVIICNLEFEGGRGH-------DVDGIQIKPNSRHIWIDRCSLRD 141 (281)
Q Consensus 96 -------------------g--------i~i~~a~NVIIrnL~i~~g~~~-------~~DaI~i~~~s~nVwIDHcs~s~ 141 (281)
+ +.+ .+++++.+||+|++.... ..-|+.+ .+.++.+.+|.|.-
T Consensus 173 ~~~~p~~y~~d~~~~~~~~~~gT~~SATv~v-~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv--~GDra~fy~C~flG 249 (422)
T PRK10531 173 MPGKPAWYMYDSCQSKRAATIGTLCSAVFWS-QNNGLQLQNLTIENTLGDSVDAGNHPAVALRT--DGDKVQIENVNILG 249 (422)
T ss_pred cccccccccccccccccCCCcCceeeEEEEE-ECCCEEEEeeEEEeCCCCCCCCCcceeEEEEE--cCCcEEEEeeEEec
Confidence 0 233 479999999999986431 2234444 46789999999988
Q ss_pred CCCCeeE
Q 023514 142 YDDGLID 148 (281)
Q Consensus 142 ~~Dg~id 148 (281)
..|-++.
T Consensus 250 ~QDTLy~ 256 (422)
T PRK10531 250 RQDTFFV 256 (422)
T ss_pred ccceeee
Confidence 7777764
No 65
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=96.04 E-value=0.081 Score=46.75 Aligned_cols=114 Identities=19% Similarity=0.226 Sum_probs=71.3
Q ss_pred ecCcEEEeeeccEEEeeeEEecCCC----CCCCc-EEEcCCCceEEEeeeeeecCCCCeeEe------eeCCccEEEecc
Q 023514 93 TGKGLRLKECEHVIICNLEFEGGRG----HDVDG-IQIKPNSRHIWIDRCSLRDYDDGLIDI------TRQSTDITVSRC 161 (281)
Q Consensus 93 ~G~gi~i~~a~NVIIrnL~i~~g~~----~~~Da-I~i~~~s~nVwIDHcs~s~~~Dg~id~------~~~s~nVTIS~~ 161 (281)
.+..|.+.+++||.|.|.+|..+.. ...|+ +.+..++++|=|-+|-|......++.. ......||+-+|
T Consensus 74 ~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN 153 (200)
T PF00544_consen 74 DGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFHHN 153 (200)
T ss_dssp S--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTTEEEEEES-
T ss_pred CCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCCceEEEEeE
Confidence 4557999999999999999998721 11344 566557889999999997643333321 112258999999
Q ss_pred EEccCCc-eeeecCCCCCCCCcceEEEEeceeecCCCCCCccccC-CeEEEEcceE
Q 023514 162 YFTQHDK-TMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRF-GKVHLYNNYT 215 (281)
Q Consensus 162 ~f~~h~k-~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~r~-g~~hv~NN~~ 215 (281)
+|.+... .=++.. -.+-+.+|+|.+.....=..+. +++-+.||||
T Consensus 154 ~f~~~~~R~P~~r~---------G~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 154 YFANTNSRNPRVRF---------GYVHVYNNYYYNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp EEEEEEE-TTEECS---------CEEEEES-EEEEECSESEEEETTEEEEEES-EE
T ss_pred EECchhhCCCcccc---------cEEEEEEeeeECCCCEEEEccCCeEEEEECcCC
Confidence 9975321 002211 1678899999887777655554 4788999987
No 66
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=96.02 E-value=0.037 Score=47.99 Aligned_cols=102 Identities=25% Similarity=0.424 Sum_probs=57.7
Q ss_pred ceeEEeeccceEEe--cCcEEEeeeccEEEeeeEEecCCCCCCCcEE-------------------EcCCCceEEEeeee
Q 023514 80 YKTIDGRGQRIKLT--GKGLRLKECEHVIICNLEFEGGRGHDVDGIQ-------------------IKPNSRHIWIDRCS 138 (281)
Q Consensus 80 n~TI~G~G~g~~I~--G~gi~i~~a~NVIIrnL~i~~g~~~~~DaI~-------------------i~~~s~nVwIDHcs 138 (281)
+++|.|.+.. .. ..++.+..+.++.|+|++++... .+++. ++.++.+++++.|.
T Consensus 98 nl~i~~~~~~--~~~~~~~i~~~~~~~~~i~nv~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (225)
T PF12708_consen 98 NLTIDGNGID--PNNNNNGIRFNSSQNVSISNVRIENSG---GDGIYFNTGTDYRIIGSTHVSGIFIDNGSNNVIVNNCI 172 (225)
T ss_dssp EEEEEETCGC--E-SCEEEEEETTEEEEEEEEEEEES-S---S-SEEEECCEECEEECCEEEEEEEEESCEEEEEEECEE
T ss_pred eeEEEccccc--CCCCceEEEEEeCCeEEEEeEEEEccC---ccEEEEEccccCcEeecccceeeeeccceeEEEECCcc
Confidence 5777776322 21 34577777899999999998752 22222 22122234445555
Q ss_pred eecCCCCeeEeeeCCccEEEeccEEcc-CCceeeecCCCCCCCCcceEEEEeceeecCCC
Q 023514 139 LRDYDDGLIDITRQSTDITVSRCYFTQ-HDKTMLIGADPSHVGDRCIRVTIHHCLFDGTR 197 (281)
Q Consensus 139 ~s~~~Dg~id~~~~s~nVTIS~~~f~~-h~k~~liG~~~~~~~d~~~~vT~hhN~f~~~~ 197 (281)
+....++ + ..+.+++++++|.|.. ...+..+-... ++++.+|.|.+|.
T Consensus 173 ~~~~~~g-~--~~~~~~~~i~n~~~~~~~~~gi~i~~~~--------~~~i~n~~i~~~~ 221 (225)
T PF12708_consen 173 FNGGDNG-I--ILGNNNITISNNTFEGNCGNGINIEGGS--------NIIISNNTIENCD 221 (225)
T ss_dssp EESSSCS-E--ECEEEEEEEECEEEESSSSESEEEEECS--------EEEEEEEEEESSS
T ss_pred ccCCCce-e--EeecceEEEEeEEECCccceeEEEECCe--------EEEEEeEEEECCc
Confidence 5556666 2 1223678888888876 44444442221 4667777777664
No 67
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=96.01 E-value=0.35 Score=46.26 Aligned_cols=93 Identities=17% Similarity=0.096 Sum_probs=67.9
Q ss_pred eeEecCceeEEeeccceEEecC--cEEEeeeccEEEeeeEEecCCC----CCCCcEEEcCCCceEEEeeeeeecCCCCee
Q 023514 74 YLSVSSYKTIDGRGQRIKLTGK--GLRLKECEHVIICNLEFEGGRG----HDVDGIQIKPNSRHIWIDRCSLRDYDDGLI 147 (281)
Q Consensus 74 ~l~v~sn~TI~G~G~g~~I~G~--gi~i~~a~NVIIrnL~i~~g~~----~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~i 147 (281)
.|.+....|-++.- ...|.+. ||.+.++.++.|+.-+|.+... ..++||.+. ++..+-|--++++...|++.
T Consensus 99 gI~v~~~at~A~Vr-~N~l~~n~~Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vy-Na~~a~V~~ndisy~rDgIy 176 (408)
T COG3420 99 GIFVGRTATGAVVR-HNDLIGNSFGIYLHGSADVRIEGNTIQGLADLRVAERGNGIYVY-NAPGALVVGNDISYGRDGIY 176 (408)
T ss_pred eEEeccCcccceEE-cccccccceEEEEeccCceEEEeeEEeeccccchhhccCceEEE-cCCCcEEEcCccccccceEE
Confidence 34555555555542 1234443 5788899999999999987652 457999997 88899999999999999965
Q ss_pred EeeeCCccEEEeccEEccCCcee
Q 023514 148 DITRQSTDITVSRCYFTQHDKTM 170 (281)
Q Consensus 148 d~~~~s~nVTIS~~~f~~h~k~~ 170 (281)
.- -+..-+++.|.|++..++.
T Consensus 177 ~~--~S~~~~~~gnr~~~~Rygv 197 (408)
T COG3420 177 SD--TSQHNVFKGNRFRDLRYGV 197 (408)
T ss_pred Ec--ccccceecccchhheeeeE
Confidence 43 3667788898888766543
No 68
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=95.85 E-value=0.2 Score=47.18 Aligned_cols=141 Identities=14% Similarity=0.113 Sum_probs=84.1
Q ss_pred EEEeeeccEEEeeeEEecCCCCCCCcEEEcCCCceEEEeeeeeecCC-----CCeeEeeeCCccEEEeccEEccCCceee
Q 023514 97 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYD-----DGLIDITRQSTDITVSRCYFTQHDKTML 171 (281)
Q Consensus 97 i~i~~a~NVIIrnL~i~~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~-----Dg~id~~~~s~nVTIS~~~f~~h~k~~l 171 (281)
+.|+..+|+.|-.+--.. .--+-++.|. .+.||+|...+|.... +..|.+..++.+|=|-+|.|..+....-
T Consensus 95 ~~iki~sNkTivG~g~~a--~~~g~gl~i~-~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~ 171 (345)
T COG3866 95 ITIKIGSNKTIVGSGADA--TLVGGGLKIR-DAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNAS 171 (345)
T ss_pred EEEeeccccEEEeecccc--EEEeceEEEE-eCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEecccccccc
Confidence 566656665544321110 0114568887 6899999999998655 2337776778899999999987655421
Q ss_pred ecCCCCC--CCCcceEEEEeceeecCCCC---------CCccccCCeEEEEcceEeCCcceeEEeccCceEEEEceEEec
Q 023514 172 IGADPSH--VGDRCIRVTIHHCLFDGTRQ---------RHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEA 240 (281)
Q Consensus 172 iG~~~~~--~~d~~~~vT~hhN~f~~~~~---------R~Pr~r~g~~hv~NN~~~n~~~~~i~~~~~a~v~~e~N~F~~ 240 (281)
--+.|.. ......-||+-.|.|+++.- .++.-..-++.+-+|||.|.-.++=..+- ..+.+-+|||+.
T Consensus 172 ~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRf-G~vHvyNNYy~~ 250 (345)
T COG3866 172 GSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRF-GMVHVYNNYYEG 250 (345)
T ss_pred ccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEeccccccccccCCceEe-eEEEEecccccc
Confidence 1111211 11223479999999976432 22321111467788999886544333222 357788999984
Q ss_pred C
Q 023514 241 G 241 (281)
Q Consensus 241 g 241 (281)
-
T Consensus 251 ~ 251 (345)
T COG3866 251 N 251 (345)
T ss_pred C
Confidence 3
No 69
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=94.35 E-value=0.56 Score=41.26 Aligned_cols=102 Identities=22% Similarity=0.161 Sum_probs=64.2
Q ss_pred ccEEEeccEEccCCc--eeeecCCCCCCCCcceEEEEeceeecCCCCCCccc--cCC-------eEEEEcceEeCCccee
Q 023514 154 TDITVSRCYFTQHDK--TMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRL--RFG-------KVHLYNNYTRNWGIYA 222 (281)
Q Consensus 154 ~nVTIS~~~f~~h~k--~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~--r~g-------~~hv~NN~~~n~~~~~ 222 (281)
++|.|=+|.+.+-.- .-|+|...+...+...+|-+|||.|-.+.. +|.. ..| ...+.||+|+..-..+
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tGt-n~~~~wvGGIv~sGF~ntlIENNVfDG~y~aa 80 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTGT-NPNIDWVGGIVTSGFYNTLIENNVFDGVYHAA 80 (198)
T ss_pred CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeecCCc-CCCCceeeeEEeccccccEEEeeeecccccce
Confidence 467788888876543 345687655555555689999999976543 4444 333 2478999998764444
Q ss_pred EE----------eccCceEEEEceEEecCCcceeeeeccccccccceeEEE
Q 023514 223 VC----------ASVESQIYSQCNIYEAGQKKRTFEYYTEKVKFTFFYLIC 263 (281)
Q Consensus 223 i~----------~~~~a~v~~e~N~F~~g~~~~~~~~~~~~~~~~~~~~~~ 263 (281)
+. .+.+-...+.+|.+.+..+. .+++...+|+|+
T Consensus 81 i~~~y~~~~~sp~gsgyttivRNNII~NT~~r-------~~~~~GtGYgv~ 124 (198)
T PF08480_consen 81 IAQMYPDYDLSPKGSGYTTIVRNNIIVNTRKR-------KSSPAGTGYGVI 124 (198)
T ss_pred EEEEecccccCCCCCceEEEEEcceEeeeeec-------ccCCCCceeEEE
Confidence 32 12344667778888876543 344445556654
No 70
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=93.39 E-value=0.33 Score=47.79 Aligned_cols=113 Identities=17% Similarity=0.260 Sum_probs=56.8
Q ss_pred CCcEEEcC-----CCceEEEeeeeeec--CCCCeeEeeeCCccEEEeccEEccCCceeeecCCCCCCCCcceEEEEecee
Q 023514 120 VDGIQIKP-----NSRHIWIDRCSLRD--YDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCL 192 (281)
Q Consensus 120 ~DaI~i~~-----~s~nVwIDHcs~s~--~~Dg~id~~~~s~nVTIS~~~f~~h~k~~liG~~~~~~~d~~~~vT~hhN~ 192 (281)
+-+|+|-. ...+..|+|+=|.. +.-|+|++| |..-|+++|.|.+..-+..+=++. +-++..|+
T Consensus 184 gEtIRiG~S~~S~~~s~t~Ve~NlFe~cdGE~EIISvK--S~~N~ir~Ntf~es~G~ltlRHGn--------~n~V~gN~ 253 (425)
T PF14592_consen 184 GETIRIGTSHSSMSDSNTTVENNLFERCDGEVEIISVK--SSDNTIRNNTFRESQGSLTLRHGN--------RNTVEGNV 253 (425)
T ss_dssp --SEEE-SSTT-B-----EEES-EEEEE-SSSEEEEEE--SBT-EEES-EEES-SSEEEEEE-S--------S-EEES-E
T ss_pred ceeEEEecccccccccceeeecchhhhcCCceeEEEee--cCCceEeccEEEeccceEEEecCC--------CceEeccE
Confidence 45666631 12356666766664 456777775 566788899888765554443332 35889999
Q ss_pred ecCCCCC--CccccC-CeEE-EEcceEeCCcceeE----E---eccC---------ceEEEEceEEecCC
Q 023514 193 FDGTRQR--HPRLRF-GKVH-LYNNYTRNWGIYAV----C---ASVE---------SQIYSQCNIYEAGQ 242 (281)
Q Consensus 193 f~~~~~R--~Pr~r~-g~~h-v~NN~~~n~~~~~i----~---~~~~---------a~v~~e~N~F~~g~ 242 (281)
|-.+..+ .+-+|- +.-| ++|||+++.....+ . ...+ ..+.+++|-|.+..
T Consensus 254 FiGng~~~~tGGIRIi~~~H~I~nNY~~gl~g~~~~~~~~v~ng~p~s~ln~y~qv~nv~I~~NT~In~~ 323 (425)
T PF14592_consen 254 FIGNGVKEGTGGIRIIGEGHTIYNNYFEGLTGTRFRGALAVMNGVPNSPLNRYDQVKNVLIANNTFINCK 323 (425)
T ss_dssp EEE-SSSS-B--EEE-SBS-EEES-EEEESSB-TTTTSEE-EEE--BSTTSTT---BSEEEES-EEES-S
T ss_pred EecCCCcCCCCceEEecCCcEEEcceeeccccceeecceeeccCCCCCCcccccccceeEEecceEEccC
Confidence 9776643 456663 4444 89999998643211 1 1111 24888999999875
No 71
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=92.43 E-value=0.76 Score=46.68 Aligned_cols=133 Identities=20% Similarity=0.301 Sum_probs=85.4
Q ss_pred CCCeEEEEEeeeEEEecc------e---eEe--cCceeEEeeccceEEe------cCcEEEeeeccEEEeeeEEecCCCC
Q 023514 56 REPLWIVFEVSGTIHLSS------Y---LSV--SSYKTIDGRGQRIKLT------GKGLRLKECEHVIICNLEFEGGRGH 118 (281)
Q Consensus 56 ~~pr~Ivf~vsG~I~l~~------~---l~v--~sn~TI~G~G~g~~I~------G~gi~i~~a~NVIIrnL~i~~g~~~ 118 (281)
..|+.+.|.-.....+.. + +.. .+++|+.+. +|. -.||.+..++||.|.+.||..+
T Consensus 236 ~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl----~I~~~~~~NtDG~d~~sc~NvlI~~~~fdtg--- 308 (542)
T COG5434 236 VRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNL----TIDANRFDNTDGFDPGSCSNVLIEGCRFDTG--- 308 (542)
T ss_pred cCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecce----EEECCCCCCCCccccccceeEEEeccEEecC---
Confidence 467888776444443321 1 111 245666554 232 3478998999999999999985
Q ss_pred CCCcEEEc-----------CCCceEEEeeeeeecCCCCeeEee---eCCccEEEeccEEccCCceeeecCCCCCCCCcce
Q 023514 119 DVDGIQIK-----------PNSRHIWIDRCSLRDYDDGLIDIT---RQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCI 184 (281)
Q Consensus 119 ~~DaI~i~-----------~~s~nVwIDHcs~s~~~Dg~id~~---~~s~nVTIS~~~f~~h~k~~liG~~~~~~~d~~~ 184 (281)
.|+|.+. ..++++||-||-|+.+.-+.+... .+..+|++.+|.|.+...+.-|.+.+... ...-
T Consensus 309 -DD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~ggv~ni~ved~~~~~~d~GLRikt~~~~g-G~v~ 386 (542)
T COG5434 309 -DDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGGVQNITVEDCVMDNTDRGLRIKTNDGRG-GGVR 386 (542)
T ss_pred -CceEEeecccCCcccccccccccEEEecceecccccceEeeeecCCceeEEEEEeeeeccCcceeeeeeecccc-eeEE
Confidence 3555543 135789999999998877765432 34679999999999866665554443221 1224
Q ss_pred EEEEeceeecCCC
Q 023514 185 RVTIHHCLFDGTR 197 (281)
Q Consensus 185 ~vT~hhN~f~~~~ 197 (281)
+|+|+.+...+..
T Consensus 387 nI~~~~~~~~nv~ 399 (542)
T COG5434 387 NIVFEDNKMRNVK 399 (542)
T ss_pred EEEEecccccCcc
Confidence 7888777666553
No 72
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=90.64 E-value=5.8 Score=38.03 Aligned_cols=146 Identities=11% Similarity=0.146 Sum_probs=92.3
Q ss_pred hhHHHHhhc-----CCCeEEEEEeeeEEEecceeEec-Cc--eeEEeeccc--eEEe-----c---C--cEE--------
Q 023514 47 GSLREGCRR-----REPLWIVFEVSGTIHLSSYLSVS-SY--KTIDGRGQR--IKLT-----G---K--GLR-------- 98 (281)
Q Consensus 47 GSLr~al~~-----~~pr~Ivf~vsG~I~l~~~l~v~-sn--~TI~G~G~g--~~I~-----G---~--gi~-------- 98 (281)
-|.++||++ ...|.+++-..|++ ++.+.|. ++ +|+.|.+.. -+.. + . +..
T Consensus 95 ~TIQaAvdaA~~~~~~kr~yI~vk~GvY--~e~v~Vp~~~~~ITLyGed~~~~~tvIg~n~aagp~np~~~m~n~c~ss~ 172 (405)
T COG4677 95 TTIQAAVDAAIIKRTNKRQYIAVKAGVY--QETVYVPAAPGGITLYGEDEKPIDTVIGLNLAAGPGNPAGYMYNSCQSSR 172 (405)
T ss_pred HHHHHHHhhhcccCCCceEEEEEcccee--ceeEEecCCCCceeEEecCCCCcceEEEEecCCCCCCccceeecccccch
Confidence 578888865 23577777778998 4667775 44 899998654 1222 1 1 110
Q ss_pred ------------EeeeccEEEeeeEEecCCC--CC---CCcEEEcCCCceEEEeeeeeecCCCCeeEeeeCCc-------
Q 023514 99 ------------LKECEHVIICNLEFEGGRG--HD---VDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQST------- 154 (281)
Q Consensus 99 ------------i~~a~NVIIrnL~i~~g~~--~~---~DaI~i~~~s~nVwIDHcs~s~~~Dg~id~~~~s~------- 154 (281)
+...++.+.+||++..... .. --++.+...+..+.+..|.+.-..|-++....+..
T Consensus 173 ~~tigt~~Sat~~v~~ndf~~~nlT~en~~gd~~lagn~~AVaL~~dgDka~frnv~llg~QdTlFv~~~~~~~~~~tn~ 252 (405)
T COG4677 173 SATIGTLCSATFWVQNNDFQLQNLTIENTLGDGVLAGNHPAVALATDGDKAIFRNVNLLGNQDTLFVGNSGVQNRLETNR 252 (405)
T ss_pred hhhhhhhhhhhheeecCCcccccceeecccCCccccCCceeEEEEecCCceeeeeeeEeeccceEEecCCCCccccccCc
Confidence 1125789999999987432 11 13555544678899999999888887664432111
Q ss_pred --cEEEeccEEccCCceeeecCCCCCCCCcceEEEEeceeecCCCCCCcccc
Q 023514 155 --DITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLR 204 (281)
Q Consensus 155 --nVTIS~~~f~~h~k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~r 204 (281)
.--+-+|++++| --+++|+. .+-||+|-|.-+..|.|...
T Consensus 253 ~~R~yftNsyI~Gd-vDfIfGsg---------taVFd~c~i~~~d~r~~~~g 294 (405)
T COG4677 253 QPRTYFTNSYIEGD-VDFIFGSG---------TAVFDNCEIQVVDSRTQQEG 294 (405)
T ss_pred chhhheecceeccc-ceEEeccc---------eEEeccceEEEeccCCCcce
Confidence 112336666654 23455665 46789998888888887654
No 73
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=84.08 E-value=3.1 Score=38.65 Aligned_cols=64 Identities=22% Similarity=0.414 Sum_probs=46.5
Q ss_pred eeccEEEeeeEEecCCCCCCCcEEEcCCCceEEEeeeeeecCCCCeeEeeeCCccEEEeccEEccCCceeeecCCC
Q 023514 101 ECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADP 176 (281)
Q Consensus 101 ~a~NVIIrnL~i~~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~id~~~~s~nVTIS~~~f~~h~k~~liG~~~ 176 (281)
+++|..|.|.+|..|.. + +. .++||-+++|.|.|-+= .++ ++++.|.+|.|..-..+.+|.+.+
T Consensus 17 ~~~d~~l~~~~f~dGES----~--LK-es~nI~~~~~~F~~KYP----~Wh-~~~~~i~~~~f~~~aRa~iWYs~~ 80 (277)
T PF12541_consen 17 GSHDLRLENCTFADGES----P--LK-ESRNIELKNCIFKWKYP----LWH-SDNIKIENCYFTEMARAAIWYSNN 80 (277)
T ss_pred ccCCCEEEeeEEeCCCc----c--cc-cccceEEECCEEeeECc----eEE-ECCeEEEeeEEeecceeeeeEeCC
Confidence 58899999999997642 2 33 67899999999987431 222 467778888888777777777654
No 74
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=83.49 E-value=22 Score=33.16 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=21.4
Q ss_pred EEEEeceeecCCCCCCccccCCeEEEEcceEeCC
Q 023514 185 RVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNW 218 (281)
Q Consensus 185 ~vT~hhN~f~~~~~R~Pr~r~g~~hv~NN~~~n~ 218 (281)
++|+-+|..... .|.+---.+.+.|.-+.+.
T Consensus 195 NltliNC~I~g~---QpLCY~~~L~l~nC~~~~t 225 (277)
T PF12541_consen 195 NLTLINCTIEGT---QPLCYCDNLVLENCTMIDT 225 (277)
T ss_pred CeEEEEeEEecc---CccEeecceEEeCcEeecc
Confidence 688888877653 5666555677888877753
No 75
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=72.89 E-value=23 Score=35.87 Aligned_cols=119 Identities=17% Similarity=0.384 Sum_probs=66.8
Q ss_pred CcEEEeeeccEEEeeeEEecCCC---CCCCcEEEcCCCceEEEeeeeeecCCCCe-----------------eEeeeCCc
Q 023514 95 KGLRLKECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGL-----------------IDITRQST 154 (281)
Q Consensus 95 ~gi~i~~a~NVIIrnL~i~~g~~---~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~-----------------id~~~~s~ 154 (281)
..+.+. +++++.|||+|++..+ ...-|+.+ .+.++-+.+|.|.-..|-+ +|+--+..
T Consensus 263 aT~~v~-~~~F~a~nitf~Ntag~~~~QAvAl~v--~~D~~~fy~c~~~G~QDTLy~~~~rqyy~~C~I~G~vDFIFG~a 339 (497)
T PLN02698 263 ATFTIT-GDGFIARDIGFKNAAGPKGEQAIALSI--TSDHSVLYRCSIAGYQDTLYAAALRQFYRECDIYGTIDFIFGNA 339 (497)
T ss_pred eeEEEE-CCCeEEEeeEEEECCCCCCCceEEEEe--cCCcEEEEcceeecccchheeCCCcEEEEeeEEEeccceEeccc
Confidence 346664 8999999999998653 22344444 4678999999997554443 34333444
Q ss_pred cEEEeccEEccCCc-----eeeecCCCCCCCCcceEEEEeceeecCCCCCCc------------cccCCeEEEEcceEeC
Q 023514 155 DITVSRCYFTQHDK-----TMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHP------------RLRFGKVHLYNNYTRN 217 (281)
Q Consensus 155 nVTIS~~~f~~h~k-----~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~P------------r~r~g~~hv~NN~~~n 217 (281)
..-+++|.|..... +...-.+... .+...-+.||+|.+.....=.| --.+.++-+.|.++.+
T Consensus 340 ~avf~~C~i~~~~~~~~~~~~iTAq~r~~-~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysr~vf~~s~l~~ 418 (497)
T PLN02698 340 AAVFQNCYLFLRRPHGKSYNVILANGRSD-PGQNTGFSLQSCRIRTSSDFSPVKHSYSSYLGRPWKKYSRAIVMESYIDD 418 (497)
T ss_pred ceeecccEEEEecCCCCCceEEEecCCCC-CCCCceEEEEeeEEecCCcccccccccceeccCCCCCCceEEEEecccCC
Confidence 55677777753211 1111111100 1122458889998865432111 1112466677777543
No 76
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=69.12 E-value=11 Score=24.55 Aligned_cols=39 Identities=21% Similarity=0.225 Sum_probs=19.5
Q ss_pred EEEcCCCceEEEeeeeeecCCCCeeEeeeCCccEEEeccEEc
Q 023514 123 IQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFT 164 (281)
Q Consensus 123 I~i~~~s~nVwIDHcs~s~~~Dg~id~~~~s~nVTIS~~~f~ 164 (281)
|.+. .+++..|..+.++...|| +.+. .+.+-+|..|.+.
T Consensus 2 I~l~-~s~~~~i~~N~i~~~~~G-I~~~-~s~~n~i~~N~~~ 40 (44)
T TIGR03804 2 IYLE-SSSNNTLENNTASNNSYG-IYLT-DSSNNTLSNNTAS 40 (44)
T ss_pred EEEE-ecCCCEEECcEEeCCCCE-EEEE-eCCCCEeECCEEE
Confidence 4444 444455666666666664 3332 2345555555544
No 77
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=67.45 E-value=61 Score=29.22 Aligned_cols=97 Identities=18% Similarity=0.210 Sum_probs=50.0
Q ss_pred eeEEEecceeEecCceeEEeeccceEEec---------------CcEEEeeeccEEEeeeEEecCCCCCCCcEEEcCCCc
Q 023514 66 SGTIHLSSYLSVSSYKTIDGRGQRIKLTG---------------KGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSR 130 (281)
Q Consensus 66 sG~I~l~~~l~v~sn~TI~G~G~g~~I~G---------------~gi~i~~a~NVIIrnL~i~~g~~~~~DaI~i~~~s~ 130 (281)
.|+..+++++.|.+.-|.+|.+. +..+ .-|.|. +-..|+|+.|-.. ..|||... +
T Consensus 13 ~~~~~~~~~i~V~aG~~fDG~~k--~~~~~~~~~~~~~q~e~q~~vF~le--~GatlkNvIiG~~---~~dGIHC~-G-- 82 (215)
T PF03211_consen 13 TGTVTVSSTIVVKAGEVFDGGMK--RYDRGPSACGDGGQSEDQDPVFILE--DGATLKNVIIGAN---QADGIHCK-G-- 82 (215)
T ss_dssp T-EEEESS-EEE-TTEEEEEEEE--EEEECCCTT--SSSGSC---SEEEE--TTEEEEEEEETSS----TT-EEEE-S--
T ss_pred CCceEcccCeEECCCceEeCCee--EEccCCCccCCCCcCCccceEEEec--CCCEEEEEEEcCC---CcCceEEc-C--
Confidence 35555666777766666666422 1111 115664 4456666666332 35777776 3
Q ss_pred eEEEeeeeeecCCCCeeEeeeCCccEEEeccEEcc-CCceeee
Q 023514 131 HIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQ-HDKTMLI 172 (281)
Q Consensus 131 nVwIDHcs~s~~~Dg~id~~~~s~nVTIS~~~f~~-h~k~~li 172 (281)
...|+++-+.+-.+..+.++..+..++|..+-+.+ .+|.+-+
T Consensus 83 ~Ctl~NVwwedVcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~ 125 (215)
T PF03211_consen 83 SCTLENVWWEDVCEDAATFKGDGGTVTIIGGGARNASDKVFQH 125 (215)
T ss_dssp CEEEEEEEESS-SSESEEEESSEEEEEEESTEEEEEEEEEEEE
T ss_pred CEEEEEEEecccceeeeEEcCCCceEEEeCCcccCCCccEEEe
Confidence 46666666666555556775544467777665543 3444443
No 78
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=61.98 E-value=1e+02 Score=27.41 Aligned_cols=73 Identities=12% Similarity=0.129 Sum_probs=45.2
Q ss_pred CCceEEEeeeeeecCC-CCeeE-----eeeCCccEEEeccEEccCCceeeec-CCCC-CC-CCcceEEEEeceeecCCCC
Q 023514 128 NSRHIWIDRCSLRDYD-DGLID-----ITRQSTDITVSRCYFTQHDKTMLIG-ADPS-HV-GDRCIRVTIHHCLFDGTRQ 198 (281)
Q Consensus 128 ~s~nVwIDHcs~s~~~-Dg~id-----~~~~s~nVTIS~~~f~~h~k~~liG-~~~~-~~-~d~~~~vT~hhN~f~~~~~ 198 (281)
.+++|+|.|+.|.... ...++ +..+-.+..|.+|.|++.......- ..+. .. ...+...++.+|.+.++..
T Consensus 32 ~a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII~NT~~ 111 (198)
T PF08480_consen 32 SAKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNIIVNTRK 111 (198)
T ss_pred ccccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceEeeeee
Confidence 4579999999997632 22111 1234567899999999865544332 1111 11 1234567778999999997
Q ss_pred CC
Q 023514 199 RH 200 (281)
Q Consensus 199 R~ 200 (281)
|.
T Consensus 112 r~ 113 (198)
T PF08480_consen 112 RK 113 (198)
T ss_pred cc
Confidence 74
No 79
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=53.48 E-value=79 Score=32.46 Aligned_cols=98 Identities=22% Similarity=0.380 Sum_probs=44.3
Q ss_pred eEEecC---cEEEeeecc----EEEeeeEEecCCCCCCCcEEEcCCCceEEEeeeeeecCCCCeeEeeeCCccEEEeccE
Q 023514 90 IKLTGK---GLRLKECEH----VIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCY 162 (281)
Q Consensus 90 ~~I~G~---gi~i~~a~N----VIIrnL~i~~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~id~~~~s~nVTIS~~~ 162 (281)
++|... .+.+.+.++ ..|+|++.-+...+..|||.+..+ + .|++|=|.-..|. |-+. -++++|++|.
T Consensus 336 iTI~~pP~~Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~ly~n-S--~i~dcF~h~nDD~-iKlY--hS~v~v~~~V 409 (582)
T PF03718_consen 336 ITINDPPFHSMDLYGNENDKFSMNISNYKQVGAWYFQTDGIELYPN-S--TIRDCFIHVNDDA-IKLY--HSNVSVSNTV 409 (582)
T ss_dssp -EEE--SS-SEEEESSSGGGEEEEEEEEEEE---CTT----B--TT----EEEEEEEEESS-S-EE----STTEEEEEEE
T ss_pred eEecCCCcceEEecCCccccccceeeceeeeeeEEeccCCccccCC-C--eeeeeEEEecCch-hhee--ecCcceeeeE
Confidence 355533 466765553 799999999888888999999633 3 3467766555666 4443 3788999988
Q ss_pred EccCCc--eeeecCCCCCCCC-cceEEEEeceee
Q 023514 163 FTQHDK--TMLIGADPSHVGD-RCIRVTIHHCLF 193 (281)
Q Consensus 163 f~~h~k--~~liG~~~~~~~d-~~~~vT~hhN~f 193 (281)
+...+- .+-+|.....+.. .--++.+-|+.+
T Consensus 410 iWk~~Ngpiiq~GW~pr~isnv~veni~IIh~r~ 443 (582)
T PF03718_consen 410 IWKNENGPIIQWGWTPRNISNVSVENIDIIHNRW 443 (582)
T ss_dssp EEE-SSS-SEE--CS---EEEEEEEEEEEEE---
T ss_pred EEecCCCCeEEeeccccccCceEEeeeEEEeeee
Confidence 764322 2344554322211 012555655533
No 80
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=38.79 E-value=1.1e+02 Score=29.99 Aligned_cols=30 Identities=7% Similarity=-0.043 Sum_probs=13.5
Q ss_pred EEEEcceEeCCcceeEEeccCceEEEEceEEec
Q 023514 208 VHLYNNYTRNWGIYAVCASVESQIYSQCNIYEA 240 (281)
Q Consensus 208 ~hv~NN~~~n~~~~~i~~~~~a~v~~e~N~F~~ 240 (281)
+.+.+++|+.- .++.-.++...+-+|.|..
T Consensus 190 lsVk~C~FekC---~igi~s~G~~~i~hn~~~e 219 (386)
T PF01696_consen 190 LSVKKCVFEKC---VIGIVSEGPARIRHNCASE 219 (386)
T ss_pred EEeeheeeehe---EEEEEecCCeEEecceecc
Confidence 33444444442 2333334444445555554
No 81
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=37.30 E-value=85 Score=20.14 Aligned_cols=41 Identities=15% Similarity=0.168 Sum_probs=27.9
Q ss_pred cEEEeeeccEEEeeeEEecCCCCCCCcEEEcCCCceEEEeeeeeec
Q 023514 96 GLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD 141 (281)
Q Consensus 96 gi~i~~a~NVIIrnL~i~~g~~~~~DaI~i~~~s~nVwIDHcs~s~ 141 (281)
||.+..+++..|++=++... .|||.+. .+++-.|..+.++.
T Consensus 1 GI~l~~s~~~~i~~N~i~~~----~~GI~~~-~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNN----SYGIYLT-DSSNNTLSNNTASS 41 (44)
T ss_pred CEEEEecCCCEEECcEEeCC----CCEEEEE-eCCCCEeECCEEEc
Confidence 46676677777777777763 4689887 55666666666654
No 82
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=30.28 E-value=3.2e+02 Score=26.15 Aligned_cols=128 Identities=17% Similarity=0.257 Sum_probs=0.0
Q ss_pred CCCeEEEcCCCC-CCChhHHHHhhcCCCeEEEEEeeeEE--EecceeEecCceeEEeecc-------------ceEEecC
Q 023514 32 HGPVYFVTNLSD-DGPGSLREGCRRREPLWIVFEVSGTI--HLSSYLSVSSYKTIDGRGQ-------------RIKLTGK 95 (281)
Q Consensus 32 gg~vv~VT~l~d-sg~GSLr~al~~~~pr~Ivf~vsG~I--~l~~~l~v~sn~TI~G~G~-------------g~~I~G~ 95 (281)
++..|-+...+. +...|+++|-+... .++| ..|-. ++...+-+.+-||+.-+|. |..+.|.
T Consensus 31 ~~~~vni~dy~~~dwiasfkqaf~e~q-tvvv--pagl~cenint~ifip~gktl~v~g~l~gngrgrfvlqdg~qv~ge 107 (464)
T PRK10123 31 ARQSVNINDYNPHDWIASFKQAFSEGQ-TVVV--PAGLVCDNINTGIFIPPGKTLHILGSLRGNGRGRFVLQDGSQVTGE 107 (464)
T ss_pred CCceeehhhcCcccHHHHHHHHhccCc-EEEe--cCccEecccccceEeCCCCeEEEEEEeecCCceeEEEecCCEeecC
Q ss_pred c--------EEEeeeccEEEeeeEEecCCCCCCCcEEEcC----CCceEEEeeeeeecCCCCee--EeeeCCccEEEecc
Q 023514 96 G--------LRLKECEHVIICNLEFEGGRGHDVDGIQIKP----NSRHIWIDRCSLRDYDDGLI--DITRQSTDITVSRC 161 (281)
Q Consensus 96 g--------i~i~~a~NVIIrnL~i~~g~~~~~DaI~i~~----~s~nVwIDHcs~s~~~Dg~i--d~~~~s~nVTIS~~ 161 (281)
+ +.++ .++..|+.|.+.+= ...--|.|.+ --+|..||..+++.+.-+.+ .+....+.+.|.+|
T Consensus 108 ~~g~~hnitldvr-gsdc~ikgiamsgf--gpvtqiyiggk~prvmrnl~id~itv~~anyailrqgfhnq~dgaritn~ 184 (464)
T PRK10123 108 EGGSMHNITLDVR-GSDCTIKGLAMSGF--GPVTQIYIGGKNKRVMRNLTIDNLTVSHANYAILRQGFHNQIIGANITNC 184 (464)
T ss_pred CCceeeeEEEeec-cCceEEeeeeeccc--CceeEEEEcCCCchhhhccEEccEEEeeccHHHHhhhhhhccccceeecc
Q ss_pred EEcc
Q 023514 162 YFTQ 165 (281)
Q Consensus 162 ~f~~ 165 (281)
.|++
T Consensus 185 rfs~ 188 (464)
T PRK10123 185 KFSD 188 (464)
T ss_pred cccc
No 83
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=28.94 E-value=4.6e+02 Score=24.08 Aligned_cols=73 Identities=18% Similarity=0.287 Sum_probs=46.7
Q ss_pred cCcEEEeeeccEEEeeeEEecCCCCCCCcEEEc-----CCCceEEEeeeeeecCCCCeeEee--eCCccEEEeccEEccC
Q 023514 94 GKGLRLKECEHVIICNLEFEGGRGHDVDGIQIK-----PNSRHIWIDRCSLRDYDDGLIDIT--RQSTDITVSRCYFTQH 166 (281)
Q Consensus 94 G~gi~i~~a~NVIIrnL~i~~g~~~~~DaI~i~-----~~s~nVwIDHcs~s~~~Dg~id~~--~~s~nVTIS~~~f~~h 166 (281)
|.+++|. +.+..|+|-+|.+.. .+||.+. +...+..|.-+.+.....| +++. ..+...+|.+|+|++.
T Consensus 114 g~Gi~Ie-ss~~tI~Nntf~~~~---~~GI~v~g~~~~~~i~~~vI~GN~~~~~~~G-i~i~~~~~~~~n~I~NN~I~~N 188 (246)
T PF07602_consen 114 GTGIWIE-SSSPTIANNTFTNNG---REGIFVTGTSANPGINGNVISGNSIYFNKTG-ISISDNAAPVENKIENNIIENN 188 (246)
T ss_pred ceEEEEe-cCCcEEEeeEEECCc---cccEEEEeeecCCcccceEeecceEEecCcC-eEEEcccCCccceeeccEEEeC
Confidence 3468887 559999999999843 3556543 2334556777777766556 3332 1222347899999987
Q ss_pred Cceee
Q 023514 167 DKTML 171 (281)
Q Consensus 167 ~k~~l 171 (281)
..++.
T Consensus 189 ~~Gi~ 193 (246)
T PF07602_consen 189 NIGIV 193 (246)
T ss_pred CcCeE
Confidence 66654
No 84
>PRK03174 sspH acid-soluble spore protein H; Provisional
Probab=25.37 E-value=59 Score=23.36 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=12.7
Q ss_pred CcEEEcCCCceEEEeeee
Q 023514 121 DGIQIKPNSRHIWIDRCS 138 (281)
Q Consensus 121 DaI~i~~~s~nVwIDHcs 138 (281)
+-+.+.-.+..|||+||+
T Consensus 14 ~~i~VtY~G~pV~Ie~vd 31 (59)
T PRK03174 14 DMANVTYNGVPIYIQHVD 31 (59)
T ss_pred cceEEEECCEEEEEEEEc
Confidence 344443356899999997
No 85
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=24.57 E-value=1.1e+02 Score=16.31 Aligned_cols=13 Identities=15% Similarity=0.409 Sum_probs=5.8
Q ss_pred eEEEeeeeeecCC
Q 023514 131 HIWIDRCSLRDYD 143 (281)
Q Consensus 131 nVwIDHcs~s~~~ 143 (281)
+++|.+|.|....
T Consensus 3 ~~~i~~n~i~~~~ 15 (26)
T smart00710 3 NVTIENNTIRNNG 15 (26)
T ss_pred CEEEECCEEEeCC
Confidence 3444444444433
No 86
>PF06355 Aegerolysin: Aegerolysin; InterPro: IPR009413 This family consists of several bacterial and eukaryotic Aegerolysin-like proteins. Aegerolysin and ostreolysin are expressed during formation of primordia and fruiting bodies, and these haemolysins may play an important role in initial phase of fungal fruiting. The bacterial members of this family are expressed during sporulation []. Ostreolysin was found cytolytic to various erythrocytes and tumour cells []. It forms transmembrane pores 4 nm in diameter. Its activity is inhibited by total membrane lipids, and modulated by lysophosphatides.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0030582 fruiting body development
Probab=23.46 E-value=4.2e+02 Score=21.82 Aligned_cols=59 Identities=25% Similarity=0.279 Sum_probs=39.2
Q ss_pred eccEEEeeeEEecCCC------------CCCCcEEEcCCCceEEEeeeeeec---CCCCeeEeeeCCccE-EEecc
Q 023514 102 CEHVIICNLEFEGGRG------------HDVDGIQIKPNSRHIWIDRCSLRD---YDDGLIDITRQSTDI-TVSRC 161 (281)
Q Consensus 102 a~NVIIrnL~i~~g~~------------~~~DaI~i~~~s~nVwIDHcs~s~---~~Dg~id~~~~s~nV-TIS~~ 161 (281)
..++-|||..++.|+- .+.|++.|. .....+|--|.=++ +..|.+|+..+...| ||.|.
T Consensus 14 ~~~l~i~Na~L~~GKfy~~~~kd~eis~~~v~~~~i~-~~~~~~i~scGr~~~~sGTEGsfdl~dg~~kI~~lyWd 88 (131)
T PF06355_consen 14 SGDLKIKNAQLSWGKFYRDGNKDDEISPDDVNGIVIP-PGGSYSICSCGREGSPSGTEGSFDLYDGDTKICTLYWD 88 (131)
T ss_pred CccEEEEccEeccCccccCCCcCCEeCccccCceEec-CCCeEEEEEecCCCCCcCceEEEEEEeCCEEEEEEEEe
Confidence 3478888888887651 234677776 34567888887755 467888887654445 66553
No 87
>PRK01625 sspH acid-soluble spore protein H; Provisional
Probab=22.32 E-value=74 Score=22.88 Aligned_cols=18 Identities=22% Similarity=0.713 Sum_probs=12.6
Q ss_pred CcEEEcCCCceEEEeeee
Q 023514 121 DGIQIKPNSRHIWIDRCS 138 (281)
Q Consensus 121 DaI~i~~~s~nVwIDHcs 138 (281)
+-|.+.-....|||+|++
T Consensus 14 ~~i~V~Y~G~pV~Iq~vd 31 (59)
T PRK01625 14 SRIDVTYEGVPVWIESCD 31 (59)
T ss_pred cceEEEECCEEEEEEEEc
Confidence 334443356899999997
No 88
>TIGR02861 SASP_H small acid-soluble spore protein, H-type. This model is derived from pfam08141 but has been expanded to include in the seed corresponding proteins from three species of Clostridium. Members of this family should occur only in endospore-forming bacteria, typically with two members per genome, but may be absent from the genomes of some endospore-forming bacteria. SspH (previously designated YfjU) was shown to be expressed specifically in spores of Bacillus subtilis.
Probab=20.48 E-value=83 Score=22.47 Aligned_cols=16 Identities=13% Similarity=0.374 Sum_probs=11.7
Q ss_pred EEEcCCCceEEEeeee
Q 023514 123 IQIKPNSRHIWIDRCS 138 (281)
Q Consensus 123 I~i~~~s~nVwIDHcs 138 (281)
+.+.-.+..|||+|++
T Consensus 16 i~V~Y~G~pV~Ie~vd 31 (58)
T TIGR02861 16 INVTYKGVPVYIEHVD 31 (58)
T ss_pred eEEEECCEEEEEEEEc
Confidence 4443356899999997
Done!