Citrus Sinensis ID: 023515
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 281 | 2.2.26 [Sep-21-2011] | |||||||
| Q500U8 | 326 | Tetraketide alpha-pyrone | no | no | 0.971 | 0.837 | 0.494 | 3e-69 | |
| Q9S9N9 | 344 | Cinnamoyl-CoA reductase 1 | no | no | 0.964 | 0.787 | 0.512 | 2e-66 | |
| Q9CA28 | 321 | Tetraketide alpha-pyrone | no | no | 0.950 | 0.831 | 0.442 | 6e-60 | |
| Q9SAH9 | 332 | Cinnamoyl-CoA reductase 2 | no | no | 0.946 | 0.801 | 0.485 | 7e-60 | |
| Q9XES5 | 348 | Bifunctional dihydroflavo | N/A | no | 0.950 | 0.767 | 0.44 | 9e-60 | |
| Q84KP0 | 347 | Bifunctional dihydroflavo | N/A | no | 0.950 | 0.769 | 0.432 | 4e-59 | |
| P51110 | 337 | Dihydroflavonol-4-reducta | no | no | 0.964 | 0.804 | 0.422 | 2e-58 | |
| P51104 | 360 | Dihydroflavonol-4-reducta | N/A | no | 0.957 | 0.747 | 0.428 | 2e-56 | |
| P51102 | 382 | Dihydroflavonol-4-reducta | no | no | 0.950 | 0.698 | 0.418 | 5e-53 | |
| P51105 | 366 | Dihydroflavonol-4-reducta | N/A | no | 0.950 | 0.729 | 0.403 | 7e-53 |
| >sp|Q500U8|TKPR1_ARATH Tetraketide alpha-pyrone reductase 1 OS=Arabidopsis thaliana GN=TKPR1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 261 bits (668), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 137/277 (49%), Positives = 186/277 (67%), Gaps = 4/277 (1%)
Query: 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFK 66
A GKV CVTGASG++ASWLVK LL GY V +VRDP + KK HL L+GA ERL+L K
Sbjct: 4 AKGKV-CVTGASGFLASWLVKRLLLEGYEVIGTVRDPGNEKKLAHLWKLEGAKERLRLVK 62
Query: 67 ANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKR 126
A+L+EEGSFD+ + GC GV HTASP +P+ E+L PA++GTLNVL SC K PS+KR
Sbjct: 63 ADLMEEGSFDNAIMGCQGVFHTASPVLKPTSNPEEEILRPAIEGTLNVLRSCRKNPSLKR 122
Query: 127 VVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKS 186
VVLTSS + V P + +DE+ ++ E+CK+ ++WY LSKTLAE AAWKF++E
Sbjct: 123 VVLTSSSSTV-RIRDDFDPKIPLDESIWTSVELCKRFQVWYALSKTLAEQAAWKFSEENG 181
Query: 187 IDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKG--AQTYPNVTFGWVNVKDVANAHIQAF 244
IDLVT+ P+ ++GP L P L ++A+ VL L+KG + + G+V++ DVA HI F
Sbjct: 182 IDLVTVLPSFLVGPSLPPDLCSTASDVLGLLKGETEKFQWHGQMGYVHIDDVARTHIVVF 241
Query: 245 EVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEK 281
E +A GRY V E+V+ + YP+ +P++
Sbjct: 242 EHEAAQGRYICSSNVISLEELVSFLSARYPSLPIPKR 278
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Involved in the biosynthesis of hydroxylated tetraketide compounds that serve as sporopollenin precursors (the main constituents of exine). Is essential for pollen wall development. Acts on tetraketide alpha-pyrones and reduces the carbonyl function on the tetraketide alkyl chain to a secondary alcohol function. Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q9S9N9|CCR1_ARATH Cinnamoyl-CoA reductase 1 OS=Arabidopsis thaliana GN=CCR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 252 bits (643), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 143/279 (51%), Positives = 193/279 (69%), Gaps = 8/279 (2%)
Query: 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQ 63
VA+ AGK VCVTGA GYIASW+VK+LL RGYTVK +VR+P+DPK T HL L+G ERL
Sbjct: 5 VASPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNT-HLRELEGGKERLI 63
Query: 64 LFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS 123
L KA+L + + + +DGCDGV HTASP DP+ ++++PAV G V+N+ A+
Sbjct: 64 LCKADLQDYEALKAAIDGCDGVFHTASPV---TDDPE-QMVEPAVNGAKFVINAAAE-AK 118
Query: 124 IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAK 183
+KRVV+TSS+ AV R P+ VVDE+ +SD + CK ++ WY K +AE AAW+ AK
Sbjct: 119 VKRVVITSSIGAVY-MDPNRDPEAVVDESCWSDLDFCKNTKNWYCYGKMVAEQAAWETAK 177
Query: 184 EKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKG-AQTYPNVTFGWVNVKDVANAHIQ 242
EK +DLV +NP +V+GP LQPT+N S VL + G A+TY N+T +V+V+DVA AH+
Sbjct: 178 EKGVDLVVLNPVLVLGPPLQPTINASLYHVLKYLTGSAKTYANLTQAYVDVRDVALAHVL 237
Query: 243 AFEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEK 281
+E PSA+GRY L E H E+V I+ +L+P + LP K
Sbjct: 238 VYEAPSASGRYLLAESARHRGEVVEILAKLFPEYPLPTK 276
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Involved in the latter stages of lignin biosynthesis. Catalyzes one of the last steps of monolignol biosynthesis, the conversion of cinnamoyl-CoAs into their corresponding cinnamaldehydes. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|Q9CA28|TKPR2_ARATH Tetraketide alpha-pyrone reductase 2 OS=Arabidopsis thaliana GN=TKPR2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 231 bits (588), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 120/271 (44%), Positives = 175/271 (64%), Gaps = 4/271 (1%)
Query: 14 VTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEG 73
VTG +G+IAS+++K LL G+TV+ +VR+P D +K L GA +RL++ +A+L EG
Sbjct: 6 VTGGTGFIASYIIKSLLELGHTVRTTVRNPRDEEKVGFLWEFQGAKQRLKILQADLTVEG 65
Query: 74 SFDSIVDGCDGVCHTASP-FYHDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTS 131
SFD V+G DGV HTASP + Q L+DP +KGT NV++SCAK ++KR+VLTS
Sbjct: 66 SFDEAVNGVDGVFHTASPVLVPQDHNIQETLVDPIIKGTTNVMSSCAKSKATLKRIVLTS 125
Query: 132 SMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVT 191
S +++ T ++E+ +SDPE CK+ LWY +KTL E AW+ A+EK +DLV
Sbjct: 126 SCSSIRYRFDA-TEASPLNESHWSDPEYCKRFNLWYGYAKTLGEREAWRIAEEKGLDLVV 184
Query: 192 INPAMVIGPLLQPTLNTSAAAVLSLIKG-AQTYPNVTFGWVNVKDVANAHIQAFEVPSAN 250
+NP+ V+GPLL P ++ +L++ KG A YPN T G+V++ DV AH+ A E P A+
Sbjct: 185 VNPSFVVGPLLGPKPTSTLLMILAIAKGLAGEYPNFTVGFVHIDDVVAAHVLAMEEPKAS 244
Query: 251 GRYCLVERVSHYSEIVNIIRELYPAFQLPEK 281
GR V+H+SEI+ ++R YP + K
Sbjct: 245 GRIICSSSVAHWSEIIELMRNKYPNYPFENK 275
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May be involved in the biosynthesis of hydroxylated tetraketide compounds that serve as sporopollenin precursors (the main constituents of exine). Acts on tetraketide alpha-pyrones and reduces the carbonyl function on the tetraketide alkyl chain to a secondary alcohol function. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9SAH9|CCR2_ARATH Cinnamoyl-CoA reductase 2 OS=Arabidopsis thaliana GN=CCR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 230 bits (587), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 133/274 (48%), Positives = 178/274 (64%), Gaps = 8/274 (2%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKAN 68
GK+VCVTGA GYIASW+VKLLL RGYTV+ +VR+P DPK HL L GA ERL L A+
Sbjct: 5 GKLVCVTGAGGYIASWIVKLLLERGYTVRGTVRNPTDPK-NNHLRELQGAKERLTLHSAD 63
Query: 69 LLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVV 128
LL+ + + +DGCDGV HTASP DP+ +L+PAV G V+++ AK +KRVV
Sbjct: 64 LLDYEALCATIDGCDGVFHTASPM---TDDPET-MLEPAVNGAKFVIDAAAK-AKVKRVV 118
Query: 129 LTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSID 188
TSS+ AV R +VDE +SD + CK ++ WY K LAE +AW+ AK K +D
Sbjct: 119 FTSSIGAVY-MNPNRDTQAIVDENCWSDLDFCKNTKNWYCYGKMLAEQSAWETAKAKGVD 177
Query: 189 LVTINPAMVIGPLLQPTLNTSAAAVLSLIKG-AQTYPNVTFGWVNVKDVANAHIQAFEVP 247
LV +NP +V+GP LQ +N S +L + G A+TY N+T +V+V+DVA H+ +E P
Sbjct: 178 LVVLNPVLVLGPPLQSAINASLVHILKYLTGSAKTYANLTQVYVDVRDVALGHVLVYEAP 237
Query: 248 SANGRYCLVERVSHYSEIVNIIRELYPAFQLPEK 281
SA+GRY L E H E+V I+ + +P + LP K
Sbjct: 238 SASGRYILAETALHRGEVVEILAKFFPEYPLPTK 271
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Cinnamoyl-CoA reductase probably involved in the formation of phenolic compounds associated with the hypersensitive response. Seems not to be involved in lignin biosynthesis. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|Q9XES5|DFRA_MALDO Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase OS=Malus domestica GN=DFR PE=1 SV=1 | Back alignment and function description |
|---|
Score = 230 bits (586), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 121/275 (44%), Positives = 176/275 (64%), Gaps = 8/275 (2%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
VCVTGASG+I SWLV LL GYTV+A+VRDP + KK +HLL L A L L+KA+L +
Sbjct: 8 VCVTGASGFIGSWLVMRLLEHGYTVRATVRDPTNQKKVKHLLDLPKAETHLTLWKADLAD 67
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131
EGSFD + GC GV H A+P ++KDP+ E++ P + G L++L +C K +++++V TS
Sbjct: 68 EGSFDEAIQGCSGVFHVATPMDFESKDPENEVIKPTINGLLDILKACQKAKTVRKLVFTS 127
Query: 132 SMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL--W-YPLSKTLAEDAAWKFAKEKSID 188
S A +N + + P V DE+ +SD E C+ ++ W Y +SKTLAE AAWK+AKE +ID
Sbjct: 128 S-AGTVNVEEHQKP--VYDESNWSDVEFCRSVKMTGWMYFVSKTLAEQAAWKYAKENNID 184
Query: 189 LVTINPAMVIGPLLQPTLNTSAAAVLS-LIKGAQTYPNVTFG-WVNVKDVANAHIQAFEV 246
+TI P +VIGP L P++ S LS +++ Y + G +V++ D+ +HI +E
Sbjct: 185 FITIIPTLVIGPFLMPSMPPSLITGLSPILRNESHYGIIKQGQYVHLDDLCLSHIYLYEH 244
Query: 247 PSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEK 281
P A GRY + E+V ++RE YP + +P K
Sbjct: 245 PKAEGRYICSSHDATIHELVKMLREKYPEYNIPTK 279
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Bifunctional enzyme involved in the flavonoid metabolism. May use dihydroquercetin, dihydrokaempferol, eriodictyol, garbanzol (5-deoxydihydrokaempferol), dihydrofisetin (5-deoxydihydroquercetin), naringenin to a low extent (10%), but not 5-deoxynaringenin or butin (5-deoxyeriodictyol) as substrate. Malus domestica (taxid: 3750) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 3 EC: 4 |
| >sp|Q84KP0|DFRA_PYRCO Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase OS=Pyrus communis GN=DFR PE=1 SV=1 | Back alignment and function description |
|---|
Score = 228 bits (581), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 119/275 (43%), Positives = 176/275 (64%), Gaps = 8/275 (2%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
VCVTGASG+I SWLV LL GYTV+A+VRDP + KK +HLL L A L L+KA+L +
Sbjct: 8 VCVTGASGFIGSWLVMRLLEHGYTVRATVRDPTNQKKVKHLLDLPKAETHLTLWKADLAD 67
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131
EGSFD + GC GV H A+P +++DP+ E++ P + G L++L +C K +++++V TS
Sbjct: 68 EGSFDEAIQGCSGVFHVATPMDFESRDPENEVIKPTINGLLDILKACQKAKTVRKLVFTS 127
Query: 132 SMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL--W-YPLSKTLAEDAAWKFAKEKSID 188
S A +N + + P V DE+ +SD E C+ ++ W Y +SKTLAE AAWK+AKE +ID
Sbjct: 128 S-AGTVNVEEHQKP--VYDESNWSDVEFCRSVKMTGWMYFVSKTLAEQAAWKYAKENNID 184
Query: 189 LVTINPAMVIGPLLQPTLNTSAAAVLS-LIKGAQTYPNVTFG-WVNVKDVANAHIQAFEV 246
+TI P +VIGP L P++ S LS +++ Y + G +V++ D+ +HI ++
Sbjct: 185 FITIIPTLVIGPFLMPSMPPSLITGLSPILRNESHYGIIKQGQYVHLDDLCLSHIYLYKH 244
Query: 247 PSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEK 281
P A GRY + E+V ++RE YP + +P K
Sbjct: 245 PKAEGRYICSSHDATIHELVKMLREKYPEYNIPTK 279
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Bifunctional enzyme involved in the flavonoid metabolism. May use dihydroquercetin, eriodictyol, garbanzol (5-deoxydihydrokaempferol), dihydrofisetin (5-deoxydihydroquercetin), dihydrokaempferol to a low extent (5%), but not naringenin, 5-deoxynaringenin or butin (5-deoxyeriodictyol) as substrate. Pyrus communis (taxid: 23211) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 3 EC: 4 |
| >sp|P51110|DFRA_VITVI Dihydroflavonol-4-reductase OS=Vitis vinifera GN=DFR PE=1 SV=1 | Back alignment and function description |
|---|
Score = 225 bits (574), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 118/279 (42%), Positives = 174/279 (62%), Gaps = 8/279 (2%)
Query: 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLF 65
+ + VCVTGASG+I SWLV LL R TV+A+VRDP + KK +HLL L A L L+
Sbjct: 2 GSQSETVCVTGASGFIGSWLVMRLLERRLTVRATVRDPTNVKKVKHLLDLPKAETHLTLW 61
Query: 66 KANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIK 125
KA+L +EGSFD + GC GV H A+P ++KDP+ E++ P ++G L ++ SCA +++
Sbjct: 62 KADLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVR 121
Query: 126 RVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL--W-YPLSKTLAEDAAWKFA 182
R+V TSS A +N + + P V DE+ +SD E C+ ++ W Y +SKTLAE AAWK+A
Sbjct: 122 RLVFTSS-AGTVNIQEHQLP--VYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYA 178
Query: 183 KEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF--GWVNVKDVANAH 240
KE +ID +TI P +V+GP + ++ S LS I G + + ++ +V++ D+ NAH
Sbjct: 179 KENNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAH 238
Query: 241 IQAFEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLP 279
I FE P A GRY ++ ++RE YP + +P
Sbjct: 239 IYLFENPKAEGRYICSSHDCIILDLAKMLREKYPEYNIP 277
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Vitis vinifera (taxid: 29760) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 1 EC: 9 |
| >sp|P51104|DFRA_DIACA Dihydroflavonol-4-reductase OS=Dianthus caryophyllus GN=A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 219 bits (558), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 119/278 (42%), Positives = 175/278 (62%), Gaps = 9/278 (3%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKAN 68
G+ VCVTGASG+I SWL+ LL RGYTV+A+VRDP++ KK +HLL L A L L+KA+
Sbjct: 22 GETVCVTGASGFIGSWLIMRLLERGYTVRATVRDPDNTKKVQHLLDLPNAKTNLTLWKAD 81
Query: 69 LLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVV 128
L EEGSFD+ VDGC GV H A+P ++KDP+ E++ P + G L++L SC K ++RVV
Sbjct: 82 LHEEGSFDAAVDGCTGVFHIATPMDFESKDPENEMIKPTINGMLDILKSCVK-AKLRRVV 140
Query: 129 LTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL--W-YPLSKTLAEDAAWKFAKEK 185
TSS +N + P V DET +S + + ++ W Y +SK LAE AAWK+A E
Sbjct: 141 FTSS-GGTVNVEATQKP--VYDETCWSALDFIRSVKMTGWMYFVSKILAEQAAWKYAAEN 197
Query: 186 SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT-YPNVTFG-WVNVKDVANAHIQA 243
+++ ++I P +V+GP + P++ S LS I ++ Y + G +V++ D+ +HI
Sbjct: 198 NLEFISIIPPLVVGPFIMPSMPPSLITALSPITRTESHYTIIKQGQFVHLDDLCMSHIFL 257
Query: 244 FEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEK 281
+E P ANGRY + +I ++RE YP + +P K
Sbjct: 258 YENPKANGRYIASACAATIYDIAKMLREEYPEYNVPTK 295
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Dianthus caryophyllus (taxid: 3570) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 1 EC: 9 |
| >sp|P51102|DFRA_ARATH Dihydroflavonol-4-reductase OS=Arabidopsis thaliana GN=DFRA PE=3 SV=2 | Back alignment and function description |
|---|
Score = 207 bits (528), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 115/275 (41%), Positives = 167/275 (60%), Gaps = 8/275 (2%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69
+ VCVTGASG+I SWLV LL RGY V+A+VRDP + KK +HLL L A L L+KA+L
Sbjct: 6 ETVCVTGASGFIGSWLVMRLLERGYFVRATVRDPGNLKKVQHLLDLPNAKTLLTLWKADL 65
Query: 70 LEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVL 129
EEGS+D ++GCDGV H A+P ++KDP+ E++ P V G L ++ +C K +++R V
Sbjct: 66 SEEGSYDDAINGCDGVFHVATPMDFESKDPENEVIKPTVNGMLGIMKACVKAKTVRRFVF 125
Query: 130 TSSMAAVLNTGKPRTPDVVVDETWFSDPE--VCKQSELW-YPLSKTLAEDAAWKFAKEKS 186
TSS A +N + + V DE +SD E + K+ W Y +SKTLAE AAW FA+EK
Sbjct: 126 TSS-AGTVNVEEHQKN--VYDENDWSDLEFIMSKKMTGWMYFVSKTLAEKAAWDFAEEKG 182
Query: 187 IDLVTINPAMVIGPLLQPTLNTSAAAVLS-LIKGAQTYPNVTFG-WVNVKDVANAHIQAF 244
+D ++I P +V+GP + ++ S LS + + Y + G +V++ D+ NAHI +
Sbjct: 183 LDFISIIPTLVVGPFITTSMPPSLITALSPITRNEAHYSIIRQGQYVHLDDLCNAHIFLY 242
Query: 245 EVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLP 279
E +A GRY + I +R YP + +P
Sbjct: 243 EQAAAKGRYICSSHDATILTISKFLRPKYPEYNVP 277
|
Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 1 EC: 9 |
| >sp|P51105|DFRA_GERHY Dihydroflavonol-4-reductase OS=Gerbera hybrida GN=DFR PE=2 SV=1 | Back alignment and function description |
|---|
Score = 207 bits (527), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 111/275 (40%), Positives = 163/275 (59%), Gaps = 8/275 (2%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
VCVTGA+G+I SWLV LL RGY V A+VRDP D KK +HLL L A L+L+KA+L +
Sbjct: 9 VCVTGAAGFIGSWLVMRLLERGYVVHATVRDPGDLKKVKHLLELPKAQTNLKLWKADLTQ 68
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131
EGSFD + GC GV H A+P ++KDP+ E++ P ++G L+++ SC K ++K++V TS
Sbjct: 69 EGSFDEAIQGCHGVFHLATPMDFESKDPENEIIKPTIEGVLSIIRSCVKAKTVKKLVFTS 128
Query: 132 SMAAVLNTGKPRTPDVVVDETWFSDPEV--CKQSELW-YPLSKTLAEDAAWKFAKEKSID 188
S V K V DE+ +SD + K+ W Y +SKTLAE AAW K +I
Sbjct: 129 SAGTVNGQEKQLH---VYDESHWSDLDFIYSKKMTAWMYFVSKTLAEKAAWDATKGNNIS 185
Query: 189 LVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV--TFGWVNVKDVANAHIQAFEV 246
++I P +V+GP + T S LSLI G + + ++ +V++ D+ HI +E
Sbjct: 186 FISIIPTLVVGPFITSTFPPSLVTALSLITGNEAHYSIIKQGQYVHLDDLCECHIYLYEN 245
Query: 247 PSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEK 281
P A GRY + ++ II++ +P + +P K
Sbjct: 246 PKAKGRYICSSHDATIHQLAKIIKDKWPEYYIPTK 280
|
Gerbera hybrida (taxid: 18101) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 1 EC: 9 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 281 | ||||||
| 224106191 | 325 | cinnamoyl CoA reductase-like protein [Po | 0.989 | 0.855 | 0.834 | 1e-137 | |
| 2981475 | 325 | putative cinnamyl alcohol dehydrogenase | 0.989 | 0.855 | 0.823 | 1e-135 | |
| 224054972 | 325 | cinnamoyl CoA reductase-like protein [Po | 0.989 | 0.855 | 0.820 | 1e-135 | |
| 270055150 | 322 | phenylacetaldehyde reductase [Rosa x dam | 0.975 | 0.850 | 0.821 | 1e-134 | |
| 82568689 | 325 | Cinnamyl alcohol dehydrogenase [Prunus m | 0.989 | 0.855 | 0.816 | 1e-134 | |
| 308943767 | 324 | cinnamyl alcohol dehydrogenase [Camellia | 0.982 | 0.851 | 0.811 | 1e-133 | |
| 297847514 | 796 | hypothetical protein ARALYDRAFT_314503 [ | 0.967 | 0.341 | 0.805 | 1e-132 | |
| 12325359 | 809 | cinnamyl alcohol dehydrogenase, putative | 0.967 | 0.336 | 0.808 | 1e-132 | |
| 1143445 | 327 | cinnamyl alcohol dehydrogenase [Eucalypt | 0.992 | 0.853 | 0.810 | 1e-131 | |
| 408777393 | 326 | cinnamyl alcohol dehydrogenase [Punica g | 0.978 | 0.843 | 0.796 | 1e-131 |
| >gi|224106191|ref|XP_002314079.1| cinnamoyl CoA reductase-like protein [Populus trichocarpa] gi|222850487|gb|EEE88034.1| cinnamoyl CoA reductase-like protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 232/278 (83%), Positives = 257/278 (92%)
Query: 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQ 63
+++ AGK+VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKT HL AL+GA ERLQ
Sbjct: 1 MSSGAGKIVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTEHLRALNGAQERLQ 60
Query: 64 LFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS 123
LFKANLLEEGSFDSIV+GC+GV HTASPFYHD KDPQVELLDPAVKGTLNVL SCAK PS
Sbjct: 61 LFKANLLEEGSFDSIVEGCEGVFHTASPFYHDVKDPQVELLDPAVKGTLNVLGSCAKHPS 120
Query: 124 IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAK 183
I+RVVLTSS+AAV GKPRTPDVVVDETWFSDP +C++S++WY LSKTLAEDAAWKFAK
Sbjct: 121 IRRVVLTSSVAAVAYNGKPRTPDVVVDETWFSDPNLCRESKVWYVLSKTLAEDAAWKFAK 180
Query: 184 EKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQA 243
EK +D+V INPAMVIGPLLQPTLNTSAAA+LSLIKGAQT+PN +FGW+NVKDVANAHIQA
Sbjct: 181 EKDMDMVAINPAMVIGPLLQPTLNTSAAAILSLIKGAQTFPNASFGWINVKDVANAHIQA 240
Query: 244 FEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEK 281
FE+ SA+GRYCLVERV+HYSE+V I+ ELYP QLPEK
Sbjct: 241 FELSSASGRYCLVERVAHYSEVVKILHELYPDLQLPEK 278
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|2981475|gb|AAC06319.1| putative cinnamyl alcohol dehydrogenase [Malus x domestica] | Back alignment and taxonomy information |
|---|
Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust.
Identities = 229/278 (82%), Positives = 255/278 (91%)
Query: 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQ 63
+++ AGKVVCVTGASGYIASWLVKLLL RGYTVKAS+RDPNDP KT HL ALDGA +RLQ
Sbjct: 1 MSSGAGKVVCVTGASGYIASWLVKLLLQRGYTVKASIRDPNDPTKTEHLHALDGAQDRLQ 60
Query: 64 LFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS 123
LFKANLLEEGSFDS V+GC+GV HTASPFYHD DP+ ELL+PAVKGTLNVLNSCAK PS
Sbjct: 61 LFKANLLEEGSFDSAVEGCEGVFHTASPFYHDVTDPKAELLEPAVKGTLNVLNSCAKSPS 120
Query: 124 IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAK 183
IKRVVLTSS+AAV GKPRTPDVVVDETWF+DP+VCK+S+LWY LSKTLAEDAAWKF K
Sbjct: 121 IKRVVLTSSIAAVAYNGKPRTPDVVVDETWFTDPDVCKESKLWYVLSKTLAEDAAWKFVK 180
Query: 184 EKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQA 243
EK IDLVTINPAMVIGPLLQPTLNTSAAAVL++IKGA+T+PN +FGW+NVKDVANAHIQA
Sbjct: 181 EKGIDLVTINPAMVIGPLLQPTLNTSAAAVLNVIKGARTFPNASFGWINVKDVANAHIQA 240
Query: 244 FEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEK 281
FE P+A+GRYCLVERV+H+SE+V I+RELYP QLPEK
Sbjct: 241 FERPTASGRYCLVERVAHFSEVVRILRELYPTLQLPEK 278
|
Source: Malus x domestica Species: Malus x domestica Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224054972|ref|XP_002298395.1| cinnamoyl CoA reductase-like protein [Populus trichocarpa] gi|222845653|gb|EEE83200.1| cinnamoyl CoA reductase-like protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 486 bits (1250), Expect = e-135, Method: Compositional matrix adjust.
Identities = 228/278 (82%), Positives = 254/278 (91%)
Query: 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQ 63
++ AGK+VCVTGASGYIASW+VKLLLSRGYTVKASVRDPNDPKKT+HL AL GA ERL+
Sbjct: 1 MSTGAGKIVCVTGASGYIASWIVKLLLSRGYTVKASVRDPNDPKKTQHLRALRGAQERLE 60
Query: 64 LFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS 123
L KANLLEEGSFDSIV+GC+GV HTASPFYHD KDPQ ELLDPAVKGTLNVL SCA+ PS
Sbjct: 61 LVKANLLEEGSFDSIVEGCEGVFHTASPFYHDVKDPQAELLDPAVKGTLNVLGSCARHPS 120
Query: 124 IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAK 183
IKRVVLTSSMAAV KPRTPDVVVDETWFSDPE+C++S+LWY LSKTLAEDAAWKFAK
Sbjct: 121 IKRVVLTSSMAAVAYNRKPRTPDVVVDETWFSDPELCRESKLWYVLSKTLAEDAAWKFAK 180
Query: 184 EKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQA 243
EK +D+V INP+MVIGPLLQPTLNTSAAA+LSLIKGAQT+ N +FGW+NVKDVANAHIQA
Sbjct: 181 EKGMDMVAINPSMVIGPLLQPTLNTSAAAILSLIKGAQTFSNASFGWINVKDVANAHIQA 240
Query: 244 FEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEK 281
FE+ SA+GRYCLVERV+H+SE+V I+RELYP QLPEK
Sbjct: 241 FELSSASGRYCLVERVAHHSEVVKILRELYPDLQLPEK 278
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|270055150|dbj|BAG13450.2| phenylacetaldehyde reductase [Rosa x damascena] | Back alignment and taxonomy information |
|---|
Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust.
Identities = 225/274 (82%), Positives = 252/274 (91%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
+ KVVCVTGASGYIASWLVKLLL RGYTVKASVR+PNDP KT HLLALDGA ERLQLFKA
Sbjct: 2 SNKVVCVTGASGYIASWLVKLLLQRGYTVKASVRNPNDPTKTEHLLALDGAKERLQLFKA 61
Query: 68 NLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRV 127
+LLEEGSFDS V+GC+GV HTASPFYHD DP+ ELLDPAVKGTLNVLNSC+K PSIKRV
Sbjct: 62 DLLEEGSFDSAVEGCEGVFHTASPFYHDVTDPKAELLDPAVKGTLNVLNSCSKSPSIKRV 121
Query: 128 VLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSI 187
VLTSS+AAV GKPRTPDVVVDETWF+DP+VCK+S+LWY LSKTLAEDAAWKF KEK I
Sbjct: 122 VLTSSIAAVAYNGKPRTPDVVVDETWFTDPDVCKESKLWYVLSKTLAEDAAWKFVKEKGI 181
Query: 188 DLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP 247
D+VTINPAMVIGPLLQPTLNTSAAA+L++IKGA+TYPN +FGW+NVKDVANAH+QAFE+P
Sbjct: 182 DMVTINPAMVIGPLLQPTLNTSAAAILNIIKGARTYPNASFGWINVKDVANAHVQAFEIP 241
Query: 248 SANGRYCLVERVSHYSEIVNIIRELYPAFQLPEK 281
SA+GRYCLVERV+H++E++ II ELYP QLPEK
Sbjct: 242 SASGRYCLVERVAHFTEVLQIIHELYPDLQLPEK 275
|
Source: Rosa x damascena Species: Rosa x damascena Genus: Rosa Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|82568689|dbj|BAE48658.1| Cinnamyl alcohol dehydrogenase [Prunus mume] | Back alignment and taxonomy information |
|---|
Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust.
Identities = 227/278 (81%), Positives = 252/278 (90%)
Query: 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQ 63
+++ AGKVVCVTGASGYIASWLVKLLL GYTVKASVRDPNDP KT HLL LDGA ERLQ
Sbjct: 1 MSSGAGKVVCVTGASGYIASWLVKLLLQGGYTVKASVRDPNDPTKTEHLLGLDGAQERLQ 60
Query: 64 LFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS 123
LFKANLLEEGSFDS VDGC+GV HTASPFYHD DP+ ELLDPAVKGTLNVLNSCAK S
Sbjct: 61 LFKANLLEEGSFDSAVDGCEGVFHTASPFYHDVTDPKAELLDPAVKGTLNVLNSCAKSQS 120
Query: 124 IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAK 183
I+RVVLTSS+AAV GKPRTPDVVVDETWF+D + CK+S+LWY LSKTLAEDAAWKF K
Sbjct: 121 IRRVVLTSSIAAVAYNGKPRTPDVVVDETWFTDADFCKESKLWYVLSKTLAEDAAWKFVK 180
Query: 184 EKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQA 243
EK ID+VTINPAMVIGPLLQPTLNTSAAAVL++IKGA+T+PN +FGW+NVKDVANAHIQA
Sbjct: 181 EKGIDMVTINPAMVIGPLLQPTLNTSAAAVLNVIKGARTFPNASFGWINVKDVANAHIQA 240
Query: 244 FEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEK 281
FE+PSA+GRYCLVERV+H+SE+V I++ELYP QLPEK
Sbjct: 241 FEIPSASGRYCLVERVAHFSEVVRILQELYPGLQLPEK 278
|
Source: Prunus mume Species: Prunus mume Genus: Prunus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|308943767|gb|ADO51749.1| cinnamyl alcohol dehydrogenase [Camellia sinensis] | Back alignment and taxonomy information |
|---|
Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust.
Identities = 224/276 (81%), Positives = 251/276 (90%)
Query: 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLF 65
+ GK VCVTGASGYIASWLVKLLL RGYTVKASVRDP+DPKKT+HLLAL+GA ERL L
Sbjct: 2 SGVGKTVCVTGASGYIASWLVKLLLQRGYTVKASVRDPSDPKKTQHLLALEGAKERLHLT 61
Query: 66 KANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIK 125
KANLLEEG FDS+VDGC+GV HTASPFYHD KDPQVEL+DPA+KGTLNVL SCAK PS+K
Sbjct: 62 KANLLEEGCFDSLVDGCEGVFHTASPFYHDVKDPQVELIDPALKGTLNVLGSCAKNPSVK 121
Query: 126 RVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK 185
RVVLTSS+AAV G+PR PDVVVDE+WFSDPE CKQ++LWY LSKTLAEDAAWKF K K
Sbjct: 122 RVVLTSSVAAVAFNGRPRAPDVVVDESWFSDPEFCKQNKLWYVLSKTLAEDAAWKFTKGK 181
Query: 186 SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFE 245
ID+VTINPAMV+GPLLQPTLNTSAAA+L++I G+QT+PN TFGWVNVKDVANAHIQAFE
Sbjct: 182 GIDMVTINPAMVVGPLLQPTLNTSAAAILNVINGSQTFPNSTFGWVNVKDVANAHIQAFE 241
Query: 246 VPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEK 281
+PSANGRYCLVE V+HYSE+V I++EL+PAFQLPEK
Sbjct: 242 IPSANGRYCLVESVAHYSEVVKILQELFPAFQLPEK 277
|
Source: Camellia sinensis Species: Camellia sinensis Genus: Camellia Family: Theaceae Order: Ericales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297847514|ref|XP_002891638.1| hypothetical protein ARALYDRAFT_314503 [Arabidopsis lyrata subsp. lyrata] gi|297337480|gb|EFH67897.1| hypothetical protein ARALYDRAFT_314503 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 219/272 (80%), Positives = 246/272 (90%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69
K VCVTGASGYIASW+VKLLL RGYTVKASVRDPNDP+KT HLLAL+GA ERL+LFKANL
Sbjct: 478 KTVCVTGASGYIASWIVKLLLLRGYTVKASVRDPNDPRKTEHLLALEGAEERLKLFKANL 537
Query: 70 LEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVL 129
LEEGSFDS +DGC+GV HTASPFYHD KDPQ EL+DPAVKGT+NVL+SC K S+KRVVL
Sbjct: 538 LEEGSFDSAIDGCEGVFHTASPFYHDVKDPQAELIDPAVKGTINVLSSCLKTSSVKRVVL 597
Query: 130 TSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDL 189
TSS+AAV G PRTP+ +VDETWF+DP+ C+ S+LWY LSKTLAE+AAWKFAKE + L
Sbjct: 598 TSSIAAVAFNGMPRTPETIVDETWFADPDYCRASKLWYVLSKTLAENAAWKFAKENDLQL 657
Query: 190 VTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPSA 249
V+INPAMVIGPLLQPTLNTSAAAVLSLIKGAQT+PN TFGWVNVKDVANAHIQAFE P+A
Sbjct: 658 VSINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTFPNATFGWVNVKDVANAHIQAFENPTA 717
Query: 250 NGRYCLVERVSHYSEIVNIIRELYPAFQLPEK 281
+GRYCLVERV+HYSE+VNI+ +LYP FQLPEK
Sbjct: 718 DGRYCLVERVAHYSEVVNILHDLYPDFQLPEK 749
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|12325359|gb|AAG52618.1|AC024261_5 cinnamyl alcohol dehydrogenase, putative; 82967-79323 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 220/272 (80%), Positives = 246/272 (90%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69
K VCVTGASGYIASW+VKLLL RGYTVKASVRDPNDP+KT HLLAL+GA ERL+LFKANL
Sbjct: 491 KTVCVTGASGYIASWIVKLLLLRGYTVKASVRDPNDPRKTEHLLALEGAEERLKLFKANL 550
Query: 70 LEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVL 129
LEEGSFDS +DGC+GV HTASPFYHD KDPQ ELLDPAVKGT+NVL+SC K S+KRVVL
Sbjct: 551 LEEGSFDSAIDGCEGVFHTASPFYHDVKDPQAELLDPAVKGTINVLSSCLKTSSVKRVVL 610
Query: 130 TSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDL 189
TSS+AAV G PRTP+ +VDETWF+DP+ C+ S+LWY LSKTLAE+AAWKFAKE ++ L
Sbjct: 611 TSSIAAVAFNGMPRTPETIVDETWFADPDYCRASKLWYVLSKTLAENAAWKFAKENNLQL 670
Query: 190 VTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPSA 249
V+INPAMVIGPLLQPTLNTSAAAVLSLIKGAQT+PN TFGWVNVKDVANAHIQAFE P A
Sbjct: 671 VSINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTFPNATFGWVNVKDVANAHIQAFENPDA 730
Query: 250 NGRYCLVERVSHYSEIVNIIRELYPAFQLPEK 281
+GRYCLVERV+HYSE+VNI+ +LYP FQLPEK
Sbjct: 731 DGRYCLVERVAHYSEVVNILHDLYPDFQLPEK 762
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|1143445|emb|CAA61275.1| cinnamyl alcohol dehydrogenase [Eucalyptus gunnii] | Back alignment and taxonomy information |
|---|
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 226/279 (81%), Positives = 248/279 (88%)
Query: 3 SVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERL 62
S A AGKVVCVTGAS YIASWLVKLLL RGYTVKASVRDPNDPKKT HLL LDGA +RL
Sbjct: 2 SAAGGAGKVVCVTGASRYIASWLVKLLLQRGYTVKASVRDPNDPKKTEHLLGLDGAKDRL 61
Query: 63 QLFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFP 122
QLFKANLLEEGSFD IV+GC GV HTASPFYHD KDPQ ELLDPAVKGTLNVL SC+K P
Sbjct: 62 QLFKANLLEEGSFDPIVEGCAGVFHTASPFYHDVKDPQAELLDPAVKGTLNVLKSCSKAP 121
Query: 123 SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFA 182
S++RVVLTSSMAAV +PRTP+VVVDE+WFSDP++C+Q+ WY LSKTLAEDAAWKF
Sbjct: 122 SLQRVVLTSSMAAVAYNRQPRTPEVVVDESWFSDPDLCRQTNAWYVLSKTLAEDAAWKFV 181
Query: 183 KEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQ 242
KEK ID+VTINPAMVIGPLLQPTLNTSAAA+ +LI GA T+PN +FGWVNVKDVANAHI
Sbjct: 182 KEKGIDMVTINPAMVIGPLLQPTLNTSAAAIGNLINGAPTFPNASFGWVNVKDVANAHIL 241
Query: 243 AFEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEK 281
AFEVPSA+GRYCLVER++HYSEIV I+RELYP+ QLPEK
Sbjct: 242 AFEVPSASGRYCLVERIAHYSEIVRILRELYPSAQLPEK 280
|
Source: Eucalyptus gunnii Species: Eucalyptus gunnii Genus: Eucalyptus Family: Myrtaceae Order: Myrtales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|408777393|gb|AFU90744.1| cinnamyl alcohol dehydrogenase [Punica granatum] | Back alignment and taxonomy information |
|---|
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 219/275 (79%), Positives = 248/275 (90%)
Query: 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFK 66
AGK+VCVTGASGYIASWLVKLLL RGYTVKASVRDPNDP+KT HL +LDGA ERLQL+K
Sbjct: 5 GAGKIVCVTGASGYIASWLVKLLLQRGYTVKASVRDPNDPRKTEHLFSLDGAKERLQLYK 64
Query: 67 ANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKR 126
ANLLEEGSFD IVDGC GV HTASPFYHD KDP+ EL+DPA+KGTLNVL SCAK SI+R
Sbjct: 65 ANLLEEGSFDPIVDGCAGVFHTASPFYHDVKDPEAELIDPALKGTLNVLKSCAKVSSIQR 124
Query: 127 VVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKS 186
VVLTSS+AAV GKPRTPDVVVDETWFS PE C+++++WY LSKTLAEDAAWKF KEK
Sbjct: 125 VVLTSSVAAVAYNGKPRTPDVVVDETWFSSPEFCRENKMWYVLSKTLAEDAAWKFVKEKG 184
Query: 187 IDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEV 246
ID+V INPAMVIGPLLQPTLNTSAAA+L++I GA+T+PN +FGWVNVKDVANAH+QAFE+
Sbjct: 185 IDMVAINPAMVIGPLLQPTLNTSAAAILNIINGAETFPNASFGWVNVKDVANAHVQAFEI 244
Query: 247 PSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEK 281
PSA+GR+CLVERV+HYSE+V I+RELYP +LPEK
Sbjct: 245 PSASGRHCLVERVAHYSEVVKILRELYPQIKLPEK 279
|
Source: Punica granatum Species: Punica granatum Genus: Punica Family: Lythraceae Order: Myrtales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 281 | ||||||
| TAIR|locus:2150315 | 326 | AT5G19440 [Arabidopsis thalian | 0.971 | 0.837 | 0.816 | 3.6e-121 | |
| TAIR|locus:2033904 | 325 | AT1G51410 [Arabidopsis thalian | 0.967 | 0.836 | 0.808 | 4.1e-120 | |
| TAIR|locus:2012315 | 322 | AT1G09510 [Arabidopsis thalian | 0.982 | 0.857 | 0.605 | 5.4e-86 | |
| TAIR|locus:2012250 | 369 | AT1G09480 [Arabidopsis thalian | 0.946 | 0.720 | 0.601 | 1.7e-84 | |
| TAIR|locus:2012265 | 322 | AT1G09490 [Arabidopsis thalian | 0.967 | 0.844 | 0.577 | 6.4e-83 | |
| TAIR|locus:2012280 | 325 | AT1G09500 [Arabidopsis thalian | 0.957 | 0.827 | 0.592 | 5.8e-82 | |
| TAIR|locus:2033394 | 319 | AT1G66800 [Arabidopsis thalian | 0.932 | 0.821 | 0.586 | 4.8e-78 | |
| TAIR|locus:2200427 | 344 | CCR1 "cinnamoyl coa reductase | 0.964 | 0.787 | 0.512 | 1.8e-69 | |
| TAIR|locus:2171258 | 324 | AT5G58490 [Arabidopsis thalian | 0.953 | 0.827 | 0.5 | 2.8e-66 | |
| TAIR|locus:2122093 | 326 | DRL1 "dihydroflavonol 4-reduct | 0.971 | 0.837 | 0.494 | 4.5e-66 |
| TAIR|locus:2150315 AT5G19440 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1192 (424.7 bits), Expect = 3.6e-121, P = 3.6e-121
Identities = 223/273 (81%), Positives = 251/273 (91%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKAN 68
GKVVCVTGASGYIASWLVK LLSRGYTVKASVRDP+DPKKT+HL++L+GA ERL LFKA+
Sbjct: 7 GKVVCVTGASGYIASWLVKFLLSRGYTVKASVRDPSDPKKTQHLVSLEGAKERLHLFKAD 66
Query: 69 LLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVV 128
LLE+GSFDS +DGC GV HTASPF++DAKDPQ EL+DPAVKGTLNVLNSCAK S+KRVV
Sbjct: 67 LLEQGSFDSAIDGCHGVFHTASPFFNDAKDPQAELIDPAVKGTLNVLNSCAKASSVKRVV 126
Query: 129 LTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSID 188
+TSSMAAV GKPRTPDV VDETWFSDPE+C+ S++WY LSKTLAEDAAWK AKEK +D
Sbjct: 127 VTSSMAAVGYNGKPRTPDVTVDETWFSDPELCEASKMWYVLSKTLAEDAAWKLAKEKGLD 186
Query: 189 LVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS 248
+VTINPAMVIGPLLQPTLNTSAAA+L+LI GA+T+PN++FGWVNVKDVANAHIQAFEVPS
Sbjct: 187 IVTINPAMVIGPLLQPTLNTSAAAILNLINGAKTFPNLSFGWVNVKDVANAHIQAFEVPS 246
Query: 249 ANGRYCLVERVSHYSEIVNIIRELYPAFQLPEK 281
ANGRYCLVERV H+SEIVNI+RELYP LPE+
Sbjct: 247 ANGRYCLVERVVHHSEIVNILRELYPNLPLPER 279
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| TAIR|locus:2033904 AT1G51410 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1182 (421.1 bits), Expect = 4.1e-120, P = 4.1e-120
Identities = 220/272 (80%), Positives = 246/272 (90%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69
K VCVTGASGYIASW+VKLLL RGYTVKASVRDPNDP+KT HLLAL+GA ERL+LFKANL
Sbjct: 7 KTVCVTGASGYIASWIVKLLLLRGYTVKASVRDPNDPRKTEHLLALEGAEERLKLFKANL 66
Query: 70 LEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVL 129
LEEGSFDS +DGC+GV HTASPFYHD KDPQ ELLDPAVKGT+NVL+SC K S+KRVVL
Sbjct: 67 LEEGSFDSAIDGCEGVFHTASPFYHDVKDPQAELLDPAVKGTINVLSSCLKTSSVKRVVL 126
Query: 130 TSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDL 189
TSS+AAV G PRTP+ +VDETWF+DP+ C+ S+LWY LSKTLAE+AAWKFAKE ++ L
Sbjct: 127 TSSIAAVAFNGMPRTPETIVDETWFADPDYCRASKLWYVLSKTLAENAAWKFAKENNLQL 186
Query: 190 VTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPSA 249
V+INPAMVIGPLLQPTLNTSAAAVLSLIKGAQT+PN TFGWVNVKDVANAHIQAFE P A
Sbjct: 187 VSINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTFPNATFGWVNVKDVANAHIQAFENPDA 246
Query: 250 NGRYCLVERVSHYSEIVNIIRELYPAFQLPEK 281
+GRYCLVERV+HYSE+VNI+ +LYP FQLPEK
Sbjct: 247 DGRYCLVERVAHYSEVVNILHDLYPDFQLPEK 278
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| TAIR|locus:2012315 AT1G09510 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 860 (307.8 bits), Expect = 5.4e-86, P = 5.4e-86
Identities = 167/276 (60%), Positives = 207/276 (75%)
Query: 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLF 65
A GK+VCVTGASGY+ASW+VKLLL RGYTV+A+VRDP+D KKT HLLALDGA E+L+LF
Sbjct: 2 ADGGKMVCVTGASGYVASWIVKLLLLRGYTVRATVRDPSDEKKTEHLLALDGAKEKLKLF 61
Query: 66 KANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIK 125
KA+LLEEGSF+ ++GCD V HTASP DPQ+EL+DPAVKGTLNVL +CAK S+K
Sbjct: 62 KADLLEEGSFEQAIEGCDAVFHTASPVSLTVTDPQIELIDPAVKGTLNVLKTCAKVSSVK 121
Query: 126 RVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK 185
RV++TSSMAAVL P+ +VDE+ FSDP C + +LWY LSKTLAED AW+FAKEK
Sbjct: 122 RVIVTSSMAAVLFREPTLGPNDLVDESCFSDPNFCTEKKLWYALSKTLAEDEAWRFAKEK 181
Query: 186 SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFE 245
+DLV INP +V+GPLL+P+L S ++ LI G + N F V+V+DVA AHI+AFE
Sbjct: 182 GLDLVVINPGLVLGPLLKPSLTFSVNVIVELITGKDNFINKDFRLVDVRDVALAHIKAFE 241
Query: 246 VPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEK 281
PSANGRY + V ++I I+RE +P L K
Sbjct: 242 TPSANGRYIIEGPVVTINDIEKILREFFPDLNLGNK 277
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| TAIR|locus:2012250 AT1G09480 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
Identities = 160/266 (60%), Positives = 204/266 (76%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKAN 68
GK+VCVTGASGYIASW+VKLLL RGYTVKA+VRD D KKT HLLALDGA ERL+LFKA+
Sbjct: 52 GKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKAD 111
Query: 69 LLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVV 128
LLEE SF+ ++GCD V HTASP + KDPQ EL+DPA+KGT+NVLN+C + PS++RV+
Sbjct: 112 LLEESSFEQAIEGCDAVFHTASPVFFTVKDPQTELIDPALKGTMNVLNTCKETPSVRRVI 171
Query: 129 LTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSID 188
LTSS AAVL P VVDET+FSDP +C++++ WYPLSK LAE+AAW+FAK+ ID
Sbjct: 172 LTSSTAAVLFRQPPVEASDVVDETFFSDPSLCRETKNWYPLSKILAENAAWEFAKDNGID 231
Query: 189 LVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS 248
+V +NP + GPLLQPTLN S ++ I G + + + +V+V+DVA AHI+A E PS
Sbjct: 232 MVVLNPGFIFGPLLQPTLNFSVELIVDFINGKNPFNSRFYRFVDVRDVALAHIKALETPS 291
Query: 249 ANGRYCLVERVSHYSEIVNIIRELYP 274
ANGRY + + S+I++I+REL P
Sbjct: 292 ANGRYIIDGPIMSVSDIIDILRELLP 317
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| TAIR|locus:2012265 AT1G09490 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 831 (297.6 bits), Expect = 6.4e-83, P = 6.4e-83
Identities = 157/272 (57%), Positives = 202/272 (74%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKAN 68
GKVVCVTGASGYIASW+VKLLL RGYTV A+VRDP D KKT HLLALDGA ERL+LFKA+
Sbjct: 5 GKVVCVTGASGYIASWIVKLLLLRGYTVNATVRDPKDKKKTEHLLALDGAKERLKLFKAD 64
Query: 69 LLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVV 128
LLEE SFD +DGCD V HTASP DPQ EL+DPA+KGT+NVLN+C + S+KRV+
Sbjct: 65 LLEESSFDQAIDGCDAVFHTASPVLFTVTDPQTELIDPALKGTINVLNTCKQVSSVKRVI 124
Query: 129 LTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSID 188
LTSS AAVL+ P P+ +VDET+FSDP +C++++ WY LSK LAE+AAW+FAK+ ID
Sbjct: 125 LTSSTAAVLSRQPPIGPNDLVDETFFSDPSLCRETKNWYSLSKILAENAAWQFAKDNGID 184
Query: 189 LVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS 248
+V +NP + GPLLQPTLN S ++ I G + + + +V+DVA HI+A E PS
Sbjct: 185 MVVLNPGFICGPLLQPTLNMSVELIVDFINGKNPFNKRYYRFSDVRDVALVHIKALETPS 244
Query: 249 ANGRYCLVERVSHYSEIVNIIRELYPAFQLPE 280
ANGRY + ++I++I+R+L+P + +
Sbjct: 245 ANGRYIIDGPNMSVNDIIDILRKLFPDLSIAD 276
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| TAIR|locus:2012280 AT1G09500 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 822 (294.4 bits), Expect = 5.8e-82, P = 5.8e-82
Identities = 160/270 (59%), Positives = 202/270 (74%)
Query: 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLF 65
A GKVVCVTGASGYIASW+VKLLL RGYT+ A+VRDP D KKT HLLALDGA ERL+LF
Sbjct: 2 ADGGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLF 61
Query: 66 KANLLEEGSFDSIVDGCDGVCHTASPFYHDAK-DPQVELLDPAVKGTLNVLNSCAKFPSI 124
KA+LL+EGSF+ +DGC+ V HTASP K DPQVEL++PAV GT+NVL +C K S+
Sbjct: 62 KADLLDEGSFELAIDGCETVFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSV 121
Query: 125 KRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE 184
KRV+LTSSMAAVL P+ VVDET+F++P ++ + WY LSKTLAEDAAW+FAK+
Sbjct: 122 KRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEERKQWYVLSKTLAEDAAWRFAKD 181
Query: 185 KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAF 244
IDL+ +NP +V GP+LQPTLN S A ++ L+KG + +V+V+DVA AH++A
Sbjct: 182 NEIDLIVLNPGLVTGPILQPTLNFSVAVIVELMKGKNPFNTTHHRFVDVRDVALAHVKAL 241
Query: 245 EVPSANGRYCLVERVSHYSEIVNIIRELYP 274
E PSANGRY + V +I N++RE +P
Sbjct: 242 ETPSANGRYIIDGPVVTIKDIENVLREFFP 271
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| TAIR|locus:2033394 AT1G66800 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 785 (281.4 bits), Expect = 4.8e-78, P = 4.8e-78
Identities = 156/266 (58%), Positives = 196/266 (73%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKAN 68
GKVVCVTGASGYIASW+VKLLL RGYTV+A+VR+P D KKT HLL L+GASERL+LFK++
Sbjct: 5 GKVVCVTGASGYIASWIVKLLLLRGYTVRATVRNPMDTKKTNHLLTLEGASERLKLFKSD 64
Query: 69 LLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVV 128
LLEEGSFD ++GCDGV HTASP DPQ E++DPAV GTLNVL +CAK S+KRV+
Sbjct: 65 LLEEGSFDQAIEGCDGVFHTASPVSLTVTDPQTEMIDPAVNGTLNVLRTCAKVSSVKRVI 124
Query: 129 LTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSID 188
+TSS AA L+ P+ VVDET F+D V + WY SKTLAE+ AW+FAKE ID
Sbjct: 125 VTSSTAATLSIN----PNDVVDETVFTDLSVYLAMKAWYGYSKTLAEETAWRFAKENGID 180
Query: 189 LVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS 248
LV +NP VIGP+LQPTLN S ++ LI G + + +++V+DV+ AHI+AFEVPS
Sbjct: 181 LVVMNPGNVIGPVLQPTLNYSVEVIVDLINGKNPSNSFYYRFMDVRDVSLAHIKAFEVPS 240
Query: 249 ANGRYCLVERVSHYSEIVNIIRELYP 274
A+GRY L + +I ++ EL+P
Sbjct: 241 ASGRYILADPDVTMKDIQKLLHELFP 266
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| TAIR|locus:2200427 CCR1 "cinnamoyl coa reductase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 704 (252.9 bits), Expect = 1.8e-69, P = 1.8e-69
Identities = 143/279 (51%), Positives = 193/279 (69%)
Query: 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQ 63
VA+ AGK VCVTGA GYIASW+VK+LL RGYTVK +VR+P+DPK T HL L+G ERL
Sbjct: 5 VASPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNT-HLRELEGGKERLI 63
Query: 64 LFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS 123
L KA+L + + + +DGCDGV HTASP DP+ ++++PAV G V+N+ A+
Sbjct: 64 LCKADLQDYEALKAAIDGCDGVFHTASPV---TDDPE-QMVEPAVNGAKFVINAAAE-AK 118
Query: 124 IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAK 183
+KRVV+TSS+ AV R P+ VVDE+ +SD + CK ++ WY K +AE AAW+ AK
Sbjct: 119 VKRVVITSSIGAVYMDPN-RDPEAVVDESCWSDLDFCKNTKNWYCYGKMVAEQAAWETAK 177
Query: 184 EKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKG-AQTYPNVTFGWVNVKDVANAHIQ 242
EK +DLV +NP +V+GP LQPT+N S VL + G A+TY N+T +V+V+DVA AH+
Sbjct: 178 EKGVDLVVLNPVLVLGPPLQPTINASLYHVLKYLTGSAKTYANLTQAYVDVRDVALAHVL 237
Query: 243 AFEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEK 281
+E PSA+GRY L E H E+V I+ +L+P + LP K
Sbjct: 238 VYEAPSASGRYLLAESARHRGEVVEILAKLFPEYPLPTK 276
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| TAIR|locus:2171258 AT5G58490 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
Identities = 137/274 (50%), Positives = 192/274 (70%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69
+VVCVTGASG I SWLV LL RGY+V A+V++ D K+T+HL L+GA+ RL LF+ +L
Sbjct: 7 EVVCVTGASGCIGSWLVHQLLLRGYSVHATVKNLQDEKETKHLEGLEGAATRLHLFEMDL 66
Query: 70 LEEGSFDSIVDGCDGVCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVV 128
L+ + + ++GC GV H ASP D +DPQ +LLDPAVKGT+NVL + AK S+KRVV
Sbjct: 67 LQYDTVSAAINGCSGVFHLASPCIVDEVQDPQKQLLDPAVKGTINVLTA-AKEASVKRVV 125
Query: 129 LTSSMAAVLNTGKPRTP-DVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSI 187
+TSS++A+ T P P D + +E ++ + C+Q+ LWYPLSKTLAE AAW+FA+EK +
Sbjct: 126 VTSSISAI--TPSPNWPADKIKNEECWAAEDYCRQNGLWYPLSKTLAEKAAWEFAEEKGL 183
Query: 188 DLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA-QTYPNVTFGWVNVKDVANAHIQAFEV 246
D+V +NP V+GP++ P+LN S +L L++G +TY N G V+ KDVA AHI +E
Sbjct: 184 DVVVVNPGTVMGPVIPPSLNASMHMLLRLLQGCTETYENFFMGSVHFKDVALAHILVYED 243
Query: 247 PSANGRYCLVERVSHYSEIVNIIRELYPAFQLPE 280
P + GR+ VE +SHY + V + ELYP + +P+
Sbjct: 244 PYSKGRHLCVEAISHYGDFVAKVAELYPNYNVPK 277
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| TAIR|locus:2122093 DRL1 "dihydroflavonol 4-reductase-like1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
Identities = 137/277 (49%), Positives = 187/277 (67%)
Query: 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFK 66
A GKV CVTGASG++ASWLVK LL GY V +VRDP + KK HL L+GA ERL+L K
Sbjct: 4 AKGKV-CVTGASGFLASWLVKRLLLEGYEVIGTVRDPGNEKKLAHLWKLEGAKERLRLVK 62
Query: 67 ANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKR 126
A+L+EEGSFD+ + GC GV HTASP +P+ E+L PA++GTLNVL SC K PS+KR
Sbjct: 63 ADLMEEGSFDNAIMGCQGVFHTASPVLKPTSNPEEEILRPAIEGTLNVLRSCRKNPSLKR 122
Query: 127 VVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKS 186
VVLTSS + V P + +DE+ ++ E+CK+ ++WY LSKTLAE AAWKF++E
Sbjct: 123 VVLTSSSSTV-RIRDDFDPKIPLDESIWTSVELCKRFQVWYALSKTLAEQAAWKFSEENG 181
Query: 187 IDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKG-AQTYP-NVTFGWVNVKDVANAHIQAF 244
IDLVT+ P+ ++GP L P L ++A+ VL L+KG + + + G+V++ DVA HI F
Sbjct: 182 IDLVTVLPSFLVGPSLPPDLCSTASDVLGLLKGETEKFQWHGQMGYVHIDDVARTHIVVF 241
Query: 245 EVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEK 281
E +A GRY V E+V+ + YP+ +P++
Sbjct: 242 EHEAAQGRYICSSNVISLEELVSFLSARYPSLPIPKR 278
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | CCRL4 | cinnamoyl CoA reductase-like protein (EC-1.1.1.195) (326 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | CYP703A4 | cytochrome P450 (487 aa) | • | 0.690 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 281 | |||
| PLN02662 | 322 | PLN02662, PLN02662, cinnamyl-alcohol dehydrogenase | 0.0 | |
| cd08958 | 293 | cd08958, FR_SDR_e, flavonoid reductase (FR), exten | 1e-142 | |
| PLN02986 | 322 | PLN02986, PLN02986, cinnamyl-alcohol dehydrogenase | 1e-120 | |
| PLN02989 | 325 | PLN02989, PLN02989, cinnamyl-alcohol dehydrogenase | 1e-114 | |
| PLN02214 | 342 | PLN02214, PLN02214, cinnamoyl-CoA reductase | 1e-88 | |
| cd05227 | 301 | cd05227, AR_SDR_e, aldehyde reductase, extended (e | 5e-86 | |
| PLN02650 | 351 | PLN02650, PLN02650, dihydroflavonol-4-reductase | 1e-80 | |
| cd05193 | 295 | cd05193, AR_like_SDR_e, aldehyde reductase, flavon | 7e-78 | |
| PLN00198 | 338 | PLN00198, PLN00198, anthocyanidin reductase; Provi | 1e-68 | |
| PLN02896 | 353 | PLN02896, PLN02896, cinnamyl-alcohol dehydrogenase | 1e-67 | |
| PLN02583 | 297 | PLN02583, PLN02583, cinnamoyl-CoA reductase | 2e-52 | |
| PLN02686 | 367 | PLN02686, PLN02686, cinnamoyl-CoA reductase | 4e-42 | |
| cd05228 | 318 | cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr | 1e-38 | |
| COG0451 | 314 | COG0451, WcaG, Nucleoside-diphosphate-sugar epimer | 2e-33 | |
| TIGR03466 | 328 | TIGR03466, HpnA, hopanoid-associated sugar epimera | 6e-27 | |
| pfam01370 | 233 | pfam01370, Epimerase, NAD dependent epimerase/dehy | 2e-19 | |
| cd08946 | 200 | cd08946, SDR_e, extended (e) SDRs | 4e-18 | |
| cd05232 | 303 | cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, | 7e-17 | |
| pfam01073 | 280 | pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydr | 1e-15 | |
| cd05257 | 316 | cd05257, Arna_like_SDR_e, Arna decarboxylase_like, | 4e-15 | |
| cd05263 | 293 | cd05263, MupV_like_SDR_e, Pseudomonas fluorescens | 3e-14 | |
| cd05243 | 203 | cd05243, SDR_a5, atypical (a) SDRs, subgroup 5 | 6e-14 | |
| cd05241 | 331 | cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid d | 4e-13 | |
| cd09813 | 335 | cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD | 3e-11 | |
| TIGR04180 | 297 | TIGR04180, EDH_00030, NAD dependent epimerase/dehy | 1e-10 | |
| cd05256 | 304 | cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-e | 2e-10 | |
| cd05271 | 273 | cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ub | 6e-09 | |
| cd09811 | 354 | cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD | 8e-08 | |
| cd05265 | 250 | cd05265, SDR_a1, atypical (a) SDRs, subgroup 1 | 1e-07 | |
| pfam13460 | 182 | pfam13460, NAD_binding_10, NADH(P)-binding | 1e-07 | |
| cd05245 | 293 | cd05245, SDR_a2, atypical (a) SDRs, subgroup 2 | 1e-07 | |
| cd05251 | 242 | cd05251, NmrA_like_SDR_a, NmrA (a transcriptional | 2e-07 | |
| cd05234 | 305 | cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, | 3e-07 | |
| COG0702 | 275 | COG0702, COG0702, Predicted nucleoside-diphosphate | 1e-06 | |
| cd05244 | 207 | cd05244, BVR-B_like_SDR_a, biliverdin IX beta redu | 2e-06 | |
| cd05273 | 328 | cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP- | 3e-06 | |
| cd05230 | 305 | cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase | 4e-06 | |
| pfam07993 | 245 | pfam07993, NAD_binding_4, Male sterility protein | 6e-06 | |
| cd05252 | 336 | cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydrata | 6e-06 | |
| pfam05368 | 232 | pfam05368, NmrA, NmrA-like family | 9e-06 | |
| cd05264 | 300 | cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase | 1e-05 | |
| cd05258 | 337 | cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, e | 3e-05 | |
| PRK05653 | 246 | PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) | 3e-05 | |
| cd05269 | 272 | cd05269, TMR_SDR_a, triphenylmethane reductase (TM | 4e-05 | |
| COG3320 | 382 | COG3320, COG3320, Putative dehydrogenase domain of | 4e-05 | |
| cd05238 | 305 | cd05238, Gne_like_SDR_e, Escherichia coli Gne (a n | 4e-05 | |
| cd05253 | 332 | cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimera | 5e-05 | |
| PLN00141 | 251 | PLN00141, PLN00141, Tic62-NAD(P)-related group II | 5e-05 | |
| cd05242 | 296 | cd05242, SDR_a8, atypical (a) SDRs, subgroup 8 | 6e-05 | |
| cd05240 | 306 | cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase | 1e-04 | |
| cd05247 | 323 | cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, | 1e-04 | |
| cd05229 | 302 | cd05229, SDR_a3, atypical (a) SDRs, subgroup 3 | 2e-04 | |
| cd05280 | 325 | cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putativ | 3e-04 | |
| cd05262 | 291 | cd05262, SDR_a7, atypical (a) SDRs, subgroup 7 | 3e-04 | |
| COG1087 | 329 | COG1087, GalE, UDP-glucose 4-epimerase [Cell envel | 3e-04 | |
| cd05260 | 316 | cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase | 4e-04 | |
| cd05374 | 248 | cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxyster | 4e-04 | |
| cd05266 | 251 | cd05266, SDR_a4, atypical (a) SDRs, subgroup 4 | 4e-04 | |
| PLN02657 | 390 | PLN02657, PLN02657, 3,8-divinyl protochlorophyllid | 7e-04 | |
| PLN02240 | 352 | PLN02240, PLN02240, UDP-glucose 4-epimerase | 8e-04 | |
| cd05226 | 176 | cd05226, SDR_e_a, Extended (e) and atypical (a) SD | 8e-04 | |
| TIGR01179 | 328 | TIGR01179, galE, UDP-glucose-4-epimerase GalE | 8e-04 | |
| cd08953 | 436 | cd08953, KR_2_SDR_x, ketoreductase (KR), subgroup | 0.001 | |
| COG2910 | 211 | COG2910, COG2910, Putative NADH-flavin reductase [ | 0.001 | |
| cd05354 | 235 | cd05354, SDR_c7, classical (c) SDR, subgroup 7 | 0.001 | |
| cd05235 | 290 | cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | 0.002 | |
| cd08932 | 223 | cd08932, HetN_like_SDR_c, HetN oxidoreductase-like | 0.003 | |
| cd08957 | 307 | cd08957, WbmH_like_SDR_e, Bordetella bronchiseptic | 0.003 | |
| COG1089 | 345 | COG1089, Gmd, GDP-D-mannose dehydratase [Cell enve | 0.004 | |
| PLN02695 | 370 | PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase | 0.004 |
| >gnl|CDD|178268 PLN02662, PLN02662, cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Score = 582 bits (1501), Expect = 0.0
Identities = 223/276 (80%), Positives = 246/276 (89%)
Query: 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLF 65
+ GKVVCVTGASGYIASWLVKLLL RGYTVKA+VRDPNDPKKT HLLALDGA ERL LF
Sbjct: 1 SGEGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLF 60
Query: 66 KANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIK 125
KANLLEEGSFDS+VDGC+GV HTASPFYHD DPQ EL+DPAVKGTLNVL SCAK PS+K
Sbjct: 61 KANLLEEGSFDSVVDGCEGVFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVK 120
Query: 126 RVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK 185
RVV+TSSMAAV GKP TPDVVVDETWFSDP C++S+LWY LSKTLAE+AAWKFAKE
Sbjct: 121 RVVVTSSMAAVAYNGKPLTPDVVVDETWFSDPAFCEESKLWYVLSKTLAEEAAWKFAKEN 180
Query: 186 SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFE 245
ID+VTINPAMVIGPLLQPTLNTSA A+L+LI GAQT+PN ++ WV+V+DVANAHIQAFE
Sbjct: 181 GIDMVTINPAMVIGPLLQPTLNTSAEAILNLINGAQTFPNASYRWVDVRDVANAHIQAFE 240
Query: 246 VPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEK 281
+PSA+GRYCLVERV HYSE+V I+ ELYP QLPEK
Sbjct: 241 IPSASGRYCLVERVVHYSEVVKILHELYPTLQLPEK 276
|
Length = 322 |
| >gnl|CDD|187661 cd08958, FR_SDR_e, flavonoid reductase (FR), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 401 bits (1033), Expect = e-142
Identities = 154/271 (56%), Positives = 202/271 (74%), Gaps = 2/271 (0%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
VCVTGASG+I SWLVK LL RGYTV+A+VRDP D KK HLL L+GA ERL+LFKA+LL+
Sbjct: 1 VCVTGASGFIGSWLVKRLLQRGYTVRATVRDPGDEKKVAHLLELEGAKERLKLFKADLLD 60
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131
GSFD+ +DGCDGV H ASP D++DP+ E+++PAVKGTLNVL +CAK S+KRVV TS
Sbjct: 61 YGSFDAAIDGCDGVFHVASPVDFDSEDPEEEMIEPAVKGTLNVLEACAKAKSVKRVVFTS 120
Query: 132 SMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVT 191
S+AAV R VVDE+ +SD + CK+++LWY LSKTLAE AAW+FA+E +DLVT
Sbjct: 121 SVAAV-VWNPNRGEGKVVDESCWSDLDFCKKTKLWYALSKTLAEKAAWEFAEENGLDLVT 179
Query: 192 INPAMVIGPLLQPTLNTSAAAVLSLIKGA-QTYPNVTFGWVNVKDVANAHIQAFEVPSAN 250
+NP++V+GP LQP+LN+S+ +LSL+KG + Y N + V+V DVA+AHI +E PSA+
Sbjct: 180 VNPSLVVGPFLQPSLNSSSQLILSLLKGNAEMYQNGSLALVHVDDVADAHILLYEKPSAS 239
Query: 251 GRYCLVERVSHYSEIVNIIRELYPAFQLPEK 281
GRY V E+ ++ + YP + +P K
Sbjct: 240 GRYICSSHVVTRPELAALLAKKYPQYNIPTK 270
|
This subgroup contains FRs of the extended SDR-type and related proteins. These FRs act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites; they have the characteristic active site triad of the SDRs (though not the upstream active site Asn) and a NADP-binding motif that is very similar to the typical extended SDR motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|178567 PLN02986, PLN02986, cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Score = 347 bits (890), Expect = e-120
Identities = 161/268 (60%), Positives = 206/268 (76%)
Query: 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFK 66
GK+VCVTGASGYIASW+VKLLL RGYTVKA+VRD D KKT HLLALDGA ERL+LFK
Sbjct: 3 GGGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFK 62
Query: 67 ANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKR 126
A+LLEE SF+ ++GCD V HTASP + KDPQ EL+DPA+KGT+NVLN+C + PS+KR
Sbjct: 63 ADLLEESSFEQAIEGCDAVFHTASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKR 122
Query: 127 VVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKS 186
V+LTSS AAVL P + VVDET+FSDP +C++++ WYPLSK LAE+AAW+FAK+
Sbjct: 123 VILTSSTAAVLFRQPPIEANDVVDETFFSDPSLCRETKNWYPLSKILAENAAWEFAKDNG 182
Query: 187 IDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEV 246
ID+V +NP + GPLLQPTLN S ++ I G + N + +V+V+DVA AHI+A E
Sbjct: 183 IDMVVLNPGFICGPLLQPTLNFSVELIVDFINGKNLFNNRFYRFVDVRDVALAHIKALET 242
Query: 247 PSANGRYCLVERVSHYSEIVNIIRELYP 274
PSANGRY + + ++I++I+REL+P
Sbjct: 243 PSANGRYIIDGPIMSVNDIIDILRELFP 270
|
Length = 322 |
| >gnl|CDD|178569 PLN02989, PLN02989, cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Score = 330 bits (848), Expect = e-114
Identities = 160/270 (59%), Positives = 202/270 (74%), Gaps = 1/270 (0%)
Query: 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLF 65
A GKVVCVTGASGYIASW+VKLLL RGYT+ A+VRDP D KKT HLLALDGA ERL+LF
Sbjct: 2 ADGGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLF 61
Query: 66 KANLLEEGSFDSIVDGCDGVCHTASPFYHDAK-DPQVELLDPAVKGTLNVLNSCAKFPSI 124
KA+LL+EGSF+ +DGC+ V HTASP K DPQVEL++PAV GT+NVL +C K S+
Sbjct: 62 KADLLDEGSFELAIDGCETVFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSV 121
Query: 125 KRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE 184
KRV+LTSSMAAVL P+ VVDET+F++P ++ + WY LSKTLAEDAAW+FAK+
Sbjct: 122 KRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEERKQWYVLSKTLAEDAAWRFAKD 181
Query: 185 KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAF 244
IDL+ +NP +V GP+LQPTLN S A ++ L+KG + +V+V+DVA AH++A
Sbjct: 182 NEIDLIVLNPGLVTGPILQPTLNFSVAVIVELMKGKNPFNTTHHRFVDVRDVALAHVKAL 241
Query: 245 EVPSANGRYCLVERVSHYSEIVNIIRELYP 274
E PSANGRY + V +I N++RE +P
Sbjct: 242 ETPSANGRYIIDGPVVTIKDIENVLREFFP 271
|
Length = 325 |
| >gnl|CDD|177862 PLN02214, PLN02214, cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Score = 267 bits (683), Expect = 1e-88
Identities = 143/279 (51%), Positives = 193/279 (69%), Gaps = 8/279 (2%)
Query: 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQ 63
VA+ AGK VCVTGA GYIASW+VK+LL RGYTVK +VR+P+DPK T HL L+G ERL
Sbjct: 5 VASPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNT-HLRELEGGKERLI 63
Query: 64 LFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS 123
L KA+L + + + +DGCDGV HTASP DP+ ++++PAV G V+N+ A+
Sbjct: 64 LCKADLQDYEALKAAIDGCDGVFHTASPV---TDDPE-QMVEPAVNGAKFVINAAAE-AK 118
Query: 124 IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAK 183
+KRVV+TSS+ AV R P+ VVDE+ +SD + CK ++ WY K +AE AAW+ AK
Sbjct: 119 VKRVVITSSIGAVY-MDPNRDPEAVVDESCWSDLDFCKNTKNWYCYGKMVAEQAAWETAK 177
Query: 184 EKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKG-AQTYPNVTFGWVNVKDVANAHIQ 242
EK +DLV +NP +V+GP LQPT+N S VL + G A+TY N+T +V+V+DVA AH+
Sbjct: 178 EKGVDLVVLNPVLVLGPPLQPTINASLYHVLKYLTGSAKTYANLTQAYVDVRDVALAHVL 237
Query: 243 AFEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEK 281
+E PSA+GRY L E H E+V I+ +L+P + LP K
Sbjct: 238 VYEAPSASGRYLLAESARHRGEVVEILAKLFPEYPLPTK 276
|
Length = 342 |
| >gnl|CDD|187538 cd05227, AR_SDR_e, aldehyde reductase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 258 bits (662), Expect = 5e-86
Identities = 111/277 (40%), Positives = 161/277 (58%), Gaps = 9/277 (3%)
Query: 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLL 70
+V VTGA+G+IAS +V+ LL GY V+ +VR + K + LL G ++RL+ + L
Sbjct: 1 LVLVTGATGFIASHIVEQLLKAGYKVRGTVRSLSKSAKLKALLKAAGYNDRLEFVIVDDL 60
Query: 71 -EEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVL 129
++D + G D V H ASPF D + +++DPAV+GTLNVL + S+KRVVL
Sbjct: 61 TAPNAWDEALKGVDYVIHVASPFPFTGPDAEDDVIDPAVEGTLNVLEAAKAAGSVKRVVL 120
Query: 130 TSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW-YPLSKTLAEDAAWKFAKE--KS 186
TSS+AAV + V +E W +D + K + L Y SKTLAE AAW+F KE
Sbjct: 121 TSSVAAVGDPTAEDPGKVFTEEDW-NDLTISKSNGLDAYIASKTLAEKAAWEFVKENKPK 179
Query: 187 IDLVTINPAMVIGPLLQPT-LNTSAAAVLSLIKG--AQTYPNVTFGWVNVKDVANAHIQA 243
+L+TINP V+GP L LN+S + L+ G PN+ FG+V+V+DVA+AH++A
Sbjct: 180 FELITINPGYVLGPSLLADELNSSNELINKLLDGKLPAIPPNLPFGYVDVRDVADAHVRA 239
Query: 244 FEVPSA-NGRYCLVERVSHYSEIVNIIRELYPAFQLP 279
E P A R+ + + EI +++RE +P P
Sbjct: 240 LESPEAAGQRFIVSAGPFSFQEIADLLREEFPQLTAP 276
|
This subgroup contains aldehyde reductase of the extended SDR-type and related proteins. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 301 |
| >gnl|CDD|178256 PLN02650, PLN02650, dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Score = 247 bits (631), Expect = 1e-80
Identities = 120/282 (42%), Positives = 181/282 (64%), Gaps = 8/282 (2%)
Query: 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQL 64
+ + VCVTGASG+I SWLV LL RGYTV+A+VRDP + KK +HLL L GA+ RL L
Sbjct: 1 MGSQKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTL 60
Query: 65 FKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSI 124
+KA+L EGSFD + GC GV H A+P ++KDP+ E++ P V G L+++ +CAK ++
Sbjct: 61 WKADLAVEGSFDDAIRGCTGVFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTV 120
Query: 125 KRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL--W-YPLSKTLAEDAAWKF 181
+R+V TSS A +N + + P V DE +SD + C++ ++ W Y +SKTLAE AAWK+
Sbjct: 121 RRIVFTSS-AGTVNVEEHQKP--VYDEDCWSDLDFCRRKKMTGWMYFVSKTLAEKAAWKY 177
Query: 182 AKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV--TFGWVNVKDVANA 239
A E +D ++I P +V+GP + ++ S LSLI G + + ++ +V++ D+ NA
Sbjct: 178 AAENGLDFISIIPTLVVGPFISTSMPPSLITALSLITGNEAHYSIIKQGQFVHLDDLCNA 237
Query: 240 HIQAFEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEK 281
HI FE P+A GRY + ++ ++RE YP + +P +
Sbjct: 238 HIFLFEHPAAEGRYICSSHDATIHDLAKMLREKYPEYNIPAR 279
|
Length = 351 |
| >gnl|CDD|187536 cd05193, AR_like_SDR_e, aldehyde reductase, flavonoid reductase, and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 237 bits (607), Expect = 7e-78
Identities = 114/276 (41%), Positives = 160/276 (57%), Gaps = 10/276 (3%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
V VTGASG++AS +V+ LL RGY V+A+VRDP+ KK HLL LD RL+L A+L +
Sbjct: 1 VLVTGASGFVASHVVEQLLERGYKVRATVRDPSKVKKVNHLLDLDAKPGRLELAVADLTD 60
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131
E SFD ++ GC GV H A+P +KDP E++ PA+ GTLN L + A S+KR VLTS
Sbjct: 61 EQSFDEVIKGCAGVFHVATPVSFSSKDPN-EVIKPAIGGTLNALKAAAAAKSVKRFVLTS 119
Query: 132 SMAAVLNTGKPRTPDVVVDETWFSDPEVC--KQSELW-YPLSKTLAEDAAWKFAKEKSID 188
S +V KP +V+DE ++ E + W Y SKTLAE AAWKFA E +ID
Sbjct: 120 SAGSV-LIPKPNVEGIVLDEKSWNLEEFDSDPKKSAWVYAASKTLAEKAAWKFADENNID 178
Query: 189 LVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV-----TFGWVNVKDVANAHIQA 243
L+T+ P + IG + +S+ +SLI G + +V+V D+ AHI
Sbjct: 179 LITVIPTLTIGTIFDSETPSSSGWAMSLITGNEGVSPALALIPPGYYVHVVDICLAHIGC 238
Query: 244 FEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLP 279
E+P A GRY ++ ++ +R+ YP++ P
Sbjct: 239 LELPIARGRYICTAGNFDWNTLLKTLRKKYPSYTFP 274
|
This subgroup contains aldehyde reductase and flavonoid reductase of the extended SDR-type and related proteins. Proteins in this subgroup have a complete SDR-type active site tetrad and a close match to the canonical extended SDR NADP-binding motif. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 295 |
| >gnl|CDD|215100 PLN00198, PLN00198, anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Score = 215 bits (550), Expect = 1e-68
Identities = 115/291 (39%), Positives = 172/291 (59%), Gaps = 14/291 (4%)
Query: 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASE 60
M+++ K CV G +G++AS L+KLLL +GY V +VRDP + KK HL AL +
Sbjct: 1 MATLTPTGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAHLRALQELGD 60
Query: 61 RLQLFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAK 120
L++F A+L +E SF++ + GCD V H A+P ++DP+ +++ PA++G NVL +CAK
Sbjct: 61 -LKIFGADLTDEESFEAPIAGCDLVFHVATPVNFASEDPENDMIKPAIQGVHNVLKACAK 119
Query: 121 FPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSE--LW-YPLSKTLAEDA 177
S+KRV+LTSS AAV + K +V++E ++D E + W YP SKTLAE A
Sbjct: 120 AKSVKRVILTSSAAAV-SINKLSGTGLVMNEKNWTDVEFLTSEKPPTWGYPASKTLAEKA 178
Query: 178 AWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG-------- 229
AWKFA+E +IDL+T+ P ++ GP L + +S + +SLI G + N G
Sbjct: 179 AWKFAEENNIDLITVIPTLMAGPSLTSDIPSSLSLAMSLITGNEFLINGLKGMQMLSGSI 238
Query: 230 -WVNVKDVANAHIQAFEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLP 279
+V+DV AHI E SA+GRY + E+ + + YP +Q+P
Sbjct: 239 SITHVEDVCRAHIFLAEKESASGRYICCAANTSVPELAKFLIKRYPQYQVP 289
|
Length = 338 |
| >gnl|CDD|178484 PLN02896, PLN02896, cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 213 bits (544), Expect = 1e-67
Identities = 127/297 (42%), Positives = 174/297 (58%), Gaps = 31/297 (10%)
Query: 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLF 65
+A CVTGA+GYI SWLVKLLL RGYTV A++RDP K+ HLL+ +RL+LF
Sbjct: 7 ESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPA---KSLHLLSKWKEGDRLRLF 63
Query: 66 KANLLEEGSFDSIVDGCDGVCHTASP--FYHDAKDPQVE------LLDPAVKGTLNVLNS 117
+A+L EEGSFD V GCDGV H A+ F + +E ++DPA+KGTLNVL S
Sbjct: 64 RADLQEEGSFDEAVKGCDGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKS 123
Query: 118 CAKFPSIKRVVLTSS---MAAVLNTGKPRTPDVVVDETWFS--DPEVCKQSELW-YPLSK 171
C K ++KRVV TSS + A + G+ R VVDET + D ++ W Y LSK
Sbjct: 124 CLKSKTVKRVVFTSSISTLTAKDSNGRWRA---VVDETCQTPIDHVWNTKASGWVYVLSK 180
Query: 172 TLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKG-AQTYP-----N 225
L E+AA+K+AKE IDLV++ V GP L P++ +S +LS I G ++ + N
Sbjct: 181 LLTEEAAFKYAKENGIDLVSVITTTVAGPFLTPSVPSSIQVLLSPITGDSKLFSILSAVN 240
Query: 226 VTFG---WVNVKDVANAHIQAFEVPSANGRY-CLVERVSHYSEIVNIIRELYPAFQL 278
G V+++D+ +AHI E A GRY C V+ SE++N + + YP +
Sbjct: 241 SRMGSIALVHIEDICDAHIFLMEQTKAEGRYICCVDSYD-MSELINHLSKEYPCSNI 296
|
Length = 353 |
| >gnl|CDD|178195 PLN02583, PLN02583, cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Score = 172 bits (439), Expect = 2e-52
Identities = 101/281 (35%), Positives = 155/281 (55%), Gaps = 23/281 (8%)
Query: 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFK 66
+ K VCV ASGY+ WLVK LLSRGYTV A+V+ + + + + L ERL++F
Sbjct: 4 ESSKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKNGETEIEKEIRGLSCEEERLKVFD 63
Query: 67 ANLLEEGSFDSIVD---GCDGV-CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFP 122
+ L+ + SI+D GC G+ C P + + D + ++D V+ NVL +CA+
Sbjct: 64 VDPLD---YHSILDALKGCSGLFCCFDPPSDYPSYDEK--MVDVEVRAAHNVLEACAQTD 118
Query: 123 SIKRVVLTSSMAAVL--NTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWK 180
+I++VV TSS+ AV+ + DV DE +SD C++ +LW+ L+KTL+E AW
Sbjct: 119 TIEKVVFTSSLTAVIWRDDNISTQKDV--DERSWSDQNFCRKFKLWHALAKTLSEKTAWA 176
Query: 181 FAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA-QTYPNVTFGWVNVKDVANA 239
A ++ +++V+IN +++GP L T L KGA Q Y N V+V + +A
Sbjct: 177 LAMDRGVNMVSINAGLLMGPSL-----TQHNPYL---KGAAQMYENGVLVTVDVNFLVDA 228
Query: 240 HIQAFEVPSANGRY-CLVERVSHYSEIVNIIRELYPAFQLP 279
HI+AFE S+ GRY C V+ + V + + L P P
Sbjct: 229 HIRAFEDVSSYGRYLCFNHIVNTEEDAVKLAQMLSPLIPSP 269
|
Length = 297 |
| >gnl|CDD|215370 PLN02686, PLN02686, cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Score = 148 bits (374), Expect = 4e-42
Identities = 93/291 (31%), Positives = 137/291 (47%), Gaps = 39/291 (13%)
Query: 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASER--- 61
A A ++VCVTG ++ +V LL GY+V+ +V D +K R + + G R
Sbjct: 49 ADAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKLREM-EMFGEMGRSND 107
Query: 62 -LQLFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPA------------- 107
+ ANL E S DGC GV HT++ +DPA
Sbjct: 108 GIWTVMANLTEPESLHEAFDGCAGVFHTSA------------FVDPAGLSGYTKSMAELE 155
Query: 108 VKGTLNVLNSCAKFPSIKRVVLTSSM-AAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166
K + NV+ +C + S+++ V TSS+ A V P V+DE +SD C+ ++LW
Sbjct: 156 AKASENVIEACVRTESVRKCVFTSSLLACVWRQNYPHDLPPVIDEESWSDESFCRDNKLW 215
Query: 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT-YPN 225
Y L K AE AAW+ A+ K + L TI PA+V GP +T+ A L KGAQ +
Sbjct: 216 YALGKLKAEKAAWRAARGKGLKLATICPALVTGPGFFRRNSTATIAYL---KGAQEMLAD 272
Query: 226 VTFGWVNVKDVANAHIQAFEV---PSANGRY-CLVERVSHYSEIVNIIREL 272
+V+ +A AH+ +E +A GRY C VS E + R++
Sbjct: 273 GLLATADVERLAEAHVCVYEAMGNKTAFGRYICFDHVVSREDEAEELARQI 323
|
Length = 367 |
| >gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 1e-38
Identities = 86/262 (32%), Positives = 131/262 (50%), Gaps = 25/262 (9%)
Query: 14 VTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEG 73
VTGA+G++ S LV+ LL++GY V+A VR +D L +++ + +L +
Sbjct: 3 VTGATGFLGSNLVRALLAQGYRVRALVRSGSDAVLLDGL--------PVEVVEGDLTDAA 54
Query: 74 SFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133
S + + GCD V H A+ AKD + EL V+GT NVL++ + ++RVV TSS+
Sbjct: 55 SLAAAMKGCDRVFHLAAFTSLWAKDRK-ELYRTNVEGTRNVLDAALE-AGVRRVVHTSSI 112
Query: 134 AAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTIN 193
AA+ PD +DET + Y SK LAE + A + +D+V +N
Sbjct: 113 AAL-----GGPPDGRIDETTPWNER---PFPNDYYRSKLLAELEVLEAA-AEGLDVVIVN 163
Query: 194 PAMVIGPLLQPTLNTSAAA-VLSLIKGA-QTYPNVTFGWVNVKDVANAHIQAFEVPSANG 251
P+ V GP + TS VL + G YP +V+V+DVA HI A E
Sbjct: 164 PSAVFGPGDEG--PTSTGLDVLDYLNGKLPAYPPGGTSFVDVRDVAEGHIAAMEKGRRGE 221
Query: 252 RYCLV-ERVSHYSEIVNIIREL 272
RY L E +S + ++ + E+
Sbjct: 222 RYILGGENLS-FKQLFETLAEI 242
|
This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318 |
| >gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 2e-33
Identities = 70/273 (25%), Positives = 111/273 (40%), Gaps = 32/273 (11%)
Query: 14 VTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEG 73
VTG +G+I S LV+ LL+ G+ V+ R + LD ++ +L +
Sbjct: 5 VTGGAGFIGSHLVERLLAAGHDVRGLDRLRD---------GLDPLLSGVEFVVLDLTDRD 55
Query: 74 SFDSIVDGC-DGVCHTA--SPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLT 130
D + G D V H A S E LD V GTLN+L + +KR V
Sbjct: 56 LVDELAKGVPDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAG-VKRFVFA 114
Query: 131 SSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLV 190
SS++ V P +DE + Y +SK AE +A+ + +V
Sbjct: 115 SSVSVVYGDPPPL----PIDEDLGPP-----RPLNPYGVSKLAAEQLLRAYARLYGLPVV 165
Query: 191 TINPAMVIGPLLQPTLNTSAAA--VLSLIKGAQTYP-----NVTFGWVNVKDVANAHIQA 243
+ P V GP +P L++ + + L+KG + T +V V DVA+A + A
Sbjct: 166 ILRPFNVYGPGDKPDLSSGVVSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADALLLA 225
Query: 244 FEVPSANGRYCLVERVSHYS--EIVNIIRELYP 274
E P G + + + + E+ + E
Sbjct: 226 LENP-DGGVFNIGSGTAEITVRELAEAVAEAVG 257
|
Length = 314 |
| >gnl|CDD|163279 TIGR03466, HpnA, hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 6e-27
Identities = 83/247 (33%), Positives = 120/247 (48%), Gaps = 19/247 (7%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69
V VTGA+G++ S +V+LLL +G V+ VR +D R+L LD ++ + +L
Sbjct: 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDR---RNLEGLDV-----EIVEGDL 52
Query: 70 LEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVL 129
+ S V GC + H A+ + A DP+ E+ V+GT N+L + A ++RVV
Sbjct: 53 RDPASLRKAVAGCRALFHVAADYRLWAPDPE-EMYAANVEGTRNLLRA-ALEAGVERVVY 110
Query: 130 TSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDL 189
TSS+A + R DET S + Y SK LAE AA + A EK + +
Sbjct: 111 TSSVATL----GVRGDGTPADETTPSSLD---DMIGHYKRSKFLAEQAALEMAAEKGLPV 163
Query: 190 VTINPAMVIGPL-LQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS 248
V +NP+ IGP ++PT T V L Y + V+V DVA H+ A E
Sbjct: 164 VIVNPSTPIGPRDIKPT-PTGRIIVDFLNGKMPAYVDTGLNLVHVDDVAEGHLLALERGR 222
Query: 249 ANGRYCL 255
RY L
Sbjct: 223 IGERYIL 229
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnA was assigned. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species. Length = 328 |
| >gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 2e-19
Identities = 57/251 (22%), Positives = 95/251 (37%), Gaps = 30/251 (11%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ VTG +G+I S LV+ LL GY V R + + R++ + +L +
Sbjct: 1 ILVTGGTGFIGSHLVRRLLQEGYEVIVLGRRRR---------SESLNTGRIRFHEGDLTD 51
Query: 72 EGSFDSIVDGC--DGVCHTAS-PFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVV 128
+ + ++ D V H A+ + + + + V GTL +L + + +KR V
Sbjct: 52 PDALERLLAEVQPDAVIHLAAQSGVGASFEDPADFIRANVLGTLRLLEAARRAG-VKRFV 110
Query: 129 LTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSID 188
SS + V D + E P S Y +K AE +A+ +
Sbjct: 111 FASS-SEV----YGDVADPPITEDTPLGP----LSP--YAAAKLAAERLVEAYARAYGLR 159
Query: 189 LVTINPAMVIGPLLQPTLNTSA-AAVLSLIKGAQTYPNVTFG-----WVNVKDVANAHIQ 242
V + V GP T A++ I + + G ++ V DVA A +
Sbjct: 160 AVILRLFNVYGPGNPDPFVTHVIPALIRRILEGKPILLLGDGTQRRDFLYVDDVARAILL 219
Query: 243 AFEVPSANGRY 253
A E P Y
Sbjct: 220 ALEHPDGGEIY 230
|
This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 233 |
| >gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 4e-18
Identities = 58/250 (23%), Positives = 88/250 (35%), Gaps = 64/250 (25%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ VTG +G+I S LV+ LL RG+ V R
Sbjct: 1 ILVTGGAGFIGSHLVRRLLERGHEVVVIDR------------------------------ 30
Query: 72 EGSFDSIVDGCDGVCHTAS----PFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRV 127
D +V H A+ P D +P E + V GTLN+L + K +KR
Sbjct: 31 ---LDVVV-------HLAALVGVPASWD--NP-DEDFETNVVGTLNLLEAARKA-GVKRF 76
Query: 128 VLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSI 187
V SS + G P + + + Y +SK AE + + +
Sbjct: 77 VYASSASV---YGSP-------EGLPEEEETPPRPLSP-YGVSKLAAEHLLRSYGESYGL 125
Query: 188 DLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP-----NVTFGWVNVKDVANAHIQ 242
+V + A V GP +P L+ + + N T +++V DV A +
Sbjct: 126 PVVILRLANVYGPGQRPRLDGVVNDFIRRALEGKPLTVFGGGNQTRDFIHVDDVVRAILH 185
Query: 243 AFEVPSANGR 252
A E P G
Sbjct: 186 ALENPLEGGG 195
|
Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 200 |
| >gnl|CDD|187543 cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 7e-17
Identities = 66/273 (24%), Positives = 101/273 (36%), Gaps = 46/273 (16%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
V VTGA+G+I LV LLSRG V+ +V R+ + + +L +
Sbjct: 2 VLVTGANGFIGRALVDKLLSRGEEVRIAV---------RNAENAEPSVVLAELPDID--- 49
Query: 72 EGSFDSIVDGCDGVCHTASPFYHD----AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRV 127
SF + G D V H A+ H DP + + T + + A +KR
Sbjct: 50 --SFTDLFLGVDAVVHLAA-RVHVMNDQGADPLSDYRKVNTELTRRLARA-AARQGVKRF 105
Query: 128 VLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSI 187
V SS+ G+ T DET P+ Y SK AE A + +
Sbjct: 106 VFLSSVKVN---GEG-TVGAPFDETDPPAPQDA------YGRSKLEAERALLELGASDGM 155
Query: 188 DLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGW-------VNVKDVANAH 240
++V + P MV GP L++ + G V++ ++ +A
Sbjct: 156 EVVILRPPMVYGP-------GVRGNFARLMRLIDRGLPLPPGAVKNRRSLVSLDNLVDAI 208
Query: 241 IQAFEVPSANGRYCLVERVSHYS--EIVNIIRE 271
+P A LV S E+V+ IR
Sbjct: 209 YLCISLPKAANGTFLVSDGPPVSTAELVDEIRR 241
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 303 |
| >gnl|CDD|216283 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase family | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 1e-15
Identities = 66/245 (26%), Positives = 93/245 (37%), Gaps = 33/245 (13%)
Query: 14 VTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
VTG G++ +V+LLL G V+ + + + + ++ +
Sbjct: 2 VTGGGGFLGRHIVRLLLREGELQEVRVFDLRFSPELLEDF-----SKLQVITYIEGDVTD 56
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131
+ + G D V HTA+ K + ++ VKGT NVL++C K ++ +V TS
Sbjct: 57 KQDLRRALQGSDVVIHTAAIIDVFGKAYRDTIMKVNVKGTQNVLDACVK-AGVRVLVYTS 115
Query: 132 SMAAVLNTGKPRTPDVVVDETW-----FSDPEVCKQSELWYPLSKTLAEDAAWK----FA 182
SM V + P V DET DP YP SK LAE K
Sbjct: 116 SMEVVGPNSYGQ-PIVNGDETTPYESTHQDP---------YPESKALAEKLVLKANGSTL 165
Query: 183 KEKSIDL-VTINPAMVIGP---LLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVAN 238
K + PA + G L P L L K NV V V +VA
Sbjct: 166 KNGGRLYTCALRPAGIFGEGDPFLFPFLVRLLK--NGLAKFRTGDKNVLSDRVYVGNVAW 223
Query: 239 AHIQA 243
AHI A
Sbjct: 224 AHILA 228
|
The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyzes the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. Length = 280 |
| >gnl|CDD|187567 cd05257, Arna_like_SDR_e, Arna decarboxylase_like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 4e-15
Identities = 68/251 (27%), Positives = 100/251 (39%), Gaps = 27/251 (10%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
V VTGA G+I S L + LL G+ V+A N L + +R ++ +
Sbjct: 2 VLVTGADGFIGSHLTERLLREGHEVRALD-IYNS--FNSWGLLDNAVHDRFHFISGDVRD 58
Query: 72 EGSFDSIVDGCDGVCHTAS----PFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRV 127
+ +V CD V H A+ P+ + P ++ V GTLNVL + KRV
Sbjct: 59 ASEVEYLVKKCDVVFHLAALIAIPYSY--TAPL-SYVETNVFGTLNVLEAACVL-YRKRV 114
Query: 128 VLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW-YPLSKTLAEDAAWKFAKEKS 186
V TS+ + V T + DV +DE P + Y SK A+ A+ + +
Sbjct: 115 VHTST-SEVYGTAQ----DVPIDE---DHPLLYINKPRSPYSASKQGADRLAYSYGRSFG 166
Query: 187 IDLVTINPAMVIGPLLQ-----PTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHI 241
+ + I P GP PT+ + A LI P T + VKD A I
Sbjct: 167 LPVTIIRPFNTYGPRQSARAVIPTIISQRAIGQRLINLGDGSP--TRDFNFVKDTARGFI 224
Query: 242 QAFEVPSANGR 252
+ A G
Sbjct: 225 DILDAIEAVGE 235
|
Decarboxylase domain of ArnA. ArnA, is an enzyme involved in the modification of outer membrane protein lipid A of gram-negative bacteria. It is a bifunctional enzyme that catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid and N-10-formyltetrahydrofolate-dependent formylation of UDP-4-amino-4-deoxy-l-arabinose; its NAD-dependent decaboxylating activity is in the C-terminal 360 residues. This subgroup belongs to the extended SDR family, however the NAD binding motif is not a perfect match and the upstream Asn of the canonical active site tetrad is not conserved. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 3e-14
Identities = 58/277 (20%), Positives = 101/277 (36%), Gaps = 40/277 (14%)
Query: 14 VTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL---- 69
VTG +G++ LVK LL G+ V VR + + + ++R+++ + +L
Sbjct: 3 VTGGTGFLGRHLVKRLLENGFKVLVLVRSESLGEAHERIEEAGLEADRVRVLEGDLTQPN 62
Query: 70 --LEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPA---VKGTLNVLNSCAKFPSI 124
L + + D V H A+ + D Q D + GT +VL A+
Sbjct: 63 LGLSAAASRELAGKVDHVIHCAASY-----DFQAPNEDAWRTNIDGTEHVLELAARLDIQ 117
Query: 125 KRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE 184
+ ++++ A G + ET + + K Y SK AE A
Sbjct: 118 RFHYVSTAYVAGNREG-------NIRETELNPGQNFKN---PYEQSKAEAEQLVRAAA-- 165
Query: 185 KSIDLVTINPAMVIGPLLQPTLNT-SAAAVLSLIKGAQTYPNVT------FGWVN---VK 234
I L P++V+G T + L+ +N V
Sbjct: 166 TQIPLTVYRPSIVVGD--SKTGRIEKIDGLYELLNLLAKLGRWLPMPGNKGARLNLVPVD 223
Query: 235 DVANAHIQAFEVPSANGR-YCLVERVS-HYSEIVNII 269
VA+A + + P ANG+ + L + EI ++
Sbjct: 224 YVADAIVYLSKKPEANGQIFHLTDPTPQTLREIADLF 260
|
This subgroup of extended SDR family domains have the characteristic active site tetrad and a well-conserved NAD(P)-binding motif. This subgroup is not well characterized, its members are annotated as having a variety of putative functions. One characterized member is Pseudomonas fluorescens MupV a protein involved in the biosynthesis of Mupirocin, a polyketide-derived antibiotic. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|187554 cd05243, SDR_a5, atypical (a) SDRs, subgroup 5 | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 6e-14
Identities = 56/244 (22%), Positives = 94/244 (38%), Gaps = 53/244 (21%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
V V GA+G + +V+ LL RGY V+A VRDP+ +K ++ +L +
Sbjct: 2 VLVVGATGKVGRHVVRELLDRGYQVRALVRDPSQAEKLEA--------AGAEVVVGDLTD 53
Query: 72 EGSFDSIVDGCDGV--CHTASPFYHDAKDP-QVELLDPAVKGTLNVLNSCAKFPSIKRVV 128
S + ++G D V + V+ G +N++++ K +KR V
Sbjct: 54 AESLAAALEGIDAVISAAGSGG--KGGPRTEAVDYD-----GNINLIDAAKKA-GVKRFV 105
Query: 129 LTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSID 188
L SS+ KP P ++ Y +K AED + + +D
Sbjct: 106 LVSSI----GADKPSHP---------------LEALGPYLDAKRKAED----YLRASGLD 142
Query: 189 LVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS 248
+ P G L T + G T + G ++ DVA +A + P+
Sbjct: 143 YTIVRP----GGLTDDPAGTGRVVLG----GDGTRLD---GPISRADVAEVLAEALDTPA 191
Query: 249 ANGR 252
A G+
Sbjct: 192 AIGK 195
|
This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 203 |
| >gnl|CDD|187552 cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 4e-13
Identities = 62/244 (25%), Positives = 91/244 (37%), Gaps = 39/244 (15%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVR--DPNDPKKTRHLLALDGASERLQLFKANL 69
V VTG SG+ LVK LL RG VR D P + ++ K ++
Sbjct: 2 VLVTGGSGFFGERLVKQLLERG---GTYVRSFDIAPPGEA----LSAWQHPNIEFLKGDI 54
Query: 70 LEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPA-------VKGTLNVLNSCAKFP 122
+ + + G D V HTA+ V L P V GT NVL++C +
Sbjct: 55 TDRNDVEQALSGADCVFHTAAI---------VPLAGPRDLYWEVNVGGTQNVLDACQRC- 104
Query: 123 SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFA 182
+++ V TSS + + DET P Y +K +AE +
Sbjct: 105 GVQKFVYTSSSSVIFGGQNIHNG----DETLPYPPL----DSDMYAETKAIAEIIVLEAN 156
Query: 183 KEKSIDLVTINPAMVIGP---LLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANA 239
+ + PA + GP L P L A L + N + V ++A+A
Sbjct: 157 GRDDLLTCALRPAGIFGPGDQGLVPILFEWAEKGLVKFVFGR--GNNLVDFTYVHNLAHA 214
Query: 240 HIQA 243
HI A
Sbjct: 215 HILA 218
|
Extended SDR family domains belonging to this subgroup have the characteristic active site tetrad and a fairly well-conserved NAD(P)-binding motif. 3b-HSD catalyzes the NAD-dependent conversion of various steroids, such as pregnenolone to progesterone, or androstenediol to testosterone. This subgroup includes an unusual bifunctional 3b-HSD/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. It also includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7]. C(27) 3beta-HSD/HSD3B7 is a membrane-bound enzyme of the endoplasmic reticulum, that catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human NSDHL (NAD(P)H steroid dehydrogenase-like protein) cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 331 |
| >gnl|CDD|187673 cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD(P)H steroid dehydrogenase-like protein)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 3e-11
Identities = 71/247 (28%), Positives = 107/247 (43%), Gaps = 44/247 (17%)
Query: 12 VCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLL 70
V G SG++ LV+ LL RG TV D + T L +S R+Q +L
Sbjct: 2 CLVVGGSGFLGRHLVEQLLRRGNPTVHVF-----DIRPTFEL--DPSSSGRVQFHTGDLT 54
Query: 71 EEGSFDSIVD--GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVV 128
+ + + G + V HTASP + D ++ V+GT NV+ +C K +K++V
Sbjct: 55 DPQDLEKAFNEKGPNVVFHTASPDHGSNDDLYYKV---NVQGTRNVIEACRK-CGVKKLV 110
Query: 129 LTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSID 188
TSS + V N + DE+ P+ + + Y +K LAE K A +
Sbjct: 111 YTSSASVVFN----GQDIINGDESL-PYPDKHQDA---YNETKALAEKLVLK-ANDPESG 161
Query: 189 LVT--INPAMVIGP---LLQPTLNTSAAAVLSLIKGAQTYPNVTFG-------WVNVKDV 236
L+T + PA + GP L P L L K +T G + V++V
Sbjct: 162 LLTCALRPAGIFGPGDRQLVPGL-------LKAAKNGKT--KFQIGDGNNLFDFTYVENV 212
Query: 237 ANAHIQA 243
A+AHI A
Sbjct: 213 AHAHILA 219
|
This subgroup includes human NSDHL and related proteins. These proteins have the characteristic active site tetrad of extended SDRs, and also have a close match to their NAD(P)-binding motif. Human NSDHL is a 3beta-hydroxysteroid dehydrogenase (3 beta-HSD) which functions in the cholesterol biosynthetic pathway. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Mutations in the gene encoding NSDHL cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. This subgroup also includes an unusual bifunctional [3beta-hydroxysteroid dehydrogenase (3b-HSD)/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 335 |
| >gnl|CDD|200431 TIGR04180, EDH_00030, NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 1e-10
Identities = 74/276 (26%), Positives = 111/276 (40%), Gaps = 58/276 (21%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVR----------DPNDPKKTRHLLALDGASER 61
V VTGA G+I S LV+ L+ +GY V+A V D + P+ ++
Sbjct: 1 VLVTGADGFIGSHLVEALVRQGYEVRAFVLYNSFNSWGWLDTSPPE----------VKDK 50
Query: 62 LQLFKANLLEEGSFDSIVDGCDGVCHTAS----PFYHDAKDPQVELLDPAVKGTLNVLNS 117
+++ ++ + S + GCD V H A+ P+ + A D V D V GTLNVL +
Sbjct: 51 IEVVTGDIRDPDSVRKAMKGCDVVFHLAALIAIPYSYIAPDSYV---DTNVTGTLNVLQA 107
Query: 118 CAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDA 177
+++VV TS+ + V T + V +DE QS Y SK A+
Sbjct: 108 ARDL-GVEKVVHTST-SEVYGTAQ----YVPIDEKHPLQG----QSP--YSASKIGADQL 155
Query: 178 AWKFAKEKSIDLVTINPAMVIGP-----LLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVN 232
A F + + + I P GP + PT+ T A+ IK P F +
Sbjct: 156 ALSFYRSFNTPVTIIRPFNTYGPRQSARAVIPTIITQIASGKRRIKLGSLSPTRDFNY-- 213
Query: 233 VKDVANAHIQAFEVPSANGRYCLVERVSHYSEIVNI 268
V D I E G E++NI
Sbjct: 214 VTDTVRGFIAIAESDKTVG------------EVINI 237
|
This clade within the NAD dependent epimerase/dehydratase superfamily (pfam01370) is characterized by inclusion of its members within a cassette of seven distinctive enzymes. These include four genes homologous to the elements of the neuraminic (sialic) acid biosynthesis cluster (NeuABCD), an aminotransferase and a nucleotidyltransferase in addition to the epimerase/dehydratase. Together it is very likely that these enzymes direct the biosynthesis of a nine-carbon sugar analagous to CMP-neuraminic acid. These seven genes form the core of the cassette, although they are often accompanied by additional genes that may further modify the product sugar. Although this cassette is widely distributed in bacteria, the family nomenclature arises from the instance in Leptospira interrogans serovar Lai, str. 56601, where it appears as the 30th gene in the 91-gene lipopolysaccharide biosynthesis cluster. Length = 297 |
| >gnl|CDD|187566 cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 2e-10
Identities = 74/286 (25%), Positives = 117/286 (40%), Gaps = 58/286 (20%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVK-----ASVRDPNDPKKTRHLLALDGASERLQLFK 66
V VTG +G+I S LV+ LL RG+ V ++ + N P+ ++ +
Sbjct: 2 VLVTGGAGFIGSHLVERLLERGHEVIVLDNLSTGKKENLPEVK----------PNVKFIE 51
Query: 67 ANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPA------VKGTLNVLNSCAK 120
++ ++ + +G D V H A+ +E DP V GTLN+L + K
Sbjct: 52 GDIRDDELVEFAFEGVDYVFHQAA--QASVP-RSIE--DPIKDHEVNVLGTLNLLEAARK 106
Query: 121 FPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWK 180
+KR V SS + G P P + DE +P S Y +SK E
Sbjct: 107 A-GVKRFVYASSSSVY---GDP--PYLPKDEDHPPNPL----SP--YAVSKYAGELYCQV 154
Query: 181 FAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLS-----LIKGAQTYPNVTFG------ 229
FA+ + V++ V GP P N AAV+ +KG P +G
Sbjct: 155 FARLYGLPTVSLRYFNVYGPRQDP--NGGYAAVIPIFIERALKGE---PPTIYGDGEQTR 209
Query: 230 -WVNVKDVANAHIQAFEVPSANGRY--CLVERVSHYSEIVNIIREL 272
+ V+DV A++ A + Y +R S +E+ +IRE+
Sbjct: 210 DFTYVEDVVEANLLAATAGAGGEVYNIGTGKRTS-VNELAELIREI 254
|
This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 304 |
| >gnl|CDD|187579 cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 6e-09
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69
VV V GA+G+I ++V L RG V R + R L+ D + + +L
Sbjct: 1 MVVTVFGATGFIGRYVVNRLAKRGSQVIVPYRC--EAYARRLLVMGDLGQ--VLFVEFDL 56
Query: 70 LEEGSFDSIVDGCDGV 85
++ S ++G D V
Sbjct: 57 RDDESIRKALEGSDVV 72
|
This subgroup of extended SDR-like proteins are atypical SDRs. They have a glycine-rich NAD(P)-binding motif similar to the typical SDRs, GXXGXXG, and have the YXXXK active site motif (though not the other residues of the SDR tetrad). Members identified include NDUFA9 (mitochondrial) and putative nucleoside-diphosphate-sugar epimerase. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 273 |
| >gnl|CDD|187671 cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD (hydroxysteroid dehydrogenase) and HSD3B1(delta 5-delta 4-isomerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 8e-08
Identities = 59/246 (23%), Positives = 92/246 (37%), Gaps = 23/246 (9%)
Query: 11 VVCVTGASGYIASWLVKLLLSRGYTVKA-SVRDPNDPKKTRHLLALDGASERLQLFKANL 69
V VTG G++ +++LLL R +K V D + + + ++
Sbjct: 1 VCLVTGGGGFLGQHIIRLLLERKEELKEIRVLDKAFGPELIEHFEKSQGKTYVTDIEGDI 60
Query: 70 LEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVL 129
+ G V HTA+ EL + V GT VL +C + ++KR+V
Sbjct: 61 KDLSFLFRACQGVSVVIHTAAIVDVFGPPNYEELEEVNVNGTQAVLEACVQ-NNVKRLVY 119
Query: 130 TSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDA-----AWKFAKE 184
TSS+ K R V++T + D S Y SK LAE+ +
Sbjct: 120 TSSIEVAGPNFKGRPIFNGVEDTPYED-----TSTPPYASSKLLAENIVLNANGAPLKQG 174
Query: 185 KSIDLVTINPAMVIG---PLLQPTLN---TSAAAVLSLIKGAQTYPNVTFGWVNVKDVAN 238
+ + P + G L + T+ + IKG+ P V G +VA
Sbjct: 175 GYLVTCALRPMYIYGEGSHFLTEIFDFLLTNNGWLFPRIKGSGVNPLVYVG-----NVAW 229
Query: 239 AHIQAF 244
AHI A
Sbjct: 230 AHILAA 235
|
This extended-SDR subgroup includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7], and related proteins. These proteins have the characteristic active site tetrad and NAD(P)-binding motif of extended SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. C(27) 3beta-HSD is a membrane-bound enzyme of the endoplasmic reticulum, it catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 354 |
| >gnl|CDD|187575 cd05265, SDR_a1, atypical (a) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 1e-07
Identities = 61/253 (24%), Positives = 90/253 (35%), Gaps = 54/253 (21%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASV-----RDPNDPKKTRHLLALDGASERLQLFK 66
+ + G + +I LV+ LL+ G+ V +V P+ P+ H++ D
Sbjct: 3 ILIIGGTRFIGKALVEELLAAGHDV--TVFNRGRTKPDLPEGVEHIVG-DRNDRD---AL 56
Query: 67 ANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKR 126
LL FD +VD +T QVE A KG + K+
Sbjct: 57 EELLGGEDFDVVVDTI---AYTPR---------QVERALDAFKGRV------------KQ 92
Query: 127 VVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW-YPLSKTLAEDAAWKFAKEK 185
+ SS + L G+ T + T +P+ S+ W Y K AED E
Sbjct: 93 YIFISSASVYLKPGRVIT-----ESTPLREPDAVGLSDPWDYGRGKRAAED----VLIEA 143
Query: 186 SIDLVTI-NPAMVIGPLL-QPTLNTSAAAVLS----LIKGAQTYPNVTFGWVNVKDVANA 239
+ TI P + GP L + L+ G V F VKD+A A
Sbjct: 144 AAFPYTIVRPPYIYGPGDYTGRLAYFFDRLARGRPILVPGDGHSL-VQFIH--VKDLARA 200
Query: 240 HIQAFEVPSANGR 252
+ A P A G
Sbjct: 201 LLGAAGNPKAIGG 213
|
Atypical SDRs in this subgroup are poorly defined and have been identified putatively as isoflavones reductase, sugar dehydratase, mRNA binding protein etc. Atypical SDRs are distinct from classical SDRs. Members of this subgroup retain the canonical active site triad (though not the upstream Asn found in most SDRs) but have an unusual putative glycine-rich NAD(P)-binding motif, GGXXXXG, in the usual location. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 250 |
| >gnl|CDD|222146 pfam13460, NAD_binding_10, NADH(P)-binding | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-07
Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 24/119 (20%)
Query: 14 VTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEG 73
V GA+G LVK LL+RG+ V A R+P+ + + + +L +
Sbjct: 3 VIGATGKTGRRLVKELLARGHQVTALSRNPS-----------KAPAPGVTPVQKDLFDLA 51
Query: 74 SFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132
+ G D V G ++L++ A+ ++R+V+ S+
Sbjct: 52 DLAEALAGVDAVVDAFGAR------------PDDSDGVKHLLDAAARA-GVRRIVVVSA 97
|
Length = 182 |
| >gnl|CDD|187556 cd05245, SDR_a2, atypical (a) SDRs, subgroup 2 | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 1e-07
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
V VTGA+GY+ LV LL G+ V+A VR P K SER+ + + +L +
Sbjct: 1 VLVTGATGYVGGRLVPRLLQEGHQVRALVRSPE--KLADRPW-----SERVTVVRGDLED 53
Query: 72 EGSFDSIVDGCDGV 85
S + ++G D
Sbjct: 54 PESLRAALEGIDTA 67
|
This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|187561 cd05251, NmrA_like_SDR_a, NmrA (a transcriptional regulator) and HSCARG (an NADPH sensor) like proteins, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-07
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 14 VTGASGYIASWLVKLLLSR-GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEE 72
V GA+G +V+ LL G+ V+A RDP+ P LA G ++ + +L +
Sbjct: 3 VFGATGKQGGSVVRALLKDPGFKVRALTRDPSSPAA--KALAAPGV----EVVQGDLDDP 56
Query: 73 GSFDSIVDGCDGVCHTASPFYHDAKDPQVEL 103
S ++ + G GV F+ + ++
Sbjct: 57 ESLEAALKGVYGVFLVT-DFWEAGGEDEIAQ 86
|
NmrA and HSCARG like proteins. NmrA is a negative transcriptional regulator of various fungi, involved in the post-translational modulation of the GATA-type transcription factor AreA. NmrA lacks the canonical GXXGXXG NAD-binding motif and has altered residues at the catalytic triad, including a Met instead of the critical Tyr residue. NmrA may bind nucleotides but appears to lack any dehydrogenase activity. HSCARG has been identified as a putative NADP-sensing molecule, and redistributes and restructures in response to NADPH/NADP ratios. Like NmrA, it lacks most of the active site residues of the SDR family, but has an NAD(P)-binding motif similar to the extended SDR family, GXXGXXG. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Atypical SDRs are distinct from classical SDRs. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 242 |
| >gnl|CDD|187545 cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, subgroup 2, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 3e-07
Identities = 40/139 (28%), Positives = 59/139 (42%), Gaps = 12/139 (8%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ VTG +G+I S LV LL G V V D N R + + ++ + K +LL+
Sbjct: 2 ILVTGGAGFIGSHLVDRLLEEGNEV--VVVD-NLSSGRRENIEPEFENKAFRFVKRDLLD 58
Query: 72 EGSFDSIVDGCDGVCHTASPFYHD----AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRV 127
+ D V H A+ D A DP ++ L+ V T NVL + +KR+
Sbjct: 59 T-ADKVAKKDGDTVFHLAA--NPDVRLGATDPDID-LEENVLATYNVLEAMRA-NGVKRI 113
Query: 128 VLTSSMAAVLNTGKPRTPD 146
V SS TP+
Sbjct: 114 VFASSSTVYGEAKVIPTPE 132
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of archaeal and bacterial proteins, and has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|223774 COG0702, COG0702, Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 1e-06
Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 16/122 (13%)
Query: 14 VTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEG 73
VTGA+G++ +V+ LL+RG+ V+A+VR+P G L +L +
Sbjct: 5 VTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA-----GGVEVVL----GDLRDPK 55
Query: 74 SFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133
S + G DGV + V+ T V + A +K V S +
Sbjct: 56 SLVAGAKGVDGVLLISGLLDGSDAFRAVQ-------VTAVVRAAEAAGAGVKHGVSLSVL 108
Query: 134 AA 135
A
Sbjct: 109 GA 110
|
Length = 275 |
| >gnl|CDD|187555 cd05244, BVR-B_like_SDR_a, biliverdin IX beta reductase (BVR-B, aka flavin reductase)-like proteins; atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-06
Identities = 36/187 (19%), Positives = 66/187 (35%), Gaps = 29/187 (15%)
Query: 14 VTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEG 73
+ GA+G S +V+ L+RG+ V A VRDP K E+L++ + ++L+
Sbjct: 4 IIGATGRTGSAIVREALARGHEVTALVRDPA--KLPAEH-------EKLKVVQGDVLDLE 54
Query: 74 SFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133
++G D V L +GT N++ S K +KR+++
Sbjct: 55 DVKEALEGQDAVISALGT---RNDLSPTTLH---SEGTRNIV-SAMKAAGVKRLIVVGGA 107
Query: 134 AAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTIN 193
+ R +V +T + K +E +D +
Sbjct: 108 G----SLDDRPKVTLVLDTLLF-------PPALRRV--AEDHARMLKVLRESGLDWTAVR 154
Query: 194 PAMVIGP 200
P +
Sbjct: 155 PPALFDG 161
|
Human BVR-B catalyzes pyridine nucleotide-dependent production of bilirubin-IX beta during fetal development; in the adult BVR-B has flavin and ferric reductase activities. Human BVR-B catalyzes the reduction of FMN, FAD, and riboflavin. Recognition of flavin occurs mostly by hydrophobic interactions, accounting for the broad substrate specificity. Atypical SDRs are distinct from classical SDRs. BVR-B does not share the key catalytic triad, or conserved tyrosine typical of SDRs. The glycine-rich NADP-binding motif of BVR-B is GXXGXXG, which is similar but not identical to the pattern seen in extended SDRs. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 207 |
| >gnl|CDD|187581 cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 3e-06
Identities = 41/197 (20%), Positives = 74/197 (37%), Gaps = 21/197 (10%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69
+ VTGA G+I S L + L + G+ V+ + D K H+ E + +L
Sbjct: 1 QRALVTGAGGFIGSHLAERLKAEGHYVRGA-----DWKSPEHMTQPTDDDEFHLV---DL 52
Query: 70 LEEGSFDSIVDGCDGVCHTASPF--YHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRV 127
E + +G D V H A+ + ++ N+L + A+ ++R
Sbjct: 53 REMENCLKATEGVDHVFHLAADMGGMGYIQSNHAVIMYNNTLINFNMLEA-ARINGVERF 111
Query: 128 VLTSSMAAVLNTGKPRTPDVVV---DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE 184
+ SS A V K VV ++ W ++P+ Y K E + ++
Sbjct: 112 LFASS-ACVYPEFKQLETTVVRLREEDAWPAEPQDA------YGWEKLATERLCQHYNED 164
Query: 185 KSIDLVTINPAMVIGPL 201
I+ + + GP
Sbjct: 165 YGIETRIVRFHNIYGPR 181
|
This subgroup of NDP-sugar epimerase/dehydratases are extended SDRs; they have the characteristic active site tetrad, and an NAD-binding motif: TGXXGXX[AG], which is a close match to the canonical NAD-binding motif. Members include Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME) which catalyzes the epimerization of two positions of GDP-alpha-D-mannose to form GDP-beta-L-galactose. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 328 |
| >gnl|CDD|187541 cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 4e-06
Identities = 41/159 (25%), Positives = 62/159 (38%), Gaps = 35/159 (22%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRD--PNDPKKTRHLLALDGASERLQLFKA 67
K + +TG +G++ S L LL G+ V V + + HL+ + +
Sbjct: 1 KRILITGGAGFLGSHLCDRLLEDGHEVIC-VDNFFTGRKRNIEHLI----GHPNFEFIRH 55
Query: 68 NLLE--EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIK 125
++ E D I C ASP H +P ++ L V GTLN+L +
Sbjct: 56 DVTEPLYLEVDQIY---HLAC-PASPV-HYQYNP-IKTLKTNVLGTLNMLGLAKR--VGA 107
Query: 126 RVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSE 164
RV+L S T +V + DPEV Q E
Sbjct: 108 RVLLAS------------TSEV------YGDPEVHPQPE 128
|
UGD catalyzes the formation of UDP-xylose from UDP-glucuronate; it is an extended-SDR, and has the characteristic glycine-rich NAD-binding pattern, TGXXGXXG, and active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|219687 pfam07993, NAD_binding_4, Male sterility protein | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 6e-06
Identities = 58/257 (22%), Positives = 88/257 (34%), Gaps = 44/257 (17%)
Query: 14 VTGASGYIASWLVKLLLSRGYTVK--ASVR--DPNDPKK--TRHLLALD-----GASERL 62
+TGA+G++ L++ LL VK VR D + + LL A ER+
Sbjct: 1 LTGATGFLGKVLLEKLLRSTPEVKIYCLVRAKDGESALERLRQELLKYGLFDRLKALERI 60
Query: 63 Q-----LFKANL-LEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLN 116
L + NL L + F + + D + H A+ +L V GT VL
Sbjct: 61 IPVAGDLSEPNLGLSDEDFQELAEEVDVIIHNAATVNFVEPYS--DLRATNVLGTREVLR 118
Query: 117 SCAKFPSIKRVVLTSSMAAVLNT---GKPRTPDVVVDETWFSDPEVCKQSELW---YPLS 170
+ S+ A +N G +DE Y S
Sbjct: 119 LAKQMKK-LPFHHVST--AYVNGERGGLLEEKPYKLDEDEP------ALLGGLPNGYTQS 169
Query: 171 KTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT--YPNVT- 227
K LAE + A + +V P+++ G +N L+ GA P++
Sbjct: 170 KWLAEQLVREAAGG--LPVVIYRPSIITGESRTGWINGDDFGPRGLLGGAGLGVLPDILG 227
Query: 228 -----FGWVNVKDVANA 239
V V VANA
Sbjct: 228 DPDARLDLVPVDYVANA 244
|
This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included. Length = 245 |
| >gnl|CDD|187562 cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 6e-06
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 8/128 (6%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKAN 68
GK V VTG +G+ SWL L G V DP P + ++ + +
Sbjct: 4 GKRVLVTGHTGFKGSWLSLWLQELGAKVIGYSLDP--PTNPNLFELANLD-NKISSTRGD 60
Query: 69 LLEEGSFDSIVDGC--DGVCH-TASPFYHDA-KDPQVELLDPAVKGTLNVLNSCAKFPSI 124
+ + + + + V H A P + KDP VE + V GT+N+L + + S+
Sbjct: 61 IRDLNALREAIREYEPEIVFHLAAQPLVRLSYKDP-VETFETNVMGTVNLLEAIRETGSV 119
Query: 125 KRVVLTSS 132
K VV +S
Sbjct: 120 KAVVNVTS 127
|
This subgroup contains CDP-D-glucose 4,6-dehydratase, an extended SDR, which catalyzes the conversion of CDP-D-glucose to CDP-4-keto-6-deoxy-D-glucose. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 336 |
| >gnl|CDD|191263 pfam05368, NmrA, NmrA-like family | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 9e-06
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ V GA+GY +V+ L G+ V+A VRDP LA + ++L + +L +
Sbjct: 1 ILVFGATGYQGGSVVRASLKAGHPVRALVRDPKSE------LAKSLKAAGVELVEGDLDD 54
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVK 109
S + G D V + + +L D A +
Sbjct: 55 HESLVEALKGVDVVFSVTGFWLSKEIEDGKKLADAAKE 92
|
NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families. Length = 232 |
| >gnl|CDD|187574 cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase (G4E), subgroup 5, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-05
Identities = 45/197 (22%), Positives = 73/197 (37%), Gaps = 25/197 (12%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKA-SVRDPNDPKKTRHLLALDGASERLQLFKANLL 70
V + G +G+I S LV LL G V+ P L L G + K +
Sbjct: 2 VLIVGGNGFIGSHLVDALLEEGPQVRVFDRSIPPYE------LPLGG----VDYIKGDYE 51
Query: 71 EEGSFDSIVDGCDGVCHTAS-PFYHDAK-DPQVELLDPAVKGTLNVLNSCAKFPSIKRVV 128
+S + G D V H AS + +P +++ V T+ +L +CA I +++
Sbjct: 52 NRADLESALVGIDTVIHLASTTNPATSNKNPILDIQT-NVAPTVQLLEACAA-AGIGKII 109
Query: 129 LTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSID 188
SS V G P + E+ + P Y +SK E + +D
Sbjct: 110 FASSGGTVY--GVPEQLP--ISESDPTLPISS------YGISKLAIEKYLRLYQYLYGLD 159
Query: 189 LVTINPAMVIGPLLQPT 205
+ + GP +P
Sbjct: 160 YTVLRISNPYGPGQRPD 176
|
This subgroup partially conserves the characteristic active site tetrad and NAD-binding motif of the extended SDRs, and has been identified as possible UDP-glucose 4-epimerase (aka UDP-galactose 4-epimerase), a homodimeric member of the extended SDR family. UDP-glucose 4-epimerase catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300 |
| >gnl|CDD|187568 cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 3e-05
Identities = 27/129 (20%), Positives = 53/129 (41%), Gaps = 10/129 (7%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKK----TRHLLALDGASERLQLF 65
V +TG +G+I S L + L +G+ V D N ++ L + ++
Sbjct: 1 MRVLITGGAGFIGSNLARFFLKQGWEV--IGFD-NLMRRGSFGNLAWLKANREDGGVRFV 57
Query: 66 KANLLEEGSFDSIVDGCDGVCHTASPFYHDA--KDPQVELLDPAVKGTLNVLNSCAKFPS 123
++ + + + D + HTA+ P+++ A+ GTLNVL + +
Sbjct: 58 HGDIRNRNDLEDLFEDIDLIIHTAAQPSVTTSASSPRLDFETNAL-GTLNVLEAARQHAP 116
Query: 124 IKRVVLTSS 132
+ TS+
Sbjct: 117 NAPFIFTST 125
|
CDP-tyvelose 2-epimerase is a tetrameric SDR that catalyzes the conversion of CDP-D-paratose to CDP-D-tyvelose, the last step in tyvelose biosynthesis. This subgroup is a member of the extended SDR subfamily, with a characteristic active site tetrad and NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 337 |
| >gnl|CDD|235546 PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 3e-05
Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 21/146 (14%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
GK VTGAS I + L + G V + + L G R +
Sbjct: 4 QGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEAR--VLVF 61
Query: 68 NLLEEGSFDSIVD-------GCDGVCHTA-----SPFYHDAKDPQ-VELLDPAVKGTLNV 114
++ +E + ++++ D + + A + + ++D + GT NV
Sbjct: 62 DVSDEAAVRALIEAAVEAFGALDILVNNAGITRDALL-PRMSEEDWDRVIDVNLTGTFNV 120
Query: 115 LNSCAKFPSIK----RVVLTSSMAAV 136
+ + P IK R+V SS++ V
Sbjct: 121 VRAALP-PMIKARYGRIVNISSVSGV 145
|
Length = 246 |
| >gnl|CDD|187578 cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 4e-05
Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 22/123 (17%)
Query: 14 VTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEG 73
VTGA+G + + +V+LLL++ +V A VR+P K A DG ++ + + +
Sbjct: 3 VTGATGKLGTAVVELLLAKVASVVALVRNPEKAKA----FAADGV----EVRQGDYDDPE 54
Query: 74 SFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAV-KGTLNVLNSCAKFPSIKRVVLTSS 132
+ + +G D + + D +D A G +K +V S+
Sbjct: 55 TLERAFEGVDRLLLISPSDLEDRIQQHKNFIDAAKQAG-------------VKHIVYLSA 101
Query: 133 MAA 135
A
Sbjct: 102 SGA 104
|
TMR is an atypical NADP-binding protein of the SDR family. It lacks the active site residues of the SDRs but has a glycine rich NAD(P)-binding motif that matches the extended SDRs. Proteins in this subgroup however, are more similar in length to the classical SDRs. TMR was identified as a reducer of triphenylmethane dyes, important environmental pollutants. This subgroup also includes Escherichia coli NADPH-dependent quinine oxidoreductase (QOR2), which catalyzes two-electron reduction of quinone; but is unlikely to play a major role in protecting against quinone cytotoxicity. Atypical SDRs are distinct from classical SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 272 |
| >gnl|CDD|225857 COG3320, COG3320, Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 4e-05
Identities = 48/206 (23%), Positives = 80/206 (38%), Gaps = 25/206 (12%)
Query: 12 VCVTGASGYIASWLV-KLLLSRGYTVKASVRDPNDPKKTRHLL-ALDG-------ASERL 62
V +TGA+G++ ++L+ +LL V VR +D L D +++R+
Sbjct: 3 VLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRV 62
Query: 63 QLFKANL------LEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLN 116
++ +L L E ++ + + D + H A+ + P EL V GT VL
Sbjct: 63 EVVAGDLAEPDLGLSERTWQELAENVDLIIHNAA--LVNHVFPYSELRGANVLGTAEVLR 120
Query: 117 SCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW--YPLSKTLA 174
A K + SS +V T V DE P L Y SK +A
Sbjct: 121 LAAT-GKPKPLHYVSS-ISVGETEYYSNFTVDFDE---ISPTRNVGQGLAGGYGRSKWVA 175
Query: 175 EDAAWKFAKEKSIDLVTINPAMVIGP 200
E + A ++ + + P + G
Sbjct: 176 EKLV-REAGDRGLPVTIFRPGYITGD 200
|
Length = 382 |
| >gnl|CDD|187549 cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 4e-05
Identities = 46/192 (23%), Positives = 70/192 (36%), Gaps = 25/192 (13%)
Query: 11 VVCVTGASGYIASWLVKLLLSRG--YTVK-ASVRDPNDPKKTRHLLALDGASERLQLFKA 67
V +TGASG++ L + LLS + V P P + +
Sbjct: 2 KVLITGASGFVGQRLAERLLSDVPNERLILIDVVSPKAPSGAPRVTQI----------AG 51
Query: 68 NLLEEGSFDSIVDG-CDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKR 126
+L +++ +G D V H A+ A+ V GT N+L + K R
Sbjct: 52 DLAVPALIEALANGRPDVVFHLAAIVSGGAEADFDLGYRVNVDGTRNLLEALRKNGPKPR 111
Query: 127 VVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKS 186
V TSS+A G P P+ V D T DP Y K + E +++
Sbjct: 112 FVFTSSLAVY---GLPL-PNPVTDHTAL-DP------ASSYGAQKAMCELLLNDYSRRGF 160
Query: 187 IDLVTINPAMVI 198
+D T+ V
Sbjct: 161 VDGRTLRLPTVC 172
|
Nucleoside-diphosphate-sugar 4-epimerase has the characteristic active site tetrad and NAD-binding motif of the extended SDR, and is related to more specifically defined epimerases such as UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), which catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup includes Escherichia coli 055:H7 Gne, a UDP-GlcNAc 4-epimerase, essential for O55 antigen synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|187563 cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 5e-05
Identities = 45/161 (27%), Positives = 67/161 (41%), Gaps = 33/161 (20%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKA--SVRDPNDPKKTRHLLALDGASERLQLFKA 67
+ VTGA+G+I + K LL RG V ++ D D + L L G S + K
Sbjct: 1 MKILVTGAAGFIGFHVAKRLLERGDEVVGIDNLNDYYDVRLKEARLELLGKSGGFKFVKG 60
Query: 68 N---------LLEEGSFDSIVDGCDGVCHTASPFYHDA------KDPQVELLDPAVKGTL 112
+ L ++ FD+ V H A A ++P +D + G L
Sbjct: 61 DLEDREALRRLFKDHEFDA-------VIHLA----AQAGVRYSLENPHA-YVDSNIVGFL 108
Query: 113 NVLNSCAKFPSIKRVVL--TSSMAAVLNTGKPRTPDVVVDE 151
N+L C F +K +V +SS+ LNT P + D VD
Sbjct: 109 NLLELCRHFG-VKHLVYASSSSVYG-LNTKMPFSEDDRVDH 147
|
This subgroup contains UDP-D-glucuronic acid 4-epimerase, an extended SDR, which catalyzes the conversion of UDP-alpha-D-glucuronic acid to UDP-alpha-D-galacturonic acid. This group has the SDR's canonical catalytic tetrad and the TGxxGxxG NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 332 |
| >gnl|CDD|215072 PLN00141, PLN00141, Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 5e-05
Identities = 46/141 (32%), Positives = 70/141 (49%), Gaps = 25/141 (17%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69
K V V GA+G +V+ LL++G+ VKA VRD + K + L D + LQ+ +A++
Sbjct: 18 KTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVD---KAKTSLPQDPS---LQIVRADV 71
Query: 70 LEEGS---FDSIVDGCDGV-CHTASPFYHDAKDP-QVELLDPAVKGTLNVLNSCAKFPSI 124
EGS ++I D D V C T D P +V+ GT+N++ +C K +
Sbjct: 72 T-EGSDKLVEAIGDDSDAVICATGFRRSFDPFAPWKVDNF-----GTVNLVEACRKA-GV 124
Query: 125 KRVVLTSS-------MAAVLN 138
R +L SS M +LN
Sbjct: 125 TRFILVSSILVNGAAMGQILN 145
|
Length = 251 |
| >gnl|CDD|187553 cd05242, SDR_a8, atypical (a) SDRs, subgroup 8 | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 6e-05
Identities = 45/201 (22%), Positives = 76/201 (37%), Gaps = 44/201 (21%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69
K+V +TG +G+I L + L + G+ V R P + ++ DG S
Sbjct: 1 KIV-ITGGTGFIGRALTRRLTAAGHEVVVLSRRPGKAEGLAEVITWDGLSLG-------- 51
Query: 70 LEEGSFDSIVDGCDGVCHTA------SPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS 123
+ G D V + A + K E+L ++ T ++ + A P+
Sbjct: 52 ------PWELPGADAVINLAGEPIACRRWTEANKK---EILSSRIESTRVLVEAIANAPA 102
Query: 124 IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSD----PEVCKQSELWYPLSKTLAEDAAW 179
+V++++S + D V+ E S EVCK W E AA
Sbjct: 103 PPKVLISASAVGYYGH----SGDEVLTENSPSGKDFLAEVCKA---W--------EKAAQ 147
Query: 180 KFAKEKSIDLVTINPAMVIGP 200
A E +V + +V+GP
Sbjct: 148 P-ASELGTRVVILRTGVVLGP 167
|
This subgroup contains atypical SDRs of unknown function. Proteins in this subgroup have a glycine-rich NAD(P)-binding motif consensus that resembles that of the extended SDRs, (GXXGXXG or GGXGXXG), but lacks the characteristic active site residues of the SDRs. A Cys often replaces the usual Lys of the YXXXK active site motif, while the upstream Ser is generally present and Arg replaces the usual Asn. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 296 |
| >gnl|CDD|187551 cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase (G4E), subgroup 3, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 13/125 (10%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ VTGA+G + L + L + + D P G+ +++ + ++ +
Sbjct: 1 ILVTGAAGGLGRLLARRLAASPRVIGVDGLDRRRP---------PGSPPKVEYVRLDIRD 51
Query: 72 EGSFDSIVD-GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLT 130
+ D + D V H A + ++ V GT NVL++CA + RVV+T
Sbjct: 52 PAAADVFREREADAVVHLAFILDPPRDGAERHRIN--VDGTQNVLDACAAAG-VPRVVVT 108
Query: 131 SSMAA 135
SS+A
Sbjct: 109 SSVAV 113
|
Members of this bacterial subgroup are identified as possible sugar epimerases, such as UDP-glucose 4 epimerase. However, while the NAD(P)-binding motif is fairly well conserved, not all members retain the canonical active site tetrad of the extended SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 306 |
| >gnl|CDD|187558 cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 1e-04
Identities = 40/140 (28%), Positives = 57/140 (40%), Gaps = 33/140 (23%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALD-GASERLQLFKANLL 70
V VTG +GYI S V LL GY V V D H AL R++ ++ ++
Sbjct: 2 VLVTGGAGYIGSHTVVELLEAGYDV--VVLDNL---SNGHREALPRIEKIRIEFYEGDIR 56
Query: 71 EEGSFDSIVD--GCDGVCHTAS----------P--FYHDAKDPQVELLDPAVKGTLNVLN 116
+ + D + D V H A+ P +Y + V GTLN+L
Sbjct: 57 DRAALDKVFAEHKIDAVIHFAALKAVGESVQKPLKYYDN-----------NVVGTLNLLE 105
Query: 117 SCAKFPSIKRVVLTSSMAAV 136
+ +K V +SS AAV
Sbjct: 106 AMRAH-GVKNFVFSSS-AAV 123
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 323 |
| >gnl|CDD|187540 cd05229, SDR_a3, atypical (a) SDRs, subgroup 3 | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Query: 14 VTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEG 73
V GASG I + + L RG+ V+ R L L G ++ A+ ++
Sbjct: 4 VLGASGPIGREVARELRRRGWDVRLVSRSG------SKLAWLPGV----EIVAADAMDAS 53
Query: 74 SFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKG 110
S + G D + H A+P Y ++ L++ V
Sbjct: 54 SVIAAARGADVIYHCANPAYTRWEELFPPLMENVVAA 90
|
These atypical SDR family members of unknown function have a glycine-rich NAD(P)-binding motif consensus that is very similar to the extended SDRs, GXXGXXG. Generally, this group has poor conservation of the active site tetrad, However, individual sequences do contain matches to the YXXXK active site motif, and generally Tyr or Asn in place of the upstream Ser found in most SDRs. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 302 |
| >gnl|CDD|176183 cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 3e-04
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASE 60
V VTGA+G + S V +L GYTV A + +L +L GASE
Sbjct: 149 PVLVTGATGGVGSIAVAILAKLGYTVVALTGKEE---QADYLKSL-GASE 194
|
Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325 |
| >gnl|CDD|187572 cd05262, SDR_a7, atypical (a) SDRs, subgroup 7 | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 10/87 (11%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
V VTGA+G+I S +V+ L++ G+ V R K L GA Q+ + +L +
Sbjct: 3 VFVTGATGFIGSAVVRELVAAGHEVVGLARSDAGAAK----LEAAGA----QVHRGDLED 54
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKD 98
D V H A F HD +
Sbjct: 55 LDILRKAAAEADAVIHLA--FTHDFDN 79
|
This subgroup contains atypical SDRs of unknown function. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 291 |
| >gnl|CDD|224012 COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 3e-04
Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 14/129 (10%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
V VTG +GYI S V+ LL G+ V V D H +AL + + ++ +LL+
Sbjct: 3 VLVTGGAGYIGSHTVRQLLKTGHEV--VVLDNL---SNGHKIALL--KLQFKFYEGDLLD 55
Query: 72 EGSFDSIVD--GCDGVCHTASPFY--HDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRV 127
++ + D V H A+ ++P ++ D V GTLN++ + + +K+
Sbjct: 56 RALLTAVFEENKIDAVVHFAASISVGESVQNP-LKYYDNNVVGTLNLIEAMLQT-GVKKF 113
Query: 128 VLTSSMAAV 136
+ +S+ AAV
Sbjct: 114 IFSST-AAV 121
|
Length = 329 |
| >gnl|CDD|187570 cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 4e-04
Identities = 32/133 (24%), Positives = 48/133 (36%), Gaps = 20/133 (15%)
Query: 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLL 70
+TG +G S+L + LL +GY V VR + R L +R+ L +L
Sbjct: 1 RALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTDRIDH-LYINKDRITLHYGDLT 59
Query: 71 EEGSFDSIVDGCDGVCHTASP--FYHDA---------KDPQVELLDPAVKGTLNVLNSCA 119
+ S ++ P YH A DP+ + GTLN+L +
Sbjct: 60 DSSSLRRAIE-------KVRPDEIYHLAAQSHVKVSFDDPE-YTAEVNAVGTLNLLEAIR 111
Query: 120 KFPSIKRVVLTSS 132
R SS
Sbjct: 112 ILGLDARFYQASS 124
|
GDP-mannose 4,6 dehydratase, a homodimeric SDR, catalyzes the NADP(H)-dependent conversion of GDP-(D)-mannose to GDP-4-keto, 6-deoxy-(D)-mannose in the fucose biosynthesis pathway. These proteins have the canonical active site triad and NAD-binding pattern, however the active site Asn is often missing and may be substituted with Asp. A Glu residue has been identified as an important active site base. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|187632 cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 28/149 (18%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGA-SERLQLFKAN 68
KVV +TG S I L L ++GY V A+ R+P L +L ++ L++ + +
Sbjct: 1 KVVLITGCSSGIGLALALALAAQGYRVIATARNP------DKLESLGELLNDNLEVLELD 54
Query: 69 LLEEGSFDSIVDGC-------DGVCHTA-----SPFYHDAKDPQV-ELLDPAVKGTLNVL 115
+ +E S + V D + + A P + +V EL + V G L V
Sbjct: 55 VTDEESIKAAVKEVIERFGRIDVLVNNAGYGLFGPL-EETSIEEVRELFEVNVFGPLRVT 113
Query: 116 NSCAKFPSIK-----RVVLTSSMAAVLNT 139
+ P ++ R+V SS+A ++ T
Sbjct: 114 RAFL--PLMRKQGSGRIVNVSSVAGLVPT 140
|
17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 248 |
| >gnl|CDD|187576 cd05266, SDR_a4, atypical (a) SDRs, subgroup 4 | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 4e-04
Identities = 29/138 (21%), Positives = 47/138 (34%), Gaps = 32/138 (23%)
Query: 19 GYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI 78
GY+ L + LL++G+ V + R P + + L + + +
Sbjct: 7 GYLGQRLARQLLAQGWQVTGTTRSP------------EKLAADRPAGVTPLAADLTQPGL 54
Query: 79 VDGCDG-VCHTASPF--YHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAA 135
+ D V P Y DP + L A+ P+++RV+ SS
Sbjct: 55 LADVDHLVISLPPPAGSYRGGYDPGLRALLDALAQL----------PAVQRVIYLSS--- 101
Query: 136 VLNTG-KPRTPDVVVDET 152
TG VDET
Sbjct: 102 ---TGVYGDQQGEWVDET 116
|
Atypical SDRs in this subgroup are poorly defined, one member is identified as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is related to, but is different from, the archetypical SDRs, GXGXXG. This subgroup also lacks most of the characteristic active site residues of the SDRs; however, the upstream Ser is present at the usual place, and some potential catalytic residues are present in place of the usual YXXXK active site motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 251 |
| >gnl|CDD|178263 PLN02657, PLN02657, 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 7e-04
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN----DPKKTRHLLALDGAS 59
V V GA+GYI ++V+ L+ RGY V A R+ + K L GA
Sbjct: 57 EPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAE 114
|
Length = 390 |
| >gnl|CDD|177883 PLN02240, PLN02240, UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 8e-04
Identities = 40/150 (26%), Positives = 61/150 (40%), Gaps = 33/150 (22%)
Query: 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND---PKKTRHLLALDGA-SE 60
+ G+ + VTG +GYI S V LL GY V V D D + R + L G +
Sbjct: 1 MSLMGRTILVTGGAGYIGSHTVLQLLLAGYKV--VVIDNLDNSSEEALRRVKELAGDLGD 58
Query: 61 RLQLFKANLLEEGSFDSIVDGC--DGVCHTAS------------PFYHDAKDPQVELLDP 106
L K +L ++ + + + D V H A +Y +
Sbjct: 59 NLVFHKVDLRDKEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDN----------- 107
Query: 107 AVKGTLNVLNSCAKFPSIKRVVLTSSMAAV 136
+ GT+N+L AK K++V +SS A V
Sbjct: 108 NLVGTINLLEVMAKH-GCKKLVFSSS-ATV 135
|
Length = 352 |
| >gnl|CDD|187537 cd05226, SDR_e_a, Extended (e) and atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 8e-04
Identities = 33/135 (24%), Positives = 56/135 (41%), Gaps = 14/135 (10%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ + GA+G+I L + LL +G+ V VR+ K E + + + +L +
Sbjct: 1 ILILGATGFIGRALARELLEQGHEVTLLVRNTKRLSKE--------DQEPVAVVEGDLRD 52
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131
S V G D V H A +V+ V+GT NVL + + +K + S
Sbjct: 53 LDSLSDAVQGVDVVIHLAGAPRDTRDFCEVD-----VEGTRNVLEAAKEAG-VKHFIFIS 106
Query: 132 SMAAVLNTGKPRTPD 146
S+ A + + P
Sbjct: 107 SLGAYGDLHEETEPS 121
|
Extended or atypical short-chain dehydrogenases/reductases (SDRs, aka tyrosine-dependent oxidoreductases) are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 176 |
| >gnl|CDD|213592 TIGR01179, galE, UDP-glucose-4-epimerase GalE | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 8e-04
Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 12/144 (8%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ VTG +GYI S V+ LL G+ V + D L + + + + +L +
Sbjct: 2 ILVTGGAGYIGSHTVRQLLESGHEV--VILDNLSNGSREALPRGERITP-VTFVEGDLRD 58
Query: 72 EGSFDSIVDG--CDGVCHTASPFY--HDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRV 127
D + + D V H A + P ++ V GTLN+L + + +K+
Sbjct: 59 RELLDRLFEEHKIDAVIHFAGLIAVGESVQKP-LKYYRNNVVGTLNLLEAMQQA-GVKKF 116
Query: 128 VLTSSMAAVLNTGKPRTPDVVVDE 151
+ +SS AAV G+P + + D
Sbjct: 117 IFSSS-AAVY--GEPSSIPISEDS 137
|
Alternate name: UDPgalactose 4-epimerase This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from This model and described by a separate model [Energy metabolism, Sugars]. Length = 328 |
| >gnl|CDD|187656 cd08953, KR_2_SDR_x, ketoreductase (KR), subgroup 2, complex (x) SDRs | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.001
Identities = 38/153 (24%), Positives = 59/153 (38%), Gaps = 24/153 (15%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVR-------DPNDPKKTRHLLALDGASE 60
G V VTG +G I L + L R A + P + K + L AL+
Sbjct: 204 PGGVYLVTGGAGGIGRALARALARR---YGARLVLLGRSPLPPEEEWKAQTLAALEALGA 260
Query: 61 RLQLFKANLLEEGSFDSIVD-------GCDGVCHTA---SPFYHDAKDPQ--VELLDPAV 108
R+ A++ + + +++ DGV H A K + +L P V
Sbjct: 261 RVLYISADVTDAAAVRRLLEKVRERYGAIDGVIHAAGVLRDALLAQKTAEDFEAVLAPKV 320
Query: 109 KGTLNVLNSCAKFPSIKRVVLTSSMAAVL-NTG 140
G LN+ + A P + VL SS++A G
Sbjct: 321 DGLLNLAQALADEP-LDFFVLFSSVSAFFGGAG 352
|
Ketoreductase, a module of the multidomain polyketide synthase (PKS), has 2 subdomains, each corresponding to a SDR family monomer. The C-terminal subdomain catalyzes the NADPH-dependent reduction of the beta-carbonyl of a polyketide to a hydroxyl group, a step in the biosynthesis of polyketides, such as erythromycin. The N-terminal subdomain, an interdomain linker, is a truncated Rossmann fold which acts to stabilizes the catalytic subdomain. Unlike typical SDRs, the isolated domain does not oligomerize but is composed of 2 subdomains, each resembling an SDR monomer. The active site resembles that of typical SDRs, except that the usual positions of the catalytic Asn and Tyr are swapped, so that the canonical YXXXK motif changes to YXXXN. Modular PKSs are multifunctional structures in which the makeup recapitulates that found in (and may have evolved from) FAS. Polyketide synthesis also proceeds via the addition of 2-carbon units as in fatty acid synthesis. The complex SDR NADP-binding motif, GGXGXXG, is often present, but is not strictly conserved in each instance of the module. This subfamily includes both KR domains of the Bacillus subtilis Pks J,-L, and PksM, and all three KR domains of PksN, components of the megacomplex bacillaene synthase, which synthesizes the antibiotic bacillaene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 436 |
| >gnl|CDD|225462 COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.001
Identities = 39/192 (20%), Positives = 67/192 (34%), Gaps = 37/192 (19%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ + GASG S ++K L RG+ V A VR+ + A + + + + ++ +
Sbjct: 3 IAIIGASGKAGSRILKEALKRGHEVTAIVRNA----------SKLAARQGVTILQKDIFD 52
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVL-- 129
S S + G D V D D ++ L K + R+++
Sbjct: 53 LTSLASDLAGHDAVISAFGAGASDN--------DELHSKSIEALIEALKGAGVPRLLVVG 104
Query: 130 -TSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSID 188
S+ T +VD F + P + AE EKS+D
Sbjct: 105 GAGSLEIDEGT-------RLVDTPDFPAE--------YKPEALAQAEFLD-SLRAEKSLD 148
Query: 189 LVTINPAMVIGP 200
++PA P
Sbjct: 149 WTFVSPAAFFEP 160
|
Length = 211 |
| >gnl|CDD|187612 cd05354, SDR_c7, classical (c) SDR, subgroup 7 | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.001
Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 22/145 (15%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGYT-VKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
K V VTGA+ I V+ LL+ G V A+VRDP HL+A G ++ +
Sbjct: 3 DKTVLVTGANRGIGKAFVESLLAHGAKKVYAAVRDPG---SAAHLVAKYGD--KVVPLRL 57
Query: 68 NLLEEGSFDSIVDGCD---------GVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSC 118
++ + S + GV A+ A + + +D V G L +
Sbjct: 58 DVTDPESIKAAAAQAKDVDVVINNAGVLKPATLLEEGALEALKQEMDVNVFGLLRLAQ-- 115
Query: 119 AKFPSIKR-----VVLTSSMAAVLN 138
A P +K +V +S+A++ N
Sbjct: 116 AFAPVLKANGGGAIVNLNSVASLKN 140
|
These proteins are members of the classical SDR family, with a canonical active site triad (and also an active site Asn) and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 235 |
| >gnl|CDD|187546 cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 40/186 (21%), Positives = 65/186 (34%), Gaps = 31/186 (16%)
Query: 11 VVCVTGASGYIASWLVKLLLSRGYTVK--ASVRDPNDPKKTRHL----------LALDGA 58
V +TGA+G++ ++L++ LL R K VR ++ L L +
Sbjct: 1 TVLLTGATGFLGAYLLRELLKRKNVSKIYCLVRAKDEEAALERLIDNLKEYGLNLWDELE 60
Query: 59 SERLQ-----LFKANL-LEEGSFDSIVDGCDGVCHTASP---FYHDAKDPQVELLDPAVK 109
R++ L K NL L + + + + D + H + Y EL V
Sbjct: 61 LSRIKVVVGDLSKPNLGLSDDDYQELAEEVDVIIHNGANVNWVYPYE-----ELKPANVL 115
Query: 110 GTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPL 169
GT +L A K + S+++ D D E Y
Sbjct: 116 GTKELLKLAATGKL-KPLHFVSTLSVFSAEEYNALDDEESD----DMLESQNGLPNGYIQ 170
Query: 170 SKTLAE 175
SK +AE
Sbjct: 171 SKWVAE 176
|
This family consists of an SDR module of multidomain proteins identified as putative polyketide sythases fatty acid synthases (FAS), and nonribosomal peptide synthases, among others. However, unlike the usual ketoreductase modules of FAS and polyketide synthase, these domains are related to the extended SDRs, and have canonical NAD(P)-binding motifs and an active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 290 |
| >gnl|CDD|212493 cd08932, HetN_like_SDR_c, HetN oxidoreductase-like, classical (c) SDR | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.003
Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 7/84 (8%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69
KV VTGAS I + + L GY V +R+P D A G E + +
Sbjct: 1 KVALVTGASRGIGIEIARALARDGYRVSLGLRNPEDLAALS---ASGGDVEAVPYDARDP 57
Query: 70 LEEGSF----DSIVDGCDGVCHTA 89
+ + D + H A
Sbjct: 58 EDARALVDALRDRFGRIDVLVHNA 81
|
This subgroup includes Anabaena sp. strain PCC 7120 HetN, a putative oxidoreductase involved in heterocyst differentiation, and related proteins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 223 |
| >gnl|CDD|187660 cd08957, WbmH_like_SDR_e, Bordetella bronchiseptica enzymes WbmH and WbmG-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 38.3 bits (89), Expect = 0.003
Identities = 51/193 (26%), Positives = 79/193 (40%), Gaps = 28/193 (14%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
V +TG +G I S L++ LL RG+ V V D + HL L + + ++ +
Sbjct: 3 VLITGGAGQIGSHLIEHLLERGHQV--VVIDNFATGRREHLPDHPN----LTVVEGSIAD 56
Query: 72 EGSFDSIVDGC--DGVCHTASPFYHDAKDPQVELLDPA--VKGTLNVLNSCAKFPSIKRV 127
+ D + D V HTA+ + KDP D V G NV+ + K +KR+
Sbjct: 57 KALVDKLFGDFKPDAVVHTAAAY----KDPDDWYEDTLTNVVGGANVVQAAKKA-GVKRL 111
Query: 128 VLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSI 187
+ + A+ KP + +D S Y +SKT E + + +
Sbjct: 112 IYFQT--ALCYGLKPMQQPIRLDHPRAP----PGSS---YAISKTAGEY----YLELSGV 158
Query: 188 DLVTINPAMVIGP 200
D VT A V GP
Sbjct: 159 DFVTFRLANVTGP 171
|
Bordetella bronchiseptica enzymes WbmH and WbmG, and related proteins. This subgroup exhibits the active site tetrad and NAD-binding motif of the extended SDR family. It has been proposed that the active site in Bordetella WbmG and WbmH cannot function as an epimerase, and that it plays a role in O-antigen synthesis pathway from UDP-2,3-diacetamido-2,3-dideoxy-l-galacturonic acid. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 307 |
| >gnl|CDD|224014 COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.004
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASE--RLQLFK 66
GKV +TG +G S+L +LLL +GY V R + R L D RL L
Sbjct: 2 GKVALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHY 61
Query: 67 ANLLEEGSFDSIVD 80
+L + + I++
Sbjct: 62 GDLTDSSNLLRILE 75
|
Length = 345 |
| >gnl|CDD|178298 PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Score = 37.9 bits (88), Expect = 0.004
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHL 52
+ +C+TGA G+IAS + + L + G+ + AS D KK H+
Sbjct: 18 PSEKLRICITGAGGFIASHIARRLKAEGHYIIAS-----DWKKNEHM 59
|
Length = 370 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 281 | |||
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 100.0 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 100.0 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 100.0 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 100.0 | |
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 100.0 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 100.0 | |
| COG1088 | 340 | RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope | 100.0 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 100.0 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 100.0 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 100.0 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 100.0 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 100.0 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 100.0 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 100.0 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 100.0 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 100.0 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 100.0 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 100.0 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 100.0 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 100.0 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 100.0 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 100.0 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 100.0 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 100.0 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 100.0 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 100.0 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 100.0 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 100.0 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 100.0 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 100.0 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 100.0 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 100.0 | |
| PLN02996 | 491 | fatty acyl-CoA reductase | 100.0 | |
| KOG0747 | 331 | consensus Putative NAD+-dependent epimerases [Carb | 100.0 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 100.0 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 100.0 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 100.0 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 100.0 | |
| KOG1429 | 350 | consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro | 100.0 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 100.0 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 100.0 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 100.0 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 100.0 | |
| KOG1371 | 343 | consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo | 100.0 | |
| KOG1430 | 361 | consensus C-3 sterol dehydrogenase/3-beta-hydroxys | 99.97 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 99.97 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 99.97 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.97 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 99.97 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 99.97 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 99.97 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 99.97 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 99.97 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 99.96 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 99.96 | |
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 99.96 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 99.96 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 99.96 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.96 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 99.95 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 99.95 | |
| COG1089 | 345 | Gmd GDP-D-mannose dehydratase [Cell envelope bioge | 99.95 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 99.95 | |
| KOG1431 | 315 | consensus GDP-L-fucose synthetase [Carbohydrate tr | 99.95 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 99.95 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 99.95 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 99.95 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 99.94 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 99.94 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 99.94 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 99.94 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 99.94 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 99.94 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 99.94 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 99.94 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 99.94 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.94 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 99.94 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 99.94 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 99.94 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.94 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 99.94 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 99.94 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 99.94 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 99.94 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.94 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 99.94 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 99.94 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 99.94 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 99.94 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 99.93 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 99.93 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 99.93 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 99.93 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.93 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 99.93 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 99.93 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 99.93 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 99.93 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 99.93 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.93 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 99.93 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 99.93 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.93 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 99.93 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 99.93 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 99.93 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 99.93 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 99.93 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 99.93 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.93 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.93 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 99.93 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 99.93 | |
| PRK05717 | 255 | oxidoreductase; Validated | 99.93 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 99.93 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 99.93 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 99.93 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 99.93 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 99.93 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 99.93 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.93 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 99.93 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 99.93 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.93 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 99.92 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK08643 | 256 | acetoin reductase; Validated | 99.92 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 99.92 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 99.92 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 99.92 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.92 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 99.92 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 99.92 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 99.92 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 99.92 | |
| KOG2865 | 391 | consensus NADH:ubiquinone oxidoreductase, NDUFA9/3 | 99.92 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.92 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 99.92 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 99.92 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.92 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 99.92 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 99.92 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 99.92 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 99.92 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 99.91 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.91 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.91 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 99.91 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.91 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 99.91 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 99.91 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 99.91 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 99.91 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.91 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 99.91 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 99.91 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 99.91 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.91 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 99.91 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 99.91 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.91 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 99.91 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 99.91 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.91 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.9 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 99.9 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.9 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 99.9 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.9 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.9 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.9 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 99.9 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.9 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.9 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 99.9 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 99.9 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.9 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.9 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 99.89 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 99.89 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 99.89 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 99.89 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.89 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 99.89 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 99.89 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 99.89 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 99.88 | |
| KOG1221 | 467 | consensus Acyl-CoA reductase [Lipid transport and | 99.88 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.88 | |
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.88 | |
| KOG4169 | 261 | consensus 15-hydroxyprostaglandin dehydrogenase an | 99.88 | |
| TIGR01831 | 239 | fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas | 99.88 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 99.88 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 99.88 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.88 | |
| TIGR02685 | 267 | pter_reduc_Leis pteridine reductase. Pteridine red | 99.88 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 99.87 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 99.87 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.87 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 99.87 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.87 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 99.87 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 99.86 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 99.86 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 99.86 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.86 | |
| KOG2774 | 366 | consensus NAD dependent epimerase [General functio | 99.86 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 99.86 | |
| KOG0725 | 270 | consensus Reductases with broad range of substrate | 99.85 | |
| PLN02730 | 303 | enoyl-[acyl-carrier-protein] reductase | 99.85 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 99.84 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 99.84 | |
| KOG1372 | 376 | consensus GDP-mannose 4,6 dehydratase [Carbohydrat | 99.83 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.83 | |
| KOG1200 | 256 | consensus Mitochondrial/plastidial beta-ketoacyl-A | 99.83 | |
| PLN00015 | 308 | protochlorophyllide reductase | 99.82 | |
| KOG1207 | 245 | consensus Diacetyl reductase/L-xylulose reductase | 99.81 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 99.8 | |
| smart00822 | 180 | PKS_KR This enzymatic domain is part of bacterial | 99.8 | |
| KOG1208 | 314 | consensus Dehydrogenases with different specificit | 99.8 | |
| PRK06300 | 299 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.79 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 99.79 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 99.78 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 99.77 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 99.76 | |
| COG1028 | 251 | FabG Dehydrogenases with different specificities ( | 99.75 | |
| KOG1610 | 322 | consensus Corticosteroid 11-beta-dehydrogenase and | 99.75 | |
| KOG1611 | 249 | consensus Predicted short chain-type dehydrogenase | 99.75 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 99.74 | |
| PRK12428 | 241 | 3-alpha-hydroxysteroid dehydrogenase; Provisional | 99.73 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 99.73 | |
| KOG1210 | 331 | consensus Predicted 3-ketosphinganine reductase [S | 99.7 | |
| KOG1199 | 260 | consensus Short-chain alcohol dehydrogenase/3-hydr | 99.69 | |
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 99.68 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 99.68 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 99.64 | |
| KOG1204 | 253 | consensus Predicted dehydrogenase [Secondary metab | 99.6 | |
| KOG1203 | 411 | consensus Predicted dehydrogenase [Carbohydrate tr | 99.51 | |
| KOG4039 | 238 | consensus Serine/threonine kinase TIP30/CC3 [Signa | 99.48 | |
| KOG3019 | 315 | consensus Predicted nucleoside-diphosphate sugar e | 99.48 | |
| KOG4288 | 283 | consensus Predicted oxidoreductase [General functi | 99.45 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 99.43 | |
| KOG1478 | 341 | consensus 3-keto sterol reductase [Lipid transport | 99.41 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 99.32 | |
| COG0623 | 259 | FabI Enoyl-[acyl-carrier-protein] | 99.25 | |
| PLN00106 | 323 | malate dehydrogenase | 99.21 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 99.18 | |
| PRK13656 | 398 | trans-2-enoyl-CoA reductase; Provisional | 99.1 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 98.99 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.96 | |
| PRK09620 | 229 | hypothetical protein; Provisional | 98.89 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 98.81 | |
| PRK06732 | 229 | phosphopantothenate--cysteine ligase; Validated | 98.77 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 98.7 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 98.66 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 98.66 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 98.6 | |
| PRK05579 | 399 | bifunctional phosphopantothenoylcysteine decarboxy | 98.58 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 98.54 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 98.52 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 98.51 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 98.46 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 98.46 | |
| TIGR02114 | 227 | coaB_strep phosphopantothenate--cysteine ligase, s | 98.45 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 98.38 | |
| KOG2733 | 423 | consensus Uncharacterized membrane protein [Functi | 98.31 | |
| TIGR00521 | 390 | coaBC_dfp phosphopantothenoylcysteine decarboxylas | 98.3 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 98.24 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 98.18 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 98.17 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 98.11 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 98.11 | |
| PF04127 | 185 | DFP: DNA / pantothenate metabolism flavoprotein; I | 98.1 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 98.08 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 98.03 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 98.03 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 98.03 | |
| KOG4022 | 236 | consensus Dihydropteridine reductase DHPR/QDPR [Am | 98.02 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 98.02 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 98.02 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 98.0 | |
| COG4982 | 866 | 3-oxoacyl-[acyl-carrier protein] | 97.99 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 97.99 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 97.99 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 97.98 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 97.93 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 97.92 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 97.89 | |
| PLN02602 | 350 | lactate dehydrogenase | 97.86 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.82 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.82 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 97.81 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 97.8 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 97.79 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 97.77 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 97.75 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 97.75 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.74 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 97.73 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 97.72 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 97.7 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 97.66 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 97.6 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 97.58 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 97.56 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 97.55 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 97.55 | |
| KOG1494 | 345 | consensus NAD-dependent malate dehydrogenase [Ener | 97.54 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 97.52 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 97.52 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 97.51 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 97.5 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.5 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.48 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 97.47 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 97.47 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 97.47 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 97.46 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 97.45 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 97.44 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 97.43 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 97.43 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 97.4 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 97.4 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.39 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 97.39 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 97.36 | |
| PRK08223 | 287 | hypothetical protein; Validated | 97.36 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 97.33 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 97.33 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 97.33 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 97.32 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 97.31 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 97.3 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 97.29 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 97.28 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 97.27 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 97.26 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 97.25 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 97.25 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 97.22 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 97.21 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.21 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 97.18 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 97.18 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 97.15 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.14 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 97.13 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 97.12 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 97.11 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 97.11 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 97.1 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 97.1 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 97.1 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.07 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 97.06 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 97.06 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 97.06 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 97.05 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 97.05 | |
| PRK13982 | 475 | bifunctional SbtC-like/phosphopantothenoylcysteine | 97.04 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 97.02 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 97.01 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.0 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.96 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 96.96 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 96.95 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.95 | |
| PRK08057 | 248 | cobalt-precorrin-6x reductase; Reviewed | 96.94 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.93 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 96.92 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 96.9 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 96.9 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 96.89 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 96.89 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 96.88 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 96.87 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 96.87 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.87 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 96.86 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 96.86 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 96.85 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.82 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 96.82 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 96.75 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 96.75 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 96.72 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 96.71 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 96.71 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 96.7 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 96.69 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 96.69 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 96.68 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 96.68 | |
| KOG1198 | 347 | consensus Zinc-binding oxidoreductase [Energy prod | 96.68 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 96.67 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 96.66 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 96.66 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 96.66 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 96.66 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 96.65 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 96.63 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.62 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.62 | |
| cd08259 | 332 | Zn_ADH5 Alcohol dehydrogenases of the MDR family. | 96.6 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 96.6 | |
| PRK07411 | 390 | hypothetical protein; Validated | 96.59 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 96.59 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 96.59 | |
| KOG2018 | 430 | consensus Predicted dinucleotide-utilizing enzyme | 96.58 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 96.58 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 96.57 | |
| PLN02928 | 347 | oxidoreductase family protein | 96.57 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 96.56 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 96.56 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 96.55 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.54 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 96.54 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 96.53 | |
| KOG0172 | 445 | consensus Lysine-ketoglutarate reductase/saccharop | 96.53 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 96.53 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 96.52 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 96.52 | |
| PF08643 | 299 | DUF1776: Fungal family of unknown function (DUF177 | 96.5 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 96.5 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 96.48 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.47 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 96.45 | |
| PRK09288 | 395 | purT phosphoribosylglycinamide formyltransferase 2 | 96.43 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 96.43 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 96.41 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 96.4 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 96.4 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.39 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 96.38 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 96.38 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 96.37 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 96.34 | |
| cd08253 | 325 | zeta_crystallin Zeta-crystallin with NADP-dependen | 96.34 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 96.32 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 96.32 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 96.32 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 96.32 | |
| PF02571 | 249 | CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: | 96.31 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 96.29 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 96.29 |
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-48 Score=317.37 Aligned_cols=273 Identities=61% Similarity=0.975 Sum_probs=241.7
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 87 (281)
.+++|+|||||||||++|+++|+++||.|++++|++++......+..+.....+.+.+.+|++|+++++.+++++|+|||
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH 84 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFH 84 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEE
Confidence 57899999999999999999999999999999999988655455555555455699999999999999999999999999
Q ss_pred ecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchh
Q 023515 88 TASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWY 167 (281)
Q Consensus 88 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y 167 (281)
.|.++.....++..++++.++.|+.|++++|++...++|+|++||+++..++.....+...++|+.+..++.......||
T Consensus 85 ~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS~aAv~~~~~~~~~~~vvdE~~wsd~~~~~~~~~~Y 164 (327)
T KOG1502|consen 85 TASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSSTAAVRYNGPNIGENSVVDEESWSDLDFCRCKKLWY 164 (327)
T ss_pred eCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEEeccHHHhccCCcCCCCCcccccccCCcHHHHHhhHHHH
Confidence 99997776555555899999999999999999984599999999999998775566778889999998888766667899
Q ss_pred hhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC-CCCCCCCccceeHHHHHHHHHHhhcC
Q 023515 168 PLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA-QTYPNVTFGWVNVKDVANAHIQAFEV 246 (281)
Q Consensus 168 ~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~D~a~~i~~~~~~ 246 (281)
..||..+|+.+.+++++.|++.+++.|+.|+||...+..+.....+.+.+.|. ..+.+....|||++|+|.+.+.++++
T Consensus 165 ~~sK~lAEkaAw~fa~e~~~~lv~inP~lV~GP~l~~~l~~s~~~~l~~i~G~~~~~~n~~~~~VdVrDVA~AHv~a~E~ 244 (327)
T KOG1502|consen 165 ALSKTLAEKAAWEFAKENGLDLVTINPGLVFGPGLQPSLNSSLNALLKLIKGLAETYPNFWLAFVDVRDVALAHVLALEK 244 (327)
T ss_pred HHHHHHHHHHHHHHHHhCCccEEEecCCceECCCcccccchhHHHHHHHHhcccccCCCCceeeEeHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999998876666667777778885 66667777799999999999999999
Q ss_pred CCCCccEEEecCCCCHHHHHHHHHHhCCCCCCCC
Q 023515 247 PSANGRYCLVERVSHYSEIVNIIRELYPAFQLPE 280 (281)
Q Consensus 247 ~~~~g~~~~~~~~~t~~e~~~~i~~~~~~~~~p~ 280 (281)
++..|+|+++++..++.|+++.+.+.+|.+++|.
T Consensus 245 ~~a~GRyic~~~~~~~~ei~~~l~~~~P~~~ip~ 278 (327)
T KOG1502|consen 245 PSAKGRYICVGEVVSIKEIADILRELFPDYPIPK 278 (327)
T ss_pred cccCceEEEecCcccHHHHHHHHHHhCCCCCCCC
Confidence 9999999999988889999999999999988884
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=302.08 Aligned_cols=273 Identities=59% Similarity=0.997 Sum_probs=214.6
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
..+++|||||||||||++++++|+++|++|+++.|+..+......+........+++++.+|+++++.+.++++++|+||
T Consensus 3 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 82 (322)
T PLN02986 3 GGGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVF 82 (322)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEE
Confidence 34789999999999999999999999999999999876544433322211112468999999999999999999999999
Q ss_pred EecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCch
Q 023515 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (281)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 166 (281)
|+|+.......++....+++|+.|+.+++++|++..++++||++||.+++.....+..+...++|+++..|..+..+.++
T Consensus 83 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~~~~ 162 (322)
T PLN02986 83 HTASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKRVILTSSTAAVLFRQPPIEANDVVDETFFSDPSLCRETKNW 162 (322)
T ss_pred EeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEecchhheecCCccCCCCCCcCcccCCChHHhhccccc
Confidence 99997543333444467899999999999999985468899999998765322112223445788877665433334577
Q ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcC
Q 023515 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEV 246 (281)
Q Consensus 167 Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~ 246 (281)
|+.+|.++|.+++.+.++++++++++||+++|||...+........+.....+.+.++.+.++|+|++|+|++++.++++
T Consensus 163 Y~~sK~~aE~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~Dva~a~~~al~~ 242 (322)
T PLN02986 163 YPLSKILAENAAWEFAKDNGIDMVVLNPGFICGPLLQPTLNFSVELIVDFINGKNLFNNRFYRFVDVRDVALAHIKALET 242 (322)
T ss_pred hHHHHHHHHHHHHHHHHHhCCeEEEEcccceeCCCCCCCCCccHHHHHHHHcCCCCCCCcCcceeEHHHHHHHHHHHhcC
Confidence 99999999999999998889999999999999998665433344555556666655667778999999999999999998
Q ss_pred CCCCccEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 023515 247 PSANGRYCLVERVSHYSEIVNIIRELYPAFQLP 279 (281)
Q Consensus 247 ~~~~g~~~~~~~~~t~~e~~~~i~~~~~~~~~p 279 (281)
+...|.||++++.+++.|+++.+.+.+|...+|
T Consensus 243 ~~~~~~yni~~~~~s~~e~~~~i~~~~~~~~~~ 275 (322)
T PLN02986 243 PSANGRYIIDGPIMSVNDIIDILRELFPDLCIA 275 (322)
T ss_pred cccCCcEEEecCCCCHHHHHHHHHHHCCCCCCC
Confidence 776679999888899999999999999865544
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-43 Score=300.99 Aligned_cols=271 Identities=81% Similarity=1.303 Sum_probs=210.9
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 87 (281)
++|+|||||||||||++++++|+++|++|++++|+.........+........+++++++|++|++.+..+++++|+|||
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 46899999999999999999999999999999998654332222221111124689999999999999999999999999
Q ss_pred ecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceee-ecCCCCCCCCeeeecCCCCChhhhccCCch
Q 023515 88 TASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAV-LNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (281)
Q Consensus 88 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~-~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 166 (281)
+|++......++....+++|+.++.+++++|.+..++++|||+||.+++ ++.. +..+..+++|+.+..|..+....++
T Consensus 83 ~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~SS~~~~~y~~~-~~~~~~~~~E~~~~~p~~~~~~~~~ 161 (322)
T PLN02662 83 TASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVTSSMAAVAYNGK-PLTPDVVVDETWFSDPAFCEESKLW 161 (322)
T ss_pred eCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEccCHHHhcCCCc-CCCCCCcCCcccCCChhHhhcccch
Confidence 9997544333333478899999999999999886467899999998653 3221 1122345788877666433333457
Q ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcC
Q 023515 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEV 246 (281)
Q Consensus 167 Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~ 246 (281)
|+.+|..+|++++.+.++++++++++||+++|||...+........+.++..+.+..+.+.++|+|++|+|++++.++++
T Consensus 162 Y~~sK~~~E~~~~~~~~~~~~~~~~lRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~ 241 (322)
T PLN02662 162 YVLSKTLAEEAAWKFAKENGIDMVTINPAMVIGPLLQPTLNTSAEAILNLINGAQTFPNASYRWVDVRDVANAHIQAFEI 241 (322)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEEeCCcccCCCCCCCCCchHHHHHHHhcCCccCCCCCcCeEEHHHHHHHHHHHhcC
Confidence 99999999999999988889999999999999998655433334455555555555667889999999999999999998
Q ss_pred CCCCccEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 023515 247 PSANGRYCLVERVSHYSEIVNIIRELYPAFQLP 279 (281)
Q Consensus 247 ~~~~g~~~~~~~~~t~~e~~~~i~~~~~~~~~p 279 (281)
+...|.||+++..++++|+++.+.+.++..++|
T Consensus 242 ~~~~~~~~~~g~~~s~~e~~~~i~~~~~~~~~~ 274 (322)
T PLN02662 242 PSASGRYCLVERVVHYSEVVKILHELYPTLQLP 274 (322)
T ss_pred cCcCCcEEEeCCCCCHHHHHHHHHHHCCCCCCC
Confidence 766678998888899999999999998766555
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-42 Score=294.61 Aligned_cols=270 Identities=59% Similarity=0.974 Sum_probs=212.1
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 87 (281)
.+|+||||||+||||++++++|+++|++|++++|+.........+........+++++++|++|.+.+.++++++|+|||
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih 83 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH 83 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence 37899999999999999999999999999999988765433222211111124688999999999999999999999999
Q ss_pred ecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCch
Q 023515 88 TASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (281)
Q Consensus 88 ~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 166 (281)
+||..... ..+.+...+++|+.++.+++++|.+.++.++||++||..++++......+..+++|+.+..|.....+.++
T Consensus 84 ~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~~~~ 163 (325)
T PLN02989 84 TASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEERKQW 163 (325)
T ss_pred eCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCcCCCCchhHhcccccc
Confidence 99964322 23445688899999999999999986456899999998777643211123456788888776533333467
Q ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcC
Q 023515 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEV 246 (281)
Q Consensus 167 Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~ 246 (281)
|+.+|.++|.+++.+.++++++++++||+++|||.+.+........+..+..+.+..+.+.++|+|++|+|++++.++++
T Consensus 164 Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~~~i~~~~~~~~~~~~~~r~~i~v~Dva~a~~~~l~~ 243 (325)
T PLN02989 164 YVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPILQPTLNFSVAVIVELMKGKNPFNTTHHRFVDVRDVALAHVKALET 243 (325)
T ss_pred hHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCCCCCCCCchHHHHHHHHcCCCCCCCcCcCeeEHHHHHHHHHHHhcC
Confidence 99999999999999988889999999999999998765433444556666666654556678999999999999999987
Q ss_pred CCCCccEEEecCCCCHHHHHHHHHHhCCCCC
Q 023515 247 PSANGRYCLVERVSHYSEIVNIIRELYPAFQ 277 (281)
Q Consensus 247 ~~~~g~~~~~~~~~t~~e~~~~i~~~~~~~~ 277 (281)
+...|.||++++.+|+.|+++.+.+.+|...
T Consensus 244 ~~~~~~~ni~~~~~s~~ei~~~i~~~~~~~~ 274 (325)
T PLN02989 244 PSANGRYIIDGPVVTIKDIENVLREFFPDLC 274 (325)
T ss_pred cccCceEEEecCCCCHHHHHHHHHHHCCCCC
Confidence 7656799998889999999999999998543
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=293.62 Aligned_cols=266 Identities=52% Similarity=0.886 Sum_probs=205.8
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
.++|+||||||+||||++++++|+++|++|++++|+.++.... .+........+++++.+|++|.+.+.++++++|+||
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi 86 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNT-HLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF 86 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHH-HHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence 4678999999999999999999999999999999976532110 011111111358899999999999999999999999
Q ss_pred EecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCch
Q 023515 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (281)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 166 (281)
|+|++.. ..+...+++|+.++.+++++|++. ++++|||+||..++|+.... .+...++|+++.....+..+.++
T Consensus 87 h~A~~~~----~~~~~~~~~nv~gt~~ll~aa~~~-~v~r~V~~SS~~avyg~~~~-~~~~~~~E~~~~~~~~~~~p~~~ 160 (342)
T PLN02214 87 HTASPVT----DDPEQMVEPAVNGAKFVINAAAEA-KVKRVVITSSIGAVYMDPNR-DPEAVVDESCWSDLDFCKNTKNW 160 (342)
T ss_pred EecCCCC----CCHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEeccceeeeccCCC-CCCcccCcccCCChhhccccccH
Confidence 9999753 234588999999999999999998 78899999998666653221 12235778765332223334567
Q ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC-CCCCCCCccceeHHHHHHHHHHhhc
Q 023515 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA-QTYPNVTFGWVNVKDVANAHIQAFE 245 (281)
Q Consensus 167 Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~D~a~~i~~~~~ 245 (281)
|+.+|.++|.+++.+++++|++++++||++||||...+........+.....+. ..++++.++|||++|+|++++.+++
T Consensus 161 Y~~sK~~aE~~~~~~~~~~g~~~v~lRp~~vyGp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~V~Dva~a~~~al~ 240 (342)
T PLN02214 161 YCYGKMVAEQAAWETAKEKGVDLVVLNPVLVLGPPLQPTINASLYHVLKYLTGSAKTYANLTQAYVDVRDVALAHVLVYE 240 (342)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCcccCCCCCcCeeEHHHHHHHHHHHHh
Confidence 999999999999999888899999999999999986543222222233344454 4456778999999999999999999
Q ss_pred CCCCCccEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 023515 246 VPSANGRYCLVERVSHYSEIVNIIRELYPAFQLP 279 (281)
Q Consensus 246 ~~~~~g~~~~~~~~~t~~e~~~~i~~~~~~~~~p 279 (281)
++..+|.||+++...++.|+++.+.+.+|..++|
T Consensus 241 ~~~~~g~yn~~~~~~~~~el~~~i~~~~~~~~~~ 274 (342)
T PLN02214 241 APSASGRYLLAESARHRGEVVEILAKLFPEYPLP 274 (342)
T ss_pred CcccCCcEEEecCCCCHHHHHHHHHHHCCCCCCC
Confidence 8766679999877899999999999999865554
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=288.63 Aligned_cols=256 Identities=18% Similarity=0.163 Sum_probs=196.1
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcch-hhhhhhcc--CCCCcEEEEEcCCCCcCcHHHHhcCCc
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKK-TRHLLALD--GASERLQLFKANLLEEGSFDSIVDGCD 83 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~d 83 (281)
+++|+|||||||||||++|+++|+++|++|++++|....... +....... ....++.++.+|++|.+.+.++++++|
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~d 92 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNVD 92 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCCC
Confidence 467899999999999999999999999999999986543211 11111000 001358899999999999999999999
Q ss_pred EeEEecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhcc
Q 023515 84 GVCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQ 162 (281)
Q Consensus 84 ~Vih~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 162 (281)
+|||+|+..... ........+++|+.|+.+++++|++. ++++|||+||+.+|+ .. ...+..|+++..|
T Consensus 93 ~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~-~~~~~v~~SS~~vyg-~~----~~~~~~e~~~~~p----- 161 (348)
T PRK15181 93 YVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDA-HVSSFTYAASSSTYG-DH----PDLPKIEERIGRP----- 161 (348)
T ss_pred EEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCeEEEeechHhhC-CC----CCCCCCCCCCCCC-----
Confidence 999999864321 11223477999999999999999998 889999999987664 21 1233456555443
Q ss_pred CCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCC---CccHHHHHHHHhCCC--CC--CCCCccceeHHH
Q 023515 163 SELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL---NTSAAAVLSLIKGAQ--TY--PNVTFGWVNVKD 235 (281)
Q Consensus 163 ~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~---~~~~~~~~~~~~~~~--~~--~~~~~~~i~~~D 235 (281)
.++|+.+|.++|.+++.+.++++++++++||+++|||.+.+.. .....++.++..+.+ .+ |.+.++|+|++|
T Consensus 162 -~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~g~~~rd~i~v~D 240 (348)
T PRK15181 162 -LSPYAVTKYVNELYADVFARSYEFNAIGLRYFNVFGRRQNPNGAYSAVIPRWILSLLKDEPIYINGDGSTSRDFCYIEN 240 (348)
T ss_pred -CChhhHHHHHHHHHHHHHHHHhCCCEEEEEecceeCcCCCCCCccccCHHHHHHHHHcCCCcEEeCCCCceEeeEEHHH
Confidence 3569999999999999998888999999999999999865432 123455666666653 23 577899999999
Q ss_pred HHHHHHHhhcCCC---CCccEEEe-cCCCCHHHHHHHHHHhCC
Q 023515 236 VANAHIQAFEVPS---ANGRYCLV-ERVSHYSEIVNIIRELYP 274 (281)
Q Consensus 236 ~a~~i~~~~~~~~---~~g~~~~~-~~~~t~~e~~~~i~~~~~ 274 (281)
+|++++.++..+. .+++||++ ++.+|+.|+++.+.+.++
T Consensus 241 ~a~a~~~~~~~~~~~~~~~~yni~~g~~~s~~e~~~~i~~~~~ 283 (348)
T PRK15181 241 VIQANLLSATTNDLASKNKVYNVAVGDRTSLNELYYLIRDGLN 283 (348)
T ss_pred HHHHHHHHHhcccccCCCCEEEecCCCcEeHHHHHHHHHHHhC
Confidence 9999998776432 34699997 578999999999998876
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=279.86 Aligned_cols=276 Identities=40% Similarity=0.659 Sum_probs=200.4
Q ss_pred CcchhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc
Q 023515 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (281)
Q Consensus 1 ~~~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 80 (281)
|..+.-+++++||||||+||||++|+++|+++|++|++++|+............... ..+++++.+|++|.+.+..+++
T Consensus 1 ~~~~~~~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~ 79 (338)
T PLN00198 1 MATLTPTGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAHLRALQE-LGDLKIFGADLTDEESFEAPIA 79 (338)
T ss_pred CCcccCCCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHhcCC-CCceEEEEcCCCChHHHHHHHh
Confidence 334444568899999999999999999999999999999988654322211111111 1358899999999999999999
Q ss_pred CCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChh--
Q 023515 81 GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPE-- 158 (281)
Q Consensus 81 ~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~-- 158 (281)
++|+|||+|+.......++...++++|+.++.+++++|.+..++++||++||..+++....+ ....+++|+.+....
T Consensus 80 ~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~-~~~~~~~E~~~~~~~~~ 158 (338)
T PLN00198 80 GCDLVFHVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLS-GTGLVMNEKNWTDVEFL 158 (338)
T ss_pred cCCEEEEeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCC-CCCceeccccCCchhhh
Confidence 99999999997543333444457799999999999999886457899999998777532211 112344554321100
Q ss_pred -hhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCC--CCC-------CCCc
Q 023515 159 -VCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--TYP-------NVTF 228 (281)
Q Consensus 159 -~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~--~~~-------~~~~ 228 (281)
.+..+.++|+.||.++|.+++.++++++++++++||++||||.+..........+.....+.+ ..+ .+.+
T Consensus 159 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 238 (338)
T PLN00198 159 TSEKPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPSLTSDIPSSLSLAMSLITGNEFLINGLKGMQMLSGSI 238 (338)
T ss_pred hhcCCccchhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCCccCCCCCcHHHHHHHHcCCccccccccccccccCCc
Confidence 011234669999999999999999889999999999999999865433222223334444432 112 2347
Q ss_pred cceeHHHHHHHHHHhhcCCCCCccEEEecCCCCHHHHHHHHHHhCCCCCC
Q 023515 229 GWVNVKDVANAHIQAFEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQL 278 (281)
Q Consensus 229 ~~i~~~D~a~~i~~~~~~~~~~g~~~~~~~~~t~~e~~~~i~~~~~~~~~ 278 (281)
+|+|++|+|++++.+++.+...|.|++++...++.|+++.+.+.++..++
T Consensus 239 ~~i~V~D~a~a~~~~~~~~~~~~~~~~~~~~~s~~el~~~i~~~~~~~~~ 288 (338)
T PLN00198 239 SITHVEDVCRAHIFLAEKESASGRYICCAANTSVPELAKFLIKRYPQYQV 288 (338)
T ss_pred ceeEHHHHHHHHHHHhhCcCcCCcEEEecCCCCHHHHHHHHHHHCCCCCC
Confidence 99999999999999998866567887778889999999999998875443
|
|
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=266.92 Aligned_cols=248 Identities=22% Similarity=0.296 Sum_probs=197.7
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCC-CCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--CCcEeE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDP-NDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVC 86 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~Vi 86 (281)
|+||||||+||||+|.|.+|++.|++|++++.-. ...+.+... .+.|+++|+.|.+.++++++ ++|.||
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~~--------~~~f~~gDi~D~~~L~~vf~~~~idaVi 72 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKL--------QFKFYEGDLLDRALLTAVFEENKIDAVV 72 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhhc--------cCceEEeccccHHHHHHHHHhcCCCEEE
Confidence 5799999999999999999999999999999843 233332211 16899999999999999997 799999
Q ss_pred Eeccc--CCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCC
Q 023515 87 HTASP--FYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSE 164 (281)
Q Consensus 87 h~a~~--~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 164 (281)
|.||. +..+..++. .+++.|+.||.+|+++++++ ++++|||.||+.+|+ . +...+++|+.+..|.
T Consensus 73 HFAa~~~VgESv~~Pl-~Yy~NNv~gTl~Ll~am~~~-gv~~~vFSStAavYG-~----p~~~PI~E~~~~~p~------ 139 (329)
T COG1087 73 HFAASISVGESVQNPL-KYYDNNVVGTLNLIEAMLQT-GVKKFIFSSTAAVYG-E----PTTSPISETSPLAPI------ 139 (329)
T ss_pred ECccccccchhhhCHH-HHHhhchHhHHHHHHHHHHh-CCCEEEEecchhhcC-C----CCCcccCCCCCCCCC------
Confidence 99996 555556665 89999999999999999999 899999999976654 3 344789999998865
Q ss_pred chhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCC-------CccHHHHHHHHhCC-C---CC--------CC
Q 023515 165 LWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL-------NTSAAAVLSLIKGA-Q---TY--------PN 225 (281)
Q Consensus 165 ~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~-------~~~~~~~~~~~~~~-~---~~--------~~ 225 (281)
++||.||...|++++.+++.++++++++|.+++-|-...... .-....+.+..-|+ + ++ |.
T Consensus 140 NPYG~sKlm~E~iL~d~~~a~~~~~v~LRYFN~aGA~~~G~iGe~~~~~thLip~~~q~A~G~r~~l~ifG~DY~T~DGT 219 (329)
T COG1087 140 NPYGRSKLMSEEILRDAAKANPFKVVILRYFNVAGACPDGTLGQRYPGATLLIPVAAEAALGKRDKLFIFGDDYDTKDGT 219 (329)
T ss_pred CcchhHHHHHHHHHHHHHHhCCCcEEEEEecccccCCCCCccCCCCCCcchHHHHHHHHHhcCCceeEEeCCCCCCCCCC
Confidence 779999999999999999999999999999999885322111 11223333333333 1 22 46
Q ss_pred CCccceeHHHHHHHHHHhhcCCCCCc---cEEEe-cCCCCHHHHHHHHHHhCCCCCCC
Q 023515 226 VTFGWVNVKDVANAHIQAFEVPSANG---RYCLV-ERVSHYSEIVNIIRELYPAFQLP 279 (281)
Q Consensus 226 ~~~~~i~~~D~a~~i~~~~~~~~~~g---~~~~~-~~~~t~~e~~~~i~~~~~~~~~p 279 (281)
..|||||+.|+|++.+.+++.-..+| +||++ |...|..|+++.+.+..| .++|
T Consensus 220 ~iRDYIHV~DLA~aH~~Al~~L~~~g~~~~~NLG~G~G~SV~evi~a~~~vtg-~~ip 276 (329)
T COG1087 220 CIRDYIHVDDLADAHVLALKYLKEGGSNNIFNLGSGNGFSVLEVIEAAKKVTG-RDIP 276 (329)
T ss_pred eeeeeeehhHHHHHHHHHHHHHHhCCceeEEEccCCCceeHHHHHHHHHHHhC-CcCc
Confidence 77999999999999999987544333 79987 789999999999999988 3444
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=280.79 Aligned_cols=266 Identities=43% Similarity=0.768 Sum_probs=196.3
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEe
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~ 88 (281)
.|+|||||||||||++++++|+++|++|++++|+......+..+........+++++.+|++|.+.+.++++++|+|||+
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~ViH~ 84 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVFHV 84 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEEEe
Confidence 67899999999999999999999999999999986554443332211111135889999999999999999999999999
Q ss_pred cccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChh---hhccCCc
Q 023515 89 ASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPE---VCKQSEL 165 (281)
Q Consensus 89 a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~---~~~~~~~ 165 (281)
|+.......++....+++|+.++.+++++|.+.+.+++|||+||.+++++... ....++|+.+.... .+..+.+
T Consensus 85 A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~---~~~~~~E~~~~~~~~~~~~~~~~~ 161 (351)
T PLN02650 85 ATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEH---QKPVYDEDCWSDLDFCRRKKMTGW 161 (351)
T ss_pred CCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCC---CCCccCcccCCchhhhhccccccc
Confidence 98754322333347889999999999999999733789999999877653211 11124555332111 1111235
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHH--HHhCC-CCC-CCCCccceeHHHHHHHHH
Q 023515 166 WYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLS--LIKGA-QTY-PNVTFGWVNVKDVANAHI 241 (281)
Q Consensus 166 ~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~--~~~~~-~~~-~~~~~~~i~~~D~a~~i~ 241 (281)
+|+.||.++|.+++.+++++|++++++||+++|||.+..... ...+.. ...+. ..+ ..+.++|+|++|+|++++
T Consensus 162 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~r~~v~V~Dva~a~~ 239 (351)
T PLN02650 162 MYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPFISTSMP--PSLITALSLITGNEAHYSIIKQGQFVHLDDLCNAHI 239 (351)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCCCCCCCC--ccHHHHHHHhcCCccccCcCCCcceeeHHHHHHHHH
Confidence 799999999999999998899999999999999998654221 112221 12232 222 234589999999999999
Q ss_pred HhhcCCCCCccEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 023515 242 QAFEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLP 279 (281)
Q Consensus 242 ~~~~~~~~~g~~~~~~~~~t~~e~~~~i~~~~~~~~~p 279 (281)
.+++++...|.|++++..+++.|+++.+.+.++...+|
T Consensus 240 ~~l~~~~~~~~~i~~~~~~s~~el~~~i~~~~~~~~~~ 277 (351)
T PLN02650 240 FLFEHPAAEGRYICSSHDATIHDLAKMLREKYPEYNIP 277 (351)
T ss_pred HHhcCcCcCceEEecCCCcCHHHHHHHHHHhCcccCCC
Confidence 99988766678877788899999999999988755444
|
|
| >COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=258.27 Aligned_cols=254 Identities=19% Similarity=0.193 Sum_probs=205.1
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--CCcEe
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGV 85 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~V 85 (281)
|++|||||+||||++++++++++. .+|+.++.=.- +..++.+.. ....++..|+++|+.|.+.+.++++ ++|+|
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTY-Agn~~~l~~-~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~V 78 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTY-AGNLENLAD-VEDSPRYRFVQGDICDRELVDRLFKEYQPDAV 78 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccc-cCCHHHHHh-hhcCCCceEEeccccCHHHHHHHHHhcCCCeE
Confidence 579999999999999999999885 45777776321 222222211 1123589999999999999999998 69999
Q ss_pred EEeccc--CCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccC
Q 023515 86 CHTASP--FYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQS 163 (281)
Q Consensus 86 ih~a~~--~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 163 (281)
+|.||. +..+...+ +.++++|+.||.+||++++++-..-+|+++||--+|+ +-. .....++|.++..|+
T Consensus 79 vhfAAESHVDRSI~~P-~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG-~l~--~~~~~FtE~tp~~Ps----- 149 (340)
T COG1088 79 VHFAAESHVDRSIDGP-APFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYG-DLG--LDDDAFTETTPYNPS----- 149 (340)
T ss_pred EEechhccccccccCh-hhhhhcchHHHHHHHHHHHHhcccceEEEeccccccc-ccc--CCCCCcccCCCCCCC-----
Confidence 999997 33333333 5999999999999999999982234899999986664 321 122368899999876
Q ss_pred CchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC--CCC--CCCCccceeHHHHHHH
Q 023515 164 ELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA--QTY--PNVTFGWVNVKDVANA 239 (281)
Q Consensus 164 ~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~i~~~D~a~~ 239 (281)
+||++||++++.++++|.+.+|+++++.|+++-|||.+.+- ..++..+.+++.|. |.+ |.+.|||+|++|-+++
T Consensus 150 -SPYSASKAasD~lVray~~TYglp~~ItrcSNNYGPyqfpE-KlIP~~I~nal~g~~lpvYGdG~~iRDWl~VeDh~~a 227 (340)
T COG1088 150 -SPYSASKAASDLLVRAYVRTYGLPATITRCSNNYGPYQFPE-KLIPLMIINALLGKPLPVYGDGLQIRDWLYVEDHCRA 227 (340)
T ss_pred -CCcchhhhhHHHHHHHHHHHcCCceEEecCCCCcCCCcCch-hhhHHHHHHHHcCCCCceecCCcceeeeEEeHhHHHH
Confidence 78999999999999999999999999999999999987653 34667777788887 555 5789999999999999
Q ss_pred HHHhhcCCCCCccEEEec-CCCCHHHHHHHHHHhCCCC
Q 023515 240 HIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAF 276 (281)
Q Consensus 240 i~~~~~~~~~~g~~~~~~-~~~t~~e~~~~i~~~~~~~ 276 (281)
+..++.++..+.+||+++ +..+..|+++.|++.+++.
T Consensus 228 i~~Vl~kg~~GE~YNIgg~~E~~Nlevv~~i~~~l~~~ 265 (340)
T COG1088 228 IDLVLTKGKIGETYNIGGGNERTNLEVVKTICELLGKD 265 (340)
T ss_pred HHHHHhcCcCCceEEeCCCccchHHHHHHHHHHHhCcc
Confidence 999999999877999985 7889999999999999863
|
|
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=268.83 Aligned_cols=264 Identities=35% Similarity=0.581 Sum_probs=199.4
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 87 (281)
++++|+|||||||||++++++|+++||+|+++.|+..+......+........+++++++|++|.+.+.+++.++|.|+|
T Consensus 5 ~~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l~~~d~v~~ 84 (297)
T PLN02583 5 SSKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSILDALKGCSGLFC 84 (297)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHHHHHHcCCCEEEE
Confidence 47889999999999999999999999999999986433221111111111124688999999999999999999999999
Q ss_pred ecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchh
Q 023515 88 TASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWY 167 (281)
Q Consensus 88 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y 167 (281)
+++....... .++..+++|+.|+.+++++|.+.+++++||++||..++...+.......+++|+++..+..+.....+|
T Consensus 85 ~~~~~~~~~~-~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~SS~~a~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y 163 (297)
T PLN02583 85 CFDPPSDYPS-YDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTSSLTAVIWRDDNISTQKDVDERSWSDQNFCRKFKLWH 163 (297)
T ss_pred eCccCCcccc-cHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecchHheecccccCCCCCCCCcccCCCHHHHhhcccHH
Confidence 8865443222 345889999999999999999864578999999987764221111233457787765444333334479
Q ss_pred hhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC-CCCCCCCccceeHHHHHHHHHHhhcC
Q 023515 168 PLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA-QTYPNVTFGWVNVKDVANAHIQAFEV 246 (281)
Q Consensus 168 ~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~D~a~~i~~~~~~ 246 (281)
+.||..+|++++.++++.|++++++||+.||||...+.. . ...+. +..+...+.|||++|+|++++.+++.
T Consensus 164 ~~sK~~aE~~~~~~~~~~gi~~v~lrp~~v~Gp~~~~~~----~----~~~~~~~~~~~~~~~~v~V~Dva~a~~~al~~ 235 (297)
T PLN02583 164 ALAKTLSEKTAWALAMDRGVNMVSINAGLLMGPSLTQHN----P----YLKGAAQMYENGVLVTVDVNFLVDAHIRAFED 235 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEcCCcccCCCCCCch----h----hhcCCcccCcccCcceEEHHHHHHHHHHHhcC
Confidence 999999999999998888999999999999999754321 1 12222 23344567899999999999999998
Q ss_pred CCCCccEEEecCCC-CHHHHHHHHHHhCCCCCCCC
Q 023515 247 PSANGRYCLVERVS-HYSEIVNIIRELYPAFQLPE 280 (281)
Q Consensus 247 ~~~~g~~~~~~~~~-t~~e~~~~i~~~~~~~~~p~ 280 (281)
+...|.|+++++.. .+.++++.+.+.+|..++|.
T Consensus 236 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 270 (297)
T PLN02583 236 VSSYGRYLCFNHIVNTEEDAVKLAQMLSPLIPSPP 270 (297)
T ss_pred cccCCcEEEecCCCccHHHHHHHHHHhCCCCCCCC
Confidence 87778999997755 46889999999999887763
|
|
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=265.35 Aligned_cols=249 Identities=29% Similarity=0.365 Sum_probs=187.9
Q ss_pred EEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEecc
Q 023515 13 CVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTAS 90 (281)
Q Consensus 13 lItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a~ 90 (281)
|||||+||||++|+++|+++| ++|+++++.+..... ..... ....+++++|++|++++.++++++|+|||+|+
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~-~~~~~----~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa 75 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFL-KDLQK----SGVKEYIQGDITDPESLEEALEGVDVVFHTAA 75 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccc-hhhhc----ccceeEEEeccccHHHHHHHhcCCceEEEeCc
Confidence 699999999999999999999 799999987654321 11110 12334999999999999999999999999999
Q ss_pred cCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchhhhh
Q 023515 91 PFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLS 170 (281)
Q Consensus 91 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~s 170 (281)
+.........+.++++|+.||++++++|++. ++++|||+||.+++..+. ...+-...+|+++..+. ..++|+.|
T Consensus 76 ~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~-~VkrlVytSS~~vv~~~~-~~~~~~~~dE~~~~~~~----~~~~Y~~S 149 (280)
T PF01073_consen 76 PVPPWGDYPPEEYYKVNVDGTRNVLEAARKA-GVKRLVYTSSISVVFDNY-KGDPIINGDEDTPYPSS----PLDPYAES 149 (280)
T ss_pred cccccCcccHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEcCcceeEecc-CCCCcccCCcCCccccc----ccCchHHH
Confidence 8665444556689999999999999999998 999999999999886321 11122223566554332 44679999
Q ss_pred HHHHHHHHHHHHH---hc--CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC--CCC--CCCCccceeHHHHHHHHH
Q 023515 171 KTLAEDAAWKFAK---EK--SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA--QTY--PNVTFGWVNVKDVANAHI 241 (281)
Q Consensus 171 K~~~e~~~~~~~~---~~--g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~i~~~D~a~~i~ 241 (281)
|..+|+++.+... +. .+..++|||+.||||+...... ........+. ... ++...+|+|++|+|++++
T Consensus 150 K~~AE~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~d~~~~~---~~~~~~~~g~~~~~~g~~~~~~~~vyV~NvA~ahv 226 (280)
T PF01073_consen 150 KALAEKAVLEANGSELKNGGRLRTCALRPAGIYGPGDQRLVP---RLVKMVRSGLFLFQIGDGNNLFDFVYVENVAHAHV 226 (280)
T ss_pred HHHHHHHHHhhcccccccccceeEEEEeccEEeCcccccccc---hhhHHHHhcccceeecCCCceECcEeHHHHHHHHH
Confidence 9999999988765 22 4899999999999998654322 2222233332 122 456789999999999999
Q ss_pred HhhcC---C----CCCc-cEEEec-CCCC-HHHHHHHHHHhCCC
Q 023515 242 QAFEV---P----SANG-RYCLVE-RVSH-YSEIVNIIRELYPA 275 (281)
Q Consensus 242 ~~~~~---~----~~~g-~~~~~~-~~~t-~~e~~~~i~~~~~~ 275 (281)
.+.+. + ...| .|++++ +++. +.|+.+.+.+.+|.
T Consensus 227 lA~~~L~~~~~~~~~~G~~y~itd~~p~~~~~~f~~~~~~~~G~ 270 (280)
T PF01073_consen 227 LAAQALLEPGKPERVAGQAYFITDGEPVPSFWDFMRPLWEALGY 270 (280)
T ss_pred HHHHHhccccccccCCCcEEEEECCCccCcHHHHHHHHHHHCCC
Confidence 88653 2 2344 888885 7888 99999999999885
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=272.21 Aligned_cols=253 Identities=17% Similarity=0.249 Sum_probs=189.8
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHC-CCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCC-CcCcHHHHhcCCcEeE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSR-GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLL-EEGSFDSIVDGCDGVC 86 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~d~Vi 86 (281)
||+|||||||||||++|+++|+++ |++|++++|+..+... +.. ..+++++.+|++ +.+.+.++++++|+||
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~---~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~d~Vi 73 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGD---LVN----HPRMHFFEGDITINKEWIEYHVKKCDVIL 73 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHH---hcc----CCCeEEEeCCCCCCHHHHHHHHcCCCEEE
Confidence 458999999999999999999987 6999999986532211 110 135899999998 6677888888999999
Q ss_pred EecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhh-ccCC
Q 023515 87 HTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVC-KQSE 164 (281)
Q Consensus 87 h~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~-~~~~ 164 (281)
|+|+..... .....+..+++|+.++.+++++|++. + ++|||+||..+|+ .. ...+++|+.++....+ ..+.
T Consensus 74 H~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~-~-~~~v~~SS~~vyg-~~----~~~~~~ee~~~~~~~~~~~p~ 146 (347)
T PRK11908 74 PLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKY-G-KHLVFPSTSEVYG-MC----PDEEFDPEASPLVYGPINKPR 146 (347)
T ss_pred ECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhc-C-CeEEEEecceeec-cC----CCcCcCccccccccCcCCCcc
Confidence 999864321 22333477899999999999999997 6 6999999987654 22 1223455543211101 1234
Q ss_pred chhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCC-------CCccHHHHHHHHhCCC--C--CCCCCccceeH
Q 023515 165 LWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPT-------LNTSAAAVLSLIKGAQ--T--YPNVTFGWVNV 233 (281)
Q Consensus 165 ~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~-------~~~~~~~~~~~~~~~~--~--~~~~~~~~i~~ 233 (281)
+.|+.+|.++|++++.++++++++++++||+++|||...+. .......+.++..+.+ . .|++.++|+|+
T Consensus 147 ~~Y~~sK~~~e~~~~~~~~~~~~~~~ilR~~~v~Gp~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~r~~i~v 226 (347)
T PRK11908 147 WIYACSKQLMDRVIWAYGMEEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGEPISLVDGGSQKRAFTDI 226 (347)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCeEEEeeeeeeCCCccCCCccccCCcchHHHHHHHHhCCCceEEecCCceeeccccH
Confidence 56999999999999999888899999999999999975431 1123455556666653 2 25788999999
Q ss_pred HHHHHHHHHhhcCCC---CCccEEEec--CCCCHHHHHHHHHHhCCC
Q 023515 234 KDVANAHIQAFEVPS---ANGRYCLVE--RVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 234 ~D~a~~i~~~~~~~~---~~g~~~~~~--~~~t~~e~~~~i~~~~~~ 275 (281)
+|+|++++.+++++. .++.||+++ ..+|++|+++.|.+.++.
T Consensus 227 ~D~a~a~~~~~~~~~~~~~g~~yni~~~~~~~s~~e~~~~i~~~~~~ 273 (347)
T PRK11908 227 DDGIDALMKIIENKDGVASGKIYNIGNPKNNHSVRELANKMLELAAE 273 (347)
T ss_pred HHHHHHHHHHHhCccccCCCCeEEeCCCCCCcCHHHHHHHHHHHhcC
Confidence 999999999998753 245899975 379999999999988764
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=268.11 Aligned_cols=265 Identities=43% Similarity=0.676 Sum_probs=191.1
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 87 (281)
.+|+||||||+||||++++++|+++|++|++++|+..+...+..... ...+++++.+|+++.+.+.++++++|+|||
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 85 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWK---EGDRLRLFRADLQEEGSFDEAVKGCDGVFH 85 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhc---cCCeEEEEECCCCCHHHHHHHHcCCCEEEE
Confidence 47899999999999999999999999999999987654333221111 124688999999999999999999999999
Q ss_pred ecccCCCCC---CCccc-----hhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChh-
Q 023515 88 TASPFYHDA---KDPQV-----ELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPE- 158 (281)
Q Consensus 88 ~a~~~~~~~---~~~~~-----~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~- 158 (281)
+|+...... ....+ ..++.|+.++.+++++|.+.+++++||++||..+|+..+.......+++|+.+...+
T Consensus 86 ~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~~p~~~ 165 (353)
T PLN02896 86 VAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQTPIDH 165 (353)
T ss_pred CCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccCCcHHH
Confidence 999743221 11222 344556799999999998874478999999987765322111111345665321111
Q ss_pred --hhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCC-CC----C----CCC
Q 023515 159 --VCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ-TY----P----NVT 227 (281)
Q Consensus 159 --~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~-~~----~----~~~ 227 (281)
.+..+.++|+.||.++|++++.++++++++++++||+++|||.+.+........+.....|.. .. + ...
T Consensus 166 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 245 (353)
T PLN02896 166 VWNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPFLTPSVPSSIQVLLSPITGDSKLFSILSAVNSRMGS 245 (353)
T ss_pred hhccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCCcCCCCCchHHHHHHHhcCCccccccccccccccCc
Confidence 011233579999999999999999889999999999999999865433322222222223321 11 1 124
Q ss_pred ccceeHHHHHHHHHHhhcCCCCCccEEEecCCCCHHHHHHHHHHhCCC
Q 023515 228 FGWVNVKDVANAHIQAFEVPSANGRYCLVERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~~~g~~~~~~~~~t~~e~~~~i~~~~~~ 275 (281)
++|||++|+|++++.+++.+...+.|++++..+++.|+++.+.+.++.
T Consensus 246 ~dfi~v~Dva~a~~~~l~~~~~~~~~~~~~~~~s~~el~~~i~~~~~~ 293 (353)
T PLN02896 246 IALVHIEDICDAHIFLMEQTKAEGRYICCVDSYDMSELINHLSKEYPC 293 (353)
T ss_pred eeEEeHHHHHHHHHHHHhCCCcCccEEecCCCCCHHHHHHHHHHhCCC
Confidence 699999999999999998765566888778899999999999998874
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=272.67 Aligned_cols=259 Identities=17% Similarity=0.208 Sum_probs=188.3
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHC-CCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSR-GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+.|+|||||||||||++|+++|+++ |++|++++|+..+...+...... ....+++++.+|++|.+.+.++++++|+||
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~-~~~~~~~~~~~Dl~d~~~l~~~~~~~d~Vi 91 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTV-PWSGRIQFHRINIKHDSRLEGLIKMADLTI 91 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccc-cCCCCeEEEEcCCCChHHHHHHhhcCCEEE
Confidence 4678999999999999999999998 59999999876543322111000 011368999999999999999999999999
Q ss_pred EecccCCC--CCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCCh-------
Q 023515 87 HTASPFYH--DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDP------- 157 (281)
Q Consensus 87 h~a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~------- 157 (281)
|+|+.... ...++ .+.+..|+.++.+++++|++. + ++|||+||..+|+ ... ...++|+.+..+
T Consensus 92 HlAa~~~~~~~~~~~-~~~~~~n~~gt~~ll~aa~~~-~-~r~v~~SS~~vYg-~~~----~~~~~e~~p~~~~~~~~~~ 163 (386)
T PLN02427 92 NLAAICTPADYNTRP-LDTIYSNFIDALPVVKYCSEN-N-KRLIHFSTCEVYG-KTI----GSFLPKDHPLRQDPAFYVL 163 (386)
T ss_pred EcccccChhhhhhCh-HHHHHHHHHHHHHHHHHHHhc-C-CEEEEEeeeeeeC-CCc----CCCCCcccccccccccccc
Confidence 99986432 11222 356678999999999999987 5 7999999987654 211 111222222111
Q ss_pred --------h-hhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCC---------C-ccHHHHHHHHh
Q 023515 158 --------E-VCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL---------N-TSAAAVLSLIK 218 (281)
Q Consensus 158 --------~-~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~---------~-~~~~~~~~~~~ 218 (281)
. +...+.+.|+.+|.++|++++.+++.++++++++||++||||.+.... . .+..++..+..
T Consensus 164 ~e~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 243 (386)
T PLN02427 164 KEDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLR 243 (386)
T ss_pred cccccccccCCCCccccchHHHHHHHHHHHHHHHhhcCCceEEecccceeCCCCCccccccccccccchHHHHHHHHHhc
Confidence 0 001123569999999999999988888999999999999999753110 1 11223344555
Q ss_pred CCCC--C--CCCCccceeHHHHHHHHHHhhcCCC--CCccEEEec--CCCCHHHHHHHHHHhCCC
Q 023515 219 GAQT--Y--PNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVE--RVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 219 ~~~~--~--~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~--~~~t~~e~~~~i~~~~~~ 275 (281)
+.+. + +.+.++|+|++|+|++++.+++++. .+++||+++ +.+++.|+++.+.+.+|.
T Consensus 244 ~~~~~~~g~g~~~r~~i~V~Dva~ai~~al~~~~~~~g~~yni~~~~~~~s~~el~~~i~~~~g~ 308 (386)
T PLN02427 244 REPLKLVDGGQSQRTFVYIKDAIEAVLLMIENPARANGHIFNVGNPNNEVTVRQLAEMMTEVYAK 308 (386)
T ss_pred CCCeEEECCCCceECcEeHHHHHHHHHHHHhCcccccCceEEeCCCCCCccHHHHHHHHHHHhcc
Confidence 5532 2 4677899999999999999998764 245899985 489999999999998874
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=266.50 Aligned_cols=267 Identities=30% Similarity=0.492 Sum_probs=196.1
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccC---CCCcEEEEEcCCCCcCcHHHHhcCC
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDG---ASERLQLFKANLLEEGSFDSIVDGC 82 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~ 82 (281)
.+++|+||||||+||||++++++|+++|++|+++.|+.++...+..+..... ...++.++++|++|.+.+.++++++
T Consensus 50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~~~ 129 (367)
T PLN02686 50 DAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAFDGC 129 (367)
T ss_pred CCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHHHHhc
Confidence 4568999999999999999999999999999998887644333322111000 0125789999999999999999999
Q ss_pred cEeEEecccCCCCCC-CccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccce-eeecCCCCCCCCeeeecCCCCChhhh
Q 023515 83 DGVCHTASPFYHDAK-DPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMA-AVLNTGKPRTPDVVVDETWFSDPEVC 160 (281)
Q Consensus 83 d~Vih~a~~~~~~~~-~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~-~~~~~~~~~~~~~~~~e~~~~~~~~~ 160 (281)
|.|||+|+....... .......++|+.++.+++++|.+..++++|||+||.. ..++...+......++|+.+.....+
T Consensus 130 d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~r~V~~SS~~~~vyg~~~~~~~~~~i~E~~~~~~~~~ 209 (367)
T PLN02686 130 AGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVRKCVFTSSLLACVWRQNYPHDLPPVIDEESWSDESFC 209 (367)
T ss_pred cEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCccEEEEeccHHHhcccccCCCCCCcccCCCCCCChhhc
Confidence 999999987543221 1223567889999999999999753689999999974 23332111111134666654433333
Q ss_pred ccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC-CCCCCCCccceeHHHHHHH
Q 023515 161 KQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA-QTYPNVTFGWVNVKDVANA 239 (281)
Q Consensus 161 ~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~D~a~~ 239 (281)
..+.++|+.+|.++|.+++.+++++|++++++||++||||++..... ..+.....+. +.+++..++|+|++|+|++
T Consensus 210 ~~p~~~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~vyGp~~~~~~~---~~~~~~~~g~~~~~g~g~~~~v~V~Dva~A 286 (367)
T PLN02686 210 RDNKLWYALGKLKAEKAAWRAARGKGLKLATICPALVTGPGFFRRNS---TATIAYLKGAQEMLADGLLATADVERLAEA 286 (367)
T ss_pred ccccchHHHHHHHHHHHHHHHHHhcCceEEEEcCCceECCCCCCCCC---hhHHHHhcCCCccCCCCCcCeEEHHHHHHH
Confidence 33456799999999999999988889999999999999997543211 1122333443 4556666789999999999
Q ss_pred HHHhhcCC---CCCccEEEecCCCCHHHHHHHHHHhCCC
Q 023515 240 HIQAFEVP---SANGRYCLVERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 240 i~~~~~~~---~~~g~~~~~~~~~t~~e~~~~i~~~~~~ 275 (281)
++.+++.. ..++.|++++..+++.|+++.+.+.+|.
T Consensus 287 ~~~al~~~~~~~~~~~yi~~g~~~s~~e~~~~i~~~~g~ 325 (367)
T PLN02686 287 HVCVYEAMGNKTAFGRYICFDHVVSREDEAEELARQIGL 325 (367)
T ss_pred HHHHHhccCCCCCCCcEEEeCCCccHHHHHHHHHHHcCC
Confidence 99999852 3345887778999999999999999873
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=275.64 Aligned_cols=264 Identities=18% Similarity=0.186 Sum_probs=188.5
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCc-------chh-------hhhhhc-cCCCCcEEEEEcCCC
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP-------KKT-------RHLLAL-DGASERLQLFKANLL 70 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-------~~~-------~~~~~~-~~~~~~~~~~~~D~~ 70 (281)
..++|+|||||||||||++|+++|+++|++|++++|..... ..+ ..+... .....+++++.+|++
T Consensus 44 ~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~Dl~ 123 (442)
T PLN02572 44 SSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYVGDIC 123 (442)
T ss_pred cccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEEECCCC
Confidence 45789999999999999999999999999999987532110 000 000000 000135889999999
Q ss_pred CcCcHHHHhc--CCcEeEEecccCCCC--C--CCccchhhhhHHHHHHHHHHHhhhCCCcc-EEEEeccceeeecCCCCC
Q 023515 71 EEGSFDSIVD--GCDGVCHTASPFYHD--A--KDPQVELLDPAVKGTLNVLNSCAKFPSIK-RVVLTSSMAAVLNTGKPR 143 (281)
Q Consensus 71 ~~~~~~~~~~--~~d~Vih~a~~~~~~--~--~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~v~~SS~~~~~~~~~~~ 143 (281)
|.+.+.++++ ++|+|||+|+..... . ...++..+++|+.|+.+++++|++. +++ +||++||..+|+ .....
T Consensus 124 d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~-gv~~~~V~~SS~~vYG-~~~~~ 201 (442)
T PLN02572 124 DFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEF-APDCHLVKLGTMGEYG-TPNID 201 (442)
T ss_pred CHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHh-CCCccEEEEecceecC-CCCCC
Confidence 9999999887 589999999763321 1 1123356789999999999999998 664 899999987664 21110
Q ss_pred CCCeeee------cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCC-----------
Q 023515 144 TPDVVVD------ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL----------- 206 (281)
Q Consensus 144 ~~~~~~~------e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~----------- 206 (281)
.....++ |+++.. +..+.++|+.+|.++|.+++.+++.+|++++++||+++|||++....
T Consensus 202 ~~E~~i~~~~~~~e~~~~~---~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~~~~~~~~~li~~~~~ 278 (442)
T PLN02572 202 IEEGYITITHNGRTDTLPY---PKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETMMDEELINRLDY 278 (442)
T ss_pred CcccccccccccccccccC---CCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCCcccccccccccccCc
Confidence 0111111 222111 12234679999999999999999989999999999999999864311
Q ss_pred -----CccHHHHHHHHhCCC--CC--CCCCccceeHHHHHHHHHHhhcCCCCCc---cEEEecCCCCHHHHHHHHHHh--
Q 023515 207 -----NTSAAAVLSLIKGAQ--TY--PNVTFGWVNVKDVANAHIQAFEVPSANG---RYCLVERVSHYSEIVNIIREL-- 272 (281)
Q Consensus 207 -----~~~~~~~~~~~~~~~--~~--~~~~~~~i~~~D~a~~i~~~~~~~~~~g---~~~~~~~~~t~~e~~~~i~~~-- 272 (281)
.....++.++..|.+ .+ |++.++|+|++|+|++++.++++....| +||++++.+++.|+++.+.+.
T Consensus 279 ~~~~~~~i~~~~~~~~~g~~i~v~g~G~~~Rdfi~V~Dva~a~~~al~~~~~~g~~~i~Nigs~~~si~el~~~i~~~~~ 358 (442)
T PLN02572 279 DGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGFLDIRDTVRCIEIAIANPAKPGEFRVFNQFTEQFSVNELAKLVTKAGE 358 (442)
T ss_pred ccchhhHHHHHHHHHhcCCCceecCCCCEEECeEEHHHHHHHHHHHHhChhhcCceeEEEeCCCceeHHHHHHHHHHHHH
Confidence 112233445555653 33 5788999999999999999998653333 688877889999999999998
Q ss_pred -CC
Q 023515 273 -YP 274 (281)
Q Consensus 273 -~~ 274 (281)
+|
T Consensus 359 ~~g 361 (442)
T PLN02572 359 KLG 361 (442)
T ss_pred hhC
Confidence 65
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=267.38 Aligned_cols=256 Identities=19% Similarity=0.230 Sum_probs=192.0
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--CCcEeE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVC 86 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~Vi 86 (281)
||+|||||||||||+++++.|+++|++|+++.++..+........... ...++.++.+|++|.+.+.++++ ++|+||
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vi 79 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVA-QSERFAFEKVDICDRAELARVFTEHQPDCVM 79 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccccchhhhhhcc-cCCceEEEECCCcChHHHHHHHhhcCCCEEE
Confidence 468999999999999999999999987555433322211111111110 11357889999999999999888 489999
Q ss_pred EecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhC--------CCccEEEEeccceeeecCCCCCCCCeeeecCCCCCh
Q 023515 87 HTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKF--------PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDP 157 (281)
Q Consensus 87 h~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~--------~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~ 157 (281)
|+||..... ..+.++..+++|+.++.+++++|.+. .++++||++||..+|. .. .....+++|+.+..|
T Consensus 80 h~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg-~~--~~~~~~~~E~~~~~p 156 (355)
T PRK10217 80 HLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYG-DL--HSTDDFFTETTPYAP 156 (355)
T ss_pred ECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcC-CC--CCCCCCcCCCCCCCC
Confidence 999974432 12334689999999999999999863 1457999999986653 21 112334677766554
Q ss_pred hhhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCC--CC--CCCCccceeH
Q 023515 158 EVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--TY--PNVTFGWVNV 233 (281)
Q Consensus 158 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~i~~ 233 (281)
. +.|+.||.++|.+++.++++++++++++||+++|||...+. ......+.+...+.+ .+ +++.++|+|+
T Consensus 157 ~------s~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~-~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v 229 (355)
T PRK10217 157 S------SPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHFPE-KLIPLMILNALAGKPLPVYGNGQQIRDWLYV 229 (355)
T ss_pred C------ChhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCcc-cHHHHHHHHHhcCCCceEeCCCCeeeCcCcH
Confidence 3 56999999999999999888999999999999999986432 233445555555553 22 5789999999
Q ss_pred HHHHHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 234 KDVANAHIQAFEVPSANGRYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 234 ~D~a~~i~~~~~~~~~~g~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
+|+|++++.+++....++.||++ ++.+|+.|+++.+++.++.
T Consensus 230 ~D~a~a~~~~~~~~~~~~~yni~~~~~~s~~~~~~~i~~~~~~ 272 (355)
T PRK10217 230 EDHARALYCVATTGKVGETYNIGGHNERKNLDVVETICELLEE 272 (355)
T ss_pred HHHHHHHHHHHhcCCCCCeEEeCCCCcccHHHHHHHHHHHhcc
Confidence 99999999999876556799997 5788999999999998763
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-37 Score=264.72 Aligned_cols=256 Identities=21% Similarity=0.170 Sum_probs=193.2
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--CCcE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDG 84 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~ 84 (281)
+++|+||||||+||||+++++.|+++|++|++++|+............. ..++.++.+|++|.+++.++++ ++|+
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 78 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNL---AKKIEDHFGDIRDAAKLRKAIAEFKPEI 78 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhh---cCCceEEEccCCCHHHHHHHHhhcCCCE
Confidence 3578999999999999999999999999999999977544332211111 1357789999999999999888 4699
Q ss_pred eEEecccCCC-CCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccC
Q 023515 85 VCHTASPFYH-DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQS 163 (281)
Q Consensus 85 Vih~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 163 (281)
|||+||.... .....+...+++|+.++.+++++|.+....++||++||..+|. .. ....+++|+++..|
T Consensus 79 vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg-~~---~~~~~~~e~~~~~p------ 148 (349)
T TIGR02622 79 VFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYR-ND---EWVWGYRETDPLGG------ 148 (349)
T ss_pred EEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhC-CC---CCCCCCccCCCCCC------
Confidence 9999985322 1223345788999999999999998862278999999986653 21 11223566655443
Q ss_pred CchhhhhHHHHHHHHHHHHHhc-------CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCC-C--CCCCCccceeH
Q 023515 164 ELWYPLSKTLAEDAAWKFAKEK-------SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ-T--YPNVTFGWVNV 233 (281)
Q Consensus 164 ~~~Y~~sK~~~e~~~~~~~~~~-------g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~i~~ 233 (281)
.++|+.+|.++|.+++.+++++ +++++++||+++|||+.......+..++.....+.+ . .+.+.++|+|+
T Consensus 149 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~rd~i~v 228 (349)
T TIGR02622 149 HDPYSSSKACAELVIASYRSSFFGVANFHGIKIASARAGNVIGGGDWAEDRLIPDVIRAFSSNKIVIIRNPDATRPWQHV 228 (349)
T ss_pred CCcchhHHHHHHHHHHHHHHHhhcccccCCCcEEEEccCcccCCCcchhhhhhHHHHHHHhcCCCeEECCCCcccceeeH
Confidence 3569999999999999987754 899999999999999753222234555666666653 2 26789999999
Q ss_pred HHHHHHHHHhhcCC-----CCCccEEEec---CCCCHHHHHHHHHHhCCC
Q 023515 234 KDVANAHIQAFEVP-----SANGRYCLVE---RVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 234 ~D~a~~i~~~~~~~-----~~~g~~~~~~---~~~t~~e~~~~i~~~~~~ 275 (281)
+|+|++++.++++. ..++.||+++ ...+..|+++.+.+.++.
T Consensus 229 ~D~a~a~~~~~~~~~~~~~~~~~~yni~s~~~~~~s~~~~~~~i~~~~~~ 278 (349)
T TIGR02622 229 LEPLSGYLLLAEKLFTGQAEFAGAWNFGPRASDNARVVELVVDALEFWWG 278 (349)
T ss_pred HHHHHHHHHHHHHHhhcCccccceeeeCCCcccCcCHHHHHHHHHHHhcC
Confidence 99999999887642 2246999973 589999999999887653
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=261.47 Aligned_cols=253 Identities=17% Similarity=0.188 Sum_probs=191.3
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC--cchhhhhhhc--cCCCCcEEEEEcCCCCcCcHHHHhc--CCc
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND--PKKTRHLLAL--DGASERLQLFKANLLEEGSFDSIVD--GCD 83 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~--~~~~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~--~~d 83 (281)
|+|||||||||||++|+++|+++|++|++++|+... ...+..+... .....+++++++|++|.+.+.++++ ++|
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d 80 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIKPT 80 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999997642 1222211110 0002358999999999999999988 469
Q ss_pred EeEEecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCc---cEEEEeccceeeecCCCCCCCCeeeecCCCCChhh
Q 023515 84 GVCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSI---KRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEV 159 (281)
Q Consensus 84 ~Vih~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~---~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~ 159 (281)
+|||+|+..... ........+++|+.|+.+++++|.+. ++ ++|||+||..+|+ .. ...+++|+.+..|.
T Consensus 81 ~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~-~~~~~~~~v~~SS~~vyg-~~----~~~~~~E~~~~~p~- 153 (343)
T TIGR01472 81 EIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTL-GLIKSVKFYQASTSELYG-KV----QEIPQNETTPFYPR- 153 (343)
T ss_pred EEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHh-CCCcCeeEEEeccHHhhC-CC----CCCCCCCCCCCCCC-
Confidence 999999974321 11222367788999999999999986 44 3899999987664 21 12346777765543
Q ss_pred hccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCC--CccHHHHHHHHhCCC---CC--CCCCcccee
Q 023515 160 CKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL--NTSAAAVLSLIKGAQ---TY--PNVTFGWVN 232 (281)
Q Consensus 160 ~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~--~~~~~~~~~~~~~~~---~~--~~~~~~~i~ 232 (281)
++|+.||.++|.+++.++++++++++..|+.++|||...... ......+.++..+.+ .+ |++.++|+|
T Consensus 154 -----~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~ 228 (343)
T TIGR01472 154 -----SPYAAAKLYAHWITVNYREAYGLFAVNGILFNHESPRRGENFVTRKITRAAAKIKLGLQEKLYLGNLDAKRDWGH 228 (343)
T ss_pred -----ChhHHHHHHHHHHHHHHHHHhCCceEEEeecccCCCCCCccccchHHHHHHHHHHcCCCCceeeCCCccccCcee
Confidence 679999999999999998888999999999999999743221 112233444555542 22 578999999
Q ss_pred HHHHHHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 233 VKDVANAHIQAFEVPSANGRYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 233 ~~D~a~~i~~~~~~~~~~g~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
++|+|++++.+++++. .+.||++ ++++|+.|+++.+.+.+|.
T Consensus 229 V~D~a~a~~~~~~~~~-~~~yni~~g~~~s~~e~~~~i~~~~g~ 271 (343)
T TIGR01472 229 AKDYVEAMWLMLQQDK-PDDYVIATGETHSVREFVEVSFEYIGK 271 (343)
T ss_pred HHHHHHHHHHHHhcCC-CccEEecCCCceeHHHHHHHHHHHcCC
Confidence 9999999999998754 4689987 6899999999999999874
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=279.11 Aligned_cols=255 Identities=15% Similarity=0.252 Sum_probs=192.5
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHC-CCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCc-HHHHhcCCcE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSR-GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGS-FDSIVDGCDG 84 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-~~~~~~~~d~ 84 (281)
..+|+|||||||||||++|+++|+++ ||+|++++|....... ... ..+++++.+|++|... +.++++++|+
T Consensus 313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~---~~~----~~~~~~~~gDl~d~~~~l~~~l~~~D~ 385 (660)
T PRK08125 313 KRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISR---FLG----HPRFHFVEGDISIHSEWIEYHIKKCDV 385 (660)
T ss_pred hcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhhh---hcC----CCceEEEeccccCcHHHHHHHhcCCCE
Confidence 35789999999999999999999986 7999999997643221 110 1368999999998765 5677889999
Q ss_pred eEEecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhc-c
Q 023515 85 VCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCK-Q 162 (281)
Q Consensus 85 Vih~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~-~ 162 (281)
|||+||..... .....+..+++|+.++.+++++|++. + ++|||+||..+|+ .. ...+++|+++..+..+. .
T Consensus 386 ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~-~-~~~V~~SS~~vyg-~~----~~~~~~E~~~~~~~~p~~~ 458 (660)
T PRK08125 386 VLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKY-N-KRIIFPSTSEVYG-MC----TDKYFDEDTSNLIVGPINK 458 (660)
T ss_pred EEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhc-C-CeEEEEcchhhcC-CC----CCCCcCccccccccCCCCC
Confidence 99999864421 22233467899999999999999998 6 7999999987654 21 22356777653221111 1
Q ss_pred CCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCC-------CccHHHHHHHHhCCCC--C--CCCCccce
Q 023515 163 SELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL-------NTSAAAVLSLIKGAQT--Y--PNVTFGWV 231 (281)
Q Consensus 163 ~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~-------~~~~~~~~~~~~~~~~--~--~~~~~~~i 231 (281)
+.+.|+.||.++|.+++.+++.+|++++++||+++|||++.... .....++.++..+.+. . +++.++|+
T Consensus 459 p~s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~i~~~i~~~~~~~~i~~~g~g~~~rd~i 538 (660)
T PRK08125 459 QRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLVDGGKQKRCFT 538 (660)
T ss_pred CccchHHHHHHHHHHHHHHHHhcCCceEEEEEceeeCCCccccccccccccchHHHHHHHhcCCCCeEEeCCCceeecee
Confidence 33569999999999999998888999999999999999754211 1234455556555532 2 57889999
Q ss_pred eHHHHHHHHHHhhcCCC---CCccEEEec-C-CCCHHHHHHHHHHhCCC
Q 023515 232 NVKDVANAHIQAFEVPS---ANGRYCLVE-R-VSHYSEIVNIIRELYPA 275 (281)
Q Consensus 232 ~~~D~a~~i~~~~~~~~---~~g~~~~~~-~-~~t~~e~~~~i~~~~~~ 275 (281)
|++|+|++++.+++++. .+++||+++ + .+|++|+++.+.+.+|.
T Consensus 539 ~v~Dva~a~~~~l~~~~~~~~g~iyni~~~~~~~s~~el~~~i~~~~g~ 587 (660)
T PRK08125 539 DIRDGIEALFRIIENKDNRCDGQIINIGNPDNEASIRELAEMLLASFEK 587 (660)
T ss_pred eHHHHHHHHHHHHhccccccCCeEEEcCCCCCceeHHHHHHHHHHHhcc
Confidence 99999999999998753 234899975 3 68999999999998874
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=257.69 Aligned_cols=251 Identities=16% Similarity=0.139 Sum_probs=188.7
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 87 (281)
++|+|||||||||||++++++|+++||+|++++|....... .. ...++++.+|+++.+.+..+++++|+|||
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~--~~------~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih 91 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMS--ED------MFCHEFHLVDLRVMENCLKVTKGVDHVFN 91 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccc--cc------cccceEEECCCCCHHHHHHHHhCCCEEEE
Confidence 46899999999999999999999999999999986432110 00 01357888999998888888889999999
Q ss_pred ecccCCCC--CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCC--CCChhhhccC
Q 023515 88 TASPFYHD--AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETW--FSDPEVCKQS 163 (281)
Q Consensus 88 ~a~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~--~~~~~~~~~~ 163 (281)
+|+..... .........+.|+.++.+++++|++. ++++|||+||..+|. .........++.|+. +.. +
T Consensus 92 ~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~-~vk~~V~~SS~~vYg-~~~~~~~~~~~~E~~~~p~~------p 163 (370)
T PLN02695 92 LAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARIN-GVKRFFYASSACIYP-EFKQLETNVSLKESDAWPAE------P 163 (370)
T ss_pred cccccCCccccccCchhhHHHHHHHHHHHHHHHHHh-CCCEEEEeCchhhcC-CccccCcCCCcCcccCCCCC------C
Confidence 99864321 11222356788999999999999997 889999999987654 221111112345543 333 3
Q ss_pred CchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCC--Cc-cHHHHHHHHhC-CC--CC--CCCCccceeHHH
Q 023515 164 ELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL--NT-SAAAVLSLIKG-AQ--TY--PNVTFGWVNVKD 235 (281)
Q Consensus 164 ~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~--~~-~~~~~~~~~~~-~~--~~--~~~~~~~i~~~D 235 (281)
.+.|+.+|.++|.+++.+++++|++++++||+++|||+..... .. ...++.++..+ .+ .+ +++.++|+|++|
T Consensus 164 ~s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~g~~~r~~i~v~D 243 (370)
T PLN02695 164 QDAYGLEKLATEELCKHYTKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDEFEMWGDGKQTRSFTFIDE 243 (370)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCCEEEEEECCccCCCCCccccccccHHHHHHHHHcCCCCeEEeCCCCeEEeEEeHHH
Confidence 4679999999999999998888999999999999999754221 11 23444555543 22 22 578899999999
Q ss_pred HHHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 236 VANAHIQAFEVPSANGRYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 236 ~a~~i~~~~~~~~~~g~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
++++++.++++. ..+.||++ ++.++++|+++.+.+..|.
T Consensus 244 ~a~ai~~~~~~~-~~~~~nv~~~~~~s~~el~~~i~~~~g~ 283 (370)
T PLN02695 244 CVEGVLRLTKSD-FREPVNIGSDEMVSMNEMAEIALSFENK 283 (370)
T ss_pred HHHHHHHHHhcc-CCCceEecCCCceeHHHHHHHHHHHhCC
Confidence 999999988764 35689997 5789999999999988774
|
|
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=260.94 Aligned_cols=250 Identities=21% Similarity=0.248 Sum_probs=186.1
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCc-chhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP-KKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+.|+|||||||||||++|+++|+++|++|++++|..... ..+.... . ..+++++.+|+.+.. +.++|+||
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~~~~~~~~~---~-~~~~~~~~~Di~~~~-----~~~~D~Vi 189 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENLVHLF---G-NPRFELIRHDVVEPI-----LLEVDQIY 189 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCccHhHhhhhc---c-CCceEEEECcccccc-----ccCCCEEE
Confidence 357899999999999999999999999999999864321 1111111 1 135788889987642 45799999
Q ss_pred EecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCc
Q 023515 87 HTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL 165 (281)
Q Consensus 87 h~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 165 (281)
|+|+..... ........+++|+.++.+++++|++. +. +|||+||..+|. +. ...+++|+.+... .+..+.+
T Consensus 190 HlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~-g~-r~V~~SS~~VYg-~~----~~~p~~E~~~~~~-~p~~p~s 261 (436)
T PLN02166 190 HLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV-GA-RFLLTSTSEVYG-DP----LEHPQKETYWGNV-NPIGERS 261 (436)
T ss_pred ECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHh-CC-EEEEECcHHHhC-CC----CCCCCCccccccC-CCCCCCC
Confidence 999864321 12233588899999999999999997 64 899999987764 22 1234556532110 1112345
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCC-ccHHHHHHHHhCCC--CC--CCCCccceeHHHHHHHH
Q 023515 166 WYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLN-TSAAAVLSLIKGAQ--TY--PNVTFGWVNVKDVANAH 240 (281)
Q Consensus 166 ~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~-~~~~~~~~~~~~~~--~~--~~~~~~~i~~~D~a~~i 240 (281)
.|+.+|..+|++++.+.+.++++++++||+++|||++..... ....++.++..+.+ .+ +++.++|+|++|+|+++
T Consensus 262 ~Yg~SK~~aE~~~~~y~~~~~l~~~ilR~~~vYGp~~~~~~~~~i~~~i~~~l~~~~i~v~g~g~~~rdfi~V~Dva~ai 341 (436)
T PLN02166 262 CYDEGKRTAETLAMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQTIRKQPMTVYGDGKQTRSFQYVSDLVDGL 341 (436)
T ss_pred chHHHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCCCCCccchHHHHHHHHhcCCCcEEeCCCCeEEeeEEHHHHHHHH
Confidence 699999999999999988889999999999999998643222 23455666666663 23 46789999999999999
Q ss_pred HHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 241 IQAFEVPSANGRYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 241 ~~~~~~~~~~g~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
+.+++.. ..|+||++ ++.+|+.|+++.+.+.++.
T Consensus 342 ~~~~~~~-~~giyNIgs~~~~Si~ela~~I~~~~g~ 376 (436)
T PLN02166 342 VALMEGE-HVGPFNLGNPGEFTMLELAEVVKETIDS 376 (436)
T ss_pred HHHHhcC-CCceEEeCCCCcEeHHHHHHHHHHHhCC
Confidence 9999754 45799987 5789999999999999874
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=254.20 Aligned_cols=255 Identities=18% Similarity=0.163 Sum_probs=192.8
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCc--chhhhhhh-ccCCCCcEEEEEcCCCCcCcHHHHhc--C
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP--KKTRHLLA-LDGASERLQLFKANLLEEGSFDSIVD--G 81 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~--~ 81 (281)
.++|+||||||+||||++++++|+++|++|++++|+.... ..+..+.. ......++.++.+|++|.+.+.++++ +
T Consensus 4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 83 (340)
T PLN02653 4 PPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDIK 83 (340)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHcC
Confidence 4578999999999999999999999999999999875421 12222110 00112358899999999999998887 4
Q ss_pred CcEeEEecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCcc-----EEEEeccceeeecCCCCCCCCeeeecCCCC
Q 023515 82 CDGVCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIK-----RVVLTSSMAAVLNTGKPRTPDVVVDETWFS 155 (281)
Q Consensus 82 ~d~Vih~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-----~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~ 155 (281)
+|+|||+|+..... ........+++|+.++.+++++|++. +++ +||++||..+|+ .. . .+++|+++.
T Consensus 84 ~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~-~~~~~~~~~~v~~Ss~~vyg-~~----~-~~~~E~~~~ 156 (340)
T PLN02653 84 PDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLH-GQETGRQIKYYQAGSSEMYG-ST----P-PPQSETTPF 156 (340)
T ss_pred CCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHh-ccccccceeEEEeccHHHhC-CC----C-CCCCCCCCC
Confidence 79999999974321 12233477799999999999999987 543 899999986654 21 1 156777766
Q ss_pred ChhhhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCC--ccHHHHHHHHhCC--CCC---CCCCc
Q 023515 156 DPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLN--TSAAAVLSLIKGA--QTY---PNVTF 228 (281)
Q Consensus 156 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~--~~~~~~~~~~~~~--~~~---~~~~~ 228 (281)
.|. +.|+.||.++|.+++.+++++++.++..|+.++|||+...... .+..++.++..+. ..+ +++.+
T Consensus 157 ~p~------~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~r 230 (340)
T PLN02653 157 HPR------SPYAVAKVAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRAVGRIKVGLQKKLFLGNLDASR 230 (340)
T ss_pred CCC------ChhHHHHHHHHHHHHHHHHHcCCeEEEeeeccccCCCCCcccchhHHHHHHHHHHcCCCCceEeCCCccee
Confidence 543 5699999999999999998899999999999999997443211 1122233444554 222 47889
Q ss_pred cceeHHHHHHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 229 GWVNVKDVANAHIQAFEVPSANGRYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 229 ~~i~~~D~a~~i~~~~~~~~~~g~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
+|+|++|+|++++.++++.. .+.||++ ++++|+.|+++.+.+.+|.
T Consensus 231 d~i~v~D~a~a~~~~~~~~~-~~~yni~~g~~~s~~e~~~~i~~~~g~ 277 (340)
T PLN02653 231 DWGFAGDYVEAMWLMLQQEK-PDDYVVATEESHTVEEFLEEAFGYVGL 277 (340)
T ss_pred cceeHHHHHHHHHHHHhcCC-CCcEEecCCCceeHHHHHHHHHHHcCC
Confidence 99999999999999998754 4689987 6889999999999998874
|
|
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=258.81 Aligned_cols=249 Identities=20% Similarity=0.233 Sum_probs=184.3
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCc-chhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP-KKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
++|+|||||||||||++|+++|+++|++|++++|..... +..... ....+++++.+|+.++ ++.++|+||
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~~~~~~~----~~~~~~~~i~~D~~~~-----~l~~~D~Vi 188 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENVMHH----FSNPNFELIRHDVVEP-----ILLEVDQIY 188 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCccchhhhhhh----ccCCceEEEECCccCh-----hhcCCCEEE
Confidence 568999999999999999999999999999998754321 111111 1123678889998764 345799999
Q ss_pred EecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCc
Q 023515 87 HTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL 165 (281)
Q Consensus 87 h~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 165 (281)
|+|+..... ...+....+++|+.++.+++++|++. ++ +|||+||..+|.. . ...+.+|+.+.... +..+.+
T Consensus 189 HlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~-g~-r~V~~SS~~VYg~-~----~~~p~~E~~~~~~~-P~~~~s 260 (442)
T PLN02206 189 HLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV-GA-RFLLTSTSEVYGD-P----LQHPQVETYWGNVN-PIGVRS 260 (442)
T ss_pred EeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHh-CC-EEEEECChHHhCC-C----CCCCCCccccccCC-CCCccc
Confidence 999864321 22234588899999999999999998 65 8999999877642 1 12234555321111 111235
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCC-ccHHHHHHHHhCCC--CC--CCCCccceeHHHHHHHH
Q 023515 166 WYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLN-TSAAAVLSLIKGAQ--TY--PNVTFGWVNVKDVANAH 240 (281)
Q Consensus 166 ~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~-~~~~~~~~~~~~~~--~~--~~~~~~~i~~~D~a~~i 240 (281)
.|+.+|.++|+++..+.+.++++++++||+++|||....... ....++.+...+.+ .+ +++.++|+|++|+|+++
T Consensus 261 ~Y~~SK~~aE~~~~~y~~~~g~~~~ilR~~~vyGp~~~~~~~~~v~~~i~~~l~~~~i~i~g~G~~~rdfi~V~Dva~ai 340 (442)
T PLN02206 261 CYDEGKRTAETLTMDYHRGANVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL 340 (442)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCccccchHHHHHHHHHcCCCcEEeCCCCEEEeEEeHHHHHHHH
Confidence 699999999999999988889999999999999997543222 23345556666553 22 46789999999999999
Q ss_pred HHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCC
Q 023515 241 IQAFEVPSANGRYCLV-ERVSHYSEIVNIIRELYP 274 (281)
Q Consensus 241 ~~~~~~~~~~g~~~~~-~~~~t~~e~~~~i~~~~~ 274 (281)
+.++++. ..|.||++ ++.+++.|+++.+.+.++
T Consensus 341 ~~a~e~~-~~g~yNIgs~~~~sl~Elae~i~~~~g 374 (442)
T PLN02206 341 MRLMEGE-HVGPFNLGNPGEFTMLELAKVVQETID 374 (442)
T ss_pred HHHHhcC-CCceEEEcCCCceeHHHHHHHHHHHhC
Confidence 9998754 45799997 578999999999999885
|
|
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-35 Score=252.44 Aligned_cols=257 Identities=19% Similarity=0.228 Sum_probs=189.1
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCE-EEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--CCcEeE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYT-VKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVC 86 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~Vi 86 (281)
|+|||||||||||++++++|+++|++ |+++++..... ......... ...++.++.+|++|.+++.++++ ++|+||
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 78 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAG-NLESLADVS-DSERYVFEHADICDRAELDRIFAQHQPDAVM 78 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccc-hHHHHHhcc-cCCceEEEEecCCCHHHHHHHHHhcCCCEEE
Confidence 47999999999999999999999975 55555532111 111111111 12357889999999999999887 589999
Q ss_pred EecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCC--------CccEEEEeccceeeecCCCCCC-----CCeeeecC
Q 023515 87 HTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFP--------SIKRVVLTSSMAAVLNTGKPRT-----PDVVVDET 152 (281)
Q Consensus 87 h~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~--------~~~~~v~~SS~~~~~~~~~~~~-----~~~~~~e~ 152 (281)
|+||..... .....+.++++|+.|+.+++++|.+.+ ++++||++||.++|.....+.. ...+++|+
T Consensus 79 h~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~E~ 158 (352)
T PRK10084 79 HLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHPDEVENSEELPLFTET 158 (352)
T ss_pred ECCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCCCccccccccccCCCcccc
Confidence 999974321 123346889999999999999998742 3568999999876642111000 01235666
Q ss_pred CCCChhhhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC--CCC--CCCCc
Q 023515 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA--QTY--PNVTF 228 (281)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~ 228 (281)
.+..| .+.|+.+|.++|.+++.+++++|++++++|++.+|||...+. ......+..+..+. +.+ +++.+
T Consensus 159 ~~~~p------~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~ 231 (352)
T PRK10084 159 TAYAP------SSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFPE-KLIPLVILNALEGKPLPIYGKGDQIR 231 (352)
T ss_pred CCCCC------CChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCCcCcc-chHHHHHHHHhcCCCeEEeCCCCeEE
Confidence 65554 367999999999999999888999999999999999985332 22344555555554 233 57889
Q ss_pred cceeHHHHHHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 229 GWVNVKDVANAHIQAFEVPSANGRYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 229 ~~i~~~D~a~~i~~~~~~~~~~g~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
+|+|++|+|++++.+++++..++.||++ ++..++.|+++.+++.++.
T Consensus 232 ~~v~v~D~a~a~~~~l~~~~~~~~yni~~~~~~s~~~~~~~i~~~~~~ 279 (352)
T PRK10084 232 DWLYVEDHARALYKVVTEGKAGETYNIGGHNEKKNLDVVLTICDLLDE 279 (352)
T ss_pred eeEEHHHHHHHHHHHHhcCCCCceEEeCCCCcCcHHHHHHHHHHHhcc
Confidence 9999999999999999876556799997 4788999999999988864
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=249.21 Aligned_cols=248 Identities=29% Similarity=0.397 Sum_probs=194.1
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEec
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a 89 (281)
|+|+||||+||||+++++.|+++|++|++++|++.....+. ..+++++++|++|.+++.++++++|+|||+|
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~--------~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a 72 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLE--------GLDVEIVEGDLRDPASLRKAVAGCRALFHVA 72 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccc--------cCCceEEEeeCCCHHHHHHHHhCCCEEEEec
Confidence 47999999999999999999999999999999765432211 1258899999999999999999999999999
Q ss_pred ccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchhhh
Q 023515 90 SPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPL 169 (281)
Q Consensus 90 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~ 169 (281)
+.... ....++..+++|+.++.++++++.+. ++++||++||..++... ....+++|+.+..+.. ....|+.
T Consensus 73 ~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~SS~~~~~~~----~~~~~~~e~~~~~~~~---~~~~Y~~ 143 (328)
T TIGR03466 73 ADYRL-WAPDPEEMYAANVEGTRNLLRAALEA-GVERVVYTSSVATLGVR----GDGTPADETTPSSLDD---MIGHYKR 143 (328)
T ss_pred eeccc-CCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEechhhcCcC----CCCCCcCccCCCCccc---ccChHHH
Confidence 86432 23345588999999999999999997 78899999998776421 1223567776654421 1346999
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC-CCCCCCCccceeHHHHHHHHHHhhcCCC
Q 023515 170 SKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA-QTYPNVTFGWVNVKDVANAHIQAFEVPS 248 (281)
Q Consensus 170 sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~D~a~~i~~~~~~~~ 248 (281)
+|.++|++++.+..+++++++++||+++|||...... .....+.....+. +...+...+|+|++|+|++++.+++++.
T Consensus 144 sK~~~e~~~~~~~~~~~~~~~ilR~~~~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~ 222 (328)
T TIGR03466 144 SKFLAEQAALEMAAEKGLPVVIVNPSTPIGPRDIKPT-PTGRIIVDFLNGKMPAYVDTGLNLVHVDDVAEGHLLALERGR 222 (328)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCCccCCCCCCCCC-cHHHHHHHHHcCCCceeeCCCcceEEHHHHHHHHHHHHhCCC
Confidence 9999999999998888999999999999999754221 1222333333333 4444556789999999999999998765
Q ss_pred CCccEEEecCCCCHHHHHHHHHHhCCC
Q 023515 249 ANGRYCLVERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 249 ~~g~~~~~~~~~t~~e~~~~i~~~~~~ 275 (281)
.+..|+++++.+++.|+++.+.+.+|.
T Consensus 223 ~~~~~~~~~~~~s~~e~~~~i~~~~g~ 249 (328)
T TIGR03466 223 IGERYILGGENLTLKQILDKLAEITGR 249 (328)
T ss_pred CCceEEecCCCcCHHHHHHHHHHHhCC
Confidence 444788878899999999999999874
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=250.18 Aligned_cols=237 Identities=20% Similarity=0.222 Sum_probs=172.3
Q ss_pred EEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcC---c-HHHHhc-----CC
Q 023515 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEG---S-FDSIVD-----GC 82 (281)
Q Consensus 12 ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~---~-~~~~~~-----~~ 82 (281)
|||||||||||++|+++|+++|++++++.|+....... ..+..+|+.|.. + +..+++ ++
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~~~~~~~------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 69 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKF------------VNLVDLDIADYMDKEDFLAQIMAGDDFGDI 69 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEEecCCCcchHH------------HhhhhhhhhhhhhHHHHHHHHhcccccCCc
Confidence 89999999999999999999999877776654332110 112234554433 2 233332 68
Q ss_pred cEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhcc
Q 023515 83 DGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQ 162 (281)
Q Consensus 83 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 162 (281)
|+|||+||.......+ .+..++.|+.++.+++++|++. ++ +|||+||.++|. .. ...+.+|+.+..|
T Consensus 70 d~Vih~A~~~~~~~~~-~~~~~~~n~~~t~~ll~~~~~~-~~-~~i~~SS~~vyg-~~----~~~~~~E~~~~~p----- 136 (308)
T PRK11150 70 EAIFHEGACSSTTEWD-GKYMMDNNYQYSKELLHYCLER-EI-PFLYASSAATYG-GR----TDDFIEEREYEKP----- 136 (308)
T ss_pred cEEEECceecCCcCCC-hHHHHHHHHHHHHHHHHHHHHc-CC-cEEEEcchHHhC-cC----CCCCCccCCCCCC-----
Confidence 9999999864432222 2367899999999999999997 66 699999987664 21 1224566655544
Q ss_pred CCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCc--c-HHHHHHHHhCCC--CC-C--CCCccceeHH
Q 023515 163 SELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNT--S-AAAVLSLIKGAQ--TY-P--NVTFGWVNVK 234 (281)
Q Consensus 163 ~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~--~-~~~~~~~~~~~~--~~-~--~~~~~~i~~~ 234 (281)
.++|+.+|.++|++++.+..+.+++++++||+++|||+..+.... . ..+...+.++.+ .+ + +..++|+|++
T Consensus 137 -~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~r~~i~v~ 215 (308)
T PRK11150 137 -LNVYGYSKFLFDEYVRQILPEANSQICGFRYFNVYGPREGHKGSMASVAFHLNNQLNNGENPKLFEGSENFKRDFVYVG 215 (308)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeeeecCCCCCCCCccchhHHHHHHHHhcCCCCEEecCCCceeeeeeeHH
Confidence 356999999999999999888899999999999999986442211 1 122245555542 22 2 4578999999
Q ss_pred HHHHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 235 DVANAHIQAFEVPSANGRYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 235 D~a~~i~~~~~~~~~~g~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
|+|++++.+++... +|.||++ ++.+|+.|+++.+.+.++.
T Consensus 216 D~a~a~~~~~~~~~-~~~yni~~~~~~s~~el~~~i~~~~~~ 256 (308)
T PRK11150 216 DVAAVNLWFWENGV-SGIFNCGTGRAESFQAVADAVLAYHKK 256 (308)
T ss_pred HHHHHHHHHHhcCC-CCeEEcCCCCceeHHHHHHHHHHHhCC
Confidence 99999999988653 5799997 5779999999999998863
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=270.87 Aligned_cols=258 Identities=19% Similarity=0.218 Sum_probs=192.7
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHC--CCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHh--cCC
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSR--GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV--DGC 82 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~--~~~ 82 (281)
.++|+|||||||||||++|+++|+++ +++|++++|.... ..+..+... ....+++++.+|++|.+.+..++ .++
T Consensus 4 ~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~-~~~~~l~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 81 (668)
T PLN02260 4 YEPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYC-SNLKNLNPS-KSSPNFKFVKGDIASADLVNYLLITEGI 81 (668)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCcc-chhhhhhhc-ccCCCeEEEECCCCChHHHHHHHhhcCC
Confidence 45789999999999999999999998 6899999875311 111111111 11246899999999988887765 489
Q ss_pred cEeEEecccCCCCC-CCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhc
Q 023515 83 DGVCHTASPFYHDA-KDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCK 161 (281)
Q Consensus 83 d~Vih~a~~~~~~~-~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 161 (281)
|+|||+|+...... .......+++|+.++.+++++|++...+++|||+||..+|. .... ......+|+++..|
T Consensus 82 D~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vyg-~~~~-~~~~~~~E~~~~~p---- 155 (668)
T PLN02260 82 DTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYG-ETDE-DADVGNHEASQLLP---- 155 (668)
T ss_pred CEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHhC-CCcc-ccccCccccCCCCC----
Confidence 99999999744321 11223778999999999999999973378999999987664 2211 11112345554443
Q ss_pred cCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCC--CC--CCCCccceeHHHHH
Q 023515 162 QSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--TY--PNVTFGWVNVKDVA 237 (281)
Q Consensus 162 ~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~i~~~D~a 237 (281)
.++|+.+|.++|.+++.+.++++++++++||++||||...+. .....++.....+.+ .+ +.+.++|+|++|+|
T Consensus 156 --~~~Y~~sK~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~~~~-~~i~~~~~~a~~g~~i~i~g~g~~~r~~ihV~Dva 232 (668)
T PLN02260 156 --TNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPE-KLIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVA 232 (668)
T ss_pred --CCCcHHHHHHHHHHHHHHHHHcCCCEEEECcccccCcCCCcc-cHHHHHHHHHhCCCCeEEecCCCceEeeEEHHHHH
Confidence 356999999999999999888899999999999999985432 223344444555552 22 56789999999999
Q ss_pred HHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 238 NAHIQAFEVPSANGRYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 238 ~~i~~~~~~~~~~g~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
++++.++++...+++||++ ++.+++.|+++.+.+.+|.
T Consensus 233 ~a~~~~l~~~~~~~vyni~~~~~~s~~el~~~i~~~~g~ 271 (668)
T PLN02260 233 EAFEVVLHKGEVGHVYNIGTKKERRVIDVAKDICKLFGL 271 (668)
T ss_pred HHHHHHHhcCCCCCEEEECCCCeeEHHHHHHHHHHHhCC
Confidence 9999999877667799997 4789999999999999874
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=250.84 Aligned_cols=257 Identities=21% Similarity=0.247 Sum_probs=190.5
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcch-hhhhhhcc-CCCCcEEEEEcCCCCcCcHHHHhc--CC
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKK-TRHLLALD-GASERLQLFKANLLEEGSFDSIVD--GC 82 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~--~~ 82 (281)
|++++|+|||||||||++++++|+++|++|++++|....... ........ ....++.++.+|++|++.+..+++ ++
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~ 82 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTRF 82 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCCC
Confidence 457899999999999999999999999999999876432211 11111000 012368899999999999988886 68
Q ss_pred cEeEEecccCCC-CCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhc
Q 023515 83 DGVCHTASPFYH-DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCK 161 (281)
Q Consensus 83 d~Vih~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 161 (281)
|+|||+|+.... .....+...+++|+.++.+++++|.+. ++++||++||..+|. . ....+++|+++..|.
T Consensus 83 d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~Ss~~vyg-~----~~~~~~~E~~~~~~~--- 153 (352)
T PLN02240 83 DAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKH-GCKKLVFSSSATVYG-Q----PEEVPCTEEFPLSAT--- 153 (352)
T ss_pred CEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEccHHHhC-C----CCCCCCCCCCCCCCC---
Confidence 999999986432 122344578999999999999999987 788999999976553 2 123457888766543
Q ss_pred cCCchhhhhHHHHHHHHHHHHHh-cCCcEEEEcCCcccCCCCCCCC--------CccHHHHHHHHhCC-C---C------
Q 023515 162 QSELWYPLSKTLAEDAAWKFAKE-KSIDLVTINPAMVIGPLLQPTL--------NTSAAAVLSLIKGA-Q---T------ 222 (281)
Q Consensus 162 ~~~~~Y~~sK~~~e~~~~~~~~~-~g~~~~~irp~~v~g~~~~~~~--------~~~~~~~~~~~~~~-~---~------ 222 (281)
+.|+.+|.++|.+++.+++. .+++++++|++++||+.....+ ......+.++..+. + .
T Consensus 154 ---~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~R~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 230 (352)
T PLN02240 154 ---NPYGRTKLFIEEICRDIHASDPEWKIILLRYFNPVGAHPSGRIGEDPKGIPNNLMPYVQQVAVGRRPELTVFGNDYP 230 (352)
T ss_pred ---CHHHHHHHHHHHHHHHHHHhcCCCCEEEEeecCcCCCCccccccCCCCCCcchHHHHHHHHHhCCCCceEEeCCCCC
Confidence 56999999999999988754 5899999999999997532111 11223344444432 1 1
Q ss_pred --CCCCCccceeHHHHHHHHHHhhcCC----CC-CccEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 223 --YPNVTFGWVNVKDVANAHIQAFEVP----SA-NGRYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 223 --~~~~~~~~i~~~D~a~~i~~~~~~~----~~-~g~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
.|.+.++|+|++|+|++++.++.+. .. ++.||++ ++.+|++|+++.+.+.++.
T Consensus 231 ~~~g~~~~~~i~v~D~a~a~~~a~~~~~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~ 291 (352)
T PLN02240 231 TKDGTGVRDYIHVMDLADGHIAALRKLFTDPDIGCEAYNLGTGKGTSVLEMVAAFEKASGK 291 (352)
T ss_pred CCCCCEEEeeEEHHHHHHHHHHHHhhhhhccCCCCceEEccCCCcEeHHHHHHHHHHHhCC
Confidence 3477899999999999999888642 22 3589987 6889999999999999873
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=248.46 Aligned_cols=234 Identities=16% Similarity=0.178 Sum_probs=179.9
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~ 84 (281)
+++|+||||||+||||++++++|+++| ++|++++|+..+...+.... . ..++.++++|++|++.+.++++++|+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~--~--~~~~~~v~~Dl~d~~~l~~~~~~iD~ 77 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKF--P--APCLRFFIGDVRDKERLTRALRGVDY 77 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHh--C--CCcEEEEEccCCCHHHHHHHHhcCCE
Confidence 458899999999999999999999986 78999998754432222111 1 13688999999999999999999999
Q ss_pred eEEecccCCC-CCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccC
Q 023515 85 VCHTASPFYH-DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQS 163 (281)
Q Consensus 85 Vih~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 163 (281)
|||+||.... .......+.+++|+.|+.+++++|.+. ++++||++||..... +
T Consensus 78 Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~-~~~~iV~~SS~~~~~-------------------------p 131 (324)
T TIGR03589 78 VVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDN-GVKRVVALSTDKAAN-------------------------P 131 (324)
T ss_pred EEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCCCC-------------------------C
Confidence 9999986322 122233478999999999999999997 788999999953221 1
Q ss_pred CchhhhhHHHHHHHHHHHHH---hcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC---CCC-CCCCccceeHHHH
Q 023515 164 ELWYPLSKTLAEDAAWKFAK---EKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA---QTY-PNVTFGWVNVKDV 236 (281)
Q Consensus 164 ~~~Y~~sK~~~e~~~~~~~~---~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~i~~~D~ 236 (281)
.++|+.+|.++|.+++.++. .+|++++++|||++|||+.. .+..+......+. +.. +.+.++|+|++|+
T Consensus 132 ~~~Y~~sK~~~E~l~~~~~~~~~~~gi~~~~lR~g~v~G~~~~----~i~~~~~~~~~~~~~~~i~~~~~~r~~i~v~D~ 207 (324)
T TIGR03589 132 INLYGATKLASDKLFVAANNISGSKGTRFSVVRYGNVVGSRGS----VVPFFKSLKEEGVTELPITDPRMTRFWITLEQG 207 (324)
T ss_pred CCHHHHHHHHHHHHHHHHHhhccccCcEEEEEeecceeCCCCC----cHHHHHHHHHhCCCCeeeCCCCceEeeEEHHHH
Confidence 24599999999999987643 46999999999999998632 2233333344443 222 5677899999999
Q ss_pred HHHHHHhhcCCCCCccEEEecCCCCHHHHHHHHHHhCC
Q 023515 237 ANAHIQAFEVPSANGRYCLVERVSHYSEIVNIIRELYP 274 (281)
Q Consensus 237 a~~i~~~~~~~~~~g~~~~~~~~~t~~e~~~~i~~~~~ 274 (281)
|++++.++++...+.+|+.++...++.|+++.+.+.++
T Consensus 208 a~a~~~al~~~~~~~~~~~~~~~~sv~el~~~i~~~~~ 245 (324)
T TIGR03589 208 VNFVLKSLERMLGGEIFVPKIPSMKITDLAEAMAPECP 245 (324)
T ss_pred HHHHHHHHhhCCCCCEEccCCCcEEHHHHHHHHHhhCC
Confidence 99999999875433467655678999999999998764
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=244.84 Aligned_cols=245 Identities=28% Similarity=0.363 Sum_probs=194.5
Q ss_pred eEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCC-cEeEEec
Q 023515 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGC-DGVCHTA 89 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-d~Vih~a 89 (281)
+|||||||||||++|++.|+++|++|++++|...+..... .++.++.+|+++.+...++++.. |+|||+|
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~---------~~~~~~~~d~~~~~~~~~~~~~~~d~vih~a 72 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL---------SGVEFVVLDLTDRDLVDELAKGVPDAVIHLA 72 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccccc---------cccceeeecccchHHHHHHHhcCCCEEEEcc
Confidence 4999999999999999999999999999999876554421 35789999999988888888877 9999999
Q ss_pred ccCCCCCCC--ccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecC-CCCChhhhccCCch
Q 023515 90 SPFYHDAKD--PQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDET-WFSDPEVCKQSELW 166 (281)
Q Consensus 90 ~~~~~~~~~--~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~-~~~~~~~~~~~~~~ 166 (281)
+........ .....+++|+.++.+++++|++. ++++|||.||.+++++. ....+++|+ .+..|. ++
T Consensus 73 a~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~-~~~~~v~~ss~~~~~~~----~~~~~~~E~~~~~~p~------~~ 141 (314)
T COG0451 73 AQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAA-GVKRFVFASSVSVVYGD----PPPLPIDEDLGPPRPL------NP 141 (314)
T ss_pred ccCchhhhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCeEEEeCCCceECCC----CCCCCcccccCCCCCC------CH
Confidence 975432221 23358899999999999999996 89999998887666532 233367777 344443 36
Q ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCc--cHHHHHHHHhCCC--CC---CCCCccceeHHHHHHH
Q 023515 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNT--SAAAVLSLIKGAQ--TY---PNVTFGWVNVKDVANA 239 (281)
Q Consensus 167 Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~--~~~~~~~~~~~~~--~~---~~~~~~~i~~~D~a~~ 239 (281)
|+.+|.++|++++.+.+.+|++++++||+++|||+..+.... ....+.+...+.+ .. +...++|+|++|++++
T Consensus 142 Yg~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~ 221 (314)
T COG0451 142 YGVSKLAAEQLLRAYARLYGLPVVILRPFNVYGPGDKPDLSSGVVSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADA 221 (314)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCCCCCcCcHHHHHHHHHhCCCcceEeCCCceeEeeEeHHHHHHH
Confidence 999999999999999887899999999999999987665322 2233444555553 22 3566799999999999
Q ss_pred HHHhhcCCCCCccEEEec-C-CCCHHHHHHHHHHhCCCC
Q 023515 240 HIQAFEVPSANGRYCLVE-R-VSHYSEIVNIIRELYPAF 276 (281)
Q Consensus 240 i~~~~~~~~~~g~~~~~~-~-~~t~~e~~~~i~~~~~~~ 276 (281)
++.+++++... .||+++ . ..++.|+++.+.+.++..
T Consensus 222 ~~~~~~~~~~~-~~ni~~~~~~~~~~e~~~~~~~~~~~~ 259 (314)
T COG0451 222 LLLALENPDGG-VFNIGSGTAEITVRELAEAVAEAVGSK 259 (314)
T ss_pred HHHHHhCCCCc-EEEeCCCCCcEEHHHHHHHHHHHhCCC
Confidence 99999988766 899885 4 799999999999988754
|
|
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=239.73 Aligned_cols=226 Identities=24% Similarity=0.337 Sum_probs=183.2
Q ss_pred EEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcC--CcEeEEec
Q 023515 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG--CDGVCHTA 89 (281)
Q Consensus 12 ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~d~Vih~a 89 (281)
|||||||||||++++++|+++|++|+.+.|+.......... .++.++.+|+.|.+.++++++. +|+|||+|
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~-------~~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~a 73 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEEKK-------LNVEFVIGDLTDKEQLEKLLEKANIDVVIHLA 73 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHHHH-------TTEEEEESETTSHHHHHHHHHHHTESEEEEEB
T ss_pred EEEEccCCHHHHHHHHHHHHcCCcccccccccccccccccc-------ceEEEEEeeccccccccccccccCceEEEEee
Confidence 79999999999999999999999999999987655432221 2689999999999999999985 59999999
Q ss_pred ccCCC-CCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchhh
Q 023515 90 SPFYH-DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYP 168 (281)
Q Consensus 90 ~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~ 168 (281)
+.... .........++.|+.++.+++++|.+. ++++||++||..+|. . ....+++|+.+..|. ++|+
T Consensus 74 ~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~i~~sS~~~y~-~----~~~~~~~e~~~~~~~------~~Y~ 141 (236)
T PF01370_consen 74 AFSSNPESFEDPEEIIEANVQGTRNLLEAAREA-GVKRFIFLSSASVYG-D----PDGEPIDEDSPINPL------SPYG 141 (236)
T ss_dssp SSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHH-TTSEEEEEEEGGGGT-S----SSSSSBETTSGCCHS------SHHH
T ss_pred ccccccccccccccccccccccccccccccccc-ccccccccccccccc-c----ccccccccccccccc------cccc
Confidence 87421 111334588899999999999999998 779999999976654 2 234567888877654 5699
Q ss_pred hhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCC-CC-CCCCccHHHHHHHHhCCC----CCCCCCccceeHHHHHHHHHH
Q 023515 169 LSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPL-LQ-PTLNTSAAAVLSLIKGAQ----TYPNVTFGWVNVKDVANAHIQ 242 (281)
Q Consensus 169 ~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~-~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~D~a~~i~~ 242 (281)
.+|...|++++.+.++++++++++||+.+|||. .. ........++..+..+.+ ..+++.++|+|++|+|++++.
T Consensus 142 ~~K~~~e~~~~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~ 221 (236)
T PF01370_consen 142 ASKRAAEELLRDYAKKYGLRVTILRPPNVYGPGNPNNNSSSFLPSLIRQALKGKPIKIPGDGSQVRDFIHVDDLAEAIVA 221 (236)
T ss_dssp HHHHHHHHHHHHHHHHHTSEEEEEEESEEESTTSSSSSTSSHHHHHHHHHHTTSSEEEESTSSCEEEEEEHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccchhhHHhhcCCcccccCCCCCccceEEHHHHHHHHHH
Confidence 999999999999998889999999999999998 11 122334567777777763 336889999999999999999
Q ss_pred hhcCCC-CCccEEEe
Q 023515 243 AFEVPS-ANGRYCLV 256 (281)
Q Consensus 243 ~~~~~~-~~g~~~~~ 256 (281)
+++++. .+++||++
T Consensus 222 ~~~~~~~~~~~yNig 236 (236)
T PF01370_consen 222 ALENPKAAGGIYNIG 236 (236)
T ss_dssp HHHHSCTTTEEEEES
T ss_pred HHhCCCCCCCEEEeC
Confidence 999988 67799974
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-34 Score=242.55 Aligned_cols=250 Identities=18% Similarity=0.178 Sum_probs=190.4
Q ss_pred eEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCC--cchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcC--CcE
Q 023515 11 VVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPND--PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG--CDG 84 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~d~ 84 (281)
+|+||||||+||++++++|+++| ++|++++|.... ...+.... ...++.++.+|++|++++.++++. +|+
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 76 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLE----DNPRYRFVKGDIGDRELVSRLFTEHQPDA 76 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhc----cCCCcEEEEcCCcCHHHHHHHHhhcCCCE
Confidence 58999999999999999999987 789988874321 11111111 113578899999999999999986 899
Q ss_pred eEEecccCCC-CCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccC
Q 023515 85 VCHTASPFYH-DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQS 163 (281)
Q Consensus 85 Vih~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 163 (281)
|||+|+.... ......+.++++|+.++.+++++|.+.+...++|++||..++.... ...+++|+.+..|
T Consensus 77 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~----~~~~~~e~~~~~~------ 146 (317)
T TIGR01181 77 VVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLE----KGDAFTETTPLAP------ 146 (317)
T ss_pred EEEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCC----CCCCcCCCCCCCC------
Confidence 9999987432 1223445788999999999999999862233899999987764211 1124566665544
Q ss_pred CchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCC--C--CCCCCccceeHHHHHHH
Q 023515 164 ELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--T--YPNVTFGWVNVKDVANA 239 (281)
Q Consensus 164 ~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~i~~~D~a~~ 239 (281)
.+.|+.+|..+|.+++.++.+.+++++++||+.+|||...+. ......+..+..+.+ . .+++.++|+|++|+|++
T Consensus 147 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~i~R~~~i~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~ 225 (317)
T TIGR01181 147 SSPYSASKAASDHLVRAYHRTYGLPALITRCSNNYGPYQFPE-KLIPLMITNALAGKPLPVYGDGQQVRDWLYVEDHCRA 225 (317)
T ss_pred CCchHHHHHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCcc-cHHHHHHHHHhcCCCceEeCCCceEEeeEEHHHHHHH
Confidence 356999999999999999888899999999999999975432 233445555555542 2 25678899999999999
Q ss_pred HHHhhcCCCCCccEEEec-CCCCHHHHHHHHHHhCCC
Q 023515 240 HIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 240 i~~~~~~~~~~g~~~~~~-~~~t~~e~~~~i~~~~~~ 275 (281)
+..++++...+++||+++ ..++++|+++.+.+.++.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~ 262 (317)
T TIGR01181 226 IYLVLEKGRVGETYNIGGGNERTNLEVVETILELLGK 262 (317)
T ss_pred HHHHHcCCCCCceEEeCCCCceeHHHHHHHHHHHhCC
Confidence 999998766566999974 689999999999999874
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-34 Score=240.77 Aligned_cols=224 Identities=16% Similarity=0.063 Sum_probs=170.3
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--CCcEeEE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVCH 87 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~Vih 87 (281)
|+||||||+||||++++++|+++| +|++++|... .+.+|++|.+.+.++++ ++|+|||
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~~-------------------~~~~Dl~d~~~~~~~~~~~~~D~Vih 60 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG-NLIALDVHST-------------------DYCGDFSNPEGVAETVRKIRPDVIVN 60 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC-CEEEeccccc-------------------cccCCCCCHHHHHHHHHhcCCCEEEE
Confidence 479999999999999999999999 7888887531 23589999999998887 5899999
Q ss_pred ecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCch
Q 023515 88 TASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (281)
Q Consensus 88 ~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 166 (281)
+|+..... .....+...++|+.++.+++++|++. +. +|||+||..+|.+. ...+++|+++..|. +.
T Consensus 61 ~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~-g~-~~v~~Ss~~Vy~~~-----~~~p~~E~~~~~P~------~~ 127 (299)
T PRK09987 61 AAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEV-GA-WVVHYSTDYVFPGT-----GDIPWQETDATAPL------NV 127 (299)
T ss_pred CCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEccceEECCC-----CCCCcCCCCCCCCC------CH
Confidence 99975432 22333467789999999999999998 65 79999998876432 23457788776653 66
Q ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCC--CC----CCCCccceeHHHHHHHH
Q 023515 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--TY----PNVTFGWVNVKDVANAH 240 (281)
Q Consensus 167 Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~i~~~D~a~~i 240 (281)
|+.+|.++|++++.+ ..+.+++||+++|||... +....++..+..+.+ .+ +.+.+.+.+.+|+++++
T Consensus 128 Yg~sK~~~E~~~~~~----~~~~~ilR~~~vyGp~~~---~~~~~~~~~~~~~~~~~v~~d~~g~~~~~~~~~d~~~~~~ 200 (299)
T PRK09987 128 YGETKLAGEKALQEH----CAKHLIFRTSWVYAGKGN---NFAKTMLRLAKEREELSVINDQFGAPTGAELLADCTAHAI 200 (299)
T ss_pred HHHHHHHHHHHHHHh----CCCEEEEecceecCCCCC---CHHHHHHHHHhcCCCeEEeCCCcCCCCCHHHHHHHHHHHH
Confidence 999999999999765 346799999999999743 223344444444542 22 34445566778888888
Q ss_pred HHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhC
Q 023515 241 IQAFEVPSANGRYCLV-ERVSHYSEIVNIIRELY 273 (281)
Q Consensus 241 ~~~~~~~~~~g~~~~~-~~~~t~~e~~~~i~~~~ 273 (281)
..++..+...|+||++ ++.+|+.|+++.|.+..
T Consensus 201 ~~~~~~~~~~giyni~~~~~~s~~e~~~~i~~~~ 234 (299)
T PRK09987 201 RVALNKPEVAGLYHLVASGTTTWHDYAALVFEEA 234 (299)
T ss_pred HHhhccCCCCCeEEeeCCCCccHHHHHHHHHHHH
Confidence 8887665555799997 57899999999997753
|
|
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=249.69 Aligned_cols=268 Identities=19% Similarity=0.188 Sum_probs=188.0
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCC---CEEEEEEcCCCCcchhhhhh----hc---------cC------CCCcEEE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRG---YTVKASVRDPNDPKKTRHLL----AL---------DG------ASERLQL 64 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~----~~---------~~------~~~~~~~ 64 (281)
+++|+|||||||||||++|+++|++.+ .+|+++.|.........++. .. .+ ...++++
T Consensus 9 ~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~ 88 (491)
T PLN02996 9 LENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTP 88 (491)
T ss_pred hCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEE
Confidence 578999999999999999999999864 47899999765433322211 00 00 0157899
Q ss_pred EEcCCCCc-------CcHHHHhcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeee
Q 023515 65 FKANLLEE-------GSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVL 137 (281)
Q Consensus 65 ~~~D~~~~-------~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~ 137 (281)
+.||++++ +.+..+++++|+|||+||..... ...+...++|+.|+.+++++|++..++++|||+||.++++
T Consensus 89 i~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~~~--~~~~~~~~~Nv~gt~~ll~~a~~~~~~k~~V~vST~~vyG 166 (491)
T PLN02996 89 VPGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTNFD--ERYDVALGINTLGALNVLNFAKKCVKVKMLLHVSTAYVCG 166 (491)
T ss_pred EecccCCcCCCCChHHHHHHHHhCCCEEEECccccCCc--CCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeeEEec
Confidence 99999843 33667788999999999976532 3456889999999999999999854678999999987765
Q ss_pred cCCCCCCCCeeeecCC-C----------------------------------------CChhhhccCCchhhhhHHHHHH
Q 023515 138 NTGKPRTPDVVVDETW-F----------------------------------------SDPEVCKQSELWYPLSKTLAED 176 (281)
Q Consensus 138 ~~~~~~~~~~~~~e~~-~----------------------------------------~~~~~~~~~~~~Y~~sK~~~e~ 176 (281)
...+ .....++++.. + ..+.......+.|+.||+++|.
T Consensus 167 ~~~~-~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pn~Y~~TK~~aE~ 245 (491)
T PLN02996 167 EKSG-LILEKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAKLHGWPNTYVFTKAMGEM 245 (491)
T ss_pred CCCc-eeeeecCCCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHHHHHhhhhchhHHHhCCCCCchHhhHHHHHH
Confidence 3211 00111111000 0 0000011234569999999999
Q ss_pred HHHHHHHhcCCcEEEEcCCcccCCCCCCCCCcc------HHHHHHHHhCCC----CCCCCCccceeHHHHHHHHHHhhcC
Q 023515 177 AAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTS------AAAVLSLIKGAQ----TYPNVTFGWVNVKDVANAHIQAFEV 246 (281)
Q Consensus 177 ~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~------~~~~~~~~~~~~----~~~~~~~~~i~~~D~a~~i~~~~~~ 246 (281)
+++.++ .+++++++||++|+||...+..... ...+.....|.. ..|++.+|++|+||+|++++.++..
T Consensus 246 lv~~~~--~~lpv~i~RP~~V~G~~~~p~~gwi~~~~~~~~i~~~~~~g~~~~~~gdg~~~~D~v~Vddvv~a~l~a~~~ 323 (491)
T PLN02996 246 LLGNFK--ENLPLVIIRPTMITSTYKEPFPGWIEGLRTIDSVIVGYGKGKLTCFLADPNSVLDVIPADMVVNAMIVAMAA 323 (491)
T ss_pred HHHHhc--CCCCEEEECCCEeccCCcCCCCCcccchhhHHHHHHHhccceEeEEecCCCeecceecccHHHHHHHHHHHH
Confidence 998874 3899999999999999876532211 122222334432 2357899999999999999999875
Q ss_pred C--C--CCccEEEe-c--CCCCHHHHHHHHHHhCCCCCCC
Q 023515 247 P--S--ANGRYCLV-E--RVSHYSEIVNIIRELYPAFQLP 279 (281)
Q Consensus 247 ~--~--~~g~~~~~-~--~~~t~~e~~~~i~~~~~~~~~p 279 (281)
. . ...+||++ + +++|+.|+++.+.+.++..|+.
T Consensus 324 ~~~~~~~~~vYNi~s~~~~~~s~~ei~~~~~~~~~~~p~~ 363 (491)
T PLN02996 324 HAGGQGSEIIYHVGSSLKNPVKFSNLHDFAYRYFSKNPWI 363 (491)
T ss_pred hhccCCCCcEEEecCCCCCcccHHHHHHHHHHHhhhCCCc
Confidence 3 1 23489987 5 6899999999999998876654
|
|
| >KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=224.87 Aligned_cols=252 Identities=20% Similarity=0.210 Sum_probs=196.2
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHC--CCEEEEEEcCCCC--cchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSR--GYTVKASVRDPND--PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-- 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-- 80 (281)
.+.++++||||+||||++.+..+... .++.+.++.-.-- ...++. .....+.+|+++|+.+...+..++.
T Consensus 4 ~~~~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~~~~l~~----~~n~p~ykfv~~di~~~~~~~~~~~~~ 79 (331)
T KOG0747|consen 4 YKEKNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSNLKNLEP----VRNSPNYKFVEGDIADADLVLYLFETE 79 (331)
T ss_pred CccceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccccchhhh----hccCCCceEeeccccchHHHHhhhccC
Confidence 44589999999999999999999987 4677766653211 222221 1123689999999999877777665
Q ss_pred CCcEeEEecccC--CCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChh
Q 023515 81 GCDGVCHTASPF--YHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPE 158 (281)
Q Consensus 81 ~~d~Vih~a~~~--~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~ 158 (281)
.+|.|+|.|+.. ....-++. +..+.|+.++..|+++++..+++++|||+||..+|+.... .....|.+.++|.
T Consensus 80 ~id~vihfaa~t~vd~s~~~~~-~~~~nnil~t~~Lle~~~~sg~i~~fvhvSTdeVYGds~~----~~~~~E~s~~nPt 154 (331)
T KOG0747|consen 80 EIDTVIHFAAQTHVDRSFGDSF-EFTKNNILSTHVLLEAVRVSGNIRRFVHVSTDEVYGDSDE----DAVVGEASLLNPT 154 (331)
T ss_pred chhhhhhhHhhhhhhhhcCchH-HHhcCCchhhhhHHHHHHhccCeeEEEEecccceecCccc----cccccccccCCCC
Confidence 789999999862 22233444 7888999999999999999888999999999987763322 2222377777765
Q ss_pred hhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC--CCC--CCCCccceeHH
Q 023515 159 VCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA--QTY--PNVTFGWVNVK 234 (281)
Q Consensus 159 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~i~~~ 234 (281)
++|+++|+++|.+++++.+.+|++++++|.++||||++-+. ..++.++.-..++. +.. |.+.++|+|++
T Consensus 155 ------npyAasKaAaE~~v~Sy~~sy~lpvv~~R~nnVYGP~q~~~-klipkFi~l~~~~~~~~i~g~g~~~rs~l~ve 227 (331)
T KOG0747|consen 155 ------NPYAASKAAAEMLVRSYGRSYGLPVVTTRMNNVYGPNQYPE-KLIPKFIKLAMRGKEYPIHGDGLQTRSYLYVE 227 (331)
T ss_pred ------CchHHHHHHHHHHHHHHhhccCCcEEEEeccCccCCCcChH-HHhHHHHHHHHhCCCcceecCcccceeeEeHH
Confidence 77999999999999999999999999999999999997542 23445555444454 333 67889999999
Q ss_pred HHHHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCC
Q 023515 235 DVANAHIQAFEVPSANGRYCLV-ERVSHYSEIVNIIRELYP 274 (281)
Q Consensus 235 D~a~~i~~~~~~~~~~g~~~~~-~~~~t~~e~~~~i~~~~~ 274 (281)
|+++++-.++++++.+.+||++ +.+++..|+++.|.+++.
T Consensus 228 D~~ea~~~v~~Kg~~geIYNIgtd~e~~~~~l~k~i~eli~ 268 (331)
T KOG0747|consen 228 DVSEAFKAVLEKGELGEIYNIGTDDEMRVIDLAKDICELFE 268 (331)
T ss_pred HHHHHHHHHHhcCCccceeeccCcchhhHHHHHHHHHHHHH
Confidence 9999999999998777799997 578999999998888764
|
|
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-33 Score=238.88 Aligned_cols=252 Identities=21% Similarity=0.225 Sum_probs=185.2
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcch-hhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--CCcEeE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKK-TRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVC 86 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~Vi 86 (281)
|+|||||||||||++++++|+++|++|++++|....... +....... ..++.++.+|++|.+.+.++++ ++|+||
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vv 78 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLG--GKHPTFVEGDIRNEALLTEILHDHAIDTVI 78 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHhc--CCCceEEEccCCCHHHHHHHHhcCCCCEEE
Confidence 479999999999999999999999999999875332221 11111111 1356788999999998988886 689999
Q ss_pred EecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCC-ChhhhccCC
Q 023515 87 HTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFS-DPEVCKQSE 164 (281)
Q Consensus 87 h~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~-~~~~~~~~~ 164 (281)
|+|+..... ........+++|+.++.+++++|++. ++++||++||..+|. . ....+++|+++. .| .
T Consensus 79 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~Ss~~~yg-~----~~~~~~~E~~~~~~p------~ 146 (338)
T PRK10675 79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNLIFSSSATVYG-D----QPKIPYVESFPTGTP------Q 146 (338)
T ss_pred ECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEeccHHhhC-C----CCCCccccccCCCCC------C
Confidence 999864321 12233478899999999999999998 888999999986653 2 123456777664 22 3
Q ss_pred chhhhhHHHHHHHHHHHHHhc-CCcEEEEcCCcccCCCCCCCC--------CccHHHHHHHHhCC-C---C--------C
Q 023515 165 LWYPLSKTLAEDAAWKFAKEK-SIDLVTINPAMVIGPLLQPTL--------NTSAAAVLSLIKGA-Q---T--------Y 223 (281)
Q Consensus 165 ~~Y~~sK~~~e~~~~~~~~~~-g~~~~~irp~~v~g~~~~~~~--------~~~~~~~~~~~~~~-~---~--------~ 223 (281)
+.|+.+|.++|+++++++++. +++++++|++++|||.....+ ......+.++..+. + . .
T Consensus 147 ~~Y~~sK~~~E~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (338)
T PRK10675 147 SPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTED 226 (338)
T ss_pred ChhHHHHHHHHHHHHHHHHhcCCCcEEEEEeeeecCCCcccccccCCCCChhHHHHHHHHHHhcCCCceEEeCCcCCCCC
Confidence 569999999999999987654 899999999999997522111 11123334444332 1 1 2
Q ss_pred CCCCccceeHHHHHHHHHHhhcCC--CC-CccEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 224 PNVTFGWVNVKDVANAHIQAFEVP--SA-NGRYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 224 ~~~~~~~i~~~D~a~~i~~~~~~~--~~-~g~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
|.+.++|+|++|+|++++.+++.. .. +++||++ ++.+|+.|+++.+.+.+|.
T Consensus 227 g~~~~~~v~v~D~a~~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~ 282 (338)
T PRK10675 227 GTGVRDYIHVMDLADGHVAAMEKLANKPGVHIYNLGAGVGSSVLDVVNAFSKACGK 282 (338)
T ss_pred CcEEEeeEEHHHHHHHHHHHHHhhhccCCCceEEecCCCceeHHHHHHHHHHHhCC
Confidence 467799999999999999998752 22 3489997 5789999999999999874
|
|
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=236.88 Aligned_cols=233 Identities=15% Similarity=0.166 Sum_probs=176.2
Q ss_pred EEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--CCcEeEEecc
Q 023515 13 CVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVCHTAS 90 (281)
Q Consensus 13 lItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~Vih~a~ 90 (281)
||||||||||++|+++|+++|++|+++.+.. .+|+++.+++.++++ ++|+|||+|+
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~~v~~~~~~~----------------------~~Dl~~~~~l~~~~~~~~~d~Vih~A~ 58 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGFTNLVLRTHK----------------------ELDLTRQADVEAFFAKEKPTYVILAAA 58 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCCcEEEeeccc----------------------cCCCCCHHHHHHHHhccCCCEEEEeee
Confidence 6999999999999999999999887664321 379999999998877 5799999998
Q ss_pred cCCC--CCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccC-Cchh
Q 023515 91 PFYH--DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQS-ELWY 167 (281)
Q Consensus 91 ~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~Y 167 (281)
.... .........++.|+.++.+++++|++. ++++||++||..+|. .. ...+++|+++... +..+ ..+|
T Consensus 59 ~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~i~~SS~~vyg-~~----~~~~~~E~~~~~~--~~~p~~~~Y 130 (306)
T PLN02725 59 KVGGIHANMTYPADFIRENLQIQTNVIDAAYRH-GVKKLLFLGSSCIYP-KF----APQPIPETALLTG--PPEPTNEWY 130 (306)
T ss_pred eecccchhhhCcHHHHHHHhHHHHHHHHHHHHc-CCCeEEEeCceeecC-CC----CCCCCCHHHhccC--CCCCCcchH
Confidence 7432 122233478899999999999999998 888999999987654 21 2345677653220 1112 2359
Q ss_pred hhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCC---CCccHHHHHH----HHhCCC--C-C--CCCCccceeHHH
Q 023515 168 PLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPT---LNTSAAAVLS----LIKGAQ--T-Y--PNVTFGWVNVKD 235 (281)
Q Consensus 168 ~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~---~~~~~~~~~~----~~~~~~--~-~--~~~~~~~i~~~D 235 (281)
+.+|.++|++++.+.+.++++++++||+.+|||..... .......+.. ...+.+ . + +.+.++|+|++|
T Consensus 131 ~~sK~~~e~~~~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D 210 (306)
T PLN02725 131 AIAKIAGIKMCQAYRIQYGWDAISGMPTNLYGPHDNFHPENSHVIPALIRRFHEAKANGAPEVVVWGSGSPLREFLHVDD 210 (306)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCCCCCCCcccHHHHHHHHHHhhcCCCeEEEcCCCCeeeccccHHH
Confidence 99999999999999888899999999999999974311 1122333332 223332 1 2 467889999999
Q ss_pred HHHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 236 VANAHIQAFEVPSANGRYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 236 ~a~~i~~~~~~~~~~g~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
++++++.++++....+.||++ +..+++.|+++.+.+.++.
T Consensus 211 v~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~ 251 (306)
T PLN02725 211 LADAVVFLMRRYSGAEHVNVGSGDEVTIKELAELVKEVVGF 251 (306)
T ss_pred HHHHHHHHHhccccCcceEeCCCCcccHHHHHHHHHHHhCC
Confidence 999999999876555688887 5789999999999998863
|
|
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=232.60 Aligned_cols=224 Identities=19% Similarity=0.133 Sum_probs=176.6
Q ss_pred eEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcC--CcEeEEe
Q 023515 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG--CDGVCHT 88 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~d~Vih~ 88 (281)
+|||||||||||++++++|+++|++|++++|. .+|+.+.+.+.+++++ +|+|||+
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~-----------------------~~d~~~~~~~~~~~~~~~~d~vi~~ 57 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSS-----------------------QLDLTDPEALERLLRAIRPDAVVNT 57 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc-----------------------ccCCCCHHHHHHHHHhCCCCEEEEC
Confidence 58999999999999999999999999999875 2688888899998885 4999999
Q ss_pred cccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchh
Q 023515 89 ASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWY 167 (281)
Q Consensus 89 a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y 167 (281)
|+..... .....+..+++|+.++.+++++|++. +. +||++||.++|.+ ....+++|+++..|. +.|
T Consensus 58 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~v~~Ss~~vy~~-----~~~~~~~E~~~~~~~------~~Y 124 (287)
T TIGR01214 58 AAYTDVDGAESDPEKAFAVNALAPQNLARAAARH-GA-RLVHISTDYVFDG-----EGKRPYREDDATNPL------NVY 124 (287)
T ss_pred CccccccccccCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEeeeeeecC-----CCCCCCCCCCCCCCc------chh
Confidence 9874332 12234477899999999999999987 54 8999999877642 123457777765543 569
Q ss_pred hhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCC--CCCCCCccceeHHHHHHHHHHhhc
Q 023515 168 PLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--TYPNVTFGWVNVKDVANAHIQAFE 245 (281)
Q Consensus 168 ~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~D~a~~i~~~~~ 245 (281)
+.+|.++|++++.+ +.+++++||+.+|||.... ......+..+..+.+ ..+++.++|+|++|+|+++..++.
T Consensus 125 ~~~K~~~E~~~~~~----~~~~~ilR~~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~ 198 (287)
T TIGR01214 125 GQSKLAGEQAIRAA----GPNALIVRTSWLYGGGGGR--NFVRTMLRLAGRGEELRVVDDQIGSPTYAKDLARVIAALLQ 198 (287)
T ss_pred hHHHHHHHHHHHHh----CCCeEEEEeeecccCCCCC--CHHHHHHHHhhcCCCceEecCCCcCCcCHHHHHHHHHHHHh
Confidence 99999999998764 6899999999999997421 222334444444442 346678899999999999999998
Q ss_pred CC-CCCccEEEe-cCCCCHHHHHHHHHHhCCCC
Q 023515 246 VP-SANGRYCLV-ERVSHYSEIVNIIRELYPAF 276 (281)
Q Consensus 246 ~~-~~~g~~~~~-~~~~t~~e~~~~i~~~~~~~ 276 (281)
++ ..+|+||++ ++.+++.|+++.+++.+|..
T Consensus 199 ~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~ 231 (287)
T TIGR01214 199 RLARARGVYHLANSGQCSWYEFAQAIFEEAGAD 231 (287)
T ss_pred hccCCCCeEEEECCCCcCHHHHHHHHHHHhCcc
Confidence 76 356799987 47899999999999998753
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-32 Score=236.43 Aligned_cols=238 Identities=20% Similarity=0.199 Sum_probs=201.7
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcC--C
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG--C 82 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~ 82 (281)
+.++|+||||||+|-||+++|+++++.+ .+++.++|++.+......+........++.++.||++|.+.+..++++ +
T Consensus 247 ~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kv 326 (588)
T COG1086 247 MLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKV 326 (588)
T ss_pred HcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCC
Confidence 4579999999999999999999999987 789999999877666666554432246899999999999999999997 9
Q ss_pred cEeEEeccc-CCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhc
Q 023515 83 DGVCHTASP-FYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCK 161 (281)
Q Consensus 83 d~Vih~a~~-~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 161 (281)
|+|||+||. --+..+.++.+.+++|+.||.|++++|.+. ++++||.+||--+..
T Consensus 327 d~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~-~V~~~V~iSTDKAV~------------------------ 381 (588)
T COG1086 327 DIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKN-GVKKFVLISTDKAVN------------------------ 381 (588)
T ss_pred ceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHh-CCCEEEEEecCcccC------------------------
Confidence 999999996 333446666799999999999999999998 999999999987765
Q ss_pred cCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHH-HHHHhCCC---CCCCCCccceeHH
Q 023515 162 QSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAV-LSLIKGAQ---TYPNVTFGWVNVK 234 (281)
Q Consensus 162 ~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~i~~~ 234 (281)
|.+.||+||+.+|.++.++++.. +.+++++|+|||.|.+ ++..-.+ +.+.+|.| ..++-+|-|+.+.
T Consensus 382 -PtNvmGaTKr~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSr-----GSViPlFk~QI~~GgplTvTdp~mtRyfMTI~ 455 (588)
T COG1086 382 -PTNVMGATKRLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSR-----GSVIPLFKKQIAEGGPLTVTDPDMTRFFMTIP 455 (588)
T ss_pred -CchHhhHHHHHHHHHHHHHhhccCCCCcEEEEEEecceecCC-----CCCHHHHHHHHHcCCCccccCCCceeEEEEHH
Confidence 34679999999999999997744 3899999999999977 3333444 44667765 3378889999999
Q ss_pred HHHHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCC
Q 023515 235 DVANAHIQAFEVPSANGRYCLV-ERVSHYSEIVNIIRELYP 274 (281)
Q Consensus 235 D~a~~i~~~~~~~~~~g~~~~~-~~~~t~~e~~~~i~~~~~ 274 (281)
|.++.++.+....+.+.+|.+- |++++..|+++.+.++.|
T Consensus 456 EAv~LVlqA~a~~~gGeifvldMGepvkI~dLAk~mi~l~g 496 (588)
T COG1086 456 EAVQLVLQAGAIAKGGEIFVLDMGEPVKIIDLAKAMIELAG 496 (588)
T ss_pred HHHHHHHHHHhhcCCCcEEEEcCCCCeEHHHHHHHHHHHhC
Confidence 9999999999988777799886 899999999999999987
|
|
| >KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=217.37 Aligned_cols=250 Identities=20% Similarity=0.273 Sum_probs=188.0
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcch-hhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKK-TRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
.+++|+||||.||||+|||+.|+.+||+|++++.-...... +..... ..+++.+.-|+..+ ++..+|-|+
T Consensus 26 ~~lrI~itGgaGFIgSHLvdkLm~egh~VIa~Dn~ftg~k~n~~~~~~----~~~fel~~hdv~~p-----l~~evD~Iy 96 (350)
T KOG1429|consen 26 QNLRILITGGAGFIGSHLVDKLMTEGHEVIALDNYFTGRKENLEHWIG----HPNFELIRHDVVEP-----LLKEVDQIY 96 (350)
T ss_pred CCcEEEEecCcchHHHHHHHHHHhcCCeEEEEecccccchhhcchhcc----CcceeEEEeechhH-----HHHHhhhhh
Confidence 46899999999999999999999999999999986543322 111111 13566666666543 777899999
Q ss_pred EecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCc
Q 023515 87 HTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL 165 (281)
Q Consensus 87 h~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 165 (281)
|+|++.++. ........+..|+.++.+++..|++. + ++|++.||+.+| |++ ..++..|+.+-. -.|..+.+
T Consensus 97 hLAapasp~~y~~npvktIktN~igtln~lglakrv-~-aR~l~aSTseVY-gdp----~~hpq~e~ywg~-vnpigpr~ 168 (350)
T KOG1429|consen 97 HLAAPASPPHYKYNPVKTIKTNVIGTLNMLGLAKRV-G-ARFLLASTSEVY-GDP----LVHPQVETYWGN-VNPIGPRS 168 (350)
T ss_pred hhccCCCCcccccCccceeeecchhhHHHHHHHHHh-C-ceEEEeeccccc-CCc----ccCCCccccccc-cCcCCchh
Confidence 999984432 22333488899999999999999997 5 799999997655 432 233333332211 11223456
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHH-HHHHHHhCCC--CC--CCCCccceeHHHHHHHH
Q 023515 166 WYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAA-AVLSLIKGAQ--TY--PNVTFGWVNVKDVANAH 240 (281)
Q Consensus 166 ~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~-~~~~~~~~~~--~~--~~~~~~~i~~~D~a~~i 240 (281)
.|...|..+|.++..+.++.|+.+.+.|+.++|||+++-....... ++...+++.+ .+ |.|+|+|.|++|+++.+
T Consensus 169 cydegKr~aE~L~~~y~k~~giE~rIaRifNtyGPrm~~~dgrvvsnf~~q~lr~epltv~g~G~qtRSF~yvsD~Vegl 248 (350)
T KOG1429|consen 169 CYDEGKRVAETLCYAYHKQEGIEVRIARIFNTYGPRMHMDDGRVVSNFIAQALRGEPLTVYGDGKQTRSFQYVSDLVEGL 248 (350)
T ss_pred hhhHHHHHHHHHHHHhhcccCcEEEEEeeecccCCccccCCChhhHHHHHHHhcCCCeEEEcCCcceEEEEeHHHHHHHH
Confidence 7999999999999999999999999999999999987644444434 3444566664 33 68999999999999999
Q ss_pred HHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 241 IQAFEVPSANGRYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 241 ~~~~~~~~~~g~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
+.+++++.. +-+|++ .+..|+.|+++.+.++.+.
T Consensus 249 l~Lm~s~~~-~pvNiGnp~e~Tm~elAemv~~~~~~ 283 (350)
T KOG1429|consen 249 LRLMESDYR-GPVNIGNPGEFTMLELAEMVKELIGP 283 (350)
T ss_pred HHHhcCCCc-CCcccCCccceeHHHHHHHHHHHcCC
Confidence 999997754 457877 4889999999999999854
|
|
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-32 Score=230.72 Aligned_cols=240 Identities=19% Similarity=0.184 Sum_probs=177.3
Q ss_pred EEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----CCcEeE
Q 023515 12 VCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----GCDGVC 86 (281)
Q Consensus 12 ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~d~Vi 86 (281)
|||||||||||+++++.|+++|+ +|++++|..... .+..+ ....+.+|+.+.+.++.+.+ ++|+||
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~~-~~~~~--------~~~~~~~d~~~~~~~~~~~~~~~~~~D~vv 71 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGH-KFLNL--------ADLVIADYIDKEDFLDRLEKGAFGKIEAIF 71 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCch-hhhhh--------hheeeeccCcchhHHHHHHhhccCCCCEEE
Confidence 69999999999999999999997 788887754322 11111 12356788888777777654 799999
Q ss_pred EecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCch
Q 023515 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (281)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 166 (281)
|+|+..... ..+.+..+++|+.++.+++++|.+. +. +|||+||.++|. .. ..+++|++++. .+.+.
T Consensus 72 h~A~~~~~~-~~~~~~~~~~n~~~~~~ll~~~~~~-~~-~~v~~SS~~vy~-~~-----~~~~~e~~~~~-----~p~~~ 137 (314)
T TIGR02197 72 HQGACSDTT-ETDGEYMMENNYQYSKRLLDWCAEK-GI-PFIYASSAATYG-DG-----EAGFREGRELE-----RPLNV 137 (314)
T ss_pred ECccccCcc-ccchHHHHHHHHHHHHHHHHHHHHh-CC-cEEEEccHHhcC-CC-----CCCcccccCcC-----CCCCH
Confidence 999974432 3344578899999999999999997 65 799999987654 21 12345554321 12356
Q ss_pred hhhhHHHHHHHHHHHHHh--cCCcEEEEcCCcccCCCCCCCC---CccHHHHHHHHhCCC--C--------CCCCCccce
Q 023515 167 YPLSKTLAEDAAWKFAKE--KSIDLVTINPAMVIGPLLQPTL---NTSAAAVLSLIKGAQ--T--------YPNVTFGWV 231 (281)
Q Consensus 167 Y~~sK~~~e~~~~~~~~~--~g~~~~~irp~~v~g~~~~~~~---~~~~~~~~~~~~~~~--~--------~~~~~~~~i 231 (281)
|+.+|..+|.+++++..+ .+++++++||+.+|||...... ......+..+..+.+ . .|++.++|+
T Consensus 138 Y~~sK~~~e~~~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i 217 (314)
T TIGR02197 138 YGYSKFLFDQYVRRRVLPEALSAQVVGLRYFNVYGPREYHKGKMASVAFHLFNQIKAGGNVKLFKSSEGFKDGEQLRDFV 217 (314)
T ss_pred HHHHHHHHHHHHHHHhHhhccCCceEEEEEeeccCCCCCCCCCcccHHHHHHHHHhcCCCeEEecCccccCCCCceeeeE
Confidence 999999999999875432 3679999999999999754321 112334445554441 1 246778999
Q ss_pred eHHHHHHHHHHhhcCCCCCccEEEec-CCCCHHHHHHHHHHhCCC
Q 023515 232 NVKDVANAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 232 ~~~D~a~~i~~~~~~~~~~g~~~~~~-~~~t~~e~~~~i~~~~~~ 275 (281)
|++|++++++.++.+ ...+.||+++ +++|+.|+++.+.+.+|.
T Consensus 218 ~v~D~a~~i~~~~~~-~~~~~yni~~~~~~s~~e~~~~i~~~~g~ 261 (314)
T TIGR02197 218 YVKDVVDVNLWLLEN-GVSGIFNLGTGRARSFNDLADAVFKALGK 261 (314)
T ss_pred EHHHHHHHHHHHHhc-ccCceEEcCCCCCccHHHHHHHHHHHhCC
Confidence 999999999999987 4567999974 789999999999999874
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=231.66 Aligned_cols=233 Identities=21% Similarity=0.192 Sum_probs=174.7
Q ss_pred EEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhhhhccCCCCcE----EEEEcCCCCcCcHHHHhc--CCcE
Q 023515 12 VCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERL----QLFKANLLEEGSFDSIVD--GCDG 84 (281)
Q Consensus 12 ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~----~~~~~D~~~~~~~~~~~~--~~d~ 84 (281)
||||||+|.||++||++|++.+ .++++++|++.+...+....+......++ .++.+|++|.+.+..+++ ++|+
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdi 80 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDI 80 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SE
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCE
Confidence 7999999999999999999987 78999999987666665554321111223 456899999999999999 9999
Q ss_pred eEEeccc-CCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccC
Q 023515 85 VCHTASP-FYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQS 163 (281)
Q Consensus 85 Vih~a~~-~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 163 (281)
|||.||. .-+..++.+.+++++|+.||.|++++|.++ ++++||++||--+.. |
T Consensus 81 VfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~-~v~~~v~ISTDKAv~-------------------------P 134 (293)
T PF02719_consen 81 VFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEH-GVERFVFISTDKAVN-------------------------P 134 (293)
T ss_dssp EEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHT-T-SEEEEEEECGCSS--------------------------
T ss_pred EEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEccccccCC-------------------------C
Confidence 9999996 222224455699999999999999999998 999999999977653 3
Q ss_pred CchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCC---CCCCCccceeHHHHH
Q 023515 164 ELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT---YPNVTFGWVNVKDVA 237 (281)
Q Consensus 164 ~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~D~a 237 (281)
.+.||+||+.+|.++..++... +.+++++|+|+|.|... .-++.+.+++.+|.|. .++.+|-|+.++|++
T Consensus 135 tnvmGatKrlaE~l~~~~~~~~~~~~t~f~~VRFGNVlgS~G----SVip~F~~Qi~~g~PlTvT~p~mtRffmti~EAv 210 (293)
T PF02719_consen 135 TNVMGATKRLAEKLVQAANQYSGNSDTKFSSVRFGNVLGSRG----SVIPLFKKQIKNGGPLTVTDPDMTRFFMTIEEAV 210 (293)
T ss_dssp -SHHHHHHHHHHHHHHHHCCTSSSS--EEEEEEE-EETTGTT----SCHHHHHHHHHTTSSEEECETT-EEEEE-HHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhhhCCCCCcEEEEEEecceecCCC----cHHHHHHHHHHcCCcceeCCCCcEEEEecHHHHH
Confidence 4679999999999999987655 67999999999998761 2244555667777753 368889999999999
Q ss_pred HHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCC
Q 023515 238 NAHIQAFEVPSANGRYCLV-ERVSHYSEIVNIIRELYP 274 (281)
Q Consensus 238 ~~i~~~~~~~~~~g~~~~~-~~~~t~~e~~~~i~~~~~ 274 (281)
+.++.++.....+++|.+- |+++++.|+++.+.+..|
T Consensus 211 ~Lvl~a~~~~~~geifvl~mg~~v~I~dlA~~~i~~~g 248 (293)
T PF02719_consen 211 QLVLQAAALAKGGEIFVLDMGEPVKILDLAEAMIELSG 248 (293)
T ss_dssp HHHHHHHHH--TTEEEEE---TCEECCCHHHHHHHHTT
T ss_pred HHHHHHHhhCCCCcEEEecCCCCcCHHHHHHHHHhhcc
Confidence 9999999887766688886 799999999999999887
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=228.77 Aligned_cols=218 Identities=17% Similarity=0.236 Sum_probs=169.2
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEec
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a 89 (281)
|+|+|||||||||++++++|+++||+|++++|+..+...+. ..+++++.+|++|++++..+++++|+|||++
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~--------~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~ 72 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLK--------EWGAELVYGDLSLPETLPPSFKGVTAIIDAS 72 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHh--------hcCCEEEECCCCCHHHHHHHHCCCCEEEECC
Confidence 47999999999999999999999999999999864432211 1368999999999999999999999999987
Q ss_pred ccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchhhh
Q 023515 90 SPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPL 169 (281)
Q Consensus 90 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~ 169 (281)
+... .+ .....++|+.++.+++++|++. ++++||++||.++... ...+|..
T Consensus 73 ~~~~---~~-~~~~~~~~~~~~~~l~~aa~~~-gvkr~I~~Ss~~~~~~------------------------~~~~~~~ 123 (317)
T CHL00194 73 TSRP---SD-LYNAKQIDWDGKLALIEAAKAA-KIKRFIFFSILNAEQY------------------------PYIPLMK 123 (317)
T ss_pred CCCC---CC-ccchhhhhHHHHHHHHHHHHHc-CCCEEEEecccccccc------------------------CCChHHH
Confidence 6422 12 2357788999999999999998 8999999999643210 0134889
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCC---CCCCccceeHHHHHHHHHHhhcC
Q 023515 170 SKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY---PNVTFGWVNVKDVANAHIQAFEV 246 (281)
Q Consensus 170 sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~D~a~~i~~~~~~ 246 (281)
+|..+|++++ +++++++++||+.+|+.... ........+.+.+ +.+.++|+|++|+|+++..++++
T Consensus 124 ~K~~~e~~l~----~~~l~~tilRp~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~l~~ 192 (317)
T CHL00194 124 LKSDIEQKLK----KSGIPYTIFRLAGFFQGLIS-------QYAIPILEKQPIWITNESTPISYIDTQDAAKFCLKSLSL 192 (317)
T ss_pred HHHHHHHHHH----HcCCCeEEEeecHHhhhhhh-------hhhhhhccCCceEecCCCCccCccCHHHHHHHHHHHhcC
Confidence 9999998874 46899999999988864211 1111122223221 46678999999999999999987
Q ss_pred CCC-CccEEEec-CCCCHHHHHHHHHHhCCC
Q 023515 247 PSA-NGRYCLVE-RVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 247 ~~~-~g~~~~~~-~~~t~~e~~~~i~~~~~~ 275 (281)
+.. +++||+++ +.+|+.|+++.+.+.+|.
T Consensus 193 ~~~~~~~~ni~g~~~~s~~el~~~~~~~~g~ 223 (317)
T CHL00194 193 PETKNKTFPLVGPKSWNSSEIISLCEQLSGQ 223 (317)
T ss_pred ccccCcEEEecCCCccCHHHHHHHHHHHhCC
Confidence 654 45899975 789999999999999875
|
|
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-31 Score=224.86 Aligned_cols=249 Identities=20% Similarity=0.233 Sum_probs=183.6
Q ss_pred eEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCc-chhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--CCcEeEE
Q 023515 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP-KKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVCH 87 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~Vih 87 (281)
+||||||||+||++++++|+++|++|++++|..... ..+.... . ..+++.+.+|+++.+++.++++ ++|+|||
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~D~~~~~~~~~~~~~~~~d~vv~ 76 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSPEALKRGE-R---ITRVTFVEGDLRDRELLDRLFEEHKIDAVIH 76 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccchhhhhhhc-c---ccceEEEECCCCCHHHHHHHHHhCCCcEEEE
Confidence 589999999999999999999999999887643321 1111110 0 0157788999999999998886 6999999
Q ss_pred ecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCch
Q 023515 88 TASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (281)
Q Consensus 88 ~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 166 (281)
+||..... ........++.|+.++.+++++|.+. ++++||++||...+. .. ...+++|+++..| .+.
T Consensus 77 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~ss~~~~g-~~----~~~~~~e~~~~~~------~~~ 144 (328)
T TIGR01179 77 FAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQT-GVKKFIFSSSAAVYG-EP----SSIPISEDSPLGP------INP 144 (328)
T ss_pred CccccCcchhhcCchhhhhhhHHHHHHHHHHHHhc-CCCEEEEecchhhcC-CC----CCCCccccCCCCC------CCc
Confidence 99864321 12233477899999999999999987 778999999976653 21 2234677766553 356
Q ss_pred hhhhHHHHHHHHHHHHHh-cCCcEEEEcCCcccCCCCCCCC-------CccHHHHHHHHhC-C-C----------CCCCC
Q 023515 167 YPLSKTLAEDAAWKFAKE-KSIDLVTINPAMVIGPLLQPTL-------NTSAAAVLSLIKG-A-Q----------TYPNV 226 (281)
Q Consensus 167 Y~~sK~~~e~~~~~~~~~-~g~~~~~irp~~v~g~~~~~~~-------~~~~~~~~~~~~~-~-~----------~~~~~ 226 (281)
|+.+|.++|.+++.++++ .+++++++||+.+|||...... ......+.....+ . + ..+.+
T Consensus 145 y~~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 224 (328)
T TIGR01179 145 YGRSKLMSERILRDLSKADPGLSYVILRYFNVAGADPEGTIGEDPPGITHLIPYACQVAVGKRDKLTIFGTDYPTPDGTC 224 (328)
T ss_pred hHHHHHHHHHHHHHHHHhccCCCEEEEecCcccCCCCCCccccCCcccchHHHHHHHHHHhCCCCeEEeCCcccCCCCce
Confidence 999999999999999877 7999999999999998643211 1111222222221 1 1 12356
Q ss_pred CccceeHHHHHHHHHHhhcCC---CCCccEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 227 TFGWVNVKDVANAHIQAFEVP---SANGRYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~---~~~g~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
.++|||++|++++++.++... ..++.||++ ++.+|+.|+++.+++.+|.
T Consensus 225 ~~~~v~~~D~a~~~~~~~~~~~~~~~~~~~n~~~~~~~s~~ei~~~~~~~~g~ 277 (328)
T TIGR01179 225 VRDYIHVMDLADAHLAALEYLLNGGESHVYNLGYGQGFSVLEVIEAFKKVSGV 277 (328)
T ss_pred EEeeeeHHHHHHHHHHHHhhhhcCCCcceEEcCCCCcccHHHHHHHHHHHhCC
Confidence 789999999999999998752 234589996 5789999999999999874
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=216.74 Aligned_cols=255 Identities=24% Similarity=0.298 Sum_probs=199.6
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEc-CCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--CCcEe
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVR-DPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGV 85 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~V 85 (281)
.++||||||+||||+|.+-+|+++||.|++++. .....+.+.+..........+.++++|+.|.+.++++++ ..|.|
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd~V 81 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFDAV 81 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCceE
Confidence 578999999999999999999999999999987 344455555555444445789999999999999999998 78999
Q ss_pred EEeccc--CCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccC
Q 023515 86 CHTASP--FYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQS 163 (281)
Q Consensus 86 ih~a~~--~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 163 (281)
+|.|+. .....+++ ..+...|+.|+.+|++.++++ +++.+||.||+.+|+ . +...+++|+.+.. . +
T Consensus 82 ~Hfa~~~~vgeS~~~p-~~Y~~nNi~gtlnlLe~~~~~-~~~~~V~sssatvYG-~----p~~ip~te~~~t~-~----p 149 (343)
T KOG1371|consen 82 MHFAALAAVGESMENP-LSYYHNNIAGTLNLLEVMKAH-NVKALVFSSSATVYG-L----PTKVPITEEDPTD-Q----P 149 (343)
T ss_pred EeehhhhccchhhhCc-hhheehhhhhHHHHHHHHHHc-CCceEEEecceeeec-C----cceeeccCcCCCC-C----C
Confidence 999986 33333444 488999999999999999999 799999999986664 3 2347888888766 1 2
Q ss_pred CchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccC--CCC----CCCC--CccHHHHHHHHhCC-C-----------CC
Q 023515 164 ELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIG--PLL----QPTL--NTSAAAVLSLIKGA-Q-----------TY 223 (281)
Q Consensus 164 ~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g--~~~----~~~~--~~~~~~~~~~~~~~-~-----------~~ 223 (281)
.++|+.+|.++|..++.+...++.+++.+|.++++| |.. .+.. +.+...+.....+. + ..
T Consensus 150 ~~pyg~tK~~iE~i~~d~~~~~~~~~~~LRyfn~~ga~p~Gr~ge~p~~~~nnl~p~v~~vaigr~~~l~v~g~d~~t~d 229 (343)
T KOG1371|consen 150 TNPYGKTKKAIEEIIHDYNKAYGWKVTGLRYFNVIGAHPSGRIGEAPLGIPNNLLPYVFQVAIGRRPNLQVVGRDYTTID 229 (343)
T ss_pred CCcchhhhHHHHHHHHhhhccccceEEEEEeccccCccccCccCCCCccCcccccccccchhhcccccceeecCcccccC
Confidence 467999999999999999988899999999999999 421 1110 00111222222222 1 12
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCCC---CccEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 224 PNVTFGWVNVKDVANAHIQAFEVPSA---NGRYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 224 ~~~~~~~i~~~D~a~~i~~~~~~~~~---~g~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
|...++++|+-|.|+..+.+++.... .++||++ +...+..++++.+.+..|.
T Consensus 230 gt~vrdyi~v~Dla~~h~~al~k~~~~~~~~i~Nlgtg~g~~V~~lv~a~~k~~g~ 285 (343)
T KOG1371|consen 230 GTIVRDYIHVLDLADGHVAALGKLRGAAEFGVYNLGTGKGSSVLELVTAFEKALGV 285 (343)
T ss_pred CCeeecceeeEehHHHHHHHhhccccchheeeEeecCCCCccHHHHHHHHHHHhcC
Confidence 57889999999999999999997654 3489987 6788999999999998863
|
|
| >KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=219.37 Aligned_cols=254 Identities=24% Similarity=0.304 Sum_probs=187.7
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~ 84 (281)
.++.+++||||+||+|++|+++|++++ .+|++++..+............ ....++++++|+.|...+..+++++ .
T Consensus 2 ~~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~--~~~~v~~~~~D~~~~~~i~~a~~~~-~ 78 (361)
T KOG1430|consen 2 EKKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGF--RSGRVTVILGDLLDANSISNAFQGA-V 78 (361)
T ss_pred CcCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcc--cCCceeEEecchhhhhhhhhhccCc-e
Confidence 347899999999999999999999998 8999999887532222221111 2367999999999999999999999 8
Q ss_pred eEEeccc-CCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccC
Q 023515 85 VCHTASP-FYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQS 163 (281)
Q Consensus 85 Vih~a~~-~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 163 (281)
|+|+|+. .+.......+...++|+.||.+++++|.+. +++++||+||.+++++... ...-+|+.+ .|. ..
T Consensus 79 Vvh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~-~v~~lIYtSs~~Vvf~g~~----~~n~~E~~p-~p~---~~ 149 (361)
T KOG1430|consen 79 VVHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKEL-GVKRLIYTSSAYVVFGGEP----IINGDESLP-YPL---KH 149 (361)
T ss_pred EEEeccccCccccccchhhheeecchhHHHHHHHHHHh-CCCEEEEecCceEEeCCee----cccCCCCCC-Ccc---cc
Confidence 8888775 333334345689999999999999999998 9999999999999874321 112233333 221 12
Q ss_pred CchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCC----CCCCCCccceeHHHHHHH
Q 023515 164 ELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ----TYPNVTFGWVNVKDVANA 239 (281)
Q Consensus 164 ~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~D~a~~ 239 (281)
.+.|+.||..+|+++++.+...++..+++||..||||+..... .....-+..|.. ..++.+.+|++++.++.+
T Consensus 150 ~d~Y~~sKa~aE~~Vl~an~~~~l~T~aLR~~~IYGpgd~~~~---~~i~~~~~~g~~~f~~g~~~~~~~~~~~~Nva~a 226 (361)
T KOG1430|consen 150 IDPYGESKALAEKLVLEANGSDDLYTCALRPPGIYGPGDKRLL---PKIVEALKNGGFLFKIGDGENLNDFTYGENVAWA 226 (361)
T ss_pred ccccchHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCcccc---HHHHHHHHccCceEEeeccccccceEEechhHHH
Confidence 3569999999999999987656799999999999999965433 233333344441 124678899999999999
Q ss_pred HHHhhcC-----CCCCc-cEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 240 HIQAFEV-----PSANG-RYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 240 i~~~~~~-----~~~~g-~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
.+.+... +...| .|++. +.+....++...+.+.+|.
T Consensus 227 hilA~~aL~~~~~~~~Gq~yfI~d~~p~~~~~~~~~l~~~lg~ 269 (361)
T KOG1430|consen 227 HILAARALLDKSPSVNGQFYFITDDTPVRFFDFLSPLVKALGY 269 (361)
T ss_pred HHHHHHHHHhcCCccCceEEEEeCCCcchhhHHHHHHHHhcCC
Confidence 8876542 33456 67776 5677666666688888764
|
|
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=211.96 Aligned_cols=220 Identities=19% Similarity=0.139 Sum_probs=182.2
Q ss_pred eEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--CCcEeEEe
Q 023515 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVCHT 88 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~Vih~ 88 (281)
+|||||++|.+|++|++.|. .+++|+.++|.. .|++|++.+.++++ ++|+|||+
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~-----------------------~Ditd~~~v~~~i~~~~PDvVIn~ 57 (281)
T COG1091 2 KILITGANGQLGTELRRALP-GEFEVIATDRAE-----------------------LDITDPDAVLEVIRETRPDVVINA 57 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC-CCceEEeccCcc-----------------------ccccChHHHHHHHHhhCCCEEEEC
Confidence 49999999999999999998 669999998764 58999999999998 68999999
Q ss_pred cccCCC-CCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchh
Q 023515 89 ASPFYH-DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWY 167 (281)
Q Consensus 89 a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y 167 (281)
|++..- ..+.+.+..+.+|..|+.+++++|.+. +. ++||+||-+++.|. ...+..|++.+.|. +.|
T Consensus 58 AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~-ga-~lVhiSTDyVFDG~-----~~~~Y~E~D~~~P~------nvY 124 (281)
T COG1091 58 AAYTAVDKAESEPELAFAVNATGAENLARAAAEV-GA-RLVHISTDYVFDGE-----KGGPYKETDTPNPL------NVY 124 (281)
T ss_pred ccccccccccCCHHHHHHhHHHHHHHHHHHHHHh-CC-eEEEeecceEecCC-----CCCCCCCCCCCCCh------hhh
Confidence 998443 344555689999999999999999998 65 79999999998743 24567888888865 679
Q ss_pred hhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC--CCCCCCCccceeHHHHHHHHHHhhc
Q 023515 168 PLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA--QTYPNVTFGWVNVKDVANAHIQAFE 245 (281)
Q Consensus 168 ~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~D~a~~i~~~~~ 245 (281)
|.||+++|..+++. +-+..++|.+.+||... .++...+++....+. ....+|...+++.+|+|+++..++.
T Consensus 125 G~sKl~GE~~v~~~----~~~~~I~Rtswv~g~~g---~nFv~tml~la~~~~~l~vv~Dq~gsPt~~~dlA~~i~~ll~ 197 (281)
T COG1091 125 GRSKLAGEEAVRAA----GPRHLILRTSWVYGEYG---NNFVKTMLRLAKEGKELKVVDDQYGSPTYTEDLADAILELLE 197 (281)
T ss_pred hHHHHHHHHHHHHh----CCCEEEEEeeeeecCCC---CCHHHHHHHHhhcCCceEEECCeeeCCccHHHHHHHHHHHHh
Confidence 99999999999664 68899999999999764 233334444444554 3446888889999999999999999
Q ss_pred CCCCCccEEEec-CCCCHHHHHHHHHHhCC
Q 023515 246 VPSANGRYCLVE-RVSHYSEIVNIIRELYP 274 (281)
Q Consensus 246 ~~~~~g~~~~~~-~~~t~~e~~~~i~~~~~ 274 (281)
.....|+|++++ +.+||.|+++.|.+.++
T Consensus 198 ~~~~~~~yH~~~~g~~Swydfa~~I~~~~~ 227 (281)
T COG1091 198 KEKEGGVYHLVNSGECSWYEFAKAIFEEAG 227 (281)
T ss_pred ccccCcEEEEeCCCcccHHHHHHHHHHHhC
Confidence 888888999986 56799999999999875
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-30 Score=222.63 Aligned_cols=253 Identities=21% Similarity=0.252 Sum_probs=178.6
Q ss_pred eEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCCcchhhhh---hhcc-----CCC-CcEEEEEcCCCCc------C
Q 023515 11 VVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHL---LALD-----GAS-ERLQLFKANLLEE------G 73 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~---~~~~-----~~~-~~~~~~~~D~~~~------~ 73 (281)
+|||||||||||++++++|+++| ++|++++|+.......+++ .... ... .+++++.+|++++ +
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~ 80 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA 80 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence 58999999999999999999998 6799999987543222111 1100 001 4789999999865 3
Q ss_pred cHHHHhcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCC
Q 023515 74 SFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (281)
Q Consensus 74 ~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~ 153 (281)
.+..+.+++|+|||+|+.... ..+++...++|+.++.+++++|.+. +.++|+++||.+++..... ....|+.
T Consensus 81 ~~~~~~~~~d~vih~a~~~~~--~~~~~~~~~~nv~g~~~ll~~a~~~-~~~~~v~iSS~~v~~~~~~-----~~~~~~~ 152 (367)
T TIGR01746 81 EWERLAENVDTIVHNGALVNW--VYPYSELRAANVLGTREVLRLAASG-RAKPLHYVSTISVLAAIDL-----STVTEDD 152 (367)
T ss_pred HHHHHHhhCCEEEeCCcEecc--CCcHHHHhhhhhHHHHHHHHHHhhC-CCceEEEEccccccCCcCC-----CCccccc
Confidence 466667799999999997543 2345578889999999999999997 7788999999977652211 1123332
Q ss_pred CCChhhhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCc---cHHHHHHHHh-CC-CCCCCCCc
Q 023515 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNT---SAAAVLSLIK-GA-QTYPNVTF 228 (281)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~---~~~~~~~~~~-~~-~~~~~~~~ 228 (281)
...+. .....+.|+.+|+++|.+++.+.+. |++++++|||.++|+........ ....+..... +. +.......
T Consensus 153 ~~~~~-~~~~~~~Y~~sK~~~E~~~~~~~~~-g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 230 (367)
T TIGR01746 153 AIVTP-PPGLAGGYAQSKWVAELLVREASDR-GLPVTIVRPGRILGNSYTGAINSSDILWRMVKGCLALGAYPDSPELTE 230 (367)
T ss_pred ccccc-ccccCCChHHHHHHHHHHHHHHHhc-CCCEEEECCCceeecCCCCCCCchhHHHHHHHHHHHhCCCCCCCcccc
Confidence 22111 0112356999999999999887654 99999999999999743322221 1122222222 22 22223467
Q ss_pred cceeHHHHHHHHHHhhcCCCC---CccEEEec-CCCCHHHHHHHHHHhCC
Q 023515 229 GWVNVKDVANAHIQAFEVPSA---NGRYCLVE-RVSHYSEIVNIIRELYP 274 (281)
Q Consensus 229 ~~i~~~D~a~~i~~~~~~~~~---~g~~~~~~-~~~t~~e~~~~i~~~~~ 274 (281)
+|+|++|++++++.++.++.. +++||+++ +.+++.|+++.+.+ .|
T Consensus 231 ~~~~vddva~ai~~~~~~~~~~~~~~~~~v~~~~~~s~~e~~~~i~~-~g 279 (367)
T TIGR01746 231 DLTPVDYVARAIVALSSQPAASAGGPVFHVVNPEPVSLDEFLEWLER-AG 279 (367)
T ss_pred CcccHHHHHHHHHHHHhCCCcccCCceEEecCCCCCCHHHHHHHHHH-cC
Confidence 899999999999999887654 45899875 88999999999998 54
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-30 Score=239.34 Aligned_cols=250 Identities=22% Similarity=0.203 Sum_probs=178.1
Q ss_pred CeEEEeCCchHHHHHHHHHHH--HCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcC------cHHHHhcC
Q 023515 10 KVVCVTGASGYIASWLVKLLL--SRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEG------SFDSIVDG 81 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~--~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------~~~~~~~~ 81 (281)
|+|||||||||||++|+++|+ .+|++|++++|+... ..+..+.... ...+++++.+|++|++ .++.+ ++
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~-~~~~~~~~~~-~~~~v~~~~~Dl~~~~~~~~~~~~~~l-~~ 77 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSL-SRLEALAAYW-GADRVVPLVGDLTEPGLGLSEADIAEL-GD 77 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcchH-HHHHHHHHhc-CCCcEEEEecccCCccCCcCHHHHHHh-cC
Confidence 479999999999999999999 478999999996432 2222221111 1146899999999853 34444 89
Q ss_pred CcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhc
Q 023515 82 CDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCK 161 (281)
Q Consensus 82 ~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 161 (281)
+|+|||+||..... .......++|+.++.+++++|.+. ++++|||+||..++... ....+|++...+.
T Consensus 78 ~D~Vih~Aa~~~~~--~~~~~~~~~nv~gt~~ll~~a~~~-~~~~~v~~SS~~v~g~~------~~~~~e~~~~~~~--- 145 (657)
T PRK07201 78 IDHVVHLAAIYDLT--ADEEAQRAANVDGTRNVVELAERL-QAATFHHVSSIAVAGDY------EGVFREDDFDEGQ--- 145 (657)
T ss_pred CCEEEECceeecCC--CCHHHHHHHHhHHHHHHHHHHHhc-CCCeEEEEeccccccCc------cCccccccchhhc---
Confidence 99999999975432 233477899999999999999997 78999999998776421 1123444332221
Q ss_pred cCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCc------cHHHHHHHHhCC---CCC--CCCCccc
Q 023515 162 QSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNT------SAAAVLSLIKGA---QTY--PNVTFGW 230 (281)
Q Consensus 162 ~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~------~~~~~~~~~~~~---~~~--~~~~~~~ 230 (281)
...++|+.+|.++|+++++ ..+++++++||+.+|||........ ....+....... +.. +.+.+++
T Consensus 146 ~~~~~Y~~sK~~~E~~~~~---~~g~~~~ilRp~~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (657)
T PRK07201 146 GLPTPYHRTKFEAEKLVRE---ECGLPWRVYRPAVVVGDSRTGEMDKIDGPYYFFKVLAKLAKLPSWLPMVGPDGGRTNI 222 (657)
T ss_pred CCCCchHHHHHHHHHHHHH---cCCCcEEEEcCCeeeecCCCCccccCCcHHHHHHHHHHhccCCcccccccCCCCeeee
Confidence 1235699999999999864 3589999999999999864322111 111222221111 111 3456799
Q ss_pred eeHHHHHHHHHHhhcCCCCC-ccEEEec-CCCCHHHHHHHHHHhCCCCC
Q 023515 231 VNVKDVANAHIQAFEVPSAN-GRYCLVE-RVSHYSEIVNIIRELYPAFQ 277 (281)
Q Consensus 231 i~~~D~a~~i~~~~~~~~~~-g~~~~~~-~~~t~~e~~~~i~~~~~~~~ 277 (281)
+|++|+++++..++..+... ++||+++ +++++.|+++.+.+.+|...
T Consensus 223 v~vddva~ai~~~~~~~~~~g~~~ni~~~~~~s~~el~~~i~~~~g~~~ 271 (657)
T PRK07201 223 VPVDYVADALDHLMHKDGRDGQTFHLTDPKPQRVGDIYNAFARAAGAPP 271 (657)
T ss_pred eeHHHHHHHHHHHhcCcCCCCCEEEeCCCCCCcHHHHHHHHHHHhCCCc
Confidence 99999999999998865544 4899975 79999999999999987543
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-30 Score=223.13 Aligned_cols=228 Identities=16% Similarity=0.144 Sum_probs=172.1
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----CCc
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----GCD 83 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~d 83 (281)
++++|+||||||+||++++++|+++|++|++++|+..+...............+++++++|++|++.+..+++ ++|
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~~~D 138 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGDPVD 138 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCCCCc
Confidence 4789999999999999999999999999999999865432100000000011368999999999999999988 599
Q ss_pred EeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccC
Q 023515 84 GVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQS 163 (281)
Q Consensus 84 ~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 163 (281)
+||||++..... .....++|+.++.+++++|++. ++++||++||.+++. +
T Consensus 139 ~Vi~~aa~~~~~----~~~~~~vn~~~~~~ll~aa~~~-gv~r~V~iSS~~v~~-------------------------p 188 (390)
T PLN02657 139 VVVSCLASRTGG----VKDSWKIDYQATKNSLDAGREV-GAKHFVLLSAICVQK-------------------------P 188 (390)
T ss_pred EEEECCccCCCC----CccchhhHHHHHHHHHHHHHHc-CCCEEEEEeeccccC-------------------------c
Confidence 999998753321 1245678999999999999998 889999999976532 0
Q ss_pred CchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCC--CCC--CCCc-cceeHHHHHH
Q 023515 164 ELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--TYP--NVTF-GWVNVKDVAN 238 (281)
Q Consensus 164 ~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~-~~i~~~D~a~ 238 (281)
...|..+|...|..++. ...+++++++||+.+|++.. ..+..+..+.+ .+| +..+ .+||++|+|+
T Consensus 189 ~~~~~~sK~~~E~~l~~--~~~gl~~tIlRp~~~~~~~~--------~~~~~~~~g~~~~~~GdG~~~~~~~I~v~DlA~ 258 (390)
T PLN02657 189 LLEFQRAKLKFEAELQA--LDSDFTYSIVRPTAFFKSLG--------GQVEIVKDGGPYVMFGDGKLCACKPISEADLAS 258 (390)
T ss_pred chHHHHHHHHHHHHHHh--ccCCCCEEEEccHHHhcccH--------HHHHhhccCCceEEecCCcccccCceeHHHHHH
Confidence 12388999999998865 34799999999999997431 22333444543 234 3333 5799999999
Q ss_pred HHHHhhcCCCC-CccEEEec--CCCCHHHHHHHHHHhCCC
Q 023515 239 AHIQAFEVPSA-NGRYCLVE--RVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 239 ~i~~~~~~~~~-~g~~~~~~--~~~t~~e~~~~i~~~~~~ 275 (281)
+++.++.++.. +.+|++++ +.+|++|+++.+.+.+|.
T Consensus 259 ~i~~~~~~~~~~~~~~~Iggp~~~~S~~Eia~~l~~~lG~ 298 (390)
T PLN02657 259 FIADCVLDESKINKVLPIGGPGKALTPLEQGEMLFRILGK 298 (390)
T ss_pred HHHHHHhCccccCCEEEcCCCCcccCHHHHHHHHHHHhCC
Confidence 99999976543 45899875 489999999999999885
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-30 Score=217.14 Aligned_cols=234 Identities=18% Similarity=0.197 Sum_probs=163.6
Q ss_pred EEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEeccc
Q 023515 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTASP 91 (281)
Q Consensus 12 ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a~~ 91 (281)
|||||||||||++++++|+++|++|++++|++.+...... ..+ .|+.. ..+...++++|+|||+|+.
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~--------~~~----~~~~~-~~~~~~~~~~D~Vvh~a~~ 67 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKW--------EGY----KPWAP-LAESEALEGADAVINLAGE 67 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccc--------eee----ecccc-cchhhhcCCCCEEEECCCC
Confidence 6999999999999999999999999999998765433110 011 12222 4455667799999999986
Q ss_pred CCC--CC-CCccchhhhhHHHHHHHHHHHhhhCCCcc--EEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCch
Q 023515 92 FYH--DA-KDPQVELLDPAVKGTLNVLNSCAKFPSIK--RVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (281)
Q Consensus 92 ~~~--~~-~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 166 (281)
... .+ .+....++++|+.++.+++++|++. +.+ .||+.||... ++.. ...+++|+.++.+. +.
T Consensus 68 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~~~i~~S~~~~-yg~~----~~~~~~E~~~~~~~------~~ 135 (292)
T TIGR01777 68 PIADKRWTEERKQEIRDSRIDTTRALVEAIAAA-EQKPKVFISASAVGY-YGTS----EDRVFTEEDSPAGD------DF 135 (292)
T ss_pred CcccccCCHHHHHHHHhcccHHHHHHHHHHHhc-CCCceEEEEeeeEEE-eCCC----CCCCcCcccCCCCC------Ch
Confidence 432 11 1223467889999999999999997 553 4555565444 4321 23356777643322 33
Q ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHH--HhCC-CCCCCCCccceeHHHHHHHHHHh
Q 023515 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSL--IKGA-QTYPNVTFGWVNVKDVANAHIQA 243 (281)
Q Consensus 167 Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~i~~~D~a~~i~~~ 243 (281)
|+..+...|..+..+ ++.+++++++||+.+|||... . ....+... ..+. ...+++.++|+|++|+|+++..+
T Consensus 136 ~~~~~~~~e~~~~~~-~~~~~~~~ilR~~~v~G~~~~-~---~~~~~~~~~~~~~~~~g~~~~~~~~i~v~Dva~~i~~~ 210 (292)
T TIGR01777 136 LAELCRDWEEAAQAA-EDLGTRVVLLRTGIVLGPKGG-A---LAKMLPPFRLGLGGPLGSGRQWFSWIHIEDLVQLILFA 210 (292)
T ss_pred HHHHHHHHHHHhhhc-hhcCCceEEEeeeeEECCCcc-h---hHHHHHHHhcCcccccCCCCcccccEeHHHHHHHHHHH
Confidence 666677777766544 446899999999999998632 1 11111111 1111 22357889999999999999999
Q ss_pred hcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 244 FEVPSANGRYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 244 ~~~~~~~g~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
++++...|.||++ ++.+|+.|+++.|++.++.
T Consensus 211 l~~~~~~g~~~~~~~~~~s~~di~~~i~~~~g~ 243 (292)
T TIGR01777 211 LENASISGPVNATAPEPVRNKEFAKALARALHR 243 (292)
T ss_pred hcCcccCCceEecCCCccCHHHHHHHHHHHhCC
Confidence 9987667899987 4889999999999999874
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-31 Score=224.11 Aligned_cols=223 Identities=21% Similarity=0.199 Sum_probs=161.2
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--CCcEeEE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVCH 87 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~Vih 87 (281)
||||||||+|+||++|+++|.++|++|+.+.|. ..|++|.+.+.++++ ++|+|||
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~-----------------------~~dl~d~~~~~~~~~~~~pd~Vin 57 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRS-----------------------DLDLTDPEAVAKLLEAFKPDVVIN 57 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTT-----------------------CS-TTSHHHHHHHHHHH--SEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCch-----------------------hcCCCCHHHHHHHHHHhCCCeEec
Confidence 589999999999999999999999999999766 258889888888887 6899999
Q ss_pred ecccCCC-CCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCch
Q 023515 88 TASPFYH-DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (281)
Q Consensus 88 ~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 166 (281)
+||.... ..+...+...++|+.++.+|+++|.+. +. ++||+||..+|.|. ...+.+|++++.|. +.
T Consensus 58 ~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~-~~-~li~~STd~VFdG~-----~~~~y~E~d~~~P~------~~ 124 (286)
T PF04321_consen 58 CAAYTNVDACEKNPEEAYAINVDATKNLAEACKER-GA-RLIHISTDYVFDGD-----KGGPYTEDDPPNPL------NV 124 (286)
T ss_dssp ------HHHHHHSHHHHHHHHTHHHHHHHHHHHHC-T--EEEEEEEGGGS-SS-----TSSSB-TTS----S------SH
T ss_pred cceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHc-CC-cEEEeeccEEEcCC-----cccccccCCCCCCC------CH
Confidence 9987432 123345589999999999999999997 64 89999999888643 34457888887764 67
Q ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC--CCCCCCCccceeHHHHHHHHHHhh
Q 023515 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA--QTYPNVTFGWVNVKDVANAHIQAF 244 (281)
Q Consensus 167 Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~D~a~~i~~~~ 244 (281)
||.+|..+|+.+++. .-+..++|++.+||+... +.....+.....+. ....++.+.+++++|+|+++..++
T Consensus 125 YG~~K~~~E~~v~~~----~~~~~IlR~~~~~g~~~~---~~~~~~~~~~~~~~~i~~~~d~~~~p~~~~dlA~~i~~l~ 197 (286)
T PF04321_consen 125 YGRSKLEGEQAVRAA----CPNALILRTSWVYGPSGR---NFLRWLLRRLRQGEPIKLFDDQYRSPTYVDDLARVILELI 197 (286)
T ss_dssp HHHHHHHHHHHHHHH-----SSEEEEEE-SEESSSSS---SHHHHHHHHHHCTSEEEEESSCEE--EEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh----cCCEEEEecceecccCCC---chhhhHHHHHhcCCeeEeeCCceeCCEEHHHHHHHHHHHH
Confidence 999999999999774 248999999999998321 23334444454554 344678889999999999999999
Q ss_pred cCCCC----CccEEEec-CCCCHHHHHHHHHHhCCC
Q 023515 245 EVPSA----NGRYCLVE-RVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 245 ~~~~~----~g~~~~~~-~~~t~~e~~~~i~~~~~~ 275 (281)
++... .|+||+++ +.+|+.|+++.+.+.++.
T Consensus 198 ~~~~~~~~~~Giyh~~~~~~~S~~e~~~~i~~~~~~ 233 (286)
T PF04321_consen 198 EKNLSGASPWGIYHLSGPERVSRYEFAEAIAKILGL 233 (286)
T ss_dssp HHHHH-GGG-EEEE---BS-EEHHHHHHHHHHHHTH
T ss_pred HhcccccccceeEEEecCcccCHHHHHHHHHHHhCC
Confidence 87543 68999985 789999999999998763
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-29 Score=211.18 Aligned_cols=231 Identities=16% Similarity=0.204 Sum_probs=159.9
Q ss_pred CcchhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc
Q 023515 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (281)
Q Consensus 1 ~~~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 80 (281)
||+.+.-+.|+||||||+||||++|+++|+++|++|+...+ |+.+.+.+...++
T Consensus 1 ~~~~~~~~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~~--------------------------~~~~~~~v~~~l~ 54 (298)
T PLN02778 1 SNGTAGSATLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGSG--------------------------RLENRASLEADID 54 (298)
T ss_pred CCCCCCCCCCeEEEECCCCHHHHHHHHHHHhCCCEEEEecC--------------------------ccCCHHHHHHHHH
Confidence 34433344678999999999999999999999999875321 2233333444444
Q ss_pred --CCcEeEEecccCCCC----CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCC-CCCCCCeeeecCC
Q 023515 81 --GCDGVCHTASPFYHD----AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTG-KPRTPDVVVDETW 153 (281)
Q Consensus 81 --~~d~Vih~a~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~-~~~~~~~~~~e~~ 153 (281)
++|+|||+||..... .......++++|+.++.+++++|++. +++ ++++||..+|.+.. .+.....+++|++
T Consensus 55 ~~~~D~ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~-gv~-~v~~sS~~vy~~~~~~p~~~~~~~~Ee~ 132 (298)
T PLN02778 55 AVKPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRER-GLV-LTNYATGCIFEYDDAHPLGSGIGFKEED 132 (298)
T ss_pred hcCCCEEEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCC-EEEEecceEeCCCCCCCcccCCCCCcCC
Confidence 689999999975421 12234588999999999999999998 775 56667655553221 1111122466665
Q ss_pred CCChhhhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeH
Q 023515 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNV 233 (281)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 233 (281)
++.+ +.+.|+.+|.++|.+++.++ +..++|++..+++... ....++..+..+.+... ...+|+|+
T Consensus 133 ~p~~-----~~s~Yg~sK~~~E~~~~~y~-----~~~~lr~~~~~~~~~~----~~~~fi~~~~~~~~~~~-~~~s~~yv 197 (298)
T PLN02778 133 TPNF-----TGSFYSKTKAMVEELLKNYE-----NVCTLRVRMPISSDLS----NPRNFITKITRYEKVVN-IPNSMTIL 197 (298)
T ss_pred CCCC-----CCCchHHHHHHHHHHHHHhh-----ccEEeeecccCCcccc----cHHHHHHHHHcCCCeeE-cCCCCEEH
Confidence 5432 23579999999999998774 3467788777765421 11234555655543211 12479999
Q ss_pred HHHHHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 234 KDVANAHIQAFEVPSANGRYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 234 ~D~a~~i~~~~~~~~~~g~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
+|++++++.+++++. .|.||++ ++.+|+.|+++.+++.++.
T Consensus 198 ~D~v~al~~~l~~~~-~g~yNigs~~~iS~~el~~~i~~~~~~ 239 (298)
T PLN02778 198 DELLPISIEMAKRNL-TGIYNFTNPGVVSHNEILEMYRDYIDP 239 (298)
T ss_pred HHHHHHHHHHHhCCC-CCeEEeCCCCcccHHHHHHHHHHHhCC
Confidence 999999999997654 4799986 5789999999999999874
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.3e-29 Score=197.03 Aligned_cols=241 Identities=17% Similarity=0.202 Sum_probs=167.5
Q ss_pred EEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-CCcEeEEecc
Q 023515 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-GCDGVCHTAS 90 (281)
Q Consensus 12 ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-~~d~Vih~a~ 90 (281)
|+|||||||||++|+..|.+.||+|+++.|++.+....... .+ ...+.+.+... ++|+|||+||
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~--------~v-------~~~~~~~~~~~~~~DavINLAG 65 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQNLHP--------NV-------TLWEGLADALTLGIDAVINLAG 65 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCCeEEEEEcCCcchhhhcCc--------cc-------cccchhhhcccCCCCEEEECCC
Confidence 68999999999999999999999999999998765441110 11 12244555555 7999999999
Q ss_pred c--CCCCCC-CccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchh
Q 023515 91 P--FYHDAK-DPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWY 167 (281)
Q Consensus 91 ~--~~~~~~-~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y 167 (281)
. ....|. +..+...+..+..|..|.++..+.....++..-+|+-+|||. .....++|++++..+. -
T Consensus 66 ~~I~~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaSAvGyYG~----~~~~~~tE~~~~g~~F-------l 134 (297)
T COG1090 66 EPIAERRWTEKQKEEIRQSRINTTEKLVELIAASETKPKVLISASAVGYYGH----SGDRVVTEESPPGDDF-------L 134 (297)
T ss_pred CccccccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCCcEEEecceEEEecC----CCceeeecCCCCCCCh-------H
Confidence 6 222233 334578888999999999999965233344444555567754 3567788886655331 1
Q ss_pred hhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCC
Q 023515 168 PLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP 247 (281)
Q Consensus 168 ~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~ 247 (281)
+..=..=|...... +..|.+++.+|.|.|.++... ........++..+.|.-..|.|+++|||+||++++|.+++++.
T Consensus 135 a~lc~~WE~~a~~a-~~~gtRvvllRtGvVLs~~GG-aL~~m~~~fk~glGG~~GsGrQ~~SWIhieD~v~~I~fll~~~ 212 (297)
T COG1090 135 AQLCQDWEEEALQA-QQLGTRVVLLRTGVVLSPDGG-ALGKMLPLFKLGLGGKLGSGRQWFSWIHIEDLVNAILFLLENE 212 (297)
T ss_pred HHHHHHHHHHHhhh-hhcCceEEEEEEEEEecCCCc-chhhhcchhhhccCCccCCCCceeeeeeHHHHHHHHHHHHhCc
Confidence 11111112222222 345999999999999997522 1111112222223333455799999999999999999999999
Q ss_pred CCCccEEEe-cCCCCHHHHHHHHHHhCCC---CCCCC
Q 023515 248 SANGRYCLV-ERVSHYSEIVNIIRELYPA---FQLPE 280 (281)
Q Consensus 248 ~~~g~~~~~-~~~~t~~e~~~~i~~~~~~---~~~p~ 280 (281)
...|.||++ ..+++..++.+++.+.+.. .++|+
T Consensus 213 ~lsGp~N~taP~PV~~~~F~~al~r~l~RP~~~~vP~ 249 (297)
T COG1090 213 QLSGPFNLTAPNPVRNKEFAHALGRALHRPAILPVPS 249 (297)
T ss_pred CCCCcccccCCCcCcHHHHHHHHHHHhCCCccccCcH
Confidence 999999997 5999999999999999874 36664
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=214.92 Aligned_cols=228 Identities=16% Similarity=0.151 Sum_probs=167.3
Q ss_pred CCCeEEEe----CCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhh--hhc-cCCCCcEEEEEcCCCCcCcHHHHh-
Q 023515 8 AGKVVCVT----GASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHL--LAL-DGASERLQLFKANLLEEGSFDSIV- 79 (281)
Q Consensus 8 ~~~~ilIt----GatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~--~~~-~~~~~~~~~~~~D~~~~~~~~~~~- 79 (281)
++++|||| |||||||++|+++|+++||+|++++|+......+... ... .....+++++++|+.| +.+++
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d---~~~~~~ 127 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPAD---VKSKVA 127 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHH---HHhhhc
Confidence 46789999 9999999999999999999999999987543221110 000 0001358899999987 44444
Q ss_pred -cCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChh
Q 023515 80 -DGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPE 158 (281)
Q Consensus 80 -~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~ 158 (281)
.++|+|||+++. ++.++.+++++|++. ++++|||+||.++|... ...+..|+++..|
T Consensus 128 ~~~~d~Vi~~~~~---------------~~~~~~~ll~aa~~~-gvkr~V~~SS~~vyg~~-----~~~p~~E~~~~~p- 185 (378)
T PLN00016 128 GAGFDVVYDNNGK---------------DLDEVEPVADWAKSP-GLKQFLFCSSAGVYKKS-----DEPPHVEGDAVKP- 185 (378)
T ss_pred cCCccEEEeCCCC---------------CHHHHHHHHHHHHHc-CCCEEEEEccHhhcCCC-----CCCCCCCCCcCCC-
Confidence 479999998652 145788999999998 89999999998766421 1223455554443
Q ss_pred hhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCC----CCCCCCccceeHH
Q 023515 159 VCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ----TYPNVTFGWVNVK 234 (281)
Q Consensus 159 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~ 234 (281)
+. +|..+|.+++ +.+++++++||+++|||..... .....+.++..+.+ ..+.+.++|+|++
T Consensus 186 --------~~-sK~~~E~~l~----~~~l~~~ilRp~~vyG~~~~~~--~~~~~~~~~~~~~~i~~~g~g~~~~~~i~v~ 250 (378)
T PLN00016 186 --------KA-GHLEVEAYLQ----KLGVNWTSFRPQYIYGPGNNKD--CEEWFFDRLVRGRPVPIPGSGIQLTQLGHVK 250 (378)
T ss_pred --------cc-hHHHHHHHHH----HcCCCeEEEeceeEECCCCCCc--hHHHHHHHHHcCCceeecCCCCeeeceecHH
Confidence 22 7999998874 4689999999999999974421 22234445555553 2256788999999
Q ss_pred HHHHHHHHhhcCCCC-CccEEEec-CCCCHHHHHHHHHHhCCC
Q 023515 235 DVANAHIQAFEVPSA-NGRYCLVE-RVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 235 D~a~~i~~~~~~~~~-~g~~~~~~-~~~t~~e~~~~i~~~~~~ 275 (281)
|+|++++.++.++.. +++||+++ +.+|+.|+++.+.+.+|.
T Consensus 251 Dva~ai~~~l~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~ 293 (378)
T PLN00016 251 DLASMFALVVGNPKAAGQIFNIVSDRAVTFDGMAKACAKAAGF 293 (378)
T ss_pred HHHHHHHHHhcCccccCCEEEecCCCccCHHHHHHHHHHHhCC
Confidence 999999999988654 45899975 689999999999999875
|
|
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-29 Score=207.95 Aligned_cols=220 Identities=23% Similarity=0.258 Sum_probs=130.2
Q ss_pred EeCCchHHHHHHHHHHHHCCC--EEEEEEcCCCCcchhhhhhh---cc-----C---CCCcEEEEEcCCCCc------Cc
Q 023515 14 VTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLA---LD-----G---ASERLQLFKANLLEE------GS 74 (281)
Q Consensus 14 ItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~---~~-----~---~~~~~~~~~~D~~~~------~~ 74 (281)
|||||||+|++|+++|++++. +|+++.|........+++.. .. . ...+++++.||++++ ++
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~ 80 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED 80 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence 799999999999999999876 99999998755333333311 00 0 146899999999975 45
Q ss_pred HHHHhcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCee--eecC
Q 023515 75 FDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVV--VDET 152 (281)
Q Consensus 75 ~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~--~~e~ 152 (281)
+..+.+++|+||||||.+... .+++.+.++|+.||.+++++|... +.++|+|+|| +...+.......... ..+.
T Consensus 81 ~~~L~~~v~~IiH~Aa~v~~~--~~~~~~~~~NV~gt~~ll~la~~~-~~~~~~~iST-a~v~~~~~~~~~~~~~~~~~~ 156 (249)
T PF07993_consen 81 YQELAEEVDVIIHCAASVNFN--APYSELRAVNVDGTRNLLRLAAQG-KRKRFHYIST-AYVAGSRPGTIEEKVYPEEED 156 (249)
T ss_dssp HHHHHHH--EEEE--SS-SBS---S--EEHHHHHHHHHHHHHHHTSS-S---EEEEEE-GGGTTS-TTT--SSS-HHH--
T ss_pred hhccccccceeeecchhhhhc--ccchhhhhhHHHHHHHHHHHHHhc-cCcceEEecc-ccccCCCCCcccccccccccc
Confidence 777778999999999987763 355688999999999999999976 5569999999 333322211111111 1111
Q ss_pred CCCChhhhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCc---cHHHHHH-HHhCC-CCC---C
Q 023515 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNT---SAAAVLS-LIKGA-QTY---P 224 (281)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~---~~~~~~~-~~~~~-~~~---~ 224 (281)
.... .....++|..||+.+|+++++++++.|++++++|||.|+|.......+. ....+.. +..+. |.. +
T Consensus 157 ~~~~---~~~~~~gY~~SK~~aE~~l~~a~~~~g~p~~I~Rp~~i~g~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 233 (249)
T PF07993_consen 157 DLDP---PQGFPNGYEQSKWVAERLLREAAQRHGLPVTIYRPGIIVGDSRTGWWNSDDFFPYLLRSCIALGAFPDLPGDP 233 (249)
T ss_dssp EEE-----TTSEE-HHHHHHHHHHHHHHHHHHH---EEEEEE-EEE-SSSSS---TTBHHHHHHHHHHHH-EEES-SB--
T ss_pred cchh---hccCCccHHHHHHHHHHHHHHHHhcCCceEEEEecCcccccCCCceeeccchHHHHHHHHHHcCCcccccCCC
Confidence 1110 1112357999999999999999888899999999999999443322221 2333333 33333 322 3
Q ss_pred CCCccceeHHHHHHHH
Q 023515 225 NVTFGWVNVKDVANAH 240 (281)
Q Consensus 225 ~~~~~~i~~~D~a~~i 240 (281)
+...+++++|.+|++|
T Consensus 234 ~~~~d~vPVD~va~aI 249 (249)
T PF07993_consen 234 DARLDLVPVDYVARAI 249 (249)
T ss_dssp -TT--EEEHHHHHHHH
T ss_pred CceEeEECHHHHHhhC
Confidence 4569999999999986
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-28 Score=218.98 Aligned_cols=266 Identities=18% Similarity=0.178 Sum_probs=178.4
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCC---CEEEEEEcCCCCcchhhhhh-h------------ccC------CCCcEEE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRG---YTVKASVRDPNDPKKTRHLL-A------------LDG------ASERLQL 64 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~-~------------~~~------~~~~~~~ 64 (281)
+++|+|||||||||||++|+++|++.+ .+|+++.|........+++. . ..+ ...++.+
T Consensus 117 ~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~ 196 (605)
T PLN02503 117 LRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVP 196 (605)
T ss_pred hcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEE
Confidence 368999999999999999999999865 37899999765433322221 0 001 1257899
Q ss_pred EEcCCCCc------CcHHHHhcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeec
Q 023515 65 FKANLLEE------GSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLN 138 (281)
Q Consensus 65 ~~~D~~~~------~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~ 138 (281)
+.+|++++ +..+.+.+++|+|||+|+.... ..+++..+++|+.|+.+++++|++....++|||+||.++++.
T Consensus 197 v~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~f--~~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV~vSTayVyG~ 274 (605)
T PLN02503 197 VVGNVCESNLGLEPDLADEIAKEVDVIINSAANTTF--DERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVSTAYVNGQ 274 (605)
T ss_pred EEeeCCCcccCCCHHHHHHHHhcCCEEEECcccccc--ccCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEccCceeecC
Confidence 99999987 3456666789999999998653 244568899999999999999998645789999999877752
Q ss_pred CCCCCCCCeeeecCC-----------------CCCh-------------------------------hhhccCCchhhhh
Q 023515 139 TGKPRTPDVVVDETW-----------------FSDP-------------------------------EVCKQSELWYPLS 170 (281)
Q Consensus 139 ~~~~~~~~~~~~e~~-----------------~~~~-------------------------------~~~~~~~~~Y~~s 170 (281)
..+ ......++..+ ...+ .....-.+.|..+
T Consensus 275 ~~G-~i~E~~y~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~l~~~g~~~~~~~~~pNtYt~T 353 (605)
T PLN02503 275 RQG-RIMEKPFRMGDCIARELGISNSLPHNRPALDIEAEIKLALDSKRHGFQSNSFAQKMKDLGLERAKLYGWQDTYVFT 353 (605)
T ss_pred CCC-eeeeeecCcccccccccccccccccccccCCHHHHHHHHHHhhhcccchHHHHHHhhhcccchhhhCCCCChHHHH
Confidence 211 11111111000 0000 0001123669999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCC------ccHHHHHHHHhCC----CCCCCCCccceeHHHHHHHH
Q 023515 171 KTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLN------TSAAAVLSLIKGA----QTYPNVTFGWVNVKDVANAH 240 (281)
Q Consensus 171 K~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~------~~~~~~~~~~~~~----~~~~~~~~~~i~~~D~a~~i 240 (281)
|+.+|.++++.. .+++++++||+.|.+....|..+ .....+.....|. ...++...|+|++|.++.++
T Consensus 354 K~lAE~lV~~~~--~~LPv~IvRPsiV~st~~eP~pGw~d~~~~~~p~~~~~g~G~lr~~~~~~~~~~DiVPVD~vvna~ 431 (605)
T PLN02503 354 KAMGEMVINSMR--GDIPVVIIRPSVIESTWKDPFPGWMEGNRMMDPIVLYYGKGQLTGFLADPNGVLDVVPADMVVNAT 431 (605)
T ss_pred HHHHHHHHHHhc--CCCCEEEEcCCEecccccCCccccccCccccchhhhheeccceeEEEeCCCeeEeEEeecHHHHHH
Confidence 999999998654 47999999999994422111110 0111111112332 12257788999999999999
Q ss_pred HHhhcC-C----CCCccEEEe-c--CCCCHHHHHHHHHHhCCCCC
Q 023515 241 IQAFEV-P----SANGRYCLV-E--RVSHYSEIVNIIRELYPAFQ 277 (281)
Q Consensus 241 ~~~~~~-~----~~~g~~~~~-~--~~~t~~e~~~~i~~~~~~~~ 277 (281)
+.++.. . ....+||++ + ++++|.++.+.+.+.+.+.|
T Consensus 432 i~a~a~~~~~~~~~~~vYn~ts~~~nP~t~~~~~~~~~~~~~~~P 476 (605)
T PLN02503 432 LAAMAKHGGAAKPEINVYQIASSVVNPLVFQDLARLLYEHYKSSP 476 (605)
T ss_pred HHHHHhhhcccCCCCCEEEeCCCCCCCeEHHHHHHHHHHHHhhCC
Confidence 998431 1 123489996 5 79999999999998776544
|
|
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-28 Score=202.12 Aligned_cols=255 Identities=22% Similarity=0.213 Sum_probs=176.4
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhhhhc--------cCCCCcEEEEEcCCCCc------Cc
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLAL--------DGASERLQLFKANLLEE------GS 74 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~--------~~~~~~~~~~~~D~~~~------~~ 74 (281)
+++|+||||||+|++++++|+.+- .+|++++|..+....+.++.+. .....+++.+.||+..+ ..
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~~ 80 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSERT 80 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHHH
Confidence 479999999999999999999875 5999999988766555554432 12346899999999854 45
Q ss_pred HHHHhcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCC
Q 023515 75 FDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWF 154 (281)
Q Consensus 75 ~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~ 154 (281)
+..+.+.+|.|||+||.+.. ..++.++...|+.||..+++.|... +.|.+.|+||+++...... .......+|..+
T Consensus 81 ~~~La~~vD~I~H~gA~Vn~--v~pYs~L~~~NVlGT~evlrLa~~g-k~Kp~~yVSsisv~~~~~~-~~~~~~~~~~~~ 156 (382)
T COG3320 81 WQELAENVDLIIHNAALVNH--VFPYSELRGANVLGTAEVLRLAATG-KPKPLHYVSSISVGETEYY-SNFTVDFDEISP 156 (382)
T ss_pred HHHHhhhcceEEecchhhcc--cCcHHHhcCcchHhHHHHHHHHhcC-CCceeEEEeeeeecccccc-CCCccccccccc
Confidence 88888899999999998775 4667799999999999999999997 8888999999987653322 222222222222
Q ss_pred CChhhhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC---CCCC--CCCcc
Q 023515 155 SDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA---QTYP--NVTFG 229 (281)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~ 229 (281)
.... .....++|+.||+++|.++++..+. |++++++|||.|.|+.....++.. .++.++..+. -.+| ....+
T Consensus 157 ~~~~-~~~~~~GY~~SKwvaE~Lvr~A~~r-GLpv~I~Rpg~I~gds~tG~~n~~-D~~~Rlv~~~~~lg~~P~~~~~~~ 233 (382)
T COG3320 157 TRNV-GQGLAGGYGRSKWVAEKLVREAGDR-GLPVTIFRPGYITGDSRTGALNTR-DFLTRLVLGLLQLGIAPDSEYSLD 233 (382)
T ss_pred cccc-cCccCCCcchhHHHHHHHHHHHhhc-CCCeEEEecCeeeccCccCccccc-hHHHHHHHHHHHhCCCCCcccchh
Confidence 2111 1123467999999999999999877 999999999999998765544433 2333433332 1122 22333
Q ss_pred ceeHHHHHHHHH-----------HhhcCC-CCCccEEE--ecCCCCHHHHHHHHHH
Q 023515 230 WVNVKDVANAHI-----------QAFEVP-SANGRYCL--VERVSHYSEIVNIIRE 271 (281)
Q Consensus 230 ~i~~~D~a~~i~-----------~~~~~~-~~~g~~~~--~~~~~t~~e~~~~i~~ 271 (281)
.+.++++++++. .+..++ ....+|.+ .+..+...++.+.+.+
T Consensus 234 ~~p~~~v~~~v~~~~~~~~~~~~~l~~~~~~~f~~~~~~~~~~~i~l~~~~~w~~~ 289 (382)
T COG3320 234 MLPVDHVARAVVAPSVQVAEAIAALGAHSDIRFNQLHMLTHPDEIGLDEYVDWLIS 289 (382)
T ss_pred hCccceeeEEeehhhhhHHHHHHHhccCccchhhheecccCCCccchhHHHHhHhh
Confidence 444444443333 233211 11235553 3678888888888777
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-27 Score=220.61 Aligned_cols=196 Identities=22% Similarity=0.230 Sum_probs=156.5
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEec
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a 89 (281)
|+|+|||||||||++++++|+++|++|++++|+..... ..+++++++|++|.+.+.++++++|+|||+|
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~~-----------~~~v~~v~gDL~D~~~l~~al~~vD~VVHlA 69 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDSW-----------PSSADFIAADIRDATAVESAMTGADVVAHCA 69 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhhc-----------ccCceEEEeeCCCHHHHHHHHhCCCEEEECC
Confidence 47999999999999999999999999999998753210 1257899999999999999999999999999
Q ss_pred ccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchhhh
Q 023515 90 SPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPL 169 (281)
Q Consensus 90 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~ 169 (281)
+.... ..++|+.++.+++++|++. ++++||++||..
T Consensus 70 a~~~~--------~~~vNv~GT~nLLeAa~~~-gvkr~V~iSS~~----------------------------------- 105 (854)
T PRK05865 70 WVRGR--------NDHINIDGTANVLKAMAET-GTGRIVFTSSGH----------------------------------- 105 (854)
T ss_pred Ccccc--------hHHHHHHHHHHHHHHHHHc-CCCeEEEECCcH-----------------------------------
Confidence 75321 4589999999999999998 788999999841
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCC--CC--CCCccceeHHHHHHHHHHhhc
Q 023515 170 SKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT--YP--NVTFGWVNVKDVANAHIQAFE 245 (281)
Q Consensus 170 sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~i~~~D~a~~i~~~~~ 245 (281)
|.++|++++ +++++++++||+++|||+.. ..+..... .+. .| .+.++|+|++|+|++++.+++
T Consensus 106 -K~aaE~ll~----~~gl~~vILRp~~VYGP~~~-------~~i~~ll~-~~v~~~G~~~~~~dfIhVdDVA~Ai~~aL~ 172 (854)
T PRK05865 106 -QPRVEQMLA----DCGLEWVAVRCALIFGRNVD-------NWVQRLFA-LPVLPAGYADRVVQVVHSDDAQRLLVRALL 172 (854)
T ss_pred -HHHHHHHHH----HcCCCEEEEEeceEeCCChH-------HHHHHHhc-CceeccCCCCceEeeeeHHHHHHHHHHHHh
Confidence 777887773 46899999999999998621 22332222 221 22 445699999999999999987
Q ss_pred CCC-CCccEEEe-cCCCCHHHHHHHHHHhC
Q 023515 246 VPS-ANGRYCLV-ERVSHYSEIVNIIRELY 273 (281)
Q Consensus 246 ~~~-~~g~~~~~-~~~~t~~e~~~~i~~~~ 273 (281)
+.. .+++||++ ++.+|+.|+++.+.+..
T Consensus 173 ~~~~~ggvyNIgsg~~~Si~EIae~l~~~~ 202 (854)
T PRK05865 173 DTVIDSGPVNLAAPGELTFRRIAAALGRPM 202 (854)
T ss_pred CCCcCCCeEEEECCCcccHHHHHHHHhhhh
Confidence 543 45699987 57899999999988743
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=198.19 Aligned_cols=224 Identities=18% Similarity=0.158 Sum_probs=158.2
Q ss_pred hccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 5 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
..+++|++|||||+|+||++++++|+++|++|++++|++++.....+..... ..++.++++|++|.+.+.++++
T Consensus 3 ~~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~ 80 (262)
T PRK13394 3 SNLNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKA--GGKAIGVAMDVTNEDAVNAGIDKVAE 80 (262)
T ss_pred ccCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhc--CceEEEEECCCCCHHHHHHHHHHHHH
Confidence 3466899999999999999999999999999999999876544433322211 2467889999999988887765
Q ss_pred ---CCcEeEEecccCCC-----CCCCccchhhhhHHHH----HHHHHHHh-hhCCCccEEEEeccceeeecCCCCCCCCe
Q 023515 81 ---GCDGVCHTASPFYH-----DAKDPQVELLDPAVKG----TLNVLNSC-AKFPSIKRVVLTSSMAAVLNTGKPRTPDV 147 (281)
Q Consensus 81 ---~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~----~~~l~~~~-~~~~~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (281)
++|+||||||.... ...+.++..+++|+.+ +.++++++ +.. +.++||++||..+..+.+
T Consensus 81 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~-~~~~iv~~ss~~~~~~~~------- 152 (262)
T PRK13394 81 RFGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDD-RGGVVIYMGSVHSHEASP------- 152 (262)
T ss_pred HcCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhc-CCcEEEEEcchhhcCCCC-------
Confidence 48999999986432 1223356778899999 44555555 443 578999999976554211
Q ss_pred eeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCc--------cHHHHHHH
Q 023515 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNT--------SAAAVLSL 216 (281)
Q Consensus 148 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~--------~~~~~~~~ 216 (281)
....|+.+|.+.+.+++.++++ .+++++++||+.+++|........ ......+.
T Consensus 153 ---------------~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (262)
T PRK13394 153 ---------------LKSAYVTAKHGLLGLARVLAKEGAKHNVRSHVVCPGFVRTPLVDKQIPEQAKELGISEEEVVKKV 217 (262)
T ss_pred ---------------CCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccchhhhhhhHhhhhccCCChHHHHHHH
Confidence 1234999999999999998876 489999999999999863221100 01112222
Q ss_pred HhCCCCCCCCCccceeHHHHHHHHHHhhcCCCC--Cc-cEEEec
Q 023515 217 IKGAQTYPNVTFGWVNVKDVANAHIQAFEVPSA--NG-RYCLVE 257 (281)
Q Consensus 217 ~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~~--~g-~~~~~~ 257 (281)
+.+ +...++|++++|+++++++++..... .| .|++.+
T Consensus 218 ~~~----~~~~~~~~~~~dva~a~~~l~~~~~~~~~g~~~~~~~ 257 (262)
T PRK13394 218 MLG----KTVDGVFTTVEDVAQTVLFLSSFPSAALTGQSFVVSH 257 (262)
T ss_pred Hhc----CCCCCCCCCHHHHHHHHHHHcCccccCCcCCEEeeCC
Confidence 222 23456799999999999999986543 35 455543
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-27 Score=198.20 Aligned_cols=233 Identities=18% Similarity=0.179 Sum_probs=164.5
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------C
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------G 81 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~ 81 (281)
.|++|||||+|+||++++++|+++|++|++++|+.+....+... . ..++.++++|++|.+++.++++ +
T Consensus 2 ~k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~---~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 76 (276)
T PRK06482 2 SKTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKAR---Y--GDRLWVLQLDVTDSAAVRAVVDRAFAALGR 76 (276)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh---c--cCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 46899999999999999999999999999999986443332221 1 1368899999999988877654 5
Q ss_pred CcEeEEecccCCCC-----CCCccchhhhhHHHHHHHHHHHhhhC---CCccEEEEeccceeeecCCCCCCCCeeeecCC
Q 023515 82 CDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (281)
Q Consensus 82 ~d~Vih~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~ 153 (281)
+|+||||||..... ..+.++..+++|+.++.++++++.+. .+.++||++||..+..+.+
T Consensus 77 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~------------- 143 (276)
T PRK06482 77 IDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSSEGGQIAYP------------- 143 (276)
T ss_pred CCEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCcccccCCC-------------
Confidence 79999999863321 12335578889999999999998542 2567999999976543111
Q ss_pred CCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcc---cCCCCCCC-----CC-ccHHHHHHHHhCCC
Q 023515 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMV---IGPLLQPT-----LN-TSAAAVLSLIKGAQ 221 (281)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v---~g~~~~~~-----~~-~~~~~~~~~~~~~~ 221 (281)
..+.|+.+|++.|.+++.++++ +|++++++|||.+ ||+..... .. .....+.+.....
T Consensus 144 ---------~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 213 (276)
T PRK06482 144 ---------GFSLYHATKWGIEGFVEAVAQEVAPFGIEFTIVEPGPARTNFGAGLDRGAPLDAYDDTPVGDLRRALADG- 213 (276)
T ss_pred ---------CCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCccccCCcccccccCCCccccchhhHHHHHHHhhc-
Confidence 1245999999999999998876 5999999999988 44332211 00 1111222222221
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhC
Q 023515 222 TYPNVTFGWVNVKDVANAHIQAFEVPSANGRYCLV-ERVSHYSEIVNIIRELY 273 (281)
Q Consensus 222 ~~~~~~~~~i~~~D~a~~i~~~~~~~~~~g~~~~~-~~~~t~~e~~~~i~~~~ 273 (281)
...-+.+++|++++++.++..+.....|+++ +...+..|++..+.+.+
T Consensus 214 ----~~~~~~d~~~~~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 262 (276)
T PRK06482 214 ----SFAIPGDPQKMVQAMIASADQTPAPRRLTLGSDAYASIRAALSERLAAL 262 (276)
T ss_pred ----cCCCCCCHHHHHHHHHHHHcCCCCCeEEecChHHHHHHHHHHHHHHHHH
Confidence 1112468999999999999876655678887 45667777766555443
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-27 Score=186.66 Aligned_cols=211 Identities=17% Similarity=0.147 Sum_probs=163.2
Q ss_pred hccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 5 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
...++|.++|||||++||.++++.|.+.|++|++..|+.++.+.+...... ..+..+..|++|+++++.+++
T Consensus 2 ~~~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~----~~~~~~~~DVtD~~~~~~~i~~~~~ 77 (246)
T COG4221 2 TTLKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGA----GAALALALDVTDRAAVEAAIEALPE 77 (246)
T ss_pred CCCCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhcc----CceEEEeeccCCHHHHHHHHHHHHH
Confidence 345689999999999999999999999999999999998877666554321 468999999999988666654
Q ss_pred ---CCcEeEEeccc-----CCCCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeee
Q 023515 81 ---GCDGVCHTASP-----FYHDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (281)
Q Consensus 81 ---~~d~Vih~a~~-----~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (281)
++|++|||||. ......++|++++++|+.|..+..++..+.| +.+++|++||+++.+..+
T Consensus 78 ~~g~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG~~~y~--------- 148 (246)
T COG4221 78 EFGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIAGRYPYP--------- 148 (246)
T ss_pred hhCcccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEeccccccccCC---------
Confidence 79999999996 2233456789999999999999999999863 456899999998766211
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCC-ccHHHHHHHHhCCCCCCC
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLN-TSAAAVLSLIKGAQTYPN 225 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~-~~~~~~~~~~~~~~~~~~ 225 (281)
..+.|+.+|++...+.+.+..+. +++++.|.||.+-+........ .......+...
T Consensus 149 -------------~~~vY~ATK~aV~~fs~~LR~e~~g~~IRVt~I~PG~v~~~~~s~v~~~g~~~~~~~~y~------- 208 (246)
T COG4221 149 -------------GGAVYGATKAAVRAFSLGLRQELAGTGIRVTVISPGLVETTEFSTVRFEGDDERADKVYK------- 208 (246)
T ss_pred -------------CCccchhhHHHHHHHHHHHHHHhcCCCeeEEEecCceecceecccccCCchhhhHHHHhc-------
Confidence 13459999999999999988775 8999999999995542221111 01112222212
Q ss_pred CCccceeHHHHHHHHHHhhcCCCC
Q 023515 226 VTFGWVNVKDVANAHIQAFEVPSA 249 (281)
Q Consensus 226 ~~~~~i~~~D~a~~i~~~~~~~~~ 249 (281)
...++.++|+|+++.+++++|..
T Consensus 209 -~~~~l~p~dIA~~V~~~~~~P~~ 231 (246)
T COG4221 209 -GGTALTPEDIAEAVLFAATQPQH 231 (246)
T ss_pred -cCCCCCHHHHHHHHHHHHhCCCc
Confidence 23488999999999999999875
|
|
| >COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=184.08 Aligned_cols=253 Identities=21% Similarity=0.232 Sum_probs=198.4
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC--cchhhhhhhccC-CCCcEEEEEcCCCCcCcHHHHhc--CC
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND--PKKTRHLLALDG-ASERLQLFKANLLEEGSFDSIVD--GC 82 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~--~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~--~~ 82 (281)
++|++||||-||.-|++|++.|+++||+|+++.|+.+. ..++ ++..... ...++.++.+|++|...+..+++ ++
T Consensus 1 ~~K~ALITGITGQDGsYLa~lLLekGY~VhGi~Rrss~~n~~ri-~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v~P 79 (345)
T COG1089 1 MGKVALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRI-HLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEVQP 79 (345)
T ss_pred CCceEEEecccCCchHHHHHHHHhcCcEEEEEeeccccCCcccc-eeccccccCCceeEEEeccccchHHHHHHHHhcCc
Confidence 37899999999999999999999999999999998543 3322 3333322 22458999999999999999887 78
Q ss_pred cEeEEeccc--CCCCCCCccchhhhhHHHHHHHHHHHhhhCCC-ccEEEEeccceeeecCCCCCCCCeeeecCCCCChhh
Q 023515 83 DGVCHTASP--FYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEV 159 (281)
Q Consensus 83 d~Vih~a~~--~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~ 159 (281)
|-|+|+||. +..+.+.+. ...+++..|+.+||++.+-..+ ..+|...|| +..+|.. ...+.+|.+|..|-
T Consensus 80 dEIYNLaAQS~V~vSFe~P~-~T~~~~~iGtlrlLEaiR~~~~~~~rfYQASt-SE~fG~v----~~~pq~E~TPFyPr- 152 (345)
T COG1089 80 DEIYNLAAQSHVGVSFEQPE-YTADVDAIGTLRLLEAIRILGEKKTRFYQAST-SELYGLV----QEIPQKETTPFYPR- 152 (345)
T ss_pred hhheeccccccccccccCcc-eeeeechhHHHHHHHHHHHhCCcccEEEeccc-HHhhcCc----ccCccccCCCCCCC-
Confidence 999999996 444455554 8889999999999999998733 346777777 4666543 45567888888865
Q ss_pred hccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCC--CccHHHHHHHHhCCC---CCC--CCCcccee
Q 023515 160 CKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL--NTSAAAVLSLIKGAQ---TYP--NVTFGWVN 232 (281)
Q Consensus 160 ~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~--~~~~~~~~~~~~~~~---~~~--~~~~~~i~ 232 (281)
+||+.+|..+-.....+.+.+|+-.+.=...+--+|...... ..+...+.++..|.+ -+| +..|||.|
T Consensus 153 -----SPYAvAKlYa~W~tvNYResYgl~AcnGILFNHESP~Rge~FVTRKIt~ava~Ik~G~q~~l~lGNldAkRDWG~ 227 (345)
T COG1089 153 -----SPYAVAKLYAYWITVNYRESYGLFACNGILFNHESPLRGETFVTRKITRAVARIKLGLQDKLYLGNLDAKRDWGH 227 (345)
T ss_pred -----CHHHHHHHHHHheeeehHhhcCceeecceeecCCCCCCccceehHHHHHHHHHHHccccceEEeccccccccccc
Confidence 789999999999999999999998888778887777654332 224455666777762 224 78999999
Q ss_pred HHHHHHHHHHhhcCCCCCccEEE-ecCCCCHHHHHHHHHHhCC
Q 023515 233 VKDVANAHIQAFEVPSANGRYCL-VERVSHYSEIVNIIRELYP 274 (281)
Q Consensus 233 ~~D~a~~i~~~~~~~~~~g~~~~-~~~~~t~~e~~~~i~~~~~ 274 (281)
..|.+++++.++++..+ .-|++ +|+..|++|+++.-++..|
T Consensus 228 A~DYVe~mwlmLQq~~P-ddyViATg~t~sVrefv~~Af~~~g 269 (345)
T COG1089 228 AKDYVEAMWLMLQQEEP-DDYVIATGETHSVREFVELAFEMVG 269 (345)
T ss_pred hHHHHHHHHHHHccCCC-CceEEecCceeeHHHHHHHHHHHcC
Confidence 99999999999998774 35665 5889999999999998876
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-26 Score=192.60 Aligned_cols=233 Identities=17% Similarity=0.093 Sum_probs=169.1
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------- 80 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------- 80 (281)
++|+|+||||+|+||++++++|+++|++|++++|++++...+... . ...+.++++|++|.+++.++++
T Consensus 2 ~~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~---~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 76 (275)
T PRK08263 2 MEKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADLAEK---Y--GDRLLPLALDVTDRAAVFAAVETAVEHFG 76 (275)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh---c--cCCeeEEEccCCCHHHHHHHHHHHHHHcC
Confidence 367899999999999999999999999999999986543332221 1 2357888999999988877665
Q ss_pred CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhC---CCccEEEEeccceeeecCCCCCCCCeeeecC
Q 023515 81 GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (281)
Q Consensus 81 ~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~ 152 (281)
++|+||||||.... ...+.++..+++|+.++.++++.+.+. .+.+++|++||..++.+.+
T Consensus 77 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~~~~------------ 144 (275)
T PRK08263 77 RLDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSGHIIQISSIGGISAFP------------ 144 (275)
T ss_pred CCCEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcCCCC------------
Confidence 57999999996332 223456788999999999999987532 1567899999987765221
Q ss_pred CCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCC--c-c--HHHH-HHHHhCCCCC
Q 023515 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLN--T-S--AAAV-LSLIKGAQTY 223 (281)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~--~-~--~~~~-~~~~~~~~~~ 223 (281)
....|+.+|++.+.+++.++.+ +|++++++|||.+.++....... . . ...+ .......
T Consensus 145 ----------~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 211 (275)
T PRK08263 145 ----------MSGIYHASKWALEGMSEALAQEVAEFGIKVTLVEPGGYSTDWAGTSAKRATPLDAYDTLREELAEQW--- 211 (275)
T ss_pred ----------CccHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCccCCccccccccCCCchhhhhHHHHHHHHH---
Confidence 1245999999999999988775 58999999999998875421110 0 0 0111 1111110
Q ss_pred CCCCccc-eeHHHHHHHHHHhhcCCCCCccEEEec--CCCCHHHHHHHHHHh
Q 023515 224 PNVTFGW-VNVKDVANAHIQAFEVPSANGRYCLVE--RVSHYSEIVNIIREL 272 (281)
Q Consensus 224 ~~~~~~~-i~~~D~a~~i~~~~~~~~~~g~~~~~~--~~~t~~e~~~~i~~~ 272 (281)
....+ ++++|+|++++.+++.+...+.|+.++ ..+++.++.+.+.+.
T Consensus 212 --~~~~~~~~p~dva~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (275)
T PRK08263 212 --SERSVDGDPEAAAEALLKLVDAENPPLRLFLGSGVLDLAKADYERRLATW 261 (275)
T ss_pred --HhccCCCCHHHHHHHHHHHHcCCCCCeEEEeCchHHHHHHHHHHHHHHHH
Confidence 12235 899999999999999877767666653 578888888888764
|
|
| >KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.4e-27 Score=180.07 Aligned_cols=236 Identities=17% Similarity=0.205 Sum_probs=182.5
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCC--EEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--CCcE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDG 84 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~ 84 (281)
+++|||||++|.+|++|.+.+.+.|. +-+++.-+ -.+|+++.++.+++++ ++..
T Consensus 1 s~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~s----------------------kd~DLt~~a~t~~lF~~ekPth 58 (315)
T KOG1431|consen 1 SKKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIGS----------------------KDADLTNLADTRALFESEKPTH 58 (315)
T ss_pred CceEEEecCCchHHHHHHHHHHhcCCCCcceEEecc----------------------ccccccchHHHHHHHhccCCce
Confidence 46899999999999999999998875 33333211 1368999999999987 6899
Q ss_pred eEEecccCCC---CCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhc
Q 023515 85 VCHTASPFYH---DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCK 161 (281)
Q Consensus 85 Vih~a~~~~~---~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 161 (281)
|||+|+.+.. ....+. ++++.|+.-.-|+++.|-++ +++++|+..|.+.| |+....+++|.....-. +.
T Consensus 59 VIhlAAmVGGlf~N~~ynl-dF~r~Nl~indNVlhsa~e~-gv~K~vsclStCIf-----Pdkt~yPIdEtmvh~gp-ph 130 (315)
T KOG1431|consen 59 VIHLAAMVGGLFHNNTYNL-DFIRKNLQINDNVLHSAHEH-GVKKVVSCLSTCIF-----PDKTSYPIDETMVHNGP-PH 130 (315)
T ss_pred eeehHhhhcchhhcCCCch-HHHhhcceechhHHHHHHHh-chhhhhhhcceeec-----CCCCCCCCCHHHhccCC-CC
Confidence 9999987442 234444 88999999999999999998 89999999887654 45667788887654421 22
Q ss_pred cCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCC---CccHHHHHHH---HhCC----CCC--CCCCcc
Q 023515 162 QSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL---NTSAAAVLSL---IKGA----QTY--PNVTFG 229 (281)
Q Consensus 162 ~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~---~~~~~~~~~~---~~~~----~~~--~~~~~~ 229 (281)
+...+|+.+|+.+.-..+.|..++|...+.+-|+++|||.++-.. .-++.++++. .... .+| |...|+
T Consensus 131 psN~gYsyAKr~idv~n~aY~~qhg~~~tsviPtNvfGphDNfnpe~sHVlPali~r~h~ak~~gtd~~~VwGsG~PlRq 210 (315)
T KOG1431|consen 131 PSNFGYSYAKRMIDVQNQAYRQQHGRDYTSVIPTNVFGPHDNFNPENSHVLPALIHRFHEAKRNGTDELTVWGSGSPLRQ 210 (315)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhCCceeeeccccccCCCCCCCcccccchHHHHHHHHHHHhcCCceEEEecCCChHHH
Confidence 234579999999998889999999999999999999999764222 2345666553 2222 244 467799
Q ss_pred ceeHHHHHHHHHHhhcCCCCCccEEEe-cC--CCCHHHHHHHHHHhCC
Q 023515 230 WVNVKDVANAHIQAFEVPSANGRYCLV-ER--VSHYSEIVNIIRELYP 274 (281)
Q Consensus 230 ~i~~~D~a~~i~~~~~~~~~~g~~~~~-~~--~~t~~e~~~~i~~~~~ 274 (281)
|+|.+|+|+++++++++-+.-.-.+++ |+ .+|++|+++++.++++
T Consensus 211 Fiys~DLA~l~i~vlr~Y~~vEpiils~ge~~EVtI~e~aeaV~ea~~ 258 (315)
T KOG1431|consen 211 FIYSDDLADLFIWVLREYEGVEPIILSVGESDEVTIREAAEAVVEAVD 258 (315)
T ss_pred HhhHhHHHHHHHHHHHhhcCccceEeccCccceeEHHHHHHHHHHHhC
Confidence 999999999999999987766656665 55 8999999999999864
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-26 Score=193.14 Aligned_cols=223 Identities=17% Similarity=0.146 Sum_probs=158.8
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------- 80 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------- 80 (281)
+++++|||||+|+||+++++.|+++|++|++++|+++....+...........++.++.+|++|++++.. ++
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~~~~~ 80 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHN-FQLVLKEIG 80 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHH-HHHHHHhcC
Confidence 4688999999999999999999999999999999876554443332221112468999999999988765 43
Q ss_pred CCcEeEEecccCCCC-----CCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeecC
Q 023515 81 GCDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (281)
Q Consensus 81 ~~d~Vih~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~ 152 (281)
++|+||||||..... ..+.+++.+++|+.++.++++.+.+.+ +.++||++||..+..+.+
T Consensus 81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~~~~------------ 148 (280)
T PRK06914 81 RIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKSGKIINISSISGRVGFP------------ 148 (280)
T ss_pred CeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECcccccCCCC------------
Confidence 579999999863321 123455778899999999999975431 567899999976655321
Q ss_pred CCCChhhhccCCchhhhhHHHHHHHHHHHHH---hcCCcEEEEcCCcccCCCCCCCCC---------c-cHHHHHHHHhC
Q 023515 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAK---EKSIDLVTINPAMVIGPLLQPTLN---------T-SAAAVLSLIKG 219 (281)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~---~~g~~~~~irp~~v~g~~~~~~~~---------~-~~~~~~~~~~~ 219 (281)
....|+.+|.+.+.++++++. ..|++++++|||.++++....... . ....+......
T Consensus 149 ----------~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (280)
T PRK06914 149 ----------GLSPYVSSKYALEGFSESLRLELKPFGIDVALIEPGSYNTNIWEVGKQLAENQSETTSPYKEYMKKIQKH 218 (280)
T ss_pred ----------CCchhHHhHHHHHHHHHHHHHHhhhhCCEEEEEecCCcccchhhccccccccccccccchHHHHHHHHHH
Confidence 123599999999999998874 358999999999999885332110 0 01111111110
Q ss_pred CCCCCCCCccceeHHHHHHHHHHhhcCCCCCccEEEe
Q 023515 220 AQTYPNVTFGWVNVKDVANAHIQAFEVPSANGRYCLV 256 (281)
Q Consensus 220 ~~~~~~~~~~~i~~~D~a~~i~~~~~~~~~~g~~~~~ 256 (281)
. +.....+++++|+|++++++++++.....|+++
T Consensus 219 ~---~~~~~~~~~~~dva~~~~~~~~~~~~~~~~~~~ 252 (280)
T PRK06914 219 I---NSGSDTFGNPIDVANLIVEIAESKRPKLRYPIG 252 (280)
T ss_pred H---hhhhhccCCHHHHHHHHHHHHcCCCCCcccccC
Confidence 0 112345789999999999999988765567765
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-26 Score=189.54 Aligned_cols=228 Identities=21% Similarity=0.169 Sum_probs=158.1
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC-cchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
++++++++||||+|+||++++++|+++|++|++++|+..+ .+.+....... ..++.++++|+++++++..+++
T Consensus 3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (248)
T PRK07806 3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAA--GGRASAVGADLTDEESVAALMDTARE 80 (248)
T ss_pred CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999999987532 22222211111 2457889999999988877665
Q ss_pred ---CCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCC-ccEEEEeccceeeecCCCCCCCCeeeecCCCCC
Q 023515 81 ---GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSD 156 (281)
Q Consensus 81 ---~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~ 156 (281)
++|+|||+|+..... ...+...+++|+.++.++++++.+.+. .+++|++||..+..... .+..+
T Consensus 81 ~~~~~d~vi~~ag~~~~~-~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~---------~~~~~-- 148 (248)
T PRK07806 81 EFGGLDALVLNASGGMES-GMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQAHFIPT---------VKTMP-- 148 (248)
T ss_pred hCCCCcEEEECCCCCCCC-CCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchhhcCcc---------ccCCc--
Confidence 589999999863322 223457889999999999999998643 35899999964432100 01111
Q ss_pred hhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCC-ccHHHHHHHHhCCCCCCCCCcccee
Q 023515 157 PEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLN-TSAAAVLSLIKGAQTYPNVTFGWVN 232 (281)
Q Consensus 157 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~ 232 (281)
....|+.+|.++|.+++.++.+ .++++++++|+.+.++....... ......... . .....+++
T Consensus 149 ------~~~~Y~~sK~a~e~~~~~l~~~~~~~~i~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~ 215 (248)
T PRK07806 149 ------EYEPVARSKRAGEDALRALRPELAEKGIGFVVVSGDMIEGTVTATLLNRLNPGAIEAR-R------EAAGKLYT 215 (248)
T ss_pred ------cccHHHHHHHHHHHHHHHHHHHhhccCeEEEEeCCccccCchhhhhhccCCHHHHHHH-H------hhhcccCC
Confidence 1245999999999999998765 48999999999887764211000 011111100 0 01235899
Q ss_pred HHHHHHHHHHhhcCCCCCc-cEEEecCCC
Q 023515 233 VKDVANAHIQAFEVPSANG-RYCLVERVS 260 (281)
Q Consensus 233 ~~D~a~~i~~~~~~~~~~g-~~~~~~~~~ 260 (281)
++|+|++++++++.....| +|++++...
T Consensus 216 ~~dva~~~~~l~~~~~~~g~~~~i~~~~~ 244 (248)
T PRK07806 216 VSEFAAEVARAVTAPVPSGHIEYVGGADY 244 (248)
T ss_pred HHHHHHHHHHHhhccccCccEEEecCccc
Confidence 9999999999999766566 677776443
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.2e-26 Score=190.54 Aligned_cols=221 Identities=16% Similarity=0.092 Sum_probs=156.6
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------- 80 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------- 80 (281)
++++|+||||+|+||++++++|+++|++|++++|+.++...+... . ..++.++++|++|.+.+..+++
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~---~--~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 77 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEAL---H--PDRALARLLDVTDFDAIDAVVADAEATFG 77 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhh---c--CCCeeEEEccCCCHHHHHHHHHHHHHHhC
Confidence 478899999999999999999999999999999986543332221 1 2367889999999988877766
Q ss_pred CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhC---CCccEEEEeccceeeecCCCCCCCCeeeecC
Q 023515 81 GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (281)
Q Consensus 81 ~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~ 152 (281)
++|+||||||.... ...+.++..+++|+.++.++++++.+. .+.+++|++||..+..+.+
T Consensus 78 ~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS~~~~~~~~------------ 145 (277)
T PRK06180 78 PIDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITSMGGLITMP------------ 145 (277)
T ss_pred CCCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEecccccCCCC------------
Confidence 57999999986321 112335577899999999999997653 1456899999987664221
Q ss_pred CCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCC----ccHH---HHHHHHhCCCC
Q 023515 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLN----TSAA---AVLSLIKGAQT 222 (281)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~----~~~~---~~~~~~~~~~~ 222 (281)
....|+.+|.+.|.+++.++.+ +|++++++|||.+.++....... .... .+........
T Consensus 146 ----------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 214 (277)
T PRK06180 146 ----------GIGYYCGSKFALEGISESLAKEVAPFGIHVTAVEPGSFRTDWAGRSMVRTPRSIADYDALFGPIRQARE- 214 (277)
T ss_pred ----------CcchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCcccCccccccccCCCCcHhHHHHHHHHHHHHH-
Confidence 1245999999999999998875 48999999999998875322111 1111 1111100000
Q ss_pred CCCCCccceeHHHHHHHHHHhhcCCCCCccEEEec
Q 023515 223 YPNVTFGWVNVKDVANAHIQAFEVPSANGRYCLVE 257 (281)
Q Consensus 223 ~~~~~~~~i~~~D~a~~i~~~~~~~~~~g~~~~~~ 257 (281)
......+..++|+|++++.+++.+.....|..+.
T Consensus 215 -~~~~~~~~~~~dva~~~~~~l~~~~~~~~~~~g~ 248 (277)
T PRK06180 215 -AKSGKQPGDPAKAAQAILAAVESDEPPLHLLLGS 248 (277)
T ss_pred -hhccCCCCCHHHHHHHHHHHHcCCCCCeeEeccH
Confidence 0112346789999999999999776555565553
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.7e-26 Score=189.99 Aligned_cols=223 Identities=13% Similarity=0.067 Sum_probs=157.2
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++|+++||||+|+||++++++|+++|++|++++|+............. ...++.++++|+++.+++.++++
T Consensus 8 ~~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 85 (274)
T PRK07775 8 PDRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRA--DGGEAVAFPLDVTDPDSVKSFVAQAEEAL 85 (274)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHHHHHhc
Confidence 4578999999999999999999999999999999876443322221111 12468889999999998887765
Q ss_pred -CCcEeEEecccCCCC-----CCCccchhhhhHHHHHHHHHHHhhhC---CCccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 -GCDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 -~~d~Vih~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
++|+|||+||..... ..+.++..+++|+.++.++++.+.+. .+.++||++||..++.+.+
T Consensus 86 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g~iv~isS~~~~~~~~----------- 154 (274)
T PRK07775 86 GEIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRGDLIFVGSDVALRQRP----------- 154 (274)
T ss_pred CCCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECChHhcCCCC-----------
Confidence 579999999863321 12334567899999999999998753 1446899999976654211
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCC-CccHHHHHHHHhCCCCCCCCC
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTL-NTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 227 (281)
....|+.+|++.|.+++.++++. |++++++|||.+.++...... ......+....... +...
T Consensus 155 -----------~~~~Y~~sK~a~~~l~~~~~~~~~~~gi~v~~v~pG~~~t~~~~~~~~~~~~~~~~~~~~~~---~~~~ 220 (274)
T PRK07775 155 -----------HMGAYGAAKAGLEAMVTNLQMELEGTGVRASIVHPGPTLTGMGWSLPAEVIGPMLEDWAKWG---QARH 220 (274)
T ss_pred -----------CcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCCcccCcccccCChhhhhHHHHHHHHhc---cccc
Confidence 12349999999999999998764 899999999998765321111 11111111111100 1234
Q ss_pred ccceeHHHHHHHHHHhhcCCCCCccEEEe
Q 023515 228 FGWVNVKDVANAHIQAFEVPSANGRYCLV 256 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~~~g~~~~~ 256 (281)
..+++++|+|++++.+++++.....||+.
T Consensus 221 ~~~~~~~dva~a~~~~~~~~~~~~~~~~~ 249 (274)
T PRK07775 221 DYFLRASDLARAITFVAETPRGAHVVNME 249 (274)
T ss_pred ccccCHHHHHHHHHHHhcCCCCCCeeEEe
Confidence 56899999999999999877544477764
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-26 Score=192.56 Aligned_cols=236 Identities=16% Similarity=0.113 Sum_probs=162.1
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++|+++||||+|+||++++++|+++|++|++.+|+.+..+.+.+.... ...++.++++|++|.+++.++++
T Consensus 3 ~~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~--~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 80 (275)
T PRK05876 3 GFPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRA--EGFDVHGVMCDVRHREEVTHLADEAFRL 80 (275)
T ss_pred CcCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 46689999999999999999999999999999999886544333222211 12357889999999998887765
Q ss_pred --CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---C-ccEEEEeccceeeecCCCCCCCCeee
Q 023515 81 --GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---S-IKRVVLTSSMAAVLNTGKPRTPDVVV 149 (281)
Q Consensus 81 --~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~-~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (281)
++|+||||||... ....+.++..+++|+.++.++++++.+.+ + .+++|++||..++.+.+
T Consensus 81 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~~~~~~~~--------- 151 (275)
T PRK05876 81 LGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLVPNA--------- 151 (275)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCChhhccCCC---------
Confidence 4799999998622 22234466788999999999999987532 2 46899999987654211
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC-CCCC-
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA-QTYP- 224 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~-~~~~- 224 (281)
....|+.+|.+.+.+.+.++.+ .|+++++++||.+.++......... ......... ...+
T Consensus 152 -------------~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~--~~~~~~~~~~~~~~~ 216 (275)
T PRK05876 152 -------------GLGAYGVAKYGVVGLAETLAREVTADGIGVSVLCPMVVETNLVANSERIR--GAACAQSSTTGSPGP 216 (275)
T ss_pred -------------CCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCccccccccchhhhc--Ccccccccccccccc
Confidence 1245999999977777777655 3899999999999887533210000 000000000 0111
Q ss_pred -CCCccceeHHHHHHHHHHhhcCCCCCccEEEecCCCCHHHHHHHHHH
Q 023515 225 -NVTFGWVNVKDVANAHIQAFEVPSANGRYCLVERVSHYSEIVNIIRE 271 (281)
Q Consensus 225 -~~~~~~i~~~D~a~~i~~~~~~~~~~g~~~~~~~~~t~~e~~~~i~~ 271 (281)
...+++++++|+|++++.++.+++ .|.+. +...+.++.+...+
T Consensus 217 ~~~~~~~~~~~dva~~~~~ai~~~~---~~~~~-~~~~~~~~~~~~~~ 260 (275)
T PRK05876 217 LPLQDDNLGVDDIAQLTADAILANR---LYVLP-HAASRASIRRRFER 260 (275)
T ss_pred ccccccCCCHHHHHHHHHHHHHcCC---eEEec-ChhhHHHHHHHHHH
Confidence 245678999999999999998664 34444 33344444444433
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-26 Score=189.86 Aligned_cols=225 Identities=18% Similarity=0.133 Sum_probs=161.3
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
++++|+|+||||+|+||++++++|+++|++|++++|+..+........... ..++.++.+|+.|++++.++++
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAA--GGKARARQVDVRDRAALKAAVAAGVED 80 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 456889999999999999999999999999999999865433322222111 2358899999999988888775
Q ss_pred --CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhC---CCccEEEEeccceee-ecCCCCCCCCeee
Q 023515 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAV-LNTGKPRTPDVVV 149 (281)
Q Consensus 81 --~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~-~~~~~~~~~~~~~ 149 (281)
++|+|||+++.... ...+.++..++.|+.++.++++++.+. .+.++||++||..++ .+.+
T Consensus 81 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~ss~~~~~~~~~--------- 151 (251)
T PRK12826 81 FGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGGGRIVLTSSVAGPRVGYP--------- 151 (251)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechHhhccCCC---------
Confidence 68999999986442 223445678999999999999998642 146789999997654 2100
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCC
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (281)
....|+.+|.+.+.+++.++.+ .|++++++||+.++||...+.... ..........+
T Consensus 152 -------------~~~~y~~sK~a~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~~--~~~~~~~~~~~----- 211 (251)
T PRK12826 152 -------------GLAHYAASKAGLVGFTRALALELAARNITVNSVHPGGVDTPMAGNLGDA--QWAEAIAAAIP----- 211 (251)
T ss_pred -------------CccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCCCCcchhhhcCch--HHHHHHHhcCC-----
Confidence 1234999999999999998765 489999999999999864332110 11111112111
Q ss_pred CccceeHHHHHHHHHHhhcCCCC--Cc-cEEEecCCCC
Q 023515 227 TFGWVNVKDVANAHIQAFEVPSA--NG-RYCLVERVSH 261 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~~--~g-~~~~~~~~~t 261 (281)
...+++++|+|++++.++..... .| .|++.++..+
T Consensus 212 ~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g~~~ 249 (251)
T PRK12826 212 LGRLGEPEDIAAAVLFLASDEARYITGQTLPVDGGATL 249 (251)
T ss_pred CCCCcCHHHHHHHHHHHhCccccCcCCcEEEECCCccC
Confidence 12588999999999998876432 34 5666654443
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.7e-26 Score=186.54 Aligned_cols=221 Identities=17% Similarity=0.160 Sum_probs=152.3
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC-cchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
+++++||||||+|+||++++++|+++|++|++++|+..+ .+.+....... ....+.++++|++|.+.+..+++
T Consensus 4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 82 (249)
T PRK09135 4 DSAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNAL-RPGSAAALQADLLDPDALPELVAACVAA 82 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhh-cCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999987532 22221111111 11358899999999988887776
Q ss_pred --CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC--CccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 --~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
++|+|||+||.... ...+.++..+++|+.++.++++++.+.+ ....+++++|..+..
T Consensus 83 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 148 (249)
T PRK09135 83 FGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITDIHAER-------------- 148 (249)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeChhhcC--------------
Confidence 57999999986321 1123356788999999999999998642 234566666533211
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc--CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCcc
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK--SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG 229 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (281)
+.. +...|+.+|.+.|.+++.+++++ +++++++||+.++||...... ..........+.+ ...
T Consensus 149 --~~~------~~~~Y~~sK~~~~~~~~~l~~~~~~~i~~~~v~pg~~~~~~~~~~~--~~~~~~~~~~~~~-----~~~ 213 (249)
T PRK09135 149 --PLK------GYPVYCAAKAALEMLTRSLALELAPEVRVNAVAPGAILWPEDGNSF--DEEARQAILARTP-----LKR 213 (249)
T ss_pred --CCC------CchhHHHHHHHHHHHHHHHHHHHCCCCeEEEEEeccccCccccccC--CHHHHHHHHhcCC-----cCC
Confidence 001 22459999999999999998875 699999999999999754321 1122222222221 122
Q ss_pred ceeHHHHHHHHHHhhcCCC-CCc-cEEEec
Q 023515 230 WVNVKDVANAHIQAFEVPS-ANG-RYCLVE 257 (281)
Q Consensus 230 ~i~~~D~a~~i~~~~~~~~-~~g-~~~~~~ 257 (281)
+.+++|+|+++.+++.+.. ..| .|++.+
T Consensus 214 ~~~~~d~a~~~~~~~~~~~~~~g~~~~i~~ 243 (249)
T PRK09135 214 IGTPEDIAEAVRFLLADASFITGQILAVDG 243 (249)
T ss_pred CcCHHHHHHHHHHHcCccccccCcEEEECC
Confidence 3468999999977775432 234 688764
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=188.83 Aligned_cols=239 Identities=19% Similarity=0.141 Sum_probs=168.9
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
|++|+++||||+|+||+++++.|+++|++|++++|+.++...............++.++.+|++|++++..+++
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWH 84 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 56899999999999999999999999999999999865443322221111112468889999999988877765
Q ss_pred -CCcEeEEecccCC------CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 -GCDGVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 -~~d~Vih~a~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|+|||+||... ....+.+...+++|+.++.++++++.+.+ +.++||++||..+..+.+
T Consensus 85 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~~~~~---------- 154 (276)
T PRK05875 85 GRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAASNTHR---------- 154 (276)
T ss_pred CCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcCCCC----------
Confidence 6899999998532 12223456788999999999999887642 345899999976643110
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
....|+.+|.+.|.+++.+++++ +++++++|||.+.++....... ............ ..
T Consensus 155 ------------~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~Pg~v~t~~~~~~~~-~~~~~~~~~~~~-----~~ 216 (276)
T PRK05875 155 ------------WFGAYGVTKSAVDHLMKLAADELGPSWVRVNSIRPGLIRTDLVAPITE-SPELSADYRACT-----PL 216 (276)
T ss_pred ------------CCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCccCCcccccccc-CHHHHHHHHcCC-----CC
Confidence 12459999999999999998765 6999999999998876432111 111111121111 12
Q ss_pred ccceeHHHHHHHHHHhhcCCCC--Cc-cEEEec-CCC----CHHHHHHHHHHhC
Q 023515 228 FGWVNVKDVANAHIQAFEVPSA--NG-RYCLVE-RVS----HYSEIVNIIRELY 273 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~~--~g-~~~~~~-~~~----t~~e~~~~i~~~~ 273 (281)
..+++++|+|+++.+++.++.. .| .+++.+ ..+ +..|+++.+....
T Consensus 217 ~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 270 (276)
T PRK05875 217 PRVGEVEDVANLAMFLLSDAASWITGQVINVDGGHMLRRGPDFSSMLEPVFGAD 270 (276)
T ss_pred CCCcCHHHHHHHHHHHcCchhcCcCCCEEEECCCeeccCCccHHHHHHHHhhHH
Confidence 3467899999999999987653 24 567653 343 7788887776543
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.9e-26 Score=188.01 Aligned_cols=223 Identities=17% Similarity=0.159 Sum_probs=159.4
Q ss_pred hccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 5 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
..+++|++|||||+|+||++++++|+++|++|++++|+.++...+....... ..++.++++|++|.+++.++++
T Consensus 6 ~~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~ 83 (255)
T PRK07523 6 FDLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQ--GLSAHALAFDVTDHDAVRAAIDAFEA 83 (255)
T ss_pred cCCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc--CceEEEEEccCCCHHHHHHHHHHHHH
Confidence 3467899999999999999999999999999999999865443332222111 2358889999999988888775
Q ss_pred ---CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeee
Q 023515 81 ---GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (281)
Q Consensus 81 ---~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (281)
++|+|||+||.... ...+.+++.+++|+.++.++++++.+.+ +.+++|++||.....+.+
T Consensus 84 ~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~~--------- 154 (255)
T PRK07523 84 EIGPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQSALARP--------- 154 (255)
T ss_pred hcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccchhccCCC---------
Confidence 47999999986322 1233456788899999999999998752 457899999975543111
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCC
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (281)
....|+.+|.+.+.+++.++.+ +|++++++|||.+.++....... ............ .
T Consensus 155 -------------~~~~y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~-~~~~~~~~~~~~-----~ 215 (255)
T PRK07523 155 -------------GIAPYTATKGAVGNLTKGMATDWAKHGLQCNAIAPGYFDTPLNAALVA-DPEFSAWLEKRT-----P 215 (255)
T ss_pred -------------CCccHHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcccCchhhhhcc-CHHHHHHHHhcC-----C
Confidence 1245999999999999998874 58999999999999886332111 111111121211 1
Q ss_pred CccceeHHHHHHHHHHhhcCCCC--Cc-cEEEec
Q 023515 227 TFGWVNVKDVANAHIQAFEVPSA--NG-RYCLVE 257 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~~--~g-~~~~~~ 257 (281)
...+.+++|+|.++++++..... .| .+++.+
T Consensus 216 ~~~~~~~~dva~~~~~l~~~~~~~~~G~~i~~~g 249 (255)
T PRK07523 216 AGRWGKVEELVGACVFLASDASSFVNGHVLYVDG 249 (255)
T ss_pred CCCCcCHHHHHHHHHHHcCchhcCccCcEEEECC
Confidence 23477999999999999986432 45 455543
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.4e-26 Score=188.87 Aligned_cols=221 Identities=17% Similarity=0.142 Sum_probs=160.0
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
++++++++||||+|+||+++++.|+++|++|++++|+......+.... ..++.++++|++|.+++..+++
T Consensus 3 ~l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (257)
T PRK07067 3 RLQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEI-----GPAAIAVSLDVTRQDSIDRIVAAAVER 77 (257)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh-----CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 466889999999999999999999999999999999875443332221 1358889999999988877765
Q ss_pred --CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC----CccEEEEeccceeeecCCCCCCCCeee
Q 023515 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP----SIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (281)
Q Consensus 81 --~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (281)
++|++||+||.... ...+.++..+++|+.++.++++++.+.+ ...+||++||.....+.+
T Consensus 78 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~--------- 148 (257)
T PRK07067 78 FGGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGRRGEA--------- 148 (257)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhCCCCC---------
Confidence 57999999986321 1234566889999999999999998642 125799999976544211
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCc-------cHHHHHHHHhC
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNT-------SAAAVLSLIKG 219 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~-------~~~~~~~~~~~ 219 (281)
....|+.+|.+.+.+++.++.+ .|+++++++||.++|+........ ...........
T Consensus 149 -------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (257)
T PRK07067 149 -------------LVSHYCATKAAVISYTQSAALALIRHGINVNAIAPGVVDTPMWDQVDALFARYENRPPGEKKRLVGE 215 (257)
T ss_pred -------------CCchhhhhHHHHHHHHHHHHHHhcccCeEEEEEeeCcccchhhhhhhhhhhhccCCCHHHHHHHHhh
Confidence 1245999999999999998875 589999999999999853321000 00001111110
Q ss_pred CCCCCCCCccceeHHHHHHHHHHhhcCCCC--Cc-cEEEec
Q 023515 220 AQTYPNVTFGWVNVKDVANAHIQAFEVPSA--NG-RYCLVE 257 (281)
Q Consensus 220 ~~~~~~~~~~~i~~~D~a~~i~~~~~~~~~--~g-~~~~~~ 257 (281)
+.....+++++|+|+++.+++..... .| .|++.+
T Consensus 216 ----~~~~~~~~~~~dva~~~~~l~s~~~~~~~g~~~~v~g 252 (257)
T PRK07067 216 ----AVPLGRMGVPDDLTGMALFLASADADYIVAQTYNVDG 252 (257)
T ss_pred ----cCCCCCccCHHHHHHHHHHHhCcccccccCcEEeecC
Confidence 12345789999999999999986543 34 677654
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=185.91 Aligned_cols=219 Identities=18% Similarity=0.179 Sum_probs=159.9
Q ss_pred hccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 5 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
..+++|+++||||+|+||++++++|+++|++|++++|.......+.+..... ..++.++.+|+++.+++.++++
T Consensus 2 ~~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (250)
T PRK07774 2 GRFDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVAD--GGTAIAVQVDVSDPDSAKAMADATVS 79 (250)
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 3466899999999999999999999999999999999865443333322111 2357889999999988777665
Q ss_pred ---CCcEeEEecccCCC--------CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCC
Q 023515 81 ---GCDGVCHTASPFYH--------DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPD 146 (281)
Q Consensus 81 ---~~d~Vih~a~~~~~--------~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~ 146 (281)
.+|+|||+||.... ...+.+++.+++|+.++.++++++.+.+ +.++||++||..++.+
T Consensus 80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~-------- 151 (250)
T PRK07774 80 AFGGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSSTAAWLY-------- 151 (250)
T ss_pred HhCCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEecccccCC--------
Confidence 58999999996421 1123355778999999999999999752 3468999999866531
Q ss_pred eeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCC
Q 023515 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY 223 (281)
Q Consensus 147 ~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~ 223 (281)
.+.|+.+|++.|.+++.+++++ |+++++++||.+.++...... ..........+.+
T Consensus 152 -----------------~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~--~~~~~~~~~~~~~-- 210 (250)
T PRK07774 152 -----------------SNFYGLAKVGLNGLTQQLARELGGMNIRVNAIAPGPIDTEATRTVT--PKEFVADMVKGIP-- 210 (250)
T ss_pred -----------------ccccHHHHHHHHHHHHHHHHHhCccCeEEEEEecCcccCccccccC--CHHHHHHHHhcCC--
Confidence 1349999999999999998875 799999999999887643211 1222333333322
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCC--CCc-cEEEec
Q 023515 224 PNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (281)
Q Consensus 224 ~~~~~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~ 257 (281)
...+.+++|+|++++.++.... ..| .|++.+
T Consensus 211 ---~~~~~~~~d~a~~~~~~~~~~~~~~~g~~~~v~~ 244 (250)
T PRK07774 211 ---LSRMGTPEDLVGMCLFLLSDEASWITGQIFNVDG 244 (250)
T ss_pred ---CCCCcCHHHHHHHHHHHhChhhhCcCCCEEEECC
Confidence 1225689999999999998643 234 667654
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-25 Score=203.72 Aligned_cols=202 Identities=20% Similarity=0.217 Sum_probs=149.9
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEec
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a 89 (281)
|+||||||+||||++++++|+++|++|++++|.+.... ..+++++++|++++. +.++++++|+|||+|
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~~~-----------~~~ve~v~~Dl~d~~-l~~al~~~D~VIHLA 68 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHDAL-----------DPRVDYVCASLRNPV-LQELAGEADAVIHLA 68 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhhcc-----------cCCceEEEccCCCHH-HHHHhcCCCEEEEcC
Confidence 37999999999999999999999999999998653210 136889999999874 777888999999999
Q ss_pred ccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchhhh
Q 023515 90 SPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPL 169 (281)
Q Consensus 90 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~ 169 (281)
+.... ...++|+.++.+++++|++. ++ ++||+||.. +.+ ..|.
T Consensus 69 a~~~~-------~~~~vNv~Gt~nLleAA~~~-Gv-RiV~~SS~~---G~~------------------------~~~~- 111 (699)
T PRK12320 69 PVDTS-------APGGVGITGLAHVANAAARA-GA-RLLFVSQAA---GRP------------------------ELYR- 111 (699)
T ss_pred ccCcc-------chhhHHHHHHHHHHHHHHHc-CC-eEEEEECCC---CCC------------------------cccc-
Confidence 86321 12258999999999999998 66 799999852 111 0132
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCC-ccHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC
Q 023515 170 SKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLN-TSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS 248 (281)
Q Consensus 170 sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~ 248 (281)
.+|.++. .++++++++|++++|||....... .+...+.....+ +...++|++|++++++.+++.+.
T Consensus 112 ---~aE~ll~----~~~~p~~ILR~~nVYGp~~~~~~~r~I~~~l~~~~~~------~pI~vIyVdDvv~alv~al~~~~ 178 (699)
T PRK12320 112 ---QAETLVS----TGWAPSLVIRIAPPVGRQLDWMVCRTVATLLRSKVSA------RPIRVLHLDDLVRFLVLALNTDR 178 (699)
T ss_pred ---HHHHHHH----hcCCCEEEEeCceecCCCCcccHhHHHHHHHHHHHcC------CceEEEEHHHHHHHHHHHHhCCC
Confidence 3566553 356999999999999996543211 112222222222 34456899999999999998643
Q ss_pred CCccEEEe-cCCCCHHHHHHHHHHhCC
Q 023515 249 ANGRYCLV-ERVSHYSEIVNIIRELYP 274 (281)
Q Consensus 249 ~~g~~~~~-~~~~t~~e~~~~i~~~~~ 274 (281)
.|+||++ ++.+|+.|+++.+....+
T Consensus 179 -~GiyNIG~~~~~Si~el~~~i~~~~p 204 (699)
T PRK12320 179 -NGVVDLATPDTTNVVTAWRLLRSVDP 204 (699)
T ss_pred -CCEEEEeCCCeeEHHHHHHHHHHhCC
Confidence 5699997 578999999999988754
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-25 Score=187.20 Aligned_cols=224 Identities=15% Similarity=0.149 Sum_probs=159.2
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++++++||||+|+||++++++|+++|++|++++|++++...+...... ...++.++.+|++|++++.++++
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQK--AGGKAIGVAMDVTDEEAINAGIDYAVETF 79 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4578999999999999999999999999999999987655443332221 12468899999999998877765
Q ss_pred -CCcEeEEecccCCCC-----CCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 -GCDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 -~~d~Vih~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
++|+|||+|+..... ..+.++..+++|+.++.++++.+.+.+ +.++||++||..++++.+
T Consensus 80 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~~~~----------- 148 (258)
T PRK12429 80 GGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGGGRIINMASVHGLVGSA----------- 148 (258)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCeEEEEEcchhhccCCC-----------
Confidence 589999999863221 223355678899999777777776531 567999999987665321
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCc--------cHHHHHHHHhCC
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNT--------SAAAVLSLIKGA 220 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~--------~~~~~~~~~~~~ 220 (281)
..+.|+.+|.+.+.+++.++.+. +++++++|||.+++|........ ...........
T Consensus 149 -----------~~~~y~~~k~a~~~~~~~l~~~~~~~~i~v~~~~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 216 (258)
T PRK12429 149 -----------GKAAYVSAKHGLIGLTKVVALEGATHGVTVNAICPGYVDTPLVRKQIPDLAKERGISEEEVLEDVLLP- 216 (258)
T ss_pred -----------CcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCcchhhhhhhhhhccccCCChHHHHHHHHhc-
Confidence 12459999999999999887653 79999999999999864321100 00011111111
Q ss_pred CCCCCCCccceeHHHHHHHHHHhhcCCCC--Cc-cEEEecC
Q 023515 221 QTYPNVTFGWVNVKDVANAHIQAFEVPSA--NG-RYCLVER 258 (281)
Q Consensus 221 ~~~~~~~~~~i~~~D~a~~i~~~~~~~~~--~g-~~~~~~~ 258 (281)
....+.|++++|+|+++++++..... .| .|++.++
T Consensus 217 ---~~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g 254 (258)
T PRK12429 217 ---LVPQKRFTTVEEIADYALFLASFAAKGVTGQAWVVDGG 254 (258)
T ss_pred ---cCCccccCCHHHHHHHHHHHcCccccCccCCeEEeCCC
Confidence 12345799999999999999976432 35 4555543
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8e-26 Score=183.35 Aligned_cols=208 Identities=18% Similarity=0.214 Sum_probs=163.0
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++++++|||||++||.+++++|+++|++|+++.|+.++.+.+.+..+... ...+.++.+|+++++++..+.+
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~-~v~v~vi~~DLs~~~~~~~l~~~l~~~ 81 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKT-GVEVEVIPADLSDPEALERLEDELKER 81 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhh-CceEEEEECcCCChhHHHHHHHHHHhc
Confidence 3558899999999999999999999999999999999988877766554433 3568899999999988887764
Q ss_pred --CCcEeEEeccc-----CCCCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 --GCDGVCHTASP-----FYHDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 --~~d~Vih~a~~-----~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
.+|++|||||. +.+...+..++++++|+.++..|.++..+.| +.+++|+++|..++...+
T Consensus 82 ~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~ag~~p~p---------- 151 (265)
T COG0300 82 GGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSAAGLIPTP---------- 151 (265)
T ss_pred CCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechhhcCCCc----------
Confidence 58999999985 2233334456999999999999999999853 457899999998875111
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCC-CCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY-PNV 226 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 226 (281)
..+.|++||+..-.+.+.+..+. |+.++++.||.+.+++.... +.... ...
T Consensus 152 ------------~~avY~ATKa~v~~fSeaL~~EL~~~gV~V~~v~PG~~~T~f~~~~-------------~~~~~~~~~ 206 (265)
T COG0300 152 ------------YMAVYSATKAFVLSFSEALREELKGTGVKVTAVCPGPTRTEFFDAK-------------GSDVYLLSP 206 (265)
T ss_pred ------------chHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEecCcccccccccc-------------ccccccccc
Confidence 23559999999998888887663 89999999999998774311 00000 012
Q ss_pred CccceeHHHHHHHHHHhhcCCCC
Q 023515 227 TFGWVNVKDVANAHIQAFEVPSA 249 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~~ 249 (281)
.+-++.++|+|+..+..+++.+.
T Consensus 207 ~~~~~~~~~va~~~~~~l~~~k~ 229 (265)
T COG0300 207 GELVLSPEDVAEAALKALEKGKR 229 (265)
T ss_pred hhhccCHHHHHHHHHHHHhcCCc
Confidence 34478999999999999998764
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.2e-26 Score=186.04 Aligned_cols=221 Identities=19% Similarity=0.184 Sum_probs=160.2
Q ss_pred CcchhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc
Q 023515 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (281)
Q Consensus 1 ~~~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 80 (281)
|+++..+++++++||||+|+||+++++.|+++|++|++++|+.++...+... .+..++++|+++.+.+.++++
T Consensus 1 ~~~~~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~-------~~~~~~~~D~~~~~~v~~~~~ 73 (245)
T PRK07060 1 MNMAFDFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGE-------TGCEPLRLDVGDDAAIRAALA 73 (245)
T ss_pred CCcccccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------hCCeEEEecCCCHHHHHHHHH
Confidence 5555557789999999999999999999999999999999986543332221 135678899999888888776
Q ss_pred ---CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC----CccEEEEeccceeeecCCCCCCCCee
Q 023515 81 ---GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP----SIKRVVLTSSMAAVLNTGKPRTPDVV 148 (281)
Q Consensus 81 ---~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (281)
++|+|||+||.... ...+.+++.+++|+.++.++++++.+.+ ..++||++||..++++.+
T Consensus 74 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~-------- 145 (245)
T PRK07060 74 AAGAFDGLVNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAALVGLP-------- 145 (245)
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcCCCC--------
Confidence 58999999986322 1233456778899999999999998742 136899999987665221
Q ss_pred eecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCC
Q 023515 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (281)
Q Consensus 149 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (281)
....|+.+|.+.|.+++.++.++ +++++.+|||.++++.....+.. ...........
T Consensus 146 --------------~~~~y~~sK~a~~~~~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~-~~~~~~~~~~~----- 205 (245)
T PRK07060 146 --------------DHLAYCASKAALDAITRVLCVELGPHGIRVNSVNPTVTLTPMAAEAWSD-PQKSGPMLAAI----- 205 (245)
T ss_pred --------------CCcHhHHHHHHHHHHHHHHHHHHhhhCeEEEEEeeCCCCCchhhhhccC-HHHHHHHHhcC-----
Confidence 12349999999999999988753 89999999999998864322211 11111122211
Q ss_pred CCccceeHHHHHHHHHHhhcCCCC--CccEEEe
Q 023515 226 VTFGWVNVKDVANAHIQAFEVPSA--NGRYCLV 256 (281)
Q Consensus 226 ~~~~~i~~~D~a~~i~~~~~~~~~--~g~~~~~ 256 (281)
....|++++|+|+++++++..+.. .|.++..
T Consensus 206 ~~~~~~~~~d~a~~~~~l~~~~~~~~~G~~~~~ 238 (245)
T PRK07060 206 PLGRFAEVDDVAAPILFLLSDAASMVSGVSLPV 238 (245)
T ss_pred CCCCCCCHHHHHHHHHHHcCcccCCccCcEEeE
Confidence 134589999999999999986543 3544433
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-25 Score=188.09 Aligned_cols=222 Identities=14% Similarity=0.112 Sum_probs=159.5
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCc--chhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP--KKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
.+++|++|||||+|+||++++++|+++|++|++..|+.... +.+..+.... ..++.++++|+++.++++++++
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~ 129 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAE--GRKAVALPGDLKDEAFCRQLVERAV 129 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHHHHH
Confidence 35679999999999999999999999999999887754322 2222222111 2467889999999988777764
Q ss_pred ----CCcEeEEecccCC------CCCCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCCCCCeee
Q 023515 81 ----GCDGVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (281)
Q Consensus 81 ----~~d~Vih~a~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (281)
++|+||||||... +...+.++..+++|+.++.++++++.+.+ ..++||++||..++.+.+
T Consensus 130 ~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~~--------- 200 (300)
T PRK06128 130 KELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQPSP--------- 200 (300)
T ss_pred HHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCccccCCCC---------
Confidence 6899999998632 12234577899999999999999999763 235899999987764211
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCC
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (281)
....|+.+|.+.+.+++.++++ .|+++++++||.+.+|..... .............. .
T Consensus 201 -------------~~~~Y~asK~a~~~~~~~la~el~~~gI~v~~v~PG~i~t~~~~~~-~~~~~~~~~~~~~~-----p 261 (300)
T PRK06128 201 -------------TLLDYASTKAAIVAFTKALAKQVAEKGIRVNAVAPGPVWTPLQPSG-GQPPEKIPDFGSET-----P 261 (300)
T ss_pred -------------CchhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEECcCcCCCcccC-CCCHHHHHHHhcCC-----C
Confidence 1134999999999999999876 489999999999999864321 11122222221111 1
Q ss_pred CccceeHHHHHHHHHHhhcCCCC--Cc-cEEEec
Q 023515 227 TFGWVNVKDVANAHIQAFEVPSA--NG-RYCLVE 257 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~~--~g-~~~~~~ 257 (281)
...+.+++|+|.++++++..... .| .|++.+
T Consensus 262 ~~r~~~p~dva~~~~~l~s~~~~~~~G~~~~v~g 295 (300)
T PRK06128 262 MKRPGQPVEMAPLYVLLASQESSYVTGEVFGVTG 295 (300)
T ss_pred CCCCcCHHHHHHHHHHHhCccccCccCcEEeeCC
Confidence 23467999999999999876432 35 555554
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-25 Score=183.96 Aligned_cols=220 Identities=18% Similarity=0.163 Sum_probs=157.4
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcc-hhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPK-KTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
.+++|+||||||||+||++++++|+++|++|+++.|+..+.. .+...... ...++.++++|+++++++.++++
T Consensus 3 ~~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~v~~~~~~~~~ 80 (249)
T PRK12825 3 SLMGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEA--LGRRAQAVQADVTDKAALEAAVAAAVE 80 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHh--cCCceEEEECCcCCHHHHHHHHHHHHH
Confidence 355789999999999999999999999999988777754321 12111111 12468899999999988887764
Q ss_pred ---CCcEeEEecccCCCC-----CCCccchhhhhHHHHHHHHHHHhhhC---CCccEEEEeccceeeecCCCCCCCCeee
Q 023515 81 ---GCDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (281)
Q Consensus 81 ---~~d~Vih~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (281)
++|+|||+||..... ..+.++..+++|+.++.++++.+.+. .+.++||++||..++.+..
T Consensus 81 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~i~~SS~~~~~~~~--------- 151 (249)
T PRK12825 81 RFGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRGGRIVNISSVAGLPGWP--------- 151 (249)
T ss_pred HcCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECccccCCCCC---------
Confidence 579999999853221 23345678899999999999998532 2568999999987764221
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCC
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (281)
....|+.+|.+.+.+++.++++ .+++++++|||.++|+....... ...... .+. ..
T Consensus 152 -------------~~~~y~~sK~~~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~--~~~~~~----~~~--~~ 210 (249)
T PRK12825 152 -------------GRSNYAAAKAGLVGLTKALARELAEYGITVNMVAPGDIDTDMKEATIE--EAREAK----DAE--TP 210 (249)
T ss_pred -------------CchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCccCCccccccc--hhHHhh----hcc--CC
Confidence 1234999999999999888775 58999999999999987543211 111111 100 11
Q ss_pred CccceeHHHHHHHHHHhhcCCCC--Cc-cEEEec
Q 023515 227 TFGWVNVKDVANAHIQAFEVPSA--NG-RYCLVE 257 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~~--~g-~~~~~~ 257 (281)
...+++++|+++++.+++++... .| .|++.+
T Consensus 211 ~~~~~~~~dva~~~~~~~~~~~~~~~g~~~~i~~ 244 (249)
T PRK12825 211 LGRSGTPEDIARAVAFLCSDASDYITGQVIEVTG 244 (249)
T ss_pred CCCCcCHHHHHHHHHHHhCccccCcCCCEEEeCC
Confidence 22389999999999999976532 35 666654
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-25 Score=184.39 Aligned_cols=220 Identities=15% Similarity=0.051 Sum_probs=153.1
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++|+++||||+|+||++++++|+++|++|++++|+... ..+..... ....++.++++|+++.+++.++++
T Consensus 6 ~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~-~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (260)
T PRK12823 6 FAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELV-HEVAAELR--AAGGEALALTADLETYAGAQAAMAAAVEAF 82 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHH-HHHHHHHH--hcCCeEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence 568999999999999999999999999999999997421 11111111 112467889999999887777665
Q ss_pred -CCcEeEEecccC------CCCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 -GCDGVCHTASPF------YHDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 -~~d~Vih~a~~~------~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|++|||||.. .....+.++..+++|+.++..+++.+.+.+ +.++||++||..++. .
T Consensus 83 ~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~-~----------- 150 (260)
T PRK12823 83 GRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGGGAIVNVSSIATRG-I----------- 150 (260)
T ss_pred CCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEcCccccC-C-----------
Confidence 689999999842 112334466788999999998887777532 456899999976532 1
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCC---------CCCCc-cHHHHHHHH
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQ---------PTLNT-SAAAVLSLI 217 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~---------~~~~~-~~~~~~~~~ 217 (281)
....|+.+|++.+.+++.++.++ |+++++++||.+++|... ..... ....+.+..
T Consensus 151 ------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (260)
T PRK12823 151 ------------NRVPYSAAKGGVNALTASLAFEYAEHGIRVNAVAPGGTEAPPRRVPRNAAPQSEQEKAWYQQIVDQTL 218 (260)
T ss_pred ------------CCCccHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccCCcchhhHHhhccccccccccHHHHHHHHh
Confidence 01349999999999999998775 899999999999997411 00000 111122222
Q ss_pred hCCCCCCCCCccceeHHHHHHHHHHhhcCCCC--Cc-cEEEecC
Q 023515 218 KGAQTYPNVTFGWVNVKDVANAHIQAFEVPSA--NG-RYCLVER 258 (281)
Q Consensus 218 ~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~~--~g-~~~~~~~ 258 (281)
... ....+.+++|+|+++++++..... .| .+++.++
T Consensus 219 ~~~-----~~~~~~~~~dva~~~~~l~s~~~~~~~g~~~~v~gg 257 (260)
T PRK12823 219 DSS-----LMKRYGTIDEQVAAILFLASDEASYITGTVLPVGGG 257 (260)
T ss_pred ccC-----CcccCCCHHHHHHHHHHHcCcccccccCcEEeecCC
Confidence 211 122356899999999999976432 45 5555443
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-25 Score=183.09 Aligned_cols=226 Identities=15% Similarity=0.147 Sum_probs=162.8
Q ss_pred CcchhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc
Q 023515 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (281)
Q Consensus 1 ~~~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 80 (281)
|++++.+.+|++|||||+|+||++++++|+++|++|++++|+..+...+....... ..++.++.+|++|++.+.++++
T Consensus 1 ~~~~~~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~~~~ 78 (254)
T PRK08085 1 MNDLFSLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQE--GIKAHAAPFNVTHKQEVEAAIE 78 (254)
T ss_pred CcccccCCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhc--CCeEEEEecCCCCHHHHHHHHH
Confidence 56666677899999999999999999999999999999999865544333222111 2357788999999988887764
Q ss_pred -------CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCC
Q 023515 81 -------GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTP 145 (281)
Q Consensus 81 -------~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~ 145 (281)
++|+|||+||... ....+.|+..+++|+.++..+++++.+.+ +.++||++||..+..+.+
T Consensus 79 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~----- 153 (254)
T PRK08085 79 HIEKDIGPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICSMQSELGRD----- 153 (254)
T ss_pred HHHHhcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccchhccCCC-----
Confidence 5899999998532 22345577899999999999999988642 346899999976544211
Q ss_pred CeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCC
Q 023515 146 DVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT 222 (281)
Q Consensus 146 ~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~ 222 (281)
....|+.+|++.+.+++.++.++ |+++++++||.+.++....... ............
T Consensus 154 -----------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pG~~~t~~~~~~~~-~~~~~~~~~~~~-- 213 (254)
T PRK08085 154 -----------------TITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVE-DEAFTAWLCKRT-- 213 (254)
T ss_pred -----------------CCcchHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCCCCCcchhhhcc-CHHHHHHHHhcC--
Confidence 12349999999999999998764 8999999999999886432111 111111111111
Q ss_pred CCCCCccceeHHHHHHHHHHhhcCCC--CCccEEEe
Q 023515 223 YPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLV 256 (281)
Q Consensus 223 ~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~ 256 (281)
....+..++|+|.++.+++.... -.|+....
T Consensus 214 ---p~~~~~~~~~va~~~~~l~~~~~~~i~G~~i~~ 246 (254)
T PRK08085 214 ---PAARWGDPQELIGAAVFLSSKASDFVNGHLLFV 246 (254)
T ss_pred ---CCCCCcCHHHHHHHHHHHhCccccCCcCCEEEE
Confidence 12347799999999999998543 24544443
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.1e-25 Score=221.17 Aligned_cols=258 Identities=22% Similarity=0.259 Sum_probs=180.7
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCC----CEEEEEEcCCCCcchhhhhhhc--------cCCCCcEEEEEcCCCCc----
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRG----YTVKASVRDPNDPKKTRHLLAL--------DGASERLQLFKANLLEE---- 72 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g----~~V~~~~r~~~~~~~~~~~~~~--------~~~~~~~~~~~~D~~~~---- 72 (281)
.++|+|||||||||++++++|++++ ++|+++.|.........++... .....+++++.+|++++
T Consensus 971 ~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lgl 1050 (1389)
T TIGR03443 971 PITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFGL 1050 (1389)
T ss_pred CceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCccCCc
Confidence 5789999999999999999999887 8899999976544333222110 00113689999999754
Q ss_pred --CcHHHHhcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCC-------
Q 023515 73 --GSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPR------- 143 (281)
Q Consensus 73 --~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~------- 143 (281)
+.+..+.+++|+|||+|+.... ..++....+.|+.|+.+++++|.+. +.++|+|+||.+++....-..
T Consensus 1051 ~~~~~~~l~~~~d~iiH~Aa~~~~--~~~~~~~~~~nv~gt~~ll~~a~~~-~~~~~v~vSS~~v~~~~~~~~~~~~~~~ 1127 (1389)
T TIGR03443 1051 SDEKWSDLTNEVDVIIHNGALVHW--VYPYSKLRDANVIGTINVLNLCAEG-KAKQFSFVSSTSALDTEYYVNLSDELVQ 1127 (1389)
T ss_pred CHHHHHHHHhcCCEEEECCcEecC--ccCHHHHHHhHHHHHHHHHHHHHhC-CCceEEEEeCeeecCcccccchhhhhhh
Confidence 3456667789999999997653 3445566678999999999999987 788999999987764210000
Q ss_pred CCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHh-----
Q 023515 144 TPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIK----- 218 (281)
Q Consensus 144 ~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~----- 218 (281)
.....+.|+.+..+. +....++|+.||+.+|.++..+.+ .|++++++||+.|||+....... ....+..+..
T Consensus 1128 ~~~~~~~e~~~~~~~-~~~~~~~Y~~sK~~aE~l~~~~~~-~g~~~~i~Rpg~v~G~~~~g~~~-~~~~~~~~~~~~~~~ 1204 (1389)
T TIGR03443 1128 AGGAGIPESDDLMGS-SKGLGTGYGQSKWVAEYIIREAGK-RGLRGCIVRPGYVTGDSKTGATN-TDDFLLRMLKGCIQL 1204 (1389)
T ss_pred ccCCCCCcccccccc-cccCCCChHHHHHHHHHHHHHHHh-CCCCEEEECCCccccCCCcCCCC-chhHHHHHHHHHHHh
Confidence 001123333322111 111235699999999999988765 49999999999999997554332 2223333222
Q ss_pred CCCCCCCCCccceeHHHHHHHHHHhhcCCCC--C-ccEEEec-CCCCHHHHHHHHHHh
Q 023515 219 GAQTYPNVTFGWVNVKDVANAHIQAFEVPSA--N-GRYCLVE-RVSHYSEIVNIIREL 272 (281)
Q Consensus 219 ~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~~--~-g~~~~~~-~~~t~~e~~~~i~~~ 272 (281)
+......+.++|++++|+|++++.++.++.. . .+||+++ ..+++.++++.+.+.
T Consensus 1205 ~~~p~~~~~~~~~~Vddva~ai~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~ 1262 (1389)
T TIGR03443 1205 GLIPNINNTVNMVPVDHVARVVVAAALNPPKESELAVAHVTGHPRIRFNDFLGTLKTY 1262 (1389)
T ss_pred CCcCCCCCccccccHHHHHHHHHHHHhCCcccCCCCEEEeCCCCCCcHHHHHHHHHHh
Confidence 2212235578999999999999999876542 2 2788875 578999999999765
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-25 Score=182.11 Aligned_cols=222 Identities=12% Similarity=0.121 Sum_probs=158.7
Q ss_pred hccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC-CcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN-DPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 5 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
.++++++++||||+|+||++++++|+++|++|+++.++.. ..+.+..... ....++.++.+|+++++.+.++++
T Consensus 2 ~~~~~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~D~~~~~~~~~~~~~~~ 79 (247)
T PRK12935 2 VQLNGKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELG--KEGHDVYAVQADVSKVEDANRLVEEAV 79 (247)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHH--hcCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 3456899999999999999999999999999987665432 2222111111 112468999999999988888776
Q ss_pred ----CCcEeEEecccCCCC-----CCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCee
Q 023515 81 ----GCDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVV 148 (281)
Q Consensus 81 ----~~d~Vih~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (281)
.+|+|||+||..... ..+.+++.+++|+.++.++++++.+.+ +.+++|++||..+..+..
T Consensus 80 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~-------- 151 (247)
T PRK12935 80 NHFGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISSIIGQAGGF-------- 151 (247)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchhhcCCCC--------
Confidence 379999999873321 124566889999999999999998641 346899999976654211
Q ss_pred eecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCC
Q 023515 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (281)
Q Consensus 149 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (281)
....|+.+|.+.+.+++.++.++ ++++++++||.+.++..... ..........+.
T Consensus 152 --------------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~---~~~~~~~~~~~~----- 209 (247)
T PRK12935 152 --------------GQTNYSAAKAGMLGFTKSLALELAKTNVTVNAICPGFIDTEMVAEV---PEEVRQKIVAKI----- 209 (247)
T ss_pred --------------CCcchHHHHHHHHHHHHHHHHHHHHcCcEEEEEEeCCCcChhhhhc---cHHHHHHHHHhC-----
Confidence 12349999999999998887754 89999999999987653221 111122222221
Q ss_pred CCccceeHHHHHHHHHHhhcCCC--CCccEEEecC
Q 023515 226 VTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVER 258 (281)
Q Consensus 226 ~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~~ 258 (281)
..+.+.+++|++++++++++... .+..|++.++
T Consensus 210 ~~~~~~~~edva~~~~~~~~~~~~~~g~~~~i~~g 244 (247)
T PRK12935 210 PKKRFGQADEIAKGVVYLCRDGAYITGQQLNINGG 244 (247)
T ss_pred CCCCCcCHHHHHHHHHHHcCcccCccCCEEEeCCC
Confidence 34568999999999999997542 2347777654
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=184.94 Aligned_cols=225 Identities=15% Similarity=0.085 Sum_probs=155.5
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC-cchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
.+++++||||||+|+||++++++|+++|++|++..|+... ....... ......++.++.+|+++++++..+++
T Consensus 3 ~~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (252)
T PRK06077 3 SLKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKM--VKENGGEGIGVLADVSTREGCETLAKATID 80 (252)
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHH--HHHcCCeeEEEEeccCCHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999887765422 1111111 11112357788999999988777665
Q ss_pred ---CCcEeEEecccCC--C---CCCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 ---GCDGVCHTASPFY--H---DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 ---~~d~Vih~a~~~~--~---~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
++|+|||+||... . ...+.++..+++|+.++.++++++.+.+ ..++||++||..++.+.+
T Consensus 81 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~----------- 149 (252)
T PRK06077 81 RYGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAGIRPAY----------- 149 (252)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhccCCCC-----------
Confidence 6799999998622 1 1122345778999999999999999752 235899999987654111
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc--CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCcc
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK--SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG 229 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (281)
+.+.|+.+|.+.|.+++.+++++ ++++.+++||.+.++.................... .....
T Consensus 150 -----------~~~~Y~~sK~~~~~~~~~l~~~~~~~i~v~~v~Pg~i~t~~~~~~~~~~~~~~~~~~~~~----~~~~~ 214 (252)
T PRK06077 150 -----------GLSIYGAMKAAVINLTKYLALELAPKIRVNAIAPGFVKTKLGESLFKVLGMSEKEFAEKF----TLMGK 214 (252)
T ss_pred -----------CchHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeCCccChHHHhhhhcccccHHHHHHhc----CcCCC
Confidence 12459999999999999998875 78999999999988752211000000001111111 12336
Q ss_pred ceeHHHHHHHHHHhhcCCCCCc-cEEEecC
Q 023515 230 WVNVKDVANAHIQAFEVPSANG-RYCLVER 258 (281)
Q Consensus 230 ~i~~~D~a~~i~~~~~~~~~~g-~~~~~~~ 258 (281)
+++++|+|+++++++..+...| .|++.++
T Consensus 215 ~~~~~dva~~~~~~~~~~~~~g~~~~i~~g 244 (252)
T PRK06077 215 ILDPEEVAEFVAAILKIESITGQVFVLDSG 244 (252)
T ss_pred CCCHHHHHHHHHHHhCccccCCCeEEecCC
Confidence 8999999999999997655444 7777643
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-25 Score=182.86 Aligned_cols=231 Identities=17% Similarity=0.091 Sum_probs=165.5
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------C
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------G 81 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~ 81 (281)
+++++||||+|+||++++++|+++|++|++++|+..+.+.+.... ...++.++++|+.|.+.+..+++ +
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 77 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADAL----GDARFVPVACDLTDAASLAAALANAAAERGP 77 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----cCCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 578999999999999999999999999999999865543332221 12368899999999998877665 4
Q ss_pred CcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhC---CCccEEEEeccceeeecCCCCCCCCeeeecCC
Q 023515 82 CDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (281)
Q Consensus 82 ~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~ 153 (281)
+|+|||+||.... ...+.+...+++|+.++.++++++.+. .+.++||++||.......+
T Consensus 78 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~------------- 144 (257)
T PRK07074 78 VDVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGSVNGMAALG------------- 144 (257)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcCCCC-------------
Confidence 8999999986322 112234466789999999999999653 1456899999964431000
Q ss_pred CCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccc
Q 023515 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGW 230 (281)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (281)
...|+.+|.+.+.+++.+++++ |+++++++||.++++................... ....+|
T Consensus 145 ----------~~~y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 209 (257)
T PRK07074 145 ----------HPAYSAAKAGLIHYTKLLAVEYGRFGIRANAVAPGTVKTQAWEARVAANPQVFEELKKW-----YPLQDF 209 (257)
T ss_pred ----------CcccHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCCcchhhcccccChHHHHHHHhc-----CCCCCC
Confidence 1239999999999999998765 7999999999999876332111122222222221 124679
Q ss_pred eeHHHHHHHHHHhhcCCC--CCccE-EEec-CCCCHHHHHHHHHH
Q 023515 231 VNVKDVANAHIQAFEVPS--ANGRY-CLVE-RVSHYSEIVNIIRE 271 (281)
Q Consensus 231 i~~~D~a~~i~~~~~~~~--~~g~~-~~~~-~~~t~~e~~~~i~~ 271 (281)
++++|+++++++++.+.. ..|++ ++.+ ...+.+|+.+.+.+
T Consensus 210 ~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~ 254 (257)
T PRK07074 210 ATPDDVANAVLFLASPAARAITGVCLPVDGGLTAGNREMARTLTL 254 (257)
T ss_pred CCHHHHHHHHHHHcCchhcCcCCcEEEeCCCcCcCChhhhhhhcc
Confidence 999999999999997532 24654 4443 56678999887754
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-25 Score=183.70 Aligned_cols=226 Identities=22% Similarity=0.208 Sum_probs=155.7
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++|+|+||||+|+||++++++|+++|++|++++|++++.+.+............+.++++|++|++++.++++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 81 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKY 81 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence 45899999999999999999999999999999999876544432222111112346778999999998888776
Q ss_pred -CCcEeEEecccCC--------CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCee
Q 023515 81 -GCDGVCHTASPFY--------HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVV 148 (281)
Q Consensus 81 -~~d~Vih~a~~~~--------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (281)
++|+|||||+... ....+.++..+++|+.++..+++++.+.+ +.++||++||..++.... ..
T Consensus 82 ~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~------~~ 155 (256)
T PRK09186 82 GKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGNLVNISSIYGVVAPK------FE 155 (256)
T ss_pred CCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCceEEEEechhhhcccc------ch
Confidence 3899999997422 11123356778999999998888887642 457999999977654211 11
Q ss_pred eecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCC
Q 023515 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (281)
Q Consensus 149 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (281)
..++.+.. ....|+.+|.+.+.+++.++.+ .++++++++||.++++.. .. +........
T Consensus 156 ~~~~~~~~------~~~~Y~~sK~a~~~l~~~la~e~~~~~i~v~~i~Pg~~~~~~~-------~~-~~~~~~~~~---- 217 (256)
T PRK09186 156 IYEGTSMT------SPVEYAAIKAGIIHLTKYLAKYFKDSNIRVNCVSPGGILDNQP-------EA-FLNAYKKCC---- 217 (256)
T ss_pred hccccccC------CcchhHHHHHHHHHHHHHHHHHhCcCCeEEEEEecccccCCCC-------HH-HHHHHHhcC----
Confidence 11222211 1124999999999999988875 479999999999876431 11 111111110
Q ss_pred CCccceeHHHHHHHHHHhhcCCCC--CccEEEe
Q 023515 226 VTFGWVNVKDVANAHIQAFEVPSA--NGRYCLV 256 (281)
Q Consensus 226 ~~~~~i~~~D~a~~i~~~~~~~~~--~g~~~~~ 256 (281)
....+++++|+|+++++++.+... .|.++..
T Consensus 218 ~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~ 250 (256)
T PRK09186 218 NGKGMLDPDDICGTLVFLLSDQSKYITGQNIIV 250 (256)
T ss_pred CccCCCCHHHhhhhHhheeccccccccCceEEe
Confidence 123478999999999999986542 4655443
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5e-25 Score=183.46 Aligned_cols=219 Identities=16% Similarity=0.169 Sum_probs=157.0
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++++++||||+|+||++++++|+++|++|++++|+.++.+.+.... ..++.++++|++|.+++.++++
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL-----GERARFIATDITDDAAIERAVATVVAR 77 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCeeEEEEecCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999875444332221 2368899999999988877765
Q ss_pred --CCcEeEEecccCCC----CCCCccchhhhhHHHHHHHHHHHhhhCC--CccEEEEeccceeeecCCCCCCCCeeeecC
Q 023515 81 --GCDGVCHTASPFYH----DAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (281)
Q Consensus 81 --~~d~Vih~a~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~ 152 (281)
++|++|||||.... ...+.+++.+++|+.++.++++++.+.+ +.+++|++||..+..+.+
T Consensus 78 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~------------ 145 (261)
T PRK08265 78 FGRVDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISAKFAQT------------ 145 (261)
T ss_pred hCCCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhhccCCC------------
Confidence 57999999986321 2234566889999999999999988753 346899999987765321
Q ss_pred CCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCcc
Q 023515 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG 229 (281)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (281)
....|+.+|.+.+.+++.++.++ |+++++|+||.+.++..............+.... ..+ ...
T Consensus 146 ----------~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~~~t~~~~~~~~~~~~~~~~~~~~--~~p--~~r 211 (261)
T PRK08265 146 ----------GRWLYPASKAAIRQLTRSMAMDLAPDGIRVNSVSPGWTWSRVMDELSGGDRAKADRVAAP--FHL--LGR 211 (261)
T ss_pred ----------CCchhHHHHHHHHHHHHHHHHHhcccCEEEEEEccCCccChhhhhhcccchhHHHHhhcc--cCC--CCC
Confidence 12349999999999999988764 8999999999998875322111111111111111 111 123
Q ss_pred ceeHHHHHHHHHHhhcCCCC--CccEEE
Q 023515 230 WVNVKDVANAHIQAFEVPSA--NGRYCL 255 (281)
Q Consensus 230 ~i~~~D~a~~i~~~~~~~~~--~g~~~~ 255 (281)
+..++|+|+++.+++..... .|+.+.
T Consensus 212 ~~~p~dva~~~~~l~s~~~~~~tG~~i~ 239 (261)
T PRK08265 212 VGDPEEVAQVVAFLCSDAASFVTGADYA 239 (261)
T ss_pred ccCHHHHHHHHHHHcCccccCccCcEEE
Confidence 56899999999999986432 454333
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-25 Score=182.98 Aligned_cols=221 Identities=16% Similarity=0.163 Sum_probs=155.5
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHh-------cC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV-------DG 81 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-------~~ 81 (281)
++++|||||+|+||++++++|+++|++|++++|+......+..+.... ..++.++++|+.|++++.+++ .+
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDA--GGSVIYLVADVTKEDEIADMIAAAAAEFGG 78 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 468999999999999999999999999999999865544443332211 246889999999998665544 36
Q ss_pred CcEeEEecccCCCC-----CCCccchhhhhHHHHHHHHHHHhhhC---CCccEEEEeccceeeecCCCCCCCCeeeecCC
Q 023515 82 CDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (281)
Q Consensus 82 ~d~Vih~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~ 153 (281)
+|+|||+|+..... ..+.++..++.|+.++..+++.+.+. .+.+++|++||..++.+.+
T Consensus 79 ~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~~~~------------- 145 (255)
T TIGR01963 79 LDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWGRIINIASAHGLVASP------------- 145 (255)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcCCCC-------------
Confidence 89999999864321 12234567889999999999888542 1567999999976654211
Q ss_pred CCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCC-------Cc-cHHHHHHHHhCCCC
Q 023515 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTL-------NT-SAAAVLSLIKGAQT 222 (281)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~-------~~-~~~~~~~~~~~~~~ 222 (281)
....|+.+|.+.+.+++.++.+ .+++++++||+.+++|...... .. ....+.....+
T Consensus 146 ---------~~~~y~~sk~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 213 (255)
T TIGR01963 146 ---------FKSAYVAAKHGLIGLTKVLALEVAAHGITVNAICPGYVRTPLVEKQIADQAKTRGIPEEQVIREVMLP--- 213 (255)
T ss_pred ---------CCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHHHHHHhhhcccCCCchHHHHHHHHc---
Confidence 1234999999999999988765 3899999999999987521100 00 00011111111
Q ss_pred CCCCCccceeHHHHHHHHHHhhcCCCC--Cc-cEEEec
Q 023515 223 YPNVTFGWVNVKDVANAHIQAFEVPSA--NG-RYCLVE 257 (281)
Q Consensus 223 ~~~~~~~~i~~~D~a~~i~~~~~~~~~--~g-~~~~~~ 257 (281)
+.+.+++++++|+|++++.++.+... .| .|++++
T Consensus 214 -~~~~~~~~~~~d~a~~~~~~~~~~~~~~~g~~~~~~~ 250 (255)
T TIGR01963 214 -GQPTKRFVTVDEVAETALFLASDAAAGITGQAIVLDG 250 (255)
T ss_pred -cCccccCcCHHHHHHHHHHHcCccccCccceEEEEcC
Confidence 23456799999999999999986422 34 566654
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.5e-25 Score=183.66 Aligned_cols=226 Identities=18% Similarity=0.108 Sum_probs=159.8
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++|+++||||+|+||++++++|+++|++|++++|+.+..+.+...........++.++++|++|++++.++++
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA 83 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999765544433332221122468899999999988887765
Q ss_pred --CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 --GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 --~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|++|||||... ....+.|+..+++|+.++.++++++.+.+ +.+++|++||..+..+.+
T Consensus 84 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 153 (260)
T PRK07063 84 FGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGRGSIVNIASTHAFKIIP---------- 153 (260)
T ss_pred hCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCeEEEEECChhhccCCC----------
Confidence 6899999998632 12234577889999999999999988642 346899999986654211
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCc--cHHHHHHHHhCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNT--SAAAVLSLIKGAQTYPN 225 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~--~~~~~~~~~~~~~~~~~ 225 (281)
....|+.+|++.+.+++.+++++ |+++++++||.+.++........ .............+
T Consensus 154 ------------~~~~Y~~sKaa~~~~~~~la~el~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~--- 218 (260)
T PRK07063 154 ------------GCFPYPVAKHGLLGLTRALGIEYAARNVRVNAIAPGYIETQLTEDWWNAQPDPAAARAETLALQP--- 218 (260)
T ss_pred ------------CchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccChhhhhhhhccCChHHHHHHHHhcCC---
Confidence 12349999999999999998765 79999999999987753211100 01111111111111
Q ss_pred CCccceeHHHHHHHHHHhhcCCC--CCccEEEec
Q 023515 226 VTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVE 257 (281)
Q Consensus 226 ~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~ 257 (281)
...+..++|+|.++++++.+.. ..|+.+..+
T Consensus 219 -~~r~~~~~~va~~~~fl~s~~~~~itG~~i~vd 251 (260)
T PRK07063 219 -MKRIGRPEEVAMTAVFLASDEAPFINATCITID 251 (260)
T ss_pred -CCCCCCHHHHHHHHHHHcCccccccCCcEEEEC
Confidence 1225689999999999998643 356544443
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.4e-25 Score=184.71 Aligned_cols=213 Identities=15% Similarity=0.089 Sum_probs=153.2
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC--cchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND--PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
.+++|+++||||+|+||++++++|+++|++|++++|+... .+.+..+... ...++.++.+|++|.+++.++++
T Consensus 46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~ 123 (294)
T PRK07985 46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEE--CGRKAVLLPGDLSDEKFARSLVHEAH 123 (294)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHH--cCCeEEEEEccCCCHHHHHHHHHHHH
Confidence 3567899999999999999999999999999988775432 2222222211 12457889999999988776654
Q ss_pred ----CCcEeEEecccCC------CCCCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCCCCCeee
Q 023515 81 ----GCDGVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (281)
Q Consensus 81 ----~~d~Vih~a~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (281)
++|++||+||... ....+.|+..+++|+.++.++++++.+.+ ..++||++||..++.+.+
T Consensus 124 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~~~~~--------- 194 (294)
T PRK07985 124 KALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQPSP--------- 194 (294)
T ss_pred HHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhccCCC---------
Confidence 5799999998521 22234567889999999999999998753 235899999987654211
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCC
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (281)
....|+.+|.+.+.+++.++.+ .|+++++|+||.+++|..... .............. .
T Consensus 195 -------------~~~~Y~asKaal~~l~~~la~el~~~gIrvn~i~PG~v~t~~~~~~-~~~~~~~~~~~~~~-----~ 255 (294)
T PRK07985 195 -------------HLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISG-GQTQDKIPQFGQQT-----P 255 (294)
T ss_pred -------------CcchhHHHHHHHHHHHHHHHHHHhHhCcEEEEEECCcCcccccccc-CCCHHHHHHHhccC-----C
Confidence 1134999999999999999876 489999999999999864211 11111121221111 1
Q ss_pred CccceeHHHHHHHHHHhhcCCC
Q 023515 227 TFGWVNVKDVANAHIQAFEVPS 248 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~ 248 (281)
...+..++|+|.++++++....
T Consensus 256 ~~r~~~pedva~~~~fL~s~~~ 277 (294)
T PRK07985 256 MKRAGQPAELAPVYVYLASQES 277 (294)
T ss_pred CCCCCCHHHHHHHHHhhhChhc
Confidence 2236789999999999998644
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-25 Score=183.22 Aligned_cols=222 Identities=12% Similarity=0.053 Sum_probs=156.1
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------C
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------G 81 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~ 81 (281)
+++|+||||+|+||+++++.|+++|++|++++|+......+...........++.++.+|+++.+++..+++ +
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 81 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGR 81 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 678999999999999999999999999999999865444333221111111358899999999888776654 5
Q ss_pred CcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---C-ccEEEEeccceeeecCCCCCCCCeeeecC
Q 023515 82 CDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---S-IKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (281)
Q Consensus 82 ~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~-~~~~v~~SS~~~~~~~~~~~~~~~~~~e~ 152 (281)
+|+|||+||.... ...+.++..+++|+.++.++++++.+.+ + ..++|++||..+.++..
T Consensus 82 id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~~~~~~~------------ 149 (259)
T PRK12384 82 VDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVGSK------------ 149 (259)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcccccCCC------------
Confidence 7999999986322 1223456788999999999998887642 3 35899999976544211
Q ss_pred CCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHH----------HHHHHhC
Q 023515 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAA----------VLSLIKG 219 (281)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~----------~~~~~~~ 219 (281)
....|+.+|++.+.+++.++.+ .|++++++|||.++++..... ..... ..+....
T Consensus 150 ----------~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~pg~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 217 (259)
T PRK12384 150 ----------HNSGYSAAKFGGVGLTQSLALDLAEYGITVHSLMLGNLLKSPMFQS--LLPQYAKKLGIKPDEVEQYYID 217 (259)
T ss_pred ----------CCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCcccchhhhh--hhHHHHHhcCCChHHHHHHHHH
Confidence 1235999999999999988864 699999999999876543211 11110 1111000
Q ss_pred CCCCCCCCccceeHHHHHHHHHHhhcCCCC--Cc-cEEEecC
Q 023515 220 AQTYPNVTFGWVNVKDVANAHIQAFEVPSA--NG-RYCLVER 258 (281)
Q Consensus 220 ~~~~~~~~~~~i~~~D~a~~i~~~~~~~~~--~g-~~~~~~~ 258 (281)
+.....+++++|+++++++++.+... .| .|++.++
T Consensus 218 ----~~~~~~~~~~~dv~~~~~~l~~~~~~~~~G~~~~v~~g 255 (259)
T PRK12384 218 ----KVPLKRGCDYQDVLNMLLFYASPKASYCTGQSINVTGG 255 (259)
T ss_pred ----hCcccCCCCHHHHHHHHHHHcCcccccccCceEEEcCC
Confidence 12345689999999999999876533 35 5777654
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.8e-25 Score=185.39 Aligned_cols=215 Identities=20% Similarity=0.180 Sum_probs=152.5
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------- 80 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------- 80 (281)
++++++||||+|+||++++++|+++|++|++++|+.++...+.. .++.++++|++|.+++.++++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~--------~~~~~~~~Dv~~~~~~~~~~~~~~~~~~ 73 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS--------LGVHPLSLDVTDEASIKAAVDTIIAEEG 73 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh--------CCCeEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 47899999999999999999999999999999998654322111 247889999999998888776
Q ss_pred CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeecC
Q 023515 81 GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (281)
Q Consensus 81 ~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~ 152 (281)
++|+||||||.... ...+.++..+++|+.++.++++.+.+.+ +.+++|++||..+..+.+
T Consensus 74 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~~~------------ 141 (273)
T PRK06182 74 RIDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRSGRIINISSMGGKIYTP------------ 141 (273)
T ss_pred CCCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhcCCCC------------
Confidence 68999999986322 1234467889999999777777665431 457899999976543111
Q ss_pred CCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCC--------c-cHHH---HHHHH
Q 023515 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLN--------T-SAAA---VLSLI 217 (281)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~--------~-~~~~---~~~~~ 217 (281)
...+|+.+|.+.+.+++.++.+ +|+++++++||.+.++....... . .... +.+..
T Consensus 142 ----------~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (273)
T PRK06182 142 ----------LGAWYHATKFALEGFSDALRLEVAPFGIDVVVIEPGGIKTEWGDIAADHLLKTSGNGAYAEQAQAVAASM 211 (273)
T ss_pred ----------CccHhHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCcccccchhhhhhhcccccccchHHHHHHHHHHH
Confidence 1235999999999998887754 58999999999999875321100 0 0000 00111
Q ss_pred hCCCCCCCCCccceeHHHHHHHHHHhhcCCCCCccEEEe
Q 023515 218 KGAQTYPNVTFGWVNVKDVANAHIQAFEVPSANGRYCLV 256 (281)
Q Consensus 218 ~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~~~g~~~~~ 256 (281)
... .....+.+++|+|+++++++........|+++
T Consensus 212 ~~~----~~~~~~~~~~~vA~~i~~~~~~~~~~~~~~~g 246 (273)
T PRK06182 212 RST----YGSGRLSDPSVIADAISKAVTARRPKTRYAVG 246 (273)
T ss_pred HHh----hccccCCCHHHHHHHHHHHHhCCCCCceeecC
Confidence 100 12344779999999999999876544566654
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.9e-25 Score=181.44 Aligned_cols=220 Identities=18% Similarity=0.155 Sum_probs=158.9
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++++++||||+|+||++++++|+++|++|++++|+..+...+...... ..++.++++|+.|++++..+++
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA---GGRAIAVAADVSDEADVEAAVAAALERF 79 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 5688999999999999999999999999999999987654433222111 2458899999999999887765
Q ss_pred -CCcEeEEecccCCC------CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 -GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 -~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|+|||+|+.... ...+.++..+++|+.++.++++.+.+.+ +.++||++||..++.+.+
T Consensus 80 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~---------- 149 (251)
T PRK07231 80 GSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAIVNVASTAGLRPRP---------- 149 (251)
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcCCCC----------
Confidence 57999999986322 1234466889999999999998888632 557899999987764211
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCc-cHHHHHHHHhCCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNT-SAAAVLSLIKGAQTYPNV 226 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 226 (281)
....|+.+|.+.+.+++.++.++ ++++++++||.+.++........ ............ .
T Consensus 150 ------------~~~~y~~sk~~~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~-----~ 212 (251)
T PRK07231 150 ------------GLGWYNASKGAVITLTKALAAELGPDKIRVNAVAPVVVETGLLEAFMGEPTPENRAKFLATI-----P 212 (251)
T ss_pred ------------CchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEECccCCCcchhhhcccChHHHHHHhcCC-----C
Confidence 12459999999999999888754 89999999999987753321110 011111111111 2
Q ss_pred CccceeHHHHHHHHHHhhcCCCC--CccEEEe
Q 023515 227 TFGWVNVKDVANAHIQAFEVPSA--NGRYCLV 256 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~~--~g~~~~~ 256 (281)
...+++++|+|+++++++..... .|.++..
T Consensus 213 ~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~ 244 (251)
T PRK07231 213 LGRLGTPEDIANAALFLASDEASWITGVTLVV 244 (251)
T ss_pred CCCCcCHHHHHHHHHHHhCccccCCCCCeEEE
Confidence 34578999999999999976543 4655443
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.5e-25 Score=182.83 Aligned_cols=224 Identities=17% Similarity=0.086 Sum_probs=154.6
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++|++|||||+|+||++++++|+++|++|++++|+ ++...+...... ...++.++++|+++++++..+++
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 79 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKS--NGGKAKAYHVDISDEQQVKDFASEIKEQ 79 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHh--cCCeEEEEEeecCCHHHHHHHHHHHHHH
Confidence 4668999999999999999999999999999999998 433332222211 12468899999999988877665
Q ss_pred --CCcEeEEecccCCC------CCCCccchhhhhHHHHHHHHHHHhhhCC--CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 --GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 --~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|++|||||.... ...+.++..+++|+.++..+++++.+.+ +.+++|++||..++.+.+
T Consensus 80 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 149 (272)
T PRK08589 80 FGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQGGSIINTSSFSGQAADL---------- 149 (272)
T ss_pred cCCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEeCchhhcCCCC----------
Confidence 57999999986421 1123456788999999999999988752 226899999987654211
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
....|+.+|++.+.+++.++.++ |++++++.||.|.++...........................
T Consensus 150 ------------~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (272)
T PRK08589 150 ------------YRSGYNAAKGAVINFTKSIAIEYGRDGIRANAIAPGTIETPLVDKLTGTSEDEAGKTFRENQKWMTPL 217 (272)
T ss_pred ------------CCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCchhhhhcccchhhHHHHHhhhhhccCCC
Confidence 12349999999999999998764 799999999999887533211111111111110000000011
Q ss_pred ccceeHHHHHHHHHHhhcCCC--CCccEE
Q 023515 228 FGWVNVKDVANAHIQAFEVPS--ANGRYC 254 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~--~~g~~~ 254 (281)
..+..++|+|+++++++.... ..|..+
T Consensus 218 ~~~~~~~~va~~~~~l~s~~~~~~~G~~i 246 (272)
T PRK08589 218 GRLGKPEEVAKLVVFLASDDSSFITGETI 246 (272)
T ss_pred CCCcCHHHHHHHHHHHcCchhcCcCCCEE
Confidence 235689999999999997543 245443
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.5e-25 Score=181.65 Aligned_cols=221 Identities=20% Similarity=0.177 Sum_probs=154.4
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEE-EcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKAS-VRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
+++++|+||||+|+||++++++|+++|++|+++ .|+..+........ .....+++++++|++|++++.++++
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~--~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~ 81 (254)
T PRK12746 4 LDGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREI--ESNGGKAFLIEADLNSIDGVKKLVEQLKNE 81 (254)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHH--HhcCCcEEEEEcCcCCHHHHHHHHHHHHHH
Confidence 557899999999999999999999999998875 45543222211111 1112468899999999998877765
Q ss_pred --------CCcEeEEecccCCCC-----CCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCCCCC
Q 023515 81 --------GCDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPD 146 (281)
Q Consensus 81 --------~~d~Vih~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~ 146 (281)
++|+|||+||..... ..+.++..+++|+.++.++++++.+.+ +.+++|++||..++.+.+
T Consensus 82 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS~~~~~~~~------ 155 (254)
T PRK12746 82 LQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISSAEVRLGFT------ 155 (254)
T ss_pred hccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCHHhcCCCC------
Confidence 489999999863321 222346778899999999999998752 335899999986654211
Q ss_pred eeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCC
Q 023515 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY 223 (281)
Q Consensus 147 ~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~ 223 (281)
....|+.+|.+.+.+++.++++ .++++++++||.+++|....... . ..+.........
T Consensus 156 ----------------~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~pg~~~t~~~~~~~~-~-~~~~~~~~~~~~- 216 (254)
T PRK12746 156 ----------------GSIAYGLSKGALNTMTLPLAKHLGERGITVNTIMPGYTKTDINAKLLD-D-PEIRNFATNSSV- 216 (254)
T ss_pred ----------------CCcchHhhHHHHHHHHHHHHHHHhhcCcEEEEEEECCccCcchhhhcc-C-hhHHHHHHhcCC-
Confidence 1245999999999999988775 47999999999999886332111 0 111121111111
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCCC--Cc-cEEEec
Q 023515 224 PNVTFGWVNVKDVANAHIQAFEVPSA--NG-RYCLVE 257 (281)
Q Consensus 224 ~~~~~~~i~~~D~a~~i~~~~~~~~~--~g-~~~~~~ 257 (281)
...+++++|+|+++..++..+.. .| .|++.+
T Consensus 217 ---~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~i~~ 250 (254)
T PRK12746 217 ---FGRIGQVEDIADAVAFLASSDSRWVTGQIIDVSG 250 (254)
T ss_pred ---cCCCCCHHHHHHHHHHHcCcccCCcCCCEEEeCC
Confidence 23467999999999998876532 24 677654
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-25 Score=183.64 Aligned_cols=212 Identities=17% Similarity=0.109 Sum_probs=153.4
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++|+||||||+|+||++++++|+++|++|++++|++.+.+.+....... ..++.++.+|++|.+++..+++
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDL--GRRALAVPTDITDEDQCANLVALALERF 80 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHh--CCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence 45789999999999999999999999999999999865443333222111 2468899999999988877664
Q ss_pred -CCcEeEEecccCCC------CCCCccchhhhhHHHHHHHHHHHhhhCC--CccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 -GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 -~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
++|+|||+||.... ...+.++..+++|+.++..+++++.+.+ ..++||++||.....+.+
T Consensus 81 g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS~~~~~~~~----------- 149 (258)
T PRK07890 81 GRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINSMVLRHSQP----------- 149 (258)
T ss_pred CCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEechhhccCCC-----------
Confidence 57999999986322 2234566889999999999999998742 235899999976643111
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCC-------cc-HHHHHHHHhCC
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLN-------TS-AAAVLSLIKGA 220 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~-------~~-~~~~~~~~~~~ 220 (281)
....|+.+|.+.+.+++.++.++ ++++++++||.++||....... .. ..........
T Consensus 150 -----------~~~~Y~~sK~a~~~l~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 217 (258)
T PRK07890 150 -----------KYGAYKMAKGALLAASQSLATELGPQGIRVNSVAPGYIWGDPLKGYFRHQAGKYGVTVEQIYAETAAN- 217 (258)
T ss_pred -----------CcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEeCCccCcHHHHHHhhhcccccCCCHHHHHHHHhhc-
Confidence 12359999999999999998754 8999999999999986322110 00 1111111111
Q ss_pred CCCCCCCccceeHHHHHHHHHHhhcCC
Q 023515 221 QTYPNVTFGWVNVKDVANAHIQAFEVP 247 (281)
Q Consensus 221 ~~~~~~~~~~i~~~D~a~~i~~~~~~~ 247 (281)
.....+.+++|+|+++++++++.
T Consensus 218 ----~~~~~~~~~~dva~a~~~l~~~~ 240 (258)
T PRK07890 218 ----SDLKRLPTDDEVASAVLFLASDL 240 (258)
T ss_pred ----CCccccCCHHHHHHHHHHHcCHh
Confidence 11234779999999999999853
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=180.35 Aligned_cols=220 Identities=18% Similarity=0.174 Sum_probs=157.7
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++|+++||||+|+||++++++|+++|++|++++|+.+.......... ...++.++++|++|++++.++++
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~i~~~~ 79 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA---AGGRAFARQGDVGSAEAVEALVDFVAARW 79 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh---cCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 568899999999999999999999999999999998654333222211 12468899999999988887765
Q ss_pred -CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhC---CCccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 -~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
++|+|||+|+.... ...+.++..+++|+.++.++.+.+.+. .+.++||++||..+.++.+
T Consensus 80 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~~~~----------- 148 (252)
T PRK06138 80 GRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQGGGSIVNTASQLALAGGR----------- 148 (252)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCeEEEEECChhhccCCC-----------
Confidence 68999999996332 123335577899999999888877642 1557899999987765321
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCC--ccHHHHHHHHhCCCCCCCC
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLN--TSAAAVLSLIKGAQTYPNV 226 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 226 (281)
....|+.+|.+.+.+++.++.++ |++++++|||.++++....... .....+........ .
T Consensus 149 -----------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~----~ 213 (252)
T PRK06138 149 -----------GRAAYVASKGAIASLTRAMALDHATDGIRVNAVAPGTIDTPYFRRIFARHADPEALREALRARH----P 213 (252)
T ss_pred -----------CccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEECCccCcchhhhhccccChHHHHHHHHhcC----C
Confidence 12359999999999999998765 8999999999999886332111 01111221222111 1
Q ss_pred CccceeHHHHHHHHHHhhcCCCC--CccEEE
Q 023515 227 TFGWVNVKDVANAHIQAFEVPSA--NGRYCL 255 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~~--~g~~~~ 255 (281)
...|++++|+++++++++.++.. .|.++.
T Consensus 214 ~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~ 244 (252)
T PRK06138 214 MNRFGTAEEVAQAALFLASDESSFATGTTLV 244 (252)
T ss_pred CCCCcCHHHHHHHHHHHcCchhcCccCCEEE
Confidence 22378999999999999987653 354443
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-25 Score=184.02 Aligned_cols=222 Identities=16% Similarity=0.121 Sum_probs=157.9
Q ss_pred hccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 5 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
+.+++|+++||||+|+||++++++|+++|++|++++|+.++.+.+....... ..++.++++|++|++++.++++
T Consensus 5 ~~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (253)
T PRK05867 5 FDLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTS--GGKVVPVCCDVSQHQQVTSMLDQVTA 82 (253)
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 3467899999999999999999999999999999999865544433322221 2467889999999988877764
Q ss_pred ---CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---C-ccEEEEeccceeeecCCCCCCCCee
Q 023515 81 ---GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---S-IKRVVLTSSMAAVLNTGKPRTPDVV 148 (281)
Q Consensus 81 ---~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~-~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (281)
++|++|||||.... ...+.++..+++|+.++..+++++.+.+ + ..++|++||..+.......
T Consensus 83 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~------ 156 (253)
T PRK05867 83 ELGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHIINVPQ------ 156 (253)
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHHhcCCCCCC------
Confidence 78999999986321 2234566888999999999999987642 1 2479999997553211000
Q ss_pred eecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCC
Q 023515 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (281)
Q Consensus 149 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (281)
....|+.+|.+.+.+++.++.++ |+++++++||.+.++..... ...........+
T Consensus 157 --------------~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~i~PG~v~t~~~~~~----~~~~~~~~~~~~---- 214 (253)
T PRK05867 157 --------------QVSHYCASKAAVIHLTKAMAVELAPHKIRVNSVSPGYILTELVEPY----TEYQPLWEPKIP---- 214 (253)
T ss_pred --------------CccchHHHHHHHHHHHHHHHHHHhHhCeEEEEeecCCCCCcccccc----hHHHHHHHhcCC----
Confidence 01349999999999999998764 89999999999988763321 111111211111
Q ss_pred CCccceeHHHHHHHHHHhhcCCCC--CccEEEec
Q 023515 226 VTFGWVNVKDVANAHIQAFEVPSA--NGRYCLVE 257 (281)
Q Consensus 226 ~~~~~i~~~D~a~~i~~~~~~~~~--~g~~~~~~ 257 (281)
...+..++|+|+++++++..... .|+.+..+
T Consensus 215 -~~r~~~p~~va~~~~~L~s~~~~~~tG~~i~vd 247 (253)
T PRK05867 215 -LGRLGRPEELAGLYLYLASEASSYMTGSDIVID 247 (253)
T ss_pred -CCCCcCHHHHHHHHHHHcCcccCCcCCCeEEEC
Confidence 12367999999999999975432 45444443
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.8e-25 Score=182.47 Aligned_cols=219 Identities=19% Similarity=0.206 Sum_probs=155.4
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCc-chhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP-KKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------- 80 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------- 80 (281)
+|+++||||+|+||++++++|+++|++|++++|+.... .......+. ...++.++++|+++++++.++++
T Consensus 2 ~k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK12745 2 RPVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRA--LGVEVIFFPADVADLSAHEAMLDAAQAAWG 79 (256)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHh--cCCceEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 46899999999999999999999999999999875322 111111111 12468999999999988777664
Q ss_pred CCcEeEEecccCCC-------CCCCccchhhhhHHHHHHHHHHHhhhCC----C-----ccEEEEeccceeeecCCCCCC
Q 023515 81 GCDGVCHTASPFYH-------DAKDPQVELLDPAVKGTLNVLNSCAKFP----S-----IKRVVLTSSMAAVLNTGKPRT 144 (281)
Q Consensus 81 ~~d~Vih~a~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~~~~~----~-----~~~~v~~SS~~~~~~~~~~~~ 144 (281)
++|+|||+||.... ...+.++..+++|+.++.++++++.+.+ + .++||++||..+..+..
T Consensus 80 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~---- 155 (256)
T PRK12745 80 RIDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIMVSP---- 155 (256)
T ss_pred CCCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhccCCC----
Confidence 67999999986321 1234566789999999999999987641 1 46799999987765321
Q ss_pred CCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCC
Q 023515 145 PDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ 221 (281)
Q Consensus 145 ~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~ 221 (281)
....|+.+|.+.|.+++.++.+ +|+++++++||.+.++...... .........+..
T Consensus 156 ------------------~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~---~~~~~~~~~~~~ 214 (256)
T PRK12745 156 ------------------NRGEYCISKAGLSMAAQLFAARLAEEGIGVYEVRPGLIKTDMTAPVT---AKYDALIAKGLV 214 (256)
T ss_pred ------------------CCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCCCcCccccccc---hhHHhhhhhcCC
Confidence 1235999999999999999875 5899999999999987543211 111111111111
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCCCC--Cc-cEEEecC
Q 023515 222 TYPNVTFGWVNVKDVANAHIQAFEVPSA--NG-RYCLVER 258 (281)
Q Consensus 222 ~~~~~~~~~i~~~D~a~~i~~~~~~~~~--~g-~~~~~~~ 258 (281)
....|.+++|+++++.+++..... .| .|++.++
T Consensus 215 ----~~~~~~~~~d~a~~i~~l~~~~~~~~~G~~~~i~gg 250 (256)
T PRK12745 215 ----PMPRWGEPEDVARAVAALASGDLPYSTGQAIHVDGG 250 (256)
T ss_pred ----CcCCCcCHHHHHHHHHHHhCCcccccCCCEEEECCC
Confidence 123577999999999999875432 34 5666543
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=180.18 Aligned_cols=212 Identities=17% Similarity=0.102 Sum_probs=152.9
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++|++|||||+|+||++++++|+++|++|++++|+.... .++.++++|++|+++++++++
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~~-------------~~~~~~~~D~~~~~~i~~~~~~~~~~ 69 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPSY-------------NDVDYFKVDVSNKEQVIKGIDYVISK 69 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcccc-------------CceEEEEccCCCHHHHHHHHHHHHHH
Confidence 46689999999999999999999999999999999876432 257889999999988877765
Q ss_pred --CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 --GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 --~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|+||||||... ....+.|+..+++|+.++..+++++.+.+ +.+++|++||..++.+.+
T Consensus 70 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 139 (258)
T PRK06398 70 YGRIDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGVIINIASVQSFAVTR---------- 139 (258)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeCcchhccCCC----------
Confidence 6899999998622 22334567889999999999999988642 457899999986654111
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc--CCcEEEEcCCcccCCCCCCCC----CccHHHHHHHHhC-CCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK--SIDLVTINPAMVIGPLLQPTL----NTSAAAVLSLIKG-AQTY 223 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--g~~~~~irp~~v~g~~~~~~~----~~~~~~~~~~~~~-~~~~ 223 (281)
....|+.+|.+.+.+++.++.++ ++++++++||.+.++...... ........+.... ....
T Consensus 140 ------------~~~~Y~~sKaal~~~~~~la~e~~~~i~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (258)
T PRK06398 140 ------------NAAAYVTSKHAVLGLTRSIAVDYAPTIRCVAVCPGSIRTPLLEWAAELEVGKDPEHVERKIREWGEMH 207 (258)
T ss_pred ------------CCchhhhhHHHHHHHHHHHHHHhCCCCEEEEEecCCccchHHhhhhhccccCChhhhHHHHHhhhhcC
Confidence 12459999999999999998875 489999999999887432110 0011111111100 0000
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCC--CCccEE
Q 023515 224 PNVTFGWVNVKDVANAHIQAFEVPS--ANGRYC 254 (281)
Q Consensus 224 ~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~ 254 (281)
....+..++|+|+++++++.... ..|..+
T Consensus 208 --~~~~~~~p~eva~~~~~l~s~~~~~~~G~~i 238 (258)
T PRK06398 208 --PMKRVGKPEEVAYVVAFLASDLASFITGECV 238 (258)
T ss_pred --CcCCCcCHHHHHHHHHHHcCcccCCCCCcEE
Confidence 12236789999999999997543 245443
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=179.71 Aligned_cols=211 Identities=18% Similarity=0.149 Sum_probs=150.7
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++++++||||+|+||++++++|+++|++|++++|+.+....+.+. . ..++.++++|++|.+++..+++
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~---~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (249)
T PRK06500 3 RLQGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAE---L--GESALVIRADAGDVAAQKALAQALAEA 77 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHH---h--CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 35588999999999999999999999999999999875433222111 1 1357889999999877666543
Q ss_pred --CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCCCCCeeeecC
Q 023515 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (281)
Q Consensus 81 --~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~ 152 (281)
++|+|||+||.... ...+.++..+++|+.++.++++++.+.+ ...++|++||..+.++.+
T Consensus 78 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S~~~~~~~~------------ 145 (249)
T PRK06500 78 FGRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGSINAHIGMP------------ 145 (249)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEechHhccCCC------------
Confidence 68999999986332 1234466889999999999999999742 235788888876655321
Q ss_pred CCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCC--CC-ccHHHHHHHHhCCCCCCCC
Q 023515 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPT--LN-TSAAAVLSLIKGAQTYPNV 226 (281)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~--~~-~~~~~~~~~~~~~~~~~~~ 226 (281)
....|+.+|.+.|.+++.++.++ |++++++|||.+++|..... .. .............+
T Consensus 146 ----------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~----- 210 (249)
T PRK06500 146 ----------NSSVYAASKAALLSLAKTLSGELLPRGIRVNAVSPGPVQTPLYGKLGLPEATLDAVAAQIQALVP----- 210 (249)
T ss_pred ----------CccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCCCHHHHhhccCccchHHHHHHHHhcCC-----
Confidence 12459999999999999887754 89999999999999853211 01 11112222222211
Q ss_pred CccceeHHHHHHHHHHhhcCCC
Q 023515 227 TFGWVNVKDVANAHIQAFEVPS 248 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~ 248 (281)
...+..++|+|+++.+++....
T Consensus 211 ~~~~~~~~~va~~~~~l~~~~~ 232 (249)
T PRK06500 211 LGRFGTPEEIAKAVLYLASDES 232 (249)
T ss_pred CCCCcCHHHHHHHHHHHcCccc
Confidence 1225689999999999987543
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.9e-25 Score=180.73 Aligned_cols=219 Identities=18% Similarity=0.139 Sum_probs=157.6
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
|++++|+||||+|+||++++++|+++|++|++++|++.+...+...... ...++.++.+|++|++++.++++
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRA--AGGEARVLVFDVSDEAAVRALIEAAVEAF 80 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHh--cCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999999999987654443322211 12468899999999988877765
Q ss_pred -CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhC---CCccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 -~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
.+|+|||+||.... ...+.++..++.|+.++.++++++.+. .+.++||++||.....+..
T Consensus 81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~ss~~~~~~~~----------- 149 (246)
T PRK05653 81 GALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNISSVSGVTGNP----------- 149 (246)
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhccCCC-----------
Confidence 46999999986332 122334577899999999999999642 2557999999976654211
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCc
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (281)
....|+.+|.+.+.+++.++++ .+++++++||+.++++.... ......+..... -...
T Consensus 150 -----------~~~~y~~sk~~~~~~~~~l~~~~~~~~i~~~~i~pg~~~~~~~~~----~~~~~~~~~~~~----~~~~ 210 (246)
T PRK05653 150 -----------GQTNYSAAKAGVIGFTKALALELASRGITVNAVAPGFIDTDMTEG----LPEEVKAEILKE----IPLG 210 (246)
T ss_pred -----------CCcHhHhHHHHHHHHHHHHHHHHhhcCeEEEEEEeCCcCCcchhh----hhHHHHHHHHhc----CCCC
Confidence 1234999999999999988765 48999999999999986432 111222211111 1125
Q ss_pred cceeHHHHHHHHHHhhcCCCC--Cc-cEEEec
Q 023515 229 GWVNVKDVANAHIQAFEVPSA--NG-RYCLVE 257 (281)
Q Consensus 229 ~~i~~~D~a~~i~~~~~~~~~--~g-~~~~~~ 257 (281)
.+++++|+++++.+++..... .| .|++.|
T Consensus 211 ~~~~~~dva~~~~~~~~~~~~~~~g~~~~~~g 242 (246)
T PRK05653 211 RLGQPEEVANAVAFLASDAASYITGQVIPVNG 242 (246)
T ss_pred CCcCHHHHHHHHHHHcCchhcCccCCEEEeCC
Confidence 588999999999999975432 34 555554
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.4e-25 Score=184.14 Aligned_cols=203 Identities=15% Similarity=0.228 Sum_probs=149.9
Q ss_pred eEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHh------cC-Cc
Q 023515 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV------DG-CD 83 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~------~~-~d 83 (281)
+|+||||||+||++++++|+++|++|++++|++++... .+++.+.+|+.|++.+..++ ++ +|
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~-----------~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d 69 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAG-----------PNEKHVKFDWLDEDTWDNPFSSDDGMEPEIS 69 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccC-----------CCCccccccCCCHHHHHHHHhcccCcCCcee
Confidence 48999999999999999999999999999998765422 35677889999999999988 56 99
Q ss_pred EeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccC
Q 023515 84 GVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQS 163 (281)
Q Consensus 84 ~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 163 (281)
.|+|+++.... ......+++++|++. ++++||++||..+..+
T Consensus 70 ~v~~~~~~~~~------------~~~~~~~~i~aa~~~-gv~~~V~~Ss~~~~~~------------------------- 111 (285)
T TIGR03649 70 AVYLVAPPIPD------------LAPPMIKFIDFARSK-GVRRFVLLSASIIEKG------------------------- 111 (285)
T ss_pred EEEEeCCCCCC------------hhHHHHHHHHHHHHc-CCCEEEEeeccccCCC-------------------------
Confidence 99999763211 123456899999998 8999999999654321
Q ss_pred CchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHh-CC--CCCCCCCccceeHHHHHHHH
Q 023515 164 ELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIK-GA--QTYPNVTFGWVNVKDVANAH 240 (281)
Q Consensus 164 ~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~i~~~D~a~~i 240 (281)
+..+...|.++++. .|++++++||+.++....... ....+.. +. ...++..++|++++|+|+++
T Consensus 112 ----~~~~~~~~~~l~~~---~gi~~tilRp~~f~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~v~~~Dva~~~ 178 (285)
T TIGR03649 112 ----GPAMGQVHAHLDSL---GGVEYTVLRPTWFMENFSEEF------HVEAIRKENKIYSATGDGKIPFVSADDIARVA 178 (285)
T ss_pred ----CchHHHHHHHHHhc---cCCCEEEEeccHHhhhhcccc------cccccccCCeEEecCCCCccCcccHHHHHHHH
Confidence 01122334444221 489999999998885431110 0011111 11 12367889999999999999
Q ss_pred HHhhcCCCC-CccEEEec-CCCCHHHHHHHHHHhCCC
Q 023515 241 IQAFEVPSA-NGRYCLVE-RVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 241 ~~~~~~~~~-~g~~~~~~-~~~t~~e~~~~i~~~~~~ 275 (281)
..++..+.. ++.|++.+ +.+|+.|+++.+.+.+|.
T Consensus 179 ~~~l~~~~~~~~~~~l~g~~~~s~~eia~~l~~~~g~ 215 (285)
T TIGR03649 179 YRALTDKVAPNTDYVVLGPELLTYDDVAEILSRVLGR 215 (285)
T ss_pred HHHhcCCCcCCCeEEeeCCccCCHHHHHHHHHHHhCC
Confidence 999987654 45788875 899999999999999985
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-24 Score=178.25 Aligned_cols=224 Identities=15% Similarity=0.126 Sum_probs=157.1
Q ss_pred chhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCc-chhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-
Q 023515 3 SVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP-KKTRHLLALDGASERLQLFKANLLEEGSFDSIVD- 80 (281)
Q Consensus 3 ~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~- 80 (281)
||..+++|+++||||+|+||++++++|+++|++|++++|+.++. ..+.+..... ..++.++++|++|.+++.++++
T Consensus 2 ~~~~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~i~~~~~~ 79 (254)
T PRK06114 2 QLFDLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAA--GRRAIQIAADVTSKADLRAAVAR 79 (254)
T ss_pred CccCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHH
Confidence 34557789999999999999999999999999999999976432 2222211111 2467889999999988877665
Q ss_pred ------CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCC
Q 023515 81 ------GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPD 146 (281)
Q Consensus 81 ------~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~ 146 (281)
++|+||||||.... ...+.+++.+++|+.++..+++++.+.+ +.+++|++||..+..+.+..
T Consensus 80 ~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~---- 155 (254)
T PRK06114 80 TEAELGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGGSIVNIASMSGIIVNRGL---- 155 (254)
T ss_pred HHHHcCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcEEEEECchhhcCCCCCC----
Confidence 47999999986321 2234567889999999999988876532 34689999998765422110
Q ss_pred eeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCC
Q 023515 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY 223 (281)
Q Consensus 147 ~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~ 223 (281)
....|+.+|++.+.+++.++.+ .|+++++++||.+.++..... ............. +.
T Consensus 156 ----------------~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~PG~i~t~~~~~~--~~~~~~~~~~~~~-p~ 216 (254)
T PRK06114 156 ----------------LQAHYNASKAGVIHLSKSLAMEWVGRGIRVNSISPGYTATPMNTRP--EMVHQTKLFEEQT-PM 216 (254)
T ss_pred ----------------CcchHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeecCccCcccccc--cchHHHHHHHhcC-CC
Confidence 0134999999999999999875 489999999999998863311 1111111121111 11
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCCC--CccEEE
Q 023515 224 PNVTFGWVNVKDVANAHIQAFEVPSA--NGRYCL 255 (281)
Q Consensus 224 ~~~~~~~i~~~D~a~~i~~~~~~~~~--~g~~~~ 255 (281)
..+..++|++.++++++.+... .|+.+.
T Consensus 217 ----~r~~~~~dva~~~~~l~s~~~~~~tG~~i~ 246 (254)
T PRK06114 217 ----QRMAKVDEMVGPAVFLLSDAASFCTGVDLL 246 (254)
T ss_pred ----CCCcCHHHHHHHHHHHcCccccCcCCceEE
Confidence 2356899999999999975432 454433
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-24 Score=181.05 Aligned_cols=224 Identities=16% Similarity=0.140 Sum_probs=156.3
Q ss_pred hhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 4 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
|..++++++|||||+|+||++++++|+++|++|++++|+.+....+..... ..++.++.+|++|++.+..+++
T Consensus 6 ~~~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (264)
T PRK12829 6 LKPLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLP----GAKVTATVADVADPAQVERVFDTAV 81 (264)
T ss_pred hhccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh----cCceEEEEccCCCHHHHHHHHHHHH
Confidence 345678999999999999999999999999999999997654433222211 1256889999999988877664
Q ss_pred ----CCcEeEEecccCCC------CCCCccchhhhhHHHHHHHHHHHhhhC---CCc-cEEEEeccceeeecCCCCCCCC
Q 023515 81 ----GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKF---PSI-KRVVLTSSMAAVLNTGKPRTPD 146 (281)
Q Consensus 81 ----~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~-~~~v~~SS~~~~~~~~~~~~~~ 146 (281)
++|+|||+||.... ...+.++..+++|+.++.++++++.+. .+. ++|+++||..+..+.+
T Consensus 82 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~~~~~~~------ 155 (264)
T PRK12829 82 ERFGGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVAGRLGYP------ 155 (264)
T ss_pred HHhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEecccccccCCC------
Confidence 68999999986421 123345688999999999999988642 133 5788888865544221
Q ss_pred eeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCc--------cHHHHHH
Q 023515 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNT--------SAAAVLS 215 (281)
Q Consensus 147 ~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~--------~~~~~~~ 215 (281)
....|+.+|.+.|.+++.++.+. +++++++|||.++||........ .......
T Consensus 156 ----------------~~~~y~~~K~a~~~~~~~l~~~~~~~~i~~~~l~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (264)
T PRK12829 156 ----------------GRTPYAASKWAVVGLVKSLAIELGPLGIRVNAILPGIVRGPRMRRVIEARAQQLGIGLDEMEQE 219 (264)
T ss_pred ----------------CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcCChHHHHHhhhhhhccCCChhHHHHH
Confidence 11349999999999999987754 89999999999999863221100 0000011
Q ss_pred HHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCc-cEEEecC
Q 023515 216 LIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVER 258 (281)
Q Consensus 216 ~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~~ 258 (281)
.... .....+++++|+|+++..++.... ..| .|++.++
T Consensus 220 ~~~~-----~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~i~~g 260 (264)
T PRK12829 220 YLEK-----ISLGRMVEPEDIAATALFLASPAARYITGQAISVDGN 260 (264)
T ss_pred HHhc-----CCCCCCCCHHHHHHHHHHHcCccccCccCcEEEeCCC
Confidence 1111 112358999999999999986432 234 5666543
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-24 Score=177.77 Aligned_cols=223 Identities=14% Similarity=0.102 Sum_probs=159.3
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
++++|+++||||+|+||++++++|+++|++|++++|+.++. . ...++.++++|+++++++.++++
T Consensus 3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~~-~---------~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 72 (252)
T PRK07856 3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPET-V---------DGRPAEFHAADVRDPDQVAALVDAIVER 72 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhhh-h---------cCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999976431 0 12367899999999988887765
Q ss_pred --CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC----CccEEEEeccceeeecCCCCCCCCeee
Q 023515 81 --GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP----SIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (281)
Q Consensus 81 --~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (281)
++|+||||||... +...+.++..+++|+.++..+++++.+.+ +.++||++||..+..+.+
T Consensus 73 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~~--------- 143 (252)
T PRK07856 73 HGRLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGRRPSP--------- 143 (252)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccCCCCC---------
Confidence 4699999998632 12233466889999999999999988632 236899999987654211
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc--CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCC
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK--SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
....|+.+|.+.+.+++.++.++ .++++.++||.+.++....... ............+ .
T Consensus 144 -------------~~~~Y~~sK~a~~~l~~~la~e~~~~i~v~~i~Pg~v~t~~~~~~~~-~~~~~~~~~~~~~-----~ 204 (252)
T PRK07856 144 -------------GTAAYGAAKAGLLNLTRSLAVEWAPKVRVNAVVVGLVRTEQSELHYG-DAEGIAAVAATVP-----L 204 (252)
T ss_pred -------------CCchhHHHHHHHHHHHHHHHHHhcCCeEEEEEEeccccChHHhhhcc-CHHHHHHHhhcCC-----C
Confidence 12459999999999999998875 3789999999998875322111 1111222222111 1
Q ss_pred ccceeHHHHHHHHHHhhcCCC--CCccEEEecCCCCHHHHH
Q 023515 228 FGWVNVKDVANAHIQAFEVPS--ANGRYCLVERVSHYSEIV 266 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~~~~t~~e~~ 266 (281)
..+..++|+|+++++++.... ..|..+..++....-.+.
T Consensus 205 ~~~~~p~~va~~~~~L~~~~~~~i~G~~i~vdgg~~~~~~~ 245 (252)
T PRK07856 205 GRLATPADIAWACLFLASDLASYVSGANLEVHGGGERPAFL 245 (252)
T ss_pred CCCcCHHHHHHHHHHHcCcccCCccCCEEEECCCcchHHHH
Confidence 235689999999999997643 356555544444444443
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=181.90 Aligned_cols=216 Identities=20% Similarity=0.173 Sum_probs=153.7
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------- 80 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------- 80 (281)
++++|+||||+|+||++++++|+++|++|++++|+..+... ..+++++++|++|+++++++++
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~----------~~~~~~~~~D~~d~~~~~~~~~~~~~~~g 72 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAP----------IPGVELLELDVTDDASVQAAVDEVIARAG 72 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhccc----------cCCCeeEEeecCCHHHHHHHHHHHHHhCC
Confidence 46789999999999999999999999999999998654322 1357899999999999888876
Q ss_pred CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhC---CCccEEEEeccceeeecCCCCCCCCeeeecC
Q 023515 81 GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (281)
Q Consensus 81 ~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~ 152 (281)
++|+||||||.... ...+.++..+++|+.++.++++++.+. .+.++||++||..++.+.+
T Consensus 73 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~------------ 140 (270)
T PRK06179 73 RIDVLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGSGRIINISSVLGFLPAP------------ 140 (270)
T ss_pred CCCEEEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEECCccccCCCC------------
Confidence 47999999996332 122345688999999999999997553 2567999999986654211
Q ss_pred CCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCc--cHHHHHHHHhCC-CCCCCC
Q 023515 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNT--SAAAVLSLIKGA-QTYPNV 226 (281)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~--~~~~~~~~~~~~-~~~~~~ 226 (281)
....|+.+|.+.+.+++.++.+ .|+++++++||.+.++........ ............ ......
T Consensus 141 ----------~~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (270)
T PRK06179 141 ----------YMALYAASKHAVEGYSESLDHEVRQFGIRVSLVEPAYTKTNFDANAPEPDSPLAEYDRERAVVSKAVAKA 210 (270)
T ss_pred ----------CccHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeCCCcccccccccCCCCCcchhhHHHHHHHHHHHHhc
Confidence 1235999999999999988765 599999999999998753321110 000000000000 000001
Q ss_pred CccceeHHHHHHHHHHhhcCCCCCccEEE
Q 023515 227 TFGWVNVKDVANAHIQAFEVPSANGRYCL 255 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~~~g~~~~ 255 (281)
......++|+|+.++.++..+...-.|..
T Consensus 211 ~~~~~~~~~va~~~~~~~~~~~~~~~~~~ 239 (270)
T PRK06179 211 VKKADAPEVVADTVVKAALGPWPKMRYTA 239 (270)
T ss_pred cccCCCHHHHHHHHHHHHcCCCCCeeEec
Confidence 12246899999999999987654445654
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-24 Score=181.88 Aligned_cols=224 Identities=20% Similarity=0.154 Sum_probs=156.8
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++|+++||||+|+||++++++|+++|++|++++|+....+.+.... ....++.++++|++|.+++.++++
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 91 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSL---GGEPNVCFFHCDVTVEDDVSRAVDFTVDK 91 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHh---cCCCceEEEEeecCCHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999999998765433322221 112468899999999998888776
Q ss_pred --CCcEeEEecccCCC-------CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCee
Q 023515 81 --GCDGVCHTASPFYH-------DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVV 148 (281)
Q Consensus 81 --~~d~Vih~a~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (281)
++|+||||||.... ...+.++..+++|+.++.++++++.+.+ +.+++|++||..+..+...
T Consensus 92 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~------- 164 (280)
T PLN02253 92 FGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASAIGGLG------- 164 (280)
T ss_pred hCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhcccCCC-------
Confidence 68999999986321 1123466899999999999999888642 3468999999776542210
Q ss_pred eecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCC---ccHHHHHH---HHhC
Q 023515 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLN---TSAAAVLS---LIKG 219 (281)
Q Consensus 149 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~---~~~~~~~~---~~~~ 219 (281)
...|+.+|.+.|.+++.++.++ |+++++++||.+.++....... .....+.. ....
T Consensus 165 ---------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (280)
T PLN02253 165 ---------------PHAYTGSKHAVLGLTRSVAAELGKHGIRVNCVSPYAVPTALALAHLPEDERTEDALAGFRAFAGK 229 (280)
T ss_pred ---------------CcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccccccccccccchhhhhhhhHHHhhc
Confidence 1249999999999999998865 7999999999998874321110 00111111 1111
Q ss_pred CCCCCCCCccceeHHHHHHHHHHhhcCCCC--Cc-cEEEec
Q 023515 220 AQTYPNVTFGWVNVKDVANAHIQAFEVPSA--NG-RYCLVE 257 (281)
Q Consensus 220 ~~~~~~~~~~~i~~~D~a~~i~~~~~~~~~--~g-~~~~~~ 257 (281)
... .....++++|+|+++++++..... .| .+.+.|
T Consensus 230 ~~~---l~~~~~~~~dva~~~~~l~s~~~~~i~G~~i~vdg 267 (280)
T PLN02253 230 NAN---LKGVELTVDDVANAVLFLASDEARYISGLNLMIDG 267 (280)
T ss_pred CCC---CcCCCCCHHHHHHHHHhhcCcccccccCcEEEECC
Confidence 100 112247899999999999975432 45 444443
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-24 Score=201.79 Aligned_cols=223 Identities=15% Similarity=0.197 Sum_probs=155.0
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--CCcEe
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGV 85 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~V 85 (281)
+.|+||||||+||||++|++.|.++|++|... .+|++|.+.+..+++ ++|+|
T Consensus 379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~~v~~~--------------------------~~~l~d~~~v~~~i~~~~pd~V 432 (668)
T PLN02260 379 PSLKFLIYGRTGWIGGLLGKLCEKQGIAYEYG--------------------------KGRLEDRSSLLADIRNVKPTHV 432 (668)
T ss_pred CCceEEEECCCchHHHHHHHHHHhCCCeEEee--------------------------ccccccHHHHHHHHHhhCCCEE
Confidence 45789999999999999999999999887311 135667777777765 78999
Q ss_pred EEecccCCCC----CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCC-CCCCCeeeecCCCCChhhh
Q 023515 86 CHTASPFYHD----AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGK-PRTPDVVVDETWFSDPEVC 160 (281)
Q Consensus 86 ih~a~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~~~~~~~e~~~~~~~~~ 160 (281)
||+||..... .+...+..+++|+.++.+|+++|++. +++ +|++||..+|.+... +.....+++|++.+.|
T Consensus 433 ih~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~-g~~-~v~~Ss~~v~~~~~~~~~~~~~p~~E~~~~~~--- 507 (668)
T PLN02260 433 FNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCREN-GLL-MMNFATGCIFEYDAKHPEGSGIGFKEEDKPNF--- 507 (668)
T ss_pred EECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHc-CCe-EEEEcccceecCCcccccccCCCCCcCCCCCC---
Confidence 9999975321 12344588999999999999999998 774 777888666643211 1111235677665433
Q ss_pred ccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeHHHHHHHH
Q 023515 161 KQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAH 240 (281)
Q Consensus 161 ~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i 240 (281)
+.+.|+.||.++|.+++.+. +..++|+..+|++..... ..++..+.+...... ...+..+.+|++.++
T Consensus 508 --~~~~Yg~sK~~~E~~~~~~~-----~~~~~r~~~~~~~~~~~~----~nfv~~~~~~~~~~~-vp~~~~~~~~~~~~~ 575 (668)
T PLN02260 508 --TGSFYSKTKAMVEELLREYD-----NVCTLRVRMPISSDLSNP----RNFITKISRYNKVVN-IPNSMTVLDELLPIS 575 (668)
T ss_pred --CCChhhHHHHHHHHHHHhhh-----hheEEEEEEecccCCCCc----cHHHHHHhccceeec-cCCCceehhhHHHHH
Confidence 23579999999999997763 345667666775432111 133444444332110 123467889999998
Q ss_pred HHhhcCCCCCccEEEec-CCCCHHHHHHHHHHhCC
Q 023515 241 IQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYP 274 (281)
Q Consensus 241 ~~~~~~~~~~g~~~~~~-~~~t~~e~~~~i~~~~~ 274 (281)
+.+++.. .+|+||+++ +.+||+|+++.|++.++
T Consensus 576 ~~l~~~~-~~giyni~~~~~~s~~e~a~~i~~~~~ 609 (668)
T PLN02260 576 IEMAKRN-LRGIWNFTNPGVVSHNEILEMYKDYID 609 (668)
T ss_pred HHHHHhC-CCceEEecCCCcCcHHHHHHHHHHhcC
Confidence 8888743 358999985 67999999999999764
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=179.25 Aligned_cols=221 Identities=18% Similarity=0.120 Sum_probs=153.5
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEE-EcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKAS-VRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
|.+++++||||+|+||++++++|+++|++|+++ .|+..+.+.+....... ..++.++++|++|++++..+++
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEAL--GRKALAVKANVGDVEKIKEMFAQIDEE 79 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 347899999999999999999999999998774 56554333322221111 2468899999999998887775
Q ss_pred --CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 --~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|+|||+||.... ...+.++..+++|+.++.++++++.+.+ +.++||++||..+..+.+
T Consensus 80 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~---------- 149 (250)
T PRK08063 80 FGRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSSLGSIRYLE---------- 149 (250)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhccCCC----------
Confidence 58999999985221 1122344578899999999999998752 346999999976543111
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
....|+.+|.+.+.+++.++.+ .|+++++++||.+.++..... .......... ..... .
T Consensus 150 ------------~~~~y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~t~~~~~~-~~~~~~~~~~-~~~~~----~ 211 (250)
T PRK08063 150 ------------NYTTVGVSKAALEALTRYLAVELAPKGIAVNAVSGGAVDTDALKHF-PNREELLEDA-RAKTP----A 211 (250)
T ss_pred ------------CccHHHHHHHHHHHHHHHHHHHHhHhCeEEEeEecCcccCchhhhc-cCchHHHHHH-hcCCC----C
Confidence 1234999999999999998875 489999999999987653221 1111111111 11111 2
Q ss_pred ccceeHHHHHHHHHHhhcCCCC--Cc-cEEEec
Q 023515 228 FGWVNVKDVANAHIQAFEVPSA--NG-RYCLVE 257 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~~--~g-~~~~~~ 257 (281)
..+++++|+|+++++++..+.. .| .+++.+
T Consensus 212 ~~~~~~~dva~~~~~~~~~~~~~~~g~~~~~~g 244 (250)
T PRK08063 212 GRMVEPEDVANAVLFLCSPEADMIRGQTIIVDG 244 (250)
T ss_pred CCCcCHHHHHHHHHHHcCchhcCccCCEEEECC
Confidence 2478999999999999976432 35 444443
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=183.93 Aligned_cols=172 Identities=14% Similarity=0.130 Sum_probs=130.0
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.++++++|||||+|+||++++++|+++|++|++++|+.+............ ..++.++.+|++|.+++.++++
T Consensus 3 ~~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~ 80 (287)
T PRK06194 3 DFAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQ--GAEVLGVRTDVSDAAQVEALADAALER 80 (287)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999999999765433332222111 2468889999999998888776
Q ss_pred --CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---Cc------cEEEEeccceeeecCCCCCC
Q 023515 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SI------KRVVLTSSMAAVLNTGKPRT 144 (281)
Q Consensus 81 --~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~------~~~v~~SS~~~~~~~~~~~~ 144 (281)
++|+||||||.... ...+.++..+++|+.++.++++++.+.+ .. +++|++||..++++.+
T Consensus 81 ~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~---- 156 (287)
T PRK06194 81 FGAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLLAPP---- 156 (287)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCCC----
Confidence 47999999997432 1224456779999999999888865431 21 5899999987765221
Q ss_pred CCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc-----CCcEEEEcCCcccCCC
Q 023515 145 PDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK-----SIDLVTINPAMVIGPL 201 (281)
Q Consensus 145 ~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----g~~~~~irp~~v~g~~ 201 (281)
....|+.+|++.+.+++.++.++ ++++.++.||.+.++.
T Consensus 157 ------------------~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~pg~i~t~~ 200 (287)
T PRK06194 157 ------------------AMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLCPYFVPTGI 200 (287)
T ss_pred ------------------CCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEeCcccCcc
Confidence 12459999999999999988764 4778888998887654
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-24 Score=178.77 Aligned_cols=221 Identities=16% Similarity=0.112 Sum_probs=157.3
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------- 80 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------- 80 (281)
+++++|||||+|+||++++++|+++|++|++++|+.+....+....... ..++.++.+|++|.+++.++++
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 79 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAK--GGNAQAFACDITDRDSVDTAVAAAEQALG 79 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 5789999999999999999999999999999999875544433322211 2468899999999988887765
Q ss_pred CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeecC
Q 023515 81 GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (281)
Q Consensus 81 ~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~ 152 (281)
++|+|||+|+.... ...+.++..+++|+.++.++++++.+.+ +.+++|++||..++.+.+
T Consensus 80 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss~~~~~~~~------------ 147 (250)
T TIGR03206 80 PVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIASDAARVGSS------------ 147 (250)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECchhhccCCC------------
Confidence 58999999985321 1223345779999999999999887531 457899999987765221
Q ss_pred CCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCC--ccHH-HHHHHHhCCCCCCCC
Q 023515 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLN--TSAA-AVLSLIKGAQTYPNV 226 (281)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~--~~~~-~~~~~~~~~~~~~~~ 226 (281)
....|+.+|++.+.+++.++++. ++++++++||.++++....... .... .........+
T Consensus 148 ----------~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 212 (250)
T TIGR03206 148 ----------GEAVYAACKGGLVAFSKTMAREHARHGITVNVVCPGPTDTALLDDICGGAENPEKLREAFTRAIP----- 212 (250)
T ss_pred ----------CCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEecCcccchhHHhhhhccCChHHHHHHHHhcCC-----
Confidence 12349999999999999988764 8999999999999885322110 0111 1122222111
Q ss_pred CccceeHHHHHHHHHHhhcCCCC--Cc-cEEEec
Q 023515 227 TFGWVNVKDVANAHIQAFEVPSA--NG-RYCLVE 257 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~~--~g-~~~~~~ 257 (281)
...+..++|+|+++.+++..... .| .+.+.+
T Consensus 213 ~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~ 246 (250)
T TIGR03206 213 LGRLGQPDDLPGAILFFSSDDASFITGQVLSVSG 246 (250)
T ss_pred ccCCcCHHHHHHHHHHHcCcccCCCcCcEEEeCC
Confidence 12356899999999999876532 35 455443
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-24 Score=179.34 Aligned_cols=208 Identities=17% Similarity=0.129 Sum_probs=151.3
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
++++|+++||||+|+||++++++|+++|++|++++|+..+...+.... ..++.++++|+++.+++.++++
T Consensus 7 ~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (255)
T PRK05717 7 GHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKAL-----GENAWFIAMDVADEAQVAAGVAEVLGQ 81 (255)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHc-----CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 466899999999999999999999999999999988765433322111 1357889999999888766554
Q ss_pred --CCcEeEEecccCCCC-------CCCccchhhhhHHHHHHHHHHHhhhCC--CccEEEEeccceeeecCCCCCCCCeee
Q 023515 81 --GCDGVCHTASPFYHD-------AKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (281)
Q Consensus 81 --~~d~Vih~a~~~~~~-------~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (281)
++|+||||||..... ..+.++..+++|+.++.++++++.+.+ ..+++|++||..++.+.+
T Consensus 82 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~~~~~--------- 152 (255)
T PRK05717 82 FGRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRARQSEP--------- 152 (255)
T ss_pred hCCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhcCCCC---------
Confidence 479999999964321 223456889999999999999998642 236899999987765221
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc--CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCC
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK--SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
....|+.+|++.+.+++.+++++ ++++++++||.+.++...... . ..+........ + .
T Consensus 153 -------------~~~~Y~~sKaa~~~~~~~la~~~~~~i~v~~i~Pg~i~t~~~~~~~--~-~~~~~~~~~~~--~--~ 212 (255)
T PRK05717 153 -------------DTEAYAASKGGLLALTHALAISLGPEIRVNAVSPGWIDARDPSQRR--A-EPLSEADHAQH--P--A 212 (255)
T ss_pred -------------CCcchHHHHHHHHHHHHHHHHHhcCCCEEEEEecccCcCCcccccc--c-hHHHHHHhhcC--C--C
Confidence 12349999999999999998876 589999999999987532211 0 11111111111 1 1
Q ss_pred ccceeHHHHHHHHHHhhcCC
Q 023515 228 FGWVNVKDVANAHIQAFEVP 247 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~ 247 (281)
..+.+++|+|.++.+++...
T Consensus 213 ~~~~~~~~va~~~~~l~~~~ 232 (255)
T PRK05717 213 GRVGTVEDVAAMVAWLLSRQ 232 (255)
T ss_pred CCCcCHHHHHHHHHHHcCch
Confidence 23679999999999998754
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-24 Score=178.19 Aligned_cols=211 Identities=17% Similarity=0.120 Sum_probs=148.0
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEc-CCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVR-DPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
+++|+++||||+|+||++++++|+++|++|++..+ +.++...+...... ....+..+.+|+++.+++..+++
T Consensus 2 ~~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (252)
T PRK12747 2 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQS--NGGSAFSIGANLESLHGVEALYSSLDNE 79 (252)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHh--cCCceEEEecccCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999988754 33332222222111 12357788999998876554332
Q ss_pred --------CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCCCCC
Q 023515 81 --------GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPD 146 (281)
Q Consensus 81 --------~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~ 146 (281)
++|++|||||... +...+.|+..+++|+.++..+++++.+.+ +..+||++||..+..+.+
T Consensus 80 ~~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~------ 153 (252)
T PRK12747 80 LQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRISLP------ 153 (252)
T ss_pred hhhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCcccccCCC------
Confidence 5899999999532 11223467888999999999999998863 336899999987654211
Q ss_pred eeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCC
Q 023515 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY 223 (281)
Q Consensus 147 ~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~ 223 (281)
....|+.||++.+.+++.++.++ |++++++.||.+.++....... . ...........
T Consensus 154 ----------------~~~~Y~~sKaa~~~~~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~-~-~~~~~~~~~~~-- 213 (252)
T PRK12747 154 ----------------DFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFIKTDMNAELLS-D-PMMKQYATTIS-- 213 (252)
T ss_pred ----------------CchhHHHHHHHHHHHHHHHHHHHhHcCCEEEEEecCCccCchhhhccc-C-HHHHHHHHhcC--
Confidence 12359999999999999988764 8999999999999885322111 1 11111111110
Q ss_pred CCCCccceeHHHHHHHHHHhhcCC
Q 023515 224 PNVTFGWVNVKDVANAHIQAFEVP 247 (281)
Q Consensus 224 ~~~~~~~i~~~D~a~~i~~~~~~~ 247 (281)
....+.+++|+|+++.+++...
T Consensus 214 --~~~~~~~~~dva~~~~~l~s~~ 235 (252)
T PRK12747 214 --AFNRLGEVEDIADTAAFLASPD 235 (252)
T ss_pred --cccCCCCHHHHHHHHHHHcCcc
Confidence 1234789999999999998754
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-24 Score=177.05 Aligned_cols=219 Identities=17% Similarity=0.152 Sum_probs=156.9
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++|+|+||||+|+||++++++|+++|++|++++|+.. ..+....... ..++.++++|+++.+++..+++
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~--~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEP--SETQQQVEAL--GRRFLSLTADLSDIEAIKALVDSAVEEF 78 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchH--HHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 56899999999999999999999999999999998652 1221211111 2468899999999988876654
Q ss_pred -CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---C-ccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---S-IKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 -~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~-~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|++||+||.... ...+.+++.+++|+.++.++++++.+.+ + .+++|++||..++.+.+
T Consensus 79 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~---------- 148 (248)
T TIGR01832 79 GHIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSFQGGI---------- 148 (248)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhccCCC----------
Confidence 58999999986332 1224566889999999999999987631 2 46899999986654211
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
....|+.+|++.+.+++.+++++ |+++++++||.+.++....... ............ ..
T Consensus 149 ------------~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~-~~~~~~~~~~~~-----~~ 210 (248)
T TIGR01832 149 ------------RVPSYTASKHGVAGLTKLLANEWAAKGINVNAIAPGYMATNNTQALRA-DEDRNAAILERI-----PA 210 (248)
T ss_pred ------------CCchhHHHHHHHHHHHHHHHHHhCccCcEEEEEEECcCcCcchhcccc-ChHHHHHHHhcC-----CC
Confidence 11249999999999999998874 8999999999999875321111 111111111111 12
Q ss_pred ccceeHHHHHHHHHHhhcCCCC--CccEEEec
Q 023515 228 FGWVNVKDVANAHIQAFEVPSA--NGRYCLVE 257 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~~--~g~~~~~~ 257 (281)
..|++++|+|+++++++..... .|.++..+
T Consensus 211 ~~~~~~~dva~~~~~l~s~~~~~~~G~~i~~d 242 (248)
T TIGR01832 211 GRWGTPDDIGGPAVFLASSASDYVNGYTLAVD 242 (248)
T ss_pred CCCcCHHHHHHHHHHHcCccccCcCCcEEEeC
Confidence 4588999999999999975433 46665544
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=179.91 Aligned_cols=230 Identities=17% Similarity=0.190 Sum_probs=161.2
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
++++++++||||+|+||++++++|+++|++|++++|++++......+. . ...++.++++|+++++++..+++
T Consensus 4 ~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~-~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (258)
T PRK08628 4 NLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELR-A--LQPRAEFVQVDLTDDAQCRDAVEQTVAK 80 (258)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHH-h--cCCceEEEEccCCCHHHHHHHHHHHHHh
Confidence 367899999999999999999999999999999999876542222221 1 12468899999999988887775
Q ss_pred --CCcEeEEecccCCC----CCCCccchhhhhHHHHHHHHHHHhhhCC--CccEEEEeccceeeecCCCCCCCCeeeecC
Q 023515 81 --GCDGVCHTASPFYH----DAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (281)
Q Consensus 81 --~~d~Vih~a~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~ 152 (281)
++|+|||+||.... ...+.++..+++|+.++.++++.+.+.+ +.++||++||..++.+.+
T Consensus 81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~------------ 148 (258)
T PRK08628 81 FGRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNISSKTALTGQG------------ 148 (258)
T ss_pred cCCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEECCHHhccCCC------------
Confidence 57999999985221 1124566889999999999999987642 346899999987764211
Q ss_pred CCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCC---ccHHHHHHHHhCCCCCCCC
Q 023515 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLN---TSAAAVLSLIKGAQTYPNV 226 (281)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 226 (281)
....|+.+|.+.+.+++.++.+ .+++++.++||.+++|....... ............. ..+
T Consensus 149 ----------~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~-~~~-- 215 (258)
T PRK08628 149 ----------GTSGYAAAKGAQLALTREWAVALAKDGVRVNAVIPAEVMTPLYENWIATFDDPEAKLAAITAKI-PLG-- 215 (258)
T ss_pred ----------CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCHHHHHHhhhccCHHHHHHHHHhcC-Ccc--
Confidence 1234999999999999998764 48999999999999985321100 0011111121111 111
Q ss_pred CccceeHHHHHHHHHHhhcCCC--CCc-cEEEecCCCCHHH
Q 023515 227 TFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVERVSHYSE 264 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~~~~t~~e 264 (281)
..++.++|+|+++++++.... ..| .+.+.++...+++
T Consensus 216 -~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~gg~~~~~~ 255 (258)
T PRK08628 216 -HRMTTAEEIADTAVFLLSERSSHTTGQWLFVDGGYVHLDR 255 (258)
T ss_pred -ccCCCHHHHHHHHHHHhChhhccccCceEEecCCcccccc
Confidence 246889999999999998653 345 4444444444443
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.9e-24 Score=177.40 Aligned_cols=214 Identities=17% Similarity=0.141 Sum_probs=153.0
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
++++|+++||||+|+||++++++|+++|++|++++|++++.+.+....... ..++.++.+|++++++++++++
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAE--GGEAVALAGDVRDEAYAKALVALAVER 80 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 456899999999999999999999999999999999876544433322111 2468889999999988877765
Q ss_pred --CCcEeEEecccCCC------CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeee
Q 023515 81 --GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (281)
Q Consensus 81 --~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (281)
++|++||+||.... ...+.++..+++|+.++..+++++.+.+ +.+++|++||..++.. +.+
T Consensus 81 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~~~iv~~sS~~~~~~-~~~------- 152 (254)
T PRK07478 81 FGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGGGSLIFTSTFVGHTA-GFP------- 152 (254)
T ss_pred cCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEechHhhcc-CCC-------
Confidence 68999999986321 1224467889999999998888776532 4568999999765420 000
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCC
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (281)
....|+.||++.+.+++.++.++ |+++++++||.+.++....... ... ......... .
T Consensus 153 -------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~-~~~-~~~~~~~~~----~ 213 (254)
T PRK07478 153 -------------GMAAYAASKAGLIGLTQVLAAEYGAQGIRVNALLPGGTDTPMGRAMGD-TPE-ALAFVAGLH----A 213 (254)
T ss_pred -------------CcchhHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCcccCcccccccC-CHH-HHHHHHhcC----C
Confidence 12349999999999999998865 7999999999998874321111 111 111111111 1
Q ss_pred CccceeHHHHHHHHHHhhcCCC
Q 023515 227 TFGWVNVKDVANAHIQAFEVPS 248 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~ 248 (281)
...+..++|+|+++++++.+..
T Consensus 214 ~~~~~~~~~va~~~~~l~s~~~ 235 (254)
T PRK07478 214 LKRMAQPEEIAQAALFLASDAA 235 (254)
T ss_pred CCCCcCHHHHHHHHHHHcCchh
Confidence 1235689999999999997643
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-24 Score=177.82 Aligned_cols=220 Identities=21% Similarity=0.189 Sum_probs=157.9
Q ss_pred hhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 4 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
|+.+++|+++||||+|+||++++++|+++|++|++++|++++...+...... ...++.++++|++|++++.++++
T Consensus 2 ~~~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~ 79 (250)
T PRK12939 2 ASNLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEA--AGGRAHAIAADLADPASVQRFFDAAA 79 (250)
T ss_pred CCCCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 4456689999999999999999999999999999999876544433222111 12468899999999988887764
Q ss_pred ----CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCee
Q 023515 81 ----GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVV 148 (281)
Q Consensus 81 ----~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (281)
++|+|||+||.... ...+.++..++.|+.++.++++++.+.+ +.+++|++||.....+.+
T Consensus 80 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------- 151 (250)
T PRK12939 80 AALGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLASDTALWGAP-------- 151 (250)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECchhhccCCC--------
Confidence 68999999986322 1223456778899999999999988642 245899999976654211
Q ss_pred eecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCC
Q 023515 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (281)
Q Consensus 149 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (281)
....|+.+|.+.+.+++.++.+ .+++++.++||.+.++....... .......... .
T Consensus 152 --------------~~~~y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~~--~~~~~~~~~~-----~ 210 (250)
T PRK12939 152 --------------KLGAYVASKGAVIGMTRSLARELGGRGITVNAIAPGLTATEATAYVPA--DERHAYYLKG-----R 210 (250)
T ss_pred --------------CcchHHHHHHHHHHHHHHHHHHHhhhCEEEEEEEECCCCCccccccCC--hHHHHHHHhc-----C
Confidence 1134999999999999988765 47999999999998876432111 0111222221 1
Q ss_pred CCccceeHHHHHHHHHHhhcCCC--CCccEE
Q 023515 226 VTFGWVNVKDVANAHIQAFEVPS--ANGRYC 254 (281)
Q Consensus 226 ~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~ 254 (281)
....+++++|+|++++.++.... ..|.++
T Consensus 211 ~~~~~~~~~dva~~~~~l~~~~~~~~~G~~i 241 (250)
T PRK12939 211 ALERLQVPDDVAGAVLFLLSDAARFVTGQLL 241 (250)
T ss_pred CCCCCCCHHHHHHHHHHHhCccccCccCcEE
Confidence 23457899999999999998643 245443
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=171.00 Aligned_cols=183 Identities=27% Similarity=0.384 Sum_probs=141.0
Q ss_pred EEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEeccc
Q 023515 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTASP 91 (281)
Q Consensus 12 ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a~~ 91 (281)
|+|+||||++|++++++|+++|++|+++.|++++... ..+++++++|+.|++.+.++++++|+|||+++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~----------~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED----------SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH----------CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc----------ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 7999999999999999999999999999999875433 257999999999999999999999999999975
Q ss_pred CCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchhhhhH
Q 023515 92 FYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSK 171 (281)
Q Consensus 92 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK 171 (281)
... +...+.++++++++. +++++|++||.+.+... ......+..... ..|...|
T Consensus 71 ~~~------------~~~~~~~~~~a~~~~-~~~~~v~~s~~~~~~~~-----~~~~~~~~~~~~--------~~~~~~~ 124 (183)
T PF13460_consen 71 PPK------------DVDAAKNIIEAAKKA-GVKRVVYLSSAGVYRDP-----PGLFSDEDKPIF--------PEYARDK 124 (183)
T ss_dssp TTT------------HHHHHHHHHHHHHHT-TSSEEEEEEETTGTTTC-----TSEEEGGTCGGG--------HHHHHHH
T ss_pred hcc------------ccccccccccccccc-ccccceeeeccccCCCC-----Ccccccccccch--------hhhHHHH
Confidence 332 278889999999998 89999999998765411 111111111111 2388999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcC
Q 023515 172 TLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEV 246 (281)
Q Consensus 172 ~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~ 246 (281)
..+|++++ +.+++++++||+.+||+.... ..... ..+.....+|+.+|+|++++.++++
T Consensus 125 ~~~e~~~~----~~~~~~~ivrp~~~~~~~~~~-~~~~~-----------~~~~~~~~~i~~~DvA~~~~~~l~~ 183 (183)
T PF13460_consen 125 REAEEALR----ESGLNWTIVRPGWIYGNPSRS-YRLIK-----------EGGPQGVNFISREDVAKAIVEALEN 183 (183)
T ss_dssp HHHHHHHH----HSTSEEEEEEESEEEBTTSSS-EEEES-----------STSTTSHCEEEHHHHHHHHHHHHH-
T ss_pred HHHHHHHH----hcCCCEEEEECcEeEeCCCcc-eeEEe-----------ccCCCCcCcCCHHHHHHHHHHHhCC
Confidence 98888873 469999999999999986331 11000 0234556899999999999998864
|
... |
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-24 Score=178.67 Aligned_cols=219 Identities=17% Similarity=0.160 Sum_probs=156.3
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++|+++||||+++||++++++|+++|++|++++|+.. +.+...... ...++.++++|+++.+++.++++
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (251)
T PRK12481 5 DLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEA--LGRKFHFITADLIQQKDIDSIVSQAVEV 80 (251)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHH--cCCeEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999988642 122222111 12468899999999998888775
Q ss_pred --CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---C-ccEEEEeccceeeecCCCCCCCCeee
Q 023515 81 --GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---S-IKRVVLTSSMAAVLNTGKPRTPDVVV 149 (281)
Q Consensus 81 --~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~-~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (281)
++|++|||||... ....+.|+..+++|+.++..+++++.+.+ + .+++|++||..++.+..
T Consensus 81 ~g~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~~--------- 151 (251)
T PRK12481 81 MGHIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQGGI--------- 151 (251)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcCCCC---------
Confidence 5899999998632 22345677899999999999999987642 2 36899999987664211
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCC
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (281)
....|+.+|.+.+.+++.++.+ +|+++++++||.+.++...... ............. +
T Consensus 152 -------------~~~~Y~asK~a~~~l~~~la~e~~~~girvn~v~PG~v~t~~~~~~~-~~~~~~~~~~~~~---p-- 212 (251)
T PRK12481 152 -------------RVPSYTASKSAVMGLTRALATELSQYNINVNAIAPGYMATDNTAALR-ADTARNEAILERI---P-- 212 (251)
T ss_pred -------------CCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCCccCchhhcc-cChHHHHHHHhcC---C--
Confidence 1124999999999999988875 4899999999999887532111 1111111222211 1
Q ss_pred CccceeHHHHHHHHHHhhcCCC--CCccEEEe
Q 023515 227 TFGWVNVKDVANAHIQAFEVPS--ANGRYCLV 256 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~ 256 (281)
...+..++|+|+++.+++.... ..|+.+..
T Consensus 213 ~~~~~~peeva~~~~~L~s~~~~~~~G~~i~v 244 (251)
T PRK12481 213 ASRWGTPDDLAGPAIFLSSSASDYVTGYTLAV 244 (251)
T ss_pred CCCCcCHHHHHHHHHHHhCccccCcCCceEEE
Confidence 1236799999999999997543 34544433
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.4e-24 Score=179.27 Aligned_cols=221 Identities=14% Similarity=0.139 Sum_probs=159.4
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC-cchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
.+++|++|||||+|+||++++++|+++|++|++++|+... ...+...... ...++.++.+|+++.+.+.++++
T Consensus 43 ~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~i~~ 120 (290)
T PRK06701 43 KLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEK--EGVKCLLIPGDVSDEAFCKDAVEETVR 120 (290)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHh--cCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999987543 2222222211 12468899999999988877765
Q ss_pred ---CCcEeEEecccCCC------CCCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 ---GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 ---~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|+|||+|+.... ...+.+...+++|+.++.++++++.+.+ ..+++|++||..++.+.+
T Consensus 121 ~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~~~~~~~---------- 190 (290)
T PRK06701 121 ELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITGYEGNE---------- 190 (290)
T ss_pred HcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecccccCCCC----------
Confidence 57999999986321 1223456789999999999999998753 336899999987765221
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
....|+.+|.+.+.+++.++.++ |+++++++||.++++...... ........... ...
T Consensus 191 ------------~~~~Y~~sK~a~~~l~~~la~~~~~~gIrv~~i~pG~v~T~~~~~~~--~~~~~~~~~~~-----~~~ 251 (290)
T PRK06701 191 ------------TLIDYSATKGAIHAFTRSLAQSLVQKGIRVNAVAPGPIWTPLIPSDF--DEEKVSQFGSN-----TPM 251 (290)
T ss_pred ------------CcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCCCCccccccc--CHHHHHHHHhc-----CCc
Confidence 11349999999999999998875 899999999999998643211 11222222111 123
Q ss_pred ccceeHHHHHHHHHHhhcCCCC--Cc-cEEEec
Q 023515 228 FGWVNVKDVANAHIQAFEVPSA--NG-RYCLVE 257 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~~--~g-~~~~~~ 257 (281)
..+.+++|+|+++++++..... .| .+++.+
T Consensus 252 ~~~~~~~dva~~~~~ll~~~~~~~~G~~i~idg 284 (290)
T PRK06701 252 QRPGQPEELAPAYVFLASPDSSYITGQMLHVNG 284 (290)
T ss_pred CCCcCHHHHHHHHHHHcCcccCCccCcEEEeCC
Confidence 4578999999999999986542 45 444443
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.7e-24 Score=176.18 Aligned_cols=220 Identities=17% Similarity=0.158 Sum_probs=157.4
Q ss_pred hccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 5 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
+.+++++++||||+|+||++++++|+++|++|++++|+..+...+.+..... ..++.++++|+.+.+++.++++
T Consensus 4 ~~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (252)
T PRK07035 4 FDLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAA--GGKAEALACHIGEMEQIDALFAHIRE 81 (252)
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999765444333322111 2357889999999988777665
Q ss_pred ---CCcEeEEecccCC------CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCee
Q 023515 81 ---GCDGVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVV 148 (281)
Q Consensus 81 ---~~d~Vih~a~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (281)
++|+|||+|+... ....+.++..+++|+.++..+++++.+.+ +.+++|++||..+..+.+
T Consensus 82 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~-------- 153 (252)
T PRK07035 82 RHGRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVASVNGVSPGD-------- 153 (252)
T ss_pred HcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECchhhcCCCC--------
Confidence 5899999998532 12233456789999999999998886542 457899999976654111
Q ss_pred eecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCC
Q 023515 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (281)
Q Consensus 149 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (281)
....|+.+|++.+.+++.++.++ |++++.+.||.+.++....... ............+
T Consensus 154 --------------~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~i~PG~v~t~~~~~~~~-~~~~~~~~~~~~~---- 214 (252)
T PRK07035 154 --------------FQGIYSITKAAVISMTKAFAKECAPFGIRVNALLPGLTDTKFASALFK-NDAILKQALAHIP---- 214 (252)
T ss_pred --------------CCcchHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeccccCcccccccC-CHHHHHHHHccCC----
Confidence 12459999999999999998764 8999999999998875332211 1122222222111
Q ss_pred CCccceeHHHHHHHHHHhhcCCCC--CccEE
Q 023515 226 VTFGWVNVKDVANAHIQAFEVPSA--NGRYC 254 (281)
Q Consensus 226 ~~~~~i~~~D~a~~i~~~~~~~~~--~g~~~ 254 (281)
...+..++|+|+++++++.+... .|.+.
T Consensus 215 -~~~~~~~~~va~~~~~l~~~~~~~~~g~~~ 244 (252)
T PRK07035 215 -LRRHAEPSEMAGAVLYLASDASSYTTGECL 244 (252)
T ss_pred -CCCcCCHHHHHHHHHHHhCccccCccCCEE
Confidence 22366899999999999986543 45443
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-24 Score=177.57 Aligned_cols=212 Identities=17% Similarity=0.184 Sum_probs=154.6
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++++||||||+|+||++++++|+++|++|++++|+ .+.+.+.++.... ..++.++++|+++.+++.++++
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~i~~~~~~~~~~ 88 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKE--GRKVTFVQVDLTKPESAEKVVKEALEE 88 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999999997 3333333332221 2468899999999988887776
Q ss_pred --CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 --GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 --~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|++||+||... ....+.++..+++|+.++..+++++.+.+ +.+++|++||..++.+.+
T Consensus 89 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 158 (258)
T PRK06935 89 FGKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIINIASMLSFQGGK---------- 158 (258)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEEEECCHHhccCCC----------
Confidence 6799999998632 12234567889999999999998887642 456899999987654211
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
....|+.+|.+.+.+++.+++++ |+++++++||.+.++....... ......+..... ..
T Consensus 159 ------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~-~~~~~~~~~~~~-----~~ 220 (258)
T PRK06935 159 ------------FVPAYTASKHGVAGLTKAFANELAAYNIQVNAIAPGYIKTANTAPIRA-DKNRNDEILKRI-----PA 220 (258)
T ss_pred ------------CchhhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeccccccchhhccc-ChHHHHHHHhcC-----CC
Confidence 11349999999999999998864 7999999999998875332111 111111222111 12
Q ss_pred ccceeHHHHHHHHHHhhcCCC
Q 023515 228 FGWVNVKDVANAHIQAFEVPS 248 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~ 248 (281)
..+..++|++.++.+++....
T Consensus 221 ~~~~~~~dva~~~~~l~s~~~ 241 (258)
T PRK06935 221 GRWGEPDDLMGAAVFLASRAS 241 (258)
T ss_pred CCCCCHHHHHHHHHHHcChhh
Confidence 347889999999999997543
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.7e-24 Score=178.14 Aligned_cols=219 Identities=17% Similarity=0.134 Sum_probs=153.2
Q ss_pred hccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 5 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
..+++|+++||||+|+||++++++|+++|++|++++|+..+.. ..++.++++|++|.+.+.++++
T Consensus 5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~~~-----------~~~~~~~~~D~~~~~~~~~~~~~~~~ 73 (260)
T PRK06523 5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPDDL-----------PEGVEFVAADLTTAEGCAAVARAVLE 73 (260)
T ss_pred cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhhhc-----------CCceeEEecCCCCHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999764321 1357889999999987776553
Q ss_pred ---CCcEeEEecccCC-------CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCe
Q 023515 81 ---GCDGVCHTASPFY-------HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDV 147 (281)
Q Consensus 81 ---~~d~Vih~a~~~~-------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (281)
++|+|||+||... ....+.++..+++|+.++.++++++.+.+ +.+++|++||..+..+..
T Consensus 74 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~------- 146 (260)
T PRK06523 74 RLGGVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGSGVIIHVTSIQRRLPLP------- 146 (260)
T ss_pred HcCCCCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEecccccCCCC-------
Confidence 6899999998532 12234567889999999999988876542 346899999976643110
Q ss_pred eeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCC-------Ccc-HHHHHHH
Q 023515 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTL-------NTS-AAAVLSL 216 (281)
Q Consensus 148 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~-------~~~-~~~~~~~ 216 (281)
.....|+.+|.+.+.+++.++.++ |+++++++||.+.+|...... ... ......+
T Consensus 147 --------------~~~~~Y~~sK~a~~~l~~~~a~~~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (260)
T PRK06523 147 --------------ESTTAYAAAKAALSTYSKSLSKEVAPKGVRVNTVSPGWIETEAAVALAERLAEAAGTDYEGAKQII 212 (260)
T ss_pred --------------CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccHHHHHHHHHhhcCCCHHHHHHHH
Confidence 012459999999999999988764 899999999999988532100 000 0111111
Q ss_pred HhCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCc-cEEEec
Q 023515 217 IKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (281)
Q Consensus 217 ~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~ 257 (281)
.......+ ...+..++|+|+++.+++.... ..| .+.+.+
T Consensus 213 ~~~~~~~p--~~~~~~~~~va~~~~~l~s~~~~~~~G~~~~vdg 254 (260)
T PRK06523 213 MDSLGGIP--LGRPAEPEEVAELIAFLASDRAASITGTEYVIDG 254 (260)
T ss_pred HHHhccCc--cCCCCCHHHHHHHHHHHhCcccccccCceEEecC
Confidence 11100011 1235689999999999997543 245 455544
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-24 Score=178.03 Aligned_cols=227 Identities=16% Similarity=0.107 Sum_probs=156.5
Q ss_pred CcchhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc
Q 023515 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (281)
Q Consensus 1 ~~~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 80 (281)
|-.|+.+++++++||||+|+||++++++|+++|++|++++|+.+............ ..++.++.+|+++.+++.++++
T Consensus 1 ~~~~~~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~i~~~~~ 78 (264)
T PRK07576 1 MTTMFDFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQA--GPEGLGVSADVRDYAAVEAAFA 78 (264)
T ss_pred CCccccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh--CCceEEEECCCCCHHHHHHHHH
Confidence 34455677899999999999999999999999999999999865433322221111 2356889999999988877765
Q ss_pred -------CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC--CccEEEEeccceeeecCCCCCCCC
Q 023515 81 -------GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPD 146 (281)
Q Consensus 81 -------~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~ 146 (281)
++|+|||+|+... ....+.+++.+++|+.++.++++++.+.+ ..++||++||..+..+.+
T Consensus 79 ~~~~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~~~~~~~------ 152 (264)
T PRK07576 79 QIADEFGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQAFVPMP------ 152 (264)
T ss_pred HHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChhhccCCC------
Confidence 4799999997421 12233456788899999999999988742 235899999976543111
Q ss_pred eeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCC
Q 023515 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY 223 (281)
Q Consensus 147 ~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~ 223 (281)
....|+.+|.+.+.+++.++.++ |+++++++||.+.+........ ............ .
T Consensus 153 ----------------~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~pg~~~~t~~~~~~~-~~~~~~~~~~~~--~ 213 (264)
T PRK07576 153 ----------------MQAHVCAAKAGVDMLTRTLALEWGPEGIRVNSIVPGPIAGTEGMARLA-PSPELQAAVAQS--V 213 (264)
T ss_pred ----------------CccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccccCcHHHhhcc-cCHHHHHHHHhc--C
Confidence 12459999999999999987764 7999999999987432111100 001111111111 1
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCC--CCccEEEe
Q 023515 224 PNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLV 256 (281)
Q Consensus 224 ~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~ 256 (281)
....+..++|+|+++++++.... ..|.+...
T Consensus 214 --~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~~ 246 (264)
T PRK07576 214 --PLKRNGTKQDIANAALFLASDMASYITGVVLPV 246 (264)
T ss_pred --CCCCCCCHHHHHHHHHHHcChhhcCccCCEEEE
Confidence 12346789999999999998643 25655444
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6e-24 Score=178.59 Aligned_cols=225 Identities=17% Similarity=0.131 Sum_probs=157.8
Q ss_pred hhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 4 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
+..+++|+++||||+|+||++++++|+++|++|++++|+.+....+....... ..++.++++|+++.+++..+++
T Consensus 5 ~~~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~ 82 (278)
T PRK08277 5 LFSLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAA--GGEALAVKADVLDKESLEQARQQIL 82 (278)
T ss_pred eeccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHH
Confidence 34467899999999999999999999999999999999865444333322211 2468899999999988777654
Q ss_pred ----CCcEeEEecccCCC--------------------CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccc
Q 023515 81 ----GCDGVCHTASPFYH--------------------DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSM 133 (281)
Q Consensus 81 ----~~d~Vih~a~~~~~--------------------~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~ 133 (281)
++|+||||||.... ...+.++..+++|+.++..+++++.+.+ +.++||++||.
T Consensus 83 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~ 162 (278)
T PRK08277 83 EDFGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRKGGNIINISSM 162 (278)
T ss_pred HHcCCCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccc
Confidence 68999999985321 1123466889999999998887776532 45689999998
Q ss_pred eeeecCCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCC----
Q 023515 134 AAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTL---- 206 (281)
Q Consensus 134 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~---- 206 (281)
.++.+.+ ....|+.+|++.+.+++.++.++ |+++++++||.+.++......
T Consensus 163 ~~~~~~~----------------------~~~~Y~~sK~a~~~l~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~~~ 220 (278)
T PRK08277 163 NAFTPLT----------------------KVPAYSAAKAAISNFTQWLAVHFAKVGIRVNAIAPGFFLTEQNRALLFNED 220 (278)
T ss_pred hhcCCCC----------------------CCchhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeccCcCcchhhhhcccc
Confidence 7654211 12349999999999999998875 799999999999988532110
Q ss_pred CccHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcC-CC--CCccEEEec
Q 023515 207 NTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEV-PS--ANGRYCLVE 257 (281)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~-~~--~~g~~~~~~ 257 (281)
.............. ....+..++|+|+++++++.. .. ..|+.+..+
T Consensus 221 ~~~~~~~~~~~~~~-----p~~r~~~~~dva~~~~~l~s~~~~~~~tG~~i~vd 269 (278)
T PRK08277 221 GSLTERANKILAHT-----PMGRFGKPEELLGTLLWLADEKASSFVTGVVLPVD 269 (278)
T ss_pred ccchhHHHHHhccC-----CccCCCCHHHHHHHHHHHcCccccCCcCCCEEEEC
Confidence 00011111111111 123367899999999999886 33 246444443
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-24 Score=177.89 Aligned_cols=222 Identities=17% Similarity=0.133 Sum_probs=158.1
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++|+|+||||+|+||++++++|+++|++|++++|+.++.+.+...... ...++.++++|+++.+++..+++
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~i~~~~~~~~~~ 81 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIRE--AGGEALFVACDVTRDAEVKALVEQTIAA 81 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh--cCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999999987654433322211 12468899999999988887765
Q ss_pred --CCcEeEEecccCCC------CCCCccchhhhhHHHHHHHHHHHhhhC---CCccEEEEeccceeeecCCCCCCCCeee
Q 023515 81 --GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (281)
Q Consensus 81 --~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (281)
++|+|||+||.... ...+.+++.+++|+.++..+++++.+. .+.+++|++||..++.+.+
T Consensus 82 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~~--------- 152 (253)
T PRK06172 82 YGRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGGGAIVNTASVAGLGAAP--------- 152 (253)
T ss_pred hCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECchhhccCCC---------
Confidence 56999999986321 123446678899999999888876643 1446899999987664211
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCC
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (281)
....|+.+|.+.+.+++.++.++ |++++++.||.+.++.................. ...
T Consensus 153 -------------~~~~Y~~sKaa~~~~~~~la~e~~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~-~~~---- 214 (253)
T PRK06172 153 -------------KMSIYAASKHAVIGLTKSAAIEYAKKGIRVNAVCPAVIDTDMFRRAYEADPRKAEFAAA-MHP---- 214 (253)
T ss_pred -------------CCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhcccChHHHHHHhc-cCC----
Confidence 12349999999999999998875 799999999999887643221111111111111 111
Q ss_pred CccceeHHHHHHHHHHhhcCCC--CCccEEEe
Q 023515 227 TFGWVNVKDVANAHIQAFEVPS--ANGRYCLV 256 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~ 256 (281)
...+..++|+++.+++++.+.. ..|.++..
T Consensus 215 ~~~~~~p~~ia~~~~~l~~~~~~~~~G~~i~~ 246 (253)
T PRK06172 215 VGRIGKVEEVASAVLYLCSDGASFTTGHALMV 246 (253)
T ss_pred CCCccCHHHHHHHHHHHhCccccCcCCcEEEE
Confidence 1235689999999999998643 35655444
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-24 Score=177.70 Aligned_cols=218 Identities=17% Similarity=0.151 Sum_probs=157.2
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
++++++++||||+|+||++++++|+++|++|++++|+.......... . ..++.++++|+++++++.++++
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~---~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 86 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVAEVAAQL---L--GGNAKGLVCDVSDSQSVEAAVAAVISA 86 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh---h--CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999976432211111 1 2356789999999988877665
Q ss_pred --CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 --~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|+|||+||.... ...+.+++.+++|+.++.++++++.+.+ +.++||++||..+..+.+
T Consensus 87 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~---------- 156 (255)
T PRK06841 87 FGRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLASQAGVVALE---------- 156 (255)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcchhhccCCC----------
Confidence 57999999986331 1223456789999999999999988642 457899999987655221
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
....|+.+|.+.+.+++.++.++ |++++.++||.+.++........ .......... ..
T Consensus 157 ------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~--~~~~~~~~~~-----~~ 217 (255)
T PRK06841 157 ------------RHVAYCASKAGVVGMTKVLALEWGPYGITVNAISPTVVLTELGKKAWAG--EKGERAKKLI-----PA 217 (255)
T ss_pred ------------CCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCcCcCcccccccch--hHHHHHHhcC-----CC
Confidence 12349999999999999988764 89999999999988753321111 1111111111 12
Q ss_pred ccceeHHHHHHHHHHhhcCCCC--CccEEEec
Q 023515 228 FGWVNVKDVANAHIQAFEVPSA--NGRYCLVE 257 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~~--~g~~~~~~ 257 (281)
..+.+++|+|+++++++..... .|..+..+
T Consensus 218 ~~~~~~~~va~~~~~l~~~~~~~~~G~~i~~d 249 (255)
T PRK06841 218 GRFAYPEEIAAAALFLASDAAAMITGENLVID 249 (255)
T ss_pred CCCcCHHHHHHHHHHHcCccccCccCCEEEEC
Confidence 3478999999999999986533 56554443
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-24 Score=178.63 Aligned_cols=221 Identities=17% Similarity=0.151 Sum_probs=154.6
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------C
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------G 81 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~ 81 (281)
+|+++||||+|+||+++++.|+++|++|++++|+.+....+....... ..++.++++|+++++.+.++++ +
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKD--GGKAIAVKADVSDRDQVFAAVRQVVDTFGD 79 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 679999999999999999999999999999999875544433322211 2467889999999988777665 5
Q ss_pred CcEeEEecccCCCC-----CCCccchhhhhHHHHHHHHHHHhhhCC----CccEEEEeccceeeecCCCCCCCCeeeecC
Q 023515 82 CDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKFP----SIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (281)
Q Consensus 82 ~d~Vih~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~ 152 (281)
+|+||||||..... ..+.++..+++|+.++..+++.+.+.+ ...++|++||..+.++.+
T Consensus 80 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~------------ 147 (256)
T PRK08643 80 LNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAGVVGNP------------ 147 (256)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECccccccCCC------------
Confidence 89999999863221 123456789999999999888887642 235899999987655221
Q ss_pred CCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCC-------ccHHH-HHHHHhCCC
Q 023515 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLN-------TSAAA-VLSLIKGAQ 221 (281)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~-------~~~~~-~~~~~~~~~ 221 (281)
....|+.+|.+.+.+++.++.+ .|+++++++||.+.+|....... ..... ...... ..
T Consensus 148 ----------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 216 (256)
T PRK08643 148 ----------ELAVYSSTKFAVRGLTQTAARDLASEGITVNAYAPGIVKTPMMFDIAHQVGENAGKPDEWGMEQFAK-DI 216 (256)
T ss_pred ----------CCchhHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcChhhhHHHhhhccccCCCchHHHHHHhc-cC
Confidence 1234999999999999998875 48999999999998875321000 00000 111111 10
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCCC--CCccEEEecC
Q 023515 222 TYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVER 258 (281)
Q Consensus 222 ~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~~ 258 (281)
+ ...+..++|+|.++.+++.... ..|..+..++
T Consensus 217 --~--~~~~~~~~~va~~~~~L~~~~~~~~~G~~i~vdg 251 (256)
T PRK08643 217 --T--LGRLSEPEDVANCVSFLAGPDSDYITGQTIIVDG 251 (256)
T ss_pred --C--CCCCcCHHHHHHHHHHHhCccccCccCcEEEeCC
Confidence 1 1235689999999999997543 3565544443
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.5e-24 Score=176.31 Aligned_cols=210 Identities=16% Similarity=0.136 Sum_probs=151.4
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCc-chhhhhhh-ccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP-KKTRHLLA-LDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
.+++|+++||||+|+||++++++|+++|++|++++|..... ........ ......++.++.+|+++++.+.++++
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 82 (249)
T PRK12827 3 SLDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGV 82 (249)
T ss_pred CcCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 35678999999999999999999999999999988753322 22221111 11112468899999999988887764
Q ss_pred ----CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhh-----hCCCccEEEEeccceeeecCCCCCCCC
Q 023515 81 ----GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCA-----KFPSIKRVVLTSSMAAVLNTGKPRTPD 146 (281)
Q Consensus 81 ----~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~-----~~~~~~~~v~~SS~~~~~~~~~~~~~~ 146 (281)
++|+|||+||.... ...+.++..+++|+.++.++++++. +. +.+++|++||..++++..
T Consensus 83 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~~iv~~sS~~~~~~~~------ 155 (249)
T PRK12827 83 EEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRAR-RGGRIVNIASVAGVRGNR------ 155 (249)
T ss_pred HHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-CCeEEEEECCchhcCCCC------
Confidence 58999999986431 1223456788999999999999998 33 557899999987765321
Q ss_pred eeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCC
Q 023515 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY 223 (281)
Q Consensus 147 ~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~ 223 (281)
....|+.+|.+.+.+++.++.+. +++++++|||.++++...... .. .......+
T Consensus 156 ----------------~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~~--~~---~~~~~~~~-- 212 (249)
T PRK12827 156 ----------------GQVNYAASKAGLIGLTKTLANELAPRGITVNAVAPGAINTPMADNAA--PT---EHLLNPVP-- 212 (249)
T ss_pred ----------------CCchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEEECCcCCCcccccc--hH---HHHHhhCC--
Confidence 12349999999999999888763 899999999999998643221 10 11222111
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCC
Q 023515 224 PNVTFGWVNVKDVANAHIQAFEVPS 248 (281)
Q Consensus 224 ~~~~~~~i~~~D~a~~i~~~~~~~~ 248 (281)
...+.+++|+|+++++++....
T Consensus 213 ---~~~~~~~~~va~~~~~l~~~~~ 234 (249)
T PRK12827 213 ---VQRLGEPDEVAALVAFLVSDAA 234 (249)
T ss_pred ---CcCCcCHHHHHHHHHHHcCccc
Confidence 1225589999999999997643
|
|
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.9e-24 Score=176.09 Aligned_cols=219 Identities=19% Similarity=0.151 Sum_probs=152.2
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC-CcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN-DPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------- 80 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------- 80 (281)
+++++||||+|+||++++++|+++|++|++..++.. ....+...... ...++.++++|++|.+++.++++
T Consensus 2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 79 (248)
T PRK06123 2 RKVMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRR--QGGEALAVAADVADEADVLRLFEAVDRELG 79 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHh--CCCcEEEEEeccCCHHHHHHHHHHHHHHhC
Confidence 568999999999999999999999999887765432 22221111111 12357889999999988887775
Q ss_pred CCcEeEEecccCCCC------CCCccchhhhhHHHHHHHHHHHhhhCCC------ccEEEEeccceeeecCCCCCCCCee
Q 023515 81 GCDGVCHTASPFYHD------AKDPQVELLDPAVKGTLNVLNSCAKFPS------IKRVVLTSSMAAVLNTGKPRTPDVV 148 (281)
Q Consensus 81 ~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~~~------~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (281)
++|+|||+|+..... ..+.++..+++|+.++.++++++.+.+. .+++|++||..+.++.+.
T Consensus 80 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~------- 152 (248)
T PRK06123 80 RLDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLGSPG------- 152 (248)
T ss_pred CCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcCCCCC-------
Confidence 679999999864321 2234557899999999999999886421 246999999877653210
Q ss_pred eecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCC
Q 023515 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (281)
Q Consensus 149 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (281)
....|+.+|.+.+.+++.++.+. |++++++||+.++||...... ............+
T Consensus 153 --------------~~~~Y~~sKaa~~~~~~~la~~~~~~~i~v~~i~pg~v~~~~~~~~~--~~~~~~~~~~~~p---- 212 (248)
T PRK06123 153 --------------EYIDYAASKGAIDTMTIGLAKEVAAEGIRVNAVRPGVIYTEIHASGG--EPGRVDRVKAGIP---- 212 (248)
T ss_pred --------------CccchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCchhhccC--CHHHHHHHHhcCC----
Confidence 01239999999999999998764 899999999999998643211 1222222222211
Q ss_pred CCccceeHHHHHHHHHHhhcCCC--CCc-cEEEec
Q 023515 226 VTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (281)
Q Consensus 226 ~~~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~ 257 (281)
...+.+++|+++++++++.... ..| .|++.+
T Consensus 213 -~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~g 246 (248)
T PRK06123 213 -MGRGGTAEEVARAILWLLSDEASYTTGTFIDVSG 246 (248)
T ss_pred -CCCCcCHHHHHHHHHHHhCccccCccCCEEeecC
Confidence 1123589999999999998643 234 555543
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-24 Score=190.26 Aligned_cols=233 Identities=16% Similarity=0.149 Sum_probs=159.2
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhc-----cC--CCCcEEEEEcCCCCcCcHHHHh
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLAL-----DG--ASERLQLFKANLLEEGSFDSIV 79 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-----~~--~~~~~~~~~~D~~~~~~~~~~~ 79 (281)
+++++||||||+|+||++++++|+++|++|++++|+.++...+...... .+ ...++.++++|++|.+++.+++
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL 157 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL 157 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence 4578999999999999999999999999999999987665443322111 00 0135889999999999999999
Q ss_pred cCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhh
Q 023515 80 DGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEV 159 (281)
Q Consensus 80 ~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~ 159 (281)
.++|+|||++|..... ...+...+++|+.|+.+++++|++. ++++||++||.++... + .. .. ...
T Consensus 158 ggiDiVVn~AG~~~~~-v~d~~~~~~VN~~Gt~nLl~Aa~~a-gVgRIV~VSSiga~~~-g---~p-----~~-~~~--- 222 (576)
T PLN03209 158 GNASVVICCIGASEKE-VFDVTGPYRIDYLATKNLVDAATVA-KVNHFILVTSLGTNKV-G---FP-----AA-ILN--- 222 (576)
T ss_pred cCCCEEEEcccccccc-ccchhhHHHHHHHHHHHHHHHHHHh-CCCEEEEEccchhccc-C---cc-----cc-chh---
Confidence 9999999999864321 1234567889999999999999997 8899999999865310 0 00 00 001
Q ss_pred hccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeHHHHHHH
Q 023515 160 CKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANA 239 (281)
Q Consensus 160 ~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~ 239 (281)
....|...|..+|..+. +.|+++++||||.++++....... ..+. ...+ +......+..+|+|++
T Consensus 223 ---sk~~~~~~KraaE~~L~----~sGIrvTIVRPG~L~tp~d~~~~t---~~v~-~~~~----d~~~gr~isreDVA~v 287 (576)
T PLN03209 223 ---LFWGVLCWKRKAEEALI----ASGLPYTIVRPGGMERPTDAYKET---HNLT-LSEE----DTLFGGQVSNLQVAEL 287 (576)
T ss_pred ---hHHHHHHHHHHHHHHHH----HcCCCEEEEECCeecCCccccccc---ccee-eccc----cccCCCccCHHHHHHH
Confidence 01237778888887774 469999999999999874321100 0000 0000 0111235899999999
Q ss_pred HHHhhcCCC-CCc-cEEEecCC----CCHHHHHHHH
Q 023515 240 HIQAFEVPS-ANG-RYCLVERV----SHYSEIVNII 269 (281)
Q Consensus 240 i~~~~~~~~-~~g-~~~~~~~~----~t~~e~~~~i 269 (281)
+++++.++. ..+ +|.+.++. ..+.++...+
T Consensus 288 VvfLasd~~as~~kvvevi~~~~~p~~~~~~~~~~i 323 (576)
T PLN03209 288 MACMAKNRRLSYCKVVEVIAETTAPLTPMEELLAKI 323 (576)
T ss_pred HHHHHcCchhccceEEEEEeCCCCCCCCHHHHHHhc
Confidence 999998664 334 66665432 4444444433
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-24 Score=179.14 Aligned_cols=228 Identities=14% Similarity=0.093 Sum_probs=159.8
Q ss_pred CcchhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc
Q 023515 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (281)
Q Consensus 1 ~~~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 80 (281)
|.++. +++|+++||||+|+||++++++|+++|++|++++|+.++...+.+..... ...++.++++|++|+++++++++
T Consensus 1 ~~~~~-l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~~~~~i~~~~~ 78 (263)
T PRK08339 1 MLKID-LSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSE-SNVDVSYIVADLTKREDLERTVK 78 (263)
T ss_pred CCccC-CCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhh-cCCceEEEEecCCCHHHHHHHHH
Confidence 44443 56899999999999999999999999999999999865544333222111 12468899999999988888775
Q ss_pred ------CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCC
Q 023515 81 ------GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPD 146 (281)
Q Consensus 81 ------~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~ 146 (281)
++|++|||||... +...+.|+..+++|+.++..+++++.+.+ +.+++|++||..+..+.+
T Consensus 79 ~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~g~Ii~isS~~~~~~~~------ 152 (263)
T PRK08339 79 ELKNIGEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFGRIIYSTSVAIKEPIP------ 152 (263)
T ss_pred HHHhhCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcCccccCCCC------
Confidence 5899999998632 22345577899999999999888887653 346899999986643111
Q ss_pred eeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCC-------C-ccHHHHHH
Q 023515 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTL-------N-TSAAAVLS 215 (281)
Q Consensus 147 ~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~-------~-~~~~~~~~ 215 (281)
....|+.+|.+.+.+++.++.++ |+++++|.||.+.++...... . ........
T Consensus 153 ----------------~~~~y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~ 216 (263)
T PRK08339 153 ----------------NIALSNVVRISMAGLVRTLAKELGPKGITVNGIMPGIIRTDRVIQLAQDRAKREGKSVEEALQE 216 (263)
T ss_pred ----------------cchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccHHHHHHHHhhhhccCCCHHHHHHH
Confidence 11349999999999999998864 799999999999876421100 0 00111111
Q ss_pred HHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCccEEEec
Q 023515 216 LIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVE 257 (281)
Q Consensus 216 ~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~ 257 (281)
... .. + ...+..++|+|+++.+++.... ..|.....+
T Consensus 217 ~~~-~~--p--~~r~~~p~dva~~v~fL~s~~~~~itG~~~~vd 255 (263)
T PRK08339 217 YAK-PI--P--LGRLGEPEEIGYLVAFLASDLGSYINGAMIPVD 255 (263)
T ss_pred Hhc-cC--C--cccCcCHHHHHHHHHHHhcchhcCccCceEEEC
Confidence 111 11 1 1236789999999999997543 356554443
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.1e-24 Score=176.40 Aligned_cols=203 Identities=14% Similarity=0.031 Sum_probs=150.7
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++|++|||||+|+||++++++|+++|++|++++|+.. .. ...++.++++|+++.+.+.++++
T Consensus 6 ~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~~-----~~------~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 74 (252)
T PRK08220 6 FSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAFL-----TQ------EDYPFATFVLDVSDAAAVAQVCQRLLAET 74 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecchh-----hh------cCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 56799999999999999999999999999999999761 00 12468889999999988888775
Q ss_pred -CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 -~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
++|+|||+|+.... ...+.++..+++|+.++.++++++.+.+ +.+++|++||..+..+..
T Consensus 75 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~ss~~~~~~~~----------- 143 (252)
T PRK08220 75 GPLDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIVTVGSNAAHVPRI----------- 143 (252)
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECCchhccCCC-----------
Confidence 47999999986332 1233466889999999999999987632 346899999976543110
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccH--H-----HHHHHHhCCC
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSA--A-----AVLSLIKGAQ 221 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~--~-----~~~~~~~~~~ 221 (281)
....|+.+|.+.+.+++.++.+ .|+++++++||.++++.......... . .......
T Consensus 144 -----------~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~--- 209 (252)
T PRK08220 144 -----------GMAAYGASKAALTSLAKCVGLELAPYGVRCNVVSPGSTDTDMQRTLWVDEDGEQQVIAGFPEQFKL--- 209 (252)
T ss_pred -----------CCchhHHHHHHHHHHHHHHHHHhhHhCeEEEEEecCcCcchhhhhhccchhhhhhhhhhHHHHHhh---
Confidence 1245999999999999999876 58999999999999986432111000 0 0011111
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCC
Q 023515 222 TYPNVTFGWVNVKDVANAHIQAFEVP 247 (281)
Q Consensus 222 ~~~~~~~~~i~~~D~a~~i~~~~~~~ 247 (281)
......+++++|+|+++++++...
T Consensus 210 --~~~~~~~~~~~dva~~~~~l~~~~ 233 (252)
T PRK08220 210 --GIPLGKIARPQEIANAVLFLASDL 233 (252)
T ss_pred --cCCCcccCCHHHHHHHHHHHhcch
Confidence 112345889999999999999754
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-24 Score=179.41 Aligned_cols=216 Identities=18% Similarity=0.172 Sum_probs=147.0
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--------
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------- 80 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------- 80 (281)
+++|+||||+|+||++++++|+++|++|++++|+++....+.. .+++++.+|++|.+++..+++
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~--------~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g 75 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEA--------EGLEAFQLDYAEPESIAALVAQVLELSGG 75 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH--------CCceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 6789999999999999999999999999999998755433221 247889999999988776654
Q ss_pred CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhh----hCCCccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCA----KFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 ~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
++|+||||||.... ...+.++..+++|+.|+.++++.+. +. +.++||++||..++.+.+
T Consensus 76 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~-~~g~iv~isS~~~~~~~~----------- 143 (277)
T PRK05993 76 RLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQ-GQGRIVQCSSILGLVPMK----------- 143 (277)
T ss_pred CccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhc-CCCEEEEECChhhcCCCC-----------
Confidence 47999999986322 1223456789999999665555544 44 567899999976643111
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCcc-----------HHHHHHHH
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTS-----------AAAVLSLI 217 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~-----------~~~~~~~~ 217 (281)
....|+.+|++.+.+++.++.+ .|+++++++||.+.++......... ...+....
T Consensus 144 -----------~~~~Y~asK~a~~~~~~~l~~el~~~gi~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (277)
T PRK05993 144 -----------YRGAYNASKFAIEGLSLTLRMELQGSGIHVSLIEPGPIETRFRANALAAFKRWIDIENSVHRAAYQQQM 212 (277)
T ss_pred -----------ccchHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCCccCchhhHHHHHHhhhhccccchhHHHHHHHH
Confidence 1245999999999999988754 5899999999999887532111000 00000000
Q ss_pred hCCCCCCCCCccceeHHHHHHHHHHhhcCCCCCccEEE
Q 023515 218 KGAQTYPNVTFGWVNVKDVANAHIQAFEVPSANGRYCL 255 (281)
Q Consensus 218 ~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~~~g~~~~ 255 (281)
.............+.++++|+.++.++.+++..-.|..
T Consensus 213 ~~~~~~~~~~~~~~~~~~va~~i~~a~~~~~~~~~~~~ 250 (277)
T PRK05993 213 ARLEGGGSKSRFKLGPEAVYAVLLHALTAPRPRPHYRV 250 (277)
T ss_pred HHHHhhhhccccCCCHHHHHHHHHHHHcCCCCCCeeee
Confidence 00000000111236899999999999997765434443
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-24 Score=174.87 Aligned_cols=204 Identities=14% Similarity=0.093 Sum_probs=152.6
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++++++||||+|+||++++++|+++|++|++++|+..+...+...... ...++.++++|+++++++.++++
T Consensus 4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (239)
T PRK07666 4 SLQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEA--YGVKVVIATADVSDYEEVTAAIEQLKNE 81 (239)
T ss_pred cCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH--hCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999986544333222211 12468899999999998888775
Q ss_pred --CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhC---CCccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 --~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|+|||+||.... ...+.+++.+++|+.++.++++++.+. .+.+++|++||...+++.+
T Consensus 82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~~~---------- 151 (239)
T PRK07666 82 LGSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTAGQKGAA---------- 151 (239)
T ss_pred cCCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchhhccCCC----------
Confidence 68999999986321 122345678999999999999998753 2457899999987665321
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
....|+.+|.+.+.+++.++++ .|++++++|||.+.++...... . .. ...
T Consensus 152 ------------~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~v~pg~v~t~~~~~~~---------~-~~-----~~~ 204 (239)
T PRK07666 152 ------------VTSAYSASKFGVLGLTESLMQEVRKHNIRVTALTPSTVATDMAVDLG---------L-TD-----GNP 204 (239)
T ss_pred ------------CCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccCcchhhcc---------c-cc-----cCC
Confidence 1234999999999999888765 4899999999999876422110 0 00 112
Q ss_pred ccceeHHHHHHHHHHhhcCCC
Q 023515 228 FGWVNVKDVANAHIQAFEVPS 248 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~ 248 (281)
..++.++|+|++++.+++++.
T Consensus 205 ~~~~~~~~~a~~~~~~l~~~~ 225 (239)
T PRK07666 205 DKVMQPEDLAEFIVAQLKLNK 225 (239)
T ss_pred CCCCCHHHHHHHHHHHHhCCC
Confidence 346789999999999998763
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-23 Score=173.68 Aligned_cols=228 Identities=21% Similarity=0.273 Sum_probs=154.9
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCc-CcHHHHh-cCCcEe
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEE-GSFDSIV-DGCDGV 85 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~-~~~d~V 85 (281)
.+|+|+||||||+||++++++|+++|++|+++.|+.++...... ...+++++++|+++. +.+.+.+ +++|+|
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~------~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~v 89 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLP------QDPSLQIVRADVTEGSDKLVEAIGDDSDAV 89 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcc------cCCceEEEEeeCCCCHHHHHHHhhcCCCEE
Confidence 57899999999999999999999999999999998754322110 013689999999984 5676777 689999
Q ss_pred EEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCc
Q 023515 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL 165 (281)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 165 (281)
||+++..... +.. ..+++|..++.++++++++. +.++||++||.+++. ... ..+..+.. .+. ....
T Consensus 90 i~~~g~~~~~--~~~-~~~~~n~~~~~~ll~a~~~~-~~~~iV~iSS~~v~g-~~~----~~~~~~~~--~~~---~~~~ 155 (251)
T PLN00141 90 ICATGFRRSF--DPF-APWKVDNFGTVNLVEACRKA-GVTRFILVSSILVNG-AAM----GQILNPAY--IFL---NLFG 155 (251)
T ss_pred EECCCCCcCC--CCC-CceeeehHHHHHHHHHHHHc-CCCEEEEEccccccC-CCc----ccccCcch--hHH---HHHH
Confidence 9998753211 121 34578999999999999987 788999999987653 110 00111100 000 0011
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhc
Q 023515 166 WYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFE 245 (281)
Q Consensus 166 ~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~ 245 (281)
.|..+|..+|++++ +.|++++++||+.++++...... . .... +.....+|+++|+|+++..++.
T Consensus 156 ~~~~~k~~~e~~l~----~~gi~~~iirpg~~~~~~~~~~~--~-------~~~~---~~~~~~~i~~~dvA~~~~~~~~ 219 (251)
T PLN00141 156 LTLVAKLQAEKYIR----KSGINYTIVRPGGLTNDPPTGNI--V-------MEPE---DTLYEGSISRDQVAEVAVEALL 219 (251)
T ss_pred HHHHHHHHHHHHHH----hcCCcEEEEECCCccCCCCCceE--E-------ECCC---CccccCcccHHHHHHHHHHHhc
Confidence 24556777777664 46899999999999976422110 0 0000 1112357999999999999998
Q ss_pred CCCCCc-cEEEec----CCCCHHHHHHHHHH
Q 023515 246 VPSANG-RYCLVE----RVSHYSEIVNIIRE 271 (281)
Q Consensus 246 ~~~~~g-~~~~~~----~~~t~~e~~~~i~~ 271 (281)
++...+ ++.+.+ ...++.+++..+++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (251)
T PLN00141 220 CPESSYKVVEIVARADAPKRSYKDLFASIKQ 250 (251)
T ss_pred ChhhcCcEEEEecCCCCCchhHHHHHHHhhc
Confidence 876544 565543 24788888887764
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=174.65 Aligned_cols=222 Identities=16% Similarity=0.143 Sum_probs=159.6
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++|+++||||+|+||++++++|+++|++|++++|+.+....+...... ...++.++++|+++++++.++++
T Consensus 8 ~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (256)
T PRK06124 8 SLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRA--AGGAAEALAFDIADEEAVAAAFARIDAE 85 (256)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHh--cCCceEEEEccCCCHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999999986543333222211 12468899999999988877765
Q ss_pred --CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 --GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 --~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|+|||+||... +...+.+++.+++|+.++.++++.+.+.+ +.+++|++||..+..+.+
T Consensus 86 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~---------- 155 (256)
T PRK06124 86 HGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIAGQVARA---------- 155 (256)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeechhccCCC----------
Confidence 5699999998632 12234466789999999999998887631 457899999986654211
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
....|+.+|.+.+.+++.++.+. ++++++++||.+.++....... .......... .. ..
T Consensus 156 ------------~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~-~~~~~~~~~~-~~----~~ 217 (256)
T PRK06124 156 ------------GDAVYPAAKQGLTGLMRALAAEFGPHGITSNAIAPGYFATETNAAMAA-DPAVGPWLAQ-RT----PL 217 (256)
T ss_pred ------------CccHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEECCccCcchhhhcc-ChHHHHHHHh-cC----CC
Confidence 12349999999999999887754 8999999999999886322111 1111111211 11 12
Q ss_pred ccceeHHHHHHHHHHhhcCCCC--CccEEEec
Q 023515 228 FGWVNVKDVANAHIQAFEVPSA--NGRYCLVE 257 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~~--~g~~~~~~ 257 (281)
..+++++|+++++++++..... .|.++..+
T Consensus 218 ~~~~~~~~~a~~~~~l~~~~~~~~~G~~i~~d 249 (256)
T PRK06124 218 GRWGRPEEIAGAAVFLASPAASYVNGHVLAVD 249 (256)
T ss_pred CCCCCHHHHHHHHHHHcCcccCCcCCCEEEEC
Confidence 3478999999999999987643 46665543
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.4e-24 Score=182.52 Aligned_cols=244 Identities=16% Similarity=0.134 Sum_probs=154.2
Q ss_pred hccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 5 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
+.+++++++||||+|+||++++++|+++|++|++++|+.++...+...... ...++.++++|++|.+++.++++
T Consensus 2 ~~~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 79 (322)
T PRK07453 2 SQDAKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGI--PPDSYTIIHIDLGDLDSVRRFVDDFRA 79 (322)
T ss_pred CCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhc--cCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 345689999999999999999999999999999999986554433222211 12468899999999988887765
Q ss_pred ---CCcEeEEecccCCC------CCCCccchhhhhHHHHHHHHHHHhhhCC---C--ccEEEEeccceeeecCCCCCC-C
Q 023515 81 ---GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFP---S--IKRVVLTSSMAAVLNTGKPRT-P 145 (281)
Q Consensus 81 ---~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~--~~~~v~~SS~~~~~~~~~~~~-~ 145 (281)
++|+||||||.... ...+.++..+++|+.|+.++++++.+.+ + .++||++||...++....... .
T Consensus 80 ~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~~~~~~~~~~~~~~ 159 (322)
T PRK07453 80 LGKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTVTANPKELGGKIPI 159 (322)
T ss_pred hCCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcccccCccccCCccCC
Confidence 48999999996321 1234567889999999999999998742 1 258999999766542110000 0
Q ss_pred CeeeecCCC-------CCh-----hhhccCCchhhhhHHHHHHHHHHHHHhc----CCcEEEEcCCcccCCCCCCCCCcc
Q 023515 146 DVVVDETWF-------SDP-----EVCKQSELWYPLSKTLAEDAAWKFAKEK----SIDLVTINPAMVIGPLLQPTLNTS 209 (281)
Q Consensus 146 ~~~~~e~~~-------~~~-----~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----g~~~~~irp~~v~g~~~~~~~~~~ 209 (281)
....+.++. ..| ..+..+...|+.||.+.+.+++.+++++ |+++++++||.|++..........
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~~~~~~~~~ 239 (322)
T PRK07453 160 PAPADLGDLSGFEAGFKAPISMADGKKFKPGKAYKDSKLCNMLTMRELHRRYHESTGITFSSLYPGCVADTPLFRNTPPL 239 (322)
T ss_pred CCccchhhhhcchhcccccccccCccCCCccchhhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCCcccccCCHH
Confidence 000000000 000 0011123569999999999888888764 799999999999854332211111
Q ss_pred HHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCccEEE
Q 023515 210 AAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCL 255 (281)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~ 255 (281)
...+...+... ....+...+..++.++.++..+. ..|.|+.
T Consensus 240 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~G~y~~ 282 (322)
T PRK07453 240 FQKLFPWFQKN-----ITGGYVSQELAGERVAQVVADPEFAQSGVHWS 282 (322)
T ss_pred HHHHHHHHHHH-----HhhceecHHHHhhHHHHhhcCcccCCCCceee
Confidence 11111111100 01124556666766766655432 3566654
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.3e-24 Score=176.65 Aligned_cols=222 Identities=17% Similarity=0.151 Sum_probs=156.6
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
++++|++|||||+|+||+++++.|+++|++|++++|+.++.+.+...... ...++.++++|++|++.+.++++
T Consensus 9 ~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~--~~~~~~~~~~Dl~d~~~i~~~~~~~~~~ 86 (259)
T PRK08213 9 DLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEA--LGIDALWIAADVADEADIERLAEETLER 86 (259)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999976544333322211 12467889999999988866554
Q ss_pred --CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhC----CCccEEEEeccceeeecCCCCCCCCeee
Q 023515 81 --GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKF----PSIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (281)
Q Consensus 81 --~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (281)
++|+|||+||... ....+.+++.+++|+.++.++++++.+. .+.++||++||..++++.+...
T Consensus 87 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~~~~~~~~~~~------ 160 (259)
T PRK08213 87 FGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASVAGLGGNPPEV------ 160 (259)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECChhhccCCCccc------
Confidence 5899999998522 1223345678899999999999988764 1456899999987665321100
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCC
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (281)
.....|+.+|++.+.+++.+++++ |+++++++|+.+.++..... ............ .
T Consensus 161 ------------~~~~~Y~~sKa~~~~~~~~~a~~~~~~gi~v~~v~Pg~~~t~~~~~~---~~~~~~~~~~~~-----~ 220 (259)
T PRK08213 161 ------------MDTIAYNTSKGAVINFTRALAAEWGPHGIRVNAIAPGFFPTKMTRGT---LERLGEDLLAHT-----P 220 (259)
T ss_pred ------------cCcchHHHHHHHHHHHHHHHHHHhcccCEEEEEEecCcCCCcchhhh---hHHHHHHHHhcC-----C
Confidence 012459999999999999998764 79999999999987653221 122222222222 1
Q ss_pred CccceeHHHHHHHHHHhhcCCCC--CccEEE
Q 023515 227 TFGWVNVKDVANAHIQAFEVPSA--NGRYCL 255 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~~--~g~~~~ 255 (281)
...+..++|++.++.+++..... .|..+.
T Consensus 221 ~~~~~~~~~va~~~~~l~~~~~~~~~G~~~~ 251 (259)
T PRK08213 221 LGRLGDDEDLKGAALLLASDASKHITGQILA 251 (259)
T ss_pred CCCCcCHHHHHHHHHHHhCccccCccCCEEE
Confidence 22356899999999999875432 454433
|
|
| >KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-24 Score=169.70 Aligned_cols=226 Identities=23% Similarity=0.262 Sum_probs=176.5
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 87 (281)
++..+.|.|||||+|++++.+|.+.|.+|++-.|..+.... ..+..++...+-+...|+.|+++++++++...+|||
T Consensus 60 sGiVaTVFGAtGFlGryvvnklak~GSQviiPyR~d~~~~r---~lkvmGdLGQvl~~~fd~~DedSIr~vvk~sNVVIN 136 (391)
T KOG2865|consen 60 SGIVATVFGATGFLGRYVVNKLAKMGSQVIIPYRGDEYDPR---HLKVMGDLGQVLFMKFDLRDEDSIRAVVKHSNVVIN 136 (391)
T ss_pred cceEEEEecccccccHHHHHHHhhcCCeEEEeccCCccchh---heeecccccceeeeccCCCCHHHHHHHHHhCcEEEE
Confidence 46678999999999999999999999999999996654322 222334446899999999999999999999999999
Q ss_pred ecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchh
Q 023515 88 TASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWY 167 (281)
Q Consensus 88 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y 167 (281)
+.|.-.+ ++++ .+.++|+.+..+|...|++. ++++||++|+..+-. . ..+-|
T Consensus 137 LIGrd~e--Tknf-~f~Dvn~~~aerlAricke~-GVerfIhvS~Lganv-----~-------------------s~Sr~ 188 (391)
T KOG2865|consen 137 LIGRDYE--TKNF-SFEDVNVHIAERLARICKEA-GVERFIHVSCLGANV-----K-------------------SPSRM 188 (391)
T ss_pred eeccccc--cCCc-ccccccchHHHHHHHHHHhh-Chhheeehhhccccc-----c-------------------ChHHH
Confidence 9986433 4444 77899999999999999998 999999999975321 0 01238
Q ss_pred hhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHh--CC-CCCC---CCCccceeHHHHHHHHH
Q 023515 168 PLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIK--GA-QTYP---NVTFGWVNVKDVANAHI 241 (281)
Q Consensus 168 ~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~--~~-~~~~---~~~~~~i~~~D~a~~i~ 241 (281)
=.+|.++|..++.. =-..+++||..+||..+. ....+...++ +. |.++ +....+||+-|+|.+|+
T Consensus 189 LrsK~~gE~aVrda----fPeAtIirPa~iyG~eDr-----fln~ya~~~rk~~~~pL~~~GekT~K~PVyV~DVaa~Iv 259 (391)
T KOG2865|consen 189 LRSKAAGEEAVRDA----FPEATIIRPADIYGTEDR-----FLNYYASFWRKFGFLPLIGKGEKTVKQPVYVVDVAAAIV 259 (391)
T ss_pred HHhhhhhHHHHHhh----CCcceeechhhhcccchh-----HHHHHHHHHHhcCceeeecCCcceeeccEEEehHHHHHH
Confidence 99999999999764 256899999999996532 2222222222 22 4443 35567999999999999
Q ss_pred HhhcCCCCCc-cEEEec-CCCCHHHHHHHHHHhC
Q 023515 242 QAFEVPSANG-RYCLVE-RVSHYSEIVNIIRELY 273 (281)
Q Consensus 242 ~~~~~~~~~g-~~~~~~-~~~t~~e~~~~i~~~~ 273 (281)
.++..+.+.| +|-++| ....+.|+++.+.+..
T Consensus 260 nAvkDp~s~Gktye~vGP~~yql~eLvd~my~~~ 293 (391)
T KOG2865|consen 260 NAVKDPDSMGKTYEFVGPDRYQLSELVDIMYDMA 293 (391)
T ss_pred HhccCccccCceeeecCCchhhHHHHHHHHHHHH
Confidence 9999998877 887776 7889999999887654
|
|
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=171.89 Aligned_cols=212 Identities=16% Similarity=0.197 Sum_probs=151.4
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCc-CcHHHHhcCCcEe
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEE-GSFDSIVDGCDGV 85 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~d~V 85 (281)
+++|+++||||+|+||+++++.|+++|++|++++|+..... ..++.++.+|++++ +.+.+.+.++|+|
T Consensus 3 l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~-----------~~~~~~~~~D~~~~~~~~~~~~~~id~l 71 (235)
T PRK06550 3 FMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKPDL-----------SGNFHFLQLDLSDDLEPLFDWVPSVDIL 71 (235)
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCccccc-----------CCcEEEEECChHHHHHHHHHhhCCCCEE
Confidence 56789999999999999999999999999999998754321 13578899999987 3333334478999
Q ss_pred EEecccCC------CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeecCCCCC
Q 023515 86 CHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSD 156 (281)
Q Consensus 86 ih~a~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~ 156 (281)
||+||... ....+.++..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 72 v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~---------------- 135 (235)
T PRK06550 72 CNTAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCSIASFVAGG---------------- 135 (235)
T ss_pred EECCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccCCC----------------
Confidence 99998532 11233466889999999999999998641 346899999987664211
Q ss_pred hhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeH
Q 023515 157 PEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNV 233 (281)
Q Consensus 157 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 233 (281)
....|+.+|.+.+.+++.++.++ |+++++++||.+.++....... ............ ....+..+
T Consensus 136 ------~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~pg~v~t~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~ 203 (235)
T PRK06550 136 ------GGAAYTASKHALAGFTKQLALDYAKDGIQVFGIAPGAVKTPMTAADFE-PGGLADWVARET-----PIKRWAEP 203 (235)
T ss_pred ------CCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCccCcccccccC-chHHHHHHhccC-----CcCCCCCH
Confidence 11349999999999999988765 8999999999998885432211 111112222211 12336789
Q ss_pred HHHHHHHHHhhcCCC--CCccEEEec
Q 023515 234 KDVANAHIQAFEVPS--ANGRYCLVE 257 (281)
Q Consensus 234 ~D~a~~i~~~~~~~~--~~g~~~~~~ 257 (281)
+|+|+++++++.+.. ..|.....+
T Consensus 204 ~~~a~~~~~l~s~~~~~~~g~~~~~~ 229 (235)
T PRK06550 204 EEVAELTLFLASGKADYMQGTIVPID 229 (235)
T ss_pred HHHHHHHHHHcChhhccCCCcEEEEC
Confidence 999999999997543 245444433
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=175.91 Aligned_cols=213 Identities=20% Similarity=0.190 Sum_probs=152.4
Q ss_pred CcchhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc
Q 023515 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (281)
Q Consensus 1 ~~~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 80 (281)
|.+++.+++|+++||||+|+||+++++.|+++|++|++++|+...... .++.++++|++|++++.++++
T Consensus 1 ~~~~~~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~~~-----------~~~~~~~~D~~~~~~~~~~~~ 69 (266)
T PRK06171 1 MQDWLNLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDGQH-----------ENYQFVPTDVSSAEEVNHTVA 69 (266)
T ss_pred CcccccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcccccc-----------CceEEEEccCCCHHHHHHHHH
Confidence 445556778999999999999999999999999999999987654321 357889999999988877665
Q ss_pred -------CCcEeEEecccCCC--------------CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceee
Q 023515 81 -------GCDGVCHTASPFYH--------------DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAV 136 (281)
Q Consensus 81 -------~~d~Vih~a~~~~~--------------~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~ 136 (281)
++|+|||+||.... ...+.|+..+++|+.++..+++++.+.+ +..++|++||..++
T Consensus 70 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~ 149 (266)
T PRK06171 70 EIIEKFGRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEAGL 149 (266)
T ss_pred HHHHHcCCCCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCcEEEEEcccccc
Confidence 57999999986321 1234456789999999999999998753 33579999998765
Q ss_pred ecCCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCccc-CCCCCCCCC-----
Q 023515 137 LNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVI-GPLLQPTLN----- 207 (281)
Q Consensus 137 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~-g~~~~~~~~----- 207 (281)
.+.+ ....|+.+|.+.+.+++.++.++ |+++++++||.+. ++.......
T Consensus 150 ~~~~----------------------~~~~Y~~sK~a~~~l~~~la~e~~~~gi~v~~v~pG~~~~t~~~~~~~~~~~~~ 207 (266)
T PRK06171 150 EGSE----------------------GQSCYAATKAALNSFTRSWAKELGKHNIRVVGVAPGILEATGLRTPEYEEALAY 207 (266)
T ss_pred CCCC----------------------CCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeccccccCCCcChhhhhhhcc
Confidence 4221 12359999999999999998764 8999999999985 332111100
Q ss_pred ---ccHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC
Q 023515 208 ---TSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS 248 (281)
Q Consensus 208 ---~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~ 248 (281)
.....+..........+ ...+..++|+|.++.+++....
T Consensus 208 ~~~~~~~~~~~~~~~~~~~p--~~r~~~~~eva~~~~fl~s~~~ 249 (266)
T PRK06171 208 TRGITVEQLRAGYTKTSTIP--LGRSGKLSEVADLVCYLLSDRA 249 (266)
T ss_pred ccCCCHHHHHhhhccccccc--CCCCCCHHHhhhheeeeecccc
Confidence 00011111111100111 2336789999999999998544
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=175.38 Aligned_cols=229 Identities=14% Similarity=0.054 Sum_probs=155.9
Q ss_pred hhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC-CcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--
Q 023515 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN-DPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-- 80 (281)
Q Consensus 4 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-- 80 (281)
|..+++|+++||||+++||++++++|+++|++|+++.|+.. ....+....... ...++.++++|++|+++++++++
T Consensus 3 ~~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~ 81 (260)
T PRK08416 3 SNEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQK-YGIKAKAYPLNILEPETYKELFKKI 81 (260)
T ss_pred ccccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHh-cCCceEEEEcCCCCHHHHHHHHHHH
Confidence 34567899999999999999999999999999988876532 222222221111 12468899999999988877765
Q ss_pred -----CCcEeEEecccCCC-----------CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCC
Q 023515 81 -----GCDGVCHTASPFYH-----------DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGK 141 (281)
Q Consensus 81 -----~~d~Vih~a~~~~~-----------~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~ 141 (281)
++|++|||||.... ...+.+...+++|+.+...+++.+.+.+ +.++||++||.....+.+
T Consensus 82 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~- 160 (260)
T PRK08416 82 DEDFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVGGGSIISLSSTGNLVYIE- 160 (260)
T ss_pred HHhcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccCCEEEEEEeccccccCCC-
Confidence 57999999975321 1123456788899999888888777643 346899999976543111
Q ss_pred CCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHh
Q 023515 142 PRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIK 218 (281)
Q Consensus 142 ~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~ 218 (281)
....|+.+|++.+.+++.++.++ |+++++|.||.+.++....... ..........
T Consensus 161 ---------------------~~~~Y~asK~a~~~~~~~la~el~~~gi~v~~v~PG~i~T~~~~~~~~-~~~~~~~~~~ 218 (260)
T PRK08416 161 ---------------------NYAGHGTSKAAVETMVKYAATELGEKNIRVNAVSGGPIDTDALKAFTN-YEEVKAKTEE 218 (260)
T ss_pred ---------------------CcccchhhHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccChhhhhccC-CHHHHHHHHh
Confidence 11349999999999999998875 8999999999998774221111 1111111222
Q ss_pred CCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCccEEEecCCCC
Q 023515 219 GAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVERVSH 261 (281)
Q Consensus 219 ~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~~~~t 261 (281)
..+ ...+..++|+|.++++++.... ..|.++..++..+
T Consensus 219 ~~~-----~~r~~~p~~va~~~~~l~~~~~~~~~G~~i~vdgg~~ 258 (260)
T PRK08416 219 LSP-----LNRMGQPEDLAGACLFLCSEKASWLTGQTIVVDGGTT 258 (260)
T ss_pred cCC-----CCCCCCHHHHHHHHHHHcChhhhcccCcEEEEcCCee
Confidence 111 1236789999999999997543 2465544443333
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7e-24 Score=174.03 Aligned_cols=210 Identities=20% Similarity=0.178 Sum_probs=153.0
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++|++|||||+|+||++++++|+++|++|++++|++.+......... ....+++.+|+.|.+++.++++
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVP----ADALRIGGIDLVDPQAARRAVDEVNRQ 79 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHh----hcCceEEEeecCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999999998754333211111 1246778899999988877765
Q ss_pred --CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhC---CCccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 --~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|+|||+|+.... ...+.+++.++.|+.++.++++++.+. .+.+++|++||..++.+.+
T Consensus 80 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~---------- 149 (239)
T PRK12828 80 FGRLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGAGAALKAGP---------- 149 (239)
T ss_pred hCCcCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECchHhccCCC----------
Confidence 58999999986321 112234567889999999999998653 2567999999987654211
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
....|+.+|.+.+.+++.++++ .+++++++|||.++++...... .....
T Consensus 150 ------------~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~i~pg~v~~~~~~~~~----------------~~~~~ 201 (239)
T PRK12828 150 ------------GMGAYAAAKAGVARLTEALAAELLDRGITVNAVLPSIIDTPPNRADM----------------PDADF 201 (239)
T ss_pred ------------CcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcchhhcC----------------Cchhh
Confidence 1234999999999999887764 4899999999999987422110 00112
Q ss_pred ccceeHHHHHHHHHHhhcCCCC--Ccc-EEEec
Q 023515 228 FGWVNVKDVANAHIQAFEVPSA--NGR-YCLVE 257 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~~--~g~-~~~~~ 257 (281)
..|++++|+|+++++++.+... .|. +.+.+
T Consensus 202 ~~~~~~~dva~~~~~~l~~~~~~~~g~~~~~~g 234 (239)
T PRK12828 202 SRWVTPEQIAAVIAFLLSDEAQAITGASIPVDG 234 (239)
T ss_pred hcCCCHHHHHHHHHHHhCcccccccceEEEecC
Confidence 3379999999999999986533 354 44444
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.5e-24 Score=172.60 Aligned_cols=208 Identities=16% Similarity=0.093 Sum_probs=148.3
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---CCcEe
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---GCDGV 85 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---~~d~V 85 (281)
||+++||||+|+||++++++|+++ ++|++++|+.++.+.+... ..+++++++|++|.+.+.++++ ++|+|
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~~id~v 75 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELAAE------LPGATPFPVDLTDPEAIAAAVEQLGRLDVL 75 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHHHH------hccceEEecCCCCHHHHHHHHHhcCCCCEE
Confidence 678999999999999999999999 9999999986543322211 1257889999999999988886 58999
Q ss_pred EEecccCCCC-----CCCccchhhhhHHHHHHHHHHHhhhCC--CccEEEEeccceeeecCCCCCCCCeeeecCCCCChh
Q 023515 86 CHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPE 158 (281)
Q Consensus 86 ih~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~ 158 (281)
||+||..... ..+.+.+.+++|+.+..++.+.+.+.+ ..+++|++||..++.+.+
T Consensus 76 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~~~~------------------ 137 (227)
T PRK08219 76 VHNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAAHGHVVFINSGAGLRANP------------------ 137 (227)
T ss_pred EECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEcchHhcCcCC------------------
Confidence 9999863321 123355678899999666666554321 246899999987654211
Q ss_pred hhccCCchhhhhHHHHHHHHHHHHHhc-C-CcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeHHHH
Q 023515 159 VCKQSELWYPLSKTLAEDAAWKFAKEK-S-IDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDV 236 (281)
Q Consensus 159 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~-g-~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~ 236 (281)
....|+.+|.+.+.+++.++.+. + +++.+++||.+.++.... +... .+. ......+++++|+
T Consensus 138 ----~~~~y~~~K~a~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~--------~~~~-~~~---~~~~~~~~~~~dv 201 (227)
T PRK08219 138 ----GWGSYAASKFALRALADALREEEPGNVRVTSVHPGRTDTDMQRG--------LVAQ-EGG---EYDPERYLRPETV 201 (227)
T ss_pred ----CCchHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCccchHhhh--------hhhh-hcc---ccCCCCCCCHHHH
Confidence 12349999999999998887653 4 899999999876653211 0000 111 1123458999999
Q ss_pred HHHHHHhhcCCCCCccEEEec
Q 023515 237 ANAHIQAFEVPSANGRYCLVE 257 (281)
Q Consensus 237 a~~i~~~~~~~~~~g~~~~~~ 257 (281)
|++++++++++..+.+|++.-
T Consensus 202 a~~~~~~l~~~~~~~~~~~~~ 222 (227)
T PRK08219 202 AKAVRFAVDAPPDAHITEVVV 222 (227)
T ss_pred HHHHHHHHcCCCCCccceEEE
Confidence 999999999876555676653
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.1e-24 Score=175.81 Aligned_cols=197 Identities=18% Similarity=0.106 Sum_probs=146.9
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------C
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------G 81 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~ 81 (281)
+|+|+||||+|+||++++++|+++|++|++++|+.++...+...... ..++.++++|++|++++.++++ .
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~ 78 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPK---AARVSVYAADVRDADALAAAAADFIAAHGL 78 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccc---CCeeEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 56899999999999999999999999999999986544332222111 1268899999999988877765 3
Q ss_pred CcEeEEecccCCCC------CCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeecC
Q 023515 82 CDGVCHTASPFYHD------AKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (281)
Q Consensus 82 ~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~ 152 (281)
+|++||+||..... ..+.++..+++|+.++.++++.+.+.+ +.++||++||..++.+.+
T Consensus 79 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~~~~iv~isS~~~~~~~~------------ 146 (257)
T PRK07024 79 PDVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAARRGTLVGIASVAGVRGLP------------ 146 (257)
T ss_pred CCEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcCCCEEEEEechhhcCCCC------------
Confidence 79999999863321 123466889999999999888655421 457899999987765321
Q ss_pred CCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCcc
Q 023515 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG 229 (281)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (281)
....|+.+|++.+.+++.++.+ .|+++++++||.+.++..... .. ....
T Consensus 147 ----------~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~-------------~~-----~~~~ 198 (257)
T PRK07024 147 ----------GAGAYSASKAAAIKYLESLRVELRPAGVRVVTIAPGYIRTPMTAHN-------------PY-----PMPF 198 (257)
T ss_pred ----------CCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCcCchhhcC-------------CC-----CCCC
Confidence 1134999999999999888754 489999999999988752210 00 0011
Q ss_pred ceeHHHHHHHHHHhhcCCC
Q 023515 230 WVNVKDVANAHIQAFEVPS 248 (281)
Q Consensus 230 ~i~~~D~a~~i~~~~~~~~ 248 (281)
++.++|+|+.++.++.+++
T Consensus 199 ~~~~~~~a~~~~~~l~~~~ 217 (257)
T PRK07024 199 LMDADRFAARAARAIARGR 217 (257)
T ss_pred ccCHHHHHHHHHHHHhCCC
Confidence 4689999999999998765
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-23 Score=172.49 Aligned_cols=218 Identities=17% Similarity=0.120 Sum_probs=153.2
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC-CcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN-DPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
+.++|++|||||+|+||++++++|+++|++|++++++.. ....+...... ...++.++++|++|.+++.++++
T Consensus 6 ~~~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 83 (258)
T PRK09134 6 MAAPRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRA--LGRRAVALQADLADEAEVRALVARASA 83 (258)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh--cCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 445789999999999999999999999999998877542 22222221111 12468889999999988887765
Q ss_pred ---CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeee
Q 023515 81 ---GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (281)
Q Consensus 81 ---~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (281)
++|+||||||.... ...+.++..+++|+.++.++++++.+.+ ..+++|+++|...+...+
T Consensus 84 ~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~~~~~~p--------- 154 (258)
T PRK09134 84 ALGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQRVWNLNP--------- 154 (258)
T ss_pred HcCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchhhcCCCC---------
Confidence 47999999986322 1223456889999999999999998753 235788888754432100
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc--CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCC
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK--SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
....|+.+|.+.|.+++.+++++ ++++++++||.+.++... ....+.......+ .
T Consensus 155 -------------~~~~Y~~sK~a~~~~~~~la~~~~~~i~v~~i~PG~v~t~~~~-----~~~~~~~~~~~~~-----~ 211 (258)
T PRK09134 155 -------------DFLSYTLSKAALWTATRTLAQALAPRIRVNAIGPGPTLPSGRQ-----SPEDFARQHAATP-----L 211 (258)
T ss_pred -------------CchHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecccccCCccc-----ChHHHHHHHhcCC-----C
Confidence 12359999999999999998765 489999999998765321 1122222222211 1
Q ss_pred ccceeHHHHHHHHHHhhcCCCCCc-cEEEec
Q 023515 228 FGWVNVKDVANAHIQAFEVPSANG-RYCLVE 257 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~~~g-~~~~~~ 257 (281)
....+++|+|++++++++.+...| .|++.+
T Consensus 212 ~~~~~~~d~a~~~~~~~~~~~~~g~~~~i~g 242 (258)
T PRK09134 212 GRGSTPEEIAAAVRYLLDAPSVTGQMIAVDG 242 (258)
T ss_pred CCCcCHHHHHHHHHHHhcCCCcCCCEEEECC
Confidence 124789999999999999776666 455544
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-23 Score=172.54 Aligned_cols=218 Identities=15% Similarity=0.103 Sum_probs=154.8
Q ss_pred cCCCeEEEeCCc--hHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 7 AAGKVVCVTGAS--GYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 7 ~~~~~ilItGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
+++|+++||||+ ++||++++++|+++|++|++.+|+....+.+.+ .. ...+.++++|++|+++++++++
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~---~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~ 79 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQK---LV--DEEDLLVECDVASDESIERAFATIKE 79 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHh---hc--cCceeEEeCCCCCHHHHHHHHHHHHH
Confidence 568999999999 799999999999999999999887321111111 11 1357889999999988877654
Q ss_pred ---CCcEeEEecccCC---------CCCCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCCCCCe
Q 023515 81 ---GCDGVCHTASPFY---------HDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDV 147 (281)
Q Consensus 81 ---~~d~Vih~a~~~~---------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (281)
++|++|||||... +...+.|+..+++|+.++..+++++.+.+ +.+++|++||..+..+.+
T Consensus 80 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~~~~------- 152 (252)
T PRK06079 80 RVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTYFGSERAIP------- 152 (252)
T ss_pred HhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEeccCccccCC-------
Confidence 5899999998632 12234577889999999999999998864 235899999976543110
Q ss_pred eeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCC
Q 023515 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP 224 (281)
Q Consensus 148 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (281)
....|+.+|++.+.+++.++.++ |+++++|.||.|.++....... ............|
T Consensus 153 ---------------~~~~Y~asKaal~~l~~~la~el~~~gI~vn~i~PG~v~T~~~~~~~~-~~~~~~~~~~~~p--- 213 (252)
T PRK06079 153 ---------------NYNVMGIAKAALESSVRYLARDLGKKGIRVNAISAGAVKTLAVTGIKG-HKDLLKESDSRTV--- 213 (252)
T ss_pred ---------------cchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccccccccCCC-hHHHHHHHHhcCc---
Confidence 12349999999999999998864 8999999999998875322111 1122222222111
Q ss_pred CCCccceeHHHHHHHHHHhhcCCC--CCccEEEec
Q 023515 225 NVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVE 257 (281)
Q Consensus 225 ~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~ 257 (281)
...+..++|+|+++.+++.... ..|..+..+
T Consensus 214 --~~r~~~pedva~~~~~l~s~~~~~itG~~i~vd 246 (252)
T PRK06079 214 --DGVGVTIEEVGNTAAFLLSDLSTGVTGDIIYVD 246 (252)
T ss_pred --ccCCCCHHHHHHHHHHHhCcccccccccEEEeC
Confidence 1237789999999999997643 356544443
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.1e-24 Score=181.89 Aligned_cols=209 Identities=15% Similarity=0.085 Sum_probs=152.2
Q ss_pred hccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 5 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
..+++++|+||||+|+||++++++|+++|++|++++|+.++.+.+.+..... ..++.++++|++|.++++++++
T Consensus 4 ~~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~--g~~~~~v~~Dv~d~~~v~~~~~~~~~ 81 (334)
T PRK07109 4 KPIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAA--GGEALAVVADVADAEAVQAAADRAEE 81 (334)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHc--CCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 3466889999999999999999999999999999999865444333322211 2468899999999998887764
Q ss_pred ---CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeee
Q 023515 81 ---GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (281)
Q Consensus 81 ---~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (281)
++|++|||||... ....+.++..+++|+.++.++++.+.+.+ +.++||++||..++.+.+
T Consensus 82 ~~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~g~iV~isS~~~~~~~~--------- 152 (334)
T PRK07109 82 ELGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRGAIIQVGSALAYRSIP--------- 152 (334)
T ss_pred HCCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEeCChhhccCCC---------
Confidence 6899999998522 22234466889999999988887777642 347899999987764211
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc-----CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCC
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK-----SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP 224 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (281)
....|+.+|++.+.+++.++.+. ++++++++||.+.+|.... ........ .
T Consensus 153 -------------~~~~Y~asK~a~~~~~~~l~~el~~~~~~I~v~~v~Pg~v~T~~~~~--------~~~~~~~~---~ 208 (334)
T PRK07109 153 -------------LQSAYCAAKHAIRGFTDSLRCELLHDGSPVSVTMVQPPAVNTPQFDW--------ARSRLPVE---P 208 (334)
T ss_pred -------------cchHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCccCchhhh--------hhhhcccc---c
Confidence 12459999999999998887653 6999999999998775221 01111110 1
Q ss_pred CCCccceeHHHHHHHHHHhhcCCC
Q 023515 225 NVTFGWVNVKDVANAHIQAFEVPS 248 (281)
Q Consensus 225 ~~~~~~i~~~D~a~~i~~~~~~~~ 248 (281)
.....+..++|+|++++++++++.
T Consensus 209 ~~~~~~~~pe~vA~~i~~~~~~~~ 232 (334)
T PRK07109 209 QPVPPIYQPEVVADAILYAAEHPR 232 (334)
T ss_pred cCCCCCCCHHHHHHHHHHHHhCCC
Confidence 112246789999999999998763
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-23 Score=173.58 Aligned_cols=219 Identities=17% Similarity=0.148 Sum_probs=156.5
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++|+++||||+|+||++++++|+++|++|++++|+.++.+........ ...++.++++|+++.+++.++++
T Consensus 8 ~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 85 (265)
T PRK07097 8 LKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRE--LGIEAHGYVCDVTDEDGVQAMVSQIEKEV 85 (265)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh--cCCceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 5689999999999999999999999999999998876544333222211 12468899999999988888775
Q ss_pred -CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 -GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 -~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
++|+|||+||... ....+.++..+++|+.++..+++.+.+.+ +.++||++||..+.++.+
T Consensus 86 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~----------- 154 (265)
T PRK07097 86 GVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSMMSELGRE----------- 154 (265)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCcEEEEEcCccccCCCC-----------
Confidence 4899999999633 22334566888999999999999887642 457899999976654211
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCC----ccHHHHHHHHhCCCCCC
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLN----TSAAAVLSLIKGAQTYP 224 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~----~~~~~~~~~~~~~~~~~ 224 (281)
....|+.+|.+.+.+++.+++++ |++++.|+||.+.++...+... .....+........ +
T Consensus 155 -----------~~~~Y~~sKaal~~l~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 221 (265)
T PRK07097 155 -----------TVSAYAAAKGGLKMLTKNIASEYGEANIQCNGIGPGYIATPQTAPLRELQADGSRHPFDQFIIAKT--P 221 (265)
T ss_pred -----------CCccHHHHHHHHHHHHHHHHHHhhhcCceEEEEEeccccccchhhhhhccccccchhHHHHHHhcC--C
Confidence 12349999999999999998875 8999999999999885432110 00011111111110 1
Q ss_pred CCCccceeHHHHHHHHHHhhcCCC--CCccE
Q 023515 225 NVTFGWVNVKDVANAHIQAFEVPS--ANGRY 253 (281)
Q Consensus 225 ~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~ 253 (281)
...+..++|+|.++++++.... ..|..
T Consensus 222 --~~~~~~~~dva~~~~~l~~~~~~~~~g~~ 250 (265)
T PRK07097 222 --AARWGDPEDLAGPAVFLASDASNFVNGHI 250 (265)
T ss_pred --ccCCcCHHHHHHHHHHHhCcccCCCCCCE
Confidence 1236789999999999998643 24544
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-23 Score=172.98 Aligned_cols=211 Identities=14% Similarity=0.095 Sum_probs=152.3
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++++++||||+|+||++++++|+++|++|++++|+.++.+.+....... ..++.++.+|+++++.+.++++
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAA--GRRAHVVAADLAHPEATAGLAGQAVEAF 85 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 56899999999999999999999999999999999865443333222111 2468889999999988877665
Q ss_pred -CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhC----CCccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 -GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKF----PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 -~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|+|||+||... ....+.++..+++|+.++.++++++.+. .+.+++|++||..+..+.+
T Consensus 86 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~---------- 155 (263)
T PRK07814 86 GRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISSTMGRLAGR---------- 155 (263)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEccccccCCCC----------
Confidence 6899999998522 1223446688999999999999999863 1457899999976654211
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc--CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCc
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK--SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (281)
....|+.+|.+.+.+++.++.+. +++++.++||.+.++..... ... ..+.....+.. ...
T Consensus 156 ------------~~~~Y~~sK~a~~~~~~~~~~e~~~~i~v~~i~Pg~v~t~~~~~~-~~~-~~~~~~~~~~~----~~~ 217 (263)
T PRK07814 156 ------------GFAAYGTAKAALAHYTRLAALDLCPRIRVNAIAPGSILTSALEVV-AAN-DELRAPMEKAT----PLR 217 (263)
T ss_pred ------------CCchhHHHHHHHHHHHHHHHHHHCCCceEEEEEeCCCcCchhhhc-cCC-HHHHHHHHhcC----CCC
Confidence 12459999999999999998864 57899999999987643211 001 11222222211 112
Q ss_pred cceeHHHHHHHHHHhhcCC
Q 023515 229 GWVNVKDVANAHIQAFEVP 247 (281)
Q Consensus 229 ~~i~~~D~a~~i~~~~~~~ 247 (281)
.+..++|+|+++++++.+.
T Consensus 218 ~~~~~~~va~~~~~l~~~~ 236 (263)
T PRK07814 218 RLGDPEDIAAAAVYLASPA 236 (263)
T ss_pred CCcCHHHHHHHHHHHcCcc
Confidence 3568999999999999764
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.1e-23 Score=171.57 Aligned_cols=215 Identities=17% Similarity=0.143 Sum_probs=155.7
Q ss_pred hccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 5 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
..+++|+++||||+|+||+++++.|+++|++|++++|+.+..+.+...........++.++++|+++.+++..+++
T Consensus 5 ~~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (257)
T PRK09242 5 WRLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVED 84 (257)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 3467899999999999999999999999999999999865544333222211112468899999999887766654
Q ss_pred ---CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeee
Q 023515 81 ---GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (281)
Q Consensus 81 ---~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (281)
++|+|||+||... ....+.++..+++|+.++.++++++.+.+ +.+++|++||..++.+.+
T Consensus 85 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~~~~--------- 155 (257)
T PRK09242 85 HWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSVSGLTHVR--------- 155 (257)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECccccCCCCC---------
Confidence 6799999998621 22344567889999999999999987532 457899999986654211
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCC
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (281)
....|+.+|.+.+.+++.++.++ |++++.++||.+.++....... ............ .
T Consensus 156 -------------~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~i~t~~~~~~~~-~~~~~~~~~~~~-----~ 216 (257)
T PRK09242 156 -------------SGAPYGMTKAALLQMTRNLAVEWAEDGIRVNAVAPWYIRTPLTSGPLS-DPDYYEQVIERT-----P 216 (257)
T ss_pred -------------CCcchHHHHHHHHHHHHHHHHHHHHhCeEEEEEEECCCCCcccccccC-ChHHHHHHHhcC-----C
Confidence 12459999999999999887654 8999999999999886432211 122222222211 1
Q ss_pred CccceeHHHHHHHHHHhhcCC
Q 023515 227 TFGWVNVKDVANAHIQAFEVP 247 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~ 247 (281)
...+..++|++.++.+++...
T Consensus 217 ~~~~~~~~~va~~~~~l~~~~ 237 (257)
T PRK09242 217 MRRVGEPEEVAAAVAFLCMPA 237 (257)
T ss_pred CCCCcCHHHHHHHHHHHhCcc
Confidence 122558999999999999754
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=174.82 Aligned_cols=211 Identities=18% Similarity=0.147 Sum_probs=152.0
Q ss_pred hccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 5 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
+++++|+++||||+|+||++++++|+++|++|++++|+.++.+.+.... ..++.++++|++|.++++.+++
T Consensus 2 ~~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (263)
T PRK06200 2 GWLHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRF-----GDHVLVVEGDVTSYADNQRAVDQTVD 76 (263)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCcceEEEccCCCHHHHHHHHHHHHH
Confidence 3466899999999999999999999999999999999865544332221 1357889999999988777664
Q ss_pred ---CCcEeEEecccCCC------CCCC----ccchhhhhHHHHHHHHHHHhhhCC--CccEEEEeccceeeecCCCCCCC
Q 023515 81 ---GCDGVCHTASPFYH------DAKD----PQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTP 145 (281)
Q Consensus 81 ---~~d~Vih~a~~~~~------~~~~----~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~ 145 (281)
++|++||+||.... ...+ .|++.+++|+.++..+++++.+.+ ..+++|++||..++.+.+
T Consensus 77 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~----- 151 (263)
T PRK06200 77 AFGKLDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASGGSMIFTLSNSSFYPGG----- 151 (263)
T ss_pred hcCCCCEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcCCEEEEECChhhcCCCC-----
Confidence 68999999996321 1111 156778999999999999998753 235799999987764211
Q ss_pred CeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc--CCcEEEEcCCcccCCCCCCCC--------CccHHHHHH
Q 023515 146 DVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK--SIDLVTINPAMVIGPLLQPTL--------NTSAAAVLS 215 (281)
Q Consensus 146 ~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--g~~~~~irp~~v~g~~~~~~~--------~~~~~~~~~ 215 (281)
....|+.+|.+.+.+++.++.++ ++++++|.||.+.++...... ...... ..
T Consensus 152 -----------------~~~~Y~~sK~a~~~~~~~la~el~~~Irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~-~~ 213 (263)
T PRK06200 152 -----------------GGPLYTASKHAVVGLVRQLAYELAPKIRVNGVAPGGTVTDLRGPASLGQGETSISDSPGL-AD 213 (263)
T ss_pred -----------------CCchhHHHHHHHHHHHHHHHHHHhcCcEEEEEeCCccccCCcCccccCCCCcccccccch-hH
Confidence 11349999999999999998875 589999999999887532110 000111 11
Q ss_pred HHhCCCCCCCCCccceeHHHHHHHHHHhhcCC
Q 023515 216 LIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP 247 (281)
Q Consensus 216 ~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~ 247 (281)
..... .+ ...+..++|+|.++++++...
T Consensus 214 ~~~~~--~p--~~r~~~~~eva~~~~fl~s~~ 241 (263)
T PRK06200 214 MIAAI--TP--LQFAPQPEDHTGPYVLLASRR 241 (263)
T ss_pred HhhcC--CC--CCCCCCHHHHhhhhhheeccc
Confidence 11111 11 224678999999999999755
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=172.40 Aligned_cols=215 Identities=14% Similarity=0.113 Sum_probs=150.1
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---CC
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---GC 82 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---~~ 82 (281)
.+++|+|+||||+|+||++++++|+++|++|+++.|+..+ ..+.+... .++.++.+|++|.+.+.++++ ++
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~--~~~~l~~~----~~~~~~~~D~~~~~~~~~~~~~~~~i 76 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKD--AAERLAQE----TGATAVQTDSADRDAVIDVVRKSGAL 76 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHH--HHHHHHHH----hCCeEEecCCCCHHHHHHHHHHhCCC
Confidence 4568999999999999999999999999999888764321 11111111 135678899999887777665 58
Q ss_pred cEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCCCCCeeeecCCCCC
Q 023515 83 DGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSD 156 (281)
Q Consensus 83 d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~ 156 (281)
|++||+||.... ...+.++..+++|+.++.+++..+.+.+ +.+++|++||..+.... .
T Consensus 77 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~---~------------- 140 (237)
T PRK12742 77 DILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGDRMP---V------------- 140 (237)
T ss_pred cEEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEeccccccCC---C-------------
Confidence 999999986321 1234567899999999999988887753 34689999997542100 0
Q ss_pred hhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeH
Q 023515 157 PEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNV 233 (281)
Q Consensus 157 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 233 (281)
.....|+.+|++.+.+++.++.++ |+++++++||.+.++..... . . ..+...... + ...+..+
T Consensus 141 -----~~~~~Y~~sKaa~~~~~~~la~~~~~~gi~v~~v~Pg~~~t~~~~~~-~---~-~~~~~~~~~--~--~~~~~~p 206 (237)
T PRK12742 141 -----AGMAAYAASKSALQGMARGLARDFGPRGITINVVQPGPIDTDANPAN-G---P-MKDMMHSFM--A--IKRHGRP 206 (237)
T ss_pred -----CCCcchHHhHHHHHHHHHHHHHHHhhhCeEEEEEecCcccCCccccc-c---H-HHHHHHhcC--C--CCCCCCH
Confidence 012459999999999999888754 79999999999988753221 1 1 111111111 1 1235799
Q ss_pred HHHHHHHHHhhcCCCC--CccEEEe
Q 023515 234 KDVANAHIQAFEVPSA--NGRYCLV 256 (281)
Q Consensus 234 ~D~a~~i~~~~~~~~~--~g~~~~~ 256 (281)
+|+++++.+++..... .|..+..
T Consensus 207 ~~~a~~~~~l~s~~~~~~~G~~~~~ 231 (237)
T PRK12742 207 EEVAGMVAWLAGPEASFVTGAMHTI 231 (237)
T ss_pred HHHHHHHHHHcCcccCcccCCEEEe
Confidence 9999999999976433 4544443
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.8e-23 Score=170.95 Aligned_cols=221 Identities=15% Similarity=0.108 Sum_probs=157.7
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++|+|+||||+|+||++++++|+++|++|++++|+.+....+....... ..++.++.+|+++.+++.++++
T Consensus 8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~i~~~~~~~~~~ 85 (255)
T PRK06113 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL--GGQAFACRCDITSEQELSALADFALSK 85 (255)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999998765544433322221 2467889999999988877654
Q ss_pred --CCcEeEEecccCCC----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 --GCDGVCHTASPFYH----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 --~~d~Vih~a~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
++|++||+||.... ...+.++..+++|+.++.++++++.+.+ +.+++|++||..+..+..
T Consensus 86 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~----------- 154 (255)
T PRK06113 86 LGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNI----------- 154 (255)
T ss_pred cCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEecccccCCCC-----------
Confidence 57999999986322 1224455778999999999999998542 345899999976543211
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCc
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (281)
....|+.+|++.+.+++.++.+ .|++++++.||.+.++...... ......+..... ...
T Consensus 155 -----------~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~t~~~~~~~--~~~~~~~~~~~~-----~~~ 216 (255)
T PRK06113 155 -----------NMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVI--TPEIEQKMLQHT-----PIR 216 (255)
T ss_pred -----------CcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeccccccccccccc--CHHHHHHHHhcC-----CCC
Confidence 1234999999999999998875 3799999999999887533211 112222222211 123
Q ss_pred cceeHHHHHHHHHHhhcCCCC--Cc-cEEEec
Q 023515 229 GWVNVKDVANAHIQAFEVPSA--NG-RYCLVE 257 (281)
Q Consensus 229 ~~i~~~D~a~~i~~~~~~~~~--~g-~~~~~~ 257 (281)
.+..++|+++++++++..... .| .+++.+
T Consensus 217 ~~~~~~d~a~~~~~l~~~~~~~~~G~~i~~~g 248 (255)
T PRK06113 217 RLGQPQDIANAALFLCSPAASWVSGQILTVSG 248 (255)
T ss_pred CCcCHHHHHHHHHHHcCccccCccCCEEEECC
Confidence 367999999999999975432 45 444444
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-23 Score=175.67 Aligned_cols=206 Identities=17% Similarity=0.182 Sum_probs=150.2
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------C
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------G 81 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~ 81 (281)
+++||||||+|+||++++++|+++|++|++++|+..+.+.+.+.... ...++.++.+|++|.+.+..+++ +
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 78 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELAD--HGGEALVVPTDVSDAEACERLIEAAVARFGG 78 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 46899999999999999999999999999999986544333222211 12468889999999988887765 6
Q ss_pred CcEeEEecccCCCC------CCCccchhhhhHHHHHHHHHHHhhhCC--CccEEEEeccceeeecCCCCCCCCeeeecCC
Q 023515 82 CDGVCHTASPFYHD------AKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (281)
Q Consensus 82 ~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~ 153 (281)
+|+|||+||..... ..+.++..+++|+.++.++++.+.+.+ +.+++|++||..++.+.+
T Consensus 79 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~~~~~~~------------- 145 (263)
T PRK06181 79 IDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLAGLTGVP------------- 145 (263)
T ss_pred CCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecccccCCCC-------------
Confidence 89999999863321 122245679999999999999997532 346899999987764221
Q ss_pred CCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCC--CCCCCCc
Q 023515 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--TYPNVTF 228 (281)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 228 (281)
....|+.+|.+.+.+++.++.+ .++++++++||.+.++........ .+.+ ..+.+..
T Consensus 146 ---------~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~~~~---------~~~~~~~~~~~~~ 207 (263)
T PRK06181 146 ---------TRSGYAASKHALHGFFDSLRIELADDGVAVTVVCPGFVATDIRKRALDG---------DGKPLGKSPMQES 207 (263)
T ss_pred ---------CccHHHHHHHHHHHHHHHHHHHhhhcCceEEEEecCccccCcchhhccc---------ccccccccccccc
Confidence 1235999999999999887654 489999999999987653211100 0110 1122234
Q ss_pred cceeHHHHHHHHHHhhcCC
Q 023515 229 GWVNVKDVANAHIQAFEVP 247 (281)
Q Consensus 229 ~~i~~~D~a~~i~~~~~~~ 247 (281)
++++++|+|++++.+++..
T Consensus 208 ~~~~~~dva~~i~~~~~~~ 226 (263)
T PRK06181 208 KIMSAEECAEAILPAIARR 226 (263)
T ss_pred CCCCHHHHHHHHHHHhhCC
Confidence 7899999999999999854
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-23 Score=177.49 Aligned_cols=217 Identities=19% Similarity=0.142 Sum_probs=156.2
Q ss_pred chhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--
Q 023515 3 SVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-- 80 (281)
Q Consensus 3 ~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-- 80 (281)
++..+++++++||||+|+||+++++.|+++|++|++++|+.++.+.+..... ....+..+++|++|.+++.++++
T Consensus 3 ~~~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~---~~~~~~~~~~Dv~d~~~v~~~~~~~ 79 (296)
T PRK05872 3 PMTSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELG---GDDRVLTVVADVTDLAAMQAAAEEA 79 (296)
T ss_pred CCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc---CCCcEEEEEecCCCHHHHHHHHHHH
Confidence 3455678999999999999999999999999999999998655443332221 12356677899999988877664
Q ss_pred -----CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC--CccEEEEeccceeeecCCCCCCCCee
Q 023515 81 -----GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVV 148 (281)
Q Consensus 81 -----~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (281)
++|+||||||... ....+.+++.+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 80 ~~~~g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~-------- 151 (296)
T PRK05872 80 VERFGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSSLAAFAAAP-------- 151 (296)
T ss_pred HHHcCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHhhcCCCC--------
Confidence 5899999999632 22234466889999999999999998742 236899999987764211
Q ss_pred eecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCC
Q 023515 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (281)
Q Consensus 149 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (281)
....|+.+|.+.+.+++.++.+ .|++++++.||.+.++........ ...........+ .
T Consensus 152 --------------~~~~Y~asKaal~~~~~~l~~e~~~~gi~v~~v~Pg~v~T~~~~~~~~~-~~~~~~~~~~~~---~ 213 (296)
T PRK05872 152 --------------GMAAYCASKAGVEAFANALRLEVAHHGVTVGSAYLSWIDTDLVRDADAD-LPAFRELRARLP---W 213 (296)
T ss_pred --------------CchHHHHHHHHHHHHHHHHHHHHHHHCcEEEEEecCcccchhhhhcccc-chhHHHHHhhCC---C
Confidence 1234999999999999988764 489999999999988753321111 011222221111 1
Q ss_pred CCccceeHHHHHHHHHHhhcCCC
Q 023515 226 VTFGWVNVKDVANAHIQAFEVPS 248 (281)
Q Consensus 226 ~~~~~i~~~D~a~~i~~~~~~~~ 248 (281)
....++.++|+|++++.++.+..
T Consensus 214 p~~~~~~~~~va~~i~~~~~~~~ 236 (296)
T PRK05872 214 PLRRTTSVEKCAAAFVDGIERRA 236 (296)
T ss_pred cccCCCCHHHHHHHHHHHHhcCC
Confidence 12246789999999999998654
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-23 Score=175.80 Aligned_cols=198 Identities=22% Similarity=0.153 Sum_probs=148.4
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++++|+||||||+||++++++|+++|++|++++|++++...+.... .++.++.+|++|++++.++++
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~~~~ 76 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAEL------GLVVGGPLDVTDPASFAAFLDAVEADL 76 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh------ccceEEEccCCCHHHHHHHHHHHHHHc
Confidence 45789999999999999999999999999999998765443322211 147889999999988766654
Q ss_pred -CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 -~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
++|++|||||.... ...+.++..+++|+.++.++++.+.+.+ +.++||++||..++.+.+
T Consensus 77 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~----------- 145 (273)
T PRK07825 77 GPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGRGHVVNVASLAGKIPVP----------- 145 (273)
T ss_pred CCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCccccCCCC-----------
Confidence 57999999986321 1223456789999999999998887642 456899999987654211
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCc
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (281)
....|+.+|.+.+.+.+.++.+ .|+++++++|+.+.++..... . +....
T Consensus 146 -----------~~~~Y~asKaa~~~~~~~l~~el~~~gi~v~~v~Pg~v~t~~~~~~------------~-----~~~~~ 197 (273)
T PRK07825 146 -----------GMATYCASKHAVVGFTDAARLELRGTGVHVSVVLPSFVNTELIAGT------------G-----GAKGF 197 (273)
T ss_pred -----------CCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcCcchhhccc------------c-----cccCC
Confidence 1234999999999888887665 489999999999876542210 0 01123
Q ss_pred cceeHHHHHHHHHHhhcCCCC
Q 023515 229 GWVNVKDVANAHIQAFEVPSA 249 (281)
Q Consensus 229 ~~i~~~D~a~~i~~~~~~~~~ 249 (281)
.++.++|+|+.++.++.++..
T Consensus 198 ~~~~~~~va~~~~~~l~~~~~ 218 (273)
T PRK07825 198 KNVEPEDVAAAIVGTVAKPRP 218 (273)
T ss_pred CCCCHHHHHHHHHHHHhCCCC
Confidence 478999999999999987654
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-23 Score=172.62 Aligned_cols=224 Identities=17% Similarity=0.161 Sum_probs=155.0
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++++++||||+|+||+++++.|+++|++|++++|+.........+. . ...++.++++|+++.++++++++
T Consensus 3 ~~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~-~--~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 79 (263)
T PRK08226 3 KLTGKTALITGALQGIGEGIARVFARHGANLILLDISPEIEKLADELC-G--RGHRCTAVVADVRDPASVAAAIKRAKEK 79 (263)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHH-H--hCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999998763222211111 1 12467889999999988887765
Q ss_pred --CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 --~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|+|||+||.... ...+.+++.+++|+.++.++++++.+.+ +.+++|++||..+..... +
T Consensus 80 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~-~-------- 150 (263)
T PRK08226 80 EGRIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMVAD-P-------- 150 (263)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhcccCC-C--------
Confidence 67999999996322 1223355678999999999999987631 446899999965421100 0
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCC-----CccHHHHHHHHhCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTL-----NTSAAAVLSLIKGAQT 222 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~-----~~~~~~~~~~~~~~~~ 222 (281)
....|+.+|.+.+.+++.+++++ |++++.++||.+.++...... ......+.....+.|
T Consensus 151 ------------~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~p- 217 (263)
T PRK08226 151 ------------GETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIP- 217 (263)
T ss_pred ------------CcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccCHHHHhhhhhccCCCcHHHHHHHhccCC-
Confidence 12349999999999999998764 799999999999987432110 011112222222211
Q ss_pred CCCCCccceeHHHHHHHHHHhhcCC--CCCccEEEecC
Q 023515 223 YPNVTFGWVNVKDVANAHIQAFEVP--SANGRYCLVER 258 (281)
Q Consensus 223 ~~~~~~~~i~~~D~a~~i~~~~~~~--~~~g~~~~~~~ 258 (281)
...+..++|+|+++.+++... ...|..+..++
T Consensus 218 ----~~~~~~~~~va~~~~~l~~~~~~~~~g~~i~~dg 251 (263)
T PRK08226 218 ----LRRLADPLEVGELAAFLASDESSYLTGTQNVIDG 251 (263)
T ss_pred ----CCCCCCHHHHHHHHHHHcCchhcCCcCceEeECC
Confidence 223569999999999998653 23565554443
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-23 Score=172.74 Aligned_cols=219 Identities=15% Similarity=0.083 Sum_probs=153.8
Q ss_pred cCCCeEEEeCCch--HHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 7 AAGKVVCVTGASG--YIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 7 ~~~~~ilItGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
|++|++|||||++ +||++++++|+++|++|++.+|+....+.+..+.... ....++++|++|.++++++++
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~---g~~~~~~~Dv~d~~~v~~~~~~~~~ 81 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESL---GSDFVLPCDVEDIASVDAVFEALEK 81 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhc---CCceEEeCCCCCHHHHHHHHHHHHH
Confidence 5689999999997 9999999999999999999988643222222222111 123478999999988877764
Q ss_pred ---CCcEeEEecccCC---------CCCCCccchhhhhHHHHHHHHHHHhhhCCC-ccEEEEeccceeeecCCCCCCCCe
Q 023515 81 ---GCDGVCHTASPFY---------HDAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAVLNTGKPRTPDV 147 (281)
Q Consensus 81 ---~~d~Vih~a~~~~---------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~ 147 (281)
++|++|||||... +...+.|+..+++|+.++.++++++.+.+. .+++|++||..+..+.+
T Consensus 82 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS~~~~~~~~------- 154 (271)
T PRK06505 82 KWGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTYGGSTRVMP------- 154 (271)
T ss_pred HhCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcCCCccccCC-------
Confidence 6899999998632 123355778899999999999999987642 35899999976543111
Q ss_pred eeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCC
Q 023515 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP 224 (281)
Q Consensus 148 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (281)
....|+.+|++.+.+++.++.++ |++++.|.||.+.++..... .. ............ +
T Consensus 155 ---------------~~~~Y~asKaAl~~l~r~la~el~~~gIrVn~v~PG~i~T~~~~~~-~~-~~~~~~~~~~~~--p 215 (271)
T PRK06505 155 ---------------NYNVMGVAKAALEASVRYLAADYGPQGIRVNAISAGPVRTLAGAGI-GD-ARAIFSYQQRNS--P 215 (271)
T ss_pred ---------------ccchhhhhHHHHHHHHHHHHHHHhhcCeEEEEEecCCccccccccC-cc-hHHHHHHHhhcC--C
Confidence 12349999999999999998874 89999999999988753211 11 111111111111 1
Q ss_pred CCCccceeHHHHHHHHHHhhcCCCC--CccEEEe
Q 023515 225 NVTFGWVNVKDVANAHIQAFEVPSA--NGRYCLV 256 (281)
Q Consensus 225 ~~~~~~i~~~D~a~~i~~~~~~~~~--~g~~~~~ 256 (281)
...+..++|+|+++++++..... .|..+..
T Consensus 216 --~~r~~~peeva~~~~fL~s~~~~~itG~~i~v 247 (271)
T PRK06505 216 --LRRTVTIDEVGGSALYLLSDLSSGVTGEIHFV 247 (271)
T ss_pred --ccccCCHHHHHHHHHHHhCccccccCceEEee
Confidence 12356899999999999975432 5654444
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.3e-24 Score=173.75 Aligned_cols=205 Identities=15% Similarity=0.088 Sum_probs=151.0
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
.+||+++||||+|+||++++++|+++|++|++++|++++...+...... ...++.++++|+++++.+..+++
T Consensus 4 ~~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (241)
T PRK07454 4 NSMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRS--TGVKAAAYSIDLSNPEAIAPGIAELLEQF 81 (241)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--CCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4578999999999999999999999999999999987544333222211 12468899999999988777665
Q ss_pred -CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 -~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
++|+|||+||.... ...+.++..+++|+.++.++++.+.+.+ +.+++|++||..++.+.+
T Consensus 82 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~----------- 150 (241)
T PRK07454 82 GCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGGGLIINVSSIAARNAFP----------- 150 (241)
T ss_pred CCCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCcCCC-----------
Confidence 58999999986322 1234566889999999999998886531 356899999986653111
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCc
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (281)
....|+.+|.+.+.+++.++++ .|++++++|||.+.+|...... ... .. ...
T Consensus 151 -----------~~~~Y~~sK~~~~~~~~~~a~e~~~~gi~v~~i~pg~i~t~~~~~~~------~~~------~~--~~~ 205 (241)
T PRK07454 151 -----------QWGAYCVSKAALAAFTKCLAEEERSHGIRVCTITLGAVNTPLWDTET------VQA------DF--DRS 205 (241)
T ss_pred -----------CccHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCcccCCcccccc------ccc------cc--ccc
Confidence 1235999999999999888754 4899999999999887532110 000 00 012
Q ss_pred cceeHHHHHHHHHHhhcCCCC
Q 023515 229 GWVNVKDVANAHIQAFEVPSA 249 (281)
Q Consensus 229 ~~i~~~D~a~~i~~~~~~~~~ 249 (281)
.++.++|+|+++++++.++..
T Consensus 206 ~~~~~~~va~~~~~l~~~~~~ 226 (241)
T PRK07454 206 AMLSPEQVAQTILHLAQLPPS 226 (241)
T ss_pred cCCCHHHHHHHHHHHHcCCcc
Confidence 357999999999999987754
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.9e-24 Score=181.65 Aligned_cols=209 Identities=14% Similarity=0.120 Sum_probs=153.3
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++++|+||||+|+||++++++|+++|++|++++|+.++.+.+....... ..++.++.+|++|.++++++++
T Consensus 4 ~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~--g~~~~~~~~Dv~d~~~v~~~~~~~~~~ 81 (330)
T PRK06139 4 PLHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRAL--GAEVLVVPTDVTDADQVKALATQAASF 81 (330)
T ss_pred CCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEeeCCCHHHHHHHHHHHHHh
Confidence 356899999999999999999999999999999999875544433322211 2467889999999988888764
Q ss_pred --CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 --GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 --~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|++|||||... +...+.++..+++|+.++.++++++.+.+ +..++|++||..++.+.+
T Consensus 82 ~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~g~iV~isS~~~~~~~p---------- 151 (330)
T PRK06139 82 GGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGHGIFINMISLGGFAAQP---------- 151 (330)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhcCCCC----------
Confidence 6899999998522 22234456789999999999999987642 346899999987654211
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh----cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE----KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (281)
....|+.||++.+.+.+.++.+ .|++++.+.||.+.+|........ .+.. ...
T Consensus 152 ------------~~~~Y~asKaal~~~~~sL~~El~~~~gI~V~~v~Pg~v~T~~~~~~~~~---------~~~~--~~~ 208 (330)
T PRK06139 152 ------------YAAAYSASKFGLRGFSEALRGELADHPDIHVCDVYPAFMDTPGFRHGANY---------TGRR--LTP 208 (330)
T ss_pred ------------CchhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCccCccccccccc---------cccc--ccC
Confidence 1235999999988888888765 279999999999998864321110 0100 011
Q ss_pred CccceeHHHHHHHHHHhhcCCCC
Q 023515 227 TFGWVNVKDVANAHIQAFEVPSA 249 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~~ 249 (281)
...+.+++|+|++++.++++++.
T Consensus 209 ~~~~~~pe~vA~~il~~~~~~~~ 231 (330)
T PRK06139 209 PPPVYDPRRVAKAVVRLADRPRA 231 (330)
T ss_pred CCCCCCHHHHHHHHHHHHhCCCC
Confidence 22367999999999999987654
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.3e-23 Score=168.52 Aligned_cols=219 Identities=16% Similarity=0.173 Sum_probs=154.2
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCc-chhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP-KKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
+++++++||||||+||+++++.|+++|++|+++.|+..+. ..+..+... ...++.++.+|+++.+++.++++
T Consensus 3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (248)
T PRK05557 3 LEGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGA--LGGKALAVQGDVSDAESVERAVDEAKAE 80 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHh--cCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999998888876432 222221111 12468899999999988877665
Q ss_pred --CCcEeEEecccCCCC-----CCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 --GCDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 --~~d~Vih~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|+|||+|+..... ..+.++..+++|+.++.++++++.+.. +.++||++||..+.++.+
T Consensus 81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~~~~~~~~---------- 150 (248)
T PRK05557 81 FGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSVVGLMGNP---------- 150 (248)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcccccCcCCC----------
Confidence 689999999863321 223345778899999999999998641 446899999986665321
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
....|+.+|.+.+.+++.++++ .++++++++||.+.++...+. ............ ..
T Consensus 151 ------------~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~v~pg~~~~~~~~~~---~~~~~~~~~~~~-----~~ 210 (248)
T PRK05557 151 ------------GQANYAASKAGVIGFTKSLARELASRGITVNAVAPGFIETDMTDAL---PEDVKEAILAQI-----PL 210 (248)
T ss_pred ------------CCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccCCcccccc---ChHHHHHHHhcC-----CC
Confidence 1234999999999999887764 389999999999876653321 112222222221 12
Q ss_pred ccceeHHHHHHHHHHhhcCCC--CCc-cEEEec
Q 023515 228 FGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~ 257 (281)
..+++++|+++++.+++.... ..| .|++.+
T Consensus 211 ~~~~~~~~va~~~~~l~~~~~~~~~g~~~~i~~ 243 (248)
T PRK05557 211 GRLGQPEEIASAVAFLASDEAAYITGQTLHVNG 243 (248)
T ss_pred CCCcCHHHHHHHHHHHcCcccCCccccEEEecC
Confidence 346799999999999887622 345 455543
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-23 Score=170.97 Aligned_cols=219 Identities=16% Similarity=0.152 Sum_probs=155.5
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++|+++||||+|+||++++++|+++|++|+++++... ......+... ..++.++++|++|.++++++++
T Consensus 8 l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~-~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 83 (253)
T PRK08993 8 LEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEP-TETIEQVTAL---GRRFLSLTADLRKIDGIPALLERAVAEF 83 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcch-HHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 66899999999999999999999999999998877542 1111222111 2467889999999988887775
Q ss_pred -CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC----CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 -GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP----SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 -~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|++|||||... +...+.+++.+++|+.++.++++++.+.+ ..+++|++||..++.+..
T Consensus 84 ~~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 153 (253)
T PRK08993 84 GHIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGGI---------- 153 (253)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhccCCC----------
Confidence 5899999998632 12234577899999999999999987642 135899999987654211
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
....|+.+|.+.+.+++.++.+ .|++++.++||.+.++...... ............. + .
T Consensus 154 ------------~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pG~v~T~~~~~~~-~~~~~~~~~~~~~---p--~ 215 (253)
T PRK08993 154 ------------RVPSYTASKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNNTQQLR-ADEQRSAEILDRI---P--A 215 (253)
T ss_pred ------------CCcchHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccCcchhhhc-cchHHHHHHHhcC---C--C
Confidence 0124999999999999999876 4899999999999887532111 0111111222211 1 1
Q ss_pred ccceeHHHHHHHHHHhhcCCCC--CccEEEec
Q 023515 228 FGWVNVKDVANAHIQAFEVPSA--NGRYCLVE 257 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~~--~g~~~~~~ 257 (281)
..+..++|+|+++++++..... .|..+..+
T Consensus 216 ~r~~~p~eva~~~~~l~s~~~~~~~G~~~~~d 247 (253)
T PRK08993 216 GRWGLPSDLMGPVVFLASSASDYINGYTIAVD 247 (253)
T ss_pred CCCcCHHHHHHHHHHHhCccccCccCcEEEEC
Confidence 2377899999999999986432 45544443
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-23 Score=171.47 Aligned_cols=209 Identities=18% Similarity=0.170 Sum_probs=148.2
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++++|+||||+|+||++++++|+++|++|++++|+..+.+.+.... +..++++|+++.++++++++
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~-------~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEV-------GGLFVPTDVTDEDAVNALFDTAAET 76 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHc-------CCcEEEeeCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999999765433222111 12578899999988887775
Q ss_pred --CCcEeEEecccCCC-------CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCee
Q 023515 81 --GCDGVCHTASPFYH-------DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVV 148 (281)
Q Consensus 81 --~~d~Vih~a~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (281)
++|+|||+||.... ...+.++..+++|+.++.++++.+.+.+ +..++|++||..+.++...
T Consensus 77 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~g~iv~~sS~~~~~g~~~------- 149 (255)
T PRK06057 77 YGSVDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGKGSIINTASFVAVMGSAT------- 149 (255)
T ss_pred cCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCCcEEEEEcchhhccCCCC-------
Confidence 57999999986321 1123366889999999999998887531 4468999999765542210
Q ss_pred eecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCC
Q 023515 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (281)
Q Consensus 149 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (281)
....|+.+|++.+.+++.++.++ |+++++++||.+.+|..............+..... +
T Consensus 150 --------------~~~~Y~~sKaal~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~---~- 211 (255)
T PRK06057 150 --------------SQISYTASKGGVLAMSRELGVQFARQGIRVNALCPGPVNTPLLQELFAKDPERAARRLVHV---P- 211 (255)
T ss_pred --------------CCcchHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCCcCCchhhhhccCCHHHHHHHHhcC---C-
Confidence 12349999999888888776543 89999999999998864332211112111111111 1
Q ss_pred CCccceeHHHHHHHHHHhhcCC
Q 023515 226 VTFGWVNVKDVANAHIQAFEVP 247 (281)
Q Consensus 226 ~~~~~i~~~D~a~~i~~~~~~~ 247 (281)
...+.+++|+++++..++...
T Consensus 212 -~~~~~~~~~~a~~~~~l~~~~ 232 (255)
T PRK06057 212 -MGRFAEPEEIAAAVAFLASDD 232 (255)
T ss_pred -CCCCcCHHHHHHHHHHHhCcc
Confidence 124789999999999988754
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.4e-23 Score=169.89 Aligned_cols=207 Identities=13% Similarity=0.071 Sum_probs=146.7
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC-CcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN-DPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
+++|+|+||||+|+||+++++.|+++|++|+++.++.. +...+... . ..++.++++|+++++++.++++
T Consensus 3 l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~~~~~~~~~---~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (253)
T PRK08642 3 ISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALADE---L--GDRAIALQADVTDREQVQAMFATATEH 77 (253)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHH---h--CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999988766432 22221111 1 1368889999999988887765
Q ss_pred --C-CcEeEEecccCC-----------CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCC
Q 023515 81 --G-CDGVCHTASPFY-----------HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPR 143 (281)
Q Consensus 81 --~-~d~Vih~a~~~~-----------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~ 143 (281)
+ +|++||+|+... ....+.+++.+++|+.++.++++++.+.+ +.+++|++||..... + .
T Consensus 78 ~g~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~--~--~ 153 (253)
T PRK08642 78 FGKPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINIGTNLFQN--P--V 153 (253)
T ss_pred hCCCCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeEEEEECCccccC--C--C
Confidence 2 899999997521 11123355779999999999999998642 446899999964321 0 0
Q ss_pred CCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC
Q 023515 144 TPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA 220 (281)
Q Consensus 144 ~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~ 220 (281)
.+...|+.+|.+.+.+++.+++++ |++++.|+||.+.++..... .............
T Consensus 154 ------------------~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~i~pG~v~t~~~~~~--~~~~~~~~~~~~~ 213 (253)
T PRK08642 154 ------------------VPYHDYTTAKAALLGLTRNLAAELGPYGITVNMVSGGLLRTTDASAA--TPDEVFDLIAATT 213 (253)
T ss_pred ------------------CCccchHHHHHHHHHHHHHHHHHhCccCeEEEEEeecccCCchhhcc--CCHHHHHHHHhcC
Confidence 012359999999999999998864 79999999999987643221 1112222222211
Q ss_pred CCCCCCCccceeHHHHHHHHHHhhcCC
Q 023515 221 QTYPNVTFGWVNVKDVANAHIQAFEVP 247 (281)
Q Consensus 221 ~~~~~~~~~~i~~~D~a~~i~~~~~~~ 247 (281)
+ ...+.+++|+|+++.+++...
T Consensus 214 ~-----~~~~~~~~~va~~~~~l~~~~ 235 (253)
T PRK08642 214 P-----LRKVTTPQEFADAVLFFASPW 235 (253)
T ss_pred C-----cCCCCCHHHHHHHHHHHcCch
Confidence 1 234789999999999999854
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-23 Score=176.74 Aligned_cols=229 Identities=19% Similarity=0.140 Sum_probs=152.3
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++|+|+||||+|+||++++++|+++|++|++++|+.++........ .++.++++|++|.++++++++
T Consensus 24 l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l------~~v~~~~~Dl~d~~~v~~~~~~~~~~~ 97 (315)
T PRK06196 24 LSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGI------DGVEVVMLDLADLESVRAFAERFLDSG 97 (315)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh------hhCeEEEccCCCHHHHHHHHHHHHhcC
Confidence 46789999999999999999999999999999999865433322211 237889999999988877664
Q ss_pred -CCcEeEEecccCCC---CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeecCC
Q 023515 81 -GCDGVCHTASPFYH---DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (281)
Q Consensus 81 -~~d~Vih~a~~~~~---~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~ 153 (281)
++|+||||||.... ...+.++..+++|+.++..+++.+.+.+ +.+++|++||.....+.. ... ..+...
T Consensus 98 ~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~--~~~--~~~~~~ 173 (315)
T PRK06196 98 RRIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGAGARVVALSSAGHRRSPI--RWD--DPHFTR 173 (315)
T ss_pred CCCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEECCHHhccCCC--Ccc--ccCccC
Confidence 68999999996322 1234567889999999888888776531 346899999975432110 000 000011
Q ss_pred CCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccc
Q 023515 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGW 230 (281)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (281)
+.. ....|+.||.+.+.+++.++++ .|+++++++||.+.++....................... ...+
T Consensus 174 ~~~------~~~~Y~~SK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 244 (315)
T PRK06196 174 GYD------KWLAYGQSKTANALFAVHLDKLGKDQGVRAFSVHPGGILTPLQRHLPREEQVALGWVDEHGNPI---DPGF 244 (315)
T ss_pred CCC------hHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCCcccCCccccCChhhhhhhhhhhhhhhhh---hhhc
Confidence 111 1245999999999999888765 489999999999999864321110000000000000000 0124
Q ss_pred eeHHHHHHHHHHhhcCCCC---CccEE
Q 023515 231 VNVKDVANAHIQAFEVPSA---NGRYC 254 (281)
Q Consensus 231 i~~~D~a~~i~~~~~~~~~---~g~~~ 254 (281)
..++|+|..+++++..+.. +|.|.
T Consensus 245 ~~~~~~a~~~~~l~~~~~~~~~~g~~~ 271 (315)
T PRK06196 245 KTPAQGAATQVWAATSPQLAGMGGLYC 271 (315)
T ss_pred CCHhHHHHHHHHHhcCCccCCCCCeEe
Confidence 6899999999999975432 45554
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-23 Score=175.26 Aligned_cols=210 Identities=16% Similarity=0.130 Sum_probs=150.3
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++++++||||+|+||++++++|+++|++|++++|+.+..+.+... . ..++.++++|+++.+++.++++
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~---~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAA---H--GDAVVGVEGDVRSLDDHKEAVARCVAAF 77 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhh---c--CCceEEEEeccCCHHHHHHHHHHHHHHh
Confidence 5689999999999999999999999999999999976543332221 1 2358889999999887776664
Q ss_pred -CCcEeEEecccCCC------CCC----CccchhhhhHHHHHHHHHHHhhhCC--CccEEEEeccceeeecCCCCCCCCe
Q 023515 81 -GCDGVCHTASPFYH------DAK----DPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDV 147 (281)
Q Consensus 81 -~~d~Vih~a~~~~~------~~~----~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (281)
++|++|||||.... ... +.|+..+++|+.++.++++++.+.+ ..+++|++||..++.+.+
T Consensus 78 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~~sS~~~~~~~~------- 150 (262)
T TIGR03325 78 GKIDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASRGSVIFTISNAGFYPNG------- 150 (262)
T ss_pred CCCCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcCCCEEEEeccceecCCC-------
Confidence 67999999986321 111 2466889999999999999998753 225799999977654211
Q ss_pred eeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc--CCcEEEEcCCcccCCCCCCCCC-ccHH-----HHHHHHhC
Q 023515 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK--SIDLVTINPAMVIGPLLQPTLN-TSAA-----AVLSLIKG 219 (281)
Q Consensus 148 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--g~~~~~irp~~v~g~~~~~~~~-~~~~-----~~~~~~~~ 219 (281)
....|+.+|.+.+.+++.++.++ .+++++|.||.+.++...+... .... ...+....
T Consensus 151 ---------------~~~~Y~~sKaa~~~l~~~la~e~~~~irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (262)
T TIGR03325 151 ---------------GGPLYTAAKHAVVGLVKELAFELAPYVRVNGVAPGGMSSDLRGPKSLGMADKSISTVPLGDMLKS 215 (262)
T ss_pred ---------------CCchhHHHHHHHHHHHHHHHHhhccCeEEEEEecCCCcCCCccccccccccccccccchhhhhhh
Confidence 11349999999999999999875 3899999999999875432100 0000 01111111
Q ss_pred CCCCCCCCccceeHHHHHHHHHHhhcCC
Q 023515 220 AQTYPNVTFGWVNVKDVANAHIQAFEVP 247 (281)
Q Consensus 220 ~~~~~~~~~~~i~~~D~a~~i~~~~~~~ 247 (281)
. .+ ...+..++|+|+++++++...
T Consensus 216 ~--~p--~~r~~~p~eva~~~~~l~s~~ 239 (262)
T TIGR03325 216 V--LP--IGRMPDAEEYTGAYVFFATRG 239 (262)
T ss_pred c--CC--CCCCCChHHhhhheeeeecCC
Confidence 1 11 223678999999999998753
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-23 Score=172.28 Aligned_cols=216 Identities=15% Similarity=0.107 Sum_probs=152.3
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC-cchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------- 80 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------- 80 (281)
+++++||||+|+||++++++|+++|++|+++.|+... ...+...... ...++.++.+|++++++++++++
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRS--HGVRAEIRQLDLSDLPEGAQALDKLIQRLG 79 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHh--cCCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 6799999999999999999999999999988765432 2222222111 12468899999999988777665
Q ss_pred CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC----CccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP----SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 ~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
++|+|||+||.... ...+.++..+++|+.++.++++++.+.+ +.+++|++||.....+.+
T Consensus 80 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~~~~----------- 148 (256)
T PRK12743 80 RIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEHTPLP----------- 148 (256)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeeccccCCCC-----------
Confidence 58999999986332 1224466889999999999999988752 135899999975543111
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCc
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (281)
....|+.+|.+.+.+++.++.++ |++++.++||.++++...... ........... + ..
T Consensus 149 -----------~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~Pg~~~t~~~~~~~---~~~~~~~~~~~---~--~~ 209 (256)
T PRK12743 149 -----------GASAYTAAKHALGGLTKAMALELVEHGILVNAVAPGAIATPMNGMDD---SDVKPDSRPGI---P--LG 209 (256)
T ss_pred -----------CcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCccccccC---hHHHHHHHhcC---C--CC
Confidence 12349999999999999988754 799999999999988633211 11111111111 1 11
Q ss_pred cceeHHHHHHHHHHhhcCCC--CCccEEEe
Q 023515 229 GWVNVKDVANAHIQAFEVPS--ANGRYCLV 256 (281)
Q Consensus 229 ~~i~~~D~a~~i~~~~~~~~--~~g~~~~~ 256 (281)
.+.+++|++.++++++.... ..|.++..
T Consensus 210 ~~~~~~dva~~~~~l~~~~~~~~~G~~~~~ 239 (256)
T PRK12743 210 RPGDTHEIASLVAWLCSEGASYTTGQSLIV 239 (256)
T ss_pred CCCCHHHHHHHHHHHhCccccCcCCcEEEE
Confidence 25689999999999987543 24654443
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-23 Score=173.37 Aligned_cols=209 Identities=13% Similarity=0.099 Sum_probs=149.8
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------CC
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------GC 82 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~ 82 (281)
|+|+||||+|+||++++++|+++|++|++++|+.++.+.+....... ..++.++++|+++.+++.++++ ++
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~i 78 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREA--GGDGFYQRCDVRDYSQLTALAQACEEKWGGI 78 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 47999999999999999999999999999999876544333222211 2468889999999988877765 68
Q ss_pred cEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhC---CCccEEEEeccceeeecCCCCCCCCeeeecCCC
Q 023515 83 DGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWF 154 (281)
Q Consensus 83 d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~ 154 (281)
|+|||+||.... ...+.++..+++|+.++.++++.+.+. .+.+++|++||..++.+.+
T Consensus 79 d~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~vsS~~~~~~~~-------------- 144 (270)
T PRK05650 79 DVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKSGRIVNIASMAGLMQGP-------------- 144 (270)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEECChhhcCCCC--------------
Confidence 999999986332 112345567899999999988886542 1557999999987654211
Q ss_pred CChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccce
Q 023515 155 SDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWV 231 (281)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 231 (281)
....|+.+|++.+.+.+.++.++ |+++++++||.+.++................ ... ....++
T Consensus 145 --------~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~-~~~-----~~~~~~ 210 (270)
T PRK05650 145 --------AMSSYNVAKAGVVALSETLLVELADDEIGVHVVCPSFFQTNLLDSFRGPNPAMKAQV-GKL-----LEKSPI 210 (270)
T ss_pred --------CchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccccCcccccccCchhHHHHH-HHH-----hhcCCC
Confidence 12349999999999998888764 8999999999999876432211111111111 100 012367
Q ss_pred eHHHHHHHHHHhhcCCC
Q 023515 232 NVKDVANAHIQAFEVPS 248 (281)
Q Consensus 232 ~~~D~a~~i~~~~~~~~ 248 (281)
+++|+|+.++.+++++.
T Consensus 211 ~~~~vA~~i~~~l~~~~ 227 (270)
T PRK05650 211 TAADIADYIYQQVAKGE 227 (270)
T ss_pred CHHHHHHHHHHHHhCCC
Confidence 99999999999998654
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-23 Score=171.84 Aligned_cols=221 Identities=14% Similarity=0.087 Sum_probs=153.9
Q ss_pred ccCCCeEEEeCCc--hHHHHHHHHHHHHCCCEEEEEEcCCCCc---chhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc
Q 023515 6 AAAGKVVCVTGAS--GYIASWLVKLLLSRGYTVKASVRDPNDP---KKTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (281)
Q Consensus 6 ~~~~~~ilItGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 80 (281)
.+++|+++||||+ ++||++++++|+++|++|++..|+.+.. +.+.++.. . ...+.++++|++|++++.++++
T Consensus 3 ~l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~Dl~d~~~v~~~~~ 79 (258)
T PRK07370 3 DLTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTE-P--LNPSLFLPCDVQDDAQIEETFE 79 (258)
T ss_pred ccCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHh-c--cCcceEeecCcCCHHHHHHHHH
Confidence 3568999999986 8999999999999999998887754321 11122211 1 1246788999999998887765
Q ss_pred -------CCcEeEEecccCC---------CCCCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCC
Q 023515 81 -------GCDGVCHTASPFY---------HDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPR 143 (281)
Q Consensus 81 -------~~d~Vih~a~~~~---------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~ 143 (281)
++|++|||||... ....+.|+..+++|+.++..+++++.+.+ ..+++|++||..+..+.+
T Consensus 80 ~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~~--- 156 (258)
T PRK07370 80 TIKQKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYLGGVRAIP--- 156 (258)
T ss_pred HHHHHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEeccccccCCc---
Confidence 6899999998632 11234567899999999999999998764 236899999976543111
Q ss_pred CCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC
Q 023515 144 TPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA 220 (281)
Q Consensus 144 ~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~ 220 (281)
....|+.+|++.+.+++.++.++ |+++++|.||.+.++..... ..............
T Consensus 157 -------------------~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~i~PG~v~T~~~~~~-~~~~~~~~~~~~~~ 216 (258)
T PRK07370 157 -------------------NYNVMGVAKAALEASVRYLAAELGPKNIRVNAISAGPIRTLASSAV-GGILDMIHHVEEKA 216 (258)
T ss_pred -------------------ccchhhHHHHHHHHHHHHHHHHhCcCCeEEEEEecCcccCchhhcc-ccchhhhhhhhhcC
Confidence 12349999999999999998865 79999999999988742211 00111111111111
Q ss_pred CCCCCCCccceeHHHHHHHHHHhhcCCCC--CccEEEec
Q 023515 221 QTYPNVTFGWVNVKDVANAHIQAFEVPSA--NGRYCLVE 257 (281)
Q Consensus 221 ~~~~~~~~~~i~~~D~a~~i~~~~~~~~~--~g~~~~~~ 257 (281)
| ...+..++|++.++.+++..... .|+.+..+
T Consensus 217 p-----~~r~~~~~dva~~~~fl~s~~~~~~tG~~i~vd 250 (258)
T PRK07370 217 P-----LRRTVTQTEVGNTAAFLLSDLASGITGQTIYVD 250 (258)
T ss_pred C-----cCcCCCHHHHHHHHHHHhChhhccccCcEEEEC
Confidence 1 12367899999999999975432 45444333
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.6e-23 Score=169.52 Aligned_cols=222 Identities=14% Similarity=0.080 Sum_probs=154.8
Q ss_pred ccCCCeEEEeCCc--hHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 6 AAAGKVVCVTGAS--GYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 6 ~~~~~~ilItGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
.+++|+++||||+ ++||++++++|+++|++|++++|+....+.++++..... ..++.++++|++|+++++++++
T Consensus 4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~ 82 (257)
T PRK08594 4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE-GQESLLLPCDVTSDEEITACFETIK 82 (257)
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC-CCceEEEecCCCCHHHHHHHHHHHH
Confidence 4678999999997 899999999999999999999886433333333322111 2467889999999988877764
Q ss_pred ----CCcEeEEecccCC---------CCCCCccchhhhhHHHHHHHHHHHhhhCCC-ccEEEEeccceeeecCCCCCCCC
Q 023515 81 ----GCDGVCHTASPFY---------HDAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAVLNTGKPRTPD 146 (281)
Q Consensus 81 ----~~d~Vih~a~~~~---------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~ 146 (281)
++|++|||||... +...+.|...+++|+.++..+++++.+.+. ..++|++||..+..+.+
T Consensus 83 ~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~~------ 156 (257)
T PRK08594 83 EEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGGERVVQ------ 156 (257)
T ss_pred HhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCCccCCC------
Confidence 5899999998632 112234567889999999999999988642 36899999976643111
Q ss_pred eeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCC
Q 023515 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY 223 (281)
Q Consensus 147 ~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~ 223 (281)
....|+.+|++.+.+++.++.++ |++++.|.||.+.++..... ............ ..
T Consensus 157 ----------------~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~-~~~~~~~~~~~~-~~-- 216 (257)
T PRK08594 157 ----------------NYNVMGVAKASLEASVKYLANDLGKDGIRVNAISAGPIRTLSAKGV-GGFNSILKEIEE-RA-- 216 (257)
T ss_pred ----------------CCchhHHHHHHHHHHHHHHHHHhhhcCCEEeeeecCcccCHhHhhh-ccccHHHHHHhh-cC--
Confidence 12349999999999999998764 79999999999988642110 000111111111 10
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCCC--CccEEEe
Q 023515 224 PNVTFGWVNVKDVANAHIQAFEVPSA--NGRYCLV 256 (281)
Q Consensus 224 ~~~~~~~i~~~D~a~~i~~~~~~~~~--~g~~~~~ 256 (281)
+ ...+..++|+|+++++++..... .|.....
T Consensus 217 p--~~r~~~p~~va~~~~~l~s~~~~~~tG~~~~~ 249 (257)
T PRK08594 217 P--LRRTTTQEEVGDTAAFLFSDLSRGVTGENIHV 249 (257)
T ss_pred C--ccccCCHHHHHHHHHHHcCcccccccceEEEE
Confidence 1 12357899999999999985433 4544433
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-23 Score=171.51 Aligned_cols=218 Identities=19% Similarity=0.177 Sum_probs=153.8
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
++++++++||||+|+||+++++.|+++|+.|++.+|+.++...+.... ..++.++.+|+++.++++++++
T Consensus 3 ~~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (245)
T PRK12936 3 DLSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAEL-----GERVKIFPANLSDRDEVKALGQKAEAD 77 (245)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh-----CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999988888755433322111 1367889999999988877654
Q ss_pred --CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhC---CCccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 --~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|+|||+||.... ...+.++..+++|+.++.++++++.+. .+.++||++||..+.++.+
T Consensus 78 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~---------- 147 (245)
T PRK12936 78 LEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVVGVTGNP---------- 147 (245)
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHHhCcCCC----------
Confidence 58999999986332 123456688999999999999987642 1457899999987665321
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
....|+.+|.+.+.+++.++++ .|+++++++||.+.++...... ........... ..
T Consensus 148 ------------~~~~Y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~~~----~~~~~~~~~~~----~~ 207 (245)
T PRK12936 148 ------------GQANYCASKAGMIGFSKSLAQEIATRNVTVNCVAPGFIESAMTGKLN----DKQKEAIMGAI----PM 207 (245)
T ss_pred ------------CCcchHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcCcCchhcccC----hHHHHHHhcCC----CC
Confidence 1134999999999998888765 3899999999998776432211 11111111111 12
Q ss_pred ccceeHHHHHHHHHHhhcCCCC--Cc-cEEEecC
Q 023515 228 FGWVNVKDVANAHIQAFEVPSA--NG-RYCLVER 258 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~~--~g-~~~~~~~ 258 (281)
..+..++|+++++++++..... .| .+++.++
T Consensus 208 ~~~~~~~~ia~~~~~l~~~~~~~~~G~~~~~~~g 241 (245)
T PRK12936 208 KRMGTGAEVASAVAYLASSEAAYVTGQTIHVNGG 241 (245)
T ss_pred CCCcCHHHHHHHHHHHcCccccCcCCCEEEECCC
Confidence 2366899999999998875432 35 4555443
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.6e-23 Score=170.38 Aligned_cols=205 Identities=14% Similarity=0.182 Sum_probs=147.8
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------CC
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------GC 82 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~ 82 (281)
|+|+||||+|+||++++++|+++|++|++++|++++...+.... ..++.++.+|++|.+++.++++ ++
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~i 75 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL-----GDNLYIAQLDVRNRAAIEEMLASLPAEWRNI 75 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----ccceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 47999999999999999999999999999999875543332221 1368899999999988877664 68
Q ss_pred cEeEEecccCC------CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeecCC
Q 023515 83 DGVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (281)
Q Consensus 83 d~Vih~a~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~ 153 (281)
|+|||+||... ....+.+++.+++|+.++..+++.+.+.+ +.+++|++||..+..+..
T Consensus 76 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~------------- 142 (248)
T PRK10538 76 DVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYA------------- 142 (248)
T ss_pred CEEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCcccCCCCC-------------
Confidence 99999998532 11234456889999999888888876531 457899999976543111
Q ss_pred CCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCC-CCccHHHHHHHHhCCCCCCCCCcc
Q 023515 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPT-LNTSAAAVLSLIKGAQTYPNVTFG 229 (281)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 229 (281)
....|+.+|.+.+.+++.++.+. ++++++++||.+.|+..... ............. ...
T Consensus 143 ---------~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~i~~~~~~~~~~~~~~~~~~~~~~--------~~~ 205 (248)
T PRK10538 143 ---------GGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKAEKTYQ--------NTV 205 (248)
T ss_pred ---------CCchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCeecccccchhhccCcHHHHHhhcc--------ccC
Confidence 12459999999999999988764 79999999999986643211 0000111111101 123
Q ss_pred ceeHHHHHHHHHHhhcCCCC
Q 023515 230 WVNVKDVANAHIQAFEVPSA 249 (281)
Q Consensus 230 ~i~~~D~a~~i~~~~~~~~~ 249 (281)
++.++|+|+++++++..+..
T Consensus 206 ~~~~~dvA~~~~~l~~~~~~ 225 (248)
T PRK10538 206 ALTPEDVSEAVWWVATLPAH 225 (248)
T ss_pred CCCHHHHHHHHHHHhcCCCc
Confidence 57999999999999986654
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.7e-23 Score=170.35 Aligned_cols=224 Identities=18% Similarity=0.135 Sum_probs=155.9
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++|+++||||+|+||++++++|+++|++|++++|+.++...............++.++.+|++|.+++.++++
T Consensus 5 ~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (265)
T PRK07062 5 QLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEAR 84 (265)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence 467899999999999999999999999999999999876544433322222112368889999999988877654
Q ss_pred --CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 --GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 --~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|++|||||... ....+.|...+++|+.+...+++.+.+.+ +.+++|++||..+..+.+
T Consensus 85 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 154 (265)
T PRK07062 85 FGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASAAASIVCVNSLLALQPEP---------- 154 (265)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCcEEEEeccccccCCCC----------
Confidence 5799999998632 12234567889999999999998887642 346899999986654211
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCC------c-cHHHHHHHHhCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLN------T-SAAAVLSLIKGA 220 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~------~-~~~~~~~~~~~~ 220 (281)
....|+.+|++.+.+++.++.+ .|+++++++||.+.++....... . .......... .
T Consensus 155 ------------~~~~y~asKaal~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 221 (265)
T PRK07062 155 ------------HMVATSAARAGLLNLVKSLATELAPKGVRVNSILLGLVESGQWRRRYEARADPGQSWEAWTAALAR-K 221 (265)
T ss_pred ------------CchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccchhhhHHHHhhccCCChHHHHHHHhh-c
Confidence 1134999999999999988776 38999999999998875321100 0 0011111111 1
Q ss_pred CCCCCCCccceeHHHHHHHHHHhhcCCC--CCccEE
Q 023515 221 QTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYC 254 (281)
Q Consensus 221 ~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~ 254 (281)
...+ ...+..++|+|.++++++.... ..|+.+
T Consensus 222 ~~~p--~~r~~~p~~va~~~~~L~s~~~~~~tG~~i 255 (265)
T PRK07062 222 KGIP--LGRLGRPDEAARALFFLASPLSSYTTGSHI 255 (265)
T ss_pred CCCC--cCCCCCHHHHHHHHHHHhCchhcccccceE
Confidence 0011 1236789999999999987533 245433
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-23 Score=171.56 Aligned_cols=226 Identities=16% Similarity=0.182 Sum_probs=150.6
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC-cchhhhhhh-ccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-PKKTRHLLA-LDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
+++|+++||||+|+||++++++|+++|++|+++.++... .+.+..... ......++.++++|+++++++.++++
T Consensus 6 l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 85 (257)
T PRK12744 6 LKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKA 85 (257)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHH
Confidence 567899999999999999999999999997777765432 222222111 11112468889999999988887765
Q ss_pred ---CCcEeEEecccC-----CCCCCCccchhhhhHHHHHHHHHHHhhhCCC-ccEEEEe-ccceeeecCCCCCCCCeeee
Q 023515 81 ---GCDGVCHTASPF-----YHDAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLT-SSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 ---~~d~Vih~a~~~-----~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~-SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|++||+||.. .....+.++..+++|+.++..+++++.+.+. .++++++ ||...... +
T Consensus 86 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~~~---~-------- 154 (257)
T PRK12744 86 AFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGAFT---P-------- 154 (257)
T ss_pred hhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhcccC---C--------
Confidence 689999999862 2222344678899999999999999987532 3467766 44322110 0
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
....|+.+|++.|.+++.+++++ |+++++++||.+.++...+.............. ...+...
T Consensus 155 ------------~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~--~~~~~~~ 220 (257)
T PRK12744 155 ------------FYSAYAGSKAPVEHFTRAASKEFGARGISVTAVGPGPMDTPFFYPQEGAEAVAYHKTAA--ALSPFSK 220 (257)
T ss_pred ------------CcccchhhHHHHHHHHHHHHHHhCcCceEEEEEecCccccchhccccccchhhcccccc--ccccccc
Confidence 12349999999999999998875 699999999999887532211100000000000 0001112
Q ss_pred ccceeHHHHHHHHHHhhcCCCC-Cc-cEEEec
Q 023515 228 FGWVNVKDVANAHIQAFEVPSA-NG-RYCLVE 257 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~~-~g-~~~~~~ 257 (281)
..+.+++|+|.++.++++.... .| ++++.+
T Consensus 221 ~~~~~~~dva~~~~~l~~~~~~~~g~~~~~~g 252 (257)
T PRK12744 221 TGLTDIEDIVPFIRFLVTDGWWITGQTILING 252 (257)
T ss_pred CCCCCHHHHHHHHHHhhcccceeecceEeecC
Confidence 2578999999999999985321 34 455443
|
|
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5e-23 Score=173.52 Aligned_cols=216 Identities=18% Similarity=0.153 Sum_probs=151.7
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCC---------CCcchhhhhhhccCCCCcEEEEEcCCCCcCcHH
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDP---------NDPKKTRHLLALDGASERLQLFKANLLEEGSFD 76 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~---------~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 76 (281)
.+++|+++||||+++||++++++|+++|++|++++|+. +....+.+.... ...++.++.+|++|.+++.
T Consensus 3 ~l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~Dv~~~~~v~ 80 (286)
T PRK07791 3 LLDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVA--AGGEAVANGDDIADWDGAA 80 (286)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHh--cCCceEEEeCCCCCHHHHH
Confidence 35689999999999999999999999999999998765 222222111111 1246788999999998877
Q ss_pred HHhc-------CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCCC---------ccEEEEecccee
Q 023515 77 SIVD-------GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFPS---------IKRVVLTSSMAA 135 (281)
Q Consensus 77 ~~~~-------~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~---------~~~~v~~SS~~~ 135 (281)
++++ ++|++|||||... ....+.|+..+++|+.++..+++++.+.+. .++||++||..+
T Consensus 81 ~~~~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~~~ 160 (286)
T PRK07791 81 NLVDAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGAG 160 (286)
T ss_pred HHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCchhh
Confidence 7664 6899999998632 223455778999999999999998875321 248999999877
Q ss_pred eecCCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHH
Q 023515 136 VLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAA 212 (281)
Q Consensus 136 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~ 212 (281)
..+.+ ....|+.+|.+.+.+++.++.+ .|++++.|.|| +.++... ..
T Consensus 161 ~~~~~----------------------~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~Pg-~~T~~~~-------~~ 210 (286)
T PRK07791 161 LQGSV----------------------GQGNYSAAKAGIAALTLVAAAELGRYGVTVNAIAPA-ARTRMTE-------TV 210 (286)
T ss_pred CcCCC----------------------CchhhHHHHHHHHHHHHHHHHHHHHhCeEEEEECCC-CCCCcch-------hh
Confidence 65221 1234999999999999998876 48999999998 5444311 11
Q ss_pred HHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCccEEEe
Q 023515 213 VLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLV 256 (281)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~ 256 (281)
....... + +.....+..++|+|+++++++.... ..|.++..
T Consensus 211 ~~~~~~~-~--~~~~~~~~~pedva~~~~~L~s~~~~~itG~~i~v 253 (286)
T PRK07791 211 FAEMMAK-P--EEGEFDAMAPENVSPLVVWLGSAESRDVTGKVFEV 253 (286)
T ss_pred HHHHHhc-C--cccccCCCCHHHHHHHHHHHhCchhcCCCCcEEEE
Confidence 1111111 1 1112235689999999999997533 35655544
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-23 Score=170.44 Aligned_cols=194 Identities=18% Similarity=0.128 Sum_probs=146.8
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcC----CcE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG----CDG 84 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~----~d~ 84 (281)
|++++||||+|+||++++++|+++|++|++++|+++..+.+... ..++.++++|++|.++++++++. +|.
T Consensus 1 ~~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~ 74 (240)
T PRK06101 1 MTAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQ------SANIFTLAFDVTDHPGTKAALSQLPFIPEL 74 (240)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh------cCCCeEEEeeCCCHHHHHHHHHhcccCCCE
Confidence 46899999999999999999999999999999976443322211 13578899999999999888874 589
Q ss_pred eEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCCCCCeeeecCCCCChh
Q 023515 85 VCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPE 158 (281)
Q Consensus 85 Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~ 158 (281)
+||+||.... ...+.++..+++|+.++.++++++.+.+ +.+++|++||..+..+.+
T Consensus 75 ~i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~------------------ 136 (240)
T PRK06101 75 WIFNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIASELALP------------------ 136 (240)
T ss_pred EEEcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhhccCCC------------------
Confidence 9999985221 1223456789999999999999999853 335799999976554211
Q ss_pred hhccCCchhhhhHHHHHHHHHHHHH---hcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeHHH
Q 023515 159 VCKQSELWYPLSKTLAEDAAWKFAK---EKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKD 235 (281)
Q Consensus 159 ~~~~~~~~Y~~sK~~~e~~~~~~~~---~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D 235 (281)
....|+.+|++.+.+++.++. ..|+++++++||.++++...... . .....+.++|
T Consensus 137 ----~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~pg~i~t~~~~~~~-------------~-----~~~~~~~~~~ 194 (240)
T PRK06101 137 ----RAEAYGASKAAVAYFARTLQLDLRPKGIEVVTVFPGFVATPLTDKNT-------------F-----AMPMIITVEQ 194 (240)
T ss_pred ----CCchhhHHHHHHHHHHHHHHHHHHhcCceEEEEeCCcCCCCCcCCCC-------------C-----CCCcccCHHH
Confidence 123499999999999998874 35899999999999987533210 0 0112468999
Q ss_pred HHHHHHHhhcCCC
Q 023515 236 VANAHIQAFEVPS 248 (281)
Q Consensus 236 ~a~~i~~~~~~~~ 248 (281)
+|+.++..++...
T Consensus 195 ~a~~i~~~i~~~~ 207 (240)
T PRK06101 195 ASQEIRAQLARGK 207 (240)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999998764
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-23 Score=170.22 Aligned_cols=209 Identities=17% Similarity=0.153 Sum_probs=145.6
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEE-cCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASV-RDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------- 80 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------- 80 (281)
|++++||||+|+||++++++|+++|++|+++. |+.++........... ..++.++++|++|+++++++++
T Consensus 1 ~~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~i~~~~~~~~~~~~ 78 (247)
T PRK09730 1 MAIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQA--GGKAFVLQADISDENQVVAMFTAIDQHDE 78 (247)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhC--CCeEEEEEccCCCHHHHHHHHHHHHHhCC
Confidence 46899999999999999999999999998754 4433222222221111 2458889999999998888766
Q ss_pred CCcEeEEecccCCC------CCCCccchhhhhHHHHHHHHHHHhhhCC------CccEEEEeccceeeecCCCCCCCCee
Q 023515 81 GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFP------SIKRVVLTSSMAAVLNTGKPRTPDVV 148 (281)
Q Consensus 81 ~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~~------~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (281)
++|+|||+|+.... ...+.++..+++|+.++.++++++.+.+ ..++||++||..++++.+.
T Consensus 79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~~~~~------- 151 (247)
T PRK09730 79 PLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRLGAPG------- 151 (247)
T ss_pred CCCEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhccCCCC-------
Confidence 46899999986321 1223355789999999999888877641 1356999999877653210
Q ss_pred eecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCC
Q 023515 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (281)
Q Consensus 149 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (281)
....|+.+|.+.+.+++.++.+ .+++++++||+.++||...... ............+ .
T Consensus 152 --------------~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~i~pg~~~~~~~~~~~--~~~~~~~~~~~~~-~-- 212 (247)
T PRK09730 152 --------------EYVDYAASKGAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASGG--EPGRVDRVKSNIP-M-- 212 (247)
T ss_pred --------------cccchHhHHHHHHHHHHHHHHHHHHhCeEEEEEEeCCCcCcccccCC--CHHHHHHHHhcCC-C--
Confidence 0123999999999999988765 3899999999999998643221 1122222222221 1
Q ss_pred CCccceeHHHHHHHHHHhhcCC
Q 023515 226 VTFGWVNVKDVANAHIQAFEVP 247 (281)
Q Consensus 226 ~~~~~i~~~D~a~~i~~~~~~~ 247 (281)
. ...+++|+|+++++++...
T Consensus 213 ~--~~~~~~dva~~~~~~~~~~ 232 (247)
T PRK09730 213 Q--RGGQPEEVAQAIVWLLSDK 232 (247)
T ss_pred C--CCcCHHHHHHHHHhhcChh
Confidence 1 1348999999999999754
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=168.60 Aligned_cols=210 Identities=14% Similarity=0.094 Sum_probs=149.9
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------C
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------G 81 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~ 81 (281)
+|+++||||+|+||+++++.|+++|++|++++|+..+...+....... ..++.++++|++|++++.++++ +
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQF--PGQVLTVQMDVRNPEDVQKMVEQIDEKFGR 78 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 478999999999999999999999999999999865544433322211 2468899999999988877664 5
Q ss_pred CcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC----CccEEEEeccceeeecCCCCCCCCeeeecC
Q 023515 82 CDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP----SIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (281)
Q Consensus 82 ~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~ 152 (281)
+|+|||+||... +...+.|+..+++|+.++.++++++.+.+ ..+++|++||..++....
T Consensus 79 id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~~------------ 146 (252)
T PRK07677 79 IDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAWDAGP------------ 146 (252)
T ss_pred ccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhhccCCC------------
Confidence 799999998522 22234467889999999999999996531 236899999976543110
Q ss_pred CCCChhhhccCCchhhhhHHHHHHHHHHHHHhc----CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCc
Q 023515 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK----SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (281)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (281)
....|+.+|.+.+.+++.++.++ |++++.++||.+.++..............+..... + ..
T Consensus 147 ----------~~~~Y~~sKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~~~~~~~~~~~~~~~~~~~~~~~---~--~~ 211 (252)
T PRK07677 147 ----------GVIHSAAAKAGVLAMTRTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWESEEAAKRTIQSV---P--LG 211 (252)
T ss_pred ----------CCcchHHHHHHHHHHHHHHHHHhCcccCeEEEEEeecccccccccccccCCHHHHHHHhccC---C--CC
Confidence 12349999999999999887763 79999999999986432111111122222222221 1 12
Q ss_pred cceeHHHHHHHHHHhhcCC
Q 023515 229 GWVNVKDVANAHIQAFEVP 247 (281)
Q Consensus 229 ~~i~~~D~a~~i~~~~~~~ 247 (281)
.+..++|+++++.+++...
T Consensus 212 ~~~~~~~va~~~~~l~~~~ 230 (252)
T PRK07677 212 RLGTPEEIAGLAYFLLSDE 230 (252)
T ss_pred CCCCHHHHHHHHHHHcCcc
Confidence 3679999999999998754
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.7e-23 Score=169.06 Aligned_cols=217 Identities=17% Similarity=0.156 Sum_probs=155.5
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEE-EcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKAS-VRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
+++++|+||||+|+||.++++.|+++|++|+++ .|+..+...+.+.... ...++.++.+|+++++.+.++++
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKE--EGGDAIAVKADVSSEEDVENLVEQIVEK 80 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999998 8876544333222211 12468899999999988877765
Q ss_pred --CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 --~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|+|||+||.... ...+.++..+++|+.++.++++.+.+.+ +.+++|++||...+++.+
T Consensus 81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~~~---------- 150 (247)
T PRK05565 81 FGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISSIWGLIGAS---------- 150 (247)
T ss_pred hCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCHhhccCCC----------
Confidence 68999999986421 2234456889999999999999888641 456799999987765321
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
....|+.+|.+.+.+++.++++. |+++++++||.+.++...... ........... ..
T Consensus 151 ------------~~~~y~~sK~a~~~~~~~~~~~~~~~gi~~~~v~pg~v~t~~~~~~~---~~~~~~~~~~~-----~~ 210 (247)
T PRK05565 151 ------------CEVLYSASKGAVNAFTKALAKELAPSGIRVNAVAPGAIDTEMWSSFS---EEDKEGLAEEI-----PL 210 (247)
T ss_pred ------------CccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCccCccccccC---hHHHHHHHhcC-----CC
Confidence 11349999999999988887753 899999999999876533211 11111111111 12
Q ss_pred ccceeHHHHHHHHHHhhcCCCC--CccEEE
Q 023515 228 FGWVNVKDVANAHIQAFEVPSA--NGRYCL 255 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~~--~g~~~~ 255 (281)
..+..++|+++++++++..... .|.+..
T Consensus 211 ~~~~~~~~va~~~~~l~~~~~~~~~g~~~~ 240 (247)
T PRK05565 211 GRLGKPEEIAKVVLFLASDDASYITGQIIT 240 (247)
T ss_pred CCCCCHHHHHHHHHHHcCCccCCccCcEEE
Confidence 3467999999999999976543 455443
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-23 Score=171.60 Aligned_cols=220 Identities=18% Similarity=0.141 Sum_probs=157.1
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++++|+||||+|+||++++++|+++|++|++++|+.++.+.+....... ..++.++.+|+++.+++.++++
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAE--GGAAHVVSLDVTDYQSIKAAVAHAETEA 84 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 56899999999999999999999999999999999876544433322111 2468899999999988888765
Q ss_pred -CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC-----------CccEEEEeccceeeecCCCCC
Q 023515 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP-----------SIKRVVLTSSMAAVLNTGKPR 143 (281)
Q Consensus 81 -~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~-----------~~~~~v~~SS~~~~~~~~~~~ 143 (281)
++|+|||+|+.... ...+.++..+++|+.++.++++++.+.+ ..+++|++||..++.+.+
T Consensus 85 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~--- 161 (258)
T PRK06949 85 GTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGLRVLP--- 161 (258)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECcccccCCCC---
Confidence 58999999985321 1224466889999999999999887431 135899999976653110
Q ss_pred CCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC
Q 023515 144 TPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA 220 (281)
Q Consensus 144 ~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~ 220 (281)
....|+.+|.+.+.+++.++.+ .++++++++||.+++|.....+.. ...... ...
T Consensus 162 -------------------~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pG~v~t~~~~~~~~~--~~~~~~-~~~ 219 (258)
T PRK06949 162 -------------------QIGLYCMSKAAVVHMTRAMALEWGRHGINVNAICPGYIDTEINHHHWET--EQGQKL-VSM 219 (258)
T ss_pred -------------------CccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCCcCCcchhccCh--HHHHHH-Hhc
Confidence 1235999999999999998876 489999999999998864321111 111111 111
Q ss_pred CCCCCCCccceeHHHHHHHHHHhhcCCC--CCccEEEec
Q 023515 221 QTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVE 257 (281)
Q Consensus 221 ~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~ 257 (281)
.+ ...+..++|+++++.+++.... ..|.++..+
T Consensus 220 --~~--~~~~~~p~~~~~~~~~l~~~~~~~~~G~~i~~d 254 (258)
T PRK06949 220 --LP--RKRVGKPEDLDGLLLLLAADESQFINGAIISAD 254 (258)
T ss_pred --CC--CCCCcCHHHHHHHHHHHhChhhcCCCCcEEEeC
Confidence 11 1246689999999999998543 356555443
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.2e-23 Score=168.51 Aligned_cols=165 Identities=21% Similarity=0.209 Sum_probs=131.1
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---C
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---G 81 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---~ 81 (281)
++++++|+||||+|+||++++++|+++|+ +|++++|+.++... ...++.++++|+.|.+.+.++++ .
T Consensus 3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~---------~~~~~~~~~~D~~~~~~~~~~~~~~~~ 73 (238)
T PRK08264 3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD---------LGPRVVPLQLDVTDPASVAAAAEAASD 73 (238)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh---------cCCceEEEEecCCCHHHHHHHHHhcCC
Confidence 35678999999999999999999999998 99999998654321 12468899999999998888776 5
Q ss_pred CcEeEEeccc-CC-----CCCCCccchhhhhHHHHHHHHHHHhhhC---CCccEEEEeccceeeecCCCCCCCCeeeecC
Q 023515 82 CDGVCHTASP-FY-----HDAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (281)
Q Consensus 82 ~d~Vih~a~~-~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~ 152 (281)
+|+|||+||. .. ....+.++..+++|+.++.++++++.+. .+.++||++||..++.+.+
T Consensus 74 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~~~------------ 141 (238)
T PRK08264 74 VTILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSWVNFP------------ 141 (238)
T ss_pred CCEEEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhccCCC------------
Confidence 8999999987 21 1223445678899999999999998753 1456899999977654211
Q ss_pred CCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCC
Q 023515 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPL 201 (281)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~ 201 (281)
....|+.+|.+.+.+++.++.+. +++++++||+.+.++.
T Consensus 142 ----------~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~v~pg~v~t~~ 183 (238)
T PRK08264 142 ----------NLGTYSASKAAAWSLTQALRAELAPQGTRVLGVHPGPIDTDM 183 (238)
T ss_pred ----------CchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeCCcccccc
Confidence 12459999999999999887764 8999999999998764
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=172.35 Aligned_cols=234 Identities=16% Similarity=0.091 Sum_probs=149.3
Q ss_pred hhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 4 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
|+++++|+|+||||+|+||++++++|+++|++|++++|+.++...............++.++++|++|.++++++++
T Consensus 11 ~~~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~ 90 (306)
T PRK06197 11 IPDQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALR 90 (306)
T ss_pred cccCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHH
Confidence 45667899999999999999999999999999999999865443322211111112468899999999988877765
Q ss_pred ----CCcEeEEecccCCC---CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 ----GCDGVCHTASPFYH---DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 ----~~d~Vih~a~~~~~---~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|+||||||.... ...+.++..+++|+.++..+++.+.+.+ +.++||++||.....+.. .......
T Consensus 91 ~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~---~~~~~~~ 167 (306)
T PRK06197 91 AAYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVPGSRVVTVSSGGHRIRAA---IHFDDLQ 167 (306)
T ss_pred hhCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCCCCEEEEECCHHHhccCC---CCccccC
Confidence 58999999986322 2234566889999999666655555431 456999999976432111 0001111
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEE--EcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVT--INPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~--irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (281)
++.+.. +...|+.||.+.+.+++.+++++ |+++++ +.||.|.++...... .......... +
T Consensus 168 ~~~~~~------~~~~Y~~SK~a~~~~~~~la~~l~~~~i~v~~v~~~PG~v~T~~~~~~~----~~~~~~~~~~---~- 233 (306)
T PRK06197 168 WERRYN------RVAAYGQSKLANLLFTYELQRRLAAAGATTIAVAAHPGVSNTELARNLP----RALRPVATVL---A- 233 (306)
T ss_pred cccCCC------cHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEeCCCcccCcccccCc----HHHHHHHHHH---H-
Confidence 111111 22459999999999999988764 666554 479999887543211 1111111110 0
Q ss_pred CCccceeHHHHHHHHHHhhcCCC-CCccEEE
Q 023515 226 VTFGWVNVKDVANAHIQAFEVPS-ANGRYCL 255 (281)
Q Consensus 226 ~~~~~i~~~D~a~~i~~~~~~~~-~~g~~~~ 255 (281)
.+-...++..+..++.+...+. .+|.|+.
T Consensus 234 -~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~ 263 (306)
T PRK06197 234 -PLLAQSPEMGALPTLRAATDPAVRGGQYYG 263 (306)
T ss_pred -hhhcCCHHHHHHHHHHHhcCCCcCCCeEEc
Confidence 0012356777777777766543 3565543
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.5e-23 Score=169.84 Aligned_cols=218 Identities=19% Similarity=0.173 Sum_probs=149.5
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCC-CCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDP-NDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------- 80 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------- 80 (281)
+|+|+||||+|+||+++++.|+++|++|+++.++. +....+...... ...++.++++|+++.+++.++++
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 79 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRA--AGGRACVVAGDVANEADVIAMFDAVQSAFG 79 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh--cCCcEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence 67899999999999999999999999998776543 222222222111 12468899999999988776654
Q ss_pred CCcEeEEecccCCC------CCCCccchhhhhHHHHHHHHHHHhhhCCC------ccEEEEeccceeeecCCCCCCCCee
Q 023515 81 GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFPS------IKRVVLTSSMAAVLNTGKPRTPDVV 148 (281)
Q Consensus 81 ~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (281)
++|+|||+||.... ...+.++..+++|+.++..+++.+.+.+. ..+||++||..+.++...
T Consensus 80 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~~~------- 152 (248)
T PRK06947 80 RLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGSPN------- 152 (248)
T ss_pred CCCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcCCCCC-------
Confidence 58999999986321 12233457789999999999876665322 236999999877653210
Q ss_pred eecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCC
Q 023515 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (281)
Q Consensus 149 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (281)
....|+.+|.+.+.+++.+++++ |+++++++||.+.+|...... ........ .... +
T Consensus 153 --------------~~~~Y~~sK~~~~~~~~~la~~~~~~~i~v~~i~Pg~v~t~~~~~~~--~~~~~~~~-~~~~--~- 212 (248)
T PRK06947 153 --------------EYVDYAGSKGAVDTLTLGLAKELGPHGVRVNAVRPGLIETEIHASGG--QPGRAARL-GAQT--P- 212 (248)
T ss_pred --------------CCcccHhhHHHHHHHHHHHHHHhhhhCcEEEEEeccCcccccccccC--CHHHHHHH-hhcC--C-
Confidence 01249999999999999988765 799999999999988533211 11111111 1111 1
Q ss_pred CCccceeHHHHHHHHHHhhcCCC--CCccEEEe
Q 023515 226 VTFGWVNVKDVANAHIQAFEVPS--ANGRYCLV 256 (281)
Q Consensus 226 ~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~ 256 (281)
...+..++|+++.+++++.+.. ..|.++..
T Consensus 213 -~~~~~~~e~va~~~~~l~~~~~~~~~G~~~~~ 244 (248)
T PRK06947 213 -LGRAGEADEVAETIVWLLSDAASYVTGALLDV 244 (248)
T ss_pred -CCCCcCHHHHHHHHHHHcCccccCcCCceEee
Confidence 1114689999999999998754 35655443
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-23 Score=172.84 Aligned_cols=215 Identities=19% Similarity=0.130 Sum_probs=147.3
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-CCcEeEE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-GCDGVCH 87 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-~~d~Vih 87 (281)
+++||||||||+||++++++|+++|++|++++|++.+...+....... ..++.++++|++|++.+..+++ ++|+|||
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~id~vi~ 79 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARR--GLALRVEKLDLTDAIDRAQAAEWDVDVLLN 79 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcceEEEeeCCCHHHHHHHhcCCCCEEEE
Confidence 578999999999999999999999999999999865443333222211 2358899999999999988877 8999999
Q ss_pred ecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhC---CCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhh
Q 023515 88 TASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEV 159 (281)
Q Consensus 88 ~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~ 159 (281)
|||.... ...+.++..+++|+.++.++.+.+.+. .+.++||++||..+..+.+
T Consensus 80 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~SS~~~~~~~~------------------- 140 (257)
T PRK09291 80 NAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGKGKVVFTSSMAGLITGP------------------- 140 (257)
T ss_pred CCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEcChhhccCCC-------------------
Confidence 9986321 122335577889999998887766542 1457999999976544211
Q ss_pred hccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC-C-CCCCCCccceeHH
Q 023515 160 CKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA-Q-TYPNVTFGWVNVK 234 (281)
Q Consensus 160 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~i~~~ 234 (281)
....|+.+|.+.|.+++.++.+ .|++++++|||.+.++............... .... + .......+++.++
T Consensus 141 ---~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~~~~v~pg~~~t~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 216 (257)
T PRK09291 141 ---FTGAYCASKHALEAIAEAMHAELKPFGIQVATVNPGPYLTGFNDTMAETPKRWYDP-ARNFTDPEDLAFPLEQFDPQ 216 (257)
T ss_pred ---CcchhHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccccchhhhhhhhhhhcch-hhHHHhhhhhhccccCCCHH
Confidence 1235999999999999887664 5999999999988654321110000000000 0000 0 0012233467899
Q ss_pred HHHHHHHHhhcCCC
Q 023515 235 DVANAHIQAFEVPS 248 (281)
Q Consensus 235 D~a~~i~~~~~~~~ 248 (281)
|+++.++.++..+.
T Consensus 217 ~~~~~~~~~l~~~~ 230 (257)
T PRK09291 217 EMIDAMVEVIPADT 230 (257)
T ss_pred HHHHHHHHHhcCCC
Confidence 99999999887543
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.5e-23 Score=169.47 Aligned_cols=219 Identities=15% Similarity=0.149 Sum_probs=152.2
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++|+++||||+|+||++++++|+++|++|+++.|+.++. ...+.. .++.++++|++|++++.++++
T Consensus 5 l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~--~~~l~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 77 (255)
T PRK06463 5 FKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENE--AKELRE-----KGVFTIKCDVGNRDQVKKSKEVVEKEF 77 (255)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHH--HHHHHh-----CCCeEEEecCCCHHHHHHHHHHHHHHc
Confidence 5679999999999999999999999999999887765322 111111 147889999999988887765
Q ss_pred -CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 -GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 -~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
++|+||||||... ....+.++..+++|+.++..+++.+.+.+ +.+++|++||..++.... +
T Consensus 78 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~~~-~--------- 147 (255)
T PRK06463 78 GRVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSKNGAIVNIASNAGIGTAA-E--------- 147 (255)
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHhCCCCC-C---------
Confidence 5899999998632 12234566889999999888877766532 456899999986653110 0
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCC-CccHHHHHHHHhCCCCCCCCC
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTL-NTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 227 (281)
....|+.+|++.+.+++.++.+ .|+++++++||.+.++...... ............... ..
T Consensus 148 -----------~~~~Y~asKaa~~~~~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~----~~ 212 (255)
T PRK06463 148 -----------GTTFYAITKAGIIILTRRLAFELGKYGIRVNAVAPGWVETDMTLSGKSQEEAEKLRELFRNKT----VL 212 (255)
T ss_pred -----------CccHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCCCchhhcccCccchHHHHHHHHhCC----Cc
Confidence 1234999999999999999876 4899999999999877532111 000011111111111 12
Q ss_pred ccceeHHHHHHHHHHhhcCCCC--Ccc-EEEec
Q 023515 228 FGWVNVKDVANAHIQAFEVPSA--NGR-YCLVE 257 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~~--~g~-~~~~~ 257 (281)
..+..++|+|+++++++..... .|. +.+.+
T Consensus 213 ~~~~~~~~va~~~~~l~s~~~~~~~G~~~~~dg 245 (255)
T PRK06463 213 KTTGKPEDIANIVLFLASDDARYITGQVIVADG 245 (255)
T ss_pred CCCcCHHHHHHHHHHHcChhhcCCCCCEEEECC
Confidence 3367899999999999976542 454 44444
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.3e-23 Score=171.13 Aligned_cols=224 Identities=14% Similarity=0.074 Sum_probs=157.1
Q ss_pred hccCCCeEEEeCCchHHHHHHHHHHHHCCCE-EEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYT-VKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 5 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
+.+++|+|+||||+|+||++++++|+++|++ |++++|+.++......... ....++.++.+|+++++++.++++
T Consensus 2 ~~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~--~~~~~~~~~~~D~~~~~~~~~~~~~~~ 79 (260)
T PRK06198 2 GRLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELE--ALGAKAVFVQADLSDVEDCRRVVAAAD 79 (260)
T ss_pred CCCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHH--hcCCeEEEEEccCCCHHHHHHHHHHHH
Confidence 4467899999999999999999999999998 9999997654433222211 112467889999999988877765
Q ss_pred ----CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC----CccEEEEeccceeeecCCCCCCCCe
Q 023515 81 ----GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP----SIKRVVLTSSMAAVLNTGKPRTPDV 147 (281)
Q Consensus 81 ----~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (281)
++|+|||+||... +...+.++..+++|+.++.++++++.+.+ ..+++|++||..++.+.+
T Consensus 80 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~~------- 152 (260)
T PRK06198 80 EAFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHGGQP------- 152 (260)
T ss_pred HHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCCC-------
Confidence 5799999998632 12234456789999999999999987642 135799999987654211
Q ss_pred eeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCC---C-CccHHHHHHHHhCC
Q 023515 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPT---L-NTSAAAVLSLIKGA 220 (281)
Q Consensus 148 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~---~-~~~~~~~~~~~~~~ 220 (281)
....|+.+|.+.|.+++.++.++ +++++.++||.++++..... . .....+.......
T Consensus 153 ---------------~~~~Y~~sK~a~~~~~~~~a~e~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~- 216 (260)
T PRK06198 153 ---------------FLAAYCASKGALATLTRNAAYALLRNRIRVNGLNIGWMATEGEDRIQREFHGAPDDWLEKAAAT- 216 (260)
T ss_pred ---------------CcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEeeccccCcchhhhhhhccCCChHHHHHHhcc-
Confidence 12349999999999999988754 69999999999998753210 0 0011112111111
Q ss_pred CCCCCCCccceeHHHHHHHHHHhhcCCCC--Cc-cEEEec
Q 023515 221 QTYPNVTFGWVNVKDVANAHIQAFEVPSA--NG-RYCLVE 257 (281)
Q Consensus 221 ~~~~~~~~~~i~~~D~a~~i~~~~~~~~~--~g-~~~~~~ 257 (281)
.....+++++|+++++++++..... .| .+...+
T Consensus 217 ----~~~~~~~~~~~~a~~~~~l~~~~~~~~~G~~~~~~~ 252 (260)
T PRK06198 217 ----QPFGRLLDPDEVARAVAFLLSDESGLMTGSVIDFDQ 252 (260)
T ss_pred ----CCccCCcCHHHHHHHHHHHcChhhCCccCceEeECC
Confidence 1133478999999999999875532 45 344443
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8e-23 Score=168.88 Aligned_cols=200 Identities=16% Similarity=0.122 Sum_probs=148.5
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------C
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------G 81 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~ 81 (281)
+++++||||+|+||++++++|+++|++|++++|++.+...+...........++.++++|+++++++.++++ +
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGG 81 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 678999999999999999999999999999999876544433322211112468999999999988777654 6
Q ss_pred CcEeEEecccCCCC-----CCCccchhhhhHHHHHHHHHHHhhhC---CCccEEEEeccceeeecCCCCCCCCeeeecCC
Q 023515 82 CDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (281)
Q Consensus 82 ~d~Vih~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~ 153 (281)
+|+|||+||..... ..+.++..+++|+.++.++++++.+. .+.++||++||..+..+.+.
T Consensus 82 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~------------ 149 (248)
T PRK08251 82 LDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGSGHLVLISSVSAVRGLPG------------ 149 (248)
T ss_pred CCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeccccccCCCC------------
Confidence 89999999863321 12334567899999999999988643 15678999999876653210
Q ss_pred CCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccc
Q 023515 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGW 230 (281)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (281)
....|+.+|.+.+.+++.++.++ ++++++++||.+.++..... . .....
T Consensus 150 ---------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~------------~-------~~~~~ 201 (248)
T PRK08251 150 ---------VKAAYAASKAGVASLGEGLRAELAKTPIKVSTIEPGYIRSEMNAKA------------K-------STPFM 201 (248)
T ss_pred ---------CcccHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcCcchhhhcc------------c-------cCCcc
Confidence 11349999999999998888654 79999999999987642210 0 01225
Q ss_pred eeHHHHHHHHHHhhcCCC
Q 023515 231 VNVKDVANAHIQAFEVPS 248 (281)
Q Consensus 231 i~~~D~a~~i~~~~~~~~ 248 (281)
+.++|.|+.++.++++..
T Consensus 202 ~~~~~~a~~i~~~~~~~~ 219 (248)
T PRK08251 202 VDTETGVKALVKAIEKEP 219 (248)
T ss_pred CCHHHHHHHHHHHHhcCC
Confidence 789999999999998654
|
|
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.2e-23 Score=168.22 Aligned_cols=213 Identities=21% Similarity=0.221 Sum_probs=153.0
Q ss_pred hhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchh-hhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--
Q 023515 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKT-RHLLALDGASERLQLFKANLLEEGSFDSIVD-- 80 (281)
Q Consensus 4 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-- 80 (281)
|..+.+|+|+|||||.+||.++|.+|+++|.+++.+.|+..+.+.+ +++.+.... .++..+++|++|.++.++.++
T Consensus 7 ~e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~-~~v~~~~~Dvs~~~~~~~~~~~~ 85 (282)
T KOG1205|consen 7 MERLAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSL-EKVLVLQLDVSDEESVKKFVEWA 85 (282)
T ss_pred HHHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCc-CccEEEeCccCCHHHHHHHHHHH
Confidence 4557899999999999999999999999999999999988777776 333332221 269999999999998887653
Q ss_pred -----CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCCC---ccEEEEeccceeeecCCCCCCCCe
Q 023515 81 -----GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFPS---IKRVVLTSSMAAVLNTGKPRTPDV 147 (281)
Q Consensus 81 -----~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~---~~~~v~~SS~~~~~~~~~~~~~~~ 147 (281)
++|++|||||... .......+..+++|+.|+..+.+++.+++. -++||.+||+++....+
T Consensus 86 ~~~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~~~~P------- 158 (282)
T KOG1205|consen 86 IRHFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGKMPLP------- 158 (282)
T ss_pred HHhcCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccccccCCC-------
Confidence 8999999999632 222344557999999999999999999742 37899999998876322
Q ss_pred eeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhcCC---cEE-EEcCCcccCCCCCCCCCccHHHHHHHHhCCCCC
Q 023515 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSI---DLV-TINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY 223 (281)
Q Consensus 148 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~---~~~-~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~ 223 (281)
....|++||++.+.+.+.+..+..- .+. ++-||.|-+....+..... .+.
T Consensus 159 ---------------~~~~Y~ASK~Al~~f~etLR~El~~~~~~i~i~V~PG~V~Te~~~~~~~~~--------~~~--- 212 (282)
T KOG1205|consen 159 ---------------FRSIYSASKHALEGFFETLRQELIPLGTIIIILVSPGPIETEFTGKELLGE--------EGK--- 212 (282)
T ss_pred ---------------cccccchHHHHHHHHHHHHHHHhhccCceEEEEEecCceeecccchhhccc--------ccc---
Confidence 1124999999999999999887622 121 5889999776433211100 000
Q ss_pred CCCCccceeHHHHHH--HHHHhhcCCCCCc
Q 023515 224 PNVTFGWVNVKDVAN--AHIQAFEVPSANG 251 (281)
Q Consensus 224 ~~~~~~~i~~~D~a~--~i~~~~~~~~~~g 251 (281)
.....+...+|++. .+..++..+...+
T Consensus 213 -~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 241 (282)
T KOG1205|consen 213 -SQQGPFLRTEDVADPEAVAYAISTPPCRQ 241 (282)
T ss_pred -ccccchhhhhhhhhHHHHHHHHhcCcccc
Confidence 12233445666654 6777776655433
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=166.74 Aligned_cols=211 Identities=19% Similarity=0.143 Sum_probs=150.5
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC-cchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.++++++||||+|+||++++++|+++|++|+++.|+... ...+...... ...++.++.+|+++.+++.++++
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEA--AGGRAIAVQADVADAAAVTRLFDAAETA 80 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999888776532 1122111111 12468899999999988888776
Q ss_pred --CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCCCCCeeeecC
Q 023515 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (281)
Q Consensus 81 --~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~ 152 (281)
++|+|||+||.... ...+.++..+++|+.++.++++++.+.+ ..+++|++||.....+.+
T Consensus 81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~------------ 148 (245)
T PRK12937 81 FGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIALPLP------------ 148 (245)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeeccccCCCC------------
Confidence 68999999986331 1233466788999999999999998753 235899999975543110
Q ss_pred CCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCcc
Q 023515 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG 229 (281)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (281)
....|+.+|.+.+.+++.++.++ ++++++++||.+.++..... ..........+.. ....
T Consensus 149 ----------~~~~Y~~sK~a~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~--~~~~~~~~~~~~~-----~~~~ 211 (245)
T PRK12937 149 ----------GYGPYAASKAAVEGLVHVLANELRGRGITVNAVAPGPVATELFFNG--KSAEQIDQLAGLA-----PLER 211 (245)
T ss_pred ----------CCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCccCchhccc--CCHHHHHHHHhcC-----CCCC
Confidence 12459999999999999987764 79999999999987752211 1112222222221 1223
Q ss_pred ceeHHHHHHHHHHhhcCCC
Q 023515 230 WVNVKDVANAHIQAFEVPS 248 (281)
Q Consensus 230 ~i~~~D~a~~i~~~~~~~~ 248 (281)
+.+++|+++++.+++....
T Consensus 212 ~~~~~d~a~~~~~l~~~~~ 230 (245)
T PRK12937 212 LGTPEEIAAAVAFLAGPDG 230 (245)
T ss_pred CCCHHHHHHHHHHHcCccc
Confidence 5689999999999997643
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.7e-23 Score=170.75 Aligned_cols=216 Identities=17% Similarity=0.200 Sum_probs=150.9
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcch----hhhhh-hccCCCCcEEEEEcCCCCcCcHHHHhc
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKK----TRHLL-ALDGASERLQLFKANLLEEGSFDSIVD 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----~~~~~-~~~~~~~~~~~~~~D~~~~~~~~~~~~ 80 (281)
.+++++++||||+|+||++++++|+++|++|++++|+.+.... +.... .......++.++++|+++++.+.++++
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~ 82 (273)
T PRK08278 3 SLSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVA 82 (273)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHH
Confidence 3568999999999999999999999999999999997653221 11110 011112468889999999998877765
Q ss_pred -------CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCC
Q 023515 81 -------GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTP 145 (281)
Q Consensus 81 -------~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~ 145 (281)
++|+|||+||.... ...+.++..+++|+.++.++++++.+.+ +..++|++||.......
T Consensus 83 ~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~------ 156 (273)
T PRK08278 83 KAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNLDPK------ 156 (273)
T ss_pred HHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhcccc------
Confidence 68999999986321 1223456788999999999999998742 23579999985432100
Q ss_pred CeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCc-ccCCCCCCCCCccHHHHHHHHhCCC
Q 023515 146 DVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAM-VIGPLLQPTLNTSAAAVLSLIKGAQ 221 (281)
Q Consensus 146 ~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~-v~g~~~~~~~~~~~~~~~~~~~~~~ 221 (281)
.+ .....|+.+|.+.|.+++.++.++ +++++.+.|+. +.++... ....+.
T Consensus 157 -------~~-------~~~~~Y~~sK~a~~~~~~~la~el~~~~I~v~~i~Pg~~i~t~~~~-----------~~~~~~- 210 (273)
T PRK08278 157 -------WF-------APHTAYTMAKYGMSLCTLGLAEEFRDDGIAVNALWPRTTIATAAVR-----------NLLGGD- 210 (273)
T ss_pred -------cc-------CCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCccccHHHH-----------hccccc-
Confidence 00 012459999999999999998865 89999999984 4443211 110111
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCCC--CCccEEEe
Q 023515 222 TYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLV 256 (281)
Q Consensus 222 ~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~ 256 (281)
.....+..++|+|+++++++.... ..|.+++.
T Consensus 211 ---~~~~~~~~p~~va~~~~~l~~~~~~~~~G~~~~~ 244 (273)
T PRK08278 211 ---EAMRRSRTPEIMADAAYEILSRPAREFTGNFLID 244 (273)
T ss_pred ---ccccccCCHHHHHHHHHHHhcCccccceeEEEec
Confidence 112236799999999999998654 35665543
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=168.08 Aligned_cols=223 Identities=13% Similarity=0.059 Sum_probs=155.9
Q ss_pred hhccCCCeEEEeCCc--hHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-
Q 023515 4 VAAAAGKVVCVTGAS--GYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD- 80 (281)
Q Consensus 4 ~~~~~~~~ilItGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~- 80 (281)
.+.+++|+++||||+ ++||++++++|+++|++|++++|+....+.+.+..... ....++++|++|.++++++++
T Consensus 5 ~~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~v~~~~~~ 81 (258)
T PRK07533 5 LLPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEEL---DAPIFLPLDVREPGQLEAVFAR 81 (258)
T ss_pred ccccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhh---ccceEEecCcCCHHHHHHHHHH
Confidence 344678999999998 59999999999999999999998754322222221111 234678999999988877664
Q ss_pred ------CCcEeEEecccCCC---------CCCCccchhhhhHHHHHHHHHHHhhhCCC-ccEEEEeccceeeecCCCCCC
Q 023515 81 ------GCDGVCHTASPFYH---------DAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAVLNTGKPRT 144 (281)
Q Consensus 81 ------~~d~Vih~a~~~~~---------~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~ 144 (281)
++|++|||||.... ...+.|+..+++|+.++.++++.+.+.+. ..++|++||..+....+
T Consensus 82 ~~~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~~~~~~~---- 157 (258)
T PRK07533 82 IAEEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYGAEKVVE---- 157 (258)
T ss_pred HHHHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEeccccccCCc----
Confidence 58999999986321 12345678999999999999999988643 35799999875432100
Q ss_pred CCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCC
Q 023515 145 PDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ 221 (281)
Q Consensus 145 ~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~ 221 (281)
....|+.+|++.+.+++.++.++ |+++.+|.||.+.++..... ..............+
T Consensus 158 ------------------~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~v~PG~v~T~~~~~~-~~~~~~~~~~~~~~p 218 (258)
T PRK07533 158 ------------------NYNLMGPVKAALESSVRYLAAELGPKGIRVHAISPGPLKTRAASGI-DDFDALLEDAAERAP 218 (258)
T ss_pred ------------------cchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcCChhhhcc-CCcHHHHHHHHhcCC
Confidence 12349999999999999988764 89999999999988753211 111122222222111
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCCC--CCccEEEec
Q 023515 222 TYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVE 257 (281)
Q Consensus 222 ~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~ 257 (281)
...+..++|+|.++++++.... ..|..+..+
T Consensus 219 -----~~r~~~p~dva~~~~~L~s~~~~~itG~~i~vd 251 (258)
T PRK07533 219 -----LRRLVDIDDVGAVAAFLASDAARRLTGNTLYID 251 (258)
T ss_pred -----cCCCCCHHHHHHHHHHHhChhhccccCcEEeeC
Confidence 1236789999999999997532 356554443
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-22 Score=164.66 Aligned_cols=199 Identities=18% Similarity=0.128 Sum_probs=144.4
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------C
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------G 81 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------~ 81 (281)
++|+|+||||+|+||++++++|+++|++|++++|+..+. . ...++++|+++.+++.++++ +
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~~-~------------~~~~~~~D~~~~~~~~~~~~~~~~~~~ 68 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAIDD-F------------PGELFACDLADIEQTAATLAQINEIHP 68 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCcccc-c------------CceEEEeeCCCHHHHHHHHHHHHHhCC
Confidence 468999999999999999999999999999999986541 0 12578899999988877765 6
Q ss_pred CcEeEEecccCCCC-----CCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeecCC
Q 023515 82 CDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (281)
Q Consensus 82 ~d~Vih~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~ 153 (281)
+|+|||+||..... ..+.++..+++|+.++.++++++.+.+ +.+++|++||...+. .+
T Consensus 69 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~-~~------------- 134 (234)
T PRK07577 69 VDAIVNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQGRIVNICSRAIFG-AL------------- 134 (234)
T ss_pred CcEEEECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccccccC-CC-------------
Confidence 89999999864321 223455788999999999988887632 457899999975432 11
Q ss_pred CCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccc
Q 023515 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGW 230 (281)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (281)
....|+.+|.+.+.+++.++.+ .|++++++|||.+.++.................... + ...+
T Consensus 135 ---------~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~---~--~~~~ 200 (234)
T PRK07577 135 ---------DRTSYSAAKSALVGCTRTWALELAEYGITVNAVAPGPIETELFRQTRPVGSEEEKRVLASI---P--MRRL 200 (234)
T ss_pred ---------CchHHHHHHHHHHHHHHHHHHHHHhhCcEEEEEecCcccCcccccccccchhHHHHHhhcC---C--CCCC
Confidence 1134999999999999988765 389999999999988753221111111111122211 1 1124
Q ss_pred eeHHHHHHHHHHhhcCC
Q 023515 231 VNVKDVANAHIQAFEVP 247 (281)
Q Consensus 231 i~~~D~a~~i~~~~~~~ 247 (281)
..++|+|.+++.++..+
T Consensus 201 ~~~~~~a~~~~~l~~~~ 217 (234)
T PRK07577 201 GTPEEVAAAIAFLLSDD 217 (234)
T ss_pred cCHHHHHHHHHHHhCcc
Confidence 58999999999999865
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-22 Score=169.18 Aligned_cols=211 Identities=16% Similarity=0.117 Sum_probs=149.6
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------C
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------G 81 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~ 81 (281)
||+++||||+|+||++++++|+++|++|++++|+..+...+.. .++.++.+|+++.+.+.++++ +
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~--------~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 72 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAA--------AGFTAVQLDVNDGAALARLAEELEAEHGG 72 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--------CCCeEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 4789999999999999999999999999999997654322211 246788999999888877664 6
Q ss_pred CcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC--CccEEEEeccceeeecCCCCCCCCeeeecCCC
Q 023515 82 CDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWF 154 (281)
Q Consensus 82 ~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~ 154 (281)
+|+|||+||.... ...+.++..+++|+.++.++++++.+.+ +.+++|++||..++.+.+
T Consensus 73 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~-------------- 138 (274)
T PRK05693 73 LDVLINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRSRGLVVNIGSVSGVLVTP-------------- 138 (274)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCEEEEECCccccCCCC--------------
Confidence 8999999986321 1224466889999999999999987642 346899999977654211
Q ss_pred CChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCc----------cH---HHHHHHHh
Q 023515 155 SDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNT----------SA---AAVLSLIK 218 (281)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~----------~~---~~~~~~~~ 218 (281)
....|+.+|.+.+.+++.++.+ +|+++++++||.+.++........ .. ..+.....
T Consensus 139 --------~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (274)
T PRK05693 139 --------FAGAYCASKAAVHALSDALRLELAPFGVQVMEVQPGAIASQFASNASREAEQLLAEQSPWWPLREHIQARAR 210 (274)
T ss_pred --------CccHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccccccccccccchhhcCCCCCccHHHHHHHHHHHH
Confidence 1235999999999999888765 589999999999988743321100 00 00111111
Q ss_pred CCCCCCCCCccceeHHHHHHHHHHhhcCCCCCccEEE
Q 023515 219 GAQTYPNVTFGWVNVKDVANAHIQAFEVPSANGRYCL 255 (281)
Q Consensus 219 ~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~~~g~~~~ 255 (281)
.. ......++|+|+.++.+++++.....|..
T Consensus 211 ~~------~~~~~~~~~~a~~i~~~~~~~~~~~~~~~ 241 (274)
T PRK05693 211 AS------QDNPTPAAEFARQLLAAVQQSPRPRLVRL 241 (274)
T ss_pred hc------cCCCCCHHHHHHHHHHHHhCCCCCceEEe
Confidence 00 01245799999999999987654334433
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-23 Score=171.38 Aligned_cols=203 Identities=20% Similarity=0.163 Sum_probs=148.1
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--------
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------- 80 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------- 80 (281)
||+++||||||+||++++++|+++|++|++++|+.+....+..... ..++.++++|+++.+++.++++
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~ 76 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG----AGNAWTGALDVTDRAAWDAALADFAAATGG 76 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc----CCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 4789999999999999999999999999999998754433322211 2468899999999888777654
Q ss_pred CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeecC
Q 023515 81 GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (281)
Q Consensus 81 ~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~ 152 (281)
++|+||||||.... ...+.++..+++|+.++.++++++.+.+ +.+++|++||..+.++..
T Consensus 77 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~------------ 144 (260)
T PRK08267 77 RLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSASAIYGQP------------ 144 (260)
T ss_pred CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCchhhCcCCC------------
Confidence 46999999986332 1223456889999999999999987531 457899999987765322
Q ss_pred CCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCcc
Q 023515 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG 229 (281)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (281)
....|+.+|.+.+.+++.++.+ .++++++++||.+.++....... ......... ...
T Consensus 145 ----------~~~~Y~~sKaa~~~~~~~l~~~~~~~~i~v~~i~pg~~~t~~~~~~~~---~~~~~~~~~-------~~~ 204 (260)
T PRK08267 145 ----------GLAVYSATKFAVRGLTEALDLEWRRHGIRVADVMPLFVDTAMLDGTSN---EVDAGSTKR-------LGV 204 (260)
T ss_pred ----------CchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCcCCcccccccc---hhhhhhHhh-------ccC
Confidence 1234999999999999998765 37999999999998765332100 001111110 111
Q ss_pred ceeHHHHHHHHHHhhcCC
Q 023515 230 WVNVKDVANAHIQAFEVP 247 (281)
Q Consensus 230 ~i~~~D~a~~i~~~~~~~ 247 (281)
.+.++|+|++++.+++++
T Consensus 205 ~~~~~~va~~~~~~~~~~ 222 (260)
T PRK08267 205 RLTPEDVAEAVWAAVQHP 222 (260)
T ss_pred CCCHHHHHHHHHHHHhCC
Confidence 467899999999999754
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-22 Score=171.79 Aligned_cols=202 Identities=16% Similarity=0.133 Sum_probs=148.9
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++++|+||||+|+||++++++|+++|++|++++|+.+..+.+....... ...+.++++|++|.+++.++++
T Consensus 38 ~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~--~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 115 (293)
T PRK05866 38 LTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRA--GGDAMAVPCDLSDLDAVDALVADVEKRI 115 (293)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 45789999999999999999999999999999999865544433222111 2357889999999998888776
Q ss_pred -CCcEeEEecccCCCCC-------CCccchhhhhHHHHHHHHHHHhhhC---CCccEEEEeccceeeecCCCCCCCCeee
Q 023515 81 -GCDGVCHTASPFYHDA-------KDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (281)
Q Consensus 81 -~~d~Vih~a~~~~~~~-------~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (281)
++|+||||||...... .+.++..+++|+.++.++++++.+. .+.+++|++||.+++.+.. +
T Consensus 116 g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~-p------- 187 (293)
T PRK05866 116 GGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGDGHIINVATWGVLSEAS-P------- 187 (293)
T ss_pred CCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCCCC-C-------
Confidence 7899999998632211 1234578899999999999887642 2457899999975542100 0
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCC
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (281)
....|+.+|++.+.+++.++.++ |+++++++||.+-++...+.. . . .
T Consensus 188 -------------~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~pg~v~T~~~~~~~-----------~-~-----~ 237 (293)
T PRK05866 188 -------------LFSVYNASKAALSAVSRVIETEWGDRGVHSTTLYYPLVATPMIAPTK-----------A-Y-----D 237 (293)
T ss_pred -------------CcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEEcCcccCccccccc-----------c-c-----c
Confidence 12359999999999999887764 899999999998877532110 0 0 0
Q ss_pred CccceeHHHHHHHHHHhhcCCC
Q 023515 227 TFGWVNVKDVANAHIQAFEVPS 248 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~ 248 (281)
....+.++++|+.++.+++++.
T Consensus 238 ~~~~~~pe~vA~~~~~~~~~~~ 259 (293)
T PRK05866 238 GLPALTADEAAEWMVTAARTRP 259 (293)
T ss_pred CCCCCCHHHHHHHHHHHHhcCC
Confidence 1224689999999999998654
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-22 Score=170.46 Aligned_cols=220 Identities=14% Similarity=0.110 Sum_probs=152.5
Q ss_pred cCCCeEEEeCCc--hHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 7 AAGKVVCVTGAS--GYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 7 ~~~~~ilItGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
+++|+++||||+ ++||+++++.|+++|++|++.+|+....+.+........ .. .++++|++|.++++++++
T Consensus 3 l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~--~~-~~~~~Dv~d~~~v~~~~~~i~~ 79 (274)
T PRK08415 3 MKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELG--SD-YVYELDVSKPEHFKSLAESLKK 79 (274)
T ss_pred cCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC--Cc-eEEEecCCCHHHHHHHHHHHHH
Confidence 468999999997 799999999999999999999887432222222221111 22 578999999988877765
Q ss_pred ---CCcEeEEecccCC---------CCCCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCCCCCe
Q 023515 81 ---GCDGVCHTASPFY---------HDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDV 147 (281)
Q Consensus 81 ---~~d~Vih~a~~~~---------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (281)
++|++|||||... +...+.|+..+++|+.++..+++++.+.+ ..+++|++||.++..+.+
T Consensus 80 ~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~~~~~~~------- 152 (274)
T PRK08415 80 DLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYLGGVKYVP------- 152 (274)
T ss_pred HcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCCCccCCC-------
Confidence 6799999999632 12234567899999999999999999864 236899999976543110
Q ss_pred eeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCC
Q 023515 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP 224 (281)
Q Consensus 148 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (281)
....|+.||++.+.+++.++.++ |+++++|.||.+.++....... . ........... +
T Consensus 153 ---------------~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~-~-~~~~~~~~~~~--p 213 (274)
T PRK08415 153 ---------------HYNVMGVAKAALESSVRYLAVDLGKKGIRVNAISAGPIKTLAASGIGD-F-RMILKWNEINA--P 213 (274)
T ss_pred ---------------cchhhhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHhccch-h-hHHhhhhhhhC--c
Confidence 12349999999999999998764 8999999999998864221100 0 00111101010 1
Q ss_pred CCCccceeHHHHHHHHHHhhcCCC--CCccEEEec
Q 023515 225 NVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVE 257 (281)
Q Consensus 225 ~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~ 257 (281)
...+..++|+|+++++++.... ..|..+..+
T Consensus 214 --l~r~~~pedva~~v~fL~s~~~~~itG~~i~vd 246 (274)
T PRK08415 214 --LKKNVSIEEVGNSGMYLLSDLSSGVTGEIHYVD 246 (274)
T ss_pred --hhccCCHHHHHHHHHHHhhhhhhcccccEEEEc
Confidence 1236789999999999998532 356444443
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.1e-23 Score=168.03 Aligned_cols=201 Identities=19% Similarity=0.167 Sum_probs=148.5
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++++|+||||+|+||++++++|+++|++|++++|++.+...+....... .++.++++|+++.+++.++++
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAF 80 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 45789999999999999999999999999999999875443332221111 468899999999988877665
Q ss_pred -CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC--CccEEEEeccceeeecCCCCCCCCeeeecC
Q 023515 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (281)
Q Consensus 81 -~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~ 152 (281)
++|+|||+|+.... ...+.+++.+++|+.++.++++++.+.+ +.+++|++||..+..+..
T Consensus 81 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~------------ 148 (237)
T PRK07326 81 GGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSLAGTNFFA------------ 148 (237)
T ss_pred CCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECChhhccCCC------------
Confidence 68999999986321 2233355788999999999999988642 346899999976543111
Q ss_pred CCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCcc
Q 023515 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG 229 (281)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (281)
....|+.+|++.+.+++.++.+ .|++++++||+.+.++....... .....
T Consensus 149 ----------~~~~y~~sk~a~~~~~~~~~~~~~~~gi~v~~v~pg~~~t~~~~~~~~-----------------~~~~~ 201 (237)
T PRK07326 149 ----------GGAAYNASKFGLVGFSEAAMLDLRQYGIKVSTIMPGSVATHFNGHTPS-----------------EKDAW 201 (237)
T ss_pred ----------CCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeccccCcccccccc-----------------hhhhc
Confidence 1234999999999999887654 48999999999997764221100 00011
Q ss_pred ceeHHHHHHHHHHhhcCCCC
Q 023515 230 WVNVKDVANAHIQAFEVPSA 249 (281)
Q Consensus 230 ~i~~~D~a~~i~~~~~~~~~ 249 (281)
.+.++|++++++.++..+..
T Consensus 202 ~~~~~d~a~~~~~~l~~~~~ 221 (237)
T PRK07326 202 KIQPEDIAQLVLDLLKMPPR 221 (237)
T ss_pred cCCHHHHHHHHHHHHhCCcc
Confidence 37899999999999987754
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-22 Score=164.64 Aligned_cols=208 Identities=16% Similarity=0.138 Sum_probs=147.4
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------C
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------G 81 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~ 81 (281)
+|+++||||+|+||++++++|+++|++|++++|++.+.. .... . .++.++.+|++|.+++.++++ +
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~--~~~~-~----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 74 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAI--DGLR-Q----AGAQCIQADFSTNAGIMAFIDELKQHTDG 74 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhHH--HHHH-H----cCCEEEEcCCCCHHHHHHHHHHHHhhCCC
Confidence 578999999999999999999999999999999765321 1111 1 236788999999988777654 4
Q ss_pred CcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---C--ccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 82 CDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---S--IKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 82 ~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~--~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
+|++|||||.... ...+.++..+++|+.++..+.+.+.+.+ + .+++|++||.....+.+
T Consensus 75 id~lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~~----------- 143 (236)
T PRK06483 75 LRAIIHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVVEKGSD----------- 143 (236)
T ss_pred ccEEEECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhhccCCC-----------
Confidence 8999999986321 1234567889999999999888887742 2 35899999975432111
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc--CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCcc
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK--SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG 229 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (281)
....|+.+|.+.+.+++.++.++ ++++++|+||.+..+... ............ .. ..
T Consensus 144 -----------~~~~Y~asKaal~~l~~~~a~e~~~~irvn~v~Pg~~~~~~~~-----~~~~~~~~~~~~-~~----~~ 202 (236)
T PRK06483 144 -----------KHIAYAASKAALDNMTLSFAAKLAPEVKVNSIAPALILFNEGD-----DAAYRQKALAKS-LL----KI 202 (236)
T ss_pred -----------CCccHHHHHHHHHHHHHHHHHHHCCCcEEEEEccCceecCCCC-----CHHHHHHHhccC-cc----cc
Confidence 12349999999999999999875 589999999998643211 111111121111 11 12
Q ss_pred ceeHHHHHHHHHHhhcCCCCCccEEE
Q 023515 230 WVNVKDVANAHIQAFEVPSANGRYCL 255 (281)
Q Consensus 230 ~i~~~D~a~~i~~~~~~~~~~g~~~~ 255 (281)
+..++|+|+++.+++......|..+.
T Consensus 203 ~~~~~~va~~~~~l~~~~~~~G~~i~ 228 (236)
T PRK06483 203 EPGEEEIIDLVDYLLTSCYVTGRSLP 228 (236)
T ss_pred CCCHHHHHHHHHHHhcCCCcCCcEEE
Confidence 45799999999999975545564433
|
|
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-22 Score=168.28 Aligned_cols=221 Identities=14% Similarity=0.080 Sum_probs=152.2
Q ss_pred ccCCCeEEEeCC--chHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 6 AAAGKVVCVTGA--SGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 6 ~~~~~~ilItGa--tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
.+++|+++|||| +++||++++++|+++|++|++..|.....+.++++.... .....+++|++|+++++++++
T Consensus 3 ~~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~ 79 (261)
T PRK08690 3 FLQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAEL---DSELVFRCDVASDDEINQVFADLG 79 (261)
T ss_pred ccCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhcc---CCceEEECCCCCHHHHHHHHHHHH
Confidence 356899999997 679999999999999999999877532222222222111 234578999999998887764
Q ss_pred ----CCcEeEEecccCCC----------CCCCccchhhhhHHHHHHHHHHHhhhCC--CccEEEEeccceeeecCCCCCC
Q 023515 81 ----GCDGVCHTASPFYH----------DAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRT 144 (281)
Q Consensus 81 ----~~d~Vih~a~~~~~----------~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~ 144 (281)
++|++|||||.... ...+.|+..+++|+.++..+.+.+.+.+ +.+++|++||..+..+.+
T Consensus 80 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~~g~Iv~iss~~~~~~~~---- 155 (261)
T PRK08690 80 KHWDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGAVRAIP---- 155 (261)
T ss_pred HHhCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhcCcEEEEEcccccccCCC----
Confidence 68999999997432 1123456778899999999999887753 235799999976653111
Q ss_pred CCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCC
Q 023515 145 PDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ 221 (281)
Q Consensus 145 ~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~ 221 (281)
....|+.+|++.+.+++.++.+ +|++++.|.||.+.++..... ..............|
T Consensus 156 ------------------~~~~Y~asKaal~~l~~~la~e~~~~gIrVn~i~PG~v~T~~~~~~-~~~~~~~~~~~~~~p 216 (261)
T PRK08690 156 ------------------NYNVMGMAKASLEAGIRFTAACLGKEGIRCNGISAGPIKTLAASGI-ADFGKLLGHVAAHNP 216 (261)
T ss_pred ------------------CcccchhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccchhhhcC-CchHHHHHHHhhcCC
Confidence 1234999999999999988765 489999999999988742211 111111111211111
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCCCC--CccEEEec
Q 023515 222 TYPNVTFGWVNVKDVANAHIQAFEVPSA--NGRYCLVE 257 (281)
Q Consensus 222 ~~~~~~~~~i~~~D~a~~i~~~~~~~~~--~g~~~~~~ 257 (281)
...+..++|+|+++.+++..... .|..+..+
T Consensus 217 -----~~r~~~peevA~~v~~l~s~~~~~~tG~~i~vd 249 (261)
T PRK08690 217 -----LRRNVTIEEVGNTAAFLLSDLSSGITGEITYVD 249 (261)
T ss_pred -----CCCCCCHHHHHHHHHHHhCcccCCcceeEEEEc
Confidence 22367899999999999986433 55444443
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.3e-23 Score=169.34 Aligned_cols=220 Identities=18% Similarity=0.141 Sum_probs=153.5
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------CC
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------GC 82 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~ 82 (281)
|+++||||+|+||.+++++|+++|++|+++.|+......+.+.... ...++.++.+|++|++++.++++ ++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~i 78 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQ--AGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGF 78 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 5799999999999999999999999999999875433332222211 12468899999999988877654 57
Q ss_pred cEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC----CccEEEEeccceeeecCCCCCCCCeeeecCC
Q 023515 83 DGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP----SIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (281)
Q Consensus 83 d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~ 153 (281)
|+|||+|+.... ...+.++..+++|+.++..+++++.+.+ ..+++|++||..+.++.+
T Consensus 79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~------------- 145 (254)
T TIGR02415 79 DVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAASIAGHEGNP------------- 145 (254)
T ss_pred CEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecchhhcCCCC-------------
Confidence 999999986321 2234456789999999998888877531 236899999977665321
Q ss_pred CCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCc--------cHHHHHHHHhCCCC
Q 023515 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNT--------SAAAVLSLIKGAQT 222 (281)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~--------~~~~~~~~~~~~~~ 222 (281)
....|+.+|++.+.+++.+++++ ++++++++||.+.++........ ...........
T Consensus 146 ---------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 213 (254)
T TIGR02415 146 ---------ILSAYSSTKFAVRGLTQTAAQELAPKGITVNAYCPGIVKTPMWEEIDEETSEIAGKPIGEGFEEFSSE--- 213 (254)
T ss_pred ---------CCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccChhhhhhhhhhhhcccCchHHHHHHHHhh---
Confidence 12459999999999999888764 79999999999987652211000 00001111110
Q ss_pred CCCCCccceeHHHHHHHHHHhhcCCCC--CccEEEecC
Q 023515 223 YPNVTFGWVNVKDVANAHIQAFEVPSA--NGRYCLVER 258 (281)
Q Consensus 223 ~~~~~~~~i~~~D~a~~i~~~~~~~~~--~g~~~~~~~ 258 (281)
.....+.+++|+++++.+++..... .|.++..++
T Consensus 214 --~~~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~d~ 249 (254)
T TIGR02415 214 --IALGRPSEPEDVAGLVSFLASEDSDYITGQSILVDG 249 (254)
T ss_pred --CCCCCCCCHHHHHHHHHhhcccccCCccCcEEEecC
Confidence 0112378999999999999997643 466655543
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-22 Score=166.03 Aligned_cols=218 Identities=15% Similarity=0.128 Sum_probs=153.8
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++++++||||+|+||+++++.|+++|++|++++|+..+.....+.... ...++.++++|+++.+++.++++
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGA--LGTEVRGYAANVTDEEDVEATFAQIAEDF 80 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--cCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 5688999999999999999999999999999999986543332222111 12468889999999887766554
Q ss_pred -CCcEeEEecccCCC--------------CCCCccchhhhhHHHHHHHHHHHhhhCC----CccEEEEeccceeeecCCC
Q 023515 81 -GCDGVCHTASPFYH--------------DAKDPQVELLDPAVKGTLNVLNSCAKFP----SIKRVVLTSSMAAVLNTGK 141 (281)
Q Consensus 81 -~~d~Vih~a~~~~~--------------~~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~~~v~~SS~~~~~~~~~ 141 (281)
++|+|||+||.... ...+.++..+++|+.++.++++.+.+.+ ....+|++||... ++.+
T Consensus 81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~~~iv~~ss~~~-~~~~- 158 (253)
T PRK08217 81 GQLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISSIAR-AGNM- 158 (253)
T ss_pred CCCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEccccc-cCCC-
Confidence 47999999985321 1123345678899999998887766531 2347999998643 3211
Q ss_pred CCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHh
Q 023515 142 PRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIK 218 (281)
Q Consensus 142 ~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~ 218 (281)
....|+.+|.+.+.+++.++++ .+++++.++||.+.++..... ..........
T Consensus 159 ---------------------~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~pg~v~t~~~~~~---~~~~~~~~~~ 214 (253)
T PRK08217 159 ---------------------GQTNYSASKAGVAAMTVTWAKELARYGIRVAAIAPGVIETEMTAAM---KPEALERLEK 214 (253)
T ss_pred ---------------------CCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCcccccc---CHHHHHHHHh
Confidence 1234999999999999998865 489999999999988764321 1222222222
Q ss_pred CCCCCCCCCccceeHHHHHHHHHHhhcCCCCCc-cEEEec
Q 023515 219 GAQTYPNVTFGWVNVKDVANAHIQAFEVPSANG-RYCLVE 257 (281)
Q Consensus 219 ~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~~~g-~~~~~~ 257 (281)
.. ....+.+++|+|+++.+++......| .|++.+
T Consensus 215 ~~-----~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~~~g 249 (253)
T PRK08217 215 MI-----PVGRLGEPEEIAHTVRFIIENDYVTGRVLEIDG 249 (253)
T ss_pred cC-----CcCCCcCHHHHHHHHHHHHcCCCcCCcEEEeCC
Confidence 22 12346799999999999997654455 555544
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-22 Score=166.29 Aligned_cols=219 Identities=21% Similarity=0.157 Sum_probs=155.5
Q ss_pred cCCCeEEEeCCch-HHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 7 AAGKVVCVTGASG-YIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 7 ~~~~~ilItGatG-~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
+++++++||||+| .||+++++.|+++|++|++++|+..+.+......+......++.++++|++++++++.+++
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 94 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVER 94 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4579999999997 7999999999999999999998765443332222111111368889999999988877664
Q ss_pred --CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---C-ccEEEEeccceeeecCCCCCCCCeee
Q 023515 81 --GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---S-IKRVVLTSSMAAVLNTGKPRTPDVVV 149 (281)
Q Consensus 81 --~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~-~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (281)
++|+||||||... ....+.++..+++|+.++..+++++.+.+ + ..++|++||..+..+.+
T Consensus 95 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~~~~~~~--------- 165 (262)
T PRK07831 95 LGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVLGWRAQH--------- 165 (262)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCCCC---------
Confidence 5799999998532 11234566788999999999999988642 2 46899999876543111
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCC
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (281)
....|+.+|++.+.+++.++.+ +|+++++|+||.+.+|...... ............+
T Consensus 166 -------------~~~~Y~~sKaal~~~~~~la~e~~~~gI~v~~i~Pg~~~t~~~~~~~--~~~~~~~~~~~~~----- 225 (262)
T PRK07831 166 -------------GQAHYAAAKAGVMALTRCSALEAAEYGVRINAVAPSIAMHPFLAKVT--SAELLDELAAREA----- 225 (262)
T ss_pred -------------CCcchHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccCccccccc--CHHHHHHHHhcCC-----
Confidence 1234999999999999999876 4899999999999988643211 1222222222211
Q ss_pred CccceeHHHHHHHHHHhhcCCC--CCccEE
Q 023515 227 TFGWVNVKDVANAHIQAFEVPS--ANGRYC 254 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~--~~g~~~ 254 (281)
...+..++|+|+++++++.... ..|..+
T Consensus 226 ~~r~~~p~~va~~~~~l~s~~~~~itG~~i 255 (262)
T PRK07831 226 FGRAAEPWEVANVIAFLASDYSSYLTGEVV 255 (262)
T ss_pred CCCCcCHHHHHHHHHHHcCchhcCcCCceE
Confidence 2236789999999999998643 245443
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-22 Score=165.84 Aligned_cols=214 Identities=18% Similarity=0.129 Sum_probs=152.9
Q ss_pred EEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---CCcEeEEec
Q 023515 13 CVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---GCDGVCHTA 89 (281)
Q Consensus 13 lItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---~~d~Vih~a 89 (281)
+||||+|+||++++++|+++|++|++++|++++...+....+ ...+++++.+|++|.+++.++++ ++|++||+|
T Consensus 1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~a 77 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALG---GGAPVRTAALDITDEAAVDAFFAEAGPFDHVVITA 77 (230)
T ss_pred CeecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh---cCCceEEEEccCCCHHHHHHHHHhcCCCCEEEECC
Confidence 699999999999999999999999999998654333222211 12468899999999999988886 479999999
Q ss_pred ccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCC
Q 023515 90 SPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSE 164 (281)
Q Consensus 90 ~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 164 (281)
|.... ...+.++..+++|+.++.+++++.... +.+++|++||..++.+.+ ..
T Consensus 78 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~g~iv~~ss~~~~~~~~----------------------~~ 134 (230)
T PRK07041 78 ADTPGGPVRALPLAAAQAAMDSKFWGAYRVARAARIA-PGGSLTFVSGFAAVRPSA----------------------SG 134 (230)
T ss_pred CCCCCCChhhCCHHHHHHHHHHHHHHHHHHHhhhhhc-CCeEEEEECchhhcCCCC----------------------cc
Confidence 86322 123456788999999999999955543 567999999987754211 12
Q ss_pred chhhhhHHHHHHHHHHHHHhc-CCcEEEEcCCcccCCCCCCCCCc-cHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHH
Q 023515 165 LWYPLSKTLAEDAAWKFAKEK-SIDLVTINPAMVIGPLLQPTLNT-SAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQ 242 (281)
Q Consensus 165 ~~Y~~sK~~~e~~~~~~~~~~-g~~~~~irp~~v~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~ 242 (281)
..|+.+|.+.+.+++.++.+. +++++.++||.+.++........ ....+.......+ ...+..++|+|+++++
T Consensus 135 ~~Y~~sK~a~~~~~~~la~e~~~irv~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~dva~~~~~ 209 (230)
T PRK07041 135 VLQGAINAALEALARGLALELAPVRVNTVSPGLVDTPLWSKLAGDAREAMFAAAAERLP-----ARRVGQPEDVANAILF 209 (230)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhCceEEEEeecccccHHHHhhhccchHHHHHHHHhcCC-----CCCCcCHHHHHHHHHH
Confidence 459999999999999998775 68999999999977643211111 1112222222111 1124589999999999
Q ss_pred hhcCCCCCc-cEEEec
Q 023515 243 AFEVPSANG-RYCLVE 257 (281)
Q Consensus 243 ~~~~~~~~g-~~~~~~ 257 (281)
++......| .|++.+
T Consensus 210 l~~~~~~~G~~~~v~g 225 (230)
T PRK07041 210 LAANGFTTGSTVLVDG 225 (230)
T ss_pred HhcCCCcCCcEEEeCC
Confidence 998765545 566554
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-22 Score=166.51 Aligned_cols=221 Identities=14% Similarity=0.102 Sum_probs=151.3
Q ss_pred ccCCCeEEEeCCch--HHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 6 AAAGKVVCVTGASG--YIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
++++|+++||||++ +||+++++.|+++|++|++.+|+....+.++.+... .....++.+|++|+++++++++
T Consensus 3 ~l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~v~~~~~~~~ 79 (262)
T PRK07984 3 FLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQ---LGSDIVLPCDVAEDASIDAMFAELG 79 (262)
T ss_pred ccCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhc---cCCceEeecCCCCHHHHHHHHHHHH
Confidence 35689999999985 999999999999999999888863211222222111 1245678999999998888764
Q ss_pred ----CCcEeEEecccCCC----------CCCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCCCC
Q 023515 81 ----GCDGVCHTASPFYH----------DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTP 145 (281)
Q Consensus 81 ----~~d~Vih~a~~~~~----------~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~ 145 (281)
++|++|||||.... ...+.|+..+++|+.++..+.+++.+.+ ...++|++||.+...+.+
T Consensus 80 ~~~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~~~~~~~----- 154 (262)
T PRK07984 80 KVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIP----- 154 (262)
T ss_pred hhcCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCCCCCCCC-----
Confidence 57999999986321 1123456788999999999999887642 236899999975532110
Q ss_pred CeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCC
Q 023515 146 DVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT 222 (281)
Q Consensus 146 ~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~ 222 (281)
....|+.||.+.+.+++.++.++ |+++.+|.||.+.++.... ...............
T Consensus 155 -----------------~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~-~~~~~~~~~~~~~~~-- 214 (262)
T PRK07984 155 -----------------NYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASG-IKDFRKMLAHCEAVT-- 214 (262)
T ss_pred -----------------CcchhHHHHHHHHHHHHHHHHHhcccCcEEeeeecCcccchHHhc-CCchHHHHHHHHHcC--
Confidence 12349999999999999998864 8999999999998763211 111111111111111
Q ss_pred CCCCCccceeHHHHHHHHHHhhcCCC--CCccEEEec
Q 023515 223 YPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVE 257 (281)
Q Consensus 223 ~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~ 257 (281)
+ ...+..++|++.++++++.... ..|..+..+
T Consensus 215 -p--~~r~~~pedva~~~~~L~s~~~~~itG~~i~vd 248 (262)
T PRK07984 215 -P--IRRTVTIEDVGNSAAFLCSDLSAGISGEVVHVD 248 (262)
T ss_pred -C--CcCCCCHHHHHHHHHHHcCcccccccCcEEEEC
Confidence 1 1236799999999999998643 356554443
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-22 Score=166.37 Aligned_cols=199 Identities=17% Similarity=0.141 Sum_probs=147.2
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----CCcE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----GCDG 84 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~d~ 84 (281)
||+|+||||+|+||.++++.|+++|++|++++|++++...+....... ...+++++++|+++++++.++++ .+|+
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~ 79 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRAR-GAVAVSTHELDILDTASHAAFLDSLPALPDI 79 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHh-cCCeEEEEecCCCChHHHHHHHHHHhhcCCE
Confidence 468999999999999999999999999999999875443322221111 12478999999999988887765 4699
Q ss_pred eEEecccCCCC-----CCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeecCCCCC
Q 023515 85 VCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSD 156 (281)
Q Consensus 85 Vih~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~ 156 (281)
|||+||..... ..+.+.+.+++|+.++.++++++.+.+ +.+++|++||..+..+.+
T Consensus 80 vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~---------------- 143 (243)
T PRK07102 80 VLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSVAGDRGRA---------------- 143 (243)
T ss_pred EEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecccccCCCC----------------
Confidence 99999863221 112234678999999999999987642 457899999976543211
Q ss_pred hhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeH
Q 023515 157 PEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNV 233 (281)
Q Consensus 157 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 233 (281)
....|+.+|.+.+.+++.++.+ .|+++++++||.++++..... .. + ....+.+
T Consensus 144 ------~~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~v~t~~~~~~-------------~~---~--~~~~~~~ 199 (243)
T PRK07102 144 ------SNYVYGSAKAALTAFLSGLRNRLFKSGVHVLTVKPGFVRTPMTAGL-------------KL---P--GPLTAQP 199 (243)
T ss_pred ------CCcccHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccChhhhcc-------------CC---C--ccccCCH
Confidence 1234999999999999988654 489999999999998642110 00 1 1125689
Q ss_pred HHHHHHHHHhhcCCC
Q 023515 234 KDVANAHIQAFEVPS 248 (281)
Q Consensus 234 ~D~a~~i~~~~~~~~ 248 (281)
+|+|+.++.+++++.
T Consensus 200 ~~~a~~i~~~~~~~~ 214 (243)
T PRK07102 200 EEVAKDIFRAIEKGK 214 (243)
T ss_pred HHHHHHHHHHHhCCC
Confidence 999999999999764
|
|
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-22 Score=166.03 Aligned_cols=211 Identities=14% Similarity=0.051 Sum_probs=148.6
Q ss_pred ccCCCeEEEeCC--chHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 6 AAAGKVVCVTGA--SGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 6 ~~~~~~ilItGa--tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
.+++|+++|||| +++||++++++|+++|++|+++.|.....+.+..+.... ....++++|++|++++.++++
T Consensus 3 ~l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~ 79 (260)
T PRK06997 3 FLAGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEF---GSDLVFPCDVASDEQIDALFASLG 79 (260)
T ss_pred ccCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhc---CCcceeeccCCCHHHHHHHHHHHH
Confidence 356899999996 689999999999999999998876432223333222111 123468899999998888775
Q ss_pred ----CCcEeEEecccCCC----------CCCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCCCC
Q 023515 81 ----GCDGVCHTASPFYH----------DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTP 145 (281)
Q Consensus 81 ----~~d~Vih~a~~~~~----------~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~ 145 (281)
++|++|||||.... ...+.|+..+++|+.++..+++++.+.+ +.+++|++||..+..+.+
T Consensus 80 ~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~iss~~~~~~~~----- 154 (260)
T PRK06997 80 QHWDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERVVP----- 154 (260)
T ss_pred HHhCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEeccccccCCC-----
Confidence 68999999986321 1234567889999999999999999864 236899999976543110
Q ss_pred CeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCC
Q 023515 146 DVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT 222 (281)
Q Consensus 146 ~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~ 222 (281)
....|+.+|++.+.+++.++.++ |++++.|.||.+.++.... ...............
T Consensus 155 -----------------~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~-~~~~~~~~~~~~~~~-- 214 (260)
T PRK06997 155 -----------------NYNTMGLAKASLEASVRYLAVSLGPKGIRANGISAGPIKTLAASG-IKDFGKILDFVESNA-- 214 (260)
T ss_pred -----------------CcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCccccchhcc-ccchhhHHHHHHhcC--
Confidence 12349999999999999998864 8999999999998764221 111111111121111
Q ss_pred CCCCCccceeHHHHHHHHHHhhcCC
Q 023515 223 YPNVTFGWVNVKDVANAHIQAFEVP 247 (281)
Q Consensus 223 ~~~~~~~~i~~~D~a~~i~~~~~~~ 247 (281)
+ ...+..++|+++++.+++...
T Consensus 215 -p--~~r~~~pedva~~~~~l~s~~ 236 (260)
T PRK06997 215 -P--LRRNVTIEEVGNVAAFLLSDL 236 (260)
T ss_pred -c--ccccCCHHHHHHHHHHHhCcc
Confidence 1 123678999999999999864
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-22 Score=166.32 Aligned_cols=209 Identities=15% Similarity=0.109 Sum_probs=142.6
Q ss_pred eEEEeCCchHHHHHHHHHHHHCCCEEEEEEcC-CCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------CC
Q 023515 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRD-PNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------GC 82 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~ 82 (281)
+++||||+|+||+++++.|+++|++|++++|+ .+..+.+............+.++++|++|.+++.++++ ++
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 80 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGGL 80 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCCc
Confidence 38999999999999999999999999999997 43333332222111111235568899999988877664 57
Q ss_pred cEeEEecccCCC-----CCCCccchhhhhHHH----HHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCC
Q 023515 83 DGVCHTASPFYH-----DAKDPQVELLDPAVK----GTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (281)
Q Consensus 83 d~Vih~a~~~~~-----~~~~~~~~~~~~n~~----~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~ 153 (281)
|+|||+||.... ...+.++..+++|+. ++.+++..+++. +.++||++||..++.+.+
T Consensus 81 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~ii~~ss~~~~~~~~------------- 146 (251)
T PRK07069 81 SVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRAS-QPASIVNISSVAAFKAEP------------- 146 (251)
T ss_pred cEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhc-CCcEEEEecChhhccCCC-------------
Confidence 999999986332 122345577889998 555555555554 567999999987765221
Q ss_pred CCChhhhccCCchhhhhHHHHHHHHHHHHHhc-----CCcEEEEcCCcccCCCCCCCCCc--cHHHHHHHHhCCCCCCCC
Q 023515 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK-----SIDLVTINPAMVIGPLLQPTLNT--SAAAVLSLIKGAQTYPNV 226 (281)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----g~~~~~irp~~v~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 226 (281)
....|+.+|.+.+.+++.++.+. +++++.++||.+.+|...+.... ....+.....+. .
T Consensus 147 ---------~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~-----~ 212 (251)
T PRK07069 147 ---------DYTAYNASKAAVASLTKSIALDCARRGLDVRCNSIHPTFIRTGIVDPIFQRLGEEEATRKLARGV-----P 212 (251)
T ss_pred ---------CCchhHHHHHHHHHHHHHHHHHhcccCCcEEEEEEeecccCCcchhHHhhhccchhHHHHHhccC-----C
Confidence 12349999999999999887753 48899999999998864321110 011112222211 1
Q ss_pred CccceeHHHHHHHHHHhhcCC
Q 023515 227 TFGWVNVKDVANAHIQAFEVP 247 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~ 247 (281)
...+.+++|+|+++++++...
T Consensus 213 ~~~~~~~~~va~~~~~l~~~~ 233 (251)
T PRK07069 213 LGRLGEPDDVAHAVLYLASDE 233 (251)
T ss_pred CCCCcCHHHHHHHHHHHcCcc
Confidence 223568999999999988754
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-22 Score=184.00 Aligned_cols=216 Identities=18% Similarity=0.153 Sum_probs=157.4
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------- 80 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------- 80 (281)
.+|+++||||+|+||++++++|+++|++|++++|+.++.+.+.... ..++..+++|++|++++.++++
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 342 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEAL-----GDEHLSVQADITDEAAVESAFAQIQARWG 342 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceeEEEccCCCHHHHHHHHHHHHHHcC
Confidence 5789999999999999999999999999999999865444333221 1356778999999988887765
Q ss_pred CCcEeEEecccCCC------CCCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCCCCCeeeecCC
Q 023515 81 GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (281)
Q Consensus 81 ~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~ 153 (281)
++|++|||||.... ...+.|+..+++|+.++.++++++.+.+ +.++||++||..+..+.+
T Consensus 343 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------- 409 (520)
T PRK06484 343 RLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLLALP------------- 409 (520)
T ss_pred CCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcCCCC-------------
Confidence 58999999986421 1234567889999999999999999864 336899999987765221
Q ss_pred CCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccc
Q 023515 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGW 230 (281)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (281)
....|+.+|++.+.+++.++.++ |+++++|+||.+.++....................+ ...+
T Consensus 410 ---------~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 475 (520)
T PRK06484 410 ---------PRNAYCASKAAVTMLSRSLACEWAPAGIRVNTVAPGYIETPAVLALKASGRADFDSIRRRIP-----LGRL 475 (520)
T ss_pred ---------CCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCchhhhhccccHHHHHHHHhcCC-----CCCC
Confidence 12349999999999999998764 799999999999987533211111111222222111 1235
Q ss_pred eeHHHHHHHHHHhhcCCC--CCccEEE
Q 023515 231 VNVKDVANAHIQAFEVPS--ANGRYCL 255 (281)
Q Consensus 231 i~~~D~a~~i~~~~~~~~--~~g~~~~ 255 (281)
..++|+|+++++++.... ..|..+.
T Consensus 476 ~~~~dia~~~~~l~s~~~~~~~G~~i~ 502 (520)
T PRK06484 476 GDPEEVAEAIAFLASPAASYVNGATLT 502 (520)
T ss_pred cCHHHHHHHHHHHhCccccCccCcEEE
Confidence 789999999999997543 3464433
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-22 Score=165.97 Aligned_cols=220 Identities=15% Similarity=0.048 Sum_probs=152.1
Q ss_pred cCCCeEEEeCCch--HHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 7 AAGKVVCVTGASG--YIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 7 ~~~~~ilItGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
+++|+++||||++ +||+++++.|+++|++|++.+|+....+.+.++.... ....++++|++|+++++++++
T Consensus 6 ~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~---g~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (260)
T PRK06603 6 LQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEI---GCNFVSELDVTNPKSISNLFDDIKE 82 (260)
T ss_pred cCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhc---CCceEEEccCCCHHHHHHHHHHHHH
Confidence 4578999999997 8999999999999999999887632122222222111 122457899999988887775
Q ss_pred ---CCcEeEEecccCC---------CCCCCccchhhhhHHHHHHHHHHHhhhCCC-ccEEEEeccceeeecCCCCCCCCe
Q 023515 81 ---GCDGVCHTASPFY---------HDAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAVLNTGKPRTPDV 147 (281)
Q Consensus 81 ---~~d~Vih~a~~~~---------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~ 147 (281)
++|++||||+... +...+.|+..+++|+.++..+++.+.+.+. .+++|++||..+..+.+
T Consensus 83 ~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~~~~------- 155 (260)
T PRK06603 83 KWGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGAEKVIP------- 155 (260)
T ss_pred HcCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCccccCCC-------
Confidence 5899999998632 112345778999999999999999887542 36899999976543111
Q ss_pred eeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCC
Q 023515 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP 224 (281)
Q Consensus 148 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (281)
....|+.||++.+.+++.++.++ |++++++.||.+.++..... ..............|
T Consensus 156 ---------------~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~-~~~~~~~~~~~~~~p--- 216 (260)
T PRK06603 156 ---------------NYNVMGVAKAALEASVKYLANDMGENNIRVNAISAGPIKTLASSAI-GDFSTMLKSHAATAP--- 216 (260)
T ss_pred ---------------cccchhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcCcchhhhcC-CCcHHHHHHHHhcCC---
Confidence 12349999999999999998764 79999999999987742211 111111122221111
Q ss_pred CCCccceeHHHHHHHHHHhhcCCC--CCccEEEec
Q 023515 225 NVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVE 257 (281)
Q Consensus 225 ~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~ 257 (281)
...+..++|+|+++++++.... ..|..+..+
T Consensus 217 --~~r~~~pedva~~~~~L~s~~~~~itG~~i~vd 249 (260)
T PRK06603 217 --LKRNTTQEDVGGAAVYLFSELSKGVTGEIHYVD 249 (260)
T ss_pred --cCCCCCHHHHHHHHHHHhCcccccCcceEEEeC
Confidence 1236789999999999998543 246544443
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.9e-22 Score=167.20 Aligned_cols=237 Identities=17% Similarity=0.131 Sum_probs=153.4
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------CC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------GC 82 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------~~ 82 (281)
+|+++|||| |+||++++++|. +|++|++++|+.++...+....... ..++.++++|++|.+++.++++ ++
T Consensus 2 ~k~~lItGa-~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~i 77 (275)
T PRK06940 2 KEVVVVIGA-GGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLREA--GFDVSTQEVDVSSRESVKALAATAQTLGPV 77 (275)
T ss_pred CCEEEEECC-ChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEeecCCHHHHHHHHHHHHhcCCC
Confidence 678999998 699999999996 8999999999765443332222111 2468889999999988877764 58
Q ss_pred cEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCCCCCe---eeecCCCCC--
Q 023515 83 DGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDV---VVDETWFSD-- 156 (281)
Q Consensus 83 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~---~~~e~~~~~-- 156 (281)
|++|||||.... ...++..+++|+.++.++++++.+.+ ..+++|++||..+............ .++.++...
T Consensus 78 d~li~nAG~~~~--~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (275)
T PRK06940 78 TGLVHTAGVSPS--QASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQSGHRLPALTAEQERALATTPTEELLSLP 155 (275)
T ss_pred CEEEECCCcCCc--hhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecccccCcccchhhhccccccccccccccc
Confidence 999999997532 34577999999999999999998753 2246788888766542100000000 011111000
Q ss_pred ---hhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCc-cHHHHHHHHhCCCCCCCCCcc
Q 023515 157 ---PEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNT-SAAAVLSLIKGAQTYPNVTFG 229 (281)
Q Consensus 157 ---~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 229 (281)
+.........|+.||++.+.+++.++.++ |+++++|.||.+.++........ .......+.... + ...
T Consensus 156 ~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gIrvn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~---p--~~r 230 (275)
T PRK06940 156 FLQPDAIEDSLHAYQIAKRANALRVMAEAVKWGERGARINSISPGIISTPLAQDELNGPRGDGYRNMFAKS---P--AGR 230 (275)
T ss_pred cccccccCCccchhHHHHHHHHHHHHHHHHHHccCCeEEEEeccCcCcCccchhhhcCCchHHHHHHhhhC---C--ccc
Confidence 00000012459999999999999887764 79999999999998753211111 111112221111 1 123
Q ss_pred ceeHHHHHHHHHHhhcCCCC--CccEEEe
Q 023515 230 WVNVKDVANAHIQAFEVPSA--NGRYCLV 256 (281)
Q Consensus 230 ~i~~~D~a~~i~~~~~~~~~--~g~~~~~ 256 (281)
+..++|+|+++++++..... .|..+..
T Consensus 231 ~~~peeia~~~~fL~s~~~~~itG~~i~v 259 (275)
T PRK06940 231 PGTPDEIAALAEFLMGPRGSFITGSDFLV 259 (275)
T ss_pred CCCHHHHHHHHHHHcCcccCcccCceEEE
Confidence 67999999999999975432 5544433
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.9e-22 Score=166.08 Aligned_cols=222 Identities=13% Similarity=0.076 Sum_probs=153.4
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC-cchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
.+++|+++||||+|+||++++++|+++|++|+++.|+..+ ...+...... ...++.++.+|++|.+++.++++
T Consensus 4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~i~~~~~~~~~ 81 (261)
T PRK08936 4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKK--AGGEAIAVKGDVTVESDVVNLIQTAVK 81 (261)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHH--cCCeEEEEEecCCCHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999988885432 2222221111 12467889999999988777664
Q ss_pred ---CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---C-ccEEEEeccceeeecCCCCCCCCee
Q 023515 81 ---GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---S-IKRVVLTSSMAAVLNTGKPRTPDVV 148 (281)
Q Consensus 81 ---~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~-~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (281)
++|++||+||.... ...+.++..+++|+.++..+++.+.+.+ + .+++|++||..+..+.+
T Consensus 82 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~~~~~-------- 153 (261)
T PRK08936 82 EFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQIPWP-------- 153 (261)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEccccccCCCC--------
Confidence 58999999986322 1224466789999999988777665432 2 36899999975543111
Q ss_pred eecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCC
Q 023515 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (281)
Q Consensus 149 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (281)
....|+.+|.+.+.+.+.++.++ |+++++++||.+.+|....... ............+
T Consensus 154 --------------~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~-~~~~~~~~~~~~~---- 214 (261)
T PRK08936 154 --------------LFVHYAASKGGVKLMTETLAMEYAPKGIRVNNIGPGAINTPINAEKFA-DPKQRADVESMIP---- 214 (261)
T ss_pred --------------CCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECcCCCCccccccC-CHHHHHHHHhcCC----
Confidence 12359999999999998887654 8999999999999886432211 1121222211111
Q ss_pred CCccceeHHHHHHHHHHhhcCCC--CCccEEEec
Q 023515 226 VTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVE 257 (281)
Q Consensus 226 ~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~ 257 (281)
...+..++|+++++.+++.... ..|..+..+
T Consensus 215 -~~~~~~~~~va~~~~~l~s~~~~~~~G~~i~~d 247 (261)
T PRK08936 215 -MGYIGKPEEIAAVAAWLASSEASYVTGITLFAD 247 (261)
T ss_pred -CCCCcCHHHHHHHHHHHcCcccCCccCcEEEEC
Confidence 2236789999999999997543 356554444
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.4e-23 Score=191.09 Aligned_cols=223 Identities=21% Similarity=0.164 Sum_probs=158.5
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++++|+||||+|+||+++++.|+++|++|++++|+.+....+....... .++.++.+|++|.+++.++++
T Consensus 420 l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~ 496 (681)
T PRK08324 420 LAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAF 496 (681)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 45789999999999999999999999999999999875543332221111 368899999999988877765
Q ss_pred -CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---Cc-cEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SI-KRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 -~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~-~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|+||||||.... ...+.++..+++|+.++.++++++.+.+ +. ++||++||..++.+.+
T Consensus 497 g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~~~~~~~---------- 566 (681)
T PRK08324 497 GGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKNAVNPGP---------- 566 (681)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCccccCCCC----------
Confidence 68999999986322 2234567889999999999988887532 22 6899999987765221
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCccc-CCCCCCCCCccHHHHHHHHhCCC-----
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVI-GPLLQPTLNTSAAAVLSLIKGAQ----- 221 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~-g~~~~~~~~~~~~~~~~~~~~~~----- 221 (281)
....|+.+|.+.+.+++.++.++ |+++++++|+.+| ++....... ........+.+
T Consensus 567 ------------~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~Pg~v~~~t~~~~~~~---~~~~~~~~g~~~~~~~ 631 (681)
T PRK08324 567 ------------NFGAYGAAKAAELHLVRQLALELGPDGIRVNGVNPDAVVRGSGIWTGEW---IEARAAAYGLSEEELE 631 (681)
T ss_pred ------------CcHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCceeecCCccccchh---hhhhhhhccCChHHHH
Confidence 12459999999999999998765 6999999999997 543211100 00000001110
Q ss_pred ---CCCCCCccceeHHHHHHHHHHhhc--CCCCCc-cEEEec
Q 023515 222 ---TYPNVTFGWVNVKDVANAHIQAFE--VPSANG-RYCLVE 257 (281)
Q Consensus 222 ---~~~~~~~~~i~~~D~a~~i~~~~~--~~~~~g-~~~~~~ 257 (281)
..+...+.+++++|+|+++++++. .....| ++++.+
T Consensus 632 ~~~~~~~~l~~~v~~~DvA~a~~~l~s~~~~~~tG~~i~vdg 673 (681)
T PRK08324 632 EFYRARNLLKREVTPEDVAEAVVFLASGLLSKTTGAIITVDG 673 (681)
T ss_pred HHHHhcCCcCCccCHHHHHHHHHHHhCccccCCcCCEEEECC
Confidence 012345679999999999999985 333345 566654
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-22 Score=166.82 Aligned_cols=223 Identities=16% Similarity=0.071 Sum_probs=154.2
Q ss_pred cCCCeEEEeCCc--hHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 7 AAGKVVCVTGAS--GYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 7 ~~~~~ilItGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
|++|+++||||+ ++||++++++|+++|++|+++.|+....+.+.++.... ....++++|++|+++++++++
T Consensus 8 ~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~---~~~~~~~~Dl~~~~~v~~~~~~~~~ 84 (272)
T PRK08159 8 MAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAEL---GAFVAGHCDVTDEASIDAVFETLEK 84 (272)
T ss_pred ccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhc---CCceEEecCCCCHHHHHHHHHHHHH
Confidence 457999999997 89999999999999999998887632222333222111 235578999999988887764
Q ss_pred ---CCcEeEEecccCCC---------CCCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCCCCCe
Q 023515 81 ---GCDGVCHTASPFYH---------DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDV 147 (281)
Q Consensus 81 ---~~d~Vih~a~~~~~---------~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (281)
++|++|||||.... ...+.|+..+++|+.++.++++++.+.+ +.+++|++||..+..+.+
T Consensus 85 ~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~~~p------- 157 (272)
T PRK08159 85 KWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYGAEKVMP------- 157 (272)
T ss_pred hcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEeccccccCCC-------
Confidence 58999999986421 1234577899999999999999998864 236899999975432110
Q ss_pred eeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCC
Q 023515 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP 224 (281)
Q Consensus 148 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (281)
....|+.+|++.+.+++.++.++ |+++++|.||.+.++..... ... ........... +
T Consensus 158 ---------------~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~-~~~-~~~~~~~~~~~--p 218 (272)
T PRK08159 158 ---------------HYNVMGVAKAALEASVKYLAVDLGPKNIRVNAISAGPIKTLAASGI-GDF-RYILKWNEYNA--P 218 (272)
T ss_pred ---------------cchhhhhHHHHHHHHHHHHHHHhcccCeEEEEeecCCcCCHHHhcC-Ccc-hHHHHHHHhCC--c
Confidence 12349999999999999998864 79999999999987532211 100 11111111111 1
Q ss_pred CCCccceeHHHHHHHHHHhhcCCC--CCccEEEecCCC
Q 023515 225 NVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVERVS 260 (281)
Q Consensus 225 ~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~~~~ 260 (281)
...+..++|+|+++++++.... ..|..+..++..
T Consensus 219 --~~r~~~peevA~~~~~L~s~~~~~itG~~i~vdgG~ 254 (272)
T PRK08159 219 --LRRTVTIEEVGDSALYLLSDLSRGVTGEVHHVDSGY 254 (272)
T ss_pred --ccccCCHHHHHHHHHHHhCccccCccceEEEECCCc
Confidence 1235789999999999997543 356555554333
|
|
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.5e-22 Score=164.25 Aligned_cols=214 Identities=17% Similarity=0.116 Sum_probs=148.6
Q ss_pred cCCCeEEEeCCch--HHHHHHHHHHHHCCCEEEEEEcCCCC---------cch--hhhhhhccCCCCcEEEEEcCCCCcC
Q 023515 7 AAGKVVCVTGASG--YIASWLVKLLLSRGYTVKASVRDPND---------PKK--TRHLLALDGASERLQLFKANLLEEG 73 (281)
Q Consensus 7 ~~~~~ilItGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~---------~~~--~~~~~~~~~~~~~~~~~~~D~~~~~ 73 (281)
+++++|||||||| +||.+++++|+++|++|++++|++.+ ... +..... ....++.++.+|+++.+
T Consensus 3 l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~ 80 (256)
T PRK12748 3 LMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIE--SYGVRCEHMEIDLSQPY 80 (256)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHH--hcCCeEEEEECCCCCHH
Confidence 4678999999995 79999999999999999999987321 111 111111 11246889999999988
Q ss_pred cHHHHhc-------CCcEeEEecccCCCC-----CCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeec
Q 023515 74 SFDSIVD-------GCDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLN 138 (281)
Q Consensus 74 ~~~~~~~-------~~d~Vih~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~ 138 (281)
++..+++ ++|+|||+||..... ..+.++..+++|+.++..+++++.+.+ +.+++|++||..++.+
T Consensus 81 ~~~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~ 160 (256)
T PRK12748 81 APNRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIINLTSGQSLGP 160 (256)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCeEEEEECCccccCC
Confidence 8776664 579999999863221 123356778999999999999987642 3468999999766531
Q ss_pred CCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHH
Q 023515 139 TGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLS 215 (281)
Q Consensus 139 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~ 215 (281)
.+ ....|+.+|++.+.+++.++.+ .+++++.++||.+.++.... . ...
T Consensus 161 ~~----------------------~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~~~t~~~~~------~-~~~ 211 (256)
T PRK12748 161 MP----------------------DELAYAATKGAIEAFTKSLAPELAEKGITVNAVNPGPTDTGWITE------E-LKH 211 (256)
T ss_pred CC----------------------CchHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEeCcccCCCCCh------h-HHH
Confidence 11 1234999999999999988775 38999999999988765321 1 111
Q ss_pred HHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCccEEE
Q 023515 216 LIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCL 255 (281)
Q Consensus 216 ~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~ 255 (281)
..... .+ ...+..++|+|+++.+++.... ..|.++.
T Consensus 212 ~~~~~--~~--~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~ 249 (256)
T PRK12748 212 HLVPK--FP--QGRVGEPVDAARLIAFLVSEEAKWITGQVIH 249 (256)
T ss_pred hhhcc--CC--CCCCcCHHHHHHHHHHHhCcccccccCCEEE
Confidence 11111 11 1224578999999999887643 2354443
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.4e-22 Score=163.60 Aligned_cols=202 Identities=16% Similarity=0.125 Sum_probs=144.4
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCc--CcHHHHh----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEE--GSFDSIV---- 79 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~--~~~~~~~---- 79 (281)
.|++++++||||+|+||++++++|+++|++|++++|+.++...+........ ...+.++.+|+.+. +.+..++
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~i~ 81 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAG-HPEPFAIRFDLMSAEEKEFEQFAATIA 81 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcC-CCCcceEEeeecccchHHHHHHHHHHH
Confidence 3568999999999999999999999999999999998765444332221111 13467788999753 3344332
Q ss_pred ----cCCcEeEEecccCCC------CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCC
Q 023515 80 ----DGCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPD 146 (281)
Q Consensus 80 ----~~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~ 146 (281)
.++|+|||+||.... ...+.+++.+++|+.++.++++++.+.+ +..++|++||..+..+.+
T Consensus 82 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~~~------ 155 (239)
T PRK08703 82 EATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFVGESHGETPKA------ 155 (239)
T ss_pred HHhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCEEEEEeccccccCCC------
Confidence 367999999996321 1123345678999999999999987742 346899999965542110
Q ss_pred eeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc----CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCC
Q 023515 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK----SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT 222 (281)
Q Consensus 147 ~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~ 222 (281)
....|+.+|++.+.+++.++.++ ++++++++||.+++|...... .+
T Consensus 156 ----------------~~~~Y~~sKaa~~~~~~~la~e~~~~~~i~v~~v~pG~v~t~~~~~~~-----------~~--- 205 (239)
T PRK08703 156 ----------------YWGGFGASKAALNYLCKVAADEWERFGNLRANVLVPGPINSPQRIKSH-----------PG--- 205 (239)
T ss_pred ----------------CccchHHhHHHHHHHHHHHHHHhccCCCeEEEEEecCcccCccccccC-----------CC---
Confidence 12349999999999999988865 589999999999998632110 00
Q ss_pred CCCCCccceeHHHHHHHHHHhhcC
Q 023515 223 YPNVTFGWVNVKDVANAHIQAFEV 246 (281)
Q Consensus 223 ~~~~~~~~i~~~D~a~~i~~~~~~ 246 (281)
.....+..++|++..+++++..
T Consensus 206 --~~~~~~~~~~~~~~~~~~~~~~ 227 (239)
T PRK08703 206 --EAKSERKSYGDVLPAFVWWASA 227 (239)
T ss_pred --CCccccCCHHHHHHHHHHHhCc
Confidence 1112356999999999999984
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.4e-22 Score=163.27 Aligned_cols=209 Identities=13% Similarity=0.101 Sum_probs=146.7
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCC-CCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDP-NDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
|++|+++||||+|+||++++++|+++|++|++..++. .......... ......+..+.+|++|.+++.++++
T Consensus 1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 78 (246)
T PRK12938 1 MSQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQ--KALGFDFIASEGNVGDWDSTKAAFDKVKAE 78 (246)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHH--HhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 3478999999999999999999999999988865432 2221111111 1112357788999999988877664
Q ss_pred --CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 --~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|+||||||.... ...+.++..+++|+.++.++++++.+.+ +.+++|++||..+..+.+
T Consensus 79 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~---------- 148 (246)
T PRK12938 79 VGEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQKGQF---------- 148 (246)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEechhccCCCC----------
Confidence 68999999986432 2234467889999999888888776531 456899999976543211
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
....|+.+|.+.+.+++.++++ .|+++++++||.+.+|..... ....+....... ..
T Consensus 149 ------------~~~~y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~~~t~~~~~~---~~~~~~~~~~~~-----~~ 208 (246)
T PRK12938 149 ------------GQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKAI---RPDVLEKIVATI-----PV 208 (246)
T ss_pred ------------CChhHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEecccCCchhhhc---ChHHHHHHHhcC-----Cc
Confidence 1234999999999999888765 489999999999998764321 112222222211 12
Q ss_pred ccceeHHHHHHHHHHhhcCC
Q 023515 228 FGWVNVKDVANAHIQAFEVP 247 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~ 247 (281)
..+..++|++.++++++...
T Consensus 209 ~~~~~~~~v~~~~~~l~~~~ 228 (246)
T PRK12938 209 RRLGSPDEIGSIVAWLASEE 228 (246)
T ss_pred cCCcCHHHHHHHHHHHcCcc
Confidence 33568999999999998754
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.5e-22 Score=165.50 Aligned_cols=217 Identities=14% Similarity=0.047 Sum_probs=148.0
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------CC
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------GC 82 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~ 82 (281)
|+++||||+|+||++++++|+++|++|++++|++++...+....... .++.++++|++|+++++++++ ++
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~i 77 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEY---GEVYAVKADLSDKDDLKNLVKEAWELLGGI 77 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc---CCceEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence 47999999999999999999999999999999865443332222111 357889999999988887764 68
Q ss_pred cEeEEecccCC-------CCCCCccchhhhhHHHHHHHHHHHhhhC----CCccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 83 DGVCHTASPFY-------HDAKDPQVELLDPAVKGTLNVLNSCAKF----PSIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 83 d~Vih~a~~~~-------~~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
|+||||||... +...+.+...+++|+.++..+...+.+. .+.++||++||..+..+.+
T Consensus 78 d~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~~~~~~~~----------- 146 (259)
T PRK08340 78 DALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSVSVKEPMP----------- 146 (259)
T ss_pred CEEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCcccCCCCC-----------
Confidence 99999998632 1112234456778888877776655432 1346899999986643110
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCC--------ccHHHH-HHHHhC
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLN--------TSAAAV-LSLIKG 219 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~--------~~~~~~-~~~~~~ 219 (281)
....|+.+|.+.+.+++.++.++ |++++.+.||.+.+|....... ...... ......
T Consensus 147 -----------~~~~y~~sKaa~~~~~~~la~e~~~~gI~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (259)
T PRK08340 147 -----------PLVLADVTRAGLVQLAKGVSRTYGGKGIRAYTVLLGSFDTPGARENLARIAEERGVSFEETWEREVLER 215 (259)
T ss_pred -----------CchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeccCcccCccHHHHHHhhhhccCCchHHHHHHHHhcc
Confidence 12359999999999999999875 7999999999998875321000 000001 111111
Q ss_pred CCCCCCCCccceeHHHHHHHHHHhhcCCC--CCccEEEe
Q 023515 220 AQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLV 256 (281)
Q Consensus 220 ~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~ 256 (281)
.+ ...+..++|+|+++.+++.... ..|+.+..
T Consensus 216 ---~p--~~r~~~p~dva~~~~fL~s~~~~~itG~~i~v 249 (259)
T PRK08340 216 ---TP--LKRTGRWEELGSLIAFLLSENAEYMLGSTIVF 249 (259)
T ss_pred ---CC--ccCCCCHHHHHHHHHHHcCcccccccCceEee
Confidence 11 2236789999999999998643 35654444
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.8e-22 Score=184.82 Aligned_cols=225 Identities=18% Similarity=0.103 Sum_probs=154.1
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++|++|||||+|+||++++++|+++|++|++++|+.+....+............+..+++|++|.+++.++++
T Consensus 412 l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~~ 491 (676)
T TIGR02632 412 LARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALAY 491 (676)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence 56899999999999999999999999999999999865443332222111112357789999999998888776
Q ss_pred -CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---C-ccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---S-IKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 -~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~-~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|+||||||.... ...+.|+..+++|+.+...+++.+.+.+ + ..++|++||..++++.+
T Consensus 492 g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a~~~~~---------- 561 (676)
T TIGR02632 492 GGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNAVYAGK---------- 561 (676)
T ss_pred CCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhhcCCCC----------
Confidence 68999999996331 1223466888999999988887766532 2 35899999987665221
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccC-CCCCCCCCc---------cHHHHHHHH
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIG-PLLQPTLNT---------SAAAVLSLI 217 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g-~~~~~~~~~---------~~~~~~~~~ 217 (281)
....|+.+|.+.+.+++.++.+. |++++.++|+.|+. +........ .........
T Consensus 562 ------------~~~aY~aSKaA~~~l~r~lA~el~~~gIrVn~V~Pg~V~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (676)
T TIGR02632 562 ------------NASAYSAAKAAEAHLARCLAAEGGTYGIRVNTVNPDAVLQGSGIWDGEWREERAAAYGIPADELEEHY 629 (676)
T ss_pred ------------CCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEECCceecCcccccccchhhhhhcccCChHHHHHHH
Confidence 12459999999999999998864 79999999999873 221110000 000001111
Q ss_pred hCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCccE-EEec
Q 023515 218 KGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRY-CLVE 257 (281)
Q Consensus 218 ~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~-~~~~ 257 (281)
.. ......+++++|+|+++.+++.... ..|.+ ++.|
T Consensus 630 ~~----r~~l~r~v~peDVA~av~~L~s~~~~~~TG~~i~vDG 668 (676)
T TIGR02632 630 AK----RTLLKRHIFPADIAEAVFFLASSKSEKTTGCIITVDG 668 (676)
T ss_pred Hh----cCCcCCCcCHHHHHHHHHHHhCCcccCCcCcEEEECC
Confidence 11 1123457899999999999987532 34644 4433
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-21 Score=162.67 Aligned_cols=199 Identities=13% Similarity=0.124 Sum_probs=141.7
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCC-cchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPND-PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++|+||||+|+||++++++|+++| ++|++++|++++ .+.+.+...... ..+++++++|++|.+++.++++
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~-~~~v~~~~~D~~~~~~~~~~~~~~~~~ 85 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAG-ASSVEVIDFDALDTDSHPKVIDAAFAG 85 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcC-CCceEEEEecCCChHHHHHHHHHHHhc
Confidence 46889999999999999999999995 999999998764 333322221111 2368999999999887665554
Q ss_pred -CCcEeEEecccCCCCC---CCc--cchhhhhHHHHHHHHHHHhh----hCCCccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 -GCDGVCHTASPFYHDA---KDP--QVELLDPAVKGTLNVLNSCA----KFPSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 -~~d~Vih~a~~~~~~~---~~~--~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|++||++|...... .+. ..+.+++|+.++..+++.+. +. +.++||++||..++.+.+
T Consensus 86 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~-~~~~iv~isS~~g~~~~~---------- 154 (253)
T PRK07904 86 GDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQ-GFGQIIAMSSVAGERVRR---------- 154 (253)
T ss_pred CCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhc-CCceEEEEechhhcCCCC----------
Confidence 6999999998743211 111 12468999999988655444 43 567999999976543110
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
....|+.||++...+.+.++.+ +|+++++++||.+.++..... . . .
T Consensus 155 ------------~~~~Y~~sKaa~~~~~~~l~~el~~~~i~v~~v~Pg~v~t~~~~~~------------~-~------~ 203 (253)
T PRK07904 155 ------------SNFVYGSTKAGLDGFYLGLGEALREYGVRVLVVRPGQVRTRMSAHA------------K-E------A 203 (253)
T ss_pred ------------CCcchHHHHHHHHHHHHHHHHHHhhcCCEEEEEeeCceecchhccC------------C-C------C
Confidence 1234999999999888777554 589999999999987642110 0 0 0
Q ss_pred ccceeHHHHHHHHHHhhcCCCC
Q 023515 228 FGWVNVKDVANAHIQAFEVPSA 249 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~~ 249 (281)
...+.++|+|+.++..+++++.
T Consensus 204 ~~~~~~~~~A~~i~~~~~~~~~ 225 (253)
T PRK07904 204 PLTVDKEDVAKLAVTAVAKGKE 225 (253)
T ss_pred CCCCCHHHHHHHHHHHHHcCCC
Confidence 1246899999999999987654
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.7e-22 Score=162.96 Aligned_cols=217 Identities=16% Similarity=0.171 Sum_probs=151.2
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhh-ccCCCCcEEEEEcCCCCcCcHHHHhc-------
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLA-LDGASERLQLFKANLLEEGSFDSIVD------- 80 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~------- 80 (281)
+++++||||+|+||+++++.|+++|++|++++|+... ....... ......++.++++|+++.+.+.++++
T Consensus 2 ~k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 79 (245)
T PRK12824 2 KKIALVTGAKRGIGSAIARELLNDGYRVIATYFSGND--CAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEG 79 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcHH--HHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4689999999999999999999999999999998541 1111111 11112468899999999988777665
Q ss_pred CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhC---CCccEEEEeccceeeecCCCCCCCCeeeecC
Q 023515 81 GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (281)
Q Consensus 81 ~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~ 152 (281)
++|+|||+||... ....+.++..+++|+.++.++++++.+. .+.++||++||..++.+..
T Consensus 80 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~~~~------------ 147 (245)
T PRK12824 80 PVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQGYGRIINISSVNGLKGQF------------ 147 (245)
T ss_pred CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEECChhhccCCC------------
Confidence 5899999998632 2223446688899999999997766442 1567999999976653211
Q ss_pred CCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCcc
Q 023515 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG 229 (281)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (281)
....|+.+|++.+.+++.++.+ .|+++++++||.+.++...... ........... ....
T Consensus 148 ----------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~---~~~~~~~~~~~-----~~~~ 209 (245)
T PRK12824 148 ----------GQTNYSAAKAGMIGFTKALASEGARYGITVNCIAPGYIATPMVEQMG---PEVLQSIVNQI-----PMKR 209 (245)
T ss_pred ----------CChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEEcccCCcchhhcC---HHHHHHHHhcC-----CCCC
Confidence 1134999999999999988764 4899999999999887533211 12222222211 1233
Q ss_pred ceeHHHHHHHHHHhhcCCCC--Cc-cEEEec
Q 023515 230 WVNVKDVANAHIQAFEVPSA--NG-RYCLVE 257 (281)
Q Consensus 230 ~i~~~D~a~~i~~~~~~~~~--~g-~~~~~~ 257 (281)
+..++|+++++.+++..... .| .+++.+
T Consensus 210 ~~~~~~va~~~~~l~~~~~~~~~G~~~~~~~ 240 (245)
T PRK12824 210 LGTPEEIAAAVAFLVSEAAGFITGETISING 240 (245)
T ss_pred CCCHHHHHHHHHHHcCccccCccCcEEEECC
Confidence 66899999999999865432 34 555543
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.7e-22 Score=169.20 Aligned_cols=233 Identities=16% Similarity=0.135 Sum_probs=159.5
Q ss_pred hccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC-CcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN-DPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 5 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
..+++|+++||||+|+||++++++|+++|++|++.++... ..+.+...... ...++.++++|++|.+.+.++++
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~--~g~~~~~~~~Dv~d~~~~~~~~~~~~ 85 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRA--AGAKAVAVAGDISQRATADELVATAV 85 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHh--cCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 3467899999999999999999999999999999987543 22222222211 12468899999999988877765
Q ss_pred ---CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCCC----------ccEEEEeccceeeecCCCC
Q 023515 81 ---GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFPS----------IKRVVLTSSMAAVLNTGKP 142 (281)
Q Consensus 81 ---~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~----------~~~~v~~SS~~~~~~~~~~ 142 (281)
++|+||||||.... ...+.++..+++|+.++.++++++.+++. .+++|++||..+..+..
T Consensus 86 ~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-- 163 (306)
T PRK07792 86 GLGGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGLVGPV-- 163 (306)
T ss_pred HhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCcccccCCC--
Confidence 58999999997432 22345678899999999999998865321 24899999987654221
Q ss_pred CCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhC
Q 023515 143 RTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKG 219 (281)
Q Consensus 143 ~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~ 219 (281)
....|+.+|.+.+.+++.++.+ +|++++++.|+. .++......... ....
T Consensus 164 --------------------~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~i~Pg~-~t~~~~~~~~~~----~~~~-- 216 (306)
T PRK07792 164 --------------------GQANYGAAKAGITALTLSAARALGRYGVRANAICPRA-RTAMTADVFGDA----PDVE-- 216 (306)
T ss_pred --------------------CCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEECCCC-CCchhhhhcccc----chhh--
Confidence 1134999999999999988875 589999999983 322211000000 0000
Q ss_pred CCCCCCCCccceeHHHHHHHHHHhhcCCC--CCc-cEEEec-------------------CCCCHHHHHHHHHHhC
Q 023515 220 AQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE-------------------RVSHYSEIVNIIRELY 273 (281)
Q Consensus 220 ~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~-------------------~~~t~~e~~~~i~~~~ 273 (281)
.....++.++|++.++.+++.... ..| .|.+.+ .+.+..|+.+.+.+.+
T Consensus 217 -----~~~~~~~~pe~va~~v~~L~s~~~~~~tG~~~~v~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (306)
T PRK07792 217 -----AGGIDPLSPEHVVPLVQFLASPAAAEVNGQVFIVYGPMVTLVAAPVVERRFDADGDAWDPGELSATLRDYF 287 (306)
T ss_pred -----hhccCCCCHHHHHHHHHHHcCccccCCCCCEEEEcCCeEEEEeeeeecceecCCCCCCCHHHHHHHHHHHh
Confidence 012235689999999999886532 233 222211 3467888888887774
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.5e-22 Score=164.62 Aligned_cols=203 Identities=19% Similarity=0.127 Sum_probs=142.6
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--------
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------- 80 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------- 80 (281)
+++|+||||+|+||+++++.|+++|++|++++|+.++.+.+.. .++..+++|++|.+++.++++
T Consensus 2 ~k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~~~i~~~~~~ 73 (256)
T PRK08017 2 QKSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMNS--------LGFTGILLDLDDPESVERAADEVIALTDN 73 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHHh--------CCCeEEEeecCCHHHHHHHHHHHHHhcCC
Confidence 4689999999999999999999999999999998654332211 246788999999877666543
Q ss_pred CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHh----hhCCCccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSC----AKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 ~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
++|.+||+||.... ...+.++..+++|+.|+.++.+.+ ++. +.+++|++||..+..+.+
T Consensus 74 ~~~~ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~~~iv~~ss~~~~~~~~----------- 141 (256)
T PRK08017 74 RLYGLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPH-GEGRIVMTSSVMGLISTP----------- 141 (256)
T ss_pred CCeEEEECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhc-CCCEEEEEcCcccccCCC-----------
Confidence 46899999985321 122345578999999998875444 444 567899999975543211
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHH---hcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCC--CCC
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAK---EKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY--PNV 226 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~---~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 226 (281)
....|+.+|.+.|.+.+.++. ..++++++++||.+.++....... .....+.. +..
T Consensus 142 -----------~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~--------~~~~~~~~~~~~~ 202 (256)
T PRK08017 142 -----------GRGAYAASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFTDNVNQ--------TQSDKPVENPGIA 202 (256)
T ss_pred -----------CccHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCcccchhhcccc--------hhhccchhhhHHH
Confidence 124599999999998876644 358999999999887654221100 00000101 122
Q ss_pred CccceeHHHHHHHHHHhhcCCCCC
Q 023515 227 TFGWVNVKDVANAHIQAFEVPSAN 250 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~~~ 250 (281)
.+.+++++|+++++..++++++..
T Consensus 203 ~~~~~~~~d~a~~~~~~~~~~~~~ 226 (256)
T PRK08017 203 ARFTLGPEAVVPKLRHALESPKPK 226 (256)
T ss_pred hhcCCCHHHHHHHHHHHHhCCCCC
Confidence 345799999999999999877653
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-22 Score=171.52 Aligned_cols=238 Identities=18% Similarity=0.106 Sum_probs=158.3
Q ss_pred hhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 4 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
++.+++|+++||||+++||++++++|+++|++|++++|+.++.+.............++.++++|+.|.++++++++
T Consensus 9 ~~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~ 88 (313)
T PRK05854 9 VPDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLR 88 (313)
T ss_pred CcccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHH
Confidence 45677999999999999999999999999999999999876544432222111112468899999999988877764
Q ss_pred ----CCcEeEEecccCCC----CCCCccchhhhhHHHHHHHHHHHhhhCC--CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 ----GCDGVCHTASPFYH----DAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 ----~~d~Vih~a~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|++|||||.... ...+.++..+++|+.++..+++.+.+.+ +..++|++||.....+.. ....+.
T Consensus 89 ~~~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~~~riv~vsS~~~~~~~~----~~~~~~ 164 (313)
T PRK05854 89 AEGRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAGRARVTSQSSIAARRGAI----NWDDLN 164 (313)
T ss_pred HhCCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhCCCCeEEEechhhcCCCc----Cccccc
Confidence 58999999996332 2345677899999999999999988642 346899999986654211 111122
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh-----cCCcEEEEcCCcccCCCCCCCC--C-ccHHHHHHHHhCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE-----KSIDLVTINPAMVIGPLLQPTL--N-TSAAAVLSLIKGAQT 222 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~g~~~~~irp~~v~g~~~~~~~--~-~~~~~~~~~~~~~~~ 222 (281)
++.... ....|+.||.+.+.++++++++ .|++++++.||.+.++...... . .....+........
T Consensus 165 ~~~~~~------~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~- 237 (313)
T PRK05854 165 WERSYA------GMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLAHPGVAPTNLLAARPEVGRDKDTLMVRLIRSLS- 237 (313)
T ss_pred ccccCc------chhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecceeccCccccccccccchhHHHHHHHHHHh-
Confidence 222111 1245999999999999999764 3799999999999876532110 0 00111111111000
Q ss_pred CCCCCccceeHHHHHHHHHHhhcCCCC-CccEE
Q 023515 223 YPNVTFGWVNVKDVANAHIQAFEVPSA-NGRYC 254 (281)
Q Consensus 223 ~~~~~~~~i~~~D~a~~i~~~~~~~~~-~g~~~ 254 (281)
.. ..-+-.+++-|...+.++..+.. .|.|.
T Consensus 238 -~~-~~~~~~~~~ga~~~l~~a~~~~~~~g~~~ 268 (313)
T PRK05854 238 -AR-GFLVGTVESAILPALYAATSPDAEGGAFY 268 (313)
T ss_pred -hc-ccccCCHHHHHHHhhheeeCCCCCCCcEE
Confidence 00 01123778888888877765443 45444
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.9e-22 Score=165.64 Aligned_cols=204 Identities=18% Similarity=0.149 Sum_probs=149.7
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++++++||||+|+||++++++|+++|++|++++|+.++...+..... ...++.++.+|++|.+++.++++
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 79 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLP---YPGRHRWVVADLTSEAGREAVLARAREMG 79 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHh---cCCceEEEEccCCCHHHHHHHHHHHHhcC
Confidence 568899999999999999999999999999999998654443332221 12478899999999988777654
Q ss_pred CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeecC
Q 023515 81 GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (281)
Q Consensus 81 ~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~ 152 (281)
++|+|||+||.... ...+.++..+++|+.++.++++.+.+.+ +.+++|++||..+..+.+
T Consensus 80 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~------------ 147 (263)
T PRK09072 80 GINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGSTFGSIGYP------------ 147 (263)
T ss_pred CCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecChhhCcCCC------------
Confidence 57999999986332 1223345788899999999999998642 346799999976654221
Q ss_pred CCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCcc
Q 023515 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG 229 (281)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (281)
....|+.+|.+.+.+++.++.++ +++++++.||.+.++...... ... . ......
T Consensus 148 ----------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~~~t~~~~~~~-------~~~-~-----~~~~~~ 204 (263)
T PRK09072 148 ----------GYASYCASKFALRGFSEALRRELADTGVRVLYLAPRATRTAMNSEAV-------QAL-N-----RALGNA 204 (263)
T ss_pred ----------CccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccccchhhhc-------ccc-c-----ccccCC
Confidence 11349999999999998888753 799999999999776422110 000 0 011123
Q ss_pred ceeHHHHHHHHHHhhcCCC
Q 023515 230 WVNVKDVANAHIQAFEVPS 248 (281)
Q Consensus 230 ~i~~~D~a~~i~~~~~~~~ 248 (281)
...++|+|+.++.++++..
T Consensus 205 ~~~~~~va~~i~~~~~~~~ 223 (263)
T PRK09072 205 MDDPEDVAAAVLQAIEKER 223 (263)
T ss_pred CCCHHHHHHHHHHHHhCCC
Confidence 6789999999999999764
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.4e-22 Score=162.42 Aligned_cols=214 Identities=16% Similarity=0.154 Sum_probs=151.0
Q ss_pred EEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC-CcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------CCc
Q 023515 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPN-DPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------GCD 83 (281)
Q Consensus 12 ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d 83 (281)
|+|||++|+||++++++|+++|++|++++|+.. ....+...... ...++.++++|++|.++++++++ .+|
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 78 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKA--YGVKALGVVCDVSDREDVKAVVEEIEEELGPID 78 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHh--cCCceEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999998763 22222111111 12358899999999988877765 469
Q ss_pred EeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhC---CCccEEEEeccceeeecCCCCCCCCeeeecCCCC
Q 023515 84 GVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFS 155 (281)
Q Consensus 84 ~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~ 155 (281)
+|||+||.... ...+.++..+++|+.++.++++++.+. .+.++||++||..++++.+
T Consensus 79 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~g~~--------------- 143 (239)
T TIGR01830 79 ILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVVGLMGNA--------------- 143 (239)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCccccCCCC---------------
Confidence 99999996432 123445688899999999999999864 1456899999987765322
Q ss_pred ChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCcccee
Q 023515 156 DPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVN 232 (281)
Q Consensus 156 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 232 (281)
....|+.+|.+.+.+++.++++ .|+++++++||.+.++..... ............+ ...+.+
T Consensus 144 -------~~~~y~~~k~a~~~~~~~l~~~~~~~g~~~~~i~pg~~~~~~~~~~---~~~~~~~~~~~~~-----~~~~~~ 208 (239)
T TIGR01830 144 -------GQANYAASKAGVIGFTKSLAKELASRNITVNAVAPGFIDTDMTDKL---SEKVKKKILSQIP-----LGRFGT 208 (239)
T ss_pred -------CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCCCChhhhhc---ChHHHHHHHhcCC-----cCCCcC
Confidence 1134999999999999888765 489999999999877643221 1111122222111 223678
Q ss_pred HHHHHHHHHHhhcCCCC--Cc-cEEEec
Q 023515 233 VKDVANAHIQAFEVPSA--NG-RYCLVE 257 (281)
Q Consensus 233 ~~D~a~~i~~~~~~~~~--~g-~~~~~~ 257 (281)
++|++++++.++...+. .| .|++.+
T Consensus 209 ~~~~a~~~~~~~~~~~~~~~g~~~~~~~ 236 (239)
T TIGR01830 209 PEEVANAVAFLASDEASYITGQVIHVDG 236 (239)
T ss_pred HHHHHHHHHHHhCcccCCcCCCEEEeCC
Confidence 99999999999865432 34 566654
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.5e-22 Score=163.02 Aligned_cols=215 Identities=17% Similarity=0.100 Sum_probs=146.4
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCC------
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGC------ 82 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~------ 82 (281)
||+++||||+|+||++++++|+++|++|++++|++.+ .+..+.... ..+++++++|++++++++.+++.+
T Consensus 1 ~k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~~--~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 76 (251)
T PRK06924 1 MRYVIITGTSQGLGEAIANQLLEKGTHVISISRTENK--ELTKLAEQY--NSNLTFHSLDLQDVHELETNFNEILSSIQE 76 (251)
T ss_pred CcEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCchH--HHHHHHhcc--CCceEEEEecCCCHHHHHHHHHHHHHhcCc
Confidence 4689999999999999999999999999999997632 222221111 246889999999998888777522
Q ss_pred -----cEeEEecccCC------CCCCCccchhhhhHHHHHHHHHHHhhhCC----CccEEEEeccceeeecCCCCCCCCe
Q 023515 83 -----DGVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKFP----SIKRVVLTSSMAAVLNTGKPRTPDV 147 (281)
Q Consensus 83 -----d~Vih~a~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (281)
+++||+||... ....+.+.+.+++|+.++..+++.+.+.+ ..++||++||..+....+
T Consensus 77 ~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~------- 149 (251)
T PRK06924 77 DNVSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINISSGAAKNPYF------- 149 (251)
T ss_pred ccCCceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCceEEEecchhhcCCCC-------
Confidence 27899998532 22334466888999999888888777642 235899999975532110
Q ss_pred eeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh-----cCCcEEEEcCCcccCCCCCCC---CCccHHHHHHHHhC
Q 023515 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE-----KSIDLVTINPAMVIGPLLQPT---LNTSAAAVLSLIKG 219 (281)
Q Consensus 148 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~g~~~~~irp~~v~g~~~~~~---~~~~~~~~~~~~~~ 219 (281)
....|+.+|.+.+.+++.++.+ .++++++++||.+.++..... ..............
T Consensus 150 ---------------~~~~Y~~sKaa~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~ 214 (251)
T PRK06924 150 ---------------GWSAYCSSKAGLDMFTQTVATEQEEEEYPVKIVAFSPGVMDTNMQAQIRSSSKEDFTNLDRFITL 214 (251)
T ss_pred ---------------CcHHHhHHHHHHHHHHHHHHHHhhhcCCCeEEEEecCCccccHhHHHHHhcCcccchHHHHHHHH
Confidence 1245999999999999988865 379999999999977642110 00000011111110
Q ss_pred CCCCCCCCccceeHHHHHHHHHHhhcC-CCCCccEE
Q 023515 220 AQTYPNVTFGWVNVKDVANAHIQAFEV-PSANGRYC 254 (281)
Q Consensus 220 ~~~~~~~~~~~i~~~D~a~~i~~~~~~-~~~~g~~~ 254 (281)
. + ...+..++|+|+.++.++.. ....|.+.
T Consensus 215 ~---~--~~~~~~~~dva~~~~~l~~~~~~~~G~~~ 245 (251)
T PRK06924 215 K---E--EGKLLSPEYVAKALRNLLETEDFPNGEVI 245 (251)
T ss_pred h---h--cCCcCCHHHHHHHHHHHHhcccCCCCCEe
Confidence 0 1 11267999999999999986 33455443
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-21 Score=163.38 Aligned_cols=223 Identities=15% Similarity=0.090 Sum_probs=155.0
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---CCc
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---GCD 83 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---~~d 83 (281)
+++|+++||||+|+||+++++.|+++|++|++++|++++...+....... ...++.++.+|+++++++.++++ ++|
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~D~~~~~~~~~~~~~~g~id 83 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAA-HGVDVAVHALDLSSPEAREQLAAEAGDID 83 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhh-cCCceEEEEecCCCHHHHHHHHHHhCCCC
Confidence 56899999999999999999999999999999999875444332222111 12467889999999988887775 689
Q ss_pred EeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeecCCCC
Q 023515 84 GVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFS 155 (281)
Q Consensus 84 ~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~ 155 (281)
++|||||... ....+.|+..+++|+.+...+++++.+.+ +.+++|++||.....+..
T Consensus 84 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~iss~~~~~~~~--------------- 148 (259)
T PRK06125 84 ILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARGSGVIVNVIGAAGENPDA--------------- 148 (259)
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEecCccccCCCC---------------
Confidence 9999998632 12234567889999999999999987542 345899999875532110
Q ss_pred ChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCC-------ccHHHHHHHHhCCCCCCC
Q 023515 156 DPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLN-------TSAAAVLSLIKGAQTYPN 225 (281)
Q Consensus 156 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 225 (281)
....|+.+|.+.+.+++.++.+ .|++++.+.||.+.++....... .....+....... +
T Consensus 149 -------~~~~y~ask~al~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~- 217 (259)
T PRK06125 149 -------DYICGSAGNAALMAFTRALGGKSLDDGVRVVGVNPGPVATDRMLTLLKGRARAELGDESRWQELLAGL---P- 217 (259)
T ss_pred -------CchHhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccHHHHHHHHhhhhcccCCHHHHHHHhccC---C-
Confidence 1234899999999999998764 48999999999998874211000 0011111111111 1
Q ss_pred CCccceeHHHHHHHHHHhhcCCC--CCccEEEec
Q 023515 226 VTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVE 257 (281)
Q Consensus 226 ~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~ 257 (281)
...+..++|+|+++++++.... ..|..+..+
T Consensus 218 -~~~~~~~~~va~~~~~l~~~~~~~~~G~~i~vd 250 (259)
T PRK06125 218 -LGRPATPEEVADLVAFLASPRSGYTSGTVVTVD 250 (259)
T ss_pred -cCCCcCHHHHHHHHHHHcCchhccccCceEEec
Confidence 1236789999999999997542 356544433
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=166.50 Aligned_cols=226 Identities=18% Similarity=0.116 Sum_probs=151.2
Q ss_pred hccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC----------cchhhhhhhccCCCCcEEEEEcCCCCcCc
Q 023515 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND----------PKKTRHLLALDGASERLQLFKANLLEEGS 74 (281)
Q Consensus 5 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~----------~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 74 (281)
..+++|+++||||+++||++++++|+++|++|++++|+..+ ...+.+.... ...++.++++|++|+++
T Consensus 4 ~~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~Dv~~~~~ 81 (305)
T PRK08303 4 KPLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTA--AGGRGIAVQVDHLVPEQ 81 (305)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHh--cCCceEEEEcCCCCHHH
Confidence 34678999999999999999999999999999999997432 1112222111 12357789999999988
Q ss_pred HHHHhc-------CCcEeEEec-ccC------CC---CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccce
Q 023515 75 FDSIVD-------GCDGVCHTA-SPF------YH---DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMA 134 (281)
Q Consensus 75 ~~~~~~-------~~d~Vih~a-~~~------~~---~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~ 134 (281)
++.+++ ++|++|||| +.. .. ...+.+.+.+++|+.++..+++++.+.+ +..+||++||..
T Consensus 82 v~~~~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~~g~IV~isS~~ 161 (305)
T PRK08303 82 VRALVERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRPGGLVVEITDGT 161 (305)
T ss_pred HHHHHHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCcEEEEECCcc
Confidence 887764 589999999 631 11 1123456788999999999999998864 236899999965
Q ss_pred eeecCCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHH
Q 023515 135 AVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAA 211 (281)
Q Consensus 135 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~ 211 (281)
+....... + ....|+.+|++...+++.++.++ |+++++|.||.+.++...........
T Consensus 162 ~~~~~~~~-----------~--------~~~~Y~asKaal~~lt~~La~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~ 222 (305)
T PRK08303 162 AEYNATHY-----------R--------LSVFYDLAKTSVNRLAFSLAHELAPHGATAVALTPGWLRSEMMLDAFGVTEE 222 (305)
T ss_pred ccccCcCC-----------C--------CcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEecCCccccHHHHHhhccCcc
Confidence 43211000 0 11349999999999999988865 79999999999987642100000000
Q ss_pred HHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC---CCccEEE
Q 023515 212 AVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS---ANGRYCL 255 (281)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~---~~g~~~~ 255 (281)
.+.......+. ..-+..++|+|.++++++.... ..|+++.
T Consensus 223 ~~~~~~~~~p~----~~~~~~peevA~~v~fL~s~~~~~~itG~~l~ 265 (305)
T PRK08303 223 NWRDALAKEPH----FAISETPRYVGRAVAALAADPDVARWNGQSLS 265 (305)
T ss_pred chhhhhccccc----cccCCCHHHHHHHHHHHHcCcchhhcCCcEEE
Confidence 01111110010 1224579999999999998653 2565543
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.8e-22 Score=164.93 Aligned_cols=210 Identities=16% Similarity=0.092 Sum_probs=145.4
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------CC
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------GC 82 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~ 82 (281)
|+++||||+|+||++++++|+++|++|++++|+.+..+.......... ...+.++++|+++++++.++++ ++
T Consensus 1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALG-GTVPEHRALDISDYDAVAAFAADIHAAHGSM 79 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence 479999999999999999999999999999987654333222111111 1235667899999888776654 57
Q ss_pred cEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC----CccEEEEeccceeeecCCCCCCCCeeeecCC
Q 023515 83 DGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP----SIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (281)
Q Consensus 83 d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~ 153 (281)
|+|||+||... +...+.++..+++|+.++.++++++.+.+ ..+++|++||..+..+.+
T Consensus 80 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~~~~------------- 146 (272)
T PRK07832 80 DVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAGLVALP------------- 146 (272)
T ss_pred CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccccccCCCC-------------
Confidence 99999998632 12234456889999999999999987532 236899999976543111
Q ss_pred CCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCC----CccHHHHHHHHhCCCCCCCC
Q 023515 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTL----NTSAAAVLSLIKGAQTYPNV 226 (281)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 226 (281)
....|+.+|.+.+.+.+.++.+ .++++++++||.+.++...... ............. .
T Consensus 147 ---------~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~------~ 211 (272)
T PRK07832 147 ---------WHAAYSASKFGLRGLSEVLRFDLARHGIGVSVVVPGAVKTPLVNTVEIAGVDREDPRVQKWVDR------F 211 (272)
T ss_pred ---------CCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhcccccccCcchhhHHHHHHh------c
Confidence 1234999999999888877754 4899999999999988543210 0011111111110 1
Q ss_pred CccceeHHHHHHHHHHhhcCCC
Q 023515 227 TFGWVNVKDVANAHIQAFEVPS 248 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~ 248 (281)
....+.++|+|+++++++.+++
T Consensus 212 ~~~~~~~~~vA~~~~~~~~~~~ 233 (272)
T PRK07832 212 RGHAVTPEKAAEKILAGVEKNR 233 (272)
T ss_pred ccCCCCHHHHHHHHHHHHhcCC
Confidence 1235799999999999997543
|
|
| >KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-21 Score=168.45 Aligned_cols=265 Identities=21% Similarity=0.265 Sum_probs=180.0
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCC---CEEEEEEcCCCCcch---hhhhhh---------c-cCCCCcEEEEEcCCC
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRG---YTVKASVRDPNDPKK---TRHLLA---------L-DGASERLQLFKANLL 70 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~---~~~~~~---------~-~~~~~~~~~~~~D~~ 70 (281)
+++|+|||||||||+|+-++++|+..- .++.++.|....... +..+.. . .....++..+.||+.
T Consensus 10 ~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~GDi~ 89 (467)
T KOG1221|consen 10 YKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVPIAGDIS 89 (467)
T ss_pred hCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecceecccccc
Confidence 578999999999999999999999763 478888886543322 222211 0 111257889999998
Q ss_pred Cc------CcHHHHhcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCC
Q 023515 71 EE------GSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRT 144 (281)
Q Consensus 71 ~~------~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~ 144 (281)
++ +++..+.+++|+|||+||-... ++.++....+|..||+++++.|++..+.+-++|+||+.+..... ..
T Consensus 90 ~~~LGis~~D~~~l~~eV~ivih~AAtvrF--de~l~~al~iNt~Gt~~~l~lak~~~~l~~~vhVSTAy~n~~~~--~i 165 (467)
T KOG1221|consen 90 EPDLGISESDLRTLADEVNIVIHSAATVRF--DEPLDVALGINTRGTRNVLQLAKEMVKLKALVHVSTAYSNCNVG--HI 165 (467)
T ss_pred CcccCCChHHHHHHHhcCCEEEEeeeeecc--chhhhhhhhhhhHhHHHHHHHHHHhhhhheEEEeehhheecccc--cc
Confidence 65 4455677799999999997665 45566888999999999999999987889999999987752111 11
Q ss_pred CCeee--------------ecCCCC------ChhhhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCC
Q 023515 145 PDVVV--------------DETWFS------DPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQP 204 (281)
Q Consensus 145 ~~~~~--------------~e~~~~------~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~ 204 (281)
...+. +|+... .|.......+.|..+|+.+|.++.+.+ .+++++++||+.|......|
T Consensus 166 ~E~~y~~~~~~~~~~~i~~~~~~~~~~ld~~~~~l~~~~PNTYtfTKal~E~~i~~~~--~~lPivIiRPsiI~st~~EP 243 (467)
T KOG1221|consen 166 EEKPYPMPETCNPEKILKLDENLSDELLDQKAPKLLGGWPNTYTFTKALAEMVIQKEA--ENLPLVIIRPSIITSTYKEP 243 (467)
T ss_pred cccccCccccCCHHHHHhhhccchHHHHHHhhHHhcCCCCCceeehHhhHHHHHHhhc--cCCCeEEEcCCceeccccCC
Confidence 11111 111000 011111124569999999999998864 47999999999998875544
Q ss_pred CCCcc------HHHHHHHHhCC----CCCCCCCccceeHHHHHHHHHHhhc----CCCC--CccEEEec---CCCCHHHH
Q 023515 205 TLNTS------AAAVLSLIKGA----QTYPNVTFGWVNVKDVANAHIQAFE----VPSA--NGRYCLVE---RVSHYSEI 265 (281)
Q Consensus 205 ~~~~~------~~~~~~~~~~~----~~~~~~~~~~i~~~D~a~~i~~~~~----~~~~--~g~~~~~~---~~~t~~e~ 265 (281)
..+.+ ...+....+|. -...+..-+.|.+|.|+.+++.+.- +.+. .-+|+++. ++++|.++
T Consensus 244 ~pGWidn~~gp~g~i~g~gkGvlr~~~~d~~~~adiIPvD~vvN~~ia~~~~~~~~~~~~~~~IY~~tss~~Np~t~~~~ 323 (467)
T KOG1221|consen 244 FPGWIDNLNGPDGVIIGYGKGVLRCFLVDPKAVADIIPVDMVVNAMIASAWQHAGNSKEKTPPIYHLTSSNDNPVTWGDF 323 (467)
T ss_pred CCCccccCCCCceEEEEeccceEEEEEEccccccceeeHHHHHHHHHHHHHHHhccCCCCCCcEEEecccccCcccHHHH
Confidence 32211 11111111221 1224677899999999999996652 1111 23899863 78999999
Q ss_pred HHHHHHhCCCCC
Q 023515 266 VNIIRELYPAFQ 277 (281)
Q Consensus 266 ~~~i~~~~~~~~ 277 (281)
.+...+.+...|
T Consensus 324 ~e~~~~~~~~~P 335 (467)
T KOG1221|consen 324 IELALRYFEKIP 335 (467)
T ss_pred HHHHHHhcccCC
Confidence 999999876544
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-21 Score=160.72 Aligned_cols=221 Identities=15% Similarity=0.093 Sum_probs=150.6
Q ss_pred ccCCCeEEEeCC--chHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 6 AAAGKVVCVTGA--SGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 6 ~~~~~~ilItGa--tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
.+++|+++|||| +++||.+++++|+++|++|++++|+... +.++...... ..++.++++|++|+++++++++
T Consensus 4 ~~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~-~~~~~~~~~~--~~~~~~~~~Dv~~~~~i~~~~~~~~ 80 (256)
T PRK07889 4 LLEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRAL-RLTERIAKRL--PEPAPVLELDVTNEEHLASLADRVR 80 (256)
T ss_pred cccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccch-hHHHHHHHhc--CCCCcEEeCCCCCHHHHHHHHHHHH
Confidence 356899999999 8999999999999999999999886421 1111111111 1256789999999988877664
Q ss_pred ----CCcEeEEecccCCC------C---CCCccchhhhhHHHHHHHHHHHhhhCCC-ccEEEEeccceeeecCCCCCCCC
Q 023515 81 ----GCDGVCHTASPFYH------D---AKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAVLNTGKPRTPD 146 (281)
Q Consensus 81 ----~~d~Vih~a~~~~~------~---~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~ 146 (281)
++|++|||||.... . ..+.+++.+++|+.++..+++.+.+.+. .+++|++|+..... .+
T Consensus 81 ~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~~~~~~-~~------ 153 (256)
T PRK07889 81 EHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDFDATVA-WP------ 153 (256)
T ss_pred HHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEeeccccc-CC------
Confidence 68999999986421 1 1233556799999999999999988643 35788887642211 00
Q ss_pred eeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCC
Q 023515 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY 223 (281)
Q Consensus 147 ~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~ 223 (281)
...+|+.||++.+.+++.++.++ |+++++|.||.+.++....... ............|
T Consensus 154 ----------------~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~-~~~~~~~~~~~~p-- 214 (256)
T PRK07889 154 ----------------AYDWMGVAKAALESTNRYLARDLGPRGIRVNLVAAGPIRTLAAKAIPG-FELLEEGWDERAP-- 214 (256)
T ss_pred ----------------ccchhHHHHHHHHHHHHHHHHHhhhcCeEEEeeccCcccChhhhcccC-cHHHHHHHHhcCc--
Confidence 12348999999999999988764 8999999999998875321110 1111111111111
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCCC--CccEEEec
Q 023515 224 PNVTFGWVNVKDVANAHIQAFEVPSA--NGRYCLVE 257 (281)
Q Consensus 224 ~~~~~~~i~~~D~a~~i~~~~~~~~~--~g~~~~~~ 257 (281)
..+.+..++|+|+++++++..... .|.++..+
T Consensus 215 --~~~~~~~p~evA~~v~~l~s~~~~~~tG~~i~vd 248 (256)
T PRK07889 215 --LGWDVKDPTPVARAVVALLSDWFPATTGEIVHVD 248 (256)
T ss_pred --cccccCCHHHHHHHHHHHhCcccccccceEEEEc
Confidence 112367899999999999986433 56554443
|
|
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-21 Score=159.96 Aligned_cols=219 Identities=17% Similarity=0.065 Sum_probs=150.6
Q ss_pred ccCCCeEEEeCCch--HHHHHHHHHHHHCCCEEEEEEcCCCC--------cchhhhhh-hccCCCCcEEEEEcCCCCcCc
Q 023515 6 AAAGKVVCVTGASG--YIASWLVKLLLSRGYTVKASVRDPND--------PKKTRHLL-ALDGASERLQLFKANLLEEGS 74 (281)
Q Consensus 6 ~~~~~~ilItGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~--------~~~~~~~~-~~~~~~~~~~~~~~D~~~~~~ 74 (281)
.+++|+++||||+| +||++++++|+++|++|++++|.... ...+.+.. .......++.++++|+++.++
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~ 82 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDA 82 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHH
Confidence 46689999999995 89999999999999999988653211 11111111 111112468889999999988
Q ss_pred HHHHhc-------CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecC
Q 023515 75 FDSIVD-------GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNT 139 (281)
Q Consensus 75 ~~~~~~-------~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~ 139 (281)
+.++++ ++|+|||+||... ....+.++..+++|+.++..+.+.+.+.+ +.++||++||..+..+.
T Consensus 83 i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~ 162 (256)
T PRK12859 83 PKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKSGGRIINMTSGQFQGPM 162 (256)
T ss_pred HHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEEcccccCCCC
Confidence 887765 4799999998632 12233466789999999999987776542 24589999997654311
Q ss_pred CCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHH
Q 023515 140 GKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSL 216 (281)
Q Consensus 140 ~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~ 216 (281)
+ ....|+.+|++.+.++++++.+ .|++++.++||.+.++.... .+...
T Consensus 163 ~----------------------~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~PG~i~t~~~~~-------~~~~~ 213 (256)
T PRK12859 163 V----------------------GELAYAATKGAIDALTSSLAAEVAHLGITVNAINPGPTDTGWMTE-------EIKQG 213 (256)
T ss_pred C----------------------CchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEEccccCCCCCH-------HHHHH
Confidence 1 1234999999999999998876 48999999999998764221 11111
Q ss_pred HhCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCccEEEec
Q 023515 217 IKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVE 257 (281)
Q Consensus 217 ~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~ 257 (281)
.... .+ ...+..++|+|+++.+++.... ..|.++..+
T Consensus 214 ~~~~--~~--~~~~~~~~d~a~~~~~l~s~~~~~~~G~~i~~d 252 (256)
T PRK12859 214 LLPM--FP--FGRIGEPKDAARLIKFLASEEAEWITGQIIHSE 252 (256)
T ss_pred HHhc--CC--CCCCcCHHHHHHHHHHHhCccccCccCcEEEeC
Confidence 1111 11 1225689999999999987543 256555443
|
|
| >KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-22 Score=155.62 Aligned_cols=217 Identities=18% Similarity=0.175 Sum_probs=166.6
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++|++++||+.|+||++++++|+++|..+.+++.+.++.+...+++...+ ...+.|+++|+++..+++++++
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En~~a~akL~ai~p-~~~v~F~~~DVt~~~~~~~~f~ki~~~f 81 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEENPEAIAKLQAINP-SVSVIFIKCDVTNRGDLEAAFDKILATF 81 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCchheeehhhhhCHHHHHHHhccCC-CceEEEEEeccccHHHHHHHHHHHHHHh
Confidence 569999999999999999999999999888888877777666565554332 3689999999999999888876
Q ss_pred -CCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCc------cEEEEeccceeeecCCCCCCCCeeeecCC
Q 023515 81 -GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSI------KRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (281)
Q Consensus 81 -~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~------~~~v~~SS~~~~~~~~~~~~~~~~~~e~~ 153 (281)
.+|++||.||... +++|+..+.+|+.|..+-...+.++++. +-+|++||..+.+ +.+-
T Consensus 82 g~iDIlINgAGi~~---dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~GL~--P~p~---------- 146 (261)
T KOG4169|consen 82 GTIDILINGAGILD---DKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVAGLD--PMPV---------- 146 (261)
T ss_pred CceEEEEccccccc---chhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEeccccccC--cccc----------
Confidence 6899999999866 5779999999999999999999987543 3599999976654 1111
Q ss_pred CCChhhhccCCchhhhhHHHHHHHHHHHHH-----hcCCcEEEEcCCcccCCCCC-----CCCCccHHHHHHHHhCCCCC
Q 023515 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAK-----EKSIDLVTINPAMVIGPLLQ-----PTLNTSAAAVLSLIKGAQTY 223 (281)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~-----~~g~~~~~irp~~v~g~~~~-----~~~~~~~~~~~~~~~~~~~~ 223 (281)
...|++||+..-.+.|+++. +.|+++..+.||.+-+.... ..+......+++.+...
T Consensus 147 ----------~pVY~AsKaGVvgFTRSla~~ayy~~sGV~~~avCPG~t~t~l~~~~~~~~~~~e~~~~~~~~l~~~--- 213 (261)
T KOG4169|consen 147 ----------FPVYAASKAGVVGFTRSLADLAYYQRSGVRFNAVCPGFTRTDLAENIDASGGYLEYSDSIKEALERA--- 213 (261)
T ss_pred ----------chhhhhcccceeeeehhhhhhhhHhhcCEEEEEECCCcchHHHHHHHHhcCCcccccHHHHHHHHHc---
Confidence 12499999999999988654 45999999999998654211 12222233444444432
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCCCCccEEEec
Q 023515 224 PNVTFGWVNVKDVANAHIQAFEVPSANGRYCLVE 257 (281)
Q Consensus 224 ~~~~~~~i~~~D~a~~i~~~~~~~~~~g~~~~~~ 257 (281)
.. -.+.+++..++.+++.+..+..|.+..
T Consensus 214 ---~~--q~~~~~a~~~v~aiE~~~NGaiw~v~~ 242 (261)
T KOG4169|consen 214 ---PK--QSPACCAINIVNAIEYPKNGAIWKVDS 242 (261)
T ss_pred ---cc--CCHHHHHHHHHHHHhhccCCcEEEEec
Confidence 12 378999999999999977666777764
|
|
| >TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=161.10 Aligned_cols=204 Identities=16% Similarity=0.192 Sum_probs=145.8
Q ss_pred EEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC-cchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------CCc
Q 023515 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------GCD 83 (281)
Q Consensus 12 ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d 83 (281)
|+||||+|+||.+++++|+++|++|++++|+..+ ...+...... ...++.++++|++|.+++.++++ .+|
T Consensus 1 vlItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i~ 78 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQA--QGGNARLLQFDVADRVACRTLLEADIAEHGAYY 78 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHH--cCCeEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 6899999999999999999999999999876432 2222211111 12468999999999988877665 579
Q ss_pred EeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhh-hC---CCccEEEEeccceeeecCCCCCCCCeeeecCCC
Q 023515 84 GVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCA-KF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWF 154 (281)
Q Consensus 84 ~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~-~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~ 154 (281)
.+||+||.... ...+.++..+++|+.++.++++++. +. .+.+++|++||..++++.+
T Consensus 79 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~~~~~~~-------------- 144 (239)
T TIGR01831 79 GVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVSGVMGNR-------------- 144 (239)
T ss_pred EEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchhhccCCC--------------
Confidence 99999986332 2234567889999999999998763 21 1446899999987766321
Q ss_pred CChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccce
Q 023515 155 SDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWV 231 (281)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 231 (281)
....|+.+|.+.+.+++.++.++ |++++.++||.+.++..... ........... + ...+.
T Consensus 145 --------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~----~~~~~~~~~~~---~--~~~~~ 207 (239)
T TIGR01831 145 --------GQVNYSAAKAGLIGATKALAVELAKRKITVNCIAPGLIDTEMLAEV----EHDLDEALKTV---P--MNRMG 207 (239)
T ss_pred --------CCcchHHHHHHHHHHHHHHHHHHhHhCeEEEEEEEccCccccchhh----hHHHHHHHhcC---C--CCCCC
Confidence 12349999999999998887753 89999999999988764321 11112222111 1 12356
Q ss_pred eHHHHHHHHHHhhcCCC
Q 023515 232 NVKDVANAHIQAFEVPS 248 (281)
Q Consensus 232 ~~~D~a~~i~~~~~~~~ 248 (281)
.++|+++++.+++....
T Consensus 208 ~~~~va~~~~~l~~~~~ 224 (239)
T TIGR01831 208 QPAEVASLAGFLMSDGA 224 (239)
T ss_pred CHHHHHHHHHHHcCchh
Confidence 89999999999998643
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found. |
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=167.50 Aligned_cols=201 Identities=15% Similarity=0.153 Sum_probs=143.9
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCc--CcHHHH---hc--
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEE--GSFDSI---VD-- 80 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~--~~~~~~---~~-- 80 (281)
.+++++||||||+||++++++|+++|++|++++|++++.+.+.+.........++..+.+|+++. +.++++ +.
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~~ 131 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEGL 131 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcCC
Confidence 47899999999999999999999999999999998766554433322211123677888999852 223322 33
Q ss_pred CCcEeEEecccCCC-------CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 GCDGVCHTASPFYH-------DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 ~~d~Vih~a~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|++|||||.... ...+.++..+++|+.++..+++++.+.+ +.+++|++||..++...+.+
T Consensus 132 didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~a~~~~~~~p-------- 203 (320)
T PLN02780 132 DVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKGAIINIGSGAAIVIPSDP-------- 203 (320)
T ss_pred CccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCcEEEEEechhhccCCCCc--------
Confidence 35699999986321 1223456789999999999999988642 45789999998765311000
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
....|+.||++.+.+.+.++.++ |++++++.||.+.++..... .. .
T Consensus 204 ------------~~~~Y~aSKaal~~~~~~L~~El~~~gI~V~~v~PG~v~T~~~~~~------------~~-------~ 252 (320)
T PLN02780 204 ------------LYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMASIR------------RS-------S 252 (320)
T ss_pred ------------cchHHHHHHHHHHHHHHHHHHHHhccCeEEEEEeeCceecCccccc------------CC-------C
Confidence 12459999999999999998764 89999999999987652200 00 1
Q ss_pred ccceeHHHHHHHHHHhhcCC
Q 023515 228 FGWVNVKDVANAHIQAFEVP 247 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~ 247 (281)
.....++++|+.++..+...
T Consensus 253 ~~~~~p~~~A~~~~~~~~~~ 272 (320)
T PLN02780 253 FLVPSSDGYARAALRWVGYE 272 (320)
T ss_pred CCCCCHHHHHHHHHHHhCCC
Confidence 11358999999999999643
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-21 Score=160.83 Aligned_cols=204 Identities=17% Similarity=0.150 Sum_probs=145.4
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCC--CcCcHHHHh----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLL--EEGSFDSIV---- 79 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~--~~~~~~~~~---- 79 (281)
.+++|+|+||||+|+||.+++++|+++|++|++++|+.++...+....... ...++.++.+|++ +.+++.+++
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAA-GGPQPAIIPLDLLTATPQNYQQLADTIE 87 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhc-CCCCceEEEecccCCCHHHHHHHHHHHH
Confidence 356899999999999999999999999999999999876544433322111 1235677888886 444444433
Q ss_pred ---cCCcEeEEecccCC------CCCCCccchhhhhHHHHHHHHHHHhhhC---CCccEEEEeccceeeecCCCCCCCCe
Q 023515 80 ---DGCDGVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDV 147 (281)
Q Consensus 80 ---~~~d~Vih~a~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (281)
.++|+|||+|+... ....+.++..+++|+.++.++++++.+. .+.++||++||..+..+.+
T Consensus 88 ~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss~~~~~~~~------- 160 (247)
T PRK08945 88 EQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSSSVGRQGRA------- 160 (247)
T ss_pred HHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEccHhhcCCCC-------
Confidence 26899999998632 2223456788999999999999988642 2567899999976654211
Q ss_pred eeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCC
Q 023515 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP 224 (281)
Q Consensus 148 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (281)
....|+.+|++.+.+++.+++++ ++++++++|+.+.++...... ...
T Consensus 161 ---------------~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~~~~v~pg~v~t~~~~~~~-----------~~~---- 210 (247)
T PRK08945 161 ---------------NWGAYAVSKFATEGMMQVLADEYQGTNLRVNCINPGGTRTAMRASAF-----------PGE---- 210 (247)
T ss_pred ---------------CCcccHHHHHHHHHHHHHHHHHhcccCEEEEEEecCCccCcchhhhc-----------Ccc----
Confidence 12349999999999999888765 789999999998765321110 000
Q ss_pred CCCccceeHHHHHHHHHHhhcCCC
Q 023515 225 NVTFGWVNVKDVANAHIQAFEVPS 248 (281)
Q Consensus 225 ~~~~~~i~~~D~a~~i~~~~~~~~ 248 (281)
....+..++|+++++.+++....
T Consensus 211 -~~~~~~~~~~~~~~~~~~~~~~~ 233 (247)
T PRK08945 211 -DPQKLKTPEDIMPLYLYLMGDDS 233 (247)
T ss_pred -cccCCCCHHHHHHHHHHHhCccc
Confidence 11236789999999999986544
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.6e-22 Score=182.59 Aligned_cols=214 Identities=20% Similarity=0.139 Sum_probs=153.4
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+.+++++||||+|+||++++++|+++|++|++++|+.++.+.+....... ..++.++++|++|++++.++++
T Consensus 313 ~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 390 (582)
T PRK05855 313 FSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAA--GAVAHAYRVDVSDADAMEAFAEWVRAEH 390 (582)
T ss_pred CCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 45789999999999999999999999999999999875544433332221 2468899999999988887765
Q ss_pred -CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---C-ccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 -GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---S-IKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 -~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~-~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|+||||||... ....+.++..+++|+.|+.++++++.+.+ + .++||++||..++.+.+
T Consensus 391 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~---------- 460 (582)
T PRK05855 391 GVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYAPSR---------- 460 (582)
T ss_pred CCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccCCC----------
Confidence 4899999999732 12234567889999999999999887642 1 35899999987764211
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCC-c-cH---HHHHHHHhCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLN-T-SA---AAVLSLIKGAQT 222 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~-~-~~---~~~~~~~~~~~~ 222 (281)
....|+.+|++.+.+++.++.+ .|+++++++||.|-++....... . .. ......... .
T Consensus 461 ------------~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~--~ 526 (582)
T PRK05855 461 ------------SLPAYATSKAAVLMLSECLRAELAAAGIGVTAICPGFVDTNIVATTRFAGADAEDEARRRGRADK--L 526 (582)
T ss_pred ------------CCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCCCcccchhccccCCcccchhhhHHhhhhh--h
Confidence 1245999999999999988765 38999999999998875332110 0 00 000000000 0
Q ss_pred CCCCCccceeHHHHHHHHHHhhcCCCC
Q 023515 223 YPNVTFGWVNVKDVANAHIQAFEVPSA 249 (281)
Q Consensus 223 ~~~~~~~~i~~~D~a~~i~~~~~~~~~ 249 (281)
. ......++|+|++++.++.++..
T Consensus 527 ~---~~~~~~p~~va~~~~~~~~~~~~ 550 (582)
T PRK05855 527 Y---QRRGYGPEKVAKAIVDAVKRNKA 550 (582)
T ss_pred c---cccCCCHHHHHHHHHHHHHcCCC
Confidence 0 01134789999999999987654
|
|
| >TIGR02685 pter_reduc_Leis pteridine reductase | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-20 Score=157.79 Aligned_cols=215 Identities=18% Similarity=0.175 Sum_probs=142.9
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCC-CCcchhhhhhhccCCCCcEEEEEcCCCCcCcH----HHHh-----
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDP-NDPKKTRHLLALDGASERLQLFKANLLEEGSF----DSIV----- 79 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~----~~~~----- 79 (281)
++++||||+|+||++++++|+++|++|+++.|+. +....+.+..... ....+.++.+|++|.+.+ ++++
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~~~ 80 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEGYRVVLHYHRSAAAASTLAAELNAR-RPNSAVTCQADLSNSATLFSRCEAIIDACFR 80 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCCCeEEEEcCCcHHHHHHHHHHHHhc-cCCceEEEEccCCCchhhHHHHHHHHHHHHH
Confidence 5799999999999999999999999999987653 2332222221111 123566789999998754 3333
Q ss_pred --cCCcEeEEecccCCC------CCC----------CccchhhhhHHHHHHHHHHHhhhCCC---------ccEEEEecc
Q 023515 80 --DGCDGVCHTASPFYH------DAK----------DPQVELLDPAVKGTLNVLNSCAKFPS---------IKRVVLTSS 132 (281)
Q Consensus 80 --~~~d~Vih~a~~~~~------~~~----------~~~~~~~~~n~~~~~~l~~~~~~~~~---------~~~~v~~SS 132 (281)
.++|+||||||.... ... ..+...+++|+.++..+++++.+.+. ...+|++||
T Consensus 81 ~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~~s 160 (267)
T TIGR02685 81 AFGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNLSIVNLCD 160 (267)
T ss_pred ccCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCeEEEEehh
Confidence 268999999985321 111 12557899999999999998876531 135888887
Q ss_pred ceeeecCCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCcc
Q 023515 133 MAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTS 209 (281)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~ 209 (281)
.......+ ....|+.+|++.+.+++.++.+ .|+++++|+||.+.+|...+
T Consensus 161 ~~~~~~~~----------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~~~~~~~~~----- 213 (267)
T TIGR02685 161 AMTDQPLL----------------------GFTMYTMAKHALEGLTRSAALELAPLQIRVNGVAPGLSLLPDAMP----- 213 (267)
T ss_pred hhccCCCc----------------------ccchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCccCccccc-----
Confidence 64432100 1245999999999999999877 48999999999987663211
Q ss_pred HHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCCC--CccEEEe
Q 023515 210 AAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPSA--NGRYCLV 256 (281)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~~--~g~~~~~ 256 (281)
...........+ .+ ..+..++|+++++++++.+... .|..+..
T Consensus 214 ~~~~~~~~~~~~-~~---~~~~~~~~va~~~~~l~~~~~~~~~G~~~~v 258 (267)
T TIGR02685 214 FEVQEDYRRKVP-LG---QREASAEQIADVVIFLVSPKAKYITGTCIKV 258 (267)
T ss_pred hhHHHHHHHhCC-CC---cCCCCHHHHHHHHHHHhCcccCCcccceEEE
Confidence 111111111111 11 1256899999999999976532 4544333
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. |
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-21 Score=159.82 Aligned_cols=206 Identities=17% Similarity=0.095 Sum_probs=141.7
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--------
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------- 80 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------- 80 (281)
||+++||||||+||++++++|+++|++|++++|+..+.. . .. ...++.++++|+++.+++.++++
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~~~--~---~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 73 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHPSL--A---AA--AGERLAEVELDLSDAAAAAAWLAGDLLAAFV 73 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhCCCEEEEEecCcchhh--h---hc--cCCeEEEEEeccCCHHHHHHHHHHHHHHHhc
Confidence 458999999999999999999999999999999764321 0 01 12468889999999988877432
Q ss_pred ---CCcEeEEecccCCC------CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCee
Q 023515 81 ---GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVV 148 (281)
Q Consensus 81 ---~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (281)
.+|++||||+.... ...+.++..+++|+.++..+++.+.+.+ +.+++|++||..++.+.+
T Consensus 74 ~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~-------- 145 (243)
T PRK07023 74 DGASRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAERRILHISSGAARNAYA-------- 145 (243)
T ss_pred cCCCceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCCCEEEEEeChhhcCCCC--------
Confidence 47899999986332 1123456889999999988888877642 346899999986653111
Q ss_pred eecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh--cCCcEEEEcCCcccCCCCCCC---CCccHHHHHHHHhCCCCC
Q 023515 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE--KSIDLVTINPAMVIGPLLQPT---LNTSAAAVLSLIKGAQTY 223 (281)
Q Consensus 149 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~--~g~~~~~irp~~v~g~~~~~~---~~~~~~~~~~~~~~~~~~ 223 (281)
....|+.+|.+.|.+++.++.+ .++++++++||.+.++..... ...............
T Consensus 146 --------------~~~~Y~~sK~a~~~~~~~~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~--- 208 (243)
T PRK07023 146 --------------GWSVYCATKAALDHHARAVALDANRALRIVSLAPGVVDTGMQATIRATDEERFPMRERFRELK--- 208 (243)
T ss_pred --------------CchHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCccccHHHHHHHhcccccchHHHHHHHhh---
Confidence 1245999999999999988865 589999999999977642100 000000011111100
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCC
Q 023515 224 PNVTFGWVNVKDVANAHIQAFEVPS 248 (281)
Q Consensus 224 ~~~~~~~i~~~D~a~~i~~~~~~~~ 248 (281)
+ ....+.++|+|+.++..+..+.
T Consensus 209 ~--~~~~~~~~~va~~~~~~l~~~~ 231 (243)
T PRK07023 209 A--SGALSTPEDAARRLIAYLLSDD 231 (243)
T ss_pred h--cCCCCCHHHHHHHHHHHHhccc
Confidence 0 1226789999997666655443
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-21 Score=157.78 Aligned_cols=192 Identities=11% Similarity=0.049 Sum_probs=143.0
Q ss_pred eEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----CCcEeE
Q 023515 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----GCDGVC 86 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~d~Vi 86 (281)
+++||||+|+||+++++.|+++|++|++++|+.++...+... .++.++++|++++++++++++ ++|++|
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~-------~~~~~~~~D~~~~~~v~~~~~~~~~~id~lv 74 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKE-------LDVDAIVCDNTDPASLEEARGLFPHHLDTIV 74 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh-------ccCcEEecCCCCHHHHHHHHHHHhhcCcEEE
Confidence 699999999999999999999999999999976543332211 135688999999998888775 589999
Q ss_pred EecccCC----C----C--CCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCCCCCeeeecCCCC
Q 023515 87 HTASPFY----H----D--AKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFS 155 (281)
Q Consensus 87 h~a~~~~----~----~--~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~ 155 (281)
|||+... . . ..+.|+..+++|+.++.++++++.+.+ ..+++|++||....
T Consensus 75 ~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~------------------- 135 (223)
T PRK05884 75 NVPAPSWDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRSGGSIISVVPENPP------------------- 135 (223)
T ss_pred ECCCccccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEecCCCC-------------------
Confidence 9997411 0 0 134577999999999999999999853 23689999986410
Q ss_pred ChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCcccee
Q 023515 156 DPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVN 232 (281)
Q Consensus 156 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 232 (281)
....|+.+|++.+.+++.++.+ .|++++.|.||.+.++... .. ... ....
T Consensus 136 -------~~~~Y~asKaal~~~~~~la~e~~~~gI~v~~v~PG~v~t~~~~-----------~~-~~~--------p~~~ 188 (223)
T PRK05884 136 -------AGSAEAAIKAALSNWTAGQAAVFGTRGITINAVACGRSVQPGYD-----------GL-SRT--------PPPV 188 (223)
T ss_pred -------CccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccCchhhh-----------hc-cCC--------CCCC
Confidence 0134999999999999999876 4799999999999765311 00 001 1127
Q ss_pred HHHHHHHHHHhhcCCCC--CccEEE
Q 023515 233 VKDVANAHIQAFEVPSA--NGRYCL 255 (281)
Q Consensus 233 ~~D~a~~i~~~~~~~~~--~g~~~~ 255 (281)
++|+++++.+++..... .|..+.
T Consensus 189 ~~~ia~~~~~l~s~~~~~v~G~~i~ 213 (223)
T PRK05884 189 AAEIARLALFLTTPAARHITGQTLH 213 (223)
T ss_pred HHHHHHHHHHHcCchhhccCCcEEE
Confidence 89999999999875432 454433
|
|
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-21 Score=160.53 Aligned_cols=209 Identities=15% Similarity=0.100 Sum_probs=145.2
Q ss_pred eEEEeCCchHHHHHHHHHHHH----CCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcC-----
Q 023515 11 VVCVTGASGYIASWLVKLLLS----RGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG----- 81 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~----~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~----- 81 (281)
.++||||+++||.+++++|++ .|++|++++|+.+..+.+...........++.++.+|+++.++++++++.
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQLLKALRELP 81 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCHHHHHHHHHHHHhcc
Confidence 589999999999999999997 79999999998765544333222211124688899999999888776641
Q ss_pred ------CcEeEEecccCCC----C----CCCccchhhhhHHHHHHHHHHHhhhCCC-----ccEEEEeccceeeecCCCC
Q 023515 82 ------CDGVCHTASPFYH----D----AKDPQVELLDPAVKGTLNVLNSCAKFPS-----IKRVVLTSSMAAVLNTGKP 142 (281)
Q Consensus 82 ------~d~Vih~a~~~~~----~----~~~~~~~~~~~n~~~~~~l~~~~~~~~~-----~~~~v~~SS~~~~~~~~~~ 142 (281)
.|+||||||.... . ..+.++..+++|+.++..+++.+.+.+. .+++|++||..++.+.+
T Consensus 82 g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~~~~~~~~-- 159 (256)
T TIGR01500 82 RPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAIQPFK-- 159 (256)
T ss_pred ccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCHHhCCCCC--
Confidence 2689999986321 1 1234568999999999999988877522 25899999986653111
Q ss_pred CCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCC--ccHHHHHHHH
Q 023515 143 RTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLN--TSAAAVLSLI 217 (281)
Q Consensus 143 ~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~--~~~~~~~~~~ 217 (281)
....|+.+|.+.+.+++.++.+. |++++++.||.+.++....... .... .....
T Consensus 160 --------------------~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~v~PG~v~T~~~~~~~~~~~~~~-~~~~~ 218 (256)
T TIGR01500 160 --------------------GWALYCAGKAARDMLFQVLALEEKNPNVRVLNYAPGVLDTDMQQQVREESVDPD-MRKGL 218 (256)
T ss_pred --------------------CchHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHhcCChh-HHHHH
Confidence 12349999999999999988764 7999999999998764211000 0000 11111
Q ss_pred hCCCCCCCCCccceeHHHHHHHHHHhhcC
Q 023515 218 KGAQTYPNVTFGWVNVKDVANAHIQAFEV 246 (281)
Q Consensus 218 ~~~~~~~~~~~~~i~~~D~a~~i~~~~~~ 246 (281)
.... ....+..++|+|.++++++++
T Consensus 219 ~~~~----~~~~~~~p~eva~~~~~l~~~ 243 (256)
T TIGR01500 219 QELK----AKGKLVDPKVSAQKLLSLLEK 243 (256)
T ss_pred HHHH----hcCCCCCHHHHHHHHHHHHhc
Confidence 1000 011267999999999999964
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5e-21 Score=157.12 Aligned_cols=205 Identities=20% Similarity=0.244 Sum_probs=147.5
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++++|+||||+|+||.++++.|+++|++|++++|++++...+...... ..++.++++|+++++.+.++++
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSK---YGNIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999999999987544433222111 1357889999999988877664
Q ss_pred -CCcEeEEecccCCCC---CCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCCCCCeeeecCCCC
Q 023515 81 -GCDGVCHTASPFYHD---AKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFS 155 (281)
Q Consensus 81 -~~d~Vih~a~~~~~~---~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~ 155 (281)
++|.+||+++..... ..+.++..++.|+.++.++++.+.+.+ +..++|++||..+..+.. .
T Consensus 80 ~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~---~----------- 145 (238)
T PRK05786 80 NAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMSGIYKAS---P----------- 145 (238)
T ss_pred CCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecchhcccCC---C-----------
Confidence 469999999753211 113345778999999999999988752 235799999975532110 0
Q ss_pred ChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCcccee
Q 023515 156 DPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVN 232 (281)
Q Consensus 156 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 232 (281)
....|+.+|.+.+.+++.++.+. |++++++||+.++++.... ..+... + .....++.
T Consensus 146 -------~~~~Y~~sK~~~~~~~~~~~~~~~~~gi~v~~i~pg~v~~~~~~~------~~~~~~----~---~~~~~~~~ 205 (238)
T PRK05786 146 -------DQLSYAVAKAGLAKAVEILASELLGRGIRVNGIAPTTISGDFEPE------RNWKKL----R---KLGDDMAP 205 (238)
T ss_pred -------CchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCCCCch------hhhhhh----c---cccCCCCC
Confidence 12349999999999998888764 8999999999999875211 011110 0 01123678
Q ss_pred HHHHHHHHHHhhcCCC
Q 023515 233 VKDVANAHIQAFEVPS 248 (281)
Q Consensus 233 ~~D~a~~i~~~~~~~~ 248 (281)
++|+++++++++..+.
T Consensus 206 ~~~va~~~~~~~~~~~ 221 (238)
T PRK05786 206 PEDFAKVIIWLLTDEA 221 (238)
T ss_pred HHHHHHHHHHHhcccc
Confidence 9999999999997643
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.87 E-value=7e-21 Score=156.60 Aligned_cols=206 Identities=15% Similarity=0.117 Sum_probs=143.8
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCC-CCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------C
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDP-NDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------G 81 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~ 81 (281)
|++|||||+|+||++++++|+++|++|+++.|+. .....+..... ....++.++.+|++|++++.++++ .
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQG--ALGFDFRVVEGDVSSFESCKAAVAKVEAELGP 78 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHH--hhCCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 5799999999999999999999999999998842 22221111111 112468899999999888777664 5
Q ss_pred CcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeecCC
Q 023515 82 CDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (281)
Q Consensus 82 ~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~ 153 (281)
+|+|||+||.... ...+.++..+++|+.++..+++.+.+.+ +.+++|++||..+..+..
T Consensus 79 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~iss~~~~~~~~------------- 145 (242)
T TIGR01829 79 IDVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERGWGRIINISSVNGQKGQF------------- 145 (242)
T ss_pred CcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcCCCC-------------
Confidence 8999999986322 1233456778999999988777765431 557899999976543211
Q ss_pred CCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccc
Q 023515 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGW 230 (281)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (281)
....|+.+|.+.+.+++.++++ .|+++++++||.+.++...... ........... ....+
T Consensus 146 ---------~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~~~---~~~~~~~~~~~-----~~~~~ 208 (242)
T TIGR01829 146 ---------GQTNYSAAKAGMIGFTKALAQEGATKGVTVNTISPGYIATDMVMAMR---EDVLNSIVAQI-----PVGRL 208 (242)
T ss_pred ---------CcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCCCcCccccccc---hHHHHHHHhcC-----CCCCC
Confidence 1134999999999998888765 3899999999999987643211 12222222221 12235
Q ss_pred eeHHHHHHHHHHhhcCC
Q 023515 231 VNVKDVANAHIQAFEVP 247 (281)
Q Consensus 231 i~~~D~a~~i~~~~~~~ 247 (281)
..++|+++++.+++...
T Consensus 209 ~~~~~~a~~~~~l~~~~ 225 (242)
T TIGR01829 209 GRPEEIAAAVAFLASEE 225 (242)
T ss_pred cCHHHHHHHHHHHcCch
Confidence 68899999999888654
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5e-21 Score=152.93 Aligned_cols=186 Identities=19% Similarity=0.168 Sum_probs=140.2
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---CCcEeE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---GCDGVC 86 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---~~d~Vi 86 (281)
|+++||||+|+||++++++|+++ ++|++++|+.. .+++|++|.++++++++ ++|+||
T Consensus 1 ~~vlItGas~giG~~la~~l~~~-~~vi~~~r~~~-------------------~~~~D~~~~~~~~~~~~~~~~id~lv 60 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR-HEVITAGRSSG-------------------DVQVDITDPASIRALFEKVGKVDAVV 60 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCCC-------------------ceEecCCChHHHHHHHHhcCCCCEEE
Confidence 37999999999999999999999 99999988642 35789999998888776 689999
Q ss_pred EecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhh
Q 023515 87 HTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVC 160 (281)
Q Consensus 87 h~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 160 (281)
|+||... +...+.++..+++|+.++.++++++.+.+ +..+|+++||..+..+.+
T Consensus 61 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss~~~~~~~~-------------------- 120 (199)
T PRK07578 61 SAAGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSGILSDEPIP-------------------- 120 (199)
T ss_pred ECCCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcccccCCCCC--------------------
Confidence 9998532 12234466888999999999999998752 346799999876543111
Q ss_pred ccCCchhhhhHHHHHHHHHHHHHh--cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeHHHHHH
Q 023515 161 KQSELWYPLSKTLAEDAAWKFAKE--KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVAN 238 (281)
Q Consensus 161 ~~~~~~Y~~sK~~~e~~~~~~~~~--~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~ 238 (281)
....|+.+|++.+.+++.++.+ .|++++.++||.+-++... ..+. ++ ...++.++|+|+
T Consensus 121 --~~~~Y~~sK~a~~~~~~~la~e~~~gi~v~~i~Pg~v~t~~~~---------~~~~------~~--~~~~~~~~~~a~ 181 (199)
T PRK07578 121 --GGASAATVNGALEGFVKAAALELPRGIRINVVSPTVLTESLEK---------YGPF------FP--GFEPVPAARVAL 181 (199)
T ss_pred --CchHHHHHHHHHHHHHHHHHHHccCCeEEEEEcCCcccCchhh---------hhhc------CC--CCCCCCHHHHHH
Confidence 1235999999999999998876 4899999999998654310 0000 01 123689999999
Q ss_pred HHHHhhcCCCCCccEE
Q 023515 239 AHIQAFEVPSANGRYC 254 (281)
Q Consensus 239 ~i~~~~~~~~~~g~~~ 254 (281)
+++.++++...+.+++
T Consensus 182 ~~~~~~~~~~~g~~~~ 197 (199)
T PRK07578 182 AYVRSVEGAQTGEVYK 197 (199)
T ss_pred HHHHHhccceeeEEec
Confidence 9999998654433444
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.2e-21 Score=154.02 Aligned_cols=190 Identities=14% Similarity=0.125 Sum_probs=142.6
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----CCc
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-----GCD 83 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-----~~d 83 (281)
|++++||||+|+||++++++|+++|++|++++|+.++.+.+.. .+++++.+|+++.+.+..+++ ++|
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~~~~--------~~~~~~~~D~~~~~~v~~~~~~~~~~~~d 72 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAALQA--------LGAEALALDVADPASVAGLAWKLDGEALD 72 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHHHHh--------ccceEEEecCCCHHHHHHHHHHhcCCCCC
Confidence 4689999999999999999999999999999998654433221 235689999999988887642 489
Q ss_pred EeEEecccCCC-------CCCCccchhhhhHHHHHHHHHHHhhhCC--CccEEEEeccceeeecCCCCCCCCeeeecCCC
Q 023515 84 GVCHTASPFYH-------DAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWF 154 (281)
Q Consensus 84 ~Vih~a~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~ 154 (281)
+|||+++.... ...+.++..+++|+.++.++++++.+.+ ...++|++||..+.++....
T Consensus 73 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~------------ 140 (222)
T PRK06953 73 AAVYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSRMGSIGDATG------------ 140 (222)
T ss_pred EEEECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCcccccccccC------------
Confidence 99999987421 1234467899999999999999998743 23579999997665532100
Q ss_pred CChhhhccCCchhhhhHHHHHHHHHHHHHhc-CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeH
Q 023515 155 SDPEVCKQSELWYPLSKTLAEDAAWKFAKEK-SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNV 233 (281)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 233 (281)
. ....|+.+|.+.+.+++.++.++ +++++.++||.+.++.... ...+..
T Consensus 141 -~------~~~~Y~~sK~a~~~~~~~~~~~~~~i~v~~v~Pg~i~t~~~~~-----------------------~~~~~~ 190 (222)
T PRK06953 141 -T------TGWLYRASKAALNDALRAASLQARHATCIALHPGWVRTDMGGA-----------------------QAALDP 190 (222)
T ss_pred -C------CccccHHhHHHHHHHHHHHhhhccCcEEEEECCCeeecCCCCC-----------------------CCCCCH
Confidence 0 01249999999999999988765 7899999999998865211 113577
Q ss_pred HHHHHHHHHhhcCCC
Q 023515 234 KDVANAHIQAFEVPS 248 (281)
Q Consensus 234 ~D~a~~i~~~~~~~~ 248 (281)
++.++.+..++....
T Consensus 191 ~~~~~~~~~~~~~~~ 205 (222)
T PRK06953 191 AQSVAGMRRVIAQAT 205 (222)
T ss_pred HHHHHHHHHHHHhcC
Confidence 888888888776543
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.1e-21 Score=172.84 Aligned_cols=209 Identities=16% Similarity=0.113 Sum_probs=151.5
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
.++|+++||||+++||++++++|+++|++|++++|+.+....+.... ..++.++++|+++++++.++++
T Consensus 3 ~~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (520)
T PRK06484 3 AQSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSL-----GPDHHALAMDVSDEAQIREGFEQLHREF 77 (520)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceeEEEeccCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999999999999865543332221 1357789999999988877764
Q ss_pred -CCcEeEEecccCC-------CCCCCccchhhhhHHHHHHHHHHHhhhCC---Cc-cEEEEeccceeeecCCCCCCCCee
Q 023515 81 -GCDGVCHTASPFY-------HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SI-KRVVLTSSMAAVLNTGKPRTPDVV 148 (281)
Q Consensus 81 -~~d~Vih~a~~~~-------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~-~~~v~~SS~~~~~~~~~~~~~~~~ 148 (281)
++|++|||||... ....+.++..+++|+.++..+++++.+.+ +. .++|++||..+..+.+
T Consensus 78 g~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~~~~~~~-------- 149 (520)
T PRK06484 78 GRIDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGAGLVALP-------- 149 (520)
T ss_pred CCCCEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcccCCCCC--------
Confidence 5899999998621 12234567899999999999999999863 22 3899999987664221
Q ss_pred eecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCC
Q 023515 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (281)
Q Consensus 149 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (281)
....|+.+|++.+.+++.++.++ +++++.++||.+.++.................... +
T Consensus 150 --------------~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~---~- 211 (520)
T PRK06484 150 --------------KRTAYSASKAAVISLTRSLACEWAAKGIRVNAVLPGYVRTQMVAELERAGKLDPSAVRSRI---P- 211 (520)
T ss_pred --------------CCchHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCcCchhhhhhcccchhhhHHHHhcC---C-
Confidence 12359999999999999988764 89999999999987753211100000011111111 1
Q ss_pred CCccceeHHHHHHHHHHhhcCC
Q 023515 226 VTFGWVNVKDVANAHIQAFEVP 247 (281)
Q Consensus 226 ~~~~~i~~~D~a~~i~~~~~~~ 247 (281)
...+..++|+++++++++...
T Consensus 212 -~~~~~~~~~va~~v~~l~~~~ 232 (520)
T PRK06484 212 -LGRLGRPEEIAEAVFFLASDQ 232 (520)
T ss_pred -CCCCcCHHHHHHHHHHHhCcc
Confidence 112568999999999998754
|
|
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-20 Score=153.27 Aligned_cols=203 Identities=17% Similarity=0.166 Sum_probs=144.7
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------CC
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------GC 82 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~ 82 (281)
|+++||||+++||++++++|. +|++|++++|+.++.+.+.+.....+ ...+.++++|++|+++++++++ ++
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 78 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDLRQRG-ATSVHVLSFDAQDLDTHRELVKQTQELAGEI 78 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcc-CCceEEEEcccCCHHHHHHHHHHHHHhcCCC
Confidence 579999999999999999998 59999999998765544433222111 1247889999999988877654 68
Q ss_pred cEeEEecccCCCC-----CCCccchhhhhHHHHHHHHHHHhhhCC----CccEEEEeccceeeecCCCCCCCCeeeecCC
Q 023515 83 DGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKFP----SIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (281)
Q Consensus 83 d~Vih~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~ 153 (281)
|++|||||..... ..+.+.+..++|+.+..++++.+.+.+ ..+++|++||..+..+.+
T Consensus 79 d~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~~------------- 145 (246)
T PRK05599 79 SLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGWRARR------------- 145 (246)
T ss_pred CEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEeccccccCCc-------------
Confidence 9999999974321 122234567889999988877765432 236899999986653111
Q ss_pred CCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccc
Q 023515 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGW 230 (281)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (281)
....|+.+|++.+.+++.++.+. |++++++.||.+.++...... + .. ..
T Consensus 146 ---------~~~~Y~asKaa~~~~~~~la~el~~~~I~v~~v~PG~v~T~~~~~~~--------------~----~~-~~ 197 (246)
T PRK05599 146 ---------ANYVYGSTKAGLDAFCQGLADSLHGSHVRLIIARPGFVIGSMTTGMK--------------P----AP-MS 197 (246)
T ss_pred ---------CCcchhhHHHHHHHHHHHHHHHhcCCCceEEEecCCcccchhhcCCC--------------C----CC-CC
Confidence 12349999999999999988864 799999999999876421100 0 00 02
Q ss_pred eeHHHHHHHHHHhhcCCCCCccEEE
Q 023515 231 VNVKDVANAHIQAFEVPSANGRYCL 255 (281)
Q Consensus 231 i~~~D~a~~i~~~~~~~~~~g~~~~ 255 (281)
..++|+|+++++++.+++....+..
T Consensus 198 ~~pe~~a~~~~~~~~~~~~~~~~~~ 222 (246)
T PRK05599 198 VYPRDVAAAVVSAITSSKRSTTLWI 222 (246)
T ss_pred CCHHHHHHHHHHHHhcCCCCceEEe
Confidence 5799999999999998654334433
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=155.54 Aligned_cols=190 Identities=16% Similarity=0.105 Sum_probs=134.1
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
.+++++++||||+|+||++++++|+++|++|++++|+..+.. ... .. ....++.+|++|.+++.+.+.++|++
T Consensus 11 ~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~--~~~--~~---~~~~~~~~D~~~~~~~~~~~~~iDil 83 (245)
T PRK12367 11 TWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNS--ESN--DE---SPNEWIKWECGKEESLDKQLASLDVL 83 (245)
T ss_pred hhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhh--hhh--cc---CCCeEEEeeCCCHHHHHHhcCCCCEE
Confidence 456899999999999999999999999999999998762211 111 11 11256889999999998888899999
Q ss_pred EEecccCC--CCCCCccchhhhhHHHHHHHHHHHhhhCCC------ccEEEEeccceeeecCCCCCCCCeeeecCCCCCh
Q 023515 86 CHTASPFY--HDAKDPQVELLDPAVKGTLNVLNSCAKFPS------IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDP 157 (281)
Q Consensus 86 ih~a~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~ 157 (281)
|||||... ....+.++..+++|+.++.++++++.+.+. ...++..||.+.... +
T Consensus 84 VnnAG~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~g~~iiv~ss~a~~~~---~--------------- 145 (245)
T PRK12367 84 ILNHGINPGGRQDPENINKALEINALSSWRLLELFEDIALNNNSQIPKEIWVNTSEAEIQP---A--------------- 145 (245)
T ss_pred EECCccCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCeEEEEEecccccCC---C---------------
Confidence 99998632 223445678999999999999999987531 123444455433210 0
Q ss_pred hhhccCCchhhhhHHHHHHHH---HHHHH---hcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccce
Q 023515 158 EVCKQSELWYPLSKTLAEDAA---WKFAK---EKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWV 231 (281)
Q Consensus 158 ~~~~~~~~~Y~~sK~~~e~~~---~~~~~---~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 231 (281)
....|++||++.+.+. +++.. ..++.+..+.||.+.++.. ....+
T Consensus 146 -----~~~~Y~aSKaal~~~~~l~~~l~~e~~~~~i~v~~~~pg~~~t~~~------------------------~~~~~ 196 (245)
T PRK12367 146 -----LSPSYEISKRLIGQLVSLKKNLLDKNERKKLIIRKLILGPFRSELN------------------------PIGIM 196 (245)
T ss_pred -----CCchhHHHHHHHHHHHHHHHHHHHhhcccccEEEEecCCCcccccC------------------------ccCCC
Confidence 0124999999986543 22222 3478888888888754421 01146
Q ss_pred eHHHHHHHHHHhhcCCCC
Q 023515 232 NVKDVANAHIQAFEVPSA 249 (281)
Q Consensus 232 ~~~D~a~~i~~~~~~~~~ 249 (281)
.++|+|+.++.++++++.
T Consensus 197 ~~~~vA~~i~~~~~~~~~ 214 (245)
T PRK12367 197 SADFVAKQILDQANLGLY 214 (245)
T ss_pred CHHHHHHHHHHHHhcCCc
Confidence 899999999999987654
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.3e-21 Score=161.75 Aligned_cols=239 Identities=18% Similarity=0.172 Sum_probs=152.6
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
++++++||||+++||++++++|+++| ++|++++|+.++...+.+... .....+.++.+|+++.++++++++
T Consensus 2 ~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~--~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 79 (314)
T TIGR01289 2 QKPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLG--MPKDSYTIMHLDLGSLDSVRQFVQQFRESG 79 (314)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhc--CCCCeEEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 36799999999999999999999999 999999998654433322221 112467889999999988777654
Q ss_pred -CCcEeEEecccCCC------CCCCccchhhhhHHHHHHHHHHHhhhCCC-----ccEEEEeccceeeecCCCCCCCCee
Q 023515 81 -GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFPS-----IKRVVLTSSMAAVLNTGKPRTPDVV 148 (281)
Q Consensus 81 -~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-----~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (281)
++|++|||||.... ...+.++..+++|+.++..+++++.+.+. .++||++||..++........+. +
T Consensus 80 ~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~~~~~~~~~~~~~~-~ 158 (314)
T TIGR01289 80 RPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAGNVPP-K 158 (314)
T ss_pred CCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecCccccccCCCcCCC-c
Confidence 58999999996321 12345678899999999999988887421 36999999987653210000000 0
Q ss_pred eecCC-------CCCh-----hhhccCCchhhhhHHHHHHHHHHHHHh----cCCcEEEEcCCccc-CCCCCCCCCccHH
Q 023515 149 VDETW-------FSDP-----EVCKQSELWYPLSKTLAEDAAWKFAKE----KSIDLVTINPAMVI-GPLLQPTLNTSAA 211 (281)
Q Consensus 149 ~~e~~-------~~~~-----~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~g~~~~~irp~~v~-g~~~~~~~~~~~~ 211 (281)
.+.++ +..+ ..+......|+.||++...+.++++++ .|+.+++++||.|. ++...........
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~T~l~~~~~~~~~~ 238 (314)
T TIGR01289 159 ANLGDLSGLAAGFKAPIAMIDGKEFKGAKAYKDSKVCNMLTVRELHRRFHDETGITFASLYPGCIADTGLFREHVPLFRT 238 (314)
T ss_pred ccccccccccccCCCcccccCCCCcchhhhHHHhHHHHHHHHHHHHHHhccCCCeEEEEecCCcccCCcccccccHHHHH
Confidence 00000 0000 000011234999999998888888765 37999999999995 4432211111101
Q ss_pred HHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCccEEE
Q 023515 212 AVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCL 255 (281)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~ 255 (281)
.+....... ...+..+++.|+.++.++.... .+|.|+.
T Consensus 239 ~~~~~~~~~------~~~~~~~~~~a~~l~~~~~~~~~~~~g~~~~ 278 (314)
T TIGR01289 239 LFPPFQKYI------TKGYVSEEEAGERLAQVVSDPKLKKSGVYWS 278 (314)
T ss_pred HHHHHHHHH------hccccchhhhhhhhHHhhcCcccCCCceeee
Confidence 111111100 1125789999999999887543 3466654
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-20 Score=152.19 Aligned_cols=202 Identities=12% Similarity=0.076 Sum_probs=158.1
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
.++++||||||++++|++++.+|+++|..+++.+.+.+......+..+.. +.+...++|+++++++....+
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~---g~~~~y~cdis~~eei~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKI---GEAKAYTCDISDREEIYRLAKKVKKEV 112 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhc---CceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 46899999999999999999999999999999999887666655544332 268999999999988777664
Q ss_pred -CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 -GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 -~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
.+|++|||||... +..++..+..+++|+.|.....++..+.| +.+++|.++|+.+..+..+
T Consensus 113 G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~GHIV~IaS~aG~~g~~g---------- 182 (300)
T KOG1201|consen 113 GDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNNGHIVTIASVAGLFGPAG---------- 182 (300)
T ss_pred CCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCCceEEEehhhhcccCCcc----------
Confidence 7899999999633 23455667999999999999999998863 5679999999988774321
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc------CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCC
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK------SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~------g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (281)
...|++||+++..+.+++..+. |++.+.+.|+.+-++..... .+ -.
T Consensus 183 ------------l~~YcaSK~a~vGfhesL~~EL~~~~~~~IktTlv~P~~i~Tgmf~~~------------~~----~~ 234 (300)
T KOG1201|consen 183 ------------LADYCASKFAAVGFHESLSMELRALGKDGIKTTLVCPYFINTGMFDGA------------TP----FP 234 (300)
T ss_pred ------------chhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEEEeeeeccccccCCC------------CC----Cc
Confidence 2349999999999988887542 79999999999865432210 00 12
Q ss_pred CCccceeHHHHHHHHHHhhcCCCC
Q 023515 226 VTFGWVNVKDVANAHIQAFEVPSA 249 (281)
Q Consensus 226 ~~~~~i~~~D~a~~i~~~~~~~~~ 249 (281)
.....+.++.+|+-++.++.....
T Consensus 235 ~l~P~L~p~~va~~Iv~ai~~n~~ 258 (300)
T KOG1201|consen 235 TLAPLLEPEYVAKRIVEAILTNQA 258 (300)
T ss_pred cccCCCCHHHHHHHHHHHHHcCCc
Confidence 345678999999999999987654
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.5e-21 Score=177.69 Aligned_cols=201 Identities=19% Similarity=0.172 Sum_probs=150.9
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++|+++||||||+||++++++|+++|++|++++|+++....+....... ..++.++++|++|.+++.++++
T Consensus 368 ~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 445 (657)
T PRK07201 368 PLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAK--GGTAHAYTCDLTDSAAVDHTVKDILAE 445 (657)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHHHh
Confidence 356889999999999999999999999999999999875544333222111 2468899999999998888776
Q ss_pred --CCcEeEEecccCCC-----CC--CCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCee
Q 023515 81 --GCDGVCHTASPFYH-----DA--KDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVV 148 (281)
Q Consensus 81 --~~d~Vih~a~~~~~-----~~--~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (281)
++|++|||||.... .. .+.++..+++|+.++.++++++.+.+ +.++||++||.+++.+.+
T Consensus 446 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------- 517 (657)
T PRK07201 446 HGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRFGHVVNVSSIGVQTNAP-------- 517 (657)
T ss_pred cCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCCCC--------
Confidence 68999999986321 11 12456889999999999988887642 456899999987764211
Q ss_pred eecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCC
Q 023515 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (281)
Q Consensus 149 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (281)
....|+.+|++.+.+++.++.++ |+++++++||.|.++...+... +
T Consensus 518 --------------~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~T~~~~~~~~---------------~-- 566 (657)
T PRK07201 518 --------------RFSAYVASKAALDAFSDVAASETLSDGITFTTIHMPLVRTPMIAPTKR---------------Y-- 566 (657)
T ss_pred --------------CcchHHHHHHHHHHHHHHHHHHHHhhCCcEEEEECCcCcccccCcccc---------------c--
Confidence 12349999999999999988764 8999999999999876432110 0
Q ss_pred CCccceeHHHHHHHHHHhhcCC
Q 023515 226 VTFGWVNVKDVANAHIQAFEVP 247 (281)
Q Consensus 226 ~~~~~i~~~D~a~~i~~~~~~~ 247 (281)
.....+.++++|+.++..+.+.
T Consensus 567 ~~~~~~~~~~~a~~i~~~~~~~ 588 (657)
T PRK07201 567 NNVPTISPEEAADMVVRAIVEK 588 (657)
T ss_pred cCCCCCCHHHHHHHHHHHHHhC
Confidence 0122568999999999887654
|
|
| >KOG2774 consensus NAD dependent epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-20 Score=146.25 Aligned_cols=249 Identities=20% Similarity=0.218 Sum_probs=185.7
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHC-CCE-EEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--CCc
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSR-GYT-VKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCD 83 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~-g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d 83 (281)
+..+|||||+-|.+|..++..|..+ |.+ |+.-+........+ ..-.++..|+.|...+++++- ++|
T Consensus 43 ~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KPp~~V~----------~~GPyIy~DILD~K~L~eIVVn~RId 112 (366)
T KOG2774|consen 43 KAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKPPANVT----------DVGPYIYLDILDQKSLEEIVVNKRID 112 (366)
T ss_pred CCCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccCCchhhc----------ccCCchhhhhhccccHHHhhcccccc
Confidence 4679999999999999999999876 754 55544444333221 234678899999999999764 799
Q ss_pred EeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccC
Q 023515 84 GVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQS 163 (281)
Q Consensus 84 ~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 163 (281)
.+||..+..+...+.+.....++|+.|.-|+++.|+++ +. ++..-||+++++ +..++.+...++-. . +
T Consensus 113 WL~HfSALLSAvGE~NVpLA~~VNI~GvHNil~vAa~~-kL-~iFVPSTIGAFG-PtSPRNPTPdltIQ---R------P 180 (366)
T KOG2774|consen 113 WLVHFSALLSAVGETNVPLALQVNIRGVHNILQVAAKH-KL-KVFVPSTIGAFG-PTSPRNPTPDLTIQ---R------P 180 (366)
T ss_pred eeeeHHHHHHHhcccCCceeeeecchhhhHHHHHHHHc-Ce-eEeecccccccC-CCCCCCCCCCeeee---c------C
Confidence 99999887665556666688999999999999999998 66 577788887765 33344333332222 2 2
Q ss_pred CchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCC--CCCCCccHHHHHHHHhCC----CCCCCCCccceeHHHHH
Q 023515 164 ELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLL--QPTLNTSAAAVLSLIKGA----QTYPNVTFGWVNVKDVA 237 (281)
Q Consensus 164 ~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~D~a 237 (281)
.+.||.||..+|.+-+.+..++|+.+-++|++.+..... ....+.....++.+++.. ...++.+..+.|.+||-
T Consensus 181 RTIYGVSKVHAEL~GEy~~hrFg~dfr~~rfPg~is~~~pgggttdya~A~f~~Al~~gk~tCylrpdtrlpmmy~~dc~ 260 (366)
T KOG2774|consen 181 RTIYGVSKVHAELLGEYFNHRFGVDFRSMRFPGIISATKPGGGTTDYAIAIFYDALQKGKHTCYLRPDTRLPMMYDTDCM 260 (366)
T ss_pred ceeechhHHHHHHHHHHHHhhcCccceecccCcccccCCCCCCcchhHHHHHHHHHHcCCcccccCCCccCceeehHHHH
Confidence 355999999999999888888999999999777765321 111222345566655443 34478888999999999
Q ss_pred HHHHHhhcCCCC---CccEEEecCCCCHHHHHHHHHHhCCCCCC
Q 023515 238 NAHIQAFEVPSA---NGRYCLVERVSHYSEIVNIIRELYPAFQL 278 (281)
Q Consensus 238 ~~i~~~~~~~~~---~g~~~~~~~~~t~~e~~~~i~~~~~~~~~ 278 (281)
++++..+..+.. ..+||+.+-..|-.|++..+.+.++.+.+
T Consensus 261 ~~~~~~~~a~~~~lkrr~ynvt~~sftpee~~~~~~~~~p~~~i 304 (366)
T KOG2774|consen 261 ASVIQLLAADSQSLKRRTYNVTGFSFTPEEIADAIRRVMPGFEI 304 (366)
T ss_pred HHHHHHHhCCHHHhhhheeeeceeccCHHHHHHHHHhhCCCcee
Confidence 999999886653 23899999999999999999999987643
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.9e-21 Score=154.73 Aligned_cols=167 Identities=18% Similarity=0.199 Sum_probs=127.4
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----CCc
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-----GCD 83 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-----~~d 83 (281)
|++++||||+|+||++++++|+++|++|++++|++.+...+... .++.+..+|++|+++++++++ ++|
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~D~~d~~~~~~~~~~~~~~~id 73 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQAL-------PGVHIEKLDMNDPASLDQLLQRLQGQRFD 73 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHhc-------cccceEEcCCCCHHHHHHHHHHhhcCCCC
Confidence 46899999999999999999999999999999987654433221 357788899999988877766 589
Q ss_pred EeEEecccCCC-------CCCCccchhhhhHHHHHHHHHHHhhhCC--CccEEEEeccceeeecCCCCCCCCeeeecCCC
Q 023515 84 GVCHTASPFYH-------DAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWF 154 (281)
Q Consensus 84 ~Vih~a~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~ 154 (281)
+|||+||.... ...+.++..+++|+.++.++++++.+.+ +...++++||..+..+.. +
T Consensus 74 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss~~g~~~~~----~--------- 140 (225)
T PRK08177 74 LLFVNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSSQLGSVELP----D--------- 140 (225)
T ss_pred EEEEcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcCCEEEEEccCccccccC----C---------
Confidence 99999986422 1223456788999999999999998753 235788888854332100 0
Q ss_pred CChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCC
Q 023515 155 SDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPL 201 (281)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~ 201 (281)
......|+.+|++.+.+++.++.++ +++++.++||.+.++.
T Consensus 141 ------~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~i~PG~i~t~~ 184 (225)
T PRK08177 141 ------GGEMPLYKASKAALNSMTRSFVAELGEPTLTVLSMHPGWVKTDM 184 (225)
T ss_pred ------CCCccchHHHHHHHHHHHHHHHHHhhcCCeEEEEEcCCceecCC
Confidence 0012349999999999999988763 7899999999998775
|
|
| >KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.7e-20 Score=152.32 Aligned_cols=229 Identities=19% Similarity=0.178 Sum_probs=159.4
Q ss_pred hccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhh-ccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLA-LDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 5 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
.++++|+++||||+.+||+++|++|++.|.+|++.+|+.+..+....... ......++..+.+|+++.++.+++++
T Consensus 4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~ 83 (270)
T KOG0725|consen 4 GRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAV 83 (270)
T ss_pred ccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHH
Confidence 45779999999999999999999999999999999999876544333222 22223578999999998877666654
Q ss_pred -----CCcEeEEecccCC------CCCCCccchhhhhHHH-HHHHHHHHhhhC---CCccEEEEeccceeeecCCCCCCC
Q 023515 81 -----GCDGVCHTASPFY------HDAKDPQVELLDPAVK-GTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTP 145 (281)
Q Consensus 81 -----~~d~Vih~a~~~~------~~~~~~~~~~~~~n~~-~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~ 145 (281)
++|++|||||... +...+.|+..+++|+. +...+.+++.++ .+...++++||...+.....
T Consensus 84 ~~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~ss~~~~~~~~~---- 159 (270)
T KOG0725|consen 84 EKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGGSIVNISSVAGVGPGPG---- 159 (270)
T ss_pred HHhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCceEEEEeccccccCCCC----
Confidence 6899999998622 2345667899999999 577777777765 23457899998766542110
Q ss_pred CeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCC-ccHHHHHHHHhCCC
Q 023515 146 DVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLN-TSAAAVLSLIKGAQ 221 (281)
Q Consensus 146 ~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~-~~~~~~~~~~~~~~ 221 (281)
....|+.+|.+.+++.+.++.++ |+++.++.||.+.++....... .....+.+......
T Consensus 160 -----------------~~~~Y~~sK~al~~ltr~lA~El~~~gIRvN~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~ 222 (270)
T KOG0725|consen 160 -----------------SGVAYGVSKAALLQLTRSLAKELAKHGIRVNSVSPGLVKTSLRAAGLDDGEMEEFKEATDSKG 222 (270)
T ss_pred -----------------CcccchhHHHHHHHHHHHHHHHHhhcCcEEEEeecCcEeCCccccccccchhhHHhhhhcccc
Confidence 00249999999999999998764 8999999999999886111100 00111221100111
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCCCC--CccEEEe
Q 023515 222 TYPNVTFGWVNVKDVANAHIQAFEVPSA--NGRYCLV 256 (281)
Q Consensus 222 ~~~~~~~~~i~~~D~a~~i~~~~~~~~~--~g~~~~~ 256 (281)
..+. -.+..++|++..+.+++..... .|+-++.
T Consensus 223 ~~p~--gr~g~~~eva~~~~fla~~~asyitG~~i~v 257 (270)
T KOG0725|consen 223 AVPL--GRVGTPEEVAEAAAFLASDDASYITGQTIIV 257 (270)
T ss_pred cccc--CCccCHHHHHHhHHhhcCcccccccCCEEEE
Confidence 1111 1256999999999999987533 4544443
|
|
| >PLN02730 enoyl-[acyl-carrier-protein] reductase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-19 Score=153.38 Aligned_cols=222 Identities=12% Similarity=0.036 Sum_probs=149.5
Q ss_pred cCCCeEEEeCC--chHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhh---------ccC--CCCcEEEEEcCC--CC
Q 023515 7 AAGKVVCVTGA--SGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLA---------LDG--ASERLQLFKANL--LE 71 (281)
Q Consensus 7 ~~~~~ilItGa--tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~---------~~~--~~~~~~~~~~D~--~~ 71 (281)
+++|+++|||| +.+||+++++.|+++|.+|++ .|..+..+.+..... ... .......+.+|+ ++
T Consensus 7 l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 85 (303)
T PLN02730 7 LRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAVFDT 85 (303)
T ss_pred CCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeecceecCc
Confidence 67999999999 899999999999999999988 665444333322111 000 001245778898 44
Q ss_pred cC------------------cHHHHhc-------CCcEeEEecccC-------CCCCCCccchhhhhHHHHHHHHHHHhh
Q 023515 72 EG------------------SFDSIVD-------GCDGVCHTASPF-------YHDAKDPQVELLDPAVKGTLNVLNSCA 119 (281)
Q Consensus 72 ~~------------------~~~~~~~-------~~d~Vih~a~~~-------~~~~~~~~~~~~~~n~~~~~~l~~~~~ 119 (281)
++ +++++++ ++|++|||||.. .+...+.|+..+++|+.++..+++++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~~~~ 165 (303)
T PLN02730 86 PEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLLQHFG 165 (303)
T ss_pred cccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44 4555554 589999999631 122345678999999999999999999
Q ss_pred hCCC-ccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc----CCcEEEEcC
Q 023515 120 KFPS-IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK----SIDLVTINP 194 (281)
Q Consensus 120 ~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----g~~~~~irp 194 (281)
+.+. ..++|++||..+..+.+. ....|+.+|++.+.+.+.++.++ |++++.|.|
T Consensus 166 p~m~~~G~II~isS~a~~~~~p~---------------------~~~~Y~asKaAl~~l~~~la~El~~~~gIrVn~V~P 224 (303)
T PLN02730 166 PIMNPGGASISLTYIASERIIPG---------------------YGGGMSSAKAALESDTRVLAFEAGRKYKIRVNTISA 224 (303)
T ss_pred HHHhcCCEEEEEechhhcCCCCC---------------------CchhhHHHHHHHHHHHHHHHHHhCcCCCeEEEEEee
Confidence 8642 378999999866432110 01249999999999999998763 689999999
Q ss_pred CcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCCC--CccEEEe
Q 023515 195 AMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPSA--NGRYCLV 256 (281)
Q Consensus 195 ~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~~--~g~~~~~ 256 (281)
|.+.++.... ............... + ...+..++|++.++++++..... .|.....
T Consensus 225 G~v~T~~~~~-~~~~~~~~~~~~~~~---p--l~r~~~peevA~~~~fLaS~~a~~itG~~l~v 282 (303)
T PLN02730 225 GPLGSRAAKA-IGFIDDMIEYSYANA---P--LQKELTADEVGNAAAFLASPLASAITGATIYV 282 (303)
T ss_pred CCccCchhhc-ccccHHHHHHHHhcC---C--CCCCcCHHHHHHHHHHHhCccccCccCCEEEE
Confidence 9998875432 111111111111111 1 12356899999999999975432 4544433
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.2e-20 Score=160.24 Aligned_cols=190 Identities=16% Similarity=0.084 Sum_probs=133.3
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+++|+|+||||+|+||++++++|+++|++|++++|+.++... ..... ..++..+.+|++|.+.+.+.+.++|++|
T Consensus 176 l~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~---~~~~~--~~~v~~v~~Dvsd~~~v~~~l~~IDiLI 250 (406)
T PRK07424 176 LKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITL---EINGE--DLPVKTLHWQVGQEAALAELLEKVDILI 250 (406)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH---HHhhc--CCCeEEEEeeCCCHHHHHHHhCCCCEEE
Confidence 468999999999999999999999999999999987643221 11111 1246788999999999999999999999
Q ss_pred EecccCC--CCCCCccchhhhhHHHHHHHHHHHhhhCCC-------ccEEEEeccceeeecCCCCCCCCeeeecCCCCCh
Q 023515 87 HTASPFY--HDAKDPQVELLDPAVKGTLNVLNSCAKFPS-------IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDP 157 (281)
Q Consensus 87 h~a~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-------~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~ 157 (281)
||||... +...+.++..+++|+.++.++++++.+.+. ...+|++|+ +... . +
T Consensus 251 nnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~~~~~~iiVn~Ss-a~~~-~--~--------------- 311 (406)
T PRK07424 251 INHGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRDKATKEVWVNTSE-AEVN-P--A--------------- 311 (406)
T ss_pred ECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEcc-cccc-C--C---------------
Confidence 9998632 223334568899999999999999987421 123455554 2211 0 0
Q ss_pred hhhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeHHHHH
Q 023515 158 EVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVA 237 (281)
Q Consensus 158 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a 237 (281)
....|++||++.+.+......+.++.+..+.||.+.++. . ....+.+||+|
T Consensus 312 -----~~~~Y~ASKaAl~~l~~l~~~~~~~~I~~i~~gp~~t~~-~-----------------------~~~~~spe~vA 362 (406)
T PRK07424 312 -----FSPLYELSKRALGDLVTLRRLDAPCVVRKLILGPFKSNL-N-----------------------PIGVMSADWVA 362 (406)
T ss_pred -----CchHHHHHHHHHHHHHHHHHhCCCCceEEEEeCCCcCCC-C-----------------------cCCCCCHHHHH
Confidence 012399999999987643333345556666665543221 0 01246899999
Q ss_pred HHHHHhhcCCCC
Q 023515 238 NAHIQAFEVPSA 249 (281)
Q Consensus 238 ~~i~~~~~~~~~ 249 (281)
+.++.++++++.
T Consensus 363 ~~il~~i~~~~~ 374 (406)
T PRK07424 363 KQILKLAKRDFR 374 (406)
T ss_pred HHHHHHHHCCCC
Confidence 999999987764
|
|
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.6e-19 Score=145.91 Aligned_cols=202 Identities=15% Similarity=0.114 Sum_probs=142.2
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---CCcE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---GCDG 84 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---~~d~ 84 (281)
|+|+||||+|+||++++++|+++| +.|....|+.... . ...++.++++|+++.++++.+.+ ++|+
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~-~---------~~~~~~~~~~Dls~~~~~~~~~~~~~~id~ 70 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD-F---------QHDNVQWHALDVTDEAEIKQLSEQFTQLDW 70 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc-c---------ccCceEEEEecCCCHHHHHHHHHhcCCCCE
Confidence 479999999999999999999985 5666666644321 0 12468899999999887766544 7899
Q ss_pred eEEecccCCCC-----------CCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 85 VCHTASPFYHD-----------AKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 85 Vih~a~~~~~~-----------~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
||||||..... ..+.++..+++|+.++..+++.+.+.+ +.++++++||..+....
T Consensus 71 li~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~i~~iss~~~~~~~----------- 139 (235)
T PRK09009 71 LINCVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSESAKFAVISAKVGSISD----------- 139 (235)
T ss_pred EEECCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCCceEEEEeeccccccc-----------
Confidence 99999974321 112345788999999999999998853 23579999874321100
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh-----cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE-----KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (281)
...+ ....|+.+|++.+.+++.++.+ .+++++.+.||.+.++..... ....
T Consensus 140 ~~~~--------~~~~Y~asK~a~~~~~~~la~e~~~~~~~i~v~~v~PG~v~t~~~~~~-----------~~~~----- 195 (235)
T PRK09009 140 NRLG--------GWYSYRASKAALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTALSKPF-----------QQNV----- 195 (235)
T ss_pred CCCC--------CcchhhhhHHHHHHHHHHHHHHhhcccCCeEEEEEcccceecCCCcch-----------hhcc-----
Confidence 0000 1234999999999999998865 378899999999988763211 0111
Q ss_pred CCccceeHHHHHHHHHHhhcCCC--CCccEEEe
Q 023515 226 VTFGWVNVKDVANAHIQAFEVPS--ANGRYCLV 256 (281)
Q Consensus 226 ~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~ 256 (281)
....++.++|+|+++++++.... ..|.+...
T Consensus 196 ~~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~ 228 (235)
T PRK09009 196 PKGKLFTPEYVAQCLLGIIANATPAQSGSFLAY 228 (235)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCChhhCCcEEee
Confidence 11226799999999999998764 35655443
|
|
| >KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.2e-20 Score=144.79 Aligned_cols=255 Identities=16% Similarity=0.134 Sum_probs=182.6
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC--cchhhhhhhccC--CCCcEEEEEcCCCCcCcHHHHhc--CC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND--PKKTRHLLALDG--ASERLQLFKANLLEEGSFDSIVD--GC 82 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~--~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~--~~ 82 (281)
.|..||||-||.=|++|++.|+.+||+|.++.|+.+. +.+++++..++. .........+|++|...+.+++. .+
T Consensus 28 rkvALITGItGQDGSYLaEfLL~KgYeVHGiiRRsSsFNT~RIeHlY~nP~~h~~~~mkLHYgDmTDss~L~k~I~~ikP 107 (376)
T KOG1372|consen 28 RKVALITGITGQDGSYLAEFLLSKGYEVHGIIRRSSSFNTARIEHLYSNPHTHNGASMKLHYGDMTDSSCLIKLISTIKP 107 (376)
T ss_pred ceEEEEecccCCCchHHHHHHHhCCceeeEEEeeccccchhhhhhhhcCchhcccceeEEeeccccchHHHHHHHhccCc
Confidence 4579999999999999999999999999999997654 455666665442 23568889999999999999887 67
Q ss_pred cEeEEecccCCC-CCCCccchhhhhHHHHHHHHHHHhhhCC--CccEEEEeccceeeecCCCCCCCCeeeecCCCCChhh
Q 023515 83 DGVCHTASPFYH-DAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEV 159 (281)
Q Consensus 83 d~Vih~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~ 159 (281)
+-|+|+|+...- ..-+-.+...++...|+.+|+++.+... ..-+|-..|| +..||.. ...+.+|.+|..|.
T Consensus 108 tEiYnLaAQSHVkvSFdlpeYTAeVdavGtLRlLdAi~~c~l~~~VrfYQAst-SElyGkv----~e~PQsE~TPFyPR- 181 (376)
T KOG1372|consen 108 TEVYNLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDAIRACRLTEKVRFYQAST-SELYGKV----QEIPQSETTPFYPR- 181 (376)
T ss_pred hhhhhhhhhcceEEEeecccceeeccchhhhhHHHHHHhcCcccceeEEeccc-Hhhcccc----cCCCcccCCCCCCC-
Confidence 899999985211 0112224777889999999999999861 1125666666 5666432 34455777776654
Q ss_pred hccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCC--ccHHHHHHHHhCCC---CCC--CCCcccee
Q 023515 160 CKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLN--TSAAAVLSLIKGAQ---TYP--NVTFGWVN 232 (281)
Q Consensus 160 ~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~--~~~~~~~~~~~~~~---~~~--~~~~~~i~ 232 (281)
++|+++|..+-..+-.+.+.+++-.+.=-..+--.|+.....- .+...+.++.-|.+ .+| +..+||.|
T Consensus 182 -----SPYa~aKmy~~WivvNyREAYnmfAcNGILFNHESPRRGenFVTRKItRsvakI~~gqqe~~~LGNL~a~RDWGh 256 (376)
T KOG1372|consen 182 -----SPYAAAKMYGYWIVVNYREAYNMFACNGILFNHESPRRGENFVTRKITRSVAKISLGQQEKIELGNLSALRDWGH 256 (376)
T ss_pred -----ChhHHhhhhheEEEEEhHHhhcceeeccEeecCCCCccccchhhHHHHHHHHHhhhcceeeEEecchhhhcccch
Confidence 7799999999988888888887654433333444455433211 12233334434432 234 67899999
Q ss_pred HHHHHHHHHHhhcCCCCCccEEEecCCCCHHHHHHHHHHhCC
Q 023515 233 VKDVANAHIQAFEVPSANGRYCLVERVSHYSEIVNIIRELYP 274 (281)
Q Consensus 233 ~~D~a~~i~~~~~~~~~~g~~~~~~~~~t~~e~~~~i~~~~~ 274 (281)
..|.+++++.++++.++....+..|+..|.+|+++.-+..+|
T Consensus 257 A~dYVEAMW~mLQ~d~PdDfViATge~hsVrEF~~~aF~~ig 298 (376)
T KOG1372|consen 257 AGDYVEAMWLMLQQDSPDDFVIATGEQHSVREFCNLAFAEIG 298 (376)
T ss_pred hHHHHHHHHHHHhcCCCCceEEecCCcccHHHHHHHHHHhhC
Confidence 999999999999988765444556899999999998888776
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.8e-20 Score=148.86 Aligned_cols=197 Identities=12% Similarity=0.037 Sum_probs=140.5
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++++++||||+++||++++++|+++|++|+++.|+.++.+.+.+..... ..++..+++|++++++++++++
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSAL--TDNVYSFQLKDFSQESIRHLFDAIEQQF 80 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc--CCCeEEEEccCCCHHHHHHHHHHHHHHh
Confidence 56899999999999999999999999999999999876544433322111 2357788899999988876653
Q ss_pred --CCcEeEEecccCC---CC---CCCccchhhhhHHHHHHHHHHHhhhCC----CccEEEEeccceeeecCCCCCCCCee
Q 023515 81 --GCDGVCHTASPFY---HD---AKDPQVELLDPAVKGTLNVLNSCAKFP----SIKRVVLTSSMAAVLNTGKPRTPDVV 148 (281)
Q Consensus 81 --~~d~Vih~a~~~~---~~---~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (281)
++|++|||||... .. ..+.+.+.+++|+.++..+++.+.+++ +.+.+|++||.....
T Consensus 81 g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~----------- 149 (227)
T PRK08862 81 NRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVISHDDHQ----------- 149 (227)
T ss_pred CCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEecCCCCC-----------
Confidence 6899999997421 11 122344677889999888887776542 246899999854321
Q ss_pred eecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCC
Q 023515 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (281)
Q Consensus 149 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (281)
....|+.+|++.+.+.+.++.+ +|++++.|.||.+.++... ....+..+
T Consensus 150 --------------~~~~Y~asKaal~~~~~~la~el~~~~Irvn~v~PG~i~t~~~~-----~~~~~~~~--------- 201 (227)
T PRK08862 150 --------------DLTGVESSNALVSGFTHSWAKELTPFNIRVGGVVPSIFSANGEL-----DAVHWAEI--------- 201 (227)
T ss_pred --------------CcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcCcCCCcc-----CHHHHHHH---------
Confidence 0134999999999999998875 4899999999999876311 11111111
Q ss_pred CCccceeHHHHHHHHHHhhcCCCCCc
Q 023515 226 VTFGWVNVKDVANAHIQAFEVPSANG 251 (281)
Q Consensus 226 ~~~~~i~~~D~a~~i~~~~~~~~~~g 251 (281)
.+|++.+..+++.+..-.|
T Consensus 202 -------~~~~~~~~~~l~~~~~~tg 220 (227)
T PRK08862 202 -------QDELIRNTEYIVANEYFSG 220 (227)
T ss_pred -------HHHHHhheeEEEecccccc
Confidence 1788888888887443333
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-19 Score=161.89 Aligned_cols=206 Identities=17% Similarity=0.079 Sum_probs=146.1
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++++++||||+|+||+++++.|.++|++|++++|.... +.+...... .+..++++|++|.+++.++++
T Consensus 208 ~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~-~~l~~~~~~----~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 282 (450)
T PRK08261 208 LAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAG-EALAAVANR----VGGTALALDITAPDAPARIAEHLAERH 282 (450)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccH-HHHHHHHHH----cCCeEEEEeCCCHHHHHHHHHHHHHhC
Confidence 457899999999999999999999999999999885322 222222111 134678899999988777665
Q ss_pred -CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 -~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
++|+|||+||.... ...+.++..+++|+.++.++++++.+.+ +..+||++||..++.+..
T Consensus 283 g~id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~~~~~g~~----------- 351 (450)
T PRK08261 283 GGLDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSISGIAGNR----------- 351 (450)
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCCCC-----------
Confidence 58999999996432 2334567889999999999999998741 236899999987765321
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCc
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (281)
....|+.+|.+.+.+++.++.+ .|++++++.||.+.++.... .. ....+...... ...
T Consensus 352 -----------~~~~Y~asKaal~~~~~~la~el~~~gi~v~~v~PG~i~t~~~~~-~~---~~~~~~~~~~~----~l~ 412 (450)
T PRK08261 352 -----------GQTNYAASKAGVIGLVQALAPLLAERGITINAVAPGFIETQMTAA-IP---FATREAGRRMN----SLQ 412 (450)
T ss_pred -----------CChHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeCcCcchhhhc-cc---hhHHHHHhhcC----CcC
Confidence 1234999999999998888765 48999999999987654221 11 11111111111 112
Q ss_pred cceeHHHHHHHHHHhhcCC
Q 023515 229 GWVNVKDVANAHIQAFEVP 247 (281)
Q Consensus 229 ~~i~~~D~a~~i~~~~~~~ 247 (281)
....++|+|+++.+++...
T Consensus 413 ~~~~p~dva~~~~~l~s~~ 431 (450)
T PRK08261 413 QGGLPVDVAETIAWLASPA 431 (450)
T ss_pred CCCCHHHHHHHHHHHhChh
Confidence 2346889999999998753
|
|
| >KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.2e-20 Score=138.49 Aligned_cols=210 Identities=17% Similarity=0.147 Sum_probs=153.9
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
.+-+.++||||+.+||++++..|.++|++|.+.+++...++....... + ..+...+.+|+.+..+++..++
T Consensus 12 ~~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~--g-~~~h~aF~~DVS~a~~v~~~l~e~~k~~ 88 (256)
T KOG1200|consen 12 LMSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLG--G-YGDHSAFSCDVSKAHDVQNTLEEMEKSL 88 (256)
T ss_pred HhcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcC--C-CCccceeeeccCcHHHHHHHHHHHHHhc
Confidence 456789999999999999999999999999999998876555443322 1 1356677999999888777554
Q ss_pred -CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhC--C---CccEEEEeccceeeecCCCCCCCCeee
Q 023515 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF--P---SIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (281)
Q Consensus 81 -~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~--~---~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (281)
.+++++||||+..+ ..+++|+..+.+|+.|++.+.+++.+. + ..-++|++||+-+.-|+-+
T Consensus 89 g~psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIVGkiGN~G-------- 160 (256)
T KOG1200|consen 89 GTPSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIVGKIGNFG-------- 160 (256)
T ss_pred CCCcEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhhccccccc--------
Confidence 68999999997443 346778899999999999999998875 1 2237999999865543321
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCC
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (281)
++-|+++|...-.+.+..+++ .++++.++.||.|-+|..... .+....++...- |.
T Consensus 161 --------------QtnYAAsK~GvIgftktaArEla~knIrvN~VlPGFI~tpMT~~m---p~~v~~ki~~~i---Pm- 219 (256)
T KOG1200|consen 161 --------------QTNYAASKGGVIGFTKTAARELARKNIRVNVVLPGFIATPMTEAM---PPKVLDKILGMI---PM- 219 (256)
T ss_pred --------------chhhhhhcCceeeeeHHHHHHHhhcCceEeEeccccccChhhhhc---CHHHHHHHHccC---Cc-
Confidence 234999997766666655554 389999999999998863321 233444444332 11
Q ss_pred CccceeHHHHHHHHHHhhcCCCC
Q 023515 227 TFGWVNVKDVANAHIQAFEVPSA 249 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~~ 249 (281)
..+-..+|+|..++++....++
T Consensus 220 -gr~G~~EevA~~V~fLAS~~ss 241 (256)
T KOG1200|consen 220 -GRLGEAEEVANLVLFLASDASS 241 (256)
T ss_pred -cccCCHHHHHHHHHHHhccccc
Confidence 2255899999999999965443
|
|
| >PLN00015 protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-19 Score=153.83 Aligned_cols=235 Identities=17% Similarity=0.133 Sum_probs=146.9
Q ss_pred EEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------CCcE
Q 023515 13 CVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------GCDG 84 (281)
Q Consensus 13 lItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~ 84 (281)
+||||+++||.+++++|+++| ++|++++|+.++...+..... ....++.++++|++|.++++++++ ++|+
T Consensus 1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~l~--~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~ 78 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAG--MPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDV 78 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhc--CCCCeEEEEEecCCCHHHHHHHHHHHHhcCCCCCE
Confidence 699999999999999999999 999999987654433322221 112467889999999988777664 5899
Q ss_pred eEEecccCCC------CCCCccchhhhhHHHHHHHHHHHhhhCC---C--ccEEEEeccceeeecCCCCC-CCC---ee-
Q 023515 85 VCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFP---S--IKRVVLTSSMAAVLNTGKPR-TPD---VV- 148 (281)
Q Consensus 85 Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~--~~~~v~~SS~~~~~~~~~~~-~~~---~~- 148 (281)
+|||||.... ...+.++..+++|+.|+..+++.+.+.+ + .+++|++||..+........ .+. ..
T Consensus 79 lInnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~~~~~ 158 (308)
T PLN00015 79 LVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 158 (308)
T ss_pred EEECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccCCCccchhhh
Confidence 9999986321 1234567899999999999988888752 2 36899999986542100000 000 00
Q ss_pred ------eecCCCCC--hhhhccCCchhhhhHHHHHHHHHHHHHhc----CCcEEEEcCCccc-CCCCCCCCCccHHHHHH
Q 023515 149 ------VDETWFSD--PEVCKQSELWYPLSKTLAEDAAWKFAKEK----SIDLVTINPAMVI-GPLLQPTLNTSAAAVLS 215 (281)
Q Consensus 149 ------~~e~~~~~--~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----g~~~~~irp~~v~-g~~~~~~~~~~~~~~~~ 215 (281)
.++..... ..........|+.||.+.+.+++.+++++ |++++++.||.|. ++....... .......
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~aY~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~~~~~~~~-~~~~~~~ 237 (308)
T PLN00015 159 RGLAGGLNGLNSSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIP-LFRLLFP 237 (308)
T ss_pred hhhhcccCCccchhhccccCCcHHHHHhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCccccccccH-HHHHHHH
Confidence 00000000 00000012349999999887778777653 7999999999995 443221111 1110000
Q ss_pred HHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCccEEE
Q 023515 216 LIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCL 255 (281)
Q Consensus 216 ~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~ 255 (281)
.....+ ...+..+++.|+.+++++.... ..|.|+.
T Consensus 238 ~~~~~~-----~~~~~~pe~~a~~~~~l~~~~~~~~~G~~~~ 274 (308)
T PLN00015 238 PFQKYI-----TKGYVSEEEAGKRLAQVVSDPSLTKSGVYWS 274 (308)
T ss_pred HHHHHH-----hcccccHHHhhhhhhhhccccccCCCccccc
Confidence 001000 0125689999999999887533 3566653
|
|
| >KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.2e-20 Score=136.82 Aligned_cols=217 Identities=19% Similarity=0.148 Sum_probs=160.9
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---CCc
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---GCD 83 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---~~d 83 (281)
+.++.|++||+.-+||++++.+|++.|.+|+.+.|.+.....+.++ .+..+..+++|+.+-+.+.+++- .+|
T Consensus 5 laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~L~sLV~e-----~p~~I~Pi~~Dls~wea~~~~l~~v~pid 79 (245)
T KOG1207|consen 5 LAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSLVKE-----TPSLIIPIVGDLSAWEALFKLLVPVFPID 79 (245)
T ss_pred ccceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHHHHHHHhh-----CCcceeeeEecccHHHHHHHhhcccCchh
Confidence 5689999999999999999999999999999999998765554443 12458999999988666666654 579
Q ss_pred EeEEeccc-----CCCCCCCccchhhhhHHHHHHHHHHHhhh----CCCccEEEEeccceeeecCCCCCCCCeeeecCCC
Q 023515 84 GVCHTASP-----FYHDAKDPQVELLDPAVKGTLNVLNSCAK----FPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWF 154 (281)
Q Consensus 84 ~Vih~a~~-----~~~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~ 154 (281)
.++||||. +....++.+++.|++|+.++.++.+...+ ....+.+|++||.++...
T Consensus 80 gLVNNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNvSSqas~R~---------------- 143 (245)
T KOG1207|consen 80 GLVNNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNVSSQASIRP---------------- 143 (245)
T ss_pred hhhccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEecchhcccc----------------
Confidence 99999985 33334566678999999999999888444 224467999999877541
Q ss_pred CChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccce
Q 023515 155 SDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWV 231 (281)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 231 (281)
...++.|+++|.+.+.+.+.++-+. ++++..+.|..|.+......+. .+.--+.++.+. ....|.
T Consensus 144 ------~~nHtvYcatKaALDmlTk~lAlELGp~kIRVNsVNPTVVmT~MG~dnWS-DP~K~k~mL~ri-----Pl~rFa 211 (245)
T KOG1207|consen 144 ------LDNHTVYCATKAALDMLTKCLALELGPQKIRVNSVNPTVVMTDMGRDNWS-DPDKKKKMLDRI-----PLKRFA 211 (245)
T ss_pred ------cCCceEEeecHHHHHHHHHHHHHhhCcceeEeeccCCeEEEecccccccC-CchhccchhhhC-----chhhhh
Confidence 1134669999999999999998876 4789999999999876444332 222222233322 123388
Q ss_pred eHHHHHHHHHHhhcCCCC--CccEEEe
Q 023515 232 NVKDVANAHIQAFEVPSA--NGRYCLV 256 (281)
Q Consensus 232 ~~~D~a~~i~~~~~~~~~--~g~~~~~ 256 (281)
.+++++.++.+++...++ .|.....
T Consensus 212 EV~eVVnA~lfLLSd~ssmttGstlpv 238 (245)
T KOG1207|consen 212 EVDEVVNAVLFLLSDNSSMTTGSTLPV 238 (245)
T ss_pred HHHHHHhhheeeeecCcCcccCceeee
Confidence 999999999999987654 4443333
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-19 Score=147.57 Aligned_cols=218 Identities=27% Similarity=0.346 Sum_probs=145.7
Q ss_pred EEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEeccc
Q 023515 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTASP 91 (281)
Q Consensus 12 ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a~~ 91 (281)
|+|+||||.+|+++++.|++.+++|+++.|+..+. ....+.. .+++.+.+|+.|.+++.++++++|.||.+.+.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~-~~~~l~~-----~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSD-RAQQLQA-----LGAEVVEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHH-HHHHHHH-----TTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchh-hhhhhhc-----ccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence 79999999999999999999999999999987321 1112211 35788899999999999999999999988764
Q ss_pred CCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchhhhhH
Q 023515 92 FYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSK 171 (281)
Q Consensus 92 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK 171 (281)
.. ..-+....+++++|++. ++++||+ ||....+. +.....|. .+.-..|
T Consensus 75 ~~-----------~~~~~~~~~li~Aa~~a-gVk~~v~-ss~~~~~~------------~~~~~~p~------~~~~~~k 123 (233)
T PF05368_consen 75 SH-----------PSELEQQKNLIDAAKAA-GVKHFVP-SSFGADYD------------ESSGSEPE------IPHFDQK 123 (233)
T ss_dssp SC-----------CCHHHHHHHHHHHHHHH-T-SEEEE-SEESSGTT------------TTTTSTTH------HHHHHHH
T ss_pred ch-----------hhhhhhhhhHHHhhhcc-ccceEEE-EEeccccc------------cccccccc------chhhhhh
Confidence 32 12345668899999998 8999986 44322210 00001111 1133467
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC-----CCCCCCCccce-eHHHHHHHHHHhhc
Q 023515 172 TLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA-----QTYPNVTFGWV-NVKDVANAHIQAFE 245 (281)
Q Consensus 172 ~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i-~~~D~a~~i~~~~~ 245 (281)
...|+.+ ++.+++++++|||..+....... .......... ...++....++ ..+|+++++..++.
T Consensus 124 ~~ie~~l----~~~~i~~t~i~~g~f~e~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvg~~va~il~ 194 (233)
T PF05368_consen 124 AEIEEYL----RESGIPYTIIRPGFFMENLLPPF-----APVVDIKKSKDVVTLPGPGNQKAVPVTDTRDVGRAVAAILL 194 (233)
T ss_dssp HHHHHHH----HHCTSEBEEEEE-EEHHHHHTTT-----HHTTCSCCTSSEEEEETTSTSEEEEEEHHHHHHHHHHHHHH
T ss_pred hhhhhhh----hhccccceeccccchhhhhhhhh-----cccccccccceEEEEccCCCccccccccHHHHHHHHHHHHc
Confidence 7777777 44599999999998764221100 0000000110 01134445564 99999999999999
Q ss_pred CCCCC--c-cEEEecCCCCHHHHHHHHHHhCCC
Q 023515 246 VPSAN--G-RYCLVERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 246 ~~~~~--g-~~~~~~~~~t~~e~~~~i~~~~~~ 275 (281)
++... + .+.+.++.+|+.|+++.+.+.+|+
T Consensus 195 ~p~~~~~~~~~~~~~~~~t~~eia~~~s~~~G~ 227 (233)
T PF05368_consen 195 DPEKHNNGKTIFLAGETLTYNEIAAILSKVLGK 227 (233)
T ss_dssp SGGGTTEEEEEEEGGGEEEHHHHHHHHHHHHTS
T ss_pred ChHHhcCCEEEEeCCCCCCHHHHHHHHHHHHCC
Confidence 87654 3 556667889999999999999885
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=136.36 Aligned_cols=165 Identities=19% Similarity=0.245 Sum_probs=123.9
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhh-hhhccCCCCcEEEEEcCCCCcCcHHHHhc-------
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRH-LLALDGASERLQLFKANLLEEGSFDSIVD------- 80 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------- 80 (281)
++++||||+|+||.+++++|+++|+ .|+++.|++........ .........++.++.+|+++++.+.++++
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACDVADRAALAAALAAIPARLG 80 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4799999999999999999999996 68888887654432211 01111112467889999999888777654
Q ss_pred CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCC
Q 023515 81 GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFS 155 (281)
Q Consensus 81 ~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~ 155 (281)
.+|.|||+|+... ....+.++..+++|+.++.++++++++. +.+++|++||..+.++..
T Consensus 81 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~ii~~ss~~~~~~~~--------------- 144 (180)
T smart00822 81 PLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDL-PLDFFVLFSSVAGVLGNP--------------- 144 (180)
T ss_pred CeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccC-CcceEEEEccHHHhcCCC---------------
Confidence 3699999998532 2223445688999999999999999886 778999999987665321
Q ss_pred ChhhhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCccc
Q 023515 156 DPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVI 198 (281)
Q Consensus 156 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~ 198 (281)
....|+.+|.+.+.+++.+ +..+++++.+.||.+-
T Consensus 145 -------~~~~y~~sk~~~~~~~~~~-~~~~~~~~~~~~g~~~ 179 (180)
T smart00822 145 -------GQANYAAANAFLDALAAHR-RARGLPATSINWGAWA 179 (180)
T ss_pred -------CchhhHHHHHHHHHHHHHH-HhcCCceEEEeecccc
Confidence 1134999999999999666 4568999999998764
|
It uses NADPH to reduce the keto group to a hydroxy group. |
| >KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.7e-18 Score=144.41 Aligned_cols=230 Identities=18% Similarity=0.120 Sum_probs=160.2
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+.+++++||||+.+||.+++++|+.+|.+|+..+|+..+.+.............++.++++|+++..++....+
T Consensus 32 ~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~~ 111 (314)
T KOG1208|consen 32 DLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKKK 111 (314)
T ss_pred cCCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHhc
Confidence 356789999999999999999999999999999999986655544433333334678999999999988887664
Q ss_pred --CCcEeEEecccCCC---CCCCccchhhhhHHHHHHHHHHHhhhCCC---ccEEEEeccceeeecCCCCCCCCeeeecC
Q 023515 81 --GCDGVCHTASPFYH---DAKDPQVELLDPAVKGTLNVLNSCAKFPS---IKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (281)
Q Consensus 81 --~~d~Vih~a~~~~~---~~~~~~~~~~~~n~~~~~~l~~~~~~~~~---~~~~v~~SS~~~~~~~~~~~~~~~~~~e~ 152 (281)
..|++|||||+... ...+..+..+.+|..|++.|.+.+.+.++ ..|+|++||... . .. ........|.
T Consensus 112 ~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~~RIV~vsS~~~-~-~~--~~~~~l~~~~ 187 (314)
T KOG1208|consen 112 EGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAPSRIVNVSSILG-G-GK--IDLKDLSGEK 187 (314)
T ss_pred CCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCCCCEEEEcCccc-c-Cc--cchhhccchh
Confidence 67999999997332 23466789999999999999999987522 269999999754 1 10 0111111222
Q ss_pred CCCChhhhccCCchhhhhHHHHHHHHHHHHHhc--CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccc
Q 023515 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK--SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGW 230 (281)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (281)
...... ...|+.||.+...+..+++++. |+.+..+-||.+.++.... .......+.+..... -+
T Consensus 188 ~~~~~~-----~~~Y~~SKla~~l~~~eL~k~l~~~V~~~~~hPG~v~t~~l~r-~~~~~~~l~~~l~~~--------~~ 253 (314)
T KOG1208|consen 188 AKLYSS-----DAAYALSKLANVLLANELAKRLKKGVTTYSVHPGVVKTTGLSR-VNLLLRLLAKKLSWP--------LT 253 (314)
T ss_pred ccCccc-----hhHHHHhHHHHHHHHHHHHHHhhcCceEEEECCCcccccceec-chHHHHHHHHHHHHH--------hc
Confidence 111110 1239999999999999999876 6999999999998874333 111112122221111 01
Q ss_pred eeHHHHHHHHHHhhcCCCC---CccE
Q 023515 231 VNVKDVANAHIQAFEVPSA---NGRY 253 (281)
Q Consensus 231 i~~~D~a~~i~~~~~~~~~---~g~~ 253 (281)
-.++.-|+..+.++.++.. .|.|
T Consensus 254 ks~~~ga~t~~~~a~~p~~~~~sg~y 279 (314)
T KOG1208|consen 254 KSPEQGAATTCYAALSPELEGVSGKY 279 (314)
T ss_pred cCHHHHhhheehhccCccccCccccc
Confidence 2677888888888877643 4556
|
|
| >PRK06300 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.9e-18 Score=142.70 Aligned_cols=226 Identities=13% Similarity=0.063 Sum_probs=140.8
Q ss_pred hccCCCeEEEeCCc--hHHHHHHHHHHHHCCCEEEEEEcCC--------CCcchhhhhhh-ccCCC---CcEEEEEcCCC
Q 023515 5 AAAAGKVVCVTGAS--GYIASWLVKLLLSRGYTVKASVRDP--------NDPKKTRHLLA-LDGAS---ERLQLFKANLL 70 (281)
Q Consensus 5 ~~~~~~~ilItGat--G~iG~~l~~~L~~~g~~V~~~~r~~--------~~~~~~~~~~~-~~~~~---~~~~~~~~D~~ 70 (281)
..+++|+++||||+ .+||+++++.|+++|++|++.+|.+ ........... ..+.. ..+..+..|+.
T Consensus 4 ~~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~ 83 (299)
T PRK06300 4 IDLTGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGTWVPIYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDASFD 83 (299)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEeccchhhhhhhhcccccccccccccccchhhhhhHHHhhhhcC
Confidence 34679999999995 9999999999999999999976531 00000000000 00000 00111223333
Q ss_pred CcC------------------cHHHHhc-------CCcEeEEecccCC-------CCCCCccchhhhhHHHHHHHHHHHh
Q 023515 71 EEG------------------SFDSIVD-------GCDGVCHTASPFY-------HDAKDPQVELLDPAVKGTLNVLNSC 118 (281)
Q Consensus 71 ~~~------------------~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~~~~~~~~n~~~~~~l~~~~ 118 (281)
+.+ +++++++ ++|++|||||... +...+.|++.+++|+.++.++++++
T Consensus 84 ~~~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~a~ 163 (299)
T PRK06300 84 TPEDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLLSHF 163 (299)
T ss_pred CCEEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHHHHH
Confidence 332 2344443 6899999997421 2223557789999999999999999
Q ss_pred hhCCC-ccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc----CCcEEEEc
Q 023515 119 AKFPS-IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK----SIDLVTIN 193 (281)
Q Consensus 119 ~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----g~~~~~ir 193 (281)
.+.+. .+++|++||..+..+.+ . ....|+.+|.+.+.+++.++.++ |++++.|.
T Consensus 164 ~p~m~~~G~ii~iss~~~~~~~p--~-------------------~~~~Y~asKaAl~~lt~~la~el~~~~gIrVn~V~ 222 (299)
T PRK06300 164 GPIMNPGGSTISLTYLASMRAVP--G-------------------YGGGMSSAKAALESDTKVLAWEAGRRWGIRVNTIS 222 (299)
T ss_pred HHHhhcCCeEEEEeehhhcCcCC--C-------------------ccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 98742 35799999876643211 0 01249999999999999998753 79999999
Q ss_pred CCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCccEEEec
Q 023515 194 PAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVE 257 (281)
Q Consensus 194 p~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~ 257 (281)
||.+.++.... ............. .. + ...+..++|++.++.+++.... ..|..+..+
T Consensus 223 PG~v~T~~~~~-~~~~~~~~~~~~~-~~--p--~~r~~~peevA~~v~~L~s~~~~~itG~~i~vd 282 (299)
T PRK06300 223 AGPLASRAGKA-IGFIERMVDYYQD-WA--P--LPEPMEAEQVGAAAAFLVSPLASAITGETLYVD 282 (299)
T ss_pred eCCccChhhhc-ccccHHHHHHHHh-cC--C--CCCCcCHHHHHHHHHHHhCccccCCCCCEEEEC
Confidence 99998875321 1111111111111 11 1 1235689999999999987543 345444333
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.3e-19 Score=138.28 Aligned_cols=150 Identities=20% Similarity=0.223 Sum_probs=116.8
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcC--CCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRG-YTVKASVRD--PNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
|+++||||++.||++++++|+++| +.|+++.|+ .+....+..... ....++.++++|+++.++++.+++
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELK--APGAKITFIECDLSDPESIRALIEEVIKRF 78 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHH--HTTSEEEEEESETTSHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccc--cccccccccccccccccccccccccccccc
Confidence 579999999999999999999996 577888887 222222222122 223689999999999988888775
Q ss_pred -CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCC
Q 023515 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWF 154 (281)
Q Consensus 81 -~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~ 154 (281)
.+|++|||||.... ...+.+++.+++|+.+...+.+++.+. +.+++|++||..+..+.+
T Consensus 79 ~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~-~~g~iv~~sS~~~~~~~~-------------- 143 (167)
T PF00106_consen 79 GPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLPQ-GGGKIVNISSIAGVRGSP-------------- 143 (167)
T ss_dssp SSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHH-TTEEEEEEEEGGGTSSST--------------
T ss_pred ccccccccccccccccccccccchhhhhccccccceeeeeeehheec-cccceEEecchhhccCCC--------------
Confidence 68999999997442 123456799999999999999999994 678999999987765221
Q ss_pred CChhhhccCCchhhhhHHHHHHHHHHHHHh
Q 023515 155 SDPEVCKQSELWYPLSKTLAEDAAWKFAKE 184 (281)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~ 184 (281)
....|+.+|.+.+.+++.++++
T Consensus 144 --------~~~~Y~askaal~~~~~~la~e 165 (167)
T PF00106_consen 144 --------GMSAYSASKAALRGLTQSLAAE 165 (167)
T ss_dssp --------TBHHHHHHHHHHHHHHHHHHHH
T ss_pred --------CChhHHHHHHHHHHHHHHHHHh
Confidence 1235999999999999999876
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-18 Score=131.92 Aligned_cols=166 Identities=14% Similarity=0.158 Sum_probs=127.8
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+.+.+||||||+.+||.+++++|++.|.+|++..|+.......... ...+....+|+.|.+..+++++
T Consensus 3 ~tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~------~p~~~t~v~Dv~d~~~~~~lvewLkk~~ 76 (245)
T COG3967 3 TTGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAE------NPEIHTEVCDVADRDSRRELVEWLKKEY 76 (245)
T ss_pred ccCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhc------CcchheeeecccchhhHHHHHHHHHhhC
Confidence 5689999999999999999999999999999999997654443322 1467888999999987777664
Q ss_pred -CCcEeEEecccCCC---C----CCCccchhhhhHHHHHHHHHHHhhhC---CCccEEEEeccceeeecCCCCCCCCeee
Q 023515 81 -GCDGVCHTASPFYH---D----AKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (281)
Q Consensus 81 -~~d~Vih~a~~~~~---~----~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (281)
..+++|||||.... . ..+..++-+++|+.++.+|..+..++ .+..-+|++||.-++-... .
T Consensus 77 P~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~IInVSSGLafvPm~--~------ 148 (245)
T COG3967 77 PNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEATIINVSSGLAFVPMA--S------ 148 (245)
T ss_pred CchheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCceEEEeccccccCccc--c------
Confidence 67999999996221 1 11223466788999999999999986 2345799999977664111 1
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCC
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGP 200 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~ 200 (281)
...|+++|++...+..++.++ .+++++-+-|+.|.++
T Consensus 149 --------------~PvYcaTKAaiHsyt~aLR~Qlk~t~veVIE~~PP~V~t~ 188 (245)
T COG3967 149 --------------TPVYCATKAAIHSYTLALREQLKDTSVEVIELAPPLVDTT 188 (245)
T ss_pred --------------cccchhhHHHHHHHHHHHHHHhhhcceEEEEecCCceecC
Confidence 123999999999887777654 4889999999999875
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.7e-17 Score=135.39 Aligned_cols=215 Identities=20% Similarity=0.209 Sum_probs=160.8
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEec
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a 89 (281)
++||||||||++|++++++|+++|++|+++.|+++....+. .+++...+|+.++..+...++++|.++++.
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~---------~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~ 71 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA---------GGVEVVLGDLRDPKSLVAGAKGVDGVLLIS 71 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc---------CCcEEEEeccCCHhHHHHHhccccEEEEEe
Confidence 47999999999999999999999999999999988766633 368999999999999999999999999988
Q ss_pred ccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchhhh
Q 023515 90 SPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPL 169 (281)
Q Consensus 90 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~ 169 (281)
+... ... ...........+..+.+. . +.++++++|...+.-. ....|..
T Consensus 72 ~~~~-~~~----~~~~~~~~~~~~~a~~a~-~-~~~~~~~~s~~~~~~~------------------------~~~~~~~ 120 (275)
T COG0702 72 GLLD-GSD----AFRAVQVTAVVRAAEAAG-A-GVKHGVSLSVLGADAA------------------------SPSALAR 120 (275)
T ss_pred cccc-ccc----chhHHHHHHHHHHHHHhc-C-CceEEEEeccCCCCCC------------------------CccHHHH
Confidence 6533 111 122334455555555555 2 5778999988654210 1135999
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHH-hCCC--CCCCCCccceeHHHHHHHHHHhhcC
Q 023515 170 SKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLI-KGAQ--TYPNVTFGWVNVKDVANAHIQAFEV 246 (281)
Q Consensus 170 sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~i~~~D~a~~i~~~~~~ 246 (281)
+|..+|..+. ..|++.+++|+..+|...... ...... .+.+ ..+....+++..+|++.++...+..
T Consensus 121 ~~~~~e~~l~----~sg~~~t~lr~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~~~d~a~~~~~~l~~ 189 (275)
T COG0702 121 AKAAVEAALR----SSGIPYTTLRRAAFYLGAGAA-------FIEAAEAAGLPVIPRGIGRLSPIAVDDVAEALAAALDA 189 (275)
T ss_pred HHHHHHHHHH----hcCCCeEEEecCeeeeccchh-------HHHHHHhhCCceecCCCCceeeeEHHHHHHHHHHHhcC
Confidence 9999999984 469999999977777544221 122222 2222 2234478899999999999999987
Q ss_pred CCCC-ccEEEec-CCCCHHHHHHHHHHhCCC
Q 023515 247 PSAN-GRYCLVE-RVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 247 ~~~~-g~~~~~~-~~~t~~e~~~~i~~~~~~ 275 (281)
+... ..|.+.+ +..+..+....+.+..+.
T Consensus 190 ~~~~~~~~~l~g~~~~~~~~~~~~l~~~~gr 220 (275)
T COG0702 190 PATAGRTYELAGPEALTLAELASGLDYTIGR 220 (275)
T ss_pred CcccCcEEEccCCceecHHHHHHHHHHHhCC
Confidence 7544 4788876 689999999999998875
|
|
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.9e-19 Score=144.14 Aligned_cols=212 Identities=19% Similarity=0.147 Sum_probs=149.0
Q ss_pred CCc--hHHHHHHHHHHHHCCCEEEEEEcCCCCc-chhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--------CCcE
Q 023515 16 GAS--GYIASWLVKLLLSRGYTVKASVRDPNDP-KKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--------GCDG 84 (281)
Q Consensus 16 Gat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--------~~d~ 84 (281)
|++ ++||+++++.|+++|++|++++|+.++. ..+.++....+ ..++++|++++++++++++ ++|+
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~----~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~ 76 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYG----AEVIQCDLSDEESVEALFDEAVERFGGRIDI 76 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTT----SEEEESCTTSHHHHHHHHHHHHHHHCSSESE
T ss_pred CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcC----CceEeecCcchHHHHHHHHHHHhhcCCCeEE
Confidence 566 9999999999999999999999998753 22333332222 3369999999988877753 6899
Q ss_pred eEEecccCCC---------CCCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCCCCCeeeecCCC
Q 023515 85 VCHTASPFYH---------DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWF 154 (281)
Q Consensus 85 Vih~a~~~~~---------~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~ 154 (281)
+||+++.... ...+.|+..+++|+.++..+++++.+.+ +.+.+|++||.......+
T Consensus 77 lV~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~~~~~~~~-------------- 142 (241)
T PF13561_consen 77 LVNNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSIAAQRPMP-------------- 142 (241)
T ss_dssp EEEEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEGGGTSBST--------------
T ss_pred EEecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccchhhcccCc--------------
Confidence 9999986432 1124567899999999999999998753 246899999976543111
Q ss_pred CChhhhccCCchhhhhHHHHHHHHHHHHHh----cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccc
Q 023515 155 SDPEVCKQSELWYPLSKTLAEDAAWKFAKE----KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGW 230 (281)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (281)
....|+.+|.+.+.+++.++.+ +|+++++|.||.+.++..... .............. + ...+
T Consensus 143 --------~~~~y~~sKaal~~l~r~lA~el~~~~gIrVN~V~pG~i~t~~~~~~-~~~~~~~~~~~~~~-p----l~r~ 208 (241)
T PF13561_consen 143 --------GYSAYSASKAALEGLTRSLAKELAPKKGIRVNAVSPGPIETPMTERI-PGNEEFLEELKKRI-P----LGRL 208 (241)
T ss_dssp --------TTHHHHHHHHHHHHHHHHHHHHHGGHGTEEEEEEEESSBSSHHHHHH-HTHHHHHHHHHHHS-T----TSSH
T ss_pred --------cchhhHHHHHHHHHHHHHHHHHhccccCeeeeeecccceeccchhcc-ccccchhhhhhhhh-c----cCCC
Confidence 1235999999999999998874 479999999999987641100 00111222222211 1 2226
Q ss_pred eeHHHHHHHHHHhhcCCC--CCccEEEecCC
Q 023515 231 VNVKDVANAHIQAFEVPS--ANGRYCLVERV 259 (281)
Q Consensus 231 i~~~D~a~~i~~~~~~~~--~~g~~~~~~~~ 259 (281)
..++|+|.++.+++.... -.|+.+..++.
T Consensus 209 ~~~~evA~~v~fL~s~~a~~itG~~i~vDGG 239 (241)
T PF13561_consen 209 GTPEEVANAVLFLASDAASYITGQVIPVDGG 239 (241)
T ss_dssp BEHHHHHHHHHHHHSGGGTTGTSEEEEESTT
T ss_pred cCHHHHHHHHHHHhCccccCccCCeEEECCC
Confidence 799999999999998653 36766665544
|
... |
| >COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3e-17 Score=135.76 Aligned_cols=211 Identities=20% Similarity=0.185 Sum_probs=144.0
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC--cchhhhhhhccCCC-CcEEEEEcCCCC-cCcHHHHhc--
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND--PKKTRHLLALDGAS-ERLQLFKANLLE-EGSFDSIVD-- 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~--~~~~~~~~~~~~~~-~~~~~~~~D~~~-~~~~~~~~~-- 80 (281)
+++|+|+||||+++||+++++.|+++|++|+++.|+... .+.+..... ... ..+.+..+|+++ .+++..+++
T Consensus 3 ~~~~~ilITGas~GiG~aia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Dvs~~~~~v~~~~~~~ 80 (251)
T COG1028 3 LSGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIK--EAGGGRAAAVAADVSDDEESVEALVAAA 80 (251)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEcCCCchhhHHHHHHHHH--hcCCCcEEEEEecCCCCHHHHHHHHHHH
Confidence 568999999999999999999999999999988887654 222222222 111 257888899998 777666654
Q ss_pred -----CCcEeEEecccCC------CCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeee
Q 023515 81 -----GCDGVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (281)
Q Consensus 81 -----~~d~Vih~a~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (281)
++|++|||||... ....+.++..+++|+.+...+.+++.+.+..+++|++||..+. .....
T Consensus 81 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~Iv~isS~~~~-~~~~~------- 152 (251)
T COG1028 81 EEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKKQRIVNISSVAGL-GGPPG------- 152 (251)
T ss_pred HHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhhCeEEEECCchhc-CCCCC-------
Confidence 5899999999632 2223567899999999999999966665333389999998664 22110
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCC
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (281)
...|+.||++.+.+.+.++.+ +|++++.+.||.+.++.................... +
T Consensus 153 --------------~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~PG~~~t~~~~~~~~~~~~~~~~~~~~~---~-- 213 (251)
T COG1028 153 --------------QAAYAASKAALIGLTKALALELAPRGIRVNAVAPGYIDTPMTAALESAELEALKRLAARI---P-- 213 (251)
T ss_pred --------------cchHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeccCCCcchhhhhhhhhhHHHHHHhcC---C--
Confidence 134999999999999988855 589999999997766543211110000011111111 1
Q ss_pred CccceeHHHHHHHHHHhhcC
Q 023515 227 TFGWVNVKDVANAHIQAFEV 246 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~ 246 (281)
...+..+.+++..+.++...
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~ 233 (251)
T COG1028 214 LGRLGTPEEVAAAVAFLASD 233 (251)
T ss_pred CCCCcCHHHHHHHHHHHcCc
Confidence 11456777888888866543
|
|
| >KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.3e-17 Score=131.38 Aligned_cols=169 Identities=21% Similarity=0.210 Sum_probs=133.1
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
...|-|||||+-.+.|+.+|++|.++|+.|.+-+..++.++.+..+.+ .++...++.|++++++++++.+
T Consensus 27 ~~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~gae~L~~~~~----s~rl~t~~LDVT~~esi~~a~~~V~~~l 102 (322)
T KOG1610|consen 27 LSDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGAESLRGETK----SPRLRTLQLDVTKPESVKEAAQWVKKHL 102 (322)
T ss_pred cCCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCchHHHHhhhhc----CCcceeEeeccCCHHHHHHHHHHHHHhc
Confidence 357889999999999999999999999999999977766666554432 3567788999999999998875
Q ss_pred ---CCcEeEEecccCCCCC------CCccchhhhhHHHHHHHHHHHhhhCC--CccEEEEeccceeeecCCCCCCCCeee
Q 023515 81 ---GCDGVCHTASPFYHDA------KDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (281)
Q Consensus 81 ---~~d~Vih~a~~~~~~~------~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (281)
+.-.||||||...... .++++..+++|+.|+.++.++..+.. ..+|+|++||+.+-... |
T Consensus 103 ~~~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~arGRvVnvsS~~GR~~~--p------- 173 (322)
T KOG1610|consen 103 GEDGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARGRVVNVSSVLGRVAL--P------- 173 (322)
T ss_pred ccccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccCeEEEecccccCccC--c-------
Confidence 4568999999643332 34467899999999999999999862 35799999998763311 1
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCC
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPL 201 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~ 201 (281)
...+|+.||++.|.+...+.++ +|+++.++-||..-++.
T Consensus 174 -------------~~g~Y~~SK~aVeaf~D~lR~EL~~fGV~VsiiePG~f~T~l 215 (322)
T KOG1610|consen 174 -------------ALGPYCVSKFAVEAFSDSLRRELRPFGVKVSIIEPGFFKTNL 215 (322)
T ss_pred -------------ccccchhhHHHHHHHHHHHHHHHHhcCcEEEEeccCcccccc
Confidence 1245999999999998888765 59999999999655544
|
|
| >KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.8e-17 Score=125.55 Aligned_cols=195 Identities=19% Similarity=0.200 Sum_probs=139.3
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHC-CCEEEE-EEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSR-GYTVKA-SVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~-g~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
.++|+||||..+||..|+++|++. |.++++ .+|+++++. ..+..+.....+++.++.|+++.++++.+++
T Consensus 3 pksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a~--~~l~~k~~~d~rvHii~Ldvt~deS~~~~~~~V~~iV 80 (249)
T KOG1611|consen 3 PKSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKAA--TELALKSKSDSRVHIIQLDVTCDESIDNFVQEVEKIV 80 (249)
T ss_pred CccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHhh--HHHHHhhccCCceEEEEEecccHHHHHHHHHHHHhhc
Confidence 677999999999999999999976 555544 566566642 2222222234689999999999888877764
Q ss_pred ---CCcEeEEecccCCCC------CCCccchhhhhHHHHHHHHHHHhhhCC---Cc-----------cEEEEeccceeee
Q 023515 81 ---GCDGVCHTASPFYHD------AKDPQVELLDPAVKGTLNVLNSCAKFP---SI-----------KRVVLTSSMAAVL 137 (281)
Q Consensus 81 ---~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~-----------~~~v~~SS~~~~~ 137 (281)
+.|++|+|||..... ..+.|...+++|..++..+.+.+.+.. .. ..+|++||..+-.
T Consensus 81 g~~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS~~~s~ 160 (249)
T KOG1611|consen 81 GSDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISSSAGSI 160 (249)
T ss_pred ccCCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeecccccc
Confidence 679999999962221 123367899999999999998887741 11 2699999875532
Q ss_pred cCCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHH
Q 023515 138 NTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVL 214 (281)
Q Consensus 138 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~ 214 (281)
+.. . + .....|..||.+...+.++++-+. ++-++.+.||.|-++...
T Consensus 161 ~~~---~----------~------~~~~AYrmSKaAlN~f~ksls~dL~~~~ilv~sihPGwV~TDMgg----------- 210 (249)
T KOG1611|consen 161 GGF---R----------P------GGLSAYRMSKAALNMFAKSLSVDLKDDHILVVSIHPGWVQTDMGG----------- 210 (249)
T ss_pred CCC---C----------C------cchhhhHhhHHHHHHHHHHhhhhhcCCcEEEEEecCCeEEcCCCC-----------
Confidence 110 0 0 023459999999999999988654 677889999999876522
Q ss_pred HHHhCCCCCCCCCccceeHHHHHHHHHHhhcCC
Q 023515 215 SLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP 247 (281)
Q Consensus 215 ~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~ 247 (281)
....+.+++-+..++..+.+-
T Consensus 211 ------------~~a~ltveeSts~l~~~i~kL 231 (249)
T KOG1611|consen 211 ------------KKAALTVEESTSKLLASINKL 231 (249)
T ss_pred ------------CCcccchhhhHHHHHHHHHhc
Confidence 122567888888888877653
|
|
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.5e-18 Score=129.13 Aligned_cols=166 Identities=19% Similarity=0.157 Sum_probs=129.9
Q ss_pred CCeEEEeCC-chHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------
Q 023515 9 GKVVCVTGA-SGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------- 80 (281)
Q Consensus 9 ~~~ilItGa-tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------- 80 (281)
.|+|||||+ +|+||.+|+++|.++||.|+++.|+.+....+... .++...+.|+++++.+.....
T Consensus 7 ~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~-------~gl~~~kLDV~~~~~V~~v~~evr~~~~ 79 (289)
T KOG1209|consen 7 PKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQ-------FGLKPYKLDVSKPEEVVTVSGEVRANPD 79 (289)
T ss_pred CCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHh-------hCCeeEEeccCChHHHHHHHHHHhhCCC
Confidence 678999987 79999999999999999999999998877665532 357888999999988776543
Q ss_pred -CCcEeEEeccc-----CCCCCCCccchhhhhHHHHHHHHHHHhhhC--CCccEEEEeccceeeecCCCCCCCCeeeecC
Q 023515 81 -GCDGVCHTASP-----FYHDAKDPQVELLDPAVKGTLNVLNSCAKF--PSIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (281)
Q Consensus 81 -~~d~Vih~a~~-----~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~ 152 (281)
..|++|||||. .-+......++.+++|+.|..++.++.... ...+.+|++.|..++-..+
T Consensus 80 Gkld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~~vpfp------------ 147 (289)
T KOG1209|consen 80 GKLDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAGVVPFP------------ 147 (289)
T ss_pred CceEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeEEeccc------------
Confidence 57999999984 222223345689999999999999988864 2456899999987765110
Q ss_pred CCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCC
Q 023515 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQ 203 (281)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~ 203 (281)
-.+.|.+||++...+.+.+.-+ +|++++.+-+|.|-+...+
T Consensus 148 ----------f~~iYsAsKAAihay~~tLrlEl~PFgv~Vin~itGGv~T~Ia~ 191 (289)
T KOG1209|consen 148 ----------FGSIYSASKAAIHAYARTLRLELKPFGVRVINAITGGVATDIAD 191 (289)
T ss_pred ----------hhhhhhHHHHHHHHhhhhcEEeeeccccEEEEecccceeccccc
Confidence 1245999999999998877644 4999999999999876543
|
|
| >PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.6e-17 Score=132.30 Aligned_cols=211 Identities=16% Similarity=0.021 Sum_probs=137.1
Q ss_pred HHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----CCcEeEEecccCCCCCCCcc
Q 023515 25 LVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----GCDGVCHTASPFYHDAKDPQ 100 (281)
Q Consensus 25 l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~d~Vih~a~~~~~~~~~~~ 100 (281)
++++|+++|++|++++|+.++.. ..+++++|++|.+++.++++ ++|+||||||... ...+
T Consensus 1 ~a~~l~~~G~~Vv~~~r~~~~~~-------------~~~~~~~Dl~~~~~v~~~~~~~~~~iD~li~nAG~~~---~~~~ 64 (241)
T PRK12428 1 TARLLRFLGARVIGVDRREPGMT-------------LDGFIQADLGDPASIDAAVAALPGRIDALFNIAGVPG---TAPV 64 (241)
T ss_pred ChHHHHhCCCEEEEEeCCcchhh-------------hhHhhcccCCCHHHHHHHHHHhcCCCeEEEECCCCCC---CCCH
Confidence 47899999999999999865421 13467899999998888876 5899999999753 2456
Q ss_pred chhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCCCCCeeeecCCCCCh------hhhccCCchhhhhHHH
Q 023515 101 VELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDP------EVCKQSELWYPLSKTL 173 (281)
Q Consensus 101 ~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~------~~~~~~~~~Y~~sK~~ 173 (281)
+..+++|+.++..+++++.+.+ +.++||++||..++.... ......++.+...... ..+......|+.||.+
T Consensus 65 ~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a 143 (241)
T PRK12428 65 ELVARVNFLGLRHLTEALLPRMAPGGAIVNVASLAGAEWPQ-RLELHKALAATASFDEGAAWLAAHPVALATGYQLSKEA 143 (241)
T ss_pred HHhhhhchHHHHHHHHHHHHhccCCcEEEEeCcHHhhcccc-chHHHHhhhccchHHHHHHhhhccCCCcccHHHHHHHH
Confidence 7899999999999999999853 236899999987764111 0000000000000000 0011123569999999
Q ss_pred HHHHHHHHH-H---hcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC-
Q 023515 174 AEDAAWKFA-K---EKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS- 248 (281)
Q Consensus 174 ~e~~~~~~~-~---~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~- 248 (281)
.+.+.+.++ . ..|+++++++||.+.++........... ....... .+ ...+..++|+|+++.+++....
T Consensus 144 ~~~~~~~la~~e~~~~girvn~v~PG~v~T~~~~~~~~~~~~--~~~~~~~--~~--~~~~~~pe~va~~~~~l~s~~~~ 217 (241)
T PRK12428 144 LILWTMRQAQPWFGARGIRVNCVAPGPVFTPILGDFRSMLGQ--ERVDSDA--KR--MGRPATADEQAAVLVFLCSDAAR 217 (241)
T ss_pred HHHHHHHHHHHhhhccCeEEEEeecCCccCcccccchhhhhh--Hhhhhcc--cc--cCCCCCHHHHHHHHHHHcChhhc
Confidence 999999888 4 3489999999999998864321110000 0000100 01 1235689999999999986533
Q ss_pred -CCccEEEecC
Q 023515 249 -ANGRYCLVER 258 (281)
Q Consensus 249 -~~g~~~~~~~ 258 (281)
..|.....++
T Consensus 218 ~~~G~~i~vdg 228 (241)
T PRK12428 218 WINGVNLPVDG 228 (241)
T ss_pred CccCcEEEecC
Confidence 2455444443
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.8e-16 Score=117.46 Aligned_cols=200 Identities=20% Similarity=0.202 Sum_probs=145.2
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEec
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a 89 (281)
|||.|.||||.+|++|+++..++||+|++++|++.+.... ..++.++.|+.|++.+.+.+.+.|+||..-
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~----------~~~~i~q~Difd~~~~a~~l~g~DaVIsA~ 70 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR----------QGVTILQKDIFDLTSLASDLAGHDAVISAF 70 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc----------ccceeecccccChhhhHhhhcCCceEEEec
Confidence 5899999999999999999999999999999998765441 367899999999999999999999999876
Q ss_pred ccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchhhh
Q 023515 90 SPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPL 169 (281)
Q Consensus 90 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~ 169 (281)
+... .++. .........|++..+.. ++.|++.++..++.+-.++ ...+ +.|..|. -.|..
T Consensus 71 ~~~~---~~~~----~~~~k~~~~li~~l~~a-gv~RllVVGGAGSL~id~g----~rLv--D~p~fP~------ey~~~ 130 (211)
T COG2910 71 GAGA---SDND----ELHSKSIEALIEALKGA-GVPRLLVVGGAGSLEIDEG----TRLV--DTPDFPA------EYKPE 130 (211)
T ss_pred cCCC---CChh----HHHHHHHHHHHHHHhhc-CCeeEEEEcCccceEEcCC----ceee--cCCCCch------hHHHH
Confidence 5432 1111 12234467788888887 8899999999888874332 2222 3333322 23778
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC-C-CCCCCCccceeHHHHHHHHHHhhcCC
Q 023515 170 SKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA-Q-TYPNVTFGWVNVKDVANAHIQAFEVP 247 (281)
Q Consensus 170 sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~i~~~D~a~~i~~~~~~~ 247 (281)
++..+|.+ ..+..+.++.|+.+.|...+-|+..... + .-|+ . ..+...-++|..+|.|-+++.-++++
T Consensus 131 A~~~ae~L-~~Lr~~~~l~WTfvSPaa~f~PGerTg~-y--------rlggD~ll~n~~G~SrIS~aDYAiA~lDe~E~~ 200 (211)
T COG2910 131 ALAQAEFL-DSLRAEKSLDWTFVSPAAFFEPGERTGN-Y--------RLGGDQLLVNAKGESRISYADYAIAVLDELEKP 200 (211)
T ss_pred HHHHHHHH-HHHhhccCcceEEeCcHHhcCCccccCc-e--------EeccceEEEcCCCceeeeHHHHHHHHHHHHhcc
Confidence 88877754 4555555799999999999988644221 0 0111 1 11334456999999999999999987
Q ss_pred CC
Q 023515 248 SA 249 (281)
Q Consensus 248 ~~ 249 (281)
..
T Consensus 201 ~h 202 (211)
T COG2910 201 QH 202 (211)
T ss_pred cc
Confidence 64
|
|
| >KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.6e-16 Score=128.23 Aligned_cols=209 Identities=18% Similarity=0.198 Sum_probs=155.1
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------CC
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------GC 82 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~ 82 (281)
.+|+|||+|..||.+++.++..+|.+|+++.|+..+...+.++.+......++.+..+|+.|.+++..+++ .+
T Consensus 34 ~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~~~~~~~ 113 (331)
T KOG1210|consen 34 RHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEELRDLEGPI 113 (331)
T ss_pred ceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhhhhhccCCc
Confidence 58999999999999999999999999999999998877766665544323347889999999888887776 46
Q ss_pred cEeEEeccc-----CCCCCCCccchhhhhHHHHHHHHHHHhhhCCC----ccEEEEeccceeeecCCCCCCCCeeeecCC
Q 023515 83 DGVCHTASP-----FYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS----IKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (281)
Q Consensus 83 d~Vih~a~~-----~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~----~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~ 153 (281)
|.+|||||. +.+......+..+++|..|+.++++++.+.++ ..+|+.+||..+..+-.+
T Consensus 114 d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~a~~~i~G------------ 181 (331)
T KOG1210|consen 114 DNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQLAMLGIYG------------ 181 (331)
T ss_pred ceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhhhhcCccc------------
Confidence 999999985 33333444678899999999999999998642 237999999877653321
Q ss_pred CCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccc
Q 023515 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGW 230 (281)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (281)
.+.|+.+|.+.-.+...+.++ +++.++..-|+.+.+|+...- +...-..-++. +...+-
T Consensus 182 ----------ysaYs~sK~alrgLa~~l~qE~i~~~v~Vt~~~P~~~~tpGfE~E-n~tkP~~t~ii-------~g~ss~ 243 (331)
T KOG1210|consen 182 ----------YSAYSPSKFALRGLAEALRQELIKYGVHVTLYYPPDTLTPGFERE-NKTKPEETKII-------EGGSSV 243 (331)
T ss_pred ----------ccccccHHHHHHHHHHHHHHHHhhcceEEEEEcCCCCCCCccccc-cccCchheeee-------cCCCCC
Confidence 234999998888887776654 489999999999999863211 00000111111 233445
Q ss_pred eeHHHHHHHHHHhhcCCC
Q 023515 231 VNVKDVANAHIQAFEVPS 248 (281)
Q Consensus 231 i~~~D~a~~i~~~~~~~~ 248 (281)
+..+++|.+++.=+.++.
T Consensus 244 ~~~e~~a~~~~~~~~rg~ 261 (331)
T KOG1210|consen 244 IKCEEMAKAIVKGMKRGN 261 (331)
T ss_pred cCHHHHHHHHHhHHhhcC
Confidence 889999999998777654
|
|
| >KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.6e-17 Score=119.63 Aligned_cols=217 Identities=21% Similarity=0.222 Sum_probs=160.7
Q ss_pred CcchhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc
Q 023515 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (281)
Q Consensus 1 ~~~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 80 (281)
|+-..+.++-..+||||..++|++.++.|.+.|..|.+++...++......+. ..++.|...|+++.+++..++.
T Consensus 1 ~sa~rs~kglvalvtggasglg~ataerlakqgasv~lldlp~skg~~vakel-----g~~~vf~padvtsekdv~aala 75 (260)
T KOG1199|consen 1 MSALRSTKGLVALVTGGASGLGKATAERLAKQGASVALLDLPQSKGADVAKEL-----GGKVVFTPADVTSEKDVRAALA 75 (260)
T ss_pred CchhhhhcCeeEEeecCcccccHHHHHHHHhcCceEEEEeCCcccchHHHHHh-----CCceEEeccccCcHHHHHHHHH
Confidence 34445667889999999999999999999999999999999877765544432 3578999999999988888764
Q ss_pred -------CCcEeEEecccCCCC-----------CCCccchhhhhHHHHHHHHHHHhhhCCC---------ccEEEEeccc
Q 023515 81 -------GCDGVCHTASPFYHD-----------AKDPQVELLDPAVKGTLNVLNSCAKFPS---------IKRVVLTSSM 133 (281)
Q Consensus 81 -------~~d~Vih~a~~~~~~-----------~~~~~~~~~~~n~~~~~~l~~~~~~~~~---------~~~~v~~SS~ 133 (281)
+.|..+||||..... .-+++++.+++|+.||+|+++.....|+ ..-+|++.|.
T Consensus 76 ~ak~kfgrld~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgviintasv 155 (260)
T KOG1199|consen 76 KAKAKFGRLDALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASV 155 (260)
T ss_pred HHHhhccceeeeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEEeecee
Confidence 789999999851110 1123568899999999999988765432 2348899998
Q ss_pred eeeecCCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccH
Q 023515 134 AAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSA 210 (281)
Q Consensus 134 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~ 210 (281)
.++.|..+ +..|++||.+.-.+..-.+++. |++++.|.||.+-+|... ..+
T Consensus 156 aafdgq~g----------------------qaaysaskgaivgmtlpiardla~~gir~~tiapglf~tplls----slp 209 (260)
T KOG1199|consen 156 AAFDGQTG----------------------QAAYSASKGAIVGMTLPIARDLAGDGIRFNTIAPGLFDTPLLS----SLP 209 (260)
T ss_pred eeecCccc----------------------hhhhhcccCceEeeechhhhhcccCceEEEeecccccCChhhh----hhh
Confidence 88764321 3459999998887777776664 899999999998877633 233
Q ss_pred HHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCCCCc
Q 023515 211 AAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPSANG 251 (281)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~~~g 251 (281)
.-++..+...-+++ ++ .-|+.+.+..+..+++++...|
T Consensus 210 ekv~~fla~~ipfp-sr--lg~p~eyahlvqaiienp~lng 247 (260)
T KOG1199|consen 210 EKVKSFLAQLIPFP-SR--LGHPHEYAHLVQAIIENPYLNG 247 (260)
T ss_pred HHHHHHHHHhCCCc-hh--cCChHHHHHHHHHHHhCcccCC
Confidence 34444333221222 22 4489999999999999998766
|
|
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.5e-16 Score=122.22 Aligned_cols=163 Identities=19% Similarity=0.264 Sum_probs=116.7
Q ss_pred eEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCC-CCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------C
Q 023515 11 VVCVTGASGYIASWLVKLLLSRG-YTVKASVRDP-NDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------G 81 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~ 81 (281)
+++||||+|.||..+++.|++++ .+|+++.|+. ..................+.++.+|++|++++.++++ +
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~~ 81 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFGP 81 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS-
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccCC
Confidence 68999999999999999999998 5899999983 2222211222222223589999999999999998875 4
Q ss_pred CcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCC
Q 023515 82 CDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSD 156 (281)
Q Consensus 82 ~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~ 156 (281)
++.|||+|+...+ ...+.++..+..-+.|+.+|.++.... ..+.||.+||+.+..|..+
T Consensus 82 i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~-~l~~~i~~SSis~~~G~~g--------------- 145 (181)
T PF08659_consen 82 IDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENR-PLDFFILFSSISSLLGGPG--------------- 145 (181)
T ss_dssp EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTT-TTSEEEEEEEHHHHTT-TT---------------
T ss_pred cceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcC-CCCeEEEECChhHhccCcc---------------
Confidence 6899999986332 223345677888899999999999987 8899999999998875432
Q ss_pred hhhhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcc
Q 023515 157 PEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMV 197 (281)
Q Consensus 157 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v 197 (281)
+..|+.+-...+.+++.... .|.++++|..+..
T Consensus 146 -------q~~YaaAN~~lda~a~~~~~-~g~~~~sI~wg~W 178 (181)
T PF08659_consen 146 -------QSAYAAANAFLDALARQRRS-RGLPAVSINWGAW 178 (181)
T ss_dssp -------BHHHHHHHHHHHHHHHHHHH-TTSEEEEEEE-EB
T ss_pred -------hHhHHHHHHHHHHHHHHHHh-CCCCEEEEEcccc
Confidence 34599999999999987644 5899999887654
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.5e-16 Score=158.90 Aligned_cols=171 Identities=19% Similarity=0.173 Sum_probs=132.4
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHC-CCEEEEEEcCCCCc-----------chh--------------------------
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSR-GYTVKASVRDPNDP-----------KKT-------------------------- 49 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~-----------~~~-------------------------- 49 (281)
+++++|||||+++||.+++++|+++ |++|++++|+.... ..+
T Consensus 1996 ~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~~ 2075 (2582)
T TIGR02813 1996 SDDVFLVTGGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVRP 2075 (2582)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhcccc
Confidence 4789999999999999999999998 69999999983100 000
Q ss_pred -------hh-hhhccCCCCcEEEEEcCCCCcCcHHHHhc------CCcEeEEecccCC-----CCCCCccchhhhhHHHH
Q 023515 50 -------RH-LLALDGASERLQLFKANLLEEGSFDSIVD------GCDGVCHTASPFY-----HDAKDPQVELLDPAVKG 110 (281)
Q Consensus 50 -------~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~ 110 (281)
.. +.........+.++.+|++|.+++.++++ ++|.|||+||... ....+.|++.+++|+.|
T Consensus 2076 ~~~~~ei~~~la~l~~~G~~v~y~~~DVtD~~av~~av~~v~~~g~IDgVVhnAGv~~~~~i~~~t~e~f~~v~~~nv~G 2155 (2582)
T TIGR02813 2076 VLSSLEIAQALAAFKAAGASAEYASADVTNSVSVAATVQPLNKTLQITGIIHGAGVLADKHIQDKTLEEFNAVYGTKVDG 2155 (2582)
T ss_pred cchhHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHHHH
Confidence 00 00001112468899999999988887775 5899999999632 23345677899999999
Q ss_pred HHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc-CCcE
Q 023515 111 TLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK-SIDL 189 (281)
Q Consensus 111 ~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-g~~~ 189 (281)
+.++++++... ..++||++||..++++..+ +..|+.+|.+.+.+.+.++.++ ++++
T Consensus 2156 ~~~Ll~al~~~-~~~~IV~~SSvag~~G~~g----------------------qs~YaaAkaaL~~la~~la~~~~~irV 2212 (2582)
T TIGR02813 2156 LLSLLAALNAE-NIKLLALFSSAAGFYGNTG----------------------QSDYAMSNDILNKAALQLKALNPSAKV 2212 (2582)
T ss_pred HHHHHHHHHHh-CCCeEEEEechhhcCCCCC----------------------cHHHHHHHHHHHHHHHHHHHHcCCcEE
Confidence 99999999886 5678999999988775431 2349999999999999888776 6899
Q ss_pred EEEcCCcccCCC
Q 023515 190 VTINPAMVIGPL 201 (281)
Q Consensus 190 ~~irp~~v~g~~ 201 (281)
+++.||.+.|+.
T Consensus 2213 ~sI~wG~wdtgm 2224 (2582)
T TIGR02813 2213 MSFNWGPWDGGM 2224 (2582)
T ss_pred EEEECCeecCCc
Confidence 999999998765
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-15 Score=123.45 Aligned_cols=170 Identities=15% Similarity=0.125 Sum_probs=134.0
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCc----HHHHhcC--C
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGS----FDSIVDG--C 82 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~----~~~~~~~--~ 82 (281)
+.-+.|||||.+||++.+++|+++|.+|+++.|..++.+.+..+...... ..+.++..|+++.+. +++.+.+ +
T Consensus 49 g~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~~-vev~~i~~Dft~~~~~ye~i~~~l~~~~V 127 (312)
T KOG1014|consen 49 GSWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKYK-VEVRIIAIDFTKGDEVYEKLLEKLAGLDV 127 (312)
T ss_pred CCEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHhC-cEEEEEEEecCCCchhHHHHHHHhcCCce
Confidence 57899999999999999999999999999999999998887776654432 578899999987654 4444454 5
Q ss_pred cEeEEecccCCCC-------CCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeecC
Q 023515 83 DGVCHTASPFYHD-------AKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (281)
Q Consensus 83 d~Vih~a~~~~~~-------~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~ 152 (281)
-++|||+|...+. ..+..+..+.+|+.++..+.+...+.| +.+.+|++||.++....+
T Consensus 128 gILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G~IvnigS~ag~~p~p------------ 195 (312)
T KOG1014|consen 128 GILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKGIIVNIGSFAGLIPTP------------ 195 (312)
T ss_pred EEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCceEEEeccccccccCh------------
Confidence 5799999964421 122346889999999999999999864 456799999987654111
Q ss_pred CCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCC
Q 023515 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPL 201 (281)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~ 201 (281)
..+.|+++|...+.+.+.+.+++ |+.+-.+-|..|-++.
T Consensus 196 ----------~~s~ysasK~~v~~~S~~L~~Ey~~~gI~Vq~v~p~~VaTkm 237 (312)
T KOG1014|consen 196 ----------LLSVYSASKAFVDFFSRCLQKEYESKGIFVQSVIPYLVATKM 237 (312)
T ss_pred ----------hHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEEeehhheeccc
Confidence 23459999999999988888765 8888899999988765
|
|
| >KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.9e-15 Score=116.55 Aligned_cols=212 Identities=17% Similarity=0.082 Sum_probs=144.1
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------- 80 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------- 80 (281)
+.+.||+||+|.+||..++..+.+++.++....+....++ ++.+....+ .......+|++....+.++.+
T Consensus 5 ~r~villTGaSrgiG~~~v~~i~aed~e~~r~g~~r~~a~-~~~L~v~~g--d~~v~~~g~~~e~~~l~al~e~~r~k~g 81 (253)
T KOG1204|consen 5 MRKVILLTGASRGIGTGSVATILAEDDEALRYGVARLLAE-LEGLKVAYG--DDFVHVVGDITEEQLLGALREAPRKKGG 81 (253)
T ss_pred cceEEEEecCCCCccHHHHHHHHhcchHHHHHhhhccccc-ccceEEEec--CCcceechHHHHHHHHHHHHhhhhhcCC
Confidence 4678999999999999999999999877665555443333 222221111 234445566666554555443
Q ss_pred CCcEeEEecccCC--------CCCCCccchhhhhHHHHHHHHHHHhhhCC-C---ccEEEEeccceeeecCCCCCCCCee
Q 023515 81 GCDGVCHTASPFY--------HDAKDPQVELLDPAVKGTLNVLNSCAKFP-S---IKRVVLTSSMAAVLNTGKPRTPDVV 148 (281)
Q Consensus 81 ~~d~Vih~a~~~~--------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~---~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (281)
+-|+||||||... ..+.+.|+.+++.|+.+...|...+.+.. + .+.+|++||.++...-.
T Consensus 82 kr~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vVnvSS~aav~p~~-------- 153 (253)
T KOG1204|consen 82 KRDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVVNVSSLAAVRPFS-------- 153 (253)
T ss_pred ceeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEEEecchhhhcccc--------
Confidence 5699999999532 22345688999999999999999998752 2 36799999987765110
Q ss_pred eecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc--CCcEEEEcCCcccCCCCCCCC---Ccc---HHHHHHHHhCC
Q 023515 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK--SIDLVTINPAMVIGPLLQPTL---NTS---AAAVLSLIKGA 220 (281)
Q Consensus 149 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--g~~~~~irp~~v~g~~~~~~~---~~~---~~~~~~~~~~~ 220 (281)
....|+.+|++-+-+.+.++.+. ++++..++||.+.++.+.... ... ...+++...
T Consensus 154 --------------~wa~yc~~KaAr~m~f~~lA~EEp~~v~vl~~aPGvvDT~mq~~ir~~~~~~p~~l~~f~el~~-- 217 (253)
T KOG1204|consen 154 --------------SWAAYCSSKAARNMYFMVLASEEPFDVRVLNYAPGVVDTQMQVCIRETSRMTPADLKMFKELKE-- 217 (253)
T ss_pred --------------HHHHhhhhHHHHHHHHHHHhhcCccceeEEEccCCcccchhHHHHhhccCCCHHHHHHHHHHHh--
Confidence 12349999999999999888654 899999999999987532110 111 222333322
Q ss_pred CCCCCCCccceeHHHHHHHHHHhhcCC-CCCcc
Q 023515 221 QTYPNVTFGWVNVKDVANAHIQAFEVP-SANGR 252 (281)
Q Consensus 221 ~~~~~~~~~~i~~~D~a~~i~~~~~~~-~~~g~ 252 (281)
.-..+.+.+.|+.+..+++.. .-.|.
T Consensus 218 ------~~~ll~~~~~a~~l~~L~e~~~f~sG~ 244 (253)
T KOG1204|consen 218 ------SGQLLDPQVTAKVLAKLLEKGDFVSGQ 244 (253)
T ss_pred ------cCCcCChhhHHHHHHHHHHhcCccccc
Confidence 223678899999999998876 44453
|
|
| >KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.8e-13 Score=113.47 Aligned_cols=211 Identities=21% Similarity=0.201 Sum_probs=131.5
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcC-cHHHHhc----C
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEG-SFDSIVD----G 81 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~----~ 81 (281)
.+.++|+|+||||.+|+-+++.|+++|+.|.++.|+.++...+...... ....+.+..+..... .+..+.+ .
T Consensus 77 ~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~~~~~---d~~~~~v~~~~~~~~d~~~~~~~~~~~~ 153 (411)
T KOG1203|consen 77 KKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLGVFFV---DLGLQNVEADVVTAIDILKKLVEAVPKG 153 (411)
T ss_pred CCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhccccc---ccccceeeeccccccchhhhhhhhcccc
Confidence 4578999999999999999999999999999999998877665441111 123445555554433 3333333 2
Q ss_pred CcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhc
Q 023515 82 CDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCK 161 (281)
Q Consensus 82 ~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 161 (281)
..+++-+++-.+... +...-.++...|+++++++|+.. ++++||++||+..-..+. . ++..
T Consensus 154 ~~~v~~~~ggrp~~e--d~~~p~~VD~~g~knlvdA~~~a-Gvk~~vlv~si~~~~~~~-----~--------~~~~--- 214 (411)
T KOG1203|consen 154 VVIVIKGAGGRPEEE--DIVTPEKVDYEGTKNLVDACKKA-GVKRVVLVGSIGGTKFNQ-----P--------PNIL--- 214 (411)
T ss_pred ceeEEecccCCCCcc--cCCCcceecHHHHHHHHHHHHHh-CCceEEEEEeecCcccCC-----C--------chhh---
Confidence 346666655322211 11133367889999999999998 999999999875532110 0 0000
Q ss_pred cCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCC-C-CCCCccceeHHHHHHH
Q 023515 162 QSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT-Y-PNVTFGWVNVKDVANA 239 (281)
Q Consensus 162 ~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~i~~~D~a~~ 239 (281)
...-.+-.+|..+|.++ ++.|++.++|||+...-+....... . ....+. + +...-..+.-.|+|+.
T Consensus 215 ~~~~~~~~~k~~~e~~~----~~Sgl~ytiIR~g~~~~~~~~~~~~------~--~~~~~~~~~~~~~~~~i~r~~vael 282 (411)
T KOG1203|consen 215 LLNGLVLKAKLKAEKFL----QDSGLPYTIIRPGGLEQDTGGQREV------V--VDDEKELLTVDGGAYSISRLDVAEL 282 (411)
T ss_pred hhhhhhhHHHHhHHHHH----HhcCCCcEEEeccccccCCCCccee------c--ccCccccccccccceeeehhhHHHH
Confidence 00011446777777776 4679999999999886432111000 0 000000 0 1111136888999999
Q ss_pred HHHhhcCCCCCc
Q 023515 240 HIQAFEVPSANG 251 (281)
Q Consensus 240 i~~~~~~~~~~g 251 (281)
++.++.+....+
T Consensus 283 ~~~all~~~~~~ 294 (411)
T KOG1203|consen 283 VAKALLNEAATF 294 (411)
T ss_pred HHHHHhhhhhcc
Confidence 999998876655
|
|
| >KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.3e-13 Score=99.91 Aligned_cols=158 Identities=16% Similarity=0.119 Sum_probs=119.6
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCc
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCD 83 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d 83 (281)
.|+||+.+|.||||..|+.+++++++.+ .+|+++.|+....+. ....+.....|....+++....+++|
T Consensus 15 ~mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d~a---------t~k~v~q~~vDf~Kl~~~a~~~qg~d 85 (238)
T KOG4039|consen 15 RMQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPDPA---------TDKVVAQVEVDFSKLSQLATNEQGPD 85 (238)
T ss_pred hhhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCCcc---------ccceeeeEEechHHHHHHHhhhcCCc
Confidence 3678999999999999999999999998 589999988532222 12456777778876666666777999
Q ss_pred EeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccC
Q 023515 84 GVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQS 163 (281)
Q Consensus 84 ~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 163 (281)
+.|.+-|-...... .+-.+++.=+-+..+.++|++. ++++|+.+||.++.- + .
T Consensus 86 V~FcaLgTTRgkaG--adgfykvDhDyvl~~A~~AKe~-Gck~fvLvSS~GAd~----s--------------------S 138 (238)
T KOG4039|consen 86 VLFCALGTTRGKAG--ADGFYKVDHDYVLQLAQAAKEK-GCKTFVLVSSAGADP----S--------------------S 138 (238)
T ss_pred eEEEeecccccccc--cCceEeechHHHHHHHHHHHhC-CCeEEEEEeccCCCc----c--------------------c
Confidence 99998775333211 2355677777888899999998 999999999976531 0 0
Q ss_pred CchhhhhHHHHHHHHHHHHHhcCC-cEEEEcCCcccCCCCC
Q 023515 164 ELWYPLSKTLAEDAAWKFAKEKSI-DLVTINPAMVIGPLLQ 203 (281)
Q Consensus 164 ~~~Y~~sK~~~e~~~~~~~~~~g~-~~~~irp~~v~g~~~~ 203 (281)
...|-..|...|+-+.++ .+ +++++|||.+.+.+..
T Consensus 139 rFlY~k~KGEvE~~v~eL----~F~~~~i~RPG~ll~~R~e 175 (238)
T KOG4039|consen 139 RFLYMKMKGEVERDVIEL----DFKHIIILRPGPLLGERTE 175 (238)
T ss_pred ceeeeeccchhhhhhhhc----cccEEEEecCcceeccccc
Confidence 134999999999988654 44 6899999999997644
|
|
| >KOG3019 consensus Predicted nucleoside-diphosphate sugar epimerase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-13 Score=106.92 Aligned_cols=237 Identities=18% Similarity=0.116 Sum_probs=146.3
Q ss_pred CCCeEEEeCCchHHHHHHHH-----HHHHCC----CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHH
Q 023515 8 AGKVVCVTGASGYIASWLVK-----LLLSRG----YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI 78 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~-----~L~~~g----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 78 (281)
+.++.++-+++|+|+..|.. ++.+.+ |+|+++.|.+.+.....++ .|..-.. -..
T Consensus 11 ~sr~a~~~~~~g~i~~nl~~~~~~~H~t~~~~a~~h~vtv~sR~pg~~ritw~e--------------l~~~Gip--~sc 74 (315)
T KOG3019|consen 11 KSRDAVSNWSNGIIRENLGSETSCCHDTNVHSADNHAVTVLSRSPGKARITWPE--------------LDFPGIP--ISC 74 (315)
T ss_pred ccccCCCCccccchhccccCcccccccCCCCcccccceEEEecCCCCcccccch--------------hcCCCCc--eeh
Confidence 45678899999999988877 444434 8999999998776443332 2222111 011
Q ss_pred hcCCcEeEEecccCCCCCC-CccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCCCCCeeeecCCCCC
Q 023515 79 VDGCDGVCHTASPFYHDAK-DPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSD 156 (281)
Q Consensus 79 ~~~~d~Vih~a~~~~~~~~-~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~ 156 (281)
...+..+.+|+..+-..+. ...++.....+..+..|.++..... ..+.+|.+|..+.|. ......++|++..+
T Consensus 75 ~a~vna~g~n~l~P~rRWsp~fqkev~gSRi~~t~~la~aI~~aPq~~~~~Vlv~gva~y~-----pS~s~eY~e~~~~q 149 (315)
T KOG3019|consen 75 VAGVNAVGNNALLPIRRWSPEFQKEVKGSRIRVTSKLADAINNAPQEARPTVLVSGVAVYV-----PSESQEYSEKIVHQ 149 (315)
T ss_pred HHHHhhhhhhccCchhhcCHHHHHHhhcceeeHHHHHHHHHhcCCCCCCCeEEEEeeEEec-----cccccccccccccC
Confidence 1122333344432111222 1122444455677888888888763 345799999876554 12345667776655
Q ss_pred hhhhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCC-CCCCCCccceeHHH
Q 023515 157 PEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ-TYPNVTFGWVNVKD 235 (281)
Q Consensus 157 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~D 235 (281)
.. +..+.--.+=|..++.-. ..++.+++|.|.|.|-+..- .... ...-++..|.| ..|+|++.|||++|
T Consensus 150 gf------d~~srL~l~WE~aA~~~~--~~~r~~~iR~GvVlG~gGGa-~~~M-~lpF~~g~GGPlGsG~Q~fpWIHv~D 219 (315)
T KOG3019|consen 150 GF------DILSRLCLEWEGAALKAN--KDVRVALIRIGVVLGKGGGA-LAMM-ILPFQMGAGGPLGSGQQWFPWIHVDD 219 (315)
T ss_pred Ch------HHHHHHHHHHHHHhhccC--cceeEEEEEEeEEEecCCcc-hhhh-hhhhhhccCCcCCCCCeeeeeeehHH
Confidence 33 111111111122222211 24899999999999865221 1111 12222333443 44799999999999
Q ss_pred HHHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 236 VANAHIQAFEVPSANGRYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 236 ~a~~i~~~~~~~~~~g~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
++..+..+++++.-.|+.|.+ .++.+..|+++.+.++++.
T Consensus 220 L~~li~~ale~~~v~GViNgvAP~~~~n~Ef~q~lg~aL~R 260 (315)
T KOG3019|consen 220 LVNLIYEALENPSVKGVINGVAPNPVRNGEFCQQLGSALSR 260 (315)
T ss_pred HHHHHHHHHhcCCCCceecccCCCccchHHHHHHHHHHhCC
Confidence 999999999999889999976 6899999999999999875
|
|
| >KOG4288 consensus Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-12 Score=101.98 Aligned_cols=206 Identities=16% Similarity=0.090 Sum_probs=151.4
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEec
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a 89 (281)
-+.++.|+.||.|+++|+.....++.|..+.|+..+ ..+.. ....++.+++|.....-++..+.++..++-++
T Consensus 53 e~tlvlggnpfsgs~vlk~A~~vv~svgilsen~~k-~~l~s------w~~~vswh~gnsfssn~~k~~l~g~t~v~e~~ 125 (283)
T KOG4288|consen 53 EWTLVLGGNPFSGSEVLKNATNVVHSVGILSENENK-QTLSS------WPTYVSWHRGNSFSSNPNKLKLSGPTFVYEMM 125 (283)
T ss_pred HHHhhhcCCCcchHHHHHHHHhhceeeeEeecccCc-chhhC------CCcccchhhccccccCcchhhhcCCcccHHHh
Confidence 458899999999999999999999999999998642 12111 12468889999988777888888999999988
Q ss_pred ccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchhhh
Q 023515 90 SPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPL 169 (281)
Q Consensus 90 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~ 169 (281)
+-+.. ...+.+.|-....+..+++.+. ++++|+|+|-. .+. -++ -..+.|-.
T Consensus 126 ggfgn-----~~~m~~ing~ani~a~kaa~~~-gv~~fvyISa~-d~~-~~~--------------------~i~rGY~~ 177 (283)
T KOG4288|consen 126 GGFGN-----IILMDRINGTANINAVKAAAKA-GVPRFVYISAH-DFG-LPP--------------------LIPRGYIE 177 (283)
T ss_pred cCccc-----hHHHHHhccHhhHHHHHHHHHc-CCceEEEEEhh-hcC-CCC--------------------ccchhhhc
Confidence 76442 2367778888889999999998 99999999974 221 110 01246999
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccH----HHHHHHH-------hCCCCCCCCCccceeHHHHHH
Q 023515 170 SKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSA----AAVLSLI-------KGAQTYPNVTFGWVNVKDVAN 238 (281)
Q Consensus 170 sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~----~~~~~~~-------~~~~~~~~~~~~~i~~~D~a~ 238 (281)
+|+++|.-+... ++.+-+++|||.+||.+.-....... ..+.+.. +..|..|......+.++++|.
T Consensus 178 gKR~AE~Ell~~---~~~rgiilRPGFiyg~R~v~g~~~pL~~vg~pl~~~~~~a~k~~~kLp~lg~l~~ppvnve~VA~ 254 (283)
T KOG4288|consen 178 GKREAEAELLKK---FRFRGIILRPGFIYGTRNVGGIKSPLHTVGEPLEMVLKFALKPLNKLPLLGPLLAPPVNVESVAL 254 (283)
T ss_pred cchHHHHHHHHh---cCCCceeeccceeecccccCcccccHHhhhhhHHHHHHhhhchhhcCcccccccCCCcCHHHHHH
Confidence 999999876443 57899999999999974322221111 1112211 112566788889999999999
Q ss_pred HHHHhhcCCCCCccE
Q 023515 239 AHIQAFEVPSANGRY 253 (281)
Q Consensus 239 ~i~~~~~~~~~~g~~ 253 (281)
+.+.+++++.-.|++
T Consensus 255 aal~ai~dp~f~Gvv 269 (283)
T KOG4288|consen 255 AALKAIEDPDFKGVV 269 (283)
T ss_pred HHHHhccCCCcCcee
Confidence 999999998765543
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.6e-13 Score=101.76 Aligned_cols=129 Identities=13% Similarity=0.119 Sum_probs=86.4
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++++++||||+++||+++++.|+++|++|++++|+.+........... ......++.+|+++.+.+.++++
T Consensus 14 l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~ 91 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITN--LGGEALFVSYDMEKQGDWQRVISITLNAF 91 (169)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 5689999999999999999999999999999999876543332222111 12356788999999888777553
Q ss_pred -CCcEeEEecccCC---CCCCCccchhhhhHHHHHHHHHHHhhhC----------CCccEEEEeccceeee
Q 023515 81 -GCDGVCHTASPFY---HDAKDPQVELLDPAVKGTLNVLNSCAKF----------PSIKRVVLTSSMAAVL 137 (281)
Q Consensus 81 -~~d~Vih~a~~~~---~~~~~~~~~~~~~n~~~~~~l~~~~~~~----------~~~~~~v~~SS~~~~~ 137 (281)
++|++|||||... ..++...+.....|+.++....+.+.+. .+.++|-.+||.++-+
T Consensus 92 G~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (169)
T PRK06720 92 SRIDMLFQNAGLYKIDSIFSRQQENDSNVLCINDVWIEIKQLTSSFMKQQEEVVLSDLPIFGIIGTKGQSF 162 (169)
T ss_pred CCCCEEEECCCcCCCCCcccccchhHhhceeccHHHHHHHHHHHHHHhcCCEEEeecCceeeEeccccccc
Confidence 6899999998622 1112121122345566555555554442 1345788888876544
|
|
| >KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2e-12 Score=102.35 Aligned_cols=180 Identities=17% Similarity=0.127 Sum_probs=125.7
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCC-----EEEEEEcCCCCcchhhhhhhccCC--CCcEEEEEcCCCCcCcHHHHh--
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGY-----TVKASVRDPNDPKKTRHLLALDGA--SERLQLFKANLLEEGSFDSIV-- 79 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~-----~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~-- 79 (281)
.|.++|||++.+||.+||.+|++... ++.+.+|+.++++...+......+ ..++++++.|+++-.++..+.
T Consensus 3 RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~~A~~d 82 (341)
T KOG1478|consen 3 RKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSNMQSVFRASKD 82 (341)
T ss_pred ceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhhHHHHHHHHHH
Confidence 67899999999999999999998753 466779988888776554333222 468999999999876655544
Q ss_pred -----cCCcEeEEecccCCCC--------------------------------CCCccchhhhhHHHHHHHHHHHhhhC-
Q 023515 80 -----DGCDGVCHTASPFYHD--------------------------------AKDPQVELLDPAVKGTLNVLNSCAKF- 121 (281)
Q Consensus 80 -----~~~d~Vih~a~~~~~~--------------------------------~~~~~~~~~~~n~~~~~~l~~~~~~~- 121 (281)
++.|.|+-|||..... ..+...+.++.||.|...++....+.
T Consensus 83 i~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l~pll 162 (341)
T KOG1478|consen 83 IKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELEPLL 162 (341)
T ss_pred HHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhhhhHh
Confidence 3789999999832211 12445688999999999999988875
Q ss_pred --CCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCc
Q 023515 122 --PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAM 196 (281)
Q Consensus 122 --~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~ 196 (281)
....++|.+||..+-. . -++-++... ....-+|..||.+.+-+-....+.. |+...++-||.
T Consensus 163 ~~~~~~~lvwtSS~~a~k-------k--~lsleD~q~----~kg~~pY~sSKrl~DlLh~A~~~~~~~~g~~qyvv~pg~ 229 (341)
T KOG1478|consen 163 CHSDNPQLVWTSSRMARK-------K--NLSLEDFQH----SKGKEPYSSSKRLTDLLHVALNRNFKPLGINQYVVQPGI 229 (341)
T ss_pred hcCCCCeEEEEeeccccc-------c--cCCHHHHhh----hcCCCCcchhHHHHHHHHHHHhccccccchhhhcccCce
Confidence 2345899999976532 0 111111110 1112349999999998876665543 67777888887
Q ss_pred ccCCC
Q 023515 197 VIGPL 201 (281)
Q Consensus 197 v~g~~ 201 (281)
.....
T Consensus 230 ~tt~~ 234 (341)
T KOG1478|consen 230 FTTNS 234 (341)
T ss_pred eecch
Confidence 66543
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.3e-11 Score=103.05 Aligned_cols=181 Identities=15% Similarity=0.023 Sum_probs=122.5
Q ss_pred hccCCCeEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCC
Q 023515 5 AAAAGKVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGC 82 (281)
Q Consensus 5 ~~~~~~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 82 (281)
+..+|+||.|+|++|.||+.++..|+.++ .+++++++...+.+.++ +. . . .......+.+|+.++.+.++++
T Consensus 4 ~~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~D-l~-~-~---~~~~~v~~~td~~~~~~~l~ga 77 (321)
T PTZ00325 4 SALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAAD-LS-H-I---DTPAKVTGYADGELWEKALRGA 77 (321)
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccc-hh-h-c---CcCceEEEecCCCchHHHhCCC
Confidence 34578899999999999999999998665 68999999332222211 10 0 0 1123445666766667788999
Q ss_pred cEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhcc
Q 023515 83 DGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQ 162 (281)
Q Consensus 83 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 162 (281)
|+||++||...... ..+.+.+..|+..+.++++++.++ +.+++|+++|.-+..... .. ...+.+.....|
T Consensus 78 DvVVitaG~~~~~~-~tR~dll~~N~~i~~~i~~~i~~~-~~~~iviv~SNPvdv~~~--~~-~~~~~~~sg~p~----- 147 (321)
T PTZ00325 78 DLVLICAGVPRKPG-MTRDDLFNTNAPIVRDLVAAVASS-APKAIVGIVSNPVNSTVP--IA-AETLKKAGVYDP----- 147 (321)
T ss_pred CEEEECCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHHHHH--HH-HhhhhhccCCCh-----
Confidence 99999999754432 345588999999999999999998 889999999964421000 00 000012222222
Q ss_pred CCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCC
Q 023515 163 SELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQ 203 (281)
Q Consensus 163 ~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~ 203 (281)
...||.+-...-++-...++..++....++ +.|+|...+
T Consensus 148 -~~viG~g~LDs~R~r~~la~~l~v~~~~V~-~~VlGeHGd 186 (321)
T PTZ00325 148 -RKLFGVTTLDVVRARKFVAEALGMNPYDVN-VPVVGGHSG 186 (321)
T ss_pred -hheeechhHHHHHHHHHHHHHhCcChhheE-EEEEeecCC
Confidence 245777756666777777788888888887 788876533
|
|
| >COG0623 FabI Enoyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.8e-10 Score=86.41 Aligned_cols=213 Identities=13% Similarity=0.093 Sum_probs=138.5
Q ss_pred ccCCCeEEEeCC--chHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 6 AAAGKVVCVTGA--SGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 6 ~~~~~~ilItGa--tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
.+++|++||+|- ...|+..+++.|.++|.++......+.-..+++++.+. ......++||+++.+.++.+++
T Consensus 3 ~L~GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e~l~krv~~la~~---~~s~~v~~cDV~~d~~i~~~f~~i~ 79 (259)
T COG0623 3 LLEGKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGERLEKRVEELAEE---LGSDLVLPCDVTNDESIDALFATIK 79 (259)
T ss_pred ccCCceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHhh---ccCCeEEecCCCCHHHHHHHHHHHH
Confidence 367999999997 46899999999999999988888766322233333221 1235678999999998888875
Q ss_pred ----CCcEeEEecccCC---------CCCCCccchhhhhHHHHHHHHHHHhhhCCCc-cEEEEeccceeeecCCCCCCCC
Q 023515 81 ----GCDGVCHTASPFY---------HDAKDPQVELLDPAVKGTLNVLNSCAKFPSI-KRVVLTSSMAAVLNTGKPRTPD 146 (281)
Q Consensus 81 ----~~d~Vih~a~~~~---------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~v~~SS~~~~~~~~~~~~~~ 146 (281)
..|.+||+.|..+ +...+.+....++-..+...+.++|++.|+. ..+|-++ |+|.
T Consensus 80 ~~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLt----Ylgs------- 148 (259)
T COG0623 80 KKWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLT----YLGS------- 148 (259)
T ss_pred HhhCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEE----eccc-------
Confidence 6899999987533 2223444566666777778888888887543 3343332 2211
Q ss_pred eeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCC
Q 023515 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY 223 (281)
Q Consensus 147 ~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~ 223 (281)
|.. .++.+..+.+|++.|.-+|.++.+. |+++..|..|.+-+=-... .......+.......
T Consensus 149 ----~r~-------vPnYNvMGvAKAaLEasvRyLA~dlG~~gIRVNaISAGPIrTLAasg-I~~f~~~l~~~e~~a--- 213 (259)
T COG0623 149 ----ERV-------VPNYNVMGVAKAALEASVRYLAADLGKEGIRVNAISAGPIRTLAASG-IGDFRKMLKENEANA--- 213 (259)
T ss_pred ----eee-------cCCCchhHHHHHHHHHHHHHHHHHhCccCeEEeeecccchHHHHhhc-cccHHHHHHHHHhhC---
Confidence 000 0123568999999999999999875 6788888877764321111 111122222222211
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCCC
Q 023515 224 PNVTFGWVNVKDVANAHIQAFEVPSA 249 (281)
Q Consensus 224 ~~~~~~~i~~~D~a~~i~~~~~~~~~ 249 (281)
..+.-+.++||+....+++..-..
T Consensus 214 --Pl~r~vt~eeVG~tA~fLlSdLss 237 (259)
T COG0623 214 --PLRRNVTIEEVGNTAAFLLSDLSS 237 (259)
T ss_pred --CccCCCCHHHhhhhHHHHhcchhc
Confidence 233457899999999999987554
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.9e-10 Score=97.57 Aligned_cols=175 Identities=17% Similarity=0.082 Sum_probs=119.0
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
.+||.|||++|.||+.++..|+.++ .+++++++.+.+.+.+ ++. . ........++.+.+++.+.++++|+||
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~-Dl~-~----~~~~~~i~~~~~~~d~~~~l~~aDiVV 91 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAA-DVS-H----INTPAQVRGFLGDDQLGDALKGADLVI 91 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEc-hhh-h----CCcCceEEEEeCCCCHHHHcCCCCEEE
Confidence 4689999999999999999999776 5899999877332221 110 0 011123345555567888999999999
Q ss_pred EecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCch
Q 023515 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (281)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 166 (281)
|+||..... ...+.+.++.|+..+.++.+.+.++ +...+|+++|--+.. .. + .-...+....... +...
T Consensus 92 itAG~~~~~-g~~R~dll~~N~~i~~~i~~~i~~~-~p~aivivvSNPvD~-~~-~-i~t~~~~~~s~~p------~~~v 160 (323)
T PLN00106 92 IPAGVPRKP-GMTRDDLFNINAGIVKTLCEAVAKH-CPNALVNIISNPVNS-TV-P-IAAEVLKKAGVYD------PKKL 160 (323)
T ss_pred EeCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeCCCccc-cH-H-HHHHHHHHcCCCC------cceE
Confidence 999975543 3445689999999999999999998 778888888853310 00 0 0000111112111 2356
Q ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCC
Q 023515 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPL 201 (281)
Q Consensus 167 Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~ 201 (281)
||.++...+++-..+++..|++...+. +.|+|..
T Consensus 161 iG~~~LDs~Rl~~~lA~~lgv~~~~V~-~~ViGeH 194 (323)
T PLN00106 161 FGVTTLDVVRANTFVAEKKGLDPADVD-VPVVGGH 194 (323)
T ss_pred EEEecchHHHHHHHHHHHhCCChhheE-EEEEEeC
Confidence 999999999999999999998877774 4455543
|
|
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-10 Score=90.90 Aligned_cols=104 Identities=13% Similarity=0.152 Sum_probs=77.7
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------CC
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------GC 82 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~ 82 (281)
|+++||||||++|+ +++.|+++|++|++++|++++...+..... ....+.++.+|++|.+++..+++ ++
T Consensus 1 m~vlVtGGtG~gg~-la~~L~~~G~~V~v~~R~~~~~~~l~~~l~---~~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~i 76 (177)
T PRK08309 1 MHALVIGGTGMLKR-VSLWLCEKGFHVSVIARREVKLENVKREST---TPESITPLPLDYHDDDALKLAIKSTIEKNGPF 76 (177)
T ss_pred CEEEEECcCHHHHH-HHHHHHHCcCEEEEEECCHHHHHHHHHHhh---cCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 47999999988876 999999999999999997654433322111 12468889999999998888775 34
Q ss_pred cEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCcc----EEEEecccee
Q 023515 83 DGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIK----RVVLTSSMAA 135 (281)
Q Consensus 83 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~----~~v~~SS~~~ 135 (281)
|.+|+. +.+.++.++..+|++. +++ +|+++-...+
T Consensus 77 d~lv~~-----------------vh~~~~~~~~~~~~~~-gv~~~~~~~~h~~gs~~ 115 (177)
T PRK08309 77 DLAVAW-----------------IHSSAKDALSVVCREL-DGSSETYRLFHVLGSAA 115 (177)
T ss_pred eEEEEe-----------------ccccchhhHHHHHHHH-ccCCCCceEEEEeCCcC
Confidence 555543 3445778999999998 777 8999876443
|
|
| >PRK13656 trans-2-enoyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.3e-09 Score=88.82 Aligned_cols=81 Identities=11% Similarity=0.052 Sum_probs=60.0
Q ss_pred CCeEEEeCCchHHHHH--HHHHHHHCCCEEEEEEcCCCCcc------------hhhhhhhccCCCCcEEEEEcCCCCcCc
Q 023515 9 GKVVCVTGASGYIASW--LVKLLLSRGYTVKASVRDPNDPK------------KTRHLLALDGASERLQLFKANLLEEGS 74 (281)
Q Consensus 9 ~~~ilItGatG~iG~~--l~~~L~~~g~~V~~~~r~~~~~~------------~~~~~~~~~~~~~~~~~~~~D~~~~~~ 74 (281)
+|++||||+++++|.+ +++.| +.|.+|+++.+...... .+.++.... ...+..+.+|+++++.
T Consensus 41 gK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~--G~~a~~i~~DVss~E~ 117 (398)
T PRK13656 41 PKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAA--GLYAKSINGDAFSDEI 117 (398)
T ss_pred CCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhc--CCceEEEEcCCCCHHH
Confidence 6899999999999999 89999 99999988886432211 112221111 2346788999999988
Q ss_pred HHHHhc-------CCcEeEEecccC
Q 023515 75 FDSIVD-------GCDGVCHTASPF 92 (281)
Q Consensus 75 ~~~~~~-------~~d~Vih~a~~~ 92 (281)
+.++++ ++|++||++|..
T Consensus 118 v~~lie~I~e~~G~IDiLVnSaA~~ 142 (398)
T PRK13656 118 KQKVIELIKQDLGQVDLVVYSLASP 142 (398)
T ss_pred HHHHHHHHHHhcCCCCEEEECCccC
Confidence 777765 689999999854
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.3e-09 Score=88.84 Aligned_cols=118 Identities=15% Similarity=0.113 Sum_probs=80.1
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCC-------CEEEEEEcCCCCcchhhhhhhccCCCCcE-EEEEcCCCCcCcHHHHhcC
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRG-------YTVKASVRDPNDPKKTRHLLALDGASERL-QLFKANLLEEGSFDSIVDG 81 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~ 81 (281)
.+|+||||+|+||++++..|+..+ .+|+++++.+.. +.+.... .+. .+. .....|+....++.+.+++
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~-~~~~g~~-~Dl--~d~~~~~~~~~~~~~~~~~~l~~ 78 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPAL-KALEGVV-MEL--QDCAFPLLKSVVATTDPEEAFKD 78 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCcc-cccccee-eeh--hhccccccCCceecCCHHHHhCC
Confidence 479999999999999999999854 589999996532 1111100 000 011 1223466556677788899
Q ss_pred CcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEecc
Q 023515 82 CDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSS 132 (281)
Q Consensus 82 ~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS 132 (281)
+|+|||+||....... ...+.++.|+.-...+.....++. ....+|.+|.
T Consensus 79 aDiVI~tAG~~~~~~~-~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (325)
T cd01336 79 VDVAILVGAMPRKEGM-ERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN 129 (325)
T ss_pred CCEEEEeCCcCCCCCC-CHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 9999999998654332 235888999999999999888873 2334555553
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.5e-09 Score=91.92 Aligned_cols=77 Identities=18% Similarity=0.268 Sum_probs=66.7
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 87 (281)
||+|+|.|| |+||+.++..|+++| ++|++.+|+.++..++.... ..++++++.|+.|.+++.+++++.|+|||
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~-----~~~v~~~~vD~~d~~al~~li~~~d~VIn 74 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI-----GGKVEALQVDAADVDALVALIKDFDLVIN 74 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc-----cccceeEEecccChHHHHHHHhcCCEEEE
Confidence 568999998 999999999999999 89999999987766643321 13799999999999999999999999999
Q ss_pred eccc
Q 023515 88 TASP 91 (281)
Q Consensus 88 ~a~~ 91 (281)
++.+
T Consensus 75 ~~p~ 78 (389)
T COG1748 75 AAPP 78 (389)
T ss_pred eCCc
Confidence 9854
|
|
| >PRK09620 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.7e-09 Score=84.91 Aligned_cols=79 Identities=22% Similarity=0.239 Sum_probs=55.1
Q ss_pred cCCCeEEEeCCc----------------hHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCC
Q 023515 7 AAGKVVCVTGAS----------------GYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLL 70 (281)
Q Consensus 7 ~~~~~ilItGat----------------G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 70 (281)
+++|+||||+|. ||+|++|+++|+++|++|+++++....... .. .....+..+.++..
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~~~~~~--~~----~~~~~~~~V~s~~d 74 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYFAEKPN--DI----NNQLELHPFEGIID 74 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCCcCCCc--cc----CCceeEEEEecHHH
Confidence 358999999875 999999999999999999999864221110 00 00123445666443
Q ss_pred CcCcHHHHhc--CCcEeEEeccc
Q 023515 71 EEGSFDSIVD--GCDGVCHTASP 91 (281)
Q Consensus 71 ~~~~~~~~~~--~~d~Vih~a~~ 91 (281)
..+.+.++++ ++|+|||+||.
T Consensus 75 ~~~~l~~~~~~~~~D~VIH~AAv 97 (229)
T PRK09620 75 LQDKMKSIITHEKVDAVIMAAAG 97 (229)
T ss_pred HHHHHHHHhcccCCCEEEECccc
Confidence 3356777774 68999999997
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.2e-08 Score=83.04 Aligned_cols=171 Identities=12% Similarity=0.026 Sum_probs=111.8
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCC-------EEEEEEcCCCC--cchhhhhhhcc--CCCCcEEEEEcCCCCcCcHHH
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGY-------TVKASVRDPND--PKKTRHLLALD--GASERLQLFKANLLEEGSFDS 77 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~--~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~ 77 (281)
.+||.|+|++|.||+.++..|+..|. +++++++.+.. ........... ....+++ ++ ....+
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~-----i~--~~~~~ 74 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIV-----IT--DDPNV 74 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceE-----Ee--cCcHH
Confidence 45899999999999999999998873 79999985432 22211111100 0001121 11 12345
Q ss_pred HhcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCC-ccEEEEeccceeeecCCCCCCCCeeeecCCC-C
Q 023515 78 IVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAVLNTGKPRTPDVVVDETWF-S 155 (281)
Q Consensus 78 ~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~-~ 155 (281)
.++++|+||.+||......+ ...+.++.|+.-.+.+.....++.. ...+|.+|...-. .. ..+..... .
T Consensus 75 ~~~daDivvitaG~~~k~g~-tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~-------~t-~~~~k~sg~~ 145 (322)
T cd01338 75 AFKDADWALLVGAKPRGPGM-ERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNT-------NA-LIAMKNAPDI 145 (322)
T ss_pred HhCCCCEEEEeCCCCCCCCC-cHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHH-------HH-HHHHHHcCCC
Confidence 67899999999997554333 3348899999999999999999842 3445555431100 00 00011110 1
Q ss_pred ChhhhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCC
Q 023515 156 DPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPL 201 (281)
Q Consensus 156 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~ 201 (281)
. ....|+.++...+++...+++.+|++...+|..+|||+.
T Consensus 146 p------~~~ViG~t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeH 185 (322)
T cd01338 146 P------PDNFTAMTRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNH 185 (322)
T ss_pred C------hHheEEehHHHHHHHHHHHHHHhCcChhHeEEEEEEeCC
Confidence 1 124599999999999999999999999999999999986
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK06732 phosphopantothenate--cysteine ligase; Validated | Back alignment and domain information |
|---|
Probab=98.77 E-value=4e-08 Score=79.81 Aligned_cols=93 Identities=12% Similarity=0.108 Sum_probs=56.7
Q ss_pred CCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCC--cCcHHHHhcCCcEeEEecccCC
Q 023515 16 GASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE--EGSFDSIVDGCDGVCHTASPFY 93 (281)
Q Consensus 16 GatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~d~Vih~a~~~~ 93 (281)
.+||++|++|+++|+++|++|++++|....... ...++.++..+-.+ .+.+.+.++++|+|||+||...
T Consensus 23 ~SSG~iG~aLA~~L~~~G~~V~li~r~~~~~~~---------~~~~v~~i~v~s~~~m~~~l~~~~~~~DivIh~AAvsd 93 (229)
T PRK06732 23 HSTGQLGKIIAETFLAAGHEVTLVTTKTAVKPE---------PHPNLSIIEIENVDDLLETLEPLVKDHDVLIHSMAVSD 93 (229)
T ss_pred ccchHHHHHHHHHHHhCCCEEEEEECcccccCC---------CCCCeEEEEEecHHHHHHHHHHHhcCCCEEEeCCccCC
Confidence 458999999999999999999999876421110 01245555543322 2345556678999999999754
Q ss_pred CCCCCccchhhhhHHHHHHHHHHHhhh
Q 023515 94 HDAKDPQVELLDPAVKGTLNVLNSCAK 120 (281)
Q Consensus 94 ~~~~~~~~~~~~~n~~~~~~l~~~~~~ 120 (281)
.... ...-..+...+.++.+++++
T Consensus 94 ~~~~---~~~~~~~~~~~~~v~~~~~~ 117 (229)
T PRK06732 94 YTPV---YMTDLEEVSASDNLNEFLTK 117 (229)
T ss_pred ceeh---hhhhhhhhhhhhhhhhhhcc
Confidence 2111 11112344455566666654
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=3e-07 Score=78.18 Aligned_cols=115 Identities=19% Similarity=0.108 Sum_probs=79.8
Q ss_pred CeEEEeCCchHHHHHHHHHHHH-C--CCEEEEEEcCCCCcchh-hhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 10 KVVCVTGASGYIASWLVKLLLS-R--GYTVKASVRDPNDPKKT-RHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~-~--g~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
|||+|.||+|.||++++..|.. . ++++++++|++. .... -++. .. .....+.+ .+.+++.+.++++|+|
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~-~~g~alDl~--~~--~~~~~i~~--~~~~d~~~~l~~~DiV 73 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV-TPGVAVDLS--HI--PTAVKIKG--FSGEDPTPALEGADVV 73 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC-Ccceehhhh--cC--CCCceEEE--eCCCCHHHHcCCCCEE
Confidence 5899999999999999998855 2 467888888643 2110 0110 00 11122333 2345566677899999
Q ss_pred EEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccc
Q 023515 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (281)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (281)
|.++|....... ...+.+..|......+++.+.++ +.+++|.+.|-
T Consensus 74 IitaG~~~~~~~-~R~dll~~N~~i~~~ii~~i~~~-~~~~ivivvsN 119 (312)
T PRK05086 74 LISAGVARKPGM-DRSDLFNVNAGIVKNLVEKVAKT-CPKACIGIITN 119 (312)
T ss_pred EEcCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccC
Confidence 999997554333 33488899999999999999998 77788887773
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.1e-07 Score=78.30 Aligned_cols=113 Identities=15% Similarity=0.039 Sum_probs=74.8
Q ss_pred eEEEeCCchHHHHHHHHHHHHCC-------CEEEEEEcCC--CCcchhhhhhhcc--CCCCcEEEEEcCCCCcCcHHHHh
Q 023515 11 VVCVTGASGYIASWLVKLLLSRG-------YTVKASVRDP--NDPKKTRHLLALD--GASERLQLFKANLLEEGSFDSIV 79 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g-------~~V~~~~r~~--~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~ 79 (281)
||.|+||+|.||+.++..|+..| ++++++++++ +..+......... ....+. .++ ....+.+
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~-----~i~--~~~~~~~ 74 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGV-----VIT--TDPEEAF 74 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCc-----EEe--cChHHHh
Confidence 69999999999999999999865 2589999876 3221111100000 000011 111 3456778
Q ss_pred cCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEec
Q 023515 80 DGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTS 131 (281)
Q Consensus 80 ~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~S 131 (281)
+++|+|||+||......+ ...+.++.|..-.+.+.....++. +...+|.+|
T Consensus 75 ~~aDiVVitAG~~~~~g~-tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 126 (323)
T cd00704 75 KDVDVAILVGAFPRKPGM-ERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG 126 (323)
T ss_pred CCCCEEEEeCCCCCCcCC-cHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 899999999997554433 344888999999999999999983 344455554
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.1e-08 Score=77.39 Aligned_cols=81 Identities=20% Similarity=0.196 Sum_probs=62.1
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+++++++|+||+|.+|+.+++.|+++|++|+++.|+.++...+....... .+......|..+.+++.++++++|+||
T Consensus 26 l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~diVi 102 (194)
T cd01078 26 LKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRAR---FGEGVGAVETSDDAARAAAIKGADVVF 102 (194)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhh---cCCcEEEeeCCCHHHHHHHHhcCCEEE
Confidence 46789999999999999999999999999999999865544433322111 134455678888888888899999999
Q ss_pred Eecc
Q 023515 87 HTAS 90 (281)
Q Consensus 87 h~a~ 90 (281)
++.+
T Consensus 103 ~at~ 106 (194)
T cd01078 103 AAGA 106 (194)
T ss_pred ECCC
Confidence 8653
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=98.60 E-value=1e-07 Score=83.88 Aligned_cols=76 Identities=29% Similarity=0.579 Sum_probs=59.0
Q ss_pred EEEeCCchHHHHHHHHHHHHCC-C-EEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEec
Q 023515 12 VCVTGASGYIASWLVKLLLSRG-Y-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (281)
Q Consensus 12 ilItGatG~iG~~l~~~L~~~g-~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a 89 (281)
|+|.|| |++|+.+++.|++++ + +|++.+|+..+.+.+.... ...++.+++.|+.|.+++.+++++.|+|||++
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~ 75 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL----LGDRVEAVQVDVNDPESLAELLRGCDVVINCA 75 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT------TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-S
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc----cccceeEEEEecCCHHHHHHHHhcCCEEEECC
Confidence 789999 999999999999987 4 8999999987655543321 23589999999999999999999999999999
Q ss_pred ccC
Q 023515 90 SPF 92 (281)
Q Consensus 90 ~~~ 92 (281)
++.
T Consensus 76 gp~ 78 (386)
T PF03435_consen 76 GPF 78 (386)
T ss_dssp SGG
T ss_pred ccc
Confidence 763
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.2e-07 Score=83.02 Aligned_cols=72 Identities=21% Similarity=0.134 Sum_probs=57.0
Q ss_pred cCCCeEEEeCC----------------chHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCC
Q 023515 7 AAGKVVCVTGA----------------SGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLL 70 (281)
Q Consensus 7 ~~~~~ilItGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 70 (281)
+++++|+|||| ||.+|.+++++|.++|++|+++++... ... ... ....|++
T Consensus 186 l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~-~~~----------~~~--~~~~dv~ 252 (399)
T PRK05579 186 LAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVN-LPT----------PAG--VKRIDVE 252 (399)
T ss_pred cCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCcc-ccC----------CCC--cEEEccC
Confidence 57899999999 899999999999999999999988652 110 012 2357888
Q ss_pred CcCcHHHHhc----CCcEeEEeccc
Q 023515 71 EEGSFDSIVD----GCDGVCHTASP 91 (281)
Q Consensus 71 ~~~~~~~~~~----~~d~Vih~a~~ 91 (281)
+.+++.++++ ++|++||+||+
T Consensus 253 ~~~~~~~~v~~~~~~~DilI~~Aav 277 (399)
T PRK05579 253 SAQEMLDAVLAALPQADIFIMAAAV 277 (399)
T ss_pred CHHHHHHHHHHhcCCCCEEEEcccc
Confidence 8877776664 68999999996
|
|
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.1e-06 Score=74.93 Aligned_cols=106 Identities=17% Similarity=0.082 Sum_probs=73.9
Q ss_pred eEEEeCCchHHHHHHHHHHHHCC-C------EEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCc-----------
Q 023515 11 VVCVTGASGYIASWLVKLLLSRG-Y------TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEE----------- 72 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g-~------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~----------- 72 (281)
+|.|+|++|.||++++..|...+ . +++++++.+.... ......|+.|.
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~--------------a~g~~~Dl~d~~~~~~~~~~~~ 66 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKV--------------LEGVVMELMDCAFPLLDGVVPT 66 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccc--------------cceeEeehhcccchhcCceecc
Confidence 58999999999999999999855 2 6889998654210 11111222222
Q ss_pred CcHHHHhcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEec
Q 023515 73 GSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTS 131 (281)
Q Consensus 73 ~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~S 131 (281)
....+.++++|+|||+||...... ..+.+.++.|+.-.+.+.....++. +...+|.+|
T Consensus 67 ~~~~~~~~~aDiVVitAG~~~~~~-~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs 125 (324)
T TIGR01758 67 HDPAVAFTDVDVAILVGAFPRKEG-MERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG 125 (324)
T ss_pred CChHHHhCCCCEEEEcCCCCCCCC-CcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 134567889999999999755432 3356889999999999999999973 334455555
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.1e-07 Score=74.23 Aligned_cols=73 Identities=12% Similarity=0.174 Sum_probs=55.8
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--CCcEeEE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVCH 87 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~Vih 87 (281)
|+|||+||||. |+.|++.|.++|++|++..+.......+.. .+...+..+..+.+++.++++ ++|+||+
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~~--------~g~~~v~~g~l~~~~l~~~l~~~~i~~VID 71 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHLYPI--------HQALTVHTGALDPQELREFLKRHSIDILVD 71 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCccccccc--------cCCceEEECCCCHHHHHHHHHhcCCCEEEE
Confidence 47999999999 999999999999999999998865444222 122344455567777878776 6999999
Q ss_pred eccc
Q 023515 88 TASP 91 (281)
Q Consensus 88 ~a~~ 91 (281)
.+.+
T Consensus 72 AtHP 75 (256)
T TIGR00715 72 ATHP 75 (256)
T ss_pred cCCH
Confidence 8754
|
This enzyme was found to be a monomer by gel filtration. |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.5e-07 Score=67.07 Aligned_cols=114 Identities=18% Similarity=0.170 Sum_probs=77.0
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCCcchhhhhhhc--cCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLAL--DGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
|||.|+|++|.+|++++..|+..+ .+++++++.++..+......+. .....+..... .+ .+.++++|+|
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~---~~----~~~~~~aDiv 73 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS---GD----YEALKDADIV 73 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE---SS----GGGGTTESEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccc---cc----ccccccccEE
Confidence 589999999999999999999987 6899999986544332222111 11111222222 22 3456689999
Q ss_pred EEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEec
Q 023515 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131 (281)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S 131 (281)
|-+||........ ..+.++.|..-.+.+.+...++.....++.+|
T Consensus 74 vitag~~~~~g~s-R~~ll~~N~~i~~~~~~~i~~~~p~~~vivvt 118 (141)
T PF00056_consen 74 VITAGVPRKPGMS-RLDLLEANAKIVKEIAKKIAKYAPDAIVIVVT 118 (141)
T ss_dssp EETTSTSSSTTSS-HHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-S
T ss_pred EEecccccccccc-HHHHHHHhHhHHHHHHHHHHHhCCccEEEEeC
Confidence 9999975543333 44888999999999999999984334455444
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.9e-07 Score=78.40 Aligned_cols=73 Identities=23% Similarity=0.219 Sum_probs=53.9
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHC-C-CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSR-G-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~-g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~ 84 (281)
+++++|+||||+|+||+.++++|+++ | .+++++.|+..+...+... +..+++. ++.+++.++|+
T Consensus 153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~e-----------l~~~~i~---~l~~~l~~aDi 218 (340)
T PRK14982 153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAE-----------LGGGKIL---SLEEALPEADI 218 (340)
T ss_pred cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHH-----------hccccHH---hHHHHHccCCE
Confidence 56899999999999999999999865 5 6899998876544332221 1123333 36678889999
Q ss_pred eEEecccCC
Q 023515 85 VCHTASPFY 93 (281)
Q Consensus 85 Vih~a~~~~ 93 (281)
|||+++...
T Consensus 219 Vv~~ts~~~ 227 (340)
T PRK14982 219 VVWVASMPK 227 (340)
T ss_pred EEECCcCCc
Confidence 999998543
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.1e-07 Score=76.64 Aligned_cols=82 Identities=13% Similarity=0.094 Sum_probs=60.5
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCE-EEEEEcCC---CCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCC
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYT-VKASVRDP---NDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGC 82 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~-V~~~~r~~---~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 82 (281)
+++++++|+|| |++|++++..|++.|.+ |++++|+. ++.+.+.+..... ...+.+...|+.+.+++...++.+
T Consensus 124 ~~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~--~~~~~~~~~d~~~~~~~~~~~~~~ 200 (289)
T PRK12548 124 VKGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQE--VPECIVNVYDLNDTEKLKAEIASS 200 (289)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhc--CCCceeEEechhhhhHHHhhhccC
Confidence 45789999998 89999999999999975 99999986 3333332222111 123456678888877788888889
Q ss_pred cEeEEeccc
Q 023515 83 DGVCHTASP 91 (281)
Q Consensus 83 d~Vih~a~~ 91 (281)
|+|||+...
T Consensus 201 DilINaTp~ 209 (289)
T PRK12548 201 DILVNATLV 209 (289)
T ss_pred CEEEEeCCC
Confidence 999998643
|
|
| >TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.4e-07 Score=75.17 Aligned_cols=86 Identities=9% Similarity=0.002 Sum_probs=53.0
Q ss_pred CCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHh-------cCCcEeEEe
Q 023515 16 GASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV-------DGCDGVCHT 88 (281)
Q Consensus 16 GatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-------~~~d~Vih~ 88 (281)
.+||+||+++++.|+++|++|+++++... . .. .....+|+.+.+...+++ .++|++||+
T Consensus 22 ~SSGgIG~AIA~~la~~Ga~Vvlv~~~~~-l---~~----------~~~~~~Dv~d~~s~~~l~~~v~~~~g~iDiLVnn 87 (227)
T TIGR02114 22 HSTGHLGKIITETFLSAGHEVTLVTTKRA-L---KP----------EPHPNLSIREIETTKDLLITLKELVQEHDILIHS 87 (227)
T ss_pred CcccHHHHHHHHHHHHCCCEEEEEcChhh-c---cc----------ccCCcceeecHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 34899999999999999999999876321 0 00 001246777766655543 368999999
Q ss_pred cccCCC--CCCCccchhhhhHHHHHHHHH
Q 023515 89 ASPFYH--DAKDPQVELLDPAVKGTLNVL 115 (281)
Q Consensus 89 a~~~~~--~~~~~~~~~~~~n~~~~~~l~ 115 (281)
||.... ......+++.+++..+++.+.
T Consensus 88 Agv~d~~~~~~~s~e~~~~~~~~~~~~~~ 116 (227)
T TIGR02114 88 MAVSDYTPVYMTDLEQVQASDNLNEFLSK 116 (227)
T ss_pred CEeccccchhhCCHHHHhhhcchhhhhcc
Confidence 996321 112223344444444444333
|
In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity. |
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=98.38 E-value=3e-06 Score=72.10 Aligned_cols=117 Identities=19% Similarity=0.149 Sum_probs=75.3
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCC--EEEEEEcCC--CCcchhhhhhhcc--CCCCcEEEEEcCCCCcCcHHHHhcCCc
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDP--NDPKKTRHLLALD--GASERLQLFKANLLEEGSFDSIVDGCD 83 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~r~~--~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~d 83 (281)
|+|.|+|+||.+|..++..|+..|+ +|++++|.. ++........... ...... +++...+.+ .++++|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~-----~i~~~~d~~-~l~~aD 74 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDA-----EIKISSDLS-DVAGSD 74 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCc-----EEEECCCHH-HhCCCC
Confidence 5899999999999999999999985 599999954 2221111111000 000011 121112233 488999
Q ss_pred EeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccc
Q 023515 84 GVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (281)
Q Consensus 84 ~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (281)
+||-++|....... ...+.++.|+.-...+.+...+......+|.+++.
T Consensus 75 iViitag~p~~~~~-~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~np 123 (309)
T cd05294 75 IVIITAGVPRKEGM-SRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNP 123 (309)
T ss_pred EEEEecCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 99999986544322 22477888999999999988887444467776663
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >KOG2733 consensus Uncharacterized membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.2e-06 Score=73.35 Aligned_cols=84 Identities=17% Similarity=0.290 Sum_probs=65.3
Q ss_pred eEEEeCCchHHHHHHHHHHHH----CCCEEEEEEcCCCCcchhhhhhhc-c-CCCCcEEEEEcCCCCcCcHHHHhcCCcE
Q 023515 11 VVCVTGASGYIASWLVKLLLS----RGYTVKASVRDPNDPKKTRHLLAL-D-GASERLQLFKANLLEEGSFDSIVDGCDG 84 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~----~g~~V~~~~r~~~~~~~~~~~~~~-~-~~~~~~~~~~~D~~~~~~~~~~~~~~d~ 84 (281)
.++|-|||||.|..+++++++ +|...-+..|++.+....-+.... . .+......+.+|..|++++.+.++++-+
T Consensus 7 DvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~emak~~~v 86 (423)
T KOG2733|consen 7 DVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMAKQARV 86 (423)
T ss_pred eEEEEccccccceeeHHHHhhhhcccCceEEEecCCHHHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHHhhhEE
Confidence 589999999999999999999 678888888888765443222211 1 1112334899999999999999999999
Q ss_pred eEEecccCCC
Q 023515 85 VCHTASPFYH 94 (281)
Q Consensus 85 Vih~a~~~~~ 94 (281)
|+||+|+...
T Consensus 87 ivN~vGPyR~ 96 (423)
T KOG2733|consen 87 IVNCVGPYRF 96 (423)
T ss_pred EEecccccee
Confidence 9999998554
|
|
| >TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.4e-06 Score=76.08 Aligned_cols=102 Identities=15% Similarity=0.098 Sum_probs=70.9
Q ss_pred cCCCeEEEeCC----------------chHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCC
Q 023515 7 AAGKVVCVTGA----------------SGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLL 70 (281)
Q Consensus 7 ~~~~~ilItGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 70 (281)
+++++|+|||| ||.+|.+++++|..+|++|+++.+...... ...+ ...|++
T Consensus 183 ~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~~~-----------~~~~--~~~~v~ 249 (390)
T TIGR00521 183 LEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVSLLT-----------PPGV--KSIKVS 249 (390)
T ss_pred cCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCccCC-----------CCCc--EEEEec
Confidence 67899999998 467999999999999999999887653210 0122 446888
Q ss_pred CcCcH-HHHh----cCCcEeEEecccCCCCC----CCcc---chhhhhHHHHHHHHHHHhhhC
Q 023515 71 EEGSF-DSIV----DGCDGVCHTASPFYHDA----KDPQ---VELLDPAVKGTLNVLNSCAKF 121 (281)
Q Consensus 71 ~~~~~-~~~~----~~~d~Vih~a~~~~~~~----~~~~---~~~~~~n~~~~~~l~~~~~~~ 121 (281)
+.+++ ++++ .+.|++|++||+..... ...+ ...+..|+.-+..+++...+.
T Consensus 250 ~~~~~~~~~~~~~~~~~D~~i~~Aavsd~~~~~~~~~Ki~~~~~~~~l~L~~~pdil~~l~~~ 312 (390)
T TIGR00521 250 TAEEMLEAALNELAKDFDIFISAAAVADFKPKTVFEGKIKKQGEELSLKLVKNPDIIAEVRKI 312 (390)
T ss_pred cHHHHHHHHHHhhcccCCEEEEccccccccccccccccccccCCceeEEEEeCcHHHHHHHhh
Confidence 87776 5444 36899999999732211 1111 123456788888888888865
|
This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity. |
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.2e-05 Score=68.60 Aligned_cols=116 Identities=14% Similarity=0.133 Sum_probs=78.3
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCC--EEEEEEcCCCCcchhhhhhhcc-CCCCcEEEEEcCCCCcCcHHHHhcCCc
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLALD-GASERLQLFKANLLEEGSFDSIVDGCD 83 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~d 83 (281)
-.++||.|+|+ |.+|..++..|+..|. ++.+++++.+............ ....++.... .+. +.++++|
T Consensus 4 ~~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~------~~~-~~~~~ad 75 (315)
T PRK00066 4 KQHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYA------GDY-SDCKDAD 75 (315)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEe------CCH-HHhCCCC
Confidence 34679999998 9999999999999884 8999999776544332222111 1001222221 123 3468999
Q ss_pred EeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEec
Q 023515 84 GVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131 (281)
Q Consensus 84 ~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S 131 (281)
+||-.||........ ..+.++.|..-.+.+++.+.++.....++.+|
T Consensus 76 ivIitag~~~k~g~~-R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 76 LVVITAGAPQKPGET-RLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred EEEEecCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 999999975543333 34888999999999999999873333455554
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.5e-05 Score=67.79 Aligned_cols=114 Identities=14% Similarity=0.095 Sum_probs=78.0
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCCcchhhhhhhcc--CCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALD--GASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
++|.|.|+ |.+|+.++..|+..| +++++++|++++.+.+....... ..........+ ..+ .++++|+|
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~------~~~-~l~~aDIV 72 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAG------DYS-DCKDADIV 72 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcC------CHH-HhCCCCEE
Confidence 47999995 999999999999999 68999999887665543322111 00112222211 123 36799999
Q ss_pred EEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
|+++|......+. ..+.++.|..-.+.+.+...++.....++.+|-
T Consensus 73 Iitag~~~~~g~~-R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsN 118 (306)
T cd05291 73 VITAGAPQKPGET-RLDLLEKNAKIMKSIVPKIKASGFDGIFLVASN 118 (306)
T ss_pred EEccCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 9999875544333 348889999999999999999844444555553
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.17 E-value=5.1e-05 Score=64.35 Aligned_cols=174 Identities=17% Similarity=0.091 Sum_probs=100.0
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 87 (281)
|||.|+|++|.+|++++..|+.++ .++++++.+..+.+.++ + .... .... +.+ ....+++.+.++++|+||-
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alD-L-~~~~--~~~~-i~~-~~~~~~~y~~~~daDivvi 74 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAAD-L-SHIN--TPAK-VTG-YLGPEELKKALKGADVVVI 74 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehH-h-HhCC--Ccce-EEE-ecCCCchHHhcCCCCEEEE
Confidence 479999999999999999999888 58999988722222211 1 0000 0111 111 1022335567889999999
Q ss_pred ecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchh
Q 023515 88 TASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWY 167 (281)
Q Consensus 88 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y 167 (281)
+||......+. ..+.++.|..-.+.+.+...++.....+|.+|--.-... + .-...+.......+ ....
T Consensus 75 taG~~~k~g~t-R~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~---~-i~t~~~~~~s~~p~------~rvi 143 (310)
T cd01337 75 PAGVPRKPGMT-RDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTV---P-IAAEVLKKAGVYDP------KRLF 143 (310)
T ss_pred eCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHH---H-HHHHHHHHhcCCCH------HHEE
Confidence 99975544333 348899999999999999999844445555554320000 0 00000000000000 0123
Q ss_pred hhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCC
Q 023515 168 PLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPL 201 (281)
Q Consensus 168 ~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~ 201 (281)
|.+-.-.-++-..+++..|+....++ +.|+|..
T Consensus 144 G~~~LDs~R~~~~la~~l~v~~~~V~-~~v~GeH 176 (310)
T cd01337 144 GVTTLDVVRANTFVAELLGLDPAKVN-VPVIGGH 176 (310)
T ss_pred eeechHHHHHHHHHHHHhCcCHHHEE-EEEEecC
Confidence 33334445666666677787766666 6777765
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.11 E-value=8.5e-06 Score=77.61 Aligned_cols=166 Identities=14% Similarity=0.155 Sum_probs=117.9
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhh-hhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHL-LALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
.|..+|+||-|+.|-+|+.-|..+|. .+++..|+.-++..-... .++....-.+.+-..|++..+....+++
T Consensus 1768 eksYii~GGLGGFGLELaqWLi~RGar~lVLtSRsGirtGYQa~~vrrWr~~GVqV~vsT~nitt~~ga~~Li~~s~kl~ 1847 (2376)
T KOG1202|consen 1768 EKSYIIVGGLGGFGLELAQWLIQRGARKLVLTSRSGIRTGYQALMVRRWRRRGVQVQVSTSNITTAEGARGLIEESNKLG 1847 (2376)
T ss_pred cceEEEeccccchhHHHHHHHHhcCceEEEEeccccchhhHHHHHHHHHHhcCeEEEEecccchhhhhHHHHHHHhhhcc
Confidence 57899999999999999999999996 577778876655442111 1121112345556677877666666665
Q ss_pred CCcEeEEeccc-----CCCCCCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCCCCCeeeecCCC
Q 023515 81 GCDGVCHTASP-----FYHDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWF 154 (281)
Q Consensus 81 ~~d~Vih~a~~-----~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~ 154 (281)
.+-.|||+|+. +.+...++++..-+.-+.||.+|-..-++.+ ..+.||.+||.+.-.|+.+
T Consensus 1848 ~vGGiFnLA~VLRD~LiEnQt~knFk~va~pK~~~Ti~LD~~sRe~C~~LdyFv~FSSvscGRGN~G------------- 1914 (2376)
T KOG1202|consen 1848 PVGGIFNLAAVLRDGLIENQTPKNFKDVAKPKYSGTINLDRVSREICPELDYFVVFSSVSCGRGNAG------------- 1914 (2376)
T ss_pred cccchhhHHHHHHhhhhcccChhHHHhhhccceeeeeehhhhhhhhCcccceEEEEEeecccCCCCc-------------
Confidence 45789999975 4444455566677778889999988888874 3678999999765443321
Q ss_pred CChhhhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcc
Q 023515 155 SDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMV 197 (281)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v 197 (281)
++-||.+-.+.|+.+.+- +.+|++.+.|--|.|
T Consensus 1915 ---------QtNYG~aNS~MERiceqR-r~~GfPG~AiQWGAI 1947 (2376)
T KOG1202|consen 1915 ---------QTNYGLANSAMERICEQR-RHEGFPGTAIQWGAI 1947 (2376)
T ss_pred ---------ccccchhhHHHHHHHHHh-hhcCCCcceeeeecc
Confidence 234999999999999876 456888887776554
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.3e-05 Score=64.96 Aligned_cols=73 Identities=16% Similarity=0.208 Sum_probs=59.2
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHH-hcCCcEeEEe
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI-VDGCDGVCHT 88 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~Vih~ 88 (281)
|+++|.|+ |-+|+.+|+.|.++|++|++++++++........ ......+++|-++++.++++ ++++|++|-.
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~------~~~~~~v~gd~t~~~~L~~agi~~aD~vva~ 73 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEGHNVVLIDRDEERVEEFLAD------ELDTHVVIGDATDEDVLEEAGIDDADAVVAA 73 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh------hcceEEEEecCCCHHHHHhcCCCcCCEEEEe
Confidence 57889985 9999999999999999999999988764431110 13578899999999999988 7789999865
Q ss_pred c
Q 023515 89 A 89 (281)
Q Consensus 89 a 89 (281)
.
T Consensus 74 t 74 (225)
T COG0569 74 T 74 (225)
T ss_pred e
Confidence 4
|
|
| >PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.1e-05 Score=62.97 Aligned_cols=74 Identities=16% Similarity=0.161 Sum_probs=45.6
Q ss_pred cCCCeEEEeCC----------------chHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCC
Q 023515 7 AAGKVVCVTGA----------------SGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLL 70 (281)
Q Consensus 7 ~~~~~ilItGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 70 (281)
+++|+||||+| ||..|.+|++++..+|++|+.+..... ... +..+..+. +.
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~-~~~----------p~~~~~i~--v~ 67 (185)
T PF04127_consen 1 LKGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSS-LPP----------PPGVKVIR--VE 67 (185)
T ss_dssp -TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS---------------TTEEEEE---S
T ss_pred CCCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCcc-ccc----------cccceEEE--ec
Confidence 35889999965 689999999999999999999987642 111 12455544 33
Q ss_pred CcCc----HHHHhcCCcEeEEecccCC
Q 023515 71 EEGS----FDSIVDGCDGVCHTASPFY 93 (281)
Q Consensus 71 ~~~~----~~~~~~~~d~Vih~a~~~~ 93 (281)
..++ +.+.++..|++||+||+..
T Consensus 68 sa~em~~~~~~~~~~~Di~I~aAAVsD 94 (185)
T PF04127_consen 68 SAEEMLEAVKELLPSADIIIMAAAVSD 94 (185)
T ss_dssp SHHHHHHHHHHHGGGGSEEEE-SB--S
T ss_pred chhhhhhhhccccCcceeEEEecchhh
Confidence 3333 3344457899999999733
|
These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A. |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00011 Score=62.96 Aligned_cols=123 Identities=17% Similarity=0.098 Sum_probs=78.5
Q ss_pred hhccCCCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcc--hhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc
Q 023515 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPK--KTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (281)
Q Consensus 4 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 80 (281)
|.|.+++||.|.| +|.+|+.++..|+..| .+|++++++++... .+..............+. ...+.+ .++
T Consensus 1 ~~~~~~~KI~IIG-aG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~-----~~~d~~-~l~ 73 (321)
T PTZ00082 1 MTMIKRRKISLIG-SGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVI-----GTNNYE-DIA 73 (321)
T ss_pred CCCCCCCEEEEEC-CCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEE-----ECCCHH-HhC
Confidence 4456778999999 5999999999999999 48999998876532 111111111001112221 112233 568
Q ss_pred CCcEeEEecccCCCCCC----CccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccc
Q 023515 81 GCDGVCHTASPFYHDAK----DPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (281)
Q Consensus 81 ~~d~Vih~a~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (281)
++|+||.+|+....... ....+.+..|+.-.+.+.+.+.+..+...++.+|-.
T Consensus 74 ~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP 130 (321)
T PTZ00082 74 GSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNP 130 (321)
T ss_pred CCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 99999999986443222 023467778999888999998887433366666653
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0001 Score=62.57 Aligned_cols=115 Identities=16% Similarity=0.093 Sum_probs=76.0
Q ss_pred eEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEe
Q 023515 11 VVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~ 88 (281)
||.|+|++|.||++++..|+.++ .+++++++.+.....++ +. +.. ..... .+ ..+.+++.+.++++|+||-+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~D-L~--~~~-~~~~i-~~-~~~~~~~~~~~~daDivvit 74 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAAD-LS--HIP-TAASV-KG-FSGEEGLENALKGADVVVIP 74 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEch-hh--cCC-cCceE-EE-ecCCCchHHHcCCCCEEEEe
Confidence 58999999999999999999887 47999998763322211 10 110 11111 11 00112356678899999999
Q ss_pred cccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 89 ASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 89 a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
||........ ..+.++.|..-.+.+.+...++.....+|.+|-
T Consensus 75 aG~~~~~g~~-R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN 117 (312)
T TIGR01772 75 AGVPRKPGMT-RDDLFNVNAGIVKDLVAAVAESCPKAMILVITN 117 (312)
T ss_pred CCCCCCCCcc-HHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 9975443333 348889999999999999998833344555554
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.7e-05 Score=71.36 Aligned_cols=76 Identities=24% Similarity=0.208 Sum_probs=55.0
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhh-hhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHL-LALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
+++|+|+|+|+++ +|..+++.|+++|++|++.++..... +.+. ..+. ..++.++.+|..+ ....++|+|
T Consensus 3 ~~~k~v~iiG~g~-~G~~~A~~l~~~G~~V~~~d~~~~~~--~~~~~~~l~--~~~~~~~~~~~~~-----~~~~~~d~v 72 (450)
T PRK14106 3 LKGKKVLVVGAGV-SGLALAKFLKKLGAKVILTDEKEEDQ--LKEALEELG--ELGIELVLGEYPE-----EFLEGVDLV 72 (450)
T ss_pred cCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCchHH--HHHHHHHHH--hcCCEEEeCCcch-----hHhhcCCEE
Confidence 5689999999877 99999999999999999999875221 1111 1111 1246677788765 345678999
Q ss_pred EEecccC
Q 023515 86 CHTASPF 92 (281)
Q Consensus 86 ih~a~~~ 92 (281)
|++++..
T Consensus 73 v~~~g~~ 79 (450)
T PRK14106 73 VVSPGVP 79 (450)
T ss_pred EECCCCC
Confidence 9998863
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=98.03 E-value=5.3e-06 Score=61.72 Aligned_cols=77 Identities=19% Similarity=0.248 Sum_probs=56.1
Q ss_pred hccCCCeEEEeCCchHHHHHHHHHHHHCCCE-EEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCc
Q 023515 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYT-VKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCD 83 (281)
Q Consensus 5 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d 83 (281)
..+++++++|.|+ |.+|+.++..|.+.|.+ |+++.|+.++...+..... ...+.++. + +++...++++|
T Consensus 8 ~~l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~----~~~~~~~~--~---~~~~~~~~~~D 77 (135)
T PF01488_consen 8 GDLKGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERAEALAEEFG----GVNIEAIP--L---EDLEEALQEAD 77 (135)
T ss_dssp STGTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHT----GCSEEEEE--G---GGHCHHHHTES
T ss_pred CCcCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcC----ccccceee--H---HHHHHHHhhCC
Confidence 3577999999997 88999999999999965 9999998877666554431 12344432 2 34556777899
Q ss_pred EeEEeccc
Q 023515 84 GVCHTASP 91 (281)
Q Consensus 84 ~Vih~a~~ 91 (281)
+||++.+.
T Consensus 78 ivI~aT~~ 85 (135)
T PF01488_consen 78 IVINATPS 85 (135)
T ss_dssp EEEE-SST
T ss_pred eEEEecCC
Confidence 99998753
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00064 Score=50.99 Aligned_cols=187 Identities=15% Similarity=0.137 Sum_probs=106.0
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCc-------HHHHh--
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGS-------FDSIV-- 79 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-------~~~~~-- 79 (281)
..+|+|-||-|-+|+++++.+.+++|-|.-++..+.+... .. ..+.+|-.=.+. +-..+
T Consensus 3 agrVivYGGkGALGSacv~~FkannywV~siDl~eNe~Ad-----------~s-I~V~~~~swtEQe~~v~~~vg~sL~g 70 (236)
T KOG4022|consen 3 AGRVIVYGGKGALGSACVEFFKANNYWVLSIDLSENEQAD-----------SS-ILVDGNKSWTEQEQSVLEQVGSSLQG 70 (236)
T ss_pred CceEEEEcCcchHhHHHHHHHHhcCeEEEEEeeccccccc-----------ce-EEecCCcchhHHHHHHHHHHHHhhcc
Confidence 4689999999999999999999999999988876532111 01 122222211111 11122
Q ss_pred cCCcEeEEecccCCCCCCC------ccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCC
Q 023515 80 DGCDGVCHTASPFYHDAKD------PQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (281)
Q Consensus 80 ~~~d~Vih~a~~~~~~~~~------~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~ 153 (281)
+++|.||..||-...-..+ +.+.+.+-.+....--.+.+..+.+..-++-+.....-.+.. |
T Consensus 71 ekvDav~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~GGLL~LtGAkaAl~gT-P----------- 138 (236)
T KOG4022|consen 71 EKVDAVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPGGLLQLTGAKAALGGT-P----------- 138 (236)
T ss_pred cccceEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCCceeeecccccccCCC-C-----------
Confidence 2789999998743221111 122333333333333334444444545566655543332111 0
Q ss_pred CCChhhhccCCchhhhhHHHHHHHHHHHHHh-cCCc----EEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCC-CCC
Q 023515 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKE-KSID----LVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP-NVT 227 (281)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-~g~~----~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 227 (281)
....|+.+|.+..++.++++.+ .|++ .+.|-|-...+|....- .+ ...
T Consensus 139 ---------gMIGYGMAKaAVHqLt~SLaak~SGlP~gsaa~~ilPVTLDTPMNRKw-----------------MP~ADf 192 (236)
T KOG4022|consen 139 ---------GMIGYGMAKAAVHQLTSSLAAKDSGLPDGSAALTILPVTLDTPMNRKW-----------------MPNADF 192 (236)
T ss_pred ---------cccchhHHHHHHHHHHHHhcccccCCCCCceeEEEeeeeccCcccccc-----------------CCCCcc
Confidence 1234999999999999998765 3554 55566666666652211 11 123
Q ss_pred ccceeHHHHHHHHHHhhc
Q 023515 228 FGWVNVKDVANAHIQAFE 245 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~ 245 (281)
-.|....-+++.++....
T Consensus 193 ssWTPL~fi~e~flkWtt 210 (236)
T KOG4022|consen 193 SSWTPLSFISEHFLKWTT 210 (236)
T ss_pred cCcccHHHHHHHHHHHhc
Confidence 347777888887776664
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.6e-05 Score=63.49 Aligned_cols=115 Identities=16% Similarity=0.039 Sum_probs=78.8
Q ss_pred EEEeCCchHHHHHHHHHHHHCC----CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEE
Q 023515 12 VCVTGASGYIASWLVKLLLSRG----YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (281)
Q Consensus 12 ilItGatG~iG~~l~~~L~~~g----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 87 (281)
|.|+||+|.+|..++..|+..| .+++++++++++........+... ... ....++-..++.+.++++|+||.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~---~~~-~~~~i~~~~d~~~~~~~aDiVv~ 76 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAV---EPL-ADIKVSITDDPYEAFKDADVVII 76 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhh---hhc-cCcEEEECCchHHHhCCCCEEEE
Confidence 5799999999999999999988 799999998766544333322111 000 11222223445677889999999
Q ss_pred ecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEec
Q 023515 88 TASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131 (281)
Q Consensus 88 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S 131 (281)
.++......... ......|+.-.+.+.+...+..+...++.+|
T Consensus 77 t~~~~~~~g~~r-~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t 119 (263)
T cd00650 77 TAGVGRKPGMGR-LDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS 119 (263)
T ss_pred CCCCCCCcCCCH-HHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 998755443333 3677889999999999999874444555554
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.02 E-value=9.1e-05 Score=63.25 Aligned_cols=171 Identities=13% Similarity=0.096 Sum_probs=98.6
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCC--C-----EEEEEEcCCC--CcchhhhhhhccCCCCcEE-EEEcCCCCcCcHHHH
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRG--Y-----TVKASVRDPN--DPKKTRHLLALDGASERLQ-LFKANLLEEGSFDSI 78 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g--~-----~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~-~~~~D~~~~~~~~~~ 78 (281)
..||.|+|++|++|++++..|+..| . +++++++.+. +......... +.. ....+..-.....+.
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~------~~~~~~~~~~~i~~~~~~~ 76 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELE------DCAFPLLAGVVATTDPEEA 76 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHh------hccccccCCcEEecChHHH
Confidence 3489999999999999999999887 3 7999988542 2222111111 010 000111111233456
Q ss_pred hcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCC-ccEEEEeccceeeecCCCCCCCCeeeecCC-CCC
Q 023515 79 VDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAVLNTGKPRTPDVVVDETW-FSD 156 (281)
Q Consensus 79 ~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~-~~~ 156 (281)
++++|+||..||......+ ...+.++.|..-.+.+...+.++.. ...++.+|-. + +.. .....+.. -..
T Consensus 77 ~~daDvVVitAG~~~k~g~-tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNP-v------Dv~-t~v~~k~s~g~p 147 (323)
T TIGR01759 77 FKDVDAALLVGAFPRKPGM-ERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNP-A------NTN-ALIASKNAPDIP 147 (323)
T ss_pred hCCCCEEEEeCCCCCCCCC-cHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCc-H------HHH-HHHHHHHcCCCC
Confidence 7899999999997544333 3448899999999999999999833 3344444421 1 000 00000111 000
Q ss_pred hhhhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCC
Q 023515 157 PEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGP 200 (281)
Q Consensus 157 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~ 200 (281)
+ ....|.+....-++-..+++..+++...++-..|+|.
T Consensus 148 ~------~rViG~t~LDs~R~r~~la~~l~v~~~~V~~~~V~Ge 185 (323)
T TIGR01759 148 P------KNFSAMTRLDHNRAKYQLAAKAGVPVSDVKNVIIWGN 185 (323)
T ss_pred H------HHEEEeeHHHHHHHHHHHHHHhCcChHHeEEeEEEec
Confidence 0 1123445555556666666777887776766666665
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00011 Score=62.87 Aligned_cols=171 Identities=13% Similarity=0.027 Sum_probs=98.1
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCC--C-----EEEEEEcCCCC--cchhhhhhhcc--CCCCcEEEEEcCCCCcCcHHH
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRG--Y-----TVKASVRDPND--PKKTRHLLALD--GASERLQLFKANLLEEGSFDS 77 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g--~-----~V~~~~r~~~~--~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~ 77 (281)
++||.|+|++|.+|+.++..|+..+ . +++++++.+.. ........... ....++. ++ ....+
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~-----i~--~~~y~ 76 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVV-----IT--DDPNV 76 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcE-----Ee--cChHH
Confidence 5689999999999999999998876 3 78999885432 21111111000 0001121 11 12345
Q ss_pred HhcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCC-ccEEEEeccceeeecCCCCCCCCeeeecCCCCC
Q 023515 78 IVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSD 156 (281)
Q Consensus 78 ~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~ 156 (281)
.++++|+||-+||......+ ...+.++.|..-.+.+.+...++.+ ...+|.+|...-.. .....+..+-.
T Consensus 77 ~~~daDiVVitaG~~~k~g~-tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~--------t~v~~k~s~g~ 147 (326)
T PRK05442 77 AFKDADVALLVGARPRGPGM-ERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTN--------ALIAMKNAPDL 147 (326)
T ss_pred HhCCCCEEEEeCCCCCCCCC-cHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHH--------HHHHHHHcCCC
Confidence 67799999999997554333 3448899999999999999999633 34455555311000 00000000000
Q ss_pred hhhhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCC
Q 023515 157 PEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGP 200 (281)
Q Consensus 157 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~ 200 (281)
| .....|.+-...-++-..+++..+++...++...|+|.
T Consensus 148 p-----~~rViG~t~LDs~R~r~~la~~l~v~~~~V~~~vV~Ge 186 (326)
T PRK05442 148 P-----AENFTAMTRLDHNRALSQLAAKAGVPVADIKKMTVWGN 186 (326)
T ss_pred C-----HHHEEeeeHHHHHHHHHHHHHHhCcChHHeEEeEEEEC
Confidence 0 01123444455556666666777877666665556664
|
|
| >COG4982 3-oxoacyl-[acyl-carrier protein] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00014 Score=65.48 Aligned_cols=205 Identities=21% Similarity=0.151 Sum_probs=125.5
Q ss_pred cCCCeEEEeCC-chHHHHHHHHHHHHCCCEEEEEEcCCC--CcchhhhhhhccCC-CCcEEEEEcCCCCcCcHHHHhc--
Q 023515 7 AAGKVVCVTGA-SGYIASWLVKLLLSRGYTVKASVRDPN--DPKKTRHLLALDGA-SERLQLFKANLLEEGSFDSIVD-- 80 (281)
Q Consensus 7 ~~~~~ilItGa-tG~iG~~l~~~L~~~g~~V~~~~r~~~--~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~-- 80 (281)
+..+.++|||| -|-||.+++..|++-|.+|+++..+-+ ..++...+...... ....-++..+..+..+++++++
T Consensus 394 y~d~valVTGA~~gSIaa~Vv~~LL~gGAtVI~TTS~~s~~r~efyr~LYa~~a~~ga~LwvVpaN~~SysDVdAlIewI 473 (866)
T COG4982 394 YGDKVALVTGASKGSIAAAVVARLLAGGATVIATTSRLSEERTEFYRSLYARHARYGAALWVVPANMGSYSDVDALIEWI 473 (866)
T ss_pred cccceEEEecCCCcchHHHHHHHHHhCCcEEEEEcccccHHHHHHHHHHHHhhCCCCceEEEEeccccchhhHHHHHHHh
Confidence 35678999998 589999999999999999998765443 34444444433322 2345667788888888888775
Q ss_pred -------------------CCcEeEEecccC-CC-CCCC--ccchhhhhHHHHHHHHHHHhhhCCCcc-------EEEEe
Q 023515 81 -------------------GCDGVCHTASPF-YH-DAKD--PQVELLDPAVKGTLNVLNSCAKFPSIK-------RVVLT 130 (281)
Q Consensus 81 -------------------~~d~Vih~a~~~-~~-~~~~--~~~~~~~~n~~~~~~l~~~~~~~~~~~-------~~v~~ 130 (281)
.+|.+|-.|++. .. .... .-+...++-+....+++-.+++. +.. ++|.-
T Consensus 474 g~eq~~t~g~~s~~~k~a~~ptll~PFAAp~v~G~l~~agsraE~~~rilLw~V~Rliggl~~~-~s~r~v~~R~hVVLP 552 (866)
T COG4982 474 GDEQTETVGPQSIHIKLAWTPTLLFPFAAPRVSGELADAGSRAEFAMRILLWNVLRLIGGLKKQ-GSSRGVDTRLHVVLP 552 (866)
T ss_pred ccccccccCCcceecccccCcceeeecccCCccCccccCCchHHHHHHHHHHHHHHHHHHhhhh-ccccCcccceEEEec
Confidence 246777777751 11 1111 12345566677888888887775 221 34444
Q ss_pred ccce-eeecCCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhcC----CcEEEEcCCcccCCCCCCC
Q 023515 131 SSMA-AVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKS----IDLVTINPAMVIGPLLQPT 205 (281)
Q Consensus 131 SS~~-~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g----~~~~~irp~~v~g~~~~~~ 205 (281)
.|-. +.+|. .-.|+.+|.+.|.++..|..+.+ +.++-.+.|.+-|.+....
T Consensus 553 gSPNrG~FGg------------------------DGaYgEsK~aldav~~RW~sEs~Wa~~vsl~~A~IGWtrGTGLMg~ 608 (866)
T COG4982 553 GSPNRGMFGG------------------------DGAYGESKLALDAVVNRWHSESSWAARVSLAHALIGWTRGTGLMGH 608 (866)
T ss_pred CCCCCCccCC------------------------CcchhhHHHHHHHHHHHhhccchhhHHHHHhhhheeeeccccccCC
Confidence 4421 11111 12399999999999998877653 3455666777777654433
Q ss_pred CCccHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcC
Q 023515 206 LNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEV 246 (281)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~ 246 (281)
.+.+...+.++ | ..--..+++|..++.++..
T Consensus 609 Ndiiv~aiEk~--G--------V~tyS~~EmA~~LLgL~sa 639 (866)
T COG4982 609 NDIIVAAIEKA--G--------VRTYSTDEMAFNLLGLASA 639 (866)
T ss_pred cchhHHHHHHh--C--------ceecCHHHHHHHHHhhccH
Confidence 22222222222 1 1122466777777766653
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=8e-05 Score=63.73 Aligned_cols=119 Identities=20% Similarity=0.130 Sum_probs=77.0
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+.+||.|+|| |.+|+.++..|+..| .++++++++++................+. ...+....+++ .++++|+||
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~---~~~i~~~~d~~-~l~~ADiVV 78 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGS---NINILGTNNYE-DIKDSDVVV 78 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCC---CeEEEeCCCHH-HhCCCCEEE
Confidence 4679999997 999999999999888 78999998776543211101110000000 01122223455 668999999
Q ss_pred EecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
.+++....... ...+.+..|..-.+.+.+...++.+...+|++|-
T Consensus 79 itag~~~~~g~-~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsN 123 (319)
T PTZ00117 79 ITAGVQRKEEM-TREDLLTINGKIMKSVAESVKKYCPNAFVICVTN 123 (319)
T ss_pred ECCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 99986443322 2347888899888899998888744444666654
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.99 E-value=6.9e-05 Score=63.92 Aligned_cols=118 Identities=19% Similarity=0.187 Sum_probs=74.5
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 87 (281)
|+||.|.|+ |.+|..++..|+..|. +|++++++++............. ........++...+.+ .++++|+||.
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~---~~~~~~~~i~~~~d~~-~~~~aDiVii 76 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAA---PVEGFDTKITGTNDYE-DIAGSDVVVI 76 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhh---hhcCCCcEEEeCCCHH-HHCCCCEEEE
Confidence 468999998 9999999999998875 99999997654422111110000 0000011122122343 4689999999
Q ss_pred ecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 88 TASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 88 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
+++....... ...+.+..|+.-...+++...+......+|.++-
T Consensus 77 ~~~~p~~~~~-~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tN 120 (307)
T PRK06223 77 TAGVPRKPGM-SRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTN 120 (307)
T ss_pred CCCCCCCcCC-CHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 9886543322 2236667899999999998888744345666653
|
|
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.98 E-value=5.5e-06 Score=68.88 Aligned_cols=80 Identities=16% Similarity=0.197 Sum_probs=62.1
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEe
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~ 88 (281)
-..++|-||+||.|.-++++|.++|.+-.+-.|+..+...+...+ +-++-...+-+++.+++.+.+.++|+||
T Consensus 6 e~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~kl~~l~~~L-------G~~~~~~p~~~p~~~~~~~~~~~VVlnc 78 (382)
T COG3268 6 EYDIIIYGATGYAGGLVAEYLAREGLTAALAGRSSAKLDALRASL-------GPEAAVFPLGVPAALEAMASRTQVVLNC 78 (382)
T ss_pred ceeEEEEccccchhHHHHHHHHHcCCchhhccCCHHHHHHHHHhc-------CccccccCCCCHHHHHHHHhcceEEEec
Confidence 457999999999999999999999998888888887766655543 1222223444478899999999999999
Q ss_pred cccCCCC
Q 023515 89 ASPFYHD 95 (281)
Q Consensus 89 a~~~~~~ 95 (281)
+|++...
T Consensus 79 vGPyt~~ 85 (382)
T COG3268 79 VGPYTRY 85 (382)
T ss_pred ccccccc
Confidence 9986543
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00012 Score=63.10 Aligned_cols=108 Identities=15% Similarity=0.179 Sum_probs=70.2
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchh---------------------hhhhhccCCCCcEEE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKT---------------------RHLLALDGASERLQL 64 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~---------------------~~~~~~~~~~~~~~~ 64 (281)
++.++|+|.|+ |.+|+++++.|+..|. +++++|++.-+...+ .+..+......+++.
T Consensus 22 L~~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~ 100 (338)
T PRK12475 22 IREKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVP 100 (338)
T ss_pred hcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEE
Confidence 46789999996 7799999999999996 888898875221111 111111111245677
Q ss_pred EEcCCCCcCcHHHHhcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccce
Q 023515 65 FKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMA 134 (281)
Q Consensus 65 ~~~D~~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~ 134 (281)
+..|++ .+.+++++++.|+||.+. ++ ...-..+-++|.+. ++ .+|+.+..+
T Consensus 101 ~~~~~~-~~~~~~~~~~~DlVid~~--------D~--------~~~r~~in~~~~~~-~i-p~i~~~~~g 151 (338)
T PRK12475 101 VVTDVT-VEELEELVKEVDLIIDAT--------DN--------FDTRLLINDLSQKY-NI-PWIYGGCVG 151 (338)
T ss_pred EeccCC-HHHHHHHhcCCCEEEEcC--------CC--------HHHHHHHHHHHHHc-CC-CEEEEEecc
Confidence 777875 356788889999999774 11 12223455677776 55 477766543
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00013 Score=62.79 Aligned_cols=110 Identities=17% Similarity=0.246 Sum_probs=72.1
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchh---------------------hhhhhccCCCCcEE
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKT---------------------RHLLALDGASERLQ 63 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~---------------------~~~~~~~~~~~~~~ 63 (281)
.++.++|+|.|+ |++|++++..|...|. ++++++++.-+...+ .+..+.....-+++
T Consensus 21 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~ 99 (339)
T PRK07688 21 KLREKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVE 99 (339)
T ss_pred HhcCCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEE
Confidence 346789999996 9999999999999996 899999864221111 11111011123566
Q ss_pred EEEcCCCCcCcHHHHhcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecccee
Q 023515 64 LFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAA 135 (281)
Q Consensus 64 ~~~~D~~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~ 135 (281)
.+..+++. +.+.+++++.|+||.+. + |...-..+.++|.+. ++ .+|+.++.+.
T Consensus 100 ~~~~~~~~-~~~~~~~~~~DlVid~~--------D--------n~~~r~~ln~~~~~~-~i-P~i~~~~~g~ 152 (339)
T PRK07688 100 AIVQDVTA-EELEELVTGVDLIIDAT--------D--------NFETRFIVNDAAQKY-GI-PWIYGACVGS 152 (339)
T ss_pred EEeccCCH-HHHHHHHcCCCEEEEcC--------C--------CHHHHHHHHHHHHHh-CC-CEEEEeeeee
Confidence 67777753 55677888999999874 1 223334567788886 54 5888776543
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00011 Score=62.45 Aligned_cols=116 Identities=13% Similarity=0.119 Sum_probs=76.3
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCCcchhhhhhhccC-CCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDG-ASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
.+||.|+|+ |.||+.++..|+..| .++++++++++............. ........ ...+.++ ++++|+|
T Consensus 3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~-----~~~dy~~-~~~adiv 75 (312)
T cd05293 3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIE-----ADKDYSV-TANSKVV 75 (312)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEE-----ECCCHHH-hCCCCEE
Confidence 458999996 999999999999887 579999987754433222111110 00111111 1123343 6899999
Q ss_pred EEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
|-+||....... ...+.++.|..-.+.+.+...++.....++.+|-
T Consensus 76 vitaG~~~k~g~-~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN 121 (312)
T cd05293 76 IVTAGARQNEGE-SRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSN 121 (312)
T ss_pred EECCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccC
Confidence 999987554332 3348889999999999999999844445665553
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00036 Score=60.29 Aligned_cols=114 Identities=17% Similarity=0.201 Sum_probs=75.7
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCCcchhhhhhhcc-CCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALD-GASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+||.|+|+ |.||+.++..|+..+ .++.+++.+++............ ...... .+....+.+ .++++|+||
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~-----~i~~~~dy~-~~~daDiVV 110 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRT-----KILASTDYA-VTAGSDLCI 110 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCC-----EEEeCCCHH-HhCCCCEEE
Confidence 69999996 999999999999887 47999998775543322211111 000111 121111233 378999999
Q ss_pred EecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEec
Q 023515 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131 (281)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S 131 (281)
-+||......+. ..+.+..|+.-.+.+.+...++.....+|.+|
T Consensus 111 itAG~~~k~g~t-R~dll~~N~~I~~~i~~~I~~~~p~~ivivvt 154 (350)
T PLN02602 111 VTAGARQIPGES-RLNLLQRNVALFRKIIPELAKYSPDTILLIVS 154 (350)
T ss_pred ECCCCCCCcCCC-HHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 999975543333 34888899999999999999874444555555
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0001 Score=53.73 Aligned_cols=97 Identities=20% Similarity=0.241 Sum_probs=55.7
Q ss_pred eEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCC-CcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEe
Q 023515 11 VVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPN-DPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~ 88 (281)
||.|.||||++|+.+++.|.++. ++++.+..+.. ....+...........+..+ .+ .+ ...++++|+||.+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~-~~----~~~~~~~Dvvf~a 73 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSV--ED-AD----PEELSDVDVVFLA 73 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBE--EE-TS----GHHHTTESEEEE-
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeE--ee-cc----hhHhhcCCEEEec
Confidence 68999999999999999999975 57666555444 43343333221110011222 11 12 2234789999988
Q ss_pred cccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccc
Q 023515 89 ASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (281)
Q Consensus 89 a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (281)
.+- .....+...+.+. ++ ++|=.|+.
T Consensus 74 ~~~-----------------~~~~~~~~~~~~~-g~-~ViD~s~~ 99 (121)
T PF01118_consen 74 LPH-----------------GASKELAPKLLKA-GI-KVIDLSGD 99 (121)
T ss_dssp SCH-----------------HHHHHHHHHHHHT-TS-EEEESSST
T ss_pred Cch-----------------hHHHHHHHHHhhC-Cc-EEEeCCHH
Confidence 631 1234455556665 55 57767664
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00014 Score=53.33 Aligned_cols=96 Identities=18% Similarity=0.209 Sum_probs=70.2
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 87 (281)
+++++++.|. | -|.+++..|.+.|++|++++.++...+...+ ..+.++.+|+.+++ .++.+++|.|+-
T Consensus 16 ~~~kileIG~-G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~--------~~~~~v~dDlf~p~--~~~y~~a~liys 83 (134)
T PRK04148 16 KNKKIVELGI-G-FYFKVAKKLKESGFDVIVIDINEKAVEKAKK--------LGLNAFVDDLFNPN--LEIYKNAKLIYS 83 (134)
T ss_pred cCCEEEEEEe-c-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHH--------hCCeEEECcCCCCC--HHHHhcCCEEEE
Confidence 4578999995 6 8999999999999999999998864333222 24789999999877 556778999985
Q ss_pred ecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 88 TASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 88 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
.= +..++ ...+++.|++. ++.-+|..-|
T Consensus 84 ir---------pp~el-------~~~~~~la~~~-~~~~~i~~l~ 111 (134)
T PRK04148 84 IR---------PPRDL-------QPFILELAKKI-NVPLIIKPLS 111 (134)
T ss_pred eC---------CCHHH-------HHHHHHHHHHc-CCCEEEEcCC
Confidence 42 11122 25678888887 7766665544
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=97.81 E-value=4.7e-05 Score=66.47 Aligned_cols=101 Identities=17% Similarity=0.176 Sum_probs=61.8
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHC-CCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHH-HhcCCcEe
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSR-GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDS-IVDGCDGV 85 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~-~~~~~d~V 85 (281)
++++|.|.||||++|..+++.|.++ +++|+.+.++......+... ......+|..+.++++. .++++|+|
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~--------~~~l~~~~~~~~~~~~~~~~~~~DvV 108 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSV--------FPHLITQDLPNLVAVKDADFSDVDAV 108 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhh--------CccccCccccceecCCHHHhcCCCEE
Confidence 4668999999999999999999998 57999998865433222211 11122234433333332 24789998
Q ss_pred EEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceee
Q 023515 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAV 136 (281)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~ 136 (281)
|-+.+- .....++..+ +. + .++|-+|+..-+
T Consensus 109 f~Alp~-----------------~~s~~i~~~~-~~-g-~~VIDlSs~fRl 139 (381)
T PLN02968 109 FCCLPH-----------------GTTQEIIKAL-PK-D-LKIVDLSADFRL 139 (381)
T ss_pred EEcCCH-----------------HHHHHHHHHH-hC-C-CEEEEcCchhcc
Confidence 876531 1334455554 22 3 478888886543
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00027 Score=59.48 Aligned_cols=115 Identities=21% Similarity=0.168 Sum_probs=76.0
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCCcchhhhhhhccC-CCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDG-ASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+||.|+|+ |+||+.++-.|+.++ .++.++++..+..+-......... ....-..+.+| .+ -+.++++|+|+
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~-~~----y~~~~~aDiVv 74 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGD-GD----YEDLKGADIVV 74 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecC-CC----hhhhcCCCEEE
Confidence 47999999 999999999998776 489999998544333211111100 00011222232 11 34567899999
Q ss_pred EecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
-.||.+....+.. .+.++.|..-...+.+...+. ...-++.+-|
T Consensus 75 itAG~prKpGmtR-~DLl~~Na~I~~~i~~~i~~~-~~d~ivlVvt 118 (313)
T COG0039 75 ITAGVPRKPGMTR-LDLLEKNAKIVKDIAKAIAKY-APDAIVLVVT 118 (313)
T ss_pred EeCCCCCCCCCCH-HHHHHhhHHHHHHHHHHHHhh-CCCeEEEEec
Confidence 9999866655443 388999999999999999998 3344444443
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0006 Score=57.92 Aligned_cols=113 Identities=14% Similarity=0.133 Sum_probs=74.5
Q ss_pred eEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCCcchhhhhhhc--cCC-CCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 11 VVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLAL--DGA-SERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~--~~~-~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
||.|.|+ |.||..++..|+.++ .++++++...+........+.. ... ..++....+| .+.++++|+|
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~-------y~~~~~aDiv 72 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGD-------YDDCADADII 72 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECC-------HHHhCCCCEE
Confidence 5889998 999999999999887 4799999876554332221111 111 0123333222 3467799999
Q ss_pred EEecccCCCCCCCc-cchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 86 CHTASPFYHDAKDP-QVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 86 ih~a~~~~~~~~~~-~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
|-.||......... ..+.++.|..-.+.+...+.++ ....++.+.|
T Consensus 73 vitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~-~p~~i~ivvs 119 (307)
T cd05290 73 VITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKV-TKEAVIILIT 119 (307)
T ss_pred EECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEec
Confidence 99999754433221 2488899999999999999998 4344444433
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00018 Score=63.68 Aligned_cols=168 Identities=13% Similarity=0.053 Sum_probs=100.9
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHC-------C--CEEEEEEcCCCCcchhhhhhhcc--CCCCcEEEEEcCCCCcCcHHH
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSR-------G--YTVKASVRDPNDPKKTRHLLALD--GASERLQLFKANLLEEGSFDS 77 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~-------g--~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~ 77 (281)
.-||.|+|++|.||.+++..|+.. + .+++.++++.+...-........ ....++.+.. . -.+
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~------~-~ye 172 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGI------D-PYE 172 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEec------C-CHH
Confidence 358999999999999999999988 6 37888998877654433222111 1011221111 1 135
Q ss_pred HhcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhh-CCCccEEEEeccceeee----cCCCCCCCCeeeecC
Q 023515 78 IVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAK-FPSIKRVVLTSSMAAVL----NTGKPRTPDVVVDET 152 (281)
Q Consensus 78 ~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~-~~~~~~~v~~SS~~~~~----~~~~~~~~~~~~~e~ 152 (281)
.++++|+||-.||......+. ..+.++.|+.-.+.+.+...+ ......+|.+|--.-.. ....+..+...+
T Consensus 173 ~~kdaDiVVitAG~prkpG~t-R~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~~k~sg~~~~rVi--- 248 (444)
T PLN00112 173 VFQDAEWALLIGAKPRGPGME-RADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALICLKNAPNIPAKNF--- 248 (444)
T ss_pred HhCcCCEEEECCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHHHHHHcCCCCcceE---
Confidence 677999999999975544333 348899999999999999999 53444555555321000 000000111111
Q ss_pred CCCChhhhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCC
Q 023515 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPL 201 (281)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~ 201 (281)
=..+....-++-..++++.+++...|.-..|+|..
T Consensus 249 --------------GtgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeH 283 (444)
T PLN00112 249 --------------HALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNH 283 (444)
T ss_pred --------------EeeccHHHHHHHHHHHHHhCcCHHHcccceEEecC
Confidence 12223333455555666678877777666777753
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.75 E-value=6.1e-05 Score=64.23 Aligned_cols=80 Identities=23% Similarity=0.199 Sum_probs=49.8
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhh--------hhhccCCC-CcEEEEEcCCCCcCcHHHHh
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRH--------LLALDGAS-ERLQLFKANLLEEGSFDSIV 79 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~--------~~~~~~~~-~~~~~~~~D~~~~~~~~~~~ 79 (281)
+++|.|+| +|.+|..++..|+++|++|++.+|+++..+.... +......+ .........+.-..++.+++
T Consensus 2 ~~~V~VIG-~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~ 80 (308)
T PRK06129 2 MGSVAIIG-AGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAV 80 (308)
T ss_pred CcEEEEEC-ccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhh
Confidence 35799999 7999999999999999999999998754433211 10000000 00000111122223566777
Q ss_pred cCCcEeEEec
Q 023515 80 DGCDGVCHTA 89 (281)
Q Consensus 80 ~~~d~Vih~a 89 (281)
+++|+|+.+.
T Consensus 81 ~~ad~Vi~av 90 (308)
T PRK06129 81 ADADYVQESA 90 (308)
T ss_pred CCCCEEEECC
Confidence 8999999876
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.75 E-value=7.4e-05 Score=72.51 Aligned_cols=76 Identities=20% Similarity=0.148 Sum_probs=59.2
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCC-CE-------------EEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcC
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRG-YT-------------VKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEG 73 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g-~~-------------V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 73 (281)
++++|+|.|+ |+||+..++.|++.+ ++ |++.+++......+.+.. .+++.++.|+.|.+
T Consensus 568 ~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~------~~~~~v~lDv~D~e 640 (1042)
T PLN02819 568 KSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI------ENAEAVQLDVSDSE 640 (1042)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc------CCCceEEeecCCHH
Confidence 4789999996 999999999998764 33 667777665544433221 25778999999999
Q ss_pred cHHHHhcCCcEeEEecc
Q 023515 74 SFDSIVDGCDGVCHTAS 90 (281)
Q Consensus 74 ~~~~~~~~~d~Vih~a~ 90 (281)
++.++++++|+||++..
T Consensus 641 ~L~~~v~~~DaVIsalP 657 (1042)
T PLN02819 641 SLLKYVSQVDVVISLLP 657 (1042)
T ss_pred HHHHhhcCCCEEEECCC
Confidence 99999899999999875
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.74 E-value=5.9e-05 Score=67.93 Aligned_cols=72 Identities=13% Similarity=0.105 Sum_probs=58.0
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHH-hcCCcEeEEe
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI-VDGCDGVCHT 88 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~Vih~ 88 (281)
|+|+|.|+ |.+|+++++.|.+.|++|++++++++..+.+... .++..+.+|.++.+.+.++ ++++|.||-+
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~-------~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~ 72 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR-------LDVRTVVGNGSSPDVLREAGAEDADLLIAV 72 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh-------cCEEEEEeCCCCHHHHHHcCCCcCCEEEEe
Confidence 47999997 9999999999999999999999977654432210 2578889999998888887 7788988876
Q ss_pred c
Q 023515 89 A 89 (281)
Q Consensus 89 a 89 (281)
.
T Consensus 73 ~ 73 (453)
T PRK09496 73 T 73 (453)
T ss_pred c
Confidence 4
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00085 Score=57.20 Aligned_cols=113 Identities=18% Similarity=0.237 Sum_probs=73.3
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCCcch-hhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKK-TRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
|+|.|.|+ |.+|..++..|+.+| .+|.+++++.+.... ...+.............. .+. +.++++|+||
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~------~d~-~~l~~aDiVi 72 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYA------GDY-ADCKGADVVV 72 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEee------CCH-HHhCCCCEEE
Confidence 37999997 999999999999999 689999998764432 111110000001111111 123 3478999999
Q ss_pred EecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEec
Q 023515 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131 (281)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S 131 (281)
.+++....... ...+....|+.-...+.+.+.++.....++.++
T Consensus 73 ita~~~~~~~~-~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t 116 (308)
T cd05292 73 ITAGANQKPGE-TRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT 116 (308)
T ss_pred EccCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 99986544333 334778889999999999998873333444443
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00034 Score=59.44 Aligned_cols=116 Identities=15% Similarity=0.122 Sum_probs=74.0
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhh-hhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTR-HLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 87 (281)
|+|.|.|+ |++|..++..|+.+|+ +|+++++.++...... ++.. .. ........++-..++++ ++++|+||-
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~-~~---~~~~~~~~i~~t~d~~~-~~~aDiVIi 75 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYE-AS---PVGGFDTKVTGTNNYAD-TANSDIVVI 75 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhh-hh---hccCCCcEEEecCCHHH-hCCCCEEEE
Confidence 47999996 9999999999999886 8999998654322111 1110 00 00001112222233444 678999999
Q ss_pred ecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 88 TASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 88 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
+|+....... ...+.++.|+.-...+++...++.....+|.+|-
T Consensus 76 tag~p~~~~~-sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tN 119 (305)
T TIGR01763 76 TAGLPRKPGM-SREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSN 119 (305)
T ss_pred cCCCCCCcCC-CHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 9986544322 2336778899999999999888733445555554
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00043 Score=55.21 Aligned_cols=108 Identities=13% Similarity=0.160 Sum_probs=68.6
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhh-------------------hhhccCCCCcEEEE
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRH-------------------LLALDGASERLQLF 65 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~-------------------~~~~~~~~~~~~~~ 65 (281)
.++.++|+|.| .|.+|+++++.|...|. ++++++++.-+.+.+.+ ..+......+++.+
T Consensus 18 kl~~~~VlviG-~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~ 96 (202)
T TIGR02356 18 RLLNSHVLIIG-AGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTAL 96 (202)
T ss_pred HhcCCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 45678999999 59999999999999995 89999887432222211 11111111344555
Q ss_pred EcCCCCcCcHHHHhcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccc
Q 023515 66 KANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (281)
Q Consensus 66 ~~D~~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (281)
..++.+ +.+.+.+++.|+||.+.. . ...-..+.+.|+++ +. .+|+.++.
T Consensus 97 ~~~i~~-~~~~~~~~~~D~Vi~~~d--------~--------~~~r~~l~~~~~~~-~i-p~i~~~~~ 145 (202)
T TIGR02356 97 KERVTA-ENLELLINNVDLVLDCTD--------N--------FATRYLINDACVAL-GT-PLISAAVV 145 (202)
T ss_pred hhcCCH-HHHHHHHhCCCEEEECCC--------C--------HHHHHHHHHHHHHc-CC-CEEEEEec
Confidence 555533 456778889999997641 1 12334566777776 54 47776653
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00015 Score=62.41 Aligned_cols=69 Identities=20% Similarity=0.257 Sum_probs=45.2
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCC---EEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGY---TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
|++|+|.||||++|++|++.|.+++| ++..+.+.......+. . .+......|+.+ . .++++|+|
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~----~----~g~~i~v~d~~~----~-~~~~vDvV 67 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELS----F----KGKELKVEDLTT----F-DFSGVDIA 67 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeee----e----CCceeEEeeCCH----H-HHcCCCEE
Confidence 45899999999999999999999765 5577777654433321 1 112333345532 1 23578988
Q ss_pred EEecc
Q 023515 86 CHTAS 90 (281)
Q Consensus 86 ih~a~ 90 (281)
|-+++
T Consensus 68 f~A~g 72 (334)
T PRK14874 68 LFSAG 72 (334)
T ss_pred EECCC
Confidence 87764
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00036 Score=50.24 Aligned_cols=69 Identities=20% Similarity=0.319 Sum_probs=53.1
Q ss_pred EEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHH-hcCCcEeEEec
Q 023515 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI-VDGCDGVCHTA 89 (281)
Q Consensus 12 ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~Vih~a 89 (281)
|+|.|. |.+|+.+++.|.+.+.+|++++++++....+.. ..+.++.||.++++.+.++ +++++.||-+.
T Consensus 1 vvI~G~-g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~--------~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 1 VVIIGY-GRIGREIAEQLKEGGIDVVVIDRDPERVEELRE--------EGVEVIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH--------TTSEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred eEEEcC-CHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh--------cccccccccchhhhHHhhcCccccCEEEEcc
Confidence 578885 789999999999977799999998765444332 2478999999999888875 45788888664
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0014 Score=52.15 Aligned_cols=108 Identities=16% Similarity=0.227 Sum_probs=68.7
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhh----------------------hhhccCCCCcEE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRH----------------------LLALDGASERLQ 63 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~----------------------~~~~~~~~~~~~ 63 (281)
++..+|+|.|++| +|.++++.|+..| .++++++.+.-....+.+ +.+.. +..+++
T Consensus 17 L~~s~VlviG~gg-lGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lN-p~v~i~ 94 (198)
T cd01485 17 LRSAKVLIIGAGA-LGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELN-PNVKLS 94 (198)
T ss_pred HhhCcEEEECCCH-HHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHC-CCCEEE
Confidence 4578999999755 9999999999999 578888876432222211 11111 123566
Q ss_pred EEEcCCCC-cCcHHHHhcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccce
Q 023515 64 LFKANLLE-EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMA 134 (281)
Q Consensus 64 ~~~~D~~~-~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~ 134 (281)
.+..++.+ .+...+.+++.|+||.+. + +......+-+.|++. +. .+|+.++.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~dvVi~~~--------d--------~~~~~~~ln~~c~~~-~i-p~i~~~~~G 148 (198)
T cd01485 95 IVEEDSLSNDSNIEEYLQKFTLVIATE--------E--------NYERTAKVNDVCRKH-HI-PFISCATYG 148 (198)
T ss_pred EEecccccchhhHHHHHhCCCEEEECC--------C--------CHHHHHHHHHHHHHc-CC-CEEEEEeec
Confidence 66666642 345566778899998652 1 122334566888887 55 588887743
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00012 Score=55.72 Aligned_cols=74 Identities=19% Similarity=0.164 Sum_probs=50.8
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
.++++|+|+|+ |.+|+.+++.|.+.| ++|++.+|+.++...+.+... ...+..+.. +..++++++|+|
T Consensus 17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~-------~~~~~~~~~---~~~~~~~~~Dvv 85 (155)
T cd01065 17 LKGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFG-------ELGIAIAYL---DLEELLAEADLI 85 (155)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHh-------hcccceeec---chhhccccCCEE
Confidence 45789999997 999999999999996 889999998765444322211 100111222 344457889999
Q ss_pred EEeccc
Q 023515 86 CHTASP 91 (281)
Q Consensus 86 ih~a~~ 91 (281)
|++...
T Consensus 86 i~~~~~ 91 (155)
T cd01065 86 INTTPV 91 (155)
T ss_pred EeCcCC
Confidence 999854
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00087 Score=54.55 Aligned_cols=108 Identities=15% Similarity=0.180 Sum_probs=68.3
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhh-------------------hhccCCCCcEEEE
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHL-------------------LALDGASERLQLF 65 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~-------------------~~~~~~~~~~~~~ 65 (281)
.++.++|+|.| +|.+|+++++.|...|. +++++|.+.-+...+.+. .+...+..+++.+
T Consensus 18 ~L~~~~VlivG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~ 96 (228)
T cd00757 18 KLKNARVLVVG-AGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY 96 (228)
T ss_pred HHhCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 35678999999 59999999999999995 788876654222222111 1111111356666
Q ss_pred EcCCCCcCcHHHHhcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccc
Q 023515 66 KANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (281)
Q Consensus 66 ~~D~~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (281)
..+++ .+.+.++++++|+||.+.. . ...-..+.++|.++ +. .+|+.+..
T Consensus 97 ~~~i~-~~~~~~~~~~~DvVi~~~d--------~--------~~~r~~l~~~~~~~-~i-p~i~~g~~ 145 (228)
T cd00757 97 NERLD-AENAEELIAGYDLVLDCTD--------N--------FATRYLINDACVKL-GK-PLVSGAVL 145 (228)
T ss_pred cceeC-HHHHHHHHhCCCEEEEcCC--------C--------HHHHHHHHHHHHHc-CC-CEEEEEec
Confidence 66663 3556778889999998752 1 12224567778876 54 57776653
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00099 Score=55.25 Aligned_cols=66 Identities=15% Similarity=0.154 Sum_probs=45.9
Q ss_pred CeEEEeCCchHHHHHHHHHHHHC-CCEEEEEEc-CCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSR-GYTVKASVR-DPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~-g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 87 (281)
++|.|+|++|.+|+.+++.+.+. +.+++++.. +++..... -..++...++++++++++|+||.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~---------------~~~~i~~~~dl~~ll~~~DvVid 66 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ---------------GALGVAITDDLEAVLADADVLID 66 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc---------------CCCCccccCCHHHhccCCCEEEE
Confidence 58999999999999999998875 588777554 43322110 11234344667777778999998
Q ss_pred ecc
Q 023515 88 TAS 90 (281)
Q Consensus 88 ~a~ 90 (281)
++.
T Consensus 67 ~t~ 69 (257)
T PRK00048 67 FTT 69 (257)
T ss_pred CCC
Confidence 763
|
|
| >KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00054 Score=55.93 Aligned_cols=115 Identities=17% Similarity=0.085 Sum_probs=75.0
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCCc--chhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDP--KKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~ 84 (281)
+.||.|.||+|+||+.|.-.|.... .+..+.+....+. ..+.+. +-.......+-.+.++++++++|+
T Consensus 28 ~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVaaDlSHI--------~T~s~V~g~~g~~~L~~al~~adv 99 (345)
T KOG1494|consen 28 GLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVAADLSHI--------NTNSSVVGFTGADGLENALKGADV 99 (345)
T ss_pred cceEEEEecCCccCccHHHHHhcCcccceeeeeecccCCccccccccc--------CCCCceeccCChhHHHHHhcCCCE
Confidence 5689999999999999876664332 2344444433221 111110 011112233445689999999999
Q ss_pred eEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 85 VCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 85 Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
||-=||.+....... ++.|++|..-++.|..++.+.++...+.++|-
T Consensus 100 VvIPAGVPRKPGMTR-DDLFn~NAgIv~~l~~aia~~cP~A~i~vIsN 146 (345)
T KOG1494|consen 100 VVIPAGVPRKPGMTR-DDLFNINAGIVKTLAAAIAKCCPNALILVISN 146 (345)
T ss_pred EEecCCCCCCCCCcH-HHhhhcchHHHHHHHHHHHhhCccceeEeecC
Confidence 999999766544333 38999999999999999999855555555553
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00095 Score=53.61 Aligned_cols=111 Identities=19% Similarity=0.219 Sum_probs=68.2
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhh------------------hhhccCCCCcEEEEE
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRH------------------LLALDGASERLQLFK 66 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~------------------~~~~~~~~~~~~~~~ 66 (281)
.++..+|+|.|+ |.+|+++++.|...|. +++++|.+.-+...+.+ ..+......+++.+.
T Consensus 25 ~L~~~~V~ViG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~ 103 (212)
T PRK08644 25 KLKKAKVGIAGA-GGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHN 103 (212)
T ss_pred HHhCCCEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEe
Confidence 356789999995 9999999999999995 68888887322211111 111111123555666
Q ss_pred cCCCCcCcHHHHhcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecccee
Q 023515 67 ANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAA 135 (281)
Q Consensus 67 ~D~~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~ 135 (281)
..+++ +.+.+.++++|+||.+. + |...-..+.+.|.+. ....+|+.+....
T Consensus 104 ~~i~~-~~~~~~~~~~DvVI~a~--------D--------~~~~r~~l~~~~~~~-~~~p~I~~~~~~~ 154 (212)
T PRK08644 104 EKIDE-DNIEELFKDCDIVVEAF--------D--------NAETKAMLVETVLEH-PGKKLVAASGMAG 154 (212)
T ss_pred eecCH-HHHHHHHcCCCEEEECC--------C--------CHHHHHHHHHHHHHh-CCCCEEEeehhhc
Confidence 66654 45667788899999763 1 122334556677765 2345777755433
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00075 Score=50.12 Aligned_cols=105 Identities=17% Similarity=0.245 Sum_probs=69.0
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhh-------------------hhccCCCCcEEEEEcC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHL-------------------LALDGASERLQLFKAN 68 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~D 68 (281)
.++|+|.|+ |.+|+.+++.|...|. +++++|.+.-+.+.+.+. .....+..+++.+..+
T Consensus 2 ~~~v~iiG~-G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 2 NKRVLIIGA-GGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp T-EEEEEST-SHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCEEEEECc-CHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 468999995 9999999999999995 788888864333222221 1111112467777777
Q ss_pred CCCcCcHHHHhcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccc
Q 023515 69 LLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (281)
Q Consensus 69 ~~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (281)
+ +.+.+.+++++.|+||.+.. |...-..+.+.|++. +. .+|+.++.
T Consensus 81 ~-~~~~~~~~~~~~d~vi~~~d----------------~~~~~~~l~~~~~~~-~~-p~i~~~~~ 126 (135)
T PF00899_consen 81 I-DEENIEELLKDYDIVIDCVD----------------SLAARLLLNEICREY-GI-PFIDAGVN 126 (135)
T ss_dssp C-SHHHHHHHHHTSSEEEEESS----------------SHHHHHHHHHHHHHT-T--EEEEEEEE
T ss_pred c-ccccccccccCCCEEEEecC----------------CHHHHHHHHHHHHHc-CC-CEEEEEee
Confidence 7 33567778889999998742 123335677788887 54 57777764
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00028 Score=61.06 Aligned_cols=36 Identities=31% Similarity=0.394 Sum_probs=30.5
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHC-CCEEEEEEcCCC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSR-GYTVKASVRDPN 44 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~ 44 (281)
|++|+|.||||++|+.+++.|.++ +++++.+.++.+
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~ 38 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSS 38 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccc
Confidence 579999999999999999999987 578888776443
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0018 Score=55.03 Aligned_cols=113 Identities=14% Similarity=0.143 Sum_probs=74.9
Q ss_pred EEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCCcchhhhhhhccC-CCCcEEEEEcCCCCcCcHHHHhcCCcEeEEe
Q 023515 12 VCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDG-ASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (281)
Q Consensus 12 ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~ 88 (281)
|.|.|+ |.+|..++..|+..| .++++++++.+............. ......... . .+ .+.++++|+||.+
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~---~--~~-~~~l~~aDiVIit 73 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVR---G--GD-YADAADADIVVIT 73 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEE---C--CC-HHHhCCCCEEEEc
Confidence 468886 889999999999988 789999998765544333221111 001112111 1 12 3467899999999
Q ss_pred cccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 89 ASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 89 a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
|+........ ..+.+..|+.-.+.+.+..+++.+...++.+|.
T Consensus 74 ag~p~~~~~~-R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sN 116 (300)
T cd00300 74 AGAPRKPGET-RLDLINRNAPILRSVITNLKKYGPDAIILVVSN 116 (300)
T ss_pred CCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 9975543333 347888899999999999998844445555553
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00021 Score=61.39 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=23.4
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGY 34 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~ 34 (281)
|++|.|+||||++|+.+++.|.+++|
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~h 29 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDF 29 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCC
Confidence 46899999999999999999997664
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00065 Score=61.22 Aligned_cols=75 Identities=24% Similarity=0.355 Sum_probs=58.0
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHH-hcCCcEeE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI-VDGCDGVC 86 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~Vi 86 (281)
.+++|+|.|+ |.+|+.+++.|.+.|++|++++++++..+.+... ..++.++.||.++++.+.++ ++++|+||
T Consensus 230 ~~~~iiIiG~-G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~------~~~~~~i~gd~~~~~~L~~~~~~~a~~vi 302 (453)
T PRK09496 230 PVKRVMIVGG-GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEE------LPNTLVLHGDGTDQELLEEEGIDEADAFI 302 (453)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH------CCCCeEEECCCCCHHHHHhcCCccCCEEE
Confidence 3688999997 9999999999999999999999887654433221 12567899999998877553 46889988
Q ss_pred Eec
Q 023515 87 HTA 89 (281)
Q Consensus 87 h~a 89 (281)
-+.
T Consensus 303 ~~~ 305 (453)
T PRK09496 303 ALT 305 (453)
T ss_pred ECC
Confidence 543
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00064 Score=59.28 Aligned_cols=115 Identities=15% Similarity=0.083 Sum_probs=72.8
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCC-CE----EEE--E--EcCCCCcchhhhhhhcc--CCCCcEEEEEcCCCCcCcHHH
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRG-YT----VKA--S--VRDPNDPKKTRHLLALD--GASERLQLFKANLLEEGSFDS 77 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g-~~----V~~--~--~r~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~ 77 (281)
.-||.|+|++|.+|++++..|+..+ .. |.+ + +++.+..+......... ....++.+. . . -.+
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~-----~-~-~y~ 116 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIG-----I-D-PYE 116 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEe-----c-C-CHH
Confidence 3589999999999999999999887 22 333 3 55555443322221110 100122111 1 1 135
Q ss_pred HhcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCcc-EEEEec
Q 023515 78 IVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIK-RVVLTS 131 (281)
Q Consensus 78 ~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~v~~S 131 (281)
.++++|+||-.||......+ ...+.++.|+.-.+.+.....++.+.. .+|.+|
T Consensus 117 ~~kdaDIVVitAG~prkpg~-tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs 170 (387)
T TIGR01757 117 VFEDADWALLIGAKPRGPGM-ERADLLDINGQIFADQGKALNAVASKNCKVLVVG 170 (387)
T ss_pred HhCCCCEEEECCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC
Confidence 67799999999997554333 334888999999999999999963233 455555
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00081 Score=57.14 Aligned_cols=115 Identities=17% Similarity=0.161 Sum_probs=70.2
Q ss_pred EEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEecc
Q 023515 12 VCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTAS 90 (281)
Q Consensus 12 ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a~ 90 (281)
|.|.|+ |.+|..++..|+.+|. +|++++++++............. ........++...+.+ .++++|+||.+++
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~---~~~~~~~~I~~t~d~~-~l~dADiVIit~g 75 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAA---PILGSDTKVTGTNDYE-DIAGSDVVVITAG 75 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhh---hhcCCCeEEEEcCCHH-HhCCCCEEEEecC
Confidence 568998 9999999999998875 99999998654322111111100 0000001121112233 4789999999998
Q ss_pred cCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 91 PFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 91 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
....... ...+.+..|+.-.+.+++...+..+...+|.+|-
T Consensus 76 ~p~~~~~-~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sN 116 (300)
T cd01339 76 IPRKPGM-SRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTN 116 (300)
T ss_pred CCCCcCC-CHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 6443322 2225667799988999998888744444555553
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00042 Score=54.59 Aligned_cols=67 Identities=19% Similarity=0.151 Sum_probs=44.9
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEe
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~ 88 (281)
||+|.|.| +|.||..+++.|.+.||+|++-.|+.++........ +. .. + ...+.+++.+.+|+||-.
T Consensus 1 m~~~~i~G-tGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~-l~---~~-------i-~~~~~~dA~~~aDVVvLA 67 (211)
T COG2085 1 MMIIAIIG-TGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAA-LG---PL-------I-TGGSNEDAAALADVVVLA 67 (211)
T ss_pred CcEEEEec-cChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHh-hc---cc-------c-ccCChHHHHhcCCEEEEe
Confidence 34566655 899999999999999999999977766543321111 00 01 1 234567778889999854
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0003 Score=59.12 Aligned_cols=74 Identities=20% Similarity=0.257 Sum_probs=51.7
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
.++++++|+|+ |++|++++..|...| .+|++++|+.++.+.+.+..... ..+.+ +. +....+.+.|+|
T Consensus 121 ~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~---~~~~~---~~----~~~~~~~~~Div 189 (278)
T PRK00258 121 LKGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGAL---GKAEL---DL----ELQEELADFDLI 189 (278)
T ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhc---cceee---cc----cchhccccCCEE
Confidence 45789999996 999999999999999 79999999876665544332110 01111 11 233556789999
Q ss_pred EEeccc
Q 023515 86 CHTASP 91 (281)
Q Consensus 86 ih~a~~ 91 (281)
|++...
T Consensus 190 InaTp~ 195 (278)
T PRK00258 190 INATSA 195 (278)
T ss_pred EECCcC
Confidence 998743
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0022 Score=51.01 Aligned_cols=81 Identities=16% Similarity=0.256 Sum_probs=53.9
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcC---CCCcchh---------------hhhhhccCCCCcEEEEE
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRD---PNDPKKT---------------RHLLALDGASERLQLFK 66 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~---~~~~~~~---------------~~~~~~~~~~~~~~~~~ 66 (281)
.++.++|+|.|+ |.+|+.++..|+..|. +++++|++ .+...+. .+.........+++.+.
T Consensus 18 ~L~~~~V~IvG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~ 96 (200)
T TIGR02354 18 KLEQATVAICGL-GGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD 96 (200)
T ss_pred HHhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence 456789999996 8899999999999997 79999887 3222210 00000000113455666
Q ss_pred cCCCCcCcHHHHhcCCcEeEEe
Q 023515 67 ANLLEEGSFDSIVDGCDGVCHT 88 (281)
Q Consensus 67 ~D~~~~~~~~~~~~~~d~Vih~ 88 (281)
.+++. +.+.++++++|+||-+
T Consensus 97 ~~i~~-~~~~~~~~~~DlVi~a 117 (200)
T TIGR02354 97 EKITE-ENIDKFFKDADIVCEA 117 (200)
T ss_pred eeCCH-hHHHHHhcCCCEEEEC
Confidence 66643 5577778899999976
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00072 Score=52.82 Aligned_cols=68 Identities=24% Similarity=0.241 Sum_probs=48.9
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
.+.+++|.|.| .|.||+++++.|..-|.+|++.+|.......... ..+ ...+++++++++|+|
T Consensus 33 ~l~g~tvgIiG-~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~--------~~~--------~~~~l~ell~~aDiv 95 (178)
T PF02826_consen 33 ELRGKTVGIIG-YGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADE--------FGV--------EYVSLDELLAQADIV 95 (178)
T ss_dssp -STTSEEEEES-TSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHH--------TTE--------EESSHHHHHHH-SEE
T ss_pred ccCCCEEEEEE-EcCCcCeEeeeeecCCceeEEecccCChhhhccc--------ccc--------eeeehhhhcchhhhh
Confidence 45689999999 6999999999999999999999998764331011 011 234678889999999
Q ss_pred EEecc
Q 023515 86 CHTAS 90 (281)
Q Consensus 86 ih~a~ 90 (281)
+.+..
T Consensus 96 ~~~~p 100 (178)
T PF02826_consen 96 SLHLP 100 (178)
T ss_dssp EE-SS
T ss_pred hhhhc
Confidence 88764
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0019 Score=47.26 Aligned_cols=88 Identities=16% Similarity=0.269 Sum_probs=54.0
Q ss_pred CeEEEeCCchHHHHHHHHHHHH-CCCEEEEE-EcCCCCcc--hhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 10 KVVCVTGASGYIASWLVKLLLS-RGYTVKAS-VRDPNDPK--KTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~-~g~~V~~~-~r~~~~~~--~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
++|.|.|++|.+|+.+++.+.+ .++++.+. +|+++... ....+.. .. ...+.-.++++++++.+|+|
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~-------~~--~~~~~v~~~l~~~~~~~DVv 71 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAG-------IG--PLGVPVTDDLEELLEEADVV 71 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCT-------SS--T-SSBEBS-HHHHTTH-SEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhC-------cC--CcccccchhHHHhcccCCEE
Confidence 4799999999999999999999 57886665 55542111 1111100 00 11222236788888889999
Q ss_pred EEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCc
Q 023515 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSI 124 (281)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~ 124 (281)
|... +-.++...++.|.++ ++
T Consensus 72 IDfT-----------------~p~~~~~~~~~~~~~-g~ 92 (124)
T PF01113_consen 72 IDFT-----------------NPDAVYDNLEYALKH-GV 92 (124)
T ss_dssp EEES------------------HHHHHHHHHHHHHH-T-
T ss_pred EEcC-----------------ChHHhHHHHHHHHhC-CC
Confidence 9764 224556678888887 54
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0015 Score=57.42 Aligned_cols=108 Identities=16% Similarity=0.159 Sum_probs=67.4
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCC-------------------CcchhhhhhhccCCCCcEEEE
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPN-------------------DPKKTRHLLALDGASERLQLF 65 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~-------------------~~~~~~~~~~~~~~~~~~~~~ 65 (281)
.++.++|+|.|+ |++|++++..|+..|. ++++++++.- +.+.+.+.........+++.+
T Consensus 132 ~l~~~~VlvvG~-GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~ 210 (376)
T PRK08762 132 RLLEARVLLIGA-GGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAV 210 (376)
T ss_pred HHhcCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEE
Confidence 356788999985 8899999999999995 7888888731 222222111111111344555
Q ss_pred EcCCCCcCcHHHHhcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccc
Q 023515 66 KANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (281)
Q Consensus 66 ~~D~~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (281)
...+.+ +.+.+++++.|+||++.. .. ..-..+-++|.+. ++ .+|+.+..
T Consensus 211 ~~~~~~-~~~~~~~~~~D~Vv~~~d--------~~--------~~r~~ln~~~~~~-~i-p~i~~~~~ 259 (376)
T PRK08762 211 QERVTS-DNVEALLQDVDVVVDGAD--------NF--------PTRYLLNDACVKL-GK-PLVYGAVF 259 (376)
T ss_pred eccCCh-HHHHHHHhCCCEEEECCC--------CH--------HHHHHHHHHHHHc-CC-CEEEEEec
Confidence 555543 456677889999998752 11 1223466778886 54 57777653
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0022 Score=52.58 Aligned_cols=108 Identities=15% Similarity=0.141 Sum_probs=67.6
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhh-------------------hhccCCCCcEEEE
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHL-------------------LALDGASERLQLF 65 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~-------------------~~~~~~~~~~~~~ 65 (281)
.++..+|+|.|+ |++|+.+++.|+..| -+++++|.+.-+...+.+. .+...+..+++.+
T Consensus 21 ~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~ 99 (240)
T TIGR02355 21 ALKASRVLIVGL-GGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPI 99 (240)
T ss_pred HHhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence 356789999995 899999999999999 5788888765433322211 0000111345555
Q ss_pred EcCCCCcCcHHHHhcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccc
Q 023515 66 KANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (281)
Q Consensus 66 ~~D~~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (281)
...++ .+.+.+++++.|+||.+. +. ...-..+-++|.+. ++ .+|+-++.
T Consensus 100 ~~~i~-~~~~~~~~~~~DlVvd~~--------D~--------~~~r~~ln~~~~~~-~i-p~v~~~~~ 148 (240)
T TIGR02355 100 NAKLD-DAELAALIAEHDIVVDCT--------DN--------VEVRNQLNRQCFAA-KV-PLVSGAAI 148 (240)
T ss_pred eccCC-HHHHHHHhhcCCEEEEcC--------CC--------HHHHHHHHHHHHHc-CC-CEEEEEec
Confidence 44443 345677788999999774 11 22334566778776 54 47775543
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0012 Score=57.09 Aligned_cols=100 Identities=19% Similarity=0.152 Sum_probs=58.6
Q ss_pred CeEEEeCCchHHHHHHHHHHHHC-CCEEEEE-EcCCCCcchhhhhhhccCCCCcEEEE-EcCCCCcCcHHHHhcCCcEeE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSR-GYTVKAS-VRDPNDPKKTRHLLALDGASERLQLF-KANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~-g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~d~Vi 86 (281)
++|.|.||||++|..+++.|.++ +++++.+ +++......+.... .++... ..++.+ .+.+++.+++|+||
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~------~~l~~~~~~~~~~-~~~~~~~~~~DvVf 73 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVH------PHLRGLVDLNLEP-IDEEEIAEDADVVF 73 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhC------ccccccCCceeec-CCHHHhhcCCCEEE
Confidence 47999999999999999999987 4788854 54432222222111 011111 111221 12344556899999
Q ss_pred EecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecccee
Q 023515 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAA 135 (281)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~ 135 (281)
-+..- .....++..+.+. + +++|=.|+..-
T Consensus 74 ~alP~-----------------~~s~~~~~~~~~~-G-~~VIDlS~~fR 103 (346)
T TIGR01850 74 LALPH-----------------GVSAELAPELLAA-G-VKVIDLSADFR 103 (346)
T ss_pred ECCCc-----------------hHHHHHHHHHHhC-C-CEEEeCChhhh
Confidence 87531 1234556666555 4 57888888643
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00083 Score=60.42 Aligned_cols=76 Identities=21% Similarity=0.195 Sum_probs=50.7
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchh-hhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-CCcE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKT-RHLLALDGASERLQLFKANLLEEGSFDSIVD-GCDG 84 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-~~d~ 84 (281)
+++++|+|||++| +|.++++.|++.|++|++.+++....... ..+.. .++.+..+.. +. .+++ ++|+
T Consensus 3 ~~~k~v~v~G~g~-~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~-----~g~~~~~~~~--~~---~~~~~~~d~ 71 (447)
T PRK02472 3 YQNKKVLVLGLAK-SGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLE-----EGIKVICGSH--PL---ELLDEDFDL 71 (447)
T ss_pred cCCCEEEEEeeCH-HHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHh-----cCCEEEeCCC--CH---HHhcCcCCE
Confidence 5688999999987 99999999999999999998765432221 11211 1344443322 11 1233 4899
Q ss_pred eEEecccCC
Q 023515 85 VCHTASPFY 93 (281)
Q Consensus 85 Vih~a~~~~ 93 (281)
||.++|...
T Consensus 72 vV~s~gi~~ 80 (447)
T PRK02472 72 MVKNPGIPY 80 (447)
T ss_pred EEECCCCCC
Confidence 999988643
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00045 Score=55.89 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=35.0
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchh
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKT 49 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~ 49 (281)
|+|.|.||+|.+|.+++..|.+.|++|++.+|++++...+
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l 40 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEA 40 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHH
Confidence 4799999999999999999999999999999987665443
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00082 Score=51.77 Aligned_cols=57 Identities=28% Similarity=0.281 Sum_probs=46.6
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
.+.+++|+|.|+++.+|..+++.|.++|.+|+++.|.. +++.+.++++|+|
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~-----------------------------~~l~~~l~~aDiV 91 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT-----------------------------KNLKEHTKQADIV 91 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc-----------------------------hhHHHHHhhCCEE
Confidence 46789999999977889999999999999988888652 2456677788999
Q ss_pred EEeccc
Q 023515 86 CHTASP 91 (281)
Q Consensus 86 ih~a~~ 91 (281)
|.+.+.
T Consensus 92 Isat~~ 97 (168)
T cd01080 92 IVAVGK 97 (168)
T ss_pred EEcCCC
Confidence 987653
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0026 Score=53.10 Aligned_cols=109 Identities=14% Similarity=0.131 Sum_probs=68.5
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhh-------------------hhccCCCCcEEEE
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHL-------------------LALDGASERLQLF 65 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~-------------------~~~~~~~~~~~~~ 65 (281)
.++..+|+|.|+ |++|++++..|+..| -+++++|.+.-+...+.+. ....-...+++.+
T Consensus 24 kL~~s~VlIvG~-GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~ 102 (287)
T PRK08223 24 RLRNSRVAIAGL-GGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAF 102 (287)
T ss_pred HHhcCCEEEECC-CHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEE
Confidence 356789999995 899999999999999 4788888764333222211 0000112346666
Q ss_pred EcCCCCcCcHHHHhcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 66 KANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 66 ~~D~~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
...++ .+.+.+++++.|+||.+. +.. ++..-..+-++|..+ ++ .+|+.|.
T Consensus 103 ~~~l~-~~n~~~ll~~~DlVvD~~--------D~~------~~~~r~~ln~~c~~~-~i-P~V~~~~ 152 (287)
T PRK08223 103 PEGIG-KENADAFLDGVDVYVDGL--------DFF------EFDARRLVFAACQQR-GI-PALTAAP 152 (287)
T ss_pred ecccC-ccCHHHHHhCCCEEEECC--------CCC------cHHHHHHHHHHHHHc-CC-CEEEEec
Confidence 66665 355778888999998543 110 123335566778887 54 4777654
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00022 Score=54.91 Aligned_cols=65 Identities=18% Similarity=0.157 Sum_probs=47.4
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEe
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~ 88 (281)
|++|.+.| .|.+|+.+++.|+++|++|++.+|++++.+.+... .+ .-.++..++++++|+||-+
T Consensus 1 m~~Ig~IG-lG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~--------g~-------~~~~s~~e~~~~~dvvi~~ 64 (163)
T PF03446_consen 1 MMKIGFIG-LGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEA--------GA-------EVADSPAEAAEQADVVILC 64 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHT--------TE-------EEESSHHHHHHHBSEEEE-
T ss_pred CCEEEEEc-hHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHh--------hh-------hhhhhhhhHhhcccceEee
Confidence 56899999 59999999999999999999999987665553332 11 2234567788888999876
Q ss_pred c
Q 023515 89 A 89 (281)
Q Consensus 89 a 89 (281)
.
T Consensus 65 v 65 (163)
T PF03446_consen 65 V 65 (163)
T ss_dssp S
T ss_pred c
Confidence 4
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0023 Score=49.72 Aligned_cols=77 Identities=21% Similarity=0.269 Sum_probs=50.8
Q ss_pred eEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhh------------------hhhhccCCCCcEEEEEcCCCC
Q 023515 11 VVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTR------------------HLLALDGASERLQLFKANLLE 71 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~------------------~~~~~~~~~~~~~~~~~D~~~ 71 (281)
+|+|.|+ |.+|+++++.|+..|. +++++|.+.-..+.+. +..+......+++.+...+..
T Consensus 1 ~VlViG~-GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~ 79 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence 4899995 9999999999999996 6999988752211111 111111112356666666644
Q ss_pred cCcHHHHhcCCcEeEEec
Q 023515 72 EGSFDSIVDGCDGVCHTA 89 (281)
Q Consensus 72 ~~~~~~~~~~~d~Vih~a 89 (281)
+.+.+.+++.|+||.+.
T Consensus 80 -~~~~~~l~~~DlVi~~~ 96 (174)
T cd01487 80 -NNLEGLFGDCDIVVEAF 96 (174)
T ss_pred -hhHHHHhcCCCEEEECC
Confidence 55777888999999773
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00017 Score=56.62 Aligned_cols=80 Identities=16% Similarity=0.107 Sum_probs=44.4
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcE-E----EE-EcCCCCcCcHHHHhcCCc
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERL-Q----LF-KANLLEEGSFDSIVDGCD 83 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~----~~-~~D~~~~~~~~~~~~~~d 83 (281)
|+|.|.| .|++|..++..|++.|++|++++.++.+.+.+.+-...... .+. . .+ .+.++-..+...+++++|
T Consensus 1 M~I~ViG-lGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E-~~l~~ll~~~~~~~~l~~t~~~~~ai~~ad 78 (185)
T PF03721_consen 1 MKIAVIG-LGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYE-PGLDELLKENVSAGRLRATTDIEEAIKDAD 78 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-C-TTHHHHHHHHHHTTSEEEESEHHHHHHH-S
T ss_pred CEEEEEC-CCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccc-cchhhhhccccccccchhhhhhhhhhhccc
Confidence 5799997 79999999999999999999999987654443321110000 000 0 00 122233345667777899
Q ss_pred EeEEeccc
Q 023515 84 GVCHTASP 91 (281)
Q Consensus 84 ~Vih~a~~ 91 (281)
++|-|..-
T Consensus 79 v~~I~VpT 86 (185)
T PF03721_consen 79 VVFICVPT 86 (185)
T ss_dssp EEEE----
T ss_pred eEEEecCC
Confidence 99988764
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0023 Score=56.89 Aligned_cols=39 Identities=21% Similarity=0.150 Sum_probs=34.6
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcch
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKK 48 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~ 48 (281)
+++|.|.| .|++|..++..|+++|++|+++++++.+.+.
T Consensus 3 ~~kI~VIG-lG~~G~~~A~~La~~G~~V~~~D~~~~~v~~ 41 (415)
T PRK11064 3 FETISVIG-LGYIGLPTAAAFASRQKQVIGVDINQHAVDT 41 (415)
T ss_pred ccEEEEEC-cchhhHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 57899998 6999999999999999999999998766554
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00064 Score=56.84 Aligned_cols=73 Identities=19% Similarity=0.169 Sum_probs=49.4
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 87 (281)
++++++|+|+ |.+|++++..|++.|++|++++|+.++.+.+.+..... ..+... +..+ ....++|+||+
T Consensus 116 ~~k~vliiGa-Gg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~---~~~~~~--~~~~-----~~~~~~DivIn 184 (270)
T TIGR00507 116 PNQRVLIIGA-GGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRY---GEIQAF--SMDE-----LPLHRVDLIIN 184 (270)
T ss_pred cCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhc---CceEEe--chhh-----hcccCccEEEE
Confidence 4789999997 89999999999999999999999876555443332111 112221 1111 12346899999
Q ss_pred eccc
Q 023515 88 TASP 91 (281)
Q Consensus 88 ~a~~ 91 (281)
+.+.
T Consensus 185 atp~ 188 (270)
T TIGR00507 185 ATSA 188 (270)
T ss_pred CCCC
Confidence 9854
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0029 Score=52.07 Aligned_cols=106 Identities=18% Similarity=0.153 Sum_probs=67.0
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhh-------------------hhhccCCCCcEEEEE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRH-------------------LLALDGASERLQLFK 66 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~-------------------~~~~~~~~~~~~~~~ 66 (281)
++.++|+|.|+ |.+|+++++.|+..| .++++++.+.-+...+.+ .........+++.+.
T Consensus 30 L~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~ 108 (245)
T PRK05690 30 LKAARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETIN 108 (245)
T ss_pred hcCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEe
Confidence 45789999997 999999999999999 478888775433222211 011011123556666
Q ss_pred cCCCCcCcHHHHhcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 67 ANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 67 ~D~~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
..++ .+.+.+++++.|+||.+. +. ...-..+-++|.++ +. .+|+.++
T Consensus 109 ~~i~-~~~~~~~~~~~DiVi~~~--------D~--------~~~r~~ln~~~~~~-~i-p~v~~~~ 155 (245)
T PRK05690 109 ARLD-DDELAALIAGHDLVLDCT--------DN--------VATRNQLNRACFAA-KK-PLVSGAA 155 (245)
T ss_pred ccCC-HHHHHHHHhcCCEEEecC--------CC--------HHHHHHHHHHHHHh-CC-EEEEeee
Confidence 6664 345667788999999875 11 12224566777776 54 5776544
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00027 Score=54.00 Aligned_cols=77 Identities=18% Similarity=0.195 Sum_probs=50.3
Q ss_pred eEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEec
Q 023515 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a 89 (281)
||.|.|| |..|.+++..|..+|++|++..|+++..+.+...........++.. ...+.-..+++++++++|+||-..
T Consensus 1 KI~ViGa-G~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l-~~~i~~t~dl~~a~~~ad~Iiiav 77 (157)
T PF01210_consen 1 KIAVIGA-GNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKL-PENIKATTDLEEALEDADIIIIAV 77 (157)
T ss_dssp EEEEESS-SHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBE-ETTEEEESSHHHHHTT-SEEEE-S
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCccc-CcccccccCHHHHhCcccEEEecc
Confidence 6899995 9999999999999999999999987555544443222111111111 112222356788999999988653
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00064 Score=57.26 Aligned_cols=69 Identities=22% Similarity=0.193 Sum_probs=50.3
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+.+++++|+|. |.+|+.+++.|...|.+|++.+|++.+...... .+...+ ..+++.+++++.|+||
T Consensus 149 l~gk~v~IiG~-G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~--------~g~~~~-----~~~~l~~~l~~aDiVi 214 (287)
T TIGR02853 149 IHGSNVMVLGF-GRTGMTIARTFSALGARVFVGARSSADLARITE--------MGLIPF-----PLNKLEEKVAEIDIVI 214 (287)
T ss_pred CCCCEEEEEcC-hHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--------CCCeee-----cHHHHHHHhccCCEEE
Confidence 46899999996 889999999999999999999998653222110 011211 2345677888999999
Q ss_pred Eec
Q 023515 87 HTA 89 (281)
Q Consensus 87 h~a 89 (281)
++.
T Consensus 215 nt~ 217 (287)
T TIGR02853 215 NTI 217 (287)
T ss_pred ECC
Confidence 975
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0035 Score=51.09 Aligned_cols=108 Identities=16% Similarity=0.143 Sum_probs=66.6
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhh--------------------hhccCCCCcEEE
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHL--------------------LALDGASERLQL 64 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~--------------------~~~~~~~~~~~~ 64 (281)
.++..+|+|.|+ |++|+++++.|+..| .+++++|.+.-+...+.+. ........+++.
T Consensus 24 ~L~~~~VlIiG~-GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~ 102 (231)
T PRK08328 24 KLKKAKVAVVGV-GGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIET 102 (231)
T ss_pred HHhCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEE
Confidence 346789999995 899999999999999 5788887654332222110 000011234555
Q ss_pred EEcCCCCcCcHHHHhcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccc
Q 023515 65 FKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (281)
Q Consensus 65 ~~~D~~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (281)
+...++ .+.+++++++.|+||.+.- . ...-..+-++|++. +. .+|+.++.
T Consensus 103 ~~~~~~-~~~~~~~l~~~D~Vid~~d--------~--------~~~r~~l~~~~~~~-~i-p~i~g~~~ 152 (231)
T PRK08328 103 FVGRLS-EENIDEVLKGVDVIVDCLD--------N--------FETRYLLDDYAHKK-GI-PLVHGAVE 152 (231)
T ss_pred EeccCC-HHHHHHHHhcCCEEEECCC--------C--------HHHHHHHHHHHHHc-CC-CEEEEeec
Confidence 555553 3456778888999987641 1 12223455677776 54 57776664
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0058 Score=48.50 Aligned_cols=107 Identities=12% Similarity=0.117 Sum_probs=66.6
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhh--------------------hhhccCCCCcEEE
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRH--------------------LLALDGASERLQL 64 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~--------------------~~~~~~~~~~~~~ 64 (281)
.++.++|+|.|+ |.+|.++++.|+..|. +++++|.+.-....+.+ +.+..+ ..+++.
T Consensus 18 ~L~~s~VlIiG~-gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp-~v~i~~ 95 (197)
T cd01492 18 RLRSARILLIGL-KGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNP-RVKVSV 95 (197)
T ss_pred HHHhCcEEEEcC-CHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCC-CCEEEE
Confidence 356789999996 5599999999999994 78888876432222211 111111 134555
Q ss_pred EEcCCCCcCcHHHHhcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccce
Q 023515 65 FKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMA 134 (281)
Q Consensus 65 ~~~D~~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~ 134 (281)
+...+. +...+.+++.|+||.+.. + ...-..+-+.|++. +. .+|+.++.+
T Consensus 96 ~~~~~~--~~~~~~~~~~dvVi~~~~--------~--------~~~~~~ln~~c~~~-~i-p~i~~~~~G 145 (197)
T cd01492 96 DTDDIS--EKPEEFFSQFDVVVATEL--------S--------RAELVKINELCRKL-GV-KFYATGVHG 145 (197)
T ss_pred EecCcc--ccHHHHHhCCCEEEECCC--------C--------HHHHHHHHHHHHHc-CC-CEEEEEecC
Confidence 555554 234566788999986531 1 12334556788887 65 577777743
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0049 Score=46.19 Aligned_cols=104 Identities=16% Similarity=0.206 Sum_probs=65.5
Q ss_pred eEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhh-------------------hhccCCCCcEEEEEcCCC
Q 023515 11 VVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHL-------------------LALDGASERLQLFKANLL 70 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~D~~ 70 (281)
+|+|.|+ |.+|+++++.|...|. ++++++.+.-....+.+. .+...+.-+++.+..++.
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~ 79 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS 79 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecC
Confidence 4899996 9999999999999996 788888763222221111 111111234555555554
Q ss_pred CcCcHHHHhcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccce
Q 023515 71 EEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMA 134 (281)
Q Consensus 71 ~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~ 134 (281)
+. ...+.+++.|+||.+.. |......+.++|++. +. .+|..++..
T Consensus 80 ~~-~~~~~~~~~diVi~~~d----------------~~~~~~~l~~~~~~~-~i-~~i~~~~~g 124 (143)
T cd01483 80 ED-NLDDFLDGVDLVIDAID----------------NIAVRRALNRACKEL-GI-PVIDAGGLG 124 (143)
T ss_pred hh-hHHHHhcCCCEEEECCC----------------CHHHHHHHHHHHHHc-CC-CEEEEcCCC
Confidence 43 23566788999997752 123445677888887 54 577777753
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0029 Score=54.99 Aligned_cols=107 Identities=16% Similarity=0.075 Sum_probs=67.8
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhh-------------------hhccCCCCcEEEE
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHL-------------------LALDGASERLQLF 65 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~-------------------~~~~~~~~~~~~~ 65 (281)
.++..+|+|.|+ |++|+++++.|+..|. ++++++.+.-....+.+. .+...+..+++.+
T Consensus 25 ~L~~~~VlivG~-GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~ 103 (355)
T PRK05597 25 SLFDAKVAVIGA-GGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVS 103 (355)
T ss_pred HHhCCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEE
Confidence 356789999996 9999999999999994 788888764222222111 1111112356666
Q ss_pred EcCCCCcCcHHHHhcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 66 KANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 66 ~~D~~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
...++. +...+++++.|+||.+. + |...-..+-++|.+. ++ .+|+.++
T Consensus 104 ~~~i~~-~~~~~~~~~~DvVvd~~--------d--------~~~~r~~~n~~c~~~-~i-p~v~~~~ 151 (355)
T PRK05597 104 VRRLTW-SNALDELRDADVILDGS--------D--------NFDTRHLASWAAARL-GI-PHVWASI 151 (355)
T ss_pred EeecCH-HHHHHHHhCCCEEEECC--------C--------CHHHHHHHHHHHHHc-CC-CEEEEEE
Confidence 666653 45566788999999875 1 122223456677776 54 4777665
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0056 Score=51.89 Aligned_cols=110 Identities=15% Similarity=0.072 Sum_probs=72.0
Q ss_pred EeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCCcchhhhhhhc--cCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEec
Q 023515 14 VTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLAL--DGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (281)
Q Consensus 14 ItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a 89 (281)
|.| +|.||.+++..|+..+ .++.++++..+........... .....++++. + .+ .+.++++|+||-.|
T Consensus 1 iIG-aG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~-~--~~----~~~~~daDivVita 72 (299)
T TIGR01771 1 IIG-AGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIR-S--GD----YSDCKDADLVVITA 72 (299)
T ss_pred CCC-cCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEe-c--CC----HHHHCCCCEEEECC
Confidence 456 4999999999999887 4799999876544332222111 1111122222 1 11 34677999999999
Q ss_pred ccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 90 SPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 90 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
|........ ..+.++.|+.-.+.+.+.+.++.....++.+|-
T Consensus 73 g~~rk~g~~-R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN 114 (299)
T TIGR01771 73 GAPQKPGET-RLELVGRNVRIMKSIVPEVVKSGFDGIFLVATN 114 (299)
T ss_pred CCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 975543333 348889999999999999998744445555553
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0037 Score=50.79 Aligned_cols=109 Identities=16% Similarity=0.176 Sum_probs=66.7
Q ss_pred hccCCCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhh-------------------hhccCCCCcEEE
Q 023515 5 AAAAGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHL-------------------LALDGASERLQL 64 (281)
Q Consensus 5 ~~~~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~-------------------~~~~~~~~~~~~ 64 (281)
..++..+|+|.| .|.+|+++++.|+..| .+++++|.+.-....+.+. .....+..+++.
T Consensus 7 ~~L~~~~VlVvG-~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~ 85 (231)
T cd00755 7 EKLRNAHVAVVG-LGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDA 85 (231)
T ss_pred HHHhCCCEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEE
Confidence 346688999999 5999999999999999 4888888764322222111 000011234555
Q ss_pred EEcCCCCcCcHHHHhc-CCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccc
Q 023515 65 FKANLLEEGSFDSIVD-GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (281)
Q Consensus 65 ~~~D~~~~~~~~~~~~-~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (281)
+...++ ++.+..++. +.|+||.+. + |+..-..|.++|++. +. .+|...+.
T Consensus 86 ~~~~i~-~~~~~~l~~~~~D~Vvdai--------D--------~~~~k~~L~~~c~~~-~i-p~I~s~g~ 136 (231)
T cd00755 86 VEEFLT-PDNSEDLLGGDPDFVVDAI--------D--------SIRAKVALIAYCRKR-KI-PVISSMGA 136 (231)
T ss_pred eeeecC-HhHHHHHhcCCCCEEEEcC--------C--------CHHHHHHHHHHHHHh-CC-CEEEEeCC
Confidence 555554 244555553 689988764 1 223445678888887 54 46655443
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00059 Score=57.52 Aligned_cols=39 Identities=18% Similarity=0.127 Sum_probs=34.7
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcch
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKK 48 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~ 48 (281)
+++|.|.|+ |.+|+.++..|+..|++|++.+++++..+.
T Consensus 5 ~~~V~ViGa-G~mG~~iA~~~a~~G~~V~l~d~~~~~~~~ 43 (286)
T PRK07819 5 IQRVGVVGA-GQMGAGIAEVCARAGVDVLVFETTEELATA 43 (286)
T ss_pred ccEEEEEcc-cHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence 468999996 999999999999999999999999876544
|
|
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0016 Score=57.73 Aligned_cols=172 Identities=13% Similarity=0.049 Sum_probs=96.0
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHC---C----CEEEEEEcC--CCCcchhhhhhhc-c-CCCCcEEEEEcCCCCcCcHHH
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSR---G----YTVKASVRD--PNDPKKTRHLLAL-D-GASERLQLFKANLLEEGSFDS 77 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~---g----~~V~~~~r~--~~~~~~~~~~~~~-~-~~~~~~~~~~~D~~~~~~~~~ 77 (281)
.-+|+||||+|.||.+|+-.+++- | ..+++++.. .+...-....... . ....++.+. . ...+
T Consensus 123 p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~-~------~~~e 195 (452)
T cd05295 123 PLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVT-T------DLDV 195 (452)
T ss_pred ceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEE-E------CCHH
Confidence 357999999999999999999862 3 235555552 2222211111111 0 101122221 1 2256
Q ss_pred HhcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCC-ccEEEEeccceeeecCCCCCCCCeeeecCCCCC
Q 023515 78 IVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSD 156 (281)
Q Consensus 78 ~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~ 156 (281)
.++++|+||-.||........ ..+.++.|..-.+.+.+...++.. ..+++.+.|-=+- .. ...+....+.-
T Consensus 196 a~~daDvvIitag~prk~G~~-R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD------~~-t~i~~k~apgi 267 (452)
T cd05295 196 AFKDAHVIVLLDDFLIKEGED-LEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLN------LK-TSILIKYAPSI 267 (452)
T ss_pred HhCCCCEEEECCCCCCCcCCC-HHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHH------HH-HHHHHHHcCCC
Confidence 788999999999975544333 348899999999999999998733 1456666641110 00 00000000000
Q ss_pred hhhhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCC
Q 023515 157 PEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGP 200 (281)
Q Consensus 157 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~ 200 (281)
| ..+..|.+....-++...++++.|++...|+-..|+|.
T Consensus 268 P-----~~rVig~gtlds~R~r~~LA~kl~V~~~~V~~~~VwGe 306 (452)
T cd05295 268 P-----RKNIIAVARLQENRAKALLARKLNVNSAGIKDVIVWGN 306 (452)
T ss_pred C-----HHHEEEecchHHHHHHHHHHHHhCcCHHHceeeEEEEc
Confidence 0 11234444455556666677777777666666566654
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00091 Score=57.71 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=26.9
Q ss_pred eEEEeCCchHHHHHHHHHHHHCCCEEE---EEEcCCC
Q 023515 11 VVCVTGASGYIASWLVKLLLSRGYTVK---ASVRDPN 44 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g~~V~---~~~r~~~ 44 (281)
+|+|.||||++|+.|++.|.+++|.+. .+.+...
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~ 37 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRS 37 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEecccc
Confidence 589999999999999999999876544 4445543
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00054 Score=54.54 Aligned_cols=39 Identities=26% Similarity=0.339 Sum_probs=34.1
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND 45 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 45 (281)
.+++|+|+|+|. |.+|+++++.|.+.|++|++.+++.+.
T Consensus 25 ~l~gk~v~I~G~-G~vG~~~A~~L~~~G~~Vvv~D~~~~~ 63 (200)
T cd01075 25 SLEGKTVAVQGL-GKVGYKLAEHLLEEGAKLIVADINEEA 63 (200)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 356899999996 799999999999999999998887543
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.002 Score=55.02 Aligned_cols=80 Identities=24% Similarity=0.169 Sum_probs=51.4
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhh-----ccCCCCcEEEEEcCCCCcCcHHHHhcCCc
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLA-----LDGASERLQLFKANLLEEGSFDSIVDGCD 83 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~~~~~~D~~~~~~~~~~~~~~d 83 (281)
.++|.|.|+ |-+|+.++..|+..|++|++.+++++.......... ..............++-..+++++++++|
T Consensus 7 i~~VaVIGa-G~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aD 85 (321)
T PRK07066 7 IKTFAAIGS-GVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADAD 85 (321)
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCC
Confidence 478999995 999999999999999999999998764433222110 00000000001112222345778889999
Q ss_pred EeEEec
Q 023515 84 GVCHTA 89 (281)
Q Consensus 84 ~Vih~a 89 (281)
+||-++
T Consensus 86 lViEav 91 (321)
T PRK07066 86 FIQESA 91 (321)
T ss_pred EEEECC
Confidence 999876
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0012 Score=58.96 Aligned_cols=66 Identities=18% Similarity=0.350 Sum_probs=47.1
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEec
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a 89 (281)
|+|.|.||+|.+|..+++.|.+.|++|++++|+++........ .++.+ ..+..++++++|+||-+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~-------~gv~~-------~~~~~e~~~~aDvVIlav 66 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKE-------LGVEY-------ANDNIDAAKDADIVIISV 66 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHH-------cCCee-------ccCHHHHhccCCEEEEec
Confidence 4799999999999999999999999999999986543221111 01211 123456677889998765
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0089 Score=53.84 Aligned_cols=124 Identities=16% Similarity=0.132 Sum_probs=76.0
Q ss_pred CCeEE----EeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcE
Q 023515 9 GKVVC----VTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (281)
Q Consensus 9 ~~~il----ItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~ 84 (281)
+..+| |+||+|.+|.++++.|...|.+|+...+...+..... ..++.-+..|.+..+..+++
T Consensus 34 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~--------~~~~~~~~~d~~~~~~~~~l------ 99 (450)
T PRK08261 34 GQPLLDGPVLVGGAGRLAEALAALLAGLGYDVVANNDGGLTWAAGW--------GDRFGALVFDATGITDPADL------ 99 (450)
T ss_pred CCCCCCCceEEccCchhHHHHHHHHhhCCCeeeecCccccccccCc--------CCcccEEEEECCCCCCHHHH------
Confidence 34556 8888999999999999999999998766544211100 01233333444433332221
Q ss_pred eEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhC-CCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccC
Q 023515 85 VCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKF-PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQS 163 (281)
Q Consensus 85 Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 163 (281)
.+....++.+.+. ....+||+++|.....+
T Consensus 100 ------------------------~~~~~~~~~~l~~l~~~griv~i~s~~~~~~------------------------- 130 (450)
T PRK08261 100 ------------------------KALYEFFHPVLRSLAPCGRVVVLGRPPEAAA------------------------- 130 (450)
T ss_pred ------------------------HHHHHHHHHHHHhccCCCEEEEEccccccCC-------------------------
Confidence 1222233333332 13358999998654320
Q ss_pred CchhhhhHHHHHHHHHHHHHhc--CCcEEEEcCC
Q 023515 164 ELWYPLSKTLAEDAAWKFAKEK--SIDLVTINPA 195 (281)
Q Consensus 164 ~~~Y~~sK~~~e~~~~~~~~~~--g~~~~~irp~ 195 (281)
...|+.+|++.+.+++.+++++ ++.+..+.|+
T Consensus 131 ~~~~~~akaal~gl~rsla~E~~~gi~v~~i~~~ 164 (450)
T PRK08261 131 DPAAAAAQRALEGFTRSLGKELRRGATAQLVYVA 164 (450)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhcCCEEEEEecC
Confidence 1239999999999999998875 6777777665
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0049 Score=53.84 Aligned_cols=106 Identities=19% Similarity=0.157 Sum_probs=67.1
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhh-------------------hhccCCCCcEEEEE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHL-------------------LALDGASERLQLFK 66 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~-------------------~~~~~~~~~~~~~~ 66 (281)
++..+|+|.|+ |.+|.++++.|+..| .++++++.+.-+...+.+. ........+++.+.
T Consensus 39 l~~~~VliiG~-GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~ 117 (370)
T PRK05600 39 LHNARVLVIGA-GGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALR 117 (370)
T ss_pred hcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEee
Confidence 45788999995 899999999999999 4899988864222222111 00001123456666
Q ss_pred cCCCCcCcHHHHhcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 67 ANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 67 ~D~~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
..++ .+.+.++++++|+||.+. + |...-..+-++|... ++ .+|+.+.
T Consensus 118 ~~i~-~~~~~~~~~~~DlVid~~--------D--------n~~~r~~in~~~~~~-~i-P~v~~~~ 164 (370)
T PRK05600 118 ERLT-AENAVELLNGVDLVLDGS--------D--------SFATKFLVADAAEIT-GT-PLVWGTV 164 (370)
T ss_pred eecC-HHHHHHHHhCCCEEEECC--------C--------CHHHHHHHHHHHHHc-CC-CEEEEEE
Confidence 6664 345677888999999875 1 223333455677776 54 4666654
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00065 Score=62.86 Aligned_cols=70 Identities=17% Similarity=0.161 Sum_probs=56.2
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHH-hcCCcEeEEe
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI-VDGCDGVCHT 88 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~Vih~ 88 (281)
.+|+|.| .|.+|++++++|.++|++|+++++++++.+.+++ .+...+.||.+|++.++++ ++++|.++-+
T Consensus 418 ~hiiI~G-~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~--------~g~~~i~GD~~~~~~L~~a~i~~a~~viv~ 488 (558)
T PRK10669 418 NHALLVG-YGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE--------RGIRAVLGNAANEEIMQLAHLDCARWLLLT 488 (558)
T ss_pred CCEEEEC-CChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH--------CCCeEEEcCCCCHHHHHhcCccccCEEEEE
Confidence 5689999 5999999999999999999999988765544332 2578999999998877764 4578877654
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0017 Score=55.99 Aligned_cols=116 Identities=16% Similarity=0.091 Sum_probs=68.7
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEE-----EcCCCCcCcHHHHhcCCcE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLF-----KANLLEEGSFDSIVDGCDG 84 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-----~~D~~~~~~~~~~~~~~d~ 84 (281)
|+|.|.| +|++|.....-|.+.||+|++++.++.+.+.++.-.....++.=-+++ .+-++-..+.++++++.|+
T Consensus 1 MkI~viG-tGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv 79 (414)
T COG1004 1 MKITVIG-TGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADV 79 (414)
T ss_pred CceEEEC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCE
Confidence 5799999 799999999999999999999999887665554422111100000001 1112223467788889999
Q ss_pred eEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccc
Q 023515 85 VCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (281)
Q Consensus 85 Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (281)
+|-+.|-++.. +. ..++..+...++...+....+++|.+=|+
T Consensus 80 ~fIavgTP~~~--dg-----~aDl~~V~ava~~i~~~~~~~~vvV~KST 121 (414)
T COG1004 80 VFIAVGTPPDE--DG-----SADLSYVEAVAKDIGEILDGKAVVVIKST 121 (414)
T ss_pred EEEEcCCCCCC--CC-----CccHHHHHHHHHHHHhhcCCCeEEEEcCC
Confidence 99887754432 11 12334444445555544333355555443
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0022 Score=59.87 Aligned_cols=72 Identities=13% Similarity=0.193 Sum_probs=57.9
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHH-hcCCcEeEE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI-VDGCDGVCH 87 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~Vih 87 (281)
.++|+|.| .|.+|+.+++.|.++|+++++++++++..+.+.+ .+...+.||.++++.++++ ++++|.+|-
T Consensus 400 ~~~vII~G-~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~--------~g~~v~~GDat~~~~L~~agi~~A~~vv~ 470 (601)
T PRK03659 400 KPQVIIVG-FGRFGQVIGRLLMANKMRITVLERDISAVNLMRK--------YGYKVYYGDATQLELLRAAGAEKAEAIVI 470 (601)
T ss_pred cCCEEEec-CchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh--------CCCeEEEeeCCCHHHHHhcCCccCCEEEE
Confidence 35799999 5999999999999999999999988765544322 2578899999998888775 568898886
Q ss_pred ec
Q 023515 88 TA 89 (281)
Q Consensus 88 ~a 89 (281)
+-
T Consensus 471 ~~ 472 (601)
T PRK03659 471 TC 472 (601)
T ss_pred Ee
Confidence 53
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0015 Score=55.03 Aligned_cols=75 Identities=19% Similarity=0.176 Sum_probs=52.3
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
..+++|+|.|+ |+.|++++..|...|. +|++++|+.++.+.+.+...... ....+.. .+++.+.++++|+|
T Consensus 125 ~~~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~--~~~~~~~-----~~~~~~~~~~aDiV 196 (284)
T PRK12549 125 ASLERVVQLGA-GGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARF--PAARATA-----GSDLAAALAAADGL 196 (284)
T ss_pred ccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhC--CCeEEEe-----ccchHhhhCCCCEE
Confidence 45689999996 8899999999999996 89999998877766544332111 1122211 13345566789999
Q ss_pred EEec
Q 023515 86 CHTA 89 (281)
Q Consensus 86 ih~a 89 (281)
||+.
T Consensus 197 InaT 200 (284)
T PRK12549 197 VHAT 200 (284)
T ss_pred EECC
Confidence 9984
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0023 Score=53.64 Aligned_cols=55 Identities=22% Similarity=0.263 Sum_probs=44.9
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+++++|+|.|++|.+|+.++..|+++|.+|+++.|+. ..+.+.++++|+||
T Consensus 157 l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t-----------------------------~~L~~~~~~aDIvI 207 (283)
T PRK14192 157 LAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT-----------------------------QNLPELVKQADIIV 207 (283)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc-----------------------------hhHHHHhccCCEEE
Confidence 5789999999999999999999999999888887621 12344457899999
Q ss_pred Eecc
Q 023515 87 HTAS 90 (281)
Q Consensus 87 h~a~ 90 (281)
++.|
T Consensus 208 ~AtG 211 (283)
T PRK14192 208 GAVG 211 (283)
T ss_pred EccC
Confidence 9886
|
|
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0072 Score=49.21 Aligned_cols=104 Identities=14% Similarity=0.165 Sum_probs=66.2
Q ss_pred eEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhhh-------------------hccCCCCcEEEEEcCCC
Q 023515 11 VVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLL-------------------ALDGASERLQLFKANLL 70 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~D~~ 70 (281)
+|+|.| .|++|.++++.|+..|. +++++|.+.-+...+.+.. ......-+++.+..++.
T Consensus 1 kVlvvG-~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~ 79 (234)
T cd01484 1 KVLLVG-AGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG 79 (234)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence 489999 59999999999999994 7888887643322222110 00111235677777775
Q ss_pred CcCcH-HHHhcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccc
Q 023515 71 EEGSF-DSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (281)
Q Consensus 71 ~~~~~-~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (281)
+.... .+.+++.|+||.+. + |+..-..+-+.|... ++ .+|..++.
T Consensus 80 ~~~~~~~~f~~~~DvVi~a~--------D--------n~~aR~~ln~~c~~~-~i-plI~~g~~ 125 (234)
T cd01484 80 PEQDFNDTFFEQFHIIVNAL--------D--------NIIARRYVNGMLIFL-IV-PLIESGTE 125 (234)
T ss_pred hhhhchHHHHhCCCEEEECC--------C--------CHHHHHHHHHHHHHc-CC-CEEEEccc
Confidence 53332 45778899999763 1 234445677777776 54 47776663
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0072 Score=51.33 Aligned_cols=104 Identities=18% Similarity=0.172 Sum_probs=67.4
Q ss_pred eEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhhh-------------------hccCCCCcEEEEEcCCC
Q 023515 11 VVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLL-------------------ALDGASERLQLFKANLL 70 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~D~~ 70 (281)
+|||.|+ |++|.++++.|+..| -+++++|.+.-+...+.+.. +......+++....++.
T Consensus 1 kVlIVGa-GGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~ 79 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIK 79 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence 5899995 999999999999999 47888887653333322210 00011235677777887
Q ss_pred CcCcHHHHhcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccc
Q 023515 71 EEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (281)
Q Consensus 71 ~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (281)
+.....+.+++.|+||.+. + |...-..+-+.|... ++ .+|..++.
T Consensus 80 ~~~~~~~f~~~~DvVv~a~--------D--------n~~ar~~in~~c~~~-~i-p~I~~gt~ 124 (312)
T cd01489 80 DPDFNVEFFKQFDLVFNAL--------D--------NLAARRHVNKMCLAA-DV-PLIESGTT 124 (312)
T ss_pred CccchHHHHhcCCEEEECC--------C--------CHHHHHHHHHHHHHC-CC-CEEEEecC
Confidence 6544557788999998763 1 223345566777776 54 47776654
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00066 Score=57.47 Aligned_cols=69 Identities=22% Similarity=0.203 Sum_probs=50.6
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+.+++++|.|. |.+|+.+++.|...|.+|++++|++.+...... .+.+++ ..+++.+.+++.|+||
T Consensus 150 l~g~kvlViG~-G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~--------~G~~~~-----~~~~l~~~l~~aDiVI 215 (296)
T PRK08306 150 IHGSNVLVLGF-GRTGMTLARTLKALGANVTVGARKSAHLARITE--------MGLSPF-----HLSELAEEVGKIDIIF 215 (296)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH--------cCCeee-----cHHHHHHHhCCCCEEE
Confidence 35889999996 889999999999999999999998653222111 122222 2245677788999999
Q ss_pred Eec
Q 023515 87 HTA 89 (281)
Q Consensus 87 h~a 89 (281)
+++
T Consensus 216 ~t~ 218 (296)
T PRK08306 216 NTI 218 (296)
T ss_pred ECC
Confidence 975
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0019 Score=58.21 Aligned_cols=121 Identities=12% Similarity=-0.005 Sum_probs=66.8
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCCcchhhhhhhccCCCCcEE-E----EEcCCCCcCcHHHHhcC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDGASERLQ-L----FKANLLEEGSFDSIVDG 81 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~----~~~D~~~~~~~~~~~~~ 81 (281)
||+|.|.| +|++|..++-.|++.| ++|++++.++++.+.+..-...... .... + ....++-..++.+++++
T Consensus 1 ~m~I~ViG-~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e-~gl~ell~~~~~~~l~~t~~~~~~i~~ 78 (473)
T PLN02353 1 MVKICCIG-AGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYE-PGLDEVVKQCRGKNLFFSTDVEKHVAE 78 (473)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCC-CCHHHHHHHhhcCCEEEEcCHHHHHhc
Confidence 45799997 6999999999999984 8899999987665554332110000 0000 0 00112222345667788
Q ss_pred CcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccc
Q 023515 82 CDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (281)
Q Consensus 82 ~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (281)
+|++|-|.+-+......+ .....++......++...+..+..++|.+.|+
T Consensus 79 advi~I~V~TP~~~~g~~--~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~ST 128 (473)
T PLN02353 79 ADIVFVSVNTPTKTRGLG--AGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (473)
T ss_pred CCEEEEEeCCCCCCCCCc--CCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCC
Confidence 999998876433211000 01123344444555544444333456665554
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0014 Score=57.28 Aligned_cols=75 Identities=13% Similarity=0.085 Sum_probs=54.4
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 87 (281)
..++|+|.|+ |.+|..+++.|...|.+|++++|++.+.+.+.... . ..+..+..+.+.+.+.++++|+||+
T Consensus 166 ~~~~VlViGa-G~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~---g-----~~v~~~~~~~~~l~~~l~~aDvVI~ 236 (370)
T TIGR00518 166 EPGDVTIIGG-GVVGTNAAKMANGLGATVTILDINIDRLRQLDAEF---G-----GRIHTRYSNAYEIEDAVKRADLLIG 236 (370)
T ss_pred CCceEEEEcC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhc---C-----ceeEeccCCHHHHHHHHccCCEEEE
Confidence 4577999986 89999999999999999999998765433322211 1 1122344556678888889999999
Q ss_pred eccc
Q 023515 88 TASP 91 (281)
Q Consensus 88 ~a~~ 91 (281)
++..
T Consensus 237 a~~~ 240 (370)
T TIGR00518 237 AVLI 240 (370)
T ss_pred cccc
Confidence 8754
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0025 Score=56.99 Aligned_cols=72 Identities=17% Similarity=0.131 Sum_probs=50.4
Q ss_pred cCCCeEEEeCC----------------chHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCC
Q 023515 7 AAGKVVCVTGA----------------SGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLL 70 (281)
Q Consensus 7 ~~~~~ilItGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 70 (281)
+++++||||+| ||-.|.+|++.+..+|.+|+++.-.- ... .+.+++++. +.
T Consensus 254 l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~-~~~----------~p~~v~~i~--V~ 320 (475)
T PRK13982 254 LAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV-DLA----------DPQGVKVIH--VE 320 (475)
T ss_pred cCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc-CCC----------CCCCceEEE--ec
Confidence 67999999975 68999999999999999999986321 110 012455443 33
Q ss_pred CcCcHHHHhc---CCcEeEEeccc
Q 023515 71 EEGSFDSIVD---GCDGVCHTASP 91 (281)
Q Consensus 71 ~~~~~~~~~~---~~d~Vih~a~~ 91 (281)
...++.++++ ..|++|++||+
T Consensus 321 ta~eM~~av~~~~~~Di~I~aAAV 344 (475)
T PRK13982 321 SARQMLAAVEAALPADIAIFAAAV 344 (475)
T ss_pred CHHHHHHHHHhhCCCCEEEEeccc
Confidence 4444444443 47999999996
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0021 Score=58.51 Aligned_cols=80 Identities=19% Similarity=0.133 Sum_probs=50.6
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhh----ccCCCCcEEE-EEcCCCCcCcHHHHhcCCc
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLA----LDGASERLQL-FKANLLEEGSFDSIVDGCD 83 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~-~~~D~~~~~~~~~~~~~~d 83 (281)
.++|.|.| +|.+|+.++..|+..|++|++.+++++..+.+..... .......... ..+.+.-.+++.++++++|
T Consensus 4 i~kIavIG-~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD 82 (495)
T PRK07531 4 IMKAACIG-GGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGAD 82 (495)
T ss_pred cCEEEEEC-cCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCC
Confidence 35799997 6999999999999999999999998766544322110 0000000000 0111222345677888999
Q ss_pred EeEEec
Q 023515 84 GVCHTA 89 (281)
Q Consensus 84 ~Vih~a 89 (281)
+||-+.
T Consensus 83 ~Vieav 88 (495)
T PRK07531 83 WIQESV 88 (495)
T ss_pred EEEEcC
Confidence 999765
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0084 Score=49.76 Aligned_cols=108 Identities=18% Similarity=0.244 Sum_probs=66.0
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhhh-------------------hccCCCCcEEEE
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLL-------------------ALDGASERLQLF 65 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~-------------------~~~~~~~~~~~~ 65 (281)
.++..+|+|.| .|++|+++++.|+..| .++++++.+.-....+.+.. .......+++.+
T Consensus 27 kL~~s~VlVvG-~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i 105 (268)
T PRK15116 27 LFADAHICVVG-IGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVV 105 (268)
T ss_pred HhcCCCEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEE
Confidence 45678999999 5999999999999999 68999887643322222110 000011234444
Q ss_pred EcCCCCcCcHHHHhc-CCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccc
Q 023515 66 KANLLEEGSFDSIVD-GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (281)
Q Consensus 66 ~~D~~~~~~~~~~~~-~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (281)
..-+ +++.+.+++. +.|+||.+.. ++..-..|.+.|.+. +. .+|...+.
T Consensus 106 ~~~i-~~e~~~~ll~~~~D~VIdaiD----------------~~~~k~~L~~~c~~~-~i-p~I~~gGa 155 (268)
T PRK15116 106 DDFI-TPDNVAEYMSAGFSYVIDAID----------------SVRPKAALIAYCRRN-KI-PLVTTGGA 155 (268)
T ss_pred eccc-ChhhHHHHhcCCCCEEEEcCC----------------CHHHHHHHHHHHHHc-CC-CEEEECCc
Confidence 3322 3455666664 6899987642 122335678888887 54 46655543
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0019 Score=54.49 Aligned_cols=80 Identities=16% Similarity=0.071 Sum_probs=50.4
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhh----hccCCCCcEEE------EEcCCCCcCcHHHH
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLL----ALDGASERLQL------FKANLLEEGSFDSI 78 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~~------~~~D~~~~~~~~~~ 78 (281)
.++|.|.|+ |.+|+.++..|+..|++|++.+++++..+...... ........... ....++-..++.++
T Consensus 3 ~~kIaViGa-G~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a 81 (287)
T PRK08293 3 IKNVTVAGA-GVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA 81 (287)
T ss_pred ccEEEEECC-CHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence 468999995 99999999999999999999999876544332211 00000000000 00111112456777
Q ss_pred hcCCcEeEEec
Q 023515 79 VDGCDGVCHTA 89 (281)
Q Consensus 79 ~~~~d~Vih~a 89 (281)
++++|+||-+.
T Consensus 82 ~~~aDlVieav 92 (287)
T PRK08293 82 VKDADLVIEAV 92 (287)
T ss_pred hcCCCEEEEec
Confidence 88999999876
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0029 Score=53.12 Aligned_cols=56 Identities=20% Similarity=0.217 Sum_probs=47.3
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+.+|+|.|.|.+|.+|+.++..|+++|++|++..|... .+.++.+++|+||
T Consensus 157 l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~-----------------------------~l~e~~~~ADIVI 207 (301)
T PRK14194 157 LTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST-----------------------------DAKALCRQADIVV 207 (301)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC-----------------------------CHHHHHhcCCEEE
Confidence 57999999999999999999999999999999865421 3566777889999
Q ss_pred Eeccc
Q 023515 87 HTASP 91 (281)
Q Consensus 87 h~a~~ 91 (281)
-+.+.
T Consensus 208 savg~ 212 (301)
T PRK14194 208 AAVGR 212 (301)
T ss_pred EecCC
Confidence 88764
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0048 Score=58.24 Aligned_cols=106 Identities=17% Similarity=0.225 Sum_probs=71.2
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCC--EEEEEEcCCCCcchhhhh------------------hhccCCCCcEEEEE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHL------------------LALDGASERLQLFK 66 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~------------------~~~~~~~~~~~~~~ 66 (281)
++..+|+|.|+ | +|++++..|+..|. ++++++.+.-+...+.+. ........+++.+.
T Consensus 105 L~~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~ 182 (722)
T PRK07877 105 LGRLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFT 182 (722)
T ss_pred HhcCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEe
Confidence 46789999999 7 99999999999993 888888764333332221 00001123677777
Q ss_pred cCCCCcCcHHHHhcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccc
Q 023515 67 ANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (281)
Q Consensus 67 ~D~~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (281)
..++ .+.++++++++|+||.+. + |+..-..+.++|.+. ++ .+|+-++.
T Consensus 183 ~~i~-~~n~~~~l~~~DlVvD~~--------D--------~~~~R~~ln~~a~~~-~i-P~i~~~~~ 230 (722)
T PRK07877 183 DGLT-EDNVDAFLDGLDVVVEEC--------D--------SLDVKVLLREAARAR-RI-PVLMATSD 230 (722)
T ss_pred ccCC-HHHHHHHhcCCCEEEECC--------C--------CHHHHHHHHHHHHHc-CC-CEEEEcCC
Confidence 7776 567888899999999875 2 233434556777776 54 47776653
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0014 Score=57.98 Aligned_cols=74 Identities=12% Similarity=0.135 Sum_probs=54.4
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcE
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~ 84 (281)
.+.+++|+|.|+ |.+|+.+++.|..+| .+++++.|+..+...+..... .. .....+++...+..+|+
T Consensus 178 ~l~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~------~~-----~~~~~~~l~~~l~~aDi 245 (414)
T PRK13940 178 NISSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFR------NA-----SAHYLSELPQLIKKADI 245 (414)
T ss_pred CccCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhc------CC-----eEecHHHHHHHhccCCE
Confidence 356899999996 999999999999999 579999998766555443210 11 12223456777889999
Q ss_pred eEEeccc
Q 023515 85 VCHTASP 91 (281)
Q Consensus 85 Vih~a~~ 91 (281)
||++.+-
T Consensus 246 VI~aT~a 252 (414)
T PRK13940 246 IIAAVNV 252 (414)
T ss_pred EEECcCC
Confidence 9999764
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0033 Score=52.52 Aligned_cols=56 Identities=21% Similarity=0.247 Sum_probs=47.4
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+.+++|+|+|.++.+|+.++..|..+|.+|+++.++. ..+.+.++++|+||
T Consensus 156 l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t-----------------------------~~l~~~~~~ADIVI 206 (286)
T PRK14175 156 LEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS-----------------------------KDMASYLKDADVIV 206 (286)
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc-----------------------------hhHHHHHhhCCEEE
Confidence 5789999999999999999999999999999887531 23567788899999
Q ss_pred Eeccc
Q 023515 87 HTASP 91 (281)
Q Consensus 87 h~a~~ 91 (281)
..++.
T Consensus 207 sAvg~ 211 (286)
T PRK14175 207 SAVGK 211 (286)
T ss_pred ECCCC
Confidence 88764
|
|
| >PRK08057 cobalt-precorrin-6x reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.012 Score=48.43 Aligned_cols=91 Identities=15% Similarity=0.171 Sum_probs=64.6
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--CCcEeE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVC 86 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~Vi 86 (281)
|++|||.|||+= |+.+++.|.+.|+.|++..-..... . .......+.|-+.+.+.+.++++ +++.||
T Consensus 2 ~~~IlvlgGT~e-gr~la~~L~~~g~~v~~Svat~~g~-~---------~~~~~~v~~G~l~~~~~l~~~l~~~~i~~VI 70 (248)
T PRK08057 2 MPRILLLGGTSE-ARALARALAAAGVDIVLSLAGRTGG-P---------ADLPGPVRVGGFGGAEGLAAYLREEGIDLVI 70 (248)
T ss_pred CceEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCCC-c---------ccCCceEEECCCCCHHHHHHHHHHCCCCEEE
Confidence 567999999875 9999999999999888766554322 1 01356777888878889999887 789999
Q ss_pred EecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCcc
Q 023515 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIK 125 (281)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~ 125 (281)
...-|+. ..-+.++.++|.+. +.+
T Consensus 71 DATHPfA--------------~~is~~a~~ac~~~-~ip 94 (248)
T PRK08057 71 DATHPYA--------------AQISANAAAACRAL-GIP 94 (248)
T ss_pred ECCCccH--------------HHHHHHHHHHHHHh-CCc
Confidence 8653221 12345666777765 444
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0027 Score=54.24 Aligned_cols=80 Identities=19% Similarity=0.199 Sum_probs=49.8
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhh-ccC--CCCcEE-EEEcCCCCcCcHHHHhcCCcE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLA-LDG--ASERLQ-LFKANLLEEGSFDSIVDGCDG 84 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~--~~~~~~-~~~~D~~~~~~~~~~~~~~d~ 84 (281)
.++|.|.|+ |.+|..++..|++.|++|++++++.+..+.+..... ... ...... ...+.+.-..+..++++++|+
T Consensus 4 ~~~I~vIGa-G~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDl 82 (311)
T PRK06130 4 IQNLAIIGA-GTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADL 82 (311)
T ss_pred ccEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCE
Confidence 467999985 999999999999999999999988765544333110 000 000000 000111112345667788999
Q ss_pred eEEec
Q 023515 85 VCHTA 89 (281)
Q Consensus 85 Vih~a 89 (281)
||-+.
T Consensus 83 Vi~av 87 (311)
T PRK06130 83 VIEAV 87 (311)
T ss_pred EEEec
Confidence 99875
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0018 Score=55.58 Aligned_cols=79 Identities=19% Similarity=0.161 Sum_probs=48.7
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEe
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~ 88 (281)
||+|.|.|+ |.+|..++..|++.|++|++++|+++..+.+............... ...+.-..+..++++++|+||-+
T Consensus 1 mmkI~iiG~-G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~vi~~ 78 (325)
T PRK00094 1 MMKIAVLGA-GSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKL-PDNLRATTDLAEALADADLILVA 78 (325)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcC-CCCeEEeCCHHHHHhCCCEEEEe
Confidence 357999995 9999999999999999999999976554443322100000000000 00111223455667789999877
Q ss_pred c
Q 023515 89 A 89 (281)
Q Consensus 89 a 89 (281)
.
T Consensus 79 v 79 (325)
T PRK00094 79 V 79 (325)
T ss_pred C
Confidence 5
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0004 Score=54.30 Aligned_cols=36 Identities=31% Similarity=0.446 Sum_probs=30.5
Q ss_pred eEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcc
Q 023515 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPK 47 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~ 47 (281)
+|.|.|+ |.+|+.++..++..|++|++++++++..+
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G~~V~l~d~~~~~l~ 36 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAGYEVTLYDRSPEALE 36 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTSEEEEE-SSHHHHH
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCCcEEEEECChHHHH
Confidence 5889997 99999999999999999999999876543
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0026 Score=55.72 Aligned_cols=34 Identities=26% Similarity=0.471 Sum_probs=32.0
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRD 42 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~ 42 (281)
+++|.|.||.|.+|..+++.|.+.|++|++.+|+
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 5789999999999999999999999999999985
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0057 Score=46.65 Aligned_cols=34 Identities=29% Similarity=0.245 Sum_probs=30.9
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEE
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASV 40 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~ 40 (281)
.+++++|+|.|| |-+|...++.|++.|++|++++
T Consensus 10 ~l~~~~vlVvGG-G~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 10 NLHNKVVVIIGG-GKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred EcCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEc
Confidence 357999999996 9999999999999999999884
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0042 Score=52.32 Aligned_cols=80 Identities=14% Similarity=0.154 Sum_probs=49.9
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCC---CcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCC
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPN---DPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGC 82 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~---~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 82 (281)
.++++++|.|+ |+.+++++..|...|. +|++++|+.+ +.+.+.+...... ...+.+ .++.+.+.+.+.+.+.
T Consensus 122 ~~~k~vlvlGa-GGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~-~~~~~~--~~~~~~~~l~~~~~~a 197 (288)
T PRK12749 122 IKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENT-DCVVTV--TDLADQQAFAEALASA 197 (288)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhcc-CceEEE--echhhhhhhhhhcccC
Confidence 35789999996 6679999999999994 8999999864 3333333221110 011222 2222222344556689
Q ss_pred cEeEEecc
Q 023515 83 DGVCHTAS 90 (281)
Q Consensus 83 d~Vih~a~ 90 (281)
|+|||+..
T Consensus 198 DivINaTp 205 (288)
T PRK12749 198 DILTNGTK 205 (288)
T ss_pred CEEEECCC
Confidence 99999763
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0016 Score=54.77 Aligned_cols=77 Identities=21% Similarity=0.118 Sum_probs=52.2
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
.++++++|.|+ |+.|++++..|.+.|. +|+++.|+.++.+.+.+..... ..+.. +...+++...+.++|+|
T Consensus 123 ~~~k~vlvlGa-GGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~---~~~~~----~~~~~~~~~~~~~~DiV 194 (282)
T TIGR01809 123 LAGFRGLVIGA-GGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQV---GVITR----LEGDSGGLAIEKAAEVL 194 (282)
T ss_pred cCCceEEEEcC-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhc---Cccee----ccchhhhhhcccCCCEE
Confidence 35789999995 9999999999999995 7999999887766654432111 01111 11112344555689999
Q ss_pred EEeccc
Q 023515 86 CHTASP 91 (281)
Q Consensus 86 ih~a~~ 91 (281)
||+...
T Consensus 195 InaTp~ 200 (282)
T TIGR01809 195 VSTVPA 200 (282)
T ss_pred EECCCC
Confidence 998643
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0052 Score=51.45 Aligned_cols=100 Identities=18% Similarity=0.204 Sum_probs=66.2
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcc-hhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPK-KTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
.++++.|+|+.| +|+--++.-.+.|++|+++++...+.+ ..+.+ +.+.+..-..|++.++++.+-.|.++
T Consensus 181 pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~~~kkeea~~~L--------GAd~fv~~~~d~d~~~~~~~~~dg~~ 251 (360)
T KOG0023|consen 181 PGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSL--------GADVFVDSTEDPDIMKAIMKTTDGGI 251 (360)
T ss_pred CCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCCchhHHHHHHhc--------CcceeEEecCCHHHHHHHHHhhcCcc
Confidence 589999999988 999888888888999999999875443 33333 33333333447777787777677777
Q ss_pred EecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccc
Q 023515 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (281)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (281)
|.+.-+. ..+. ..+++.++.. .++|+++=.
T Consensus 252 ~~v~~~a---~~~~-----------~~~~~~lk~~---Gt~V~vg~p 281 (360)
T KOG0023|consen 252 DTVSNLA---EHAL-----------EPLLGLLKVN---GTLVLVGLP 281 (360)
T ss_pred eeeeecc---ccch-----------HHHHHHhhcC---CEEEEEeCc
Confidence 7764221 2221 2345555554 578887754
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.011 Score=52.28 Aligned_cols=107 Identities=17% Similarity=0.057 Sum_probs=66.5
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhhh-------------------hccCCCCcEEEEE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLL-------------------ALDGASERLQLFK 66 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~-------------------~~~~~~~~~~~~~ 66 (281)
++..+|+|.|+ |++|.+++..|+..|. +++++|.+.-+...+.+.. .......+++.+.
T Consensus 40 L~~~~VlviG~-GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 118 (392)
T PRK07878 40 LKNARVLVIGA-GGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHE 118 (392)
T ss_pred HhcCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEe
Confidence 45789999995 8999999999999995 7888877543222222110 0001113455555
Q ss_pred cCCCCcCcHHHHhcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccc
Q 023515 67 ANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (281)
Q Consensus 67 ~D~~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (281)
..++. +...+++++.|+||.+. + |...-..+-++|.+. ++ .+|+.+..
T Consensus 119 ~~i~~-~~~~~~~~~~D~Vvd~~--------d--------~~~~r~~ln~~~~~~-~~-p~v~~~~~ 166 (392)
T PRK07878 119 FRLDP-SNAVELFSQYDLILDGT--------D--------NFATRYLVNDAAVLA-GK-PYVWGSIY 166 (392)
T ss_pred ccCCh-hHHHHHHhcCCEEEECC--------C--------CHHHHHHHHHHHHHc-CC-CEEEEEec
Confidence 66643 44667788999999764 1 122333466777776 54 47776654
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0017 Score=56.43 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=31.1
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPND 45 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~ 45 (281)
+++|+|+||||++|+++++.|+++. .+++.+.++...
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~ 40 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERS 40 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhh
Confidence 5799999999999999999999876 488888565433
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0021 Score=55.35 Aligned_cols=79 Identities=22% Similarity=0.180 Sum_probs=48.4
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEe
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~ 88 (281)
+|+|.|.| +|-+|..++..|++.|++|++.+|+++..+.+...........+... ...+.-.++..++++++|+||-+
T Consensus 4 ~m~I~iIG-~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~-~~~~~~~~~~~e~~~~aD~Vi~~ 81 (328)
T PRK14618 4 GMRVAVLG-AGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVAL-PAELYPTADPEEALAGADFAVVA 81 (328)
T ss_pred CCeEEEEC-cCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcC-CCCeEEeCCHHHHHcCCCEEEEE
Confidence 45799998 59999999999999999999999977655444432110000001000 00011123455666788888766
Q ss_pred c
Q 023515 89 A 89 (281)
Q Consensus 89 a 89 (281)
.
T Consensus 82 v 82 (328)
T PRK14618 82 V 82 (328)
T ss_pred C
Confidence 4
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0025 Score=56.70 Aligned_cols=80 Identities=18% Similarity=0.167 Sum_probs=49.9
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEE-----EE-EcCCCCcCcHHHHhcCCc
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQ-----LF-KANLLEEGSFDSIVDGCD 83 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-----~~-~~D~~~~~~~~~~~~~~d 83 (281)
|+|.|.| .|++|..++..|++.|++|+++++++.+.+.+..-..... ..++. .+ .+.++-..+..++++++|
T Consensus 1 mkI~vIG-lG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~-e~~l~~~~~~~~~~g~l~~~~~~~~~~~~ad 78 (411)
T TIGR03026 1 MKIAVIG-LGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIY-EPGLDELLAKALAAGRLRATTDYEDAIRDAD 78 (411)
T ss_pred CEEEEEC-CCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCC-CCCHHHHHHHhhhcCCeEEECCHHHHHhhCC
Confidence 3689998 6999999999999999999999998766544332100000 00000 00 011222234566778899
Q ss_pred EeEEeccc
Q 023515 84 GVCHTASP 91 (281)
Q Consensus 84 ~Vih~a~~ 91 (281)
+||-+..-
T Consensus 79 vvii~vpt 86 (411)
T TIGR03026 79 VIIICVPT 86 (411)
T ss_pred EEEEEeCC
Confidence 99988653
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0028 Score=53.72 Aligned_cols=35 Identities=26% Similarity=0.235 Sum_probs=29.7
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDP 43 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~ 43 (281)
|+||.|.||||+.|.+|++.|..+. .++.....+.
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~ 37 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRE 37 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechh
Confidence 6789999999999999999999986 5766665544
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.002 Score=54.44 Aligned_cols=79 Identities=18% Similarity=0.203 Sum_probs=50.4
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhc---cC-CCCcEE-----EEEcCCCCcCcHHHHhc
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLAL---DG-ASERLQ-----LFKANLLEEGSFDSIVD 80 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~---~~-~~~~~~-----~~~~D~~~~~~~~~~~~ 80 (281)
++|.|.|+ |.+|+.++..|++.|++|++.+++++..+.+...... .. ....+. .....++-..++.++++
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA 80 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence 57999996 9999999999999999999999987665543321100 00 000000 00011122245667788
Q ss_pred CCcEeEEec
Q 023515 81 GCDGVCHTA 89 (281)
Q Consensus 81 ~~d~Vih~a 89 (281)
++|+||-+.
T Consensus 81 ~aD~Vi~av 89 (288)
T PRK09260 81 DADLVIEAV 89 (288)
T ss_pred CCCEEEEec
Confidence 999999876
|
|
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0042 Score=54.82 Aligned_cols=37 Identities=30% Similarity=0.198 Sum_probs=33.8
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN 44 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (281)
++|+|||||++..+|.++++.|.+.|++|++++..+.
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~ 39 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKY 39 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 3789999999999999999999999999999988754
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0081 Score=51.25 Aligned_cols=65 Identities=12% Similarity=0.196 Sum_probs=50.0
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+.+++|.|.| .|.||+.+++.|..-|++|++.+|...... .+... ...++++++++++|+|+
T Consensus 134 l~g~tvgIvG-~G~IG~~vA~~l~afG~~V~~~~~~~~~~~-------------~~~~~----~~~~~l~e~l~~aDvvv 195 (312)
T PRK15469 134 REDFTIGILG-AGVLGSKVAQSLQTWGFPLRCWSRSRKSWP-------------GVQSF----AGREELSAFLSQTRVLI 195 (312)
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCCCCCC-------------Cceee----cccccHHHHHhcCCEEE
Confidence 5689999999 799999999999999999999988653211 11111 13457889999999998
Q ss_pred Eec
Q 023515 87 HTA 89 (281)
Q Consensus 87 h~a 89 (281)
.+.
T Consensus 196 ~~l 198 (312)
T PRK15469 196 NLL 198 (312)
T ss_pred ECC
Confidence 775
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0047 Score=53.38 Aligned_cols=26 Identities=23% Similarity=0.551 Sum_probs=23.7
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGY 34 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~ 34 (281)
.++|.|.||||++|..|++.|.+++|
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~h 32 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDF 32 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCC
Confidence 56899999999999999999998765
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0037 Score=53.34 Aligned_cols=70 Identities=23% Similarity=0.239 Sum_probs=47.2
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCC--EEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~ 84 (281)
+..++|.|.| +|.+|..++..|.+.|+ +|++++|+++........ ++.. .. .....++++++|+
T Consensus 4 ~~~~~I~IIG-~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~--------g~~~---~~--~~~~~~~~~~aDv 69 (307)
T PRK07502 4 PLFDRVALIG-IGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL--------GLGD---RV--TTSAAEAVKGADL 69 (307)
T ss_pred cCCcEEEEEe-eCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC--------CCCc---ee--cCCHHHHhcCCCE
Confidence 3357899998 79999999999999884 899999876543332111 1100 01 1234556778999
Q ss_pred eEEecc
Q 023515 85 VCHTAS 90 (281)
Q Consensus 85 Vih~a~ 90 (281)
||.+..
T Consensus 70 Viiavp 75 (307)
T PRK07502 70 VILCVP 75 (307)
T ss_pred EEECCC
Confidence 998863
|
|
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0057 Score=53.68 Aligned_cols=67 Identities=19% Similarity=0.341 Sum_probs=52.4
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
|++|+|.|+ |.+|+.++..+.+.|++|++++.++..... . .--.++.+|..|.+.+.++++.+|+|.
T Consensus 2 ~~~igilG~-Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~--~--------~ad~~~~~~~~D~~~l~~~a~~~dvit 68 (372)
T PRK06019 2 MKTIGIIGG-GQLGRMLALAAAPLGYKVIVLDPDPDSPAA--Q--------VADEVIVADYDDVAALRELAEQCDVIT 68 (372)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCCCCchh--H--------hCceEEecCCCCHHHHHHHHhcCCEEE
Confidence 568999997 899999999999999999999886543211 0 012456688889999999999999864
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0096 Score=45.37 Aligned_cols=58 Identities=28% Similarity=0.297 Sum_probs=43.2
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+.+|+++|.|.+..+|+.++..|.++|..|+.+.... ..+++.++++|+||
T Consensus 34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T-----------------------------~~l~~~~~~ADIVV 84 (160)
T PF02882_consen 34 LEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT-----------------------------KNLQEITRRADIVV 84 (160)
T ss_dssp TTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS-----------------------------SSHHHHHTTSSEEE
T ss_pred CCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC-----------------------------CcccceeeeccEEe
Confidence 5789999999999999999999999998888864331 34566778899999
Q ss_pred EecccCC
Q 023515 87 HTASPFY 93 (281)
Q Consensus 87 h~a~~~~ 93 (281)
-.+|...
T Consensus 85 sa~G~~~ 91 (160)
T PF02882_consen 85 SAVGKPN 91 (160)
T ss_dssp E-SSSTT
T ss_pred eeecccc
Confidence 8887533
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.022 Score=41.37 Aligned_cols=31 Identities=32% Similarity=0.564 Sum_probs=26.7
Q ss_pred eEEEeCCchHHHHHHHHHHHHC-CCEEEEEEc
Q 023515 11 VVCVTGASGYIASWLVKLLLSR-GYTVKASVR 41 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~-g~~V~~~~r 41 (281)
++.|+|++|.+|..+++.|.+. ++++..+..
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~ 32 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAA 32 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEe
Confidence 4889999999999999999985 788888733
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0039 Score=52.13 Aligned_cols=75 Identities=20% Similarity=0.228 Sum_probs=51.2
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
++++++|.|| |+.+++++..|++.| .+++++.|..++.+.+.+...... ..+. ..++.+.+... ..|+||
T Consensus 125 ~~~~vlilGA-GGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~--~~~~--~~~~~~~~~~~----~~dliI 195 (283)
T COG0169 125 TGKRVLILGA-GGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELG--AAVE--AAALADLEGLE----EADLLI 195 (283)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcc--cccc--ccccccccccc----ccCEEE
Confidence 4689999996 889999999999999 689999999988777666543221 0011 11222212111 689999
Q ss_pred Eeccc
Q 023515 87 HTASP 91 (281)
Q Consensus 87 h~a~~ 91 (281)
|+...
T Consensus 196 NaTp~ 200 (283)
T COG0169 196 NATPV 200 (283)
T ss_pred ECCCC
Confidence 98643
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0065 Score=53.22 Aligned_cols=68 Identities=24% Similarity=0.229 Sum_probs=50.2
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
.+.+|+|.|.| .|.||+.+++.|..-|.+|++.+|.....+.. .. . ++.-..+++++++.+|+|
T Consensus 189 ~L~gktVGIvG-~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~-~~-------~-------g~~~~~~l~ell~~aDvV 252 (385)
T PRK07574 189 DLEGMTVGIVG-AGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVE-QE-------L-------GLTYHVSFDSLVSVCDVV 252 (385)
T ss_pred ecCCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEECCCCCchhhH-hh-------c-------CceecCCHHHHhhcCCEE
Confidence 35689999999 59999999999999999999999875322110 00 0 122234688899999998
Q ss_pred EEec
Q 023515 86 CHTA 89 (281)
Q Consensus 86 ih~a 89 (281)
+.+.
T Consensus 253 ~l~l 256 (385)
T PRK07574 253 TIHC 256 (385)
T ss_pred EEcC
Confidence 8765
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.025 Score=46.20 Aligned_cols=36 Identities=28% Similarity=0.264 Sum_probs=29.0
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCC-CEEEE-EEcCCC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRG-YTVKA-SVRDPN 44 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g-~~V~~-~~r~~~ 44 (281)
|++|.|.|++|.+|+.+++.+.+.+ .++.. ++|.++
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~ 39 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGS 39 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCc
Confidence 5689999999999999999999876 56444 566543
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.015 Score=50.98 Aligned_cols=68 Identities=24% Similarity=0.284 Sum_probs=49.8
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
.+.+|+|.|.| .|.||+.+++.|..-|.+|++.+|.....+.... .+ +.-.++++++++.+|+|
T Consensus 196 ~L~gktVGIVG-~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~--------~g-------~~~~~~l~ell~~sDvV 259 (386)
T PLN03139 196 DLEGKTVGTVG-AGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKE--------TG-------AKFEEDLDAMLPKCDVV 259 (386)
T ss_pred CCCCCEEEEEe-ecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhh--------cC-------ceecCCHHHHHhhCCEE
Confidence 46789999999 6999999999999999999998886532211000 01 11224688899999998
Q ss_pred EEec
Q 023515 86 CHTA 89 (281)
Q Consensus 86 ih~a 89 (281)
+.+.
T Consensus 260 ~l~l 263 (386)
T PLN03139 260 VINT 263 (386)
T ss_pred EEeC
Confidence 8765
|
|
| >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0049 Score=53.31 Aligned_cols=74 Identities=22% Similarity=0.240 Sum_probs=48.9
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----CC
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----GC 82 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~ 82 (281)
++++|||.||+|.+|++.++-+...| .+|+..+ +.++.+..+.+- ... ..|..+++..+...+ ++
T Consensus 157 ~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~-s~e~~~l~k~lG------Ad~---vvdy~~~~~~e~~kk~~~~~~ 226 (347)
T KOG1198|consen 157 KGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTAC-SKEKLELVKKLG------ADE---VVDYKDENVVELIKKYTGKGV 226 (347)
T ss_pred CCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEc-ccchHHHHHHcC------CcE---eecCCCHHHHHHHHhhcCCCc
Confidence 47899999999999999999998889 4555444 444444433321 111 235555444444433 59
Q ss_pred cEeEEeccc
Q 023515 83 DGVCHTASP 91 (281)
Q Consensus 83 d~Vih~a~~ 91 (281)
|+|+.|++-
T Consensus 227 DvVlD~vg~ 235 (347)
T KOG1198|consen 227 DVVLDCVGG 235 (347)
T ss_pred cEEEECCCC
Confidence 999999875
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.014 Score=51.44 Aligned_cols=77 Identities=14% Similarity=0.049 Sum_probs=46.6
Q ss_pred eEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEE----EEEcCCCCcCcHHHHhcCCcEeE
Q 023515 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQ----LFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~----~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+|.|.| .|++|..++..|. .||+|+++++++++.+.+.+-...... ..+. -..+.++...+..++++++|+||
T Consensus 2 kI~VIG-lGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e-~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vi 78 (388)
T PRK15057 2 KITISG-TGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVD-KEIQQFLQSDKIHFNATLDKNEAYRDADYVI 78 (388)
T ss_pred EEEEEC-CCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCC-cCHHHHHHhCCCcEEEecchhhhhcCCCEEE
Confidence 688897 6999999996665 599999999998776554432110000 0000 00112222223445567899999
Q ss_pred Eecc
Q 023515 87 HTAS 90 (281)
Q Consensus 87 h~a~ 90 (281)
-+..
T Consensus 79 i~Vp 82 (388)
T PRK15057 79 IATP 82 (388)
T ss_pred EeCC
Confidence 8764
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0026 Score=57.56 Aligned_cols=70 Identities=14% Similarity=0.078 Sum_probs=47.3
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+.+++++|+|+ |.+|++++..|.+.|++|++.+|+.++.+.+.... +... .+..+ +.. ++++|+||
T Consensus 330 ~~~k~vlIiGa-GgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~-------~~~~--~~~~~---~~~-l~~~DiVI 395 (477)
T PRK09310 330 LNNQHVAIVGA-GGAAKAIATTLARAGAELLIFNRTKAHAEALASRC-------QGKA--FPLES---LPE-LHRIDIII 395 (477)
T ss_pred cCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-------ccce--echhH---hcc-cCCCCEEE
Confidence 45789999995 89999999999999999999988765444332211 0111 11211 111 45789999
Q ss_pred Eecc
Q 023515 87 HTAS 90 (281)
Q Consensus 87 h~a~ 90 (281)
++..
T Consensus 396 natP 399 (477)
T PRK09310 396 NCLP 399 (477)
T ss_pred EcCC
Confidence 9874
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0045 Score=51.70 Aligned_cols=70 Identities=26% Similarity=0.238 Sum_probs=44.8
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHC--CCEEEEE-EcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCc
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSR--GYTVKAS-VRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCD 83 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~--g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d 83 (281)
|++++|.|.| +|.||+.+++.|.+. ++++..+ +|++++...+.... +. ..-..+++++++++|
T Consensus 4 m~~irIGIIG-~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~-------g~------~~~~~~~eell~~~D 69 (271)
T PRK13302 4 RPELRVAIAG-LGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGL-------RR------PPPVVPLDQLATHAD 69 (271)
T ss_pred CCeeEEEEEC-ccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhc-------CC------CcccCCHHHHhcCCC
Confidence 4468899999 599999999999873 6887755 44443332221110 00 011234666677899
Q ss_pred EeEEecc
Q 023515 84 GVCHTAS 90 (281)
Q Consensus 84 ~Vih~a~ 90 (281)
+|+-++.
T Consensus 70 ~Vvi~tp 76 (271)
T PRK13302 70 IVVEAAP 76 (271)
T ss_pred EEEECCC
Confidence 9998874
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0044 Score=52.53 Aligned_cols=65 Identities=18% Similarity=0.279 Sum_probs=47.2
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEe
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~ 88 (281)
+++|.|.| .|.+|..+++.|.+.|++|++.+|++.+...+... ++. -.+++.++++++|+||-+
T Consensus 2 ~~~IgviG-~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~--------g~~-------~~~~~~e~~~~~d~vi~~ 65 (296)
T PRK11559 2 TMKVGFIG-LGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAA--------GAE-------TASTAKAVAEQCDVIITM 65 (296)
T ss_pred CceEEEEc-cCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHC--------CCe-------ecCCHHHHHhcCCEEEEe
Confidence 35799998 69999999999999999999999877544332211 111 123456677889999887
Q ss_pred c
Q 023515 89 A 89 (281)
Q Consensus 89 a 89 (281)
.
T Consensus 66 v 66 (296)
T PRK11559 66 L 66 (296)
T ss_pred C
Confidence 5
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0026 Score=59.51 Aligned_cols=72 Identities=18% Similarity=0.260 Sum_probs=57.6
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHH-hcCCcEeEE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI-VDGCDGVCH 87 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~Vih 87 (281)
.++|+|.| .|.+|+.+++.|.++|+++++++.+++..+.+.+ .+...+.||.++++.++++ ++++|.||-
T Consensus 400 ~~~vII~G-~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~--------~g~~v~~GDat~~~~L~~agi~~A~~vvv 470 (621)
T PRK03562 400 QPRVIIAG-FGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK--------FGMKVFYGDATRMDLLESAGAAKAEVLIN 470 (621)
T ss_pred cCcEEEEe-cChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh--------cCCeEEEEeCCCHHHHHhcCCCcCCEEEE
Confidence 36799999 5999999999999999999999998876554332 2577899999998877764 457888886
Q ss_pred ec
Q 023515 88 TA 89 (281)
Q Consensus 88 ~a 89 (281)
+-
T Consensus 471 ~~ 472 (621)
T PRK03562 471 AI 472 (621)
T ss_pred Ee
Confidence 53
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0051 Score=52.15 Aligned_cols=64 Identities=16% Similarity=0.128 Sum_probs=46.4
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEec
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a 89 (281)
++|.|.| .|.+|..+++.|++.|++|++.+|++++.+.+... ++ ....+..++++++|+||-+.
T Consensus 2 ~~Ig~IG-lG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~--------g~-------~~~~s~~~~~~~aDvVi~~v 65 (296)
T PRK15461 2 AAIAFIG-LGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDK--------GA-------TPAASPAQAAAGAEFVITML 65 (296)
T ss_pred CeEEEEe-eCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHc--------CC-------cccCCHHHHHhcCCEEEEec
Confidence 4789998 69999999999999999999999987655443221 11 11234556677888888764
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0084 Score=51.18 Aligned_cols=36 Identities=25% Similarity=0.304 Sum_probs=32.0
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN 44 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (281)
++|+|.|.| +|.+|+++++.|.+.|++|++.+|+..
T Consensus 3 ~~m~I~iiG-~G~~G~~lA~~l~~~G~~V~~~~r~~~ 38 (308)
T PRK14619 3 QPKTIAILG-AGAWGSTLAGLASANGHRVRVWSRRSG 38 (308)
T ss_pred CCCEEEEEC-ccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 356899998 599999999999999999999998764
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0076 Score=50.69 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=45.9
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEE-cCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASV-RDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
+.+|+|.|.|-++.+|+.++..|+++|+.|++.. |.. .+.++++++|+|
T Consensus 156 ~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~------------------------------~l~e~~~~ADIV 205 (296)
T PRK14188 156 LSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR------------------------------DLPAVCRRADIL 205 (296)
T ss_pred CCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC------------------------------CHHHHHhcCCEE
Confidence 5799999999999999999999999999999884 321 146677788999
Q ss_pred EEeccc
Q 023515 86 CHTASP 91 (281)
Q Consensus 86 ih~a~~ 91 (281)
|-+.+.
T Consensus 206 Isavg~ 211 (296)
T PRK14188 206 VAAVGR 211 (296)
T ss_pred EEecCC
Confidence 988764
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0042 Score=52.57 Aligned_cols=40 Identities=25% Similarity=0.243 Sum_probs=34.5
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcch
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKK 48 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~ 48 (281)
..++|.|.|+ |.+|..++..|+.+|++|++.+|+++..+.
T Consensus 3 ~~~kI~vIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 42 (292)
T PRK07530 3 AIKKVGVIGA-GQMGNGIAHVCALAGYDVLLNDVSADRLEA 42 (292)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHH
Confidence 3578999995 999999999999999999999998765443
|
|
| >cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.004 Score=53.36 Aligned_cols=41 Identities=34% Similarity=0.411 Sum_probs=35.2
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcch
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKK 48 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~ 48 (281)
.+.+++|+||+|.+|.++++.+...|.+|+.+.+++++.+.
T Consensus 162 ~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~ 202 (332)
T cd08259 162 KGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLKI 202 (332)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHH
Confidence 36789999999999999999999999999999887654433
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. |
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0046 Score=52.00 Aligned_cols=65 Identities=22% Similarity=0.189 Sum_probs=44.3
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEec
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a 89 (281)
|+|.|.| .|.+|..++..|.+.|++|++.+|+++..+..... ..+ +... ... +.++++|+||-+.
T Consensus 1 m~I~IIG-~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~-------g~~-----~~~~-~~~-~~~~~aDlVilav 65 (279)
T PRK07417 1 MKIGIVG-LGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIER-------GLV-----DEAS-TDL-SLLKDCDLVILAL 65 (279)
T ss_pred CeEEEEe-ecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC-------CCc-----cccc-CCH-hHhcCCCEEEEcC
Confidence 3699998 79999999999999999999999876543332211 001 1111 112 3467899999775
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.022 Score=50.27 Aligned_cols=108 Identities=18% Similarity=0.144 Sum_probs=66.7
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhh-------------------hhccCCCCcEEEE
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHL-------------------LALDGASERLQLF 65 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~-------------------~~~~~~~~~~~~~ 65 (281)
.++..+|+|.|+ |++|.++++.|+..|. +++++|.+.-....+.+. .+......+++.+
T Consensus 35 ~L~~~~VlivG~-GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~ 113 (390)
T PRK07411 35 RLKAASVLCIGT-GGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLY 113 (390)
T ss_pred HHhcCcEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence 346789999995 8999999999999994 788887764332222211 0000112356666
Q ss_pred EcCCCCcCcHHHHhcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccc
Q 023515 66 KANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (281)
Q Consensus 66 ~~D~~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (281)
...++. +...+++++.|+||.+. ++ ...-..+-++|.+. ++ .+|+.+..
T Consensus 114 ~~~~~~-~~~~~~~~~~D~Vvd~~--------d~--------~~~r~~ln~~~~~~-~~-p~v~~~~~ 162 (390)
T PRK07411 114 ETRLSS-ENALDILAPYDVVVDGT--------DN--------FPTRYLVNDACVLL-NK-PNVYGSIF 162 (390)
T ss_pred ecccCH-HhHHHHHhCCCEEEECC--------CC--------HHHHHHHHHHHHHc-CC-CEEEEEEc
Confidence 666654 44567788999999875 22 22223455677776 43 46665543
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0048 Score=52.18 Aligned_cols=38 Identities=24% Similarity=0.307 Sum_probs=33.5
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcc
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPK 47 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~ 47 (281)
.++|.|.|+ |.+|..++..|+..|++|++.+++++..+
T Consensus 3 i~~I~ViGa-G~mG~~iA~~la~~G~~V~l~d~~~~~l~ 40 (291)
T PRK06035 3 IKVIGVVGS-GVMGQGIAQVFARTGYDVTIVDVSEEILK 40 (291)
T ss_pred CcEEEEECc-cHHHHHHHHHHHhcCCeEEEEeCCHHHHH
Confidence 468999995 99999999999999999999999876544
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0029 Score=43.82 Aligned_cols=65 Identities=20% Similarity=0.229 Sum_probs=45.4
Q ss_pred eEEEeCCchHHHHHHHHHHHHCC---CEEEEE-EcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 11 VVCVTGASGYIASWLVKLLLSRG---YTVKAS-VRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g---~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
||.|.| +|.+|.+|++.|++.| ++|... .|++++...+.... .+.+.. .+..++++..|+||
T Consensus 1 kI~iIG-~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~-------~~~~~~------~~~~~~~~~advvi 66 (96)
T PF03807_consen 1 KIGIIG-AGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY-------GVQATA------DDNEEAAQEADVVI 66 (96)
T ss_dssp EEEEES-TSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC-------TTEEES------EEHHHHHHHTSEEE
T ss_pred CEEEEC-CCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh-------cccccc------CChHHhhccCCEEE
Confidence 577775 7999999999999999 999965 88776665544331 111211 23566777899999
Q ss_pred Eec
Q 023515 87 HTA 89 (281)
Q Consensus 87 h~a 89 (281)
-+.
T Consensus 67 lav 69 (96)
T PF03807_consen 67 LAV 69 (96)
T ss_dssp E-S
T ss_pred EEE
Confidence 875
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.034 Score=46.36 Aligned_cols=43 Identities=26% Similarity=0.410 Sum_probs=32.4
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchh
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKT 49 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~ 49 (281)
.+++.-|+|.|+ |++|++++..|++.|+ ++.+++-+.-....+
T Consensus 71 kl~~syVVVVG~-GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSL 114 (430)
T KOG2018|consen 71 KLTNSYVVVVGA-GGVGSWVANMLLRSGVQKIRIVDFDQVSLSSL 114 (430)
T ss_pred HhcCcEEEEEec-CchhHHHHHHHHHhcCceEEEechhhccHhhh
Confidence 345666888885 8999999999999996 577777665444443
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0054 Score=52.96 Aligned_cols=42 Identities=24% Similarity=0.264 Sum_probs=35.9
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchh
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKT 49 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~ 49 (281)
.+.+|+|+||+|.+|..+++.+...|.+|+++++++++.+.+
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~ 192 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLL 192 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 468999999999999999998888999999998887655443
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.024 Score=49.53 Aligned_cols=62 Identities=18% Similarity=0.154 Sum_probs=45.7
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+.+++|.|.| .|.||+.+++.|..-|.+|++.++..... . +.....+++++++++|+|+
T Consensus 114 L~gktvGIIG-~G~IG~~vA~~l~a~G~~V~~~dp~~~~~--------------~------~~~~~~~L~ell~~sDiI~ 172 (378)
T PRK15438 114 LHDRTVGIVG-VGNVGRRLQARLEALGIKTLLCDPPRADR--------------G------DEGDFRSLDELVQEADILT 172 (378)
T ss_pred cCCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEECCccccc--------------c------cccccCCHHHHHhhCCEEE
Confidence 4689999999 59999999999999999999997532110 0 0012346788888888876
Q ss_pred Eec
Q 023515 87 HTA 89 (281)
Q Consensus 87 h~a 89 (281)
...
T Consensus 173 lh~ 175 (378)
T PRK15438 173 FHT 175 (378)
T ss_pred EeC
Confidence 544
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0091 Score=51.75 Aligned_cols=79 Identities=20% Similarity=0.143 Sum_probs=51.5
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+.++++.|.| .|.||+++++.|..-|.+|++.+|....... ..+. ... ..+...........+++++++++|+|+
T Consensus 157 l~gktvGIiG-~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~-~~~~-~~~--~~~~~~~~~~~~~~~L~ell~~aDiVv 231 (347)
T PLN02928 157 LFGKTVFILG-YGAIGIELAKRLRPFGVKLLATRRSWTSEPE-DGLL-IPN--GDVDDLVDEKGGHEDIYEFAGEADIVV 231 (347)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHhhCCCEEEEECCCCChhhh-hhhc-ccc--ccccccccccCcccCHHHHHhhCCEEE
Confidence 5689999999 5999999999999999999999886432111 0000 000 000110011114567899999999998
Q ss_pred Eecc
Q 023515 87 HTAS 90 (281)
Q Consensus 87 h~a~ 90 (281)
.+..
T Consensus 232 l~lP 235 (347)
T PLN02928 232 LCCT 235 (347)
T ss_pred ECCC
Confidence 8763
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0049 Score=52.17 Aligned_cols=79 Identities=22% Similarity=0.195 Sum_probs=53.9
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEe
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~ 88 (281)
+++|.|.|+ |-=|++|+..|.++||+|+.-.|+++....+.....+....+++ .+..++.-..++.++++++|+|+-.
T Consensus 1 ~~kI~ViGa-GswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i-~lp~~l~at~Dl~~a~~~ad~iv~a 78 (329)
T COG0240 1 MMKIAVIGA-GSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGI-LLPPNLKATTDLAEALDGADIIVIA 78 (329)
T ss_pred CceEEEEcC-ChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCc-cCCcccccccCHHHHHhcCCEEEEE
Confidence 357999996 77799999999999999999999987655544332111111111 1223344456788899899998865
Q ss_pred c
Q 023515 89 A 89 (281)
Q Consensus 89 a 89 (281)
.
T Consensus 79 v 79 (329)
T COG0240 79 V 79 (329)
T ss_pred C
Confidence 3
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0082 Score=51.66 Aligned_cols=64 Identities=20% Similarity=0.214 Sum_probs=48.5
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
.+.+++|.|.| .|.||+.+++.|...|++|++.+|.+..... .. .-..+++++++++|+|
T Consensus 143 ~l~g~~VgIIG-~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~------------~~-------~~~~~l~ell~~aDiV 202 (330)
T PRK12480 143 PVKNMTVAIIG-TGRIGAATAKIYAGFGATITAYDAYPNKDLD------------FL-------TYKDSVKEAIKDADII 202 (330)
T ss_pred ccCCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEeCChhHhhh------------hh-------hccCCHHHHHhcCCEE
Confidence 35688999999 5999999999999999999999987532110 01 1124578889999998
Q ss_pred EEec
Q 023515 86 CHTA 89 (281)
Q Consensus 86 ih~a 89 (281)
+-+.
T Consensus 203 il~l 206 (330)
T PRK12480 203 SLHV 206 (330)
T ss_pred EEeC
Confidence 8665
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0058 Score=51.33 Aligned_cols=78 Identities=14% Similarity=0.241 Sum_probs=51.2
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
.++++++|.|+ |+.|++++..|.+.|. ++++++|+.++.+.+......... ... ....+. ..+...+..+|+|
T Consensus 125 ~~~k~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~-~~~-~~~~~~---~~~~~~~~~~div 198 (283)
T PRK14027 125 AKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVG-REA-VVGVDA---RGIEDVIAAADGV 198 (283)
T ss_pred cCCCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccC-cce-EEecCH---hHHHHHHhhcCEE
Confidence 34689999996 9999999999999995 799999987776665443221110 111 111221 2233345678999
Q ss_pred EEecc
Q 023515 86 CHTAS 90 (281)
Q Consensus 86 ih~a~ 90 (281)
||+..
T Consensus 199 INaTp 203 (283)
T PRK14027 199 VNATP 203 (283)
T ss_pred EEcCC
Confidence 99864
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.009 Score=51.03 Aligned_cols=73 Identities=19% Similarity=0.244 Sum_probs=53.7
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 87 (281)
.+++|+|+|+. ++|...++.+...|.+|++++|++++.+...++ ....+...- |++..+.+-+..|++|.
T Consensus 166 pG~~V~I~G~G-GlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~l--------GAd~~i~~~-~~~~~~~~~~~~d~ii~ 235 (339)
T COG1064 166 PGKWVAVVGAG-GLGHMAVQYAKAMGAEVIAITRSEEKLELAKKL--------GADHVINSS-DSDALEAVKEIADAIID 235 (339)
T ss_pred CCCEEEEECCc-HHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHh--------CCcEEEEcC-CchhhHHhHhhCcEEEE
Confidence 47899999985 999999999888999999999999877665444 122222222 55555555555899999
Q ss_pred ecc
Q 023515 88 TAS 90 (281)
Q Consensus 88 ~a~ 90 (281)
+++
T Consensus 236 tv~ 238 (339)
T COG1064 236 TVG 238 (339)
T ss_pred CCC
Confidence 875
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.015 Score=46.41 Aligned_cols=71 Identities=15% Similarity=0.132 Sum_probs=47.5
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
.+++++|+|.|| |-+|...++.|++.|++|+++.+... ..+..+.. ...+.+....+. ...++++|+|
T Consensus 7 ~l~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~VIs~~~~--~~l~~l~~----~~~i~~~~~~~~-----~~~l~~adlV 74 (202)
T PRK06718 7 DLSNKRVVIVGG-GKVAGRRAITLLKYGAHIVVISPELT--ENLVKLVE----EGKIRWKQKEFE-----PSDIVDAFLV 74 (202)
T ss_pred EcCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEcCCCC--HHHHHHHh----CCCEEEEecCCC-----hhhcCCceEE
Confidence 467999999997 99999999999999999999975432 22222211 123555443332 2335678888
Q ss_pred EEe
Q 023515 86 CHT 88 (281)
Q Consensus 86 ih~ 88 (281)
|-+
T Consensus 75 iaa 77 (202)
T PRK06718 75 IAA 77 (202)
T ss_pred EEc
Confidence 864
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.014 Score=43.40 Aligned_cols=57 Identities=30% Similarity=0.228 Sum_probs=46.8
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+++++|.|.|.+.-+|+.++..|.++|.+|+.+.++. .++++.++++|+||
T Consensus 26 ~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t-----------------------------~~l~~~v~~ADIVv 76 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT-----------------------------IQLQSKVHDADVVV 76 (140)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC-----------------------------cCHHHHHhhCCEEE
Confidence 5799999999999999999999999999988886432 13566778889999
Q ss_pred EecccC
Q 023515 87 HTASPF 92 (281)
Q Consensus 87 h~a~~~ 92 (281)
-..+..
T Consensus 77 sAtg~~ 82 (140)
T cd05212 77 VGSPKP 82 (140)
T ss_pred EecCCC
Confidence 887643
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0026 Score=54.39 Aligned_cols=73 Identities=18% Similarity=0.217 Sum_probs=60.7
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcC-cHHHHhcCCcEeE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEG-SFDSIVDGCDGVC 86 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~d~Vi 86 (281)
+++||+.| +||+-+.+++.|.+++ .+|++.+|...+.+.+.. ..+++.+..|+.+.+ .++..++..|.|+
T Consensus 2 ~~~vlllg-sg~v~~p~~d~ls~~~dv~vtva~~~~~~~~~~~~-------~~~~~av~ldv~~~~~~L~~~v~~~D~vi 73 (445)
T KOG0172|consen 2 KKGVLLLG-SGFVSRPVADFLSRKKDVNVTVASRTLKDAEALVK-------GINIKAVSLDVADEELALRKEVKPLDLVI 73 (445)
T ss_pred CcceEEec-CccccchHHHHHhhcCCceEEEehhhHHHHHHHhc-------CCCccceEEEccchHHHHHhhhcccceee
Confidence 67899999 5999999999999886 689999988766655433 235889999999988 8899999999998
Q ss_pred Eec
Q 023515 87 HTA 89 (281)
Q Consensus 87 h~a 89 (281)
.+-
T Consensus 74 SLl 76 (445)
T KOG0172|consen 74 SLL 76 (445)
T ss_pred eec
Confidence 875
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.013 Score=49.04 Aligned_cols=64 Identities=19% Similarity=0.129 Sum_probs=46.7
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCc-chhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEe
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP-KKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~ 88 (281)
++|...| .|..|..++..|+++||+|++.+|++++. +.+... +. .-.+...++++.+|+||-+
T Consensus 1 ~kIafIG-LG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~--------Ga-------~~a~s~~eaa~~aDvVitm 64 (286)
T COG2084 1 MKIAFIG-LGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAA--------GA-------TVAASPAEAAAEADVVITM 64 (286)
T ss_pred CeEEEEc-CchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHc--------CC-------cccCCHHHHHHhCCEEEEe
Confidence 3677888 79999999999999999999999998873 332221 11 1123346677788888887
Q ss_pred c
Q 023515 89 A 89 (281)
Q Consensus 89 a 89 (281)
.
T Consensus 65 v 65 (286)
T COG2084 65 L 65 (286)
T ss_pred c
Confidence 5
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0058 Score=54.39 Aligned_cols=71 Identities=18% Similarity=0.207 Sum_probs=51.5
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
+.+++|+|.|+ |.+|..+++.|...| .+|++++|+..+...+.... +...+ +.+++.+++.++|+|
T Consensus 178 l~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~-------g~~~i-----~~~~l~~~l~~aDvV 244 (417)
T TIGR01035 178 LKGKKALLIGA-GEMGELVAKHLLRKGVGKILIANRTYERAEDLAKEL-------GGEAV-----KFEDLEEYLAEADIV 244 (417)
T ss_pred ccCCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc-------CCeEe-----eHHHHHHHHhhCCEE
Confidence 45789999996 999999999999999 78999999876543332211 11111 123566777899999
Q ss_pred EEecc
Q 023515 86 CHTAS 90 (281)
Q Consensus 86 ih~a~ 90 (281)
|.+.+
T Consensus 245 i~aT~ 249 (417)
T TIGR01035 245 ISSTG 249 (417)
T ss_pred EECCC
Confidence 99865
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0043 Score=53.01 Aligned_cols=71 Identities=20% Similarity=0.220 Sum_probs=51.1
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
+.+++|+|.|+ |.+|..+++.|...| .+|++++|++++...+.... +... .+.+++.+.++++|+|
T Consensus 176 l~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~-------g~~~-----~~~~~~~~~l~~aDvV 242 (311)
T cd05213 176 LKGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL-------GGNA-----VPLDELLELLNEADVV 242 (311)
T ss_pred ccCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc-------CCeE-----EeHHHHHHHHhcCCEE
Confidence 45889999996 999999999999876 78999999876554433221 1111 1223466777889999
Q ss_pred EEecc
Q 023515 86 CHTAS 90 (281)
Q Consensus 86 ih~a~ 90 (281)
|.+.+
T Consensus 243 i~at~ 247 (311)
T cd05213 243 ISATG 247 (311)
T ss_pred EECCC
Confidence 99875
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PF08643 DUF1776: Fungal family of unknown function (DUF1776); InterPro: IPR013952 This is a fungal protein of unknown function | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.044 Score=46.10 Aligned_cols=163 Identities=15% Similarity=0.138 Sum_probs=96.4
Q ss_pred CCeEEEeCC-chHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------
Q 023515 9 GKVVCVTGA-SGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------- 80 (281)
Q Consensus 9 ~~~ilItGa-tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------- 80 (281)
+..|+|.|. +-=+++.++..|-++|+-|++++.+.++...++.+. ...+.....|..++..+...+.
T Consensus 3 ~evVvI~Gs~~~PltR~la~DLeRRGFIV~v~~~~~ed~~~ve~e~-----~~dI~~L~ld~~~~~~~~~~l~~f~~~L~ 77 (299)
T PF08643_consen 3 KEVVVIAGSPHDPLTRSLALDLERRGFIVYVTVSSAEDEKYVESED-----RPDIRPLWLDDSDPSSIHASLSRFASLLS 77 (299)
T ss_pred eeEEEEECCCCCccHHHHHHHHhhCCeEEEEEeCCHHHHHHHHhcc-----CCCCCCcccCCCCCcchHHHHHHHHHHhc
Confidence 346889995 788999999999999999999999876655544432 1346666677766654444332
Q ss_pred CC--------cEeEEecc------------cCCCCCCCccchhhhhHHHHHHHHHHHhhhCC-----CccEEEEe-ccce
Q 023515 81 GC--------DGVCHTAS------------PFYHDAKDPQVELLDPAVKGTLNVLNSCAKFP-----SIKRVVLT-SSMA 134 (281)
Q Consensus 81 ~~--------d~Vih~a~------------~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-----~~~~~v~~-SS~~ 134 (281)
.. ....++.| ++.......|...++.|+.-....++...+.. ...++|.+ -|+.
T Consensus 78 ~p~~p~~~~~~h~l~L~svi~~Psl~yp~gPie~i~~s~~~~~ln~~ll~~~~~~q~lLPlL~~~~~~~~~iil~~Psi~ 157 (299)
T PF08643_consen 78 RPHVPFPGAPPHHLQLKSVIFIPSLSYPTGPIETISPSSWADELNTRLLTPILTIQGLLPLLRSRSNQKSKIILFNPSIS 157 (299)
T ss_pred CCCCCCCCCCCceeEEEEEEEecCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEeCchh
Confidence 11 12233333 12222334566778888887777777776642 22344444 3442
Q ss_pred eeecCCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCccc
Q 023515 135 AVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVI 198 (281)
Q Consensus 135 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~ 198 (281)
.-... + .+.+-.....+.+.+...+.++ .+++++.++.|++.
T Consensus 158 ssl~~--P--------------------fhspE~~~~~al~~~~~~LrrEl~~~~I~V~~i~LG~l~ 202 (299)
T PF08643_consen 158 SSLNP--P--------------------FHSPESIVSSALSSFFTSLRRELRPHNIDVTQIKLGNLD 202 (299)
T ss_pred hccCC--C--------------------ccCHHHHHHHHHHHHHHHHHHHhhhcCCceEEEEeeeec
Confidence 22111 0 1122334444444444444444 46999999999884
|
One of the proteins P32792 from SWISSPROT has been localised to the mitochondria []. |
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0041 Score=56.60 Aligned_cols=74 Identities=23% Similarity=0.252 Sum_probs=53.0
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
+.+++|+|.|+ |.+|+.+++.|...|. +|+++.|+.++...+..... +.... ....+++.+++.++|+|
T Consensus 264 l~~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~------g~~i~---~~~~~dl~~al~~aDVV 333 (519)
T PLN00203 264 HASARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFP------DVEII---YKPLDEMLACAAEADVV 333 (519)
T ss_pred CCCCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhC------CCceE---eecHhhHHHHHhcCCEE
Confidence 55789999997 9999999999999995 79999998766555433210 11111 12223456777899999
Q ss_pred EEecc
Q 023515 86 CHTAS 90 (281)
Q Consensus 86 ih~a~ 90 (281)
|.+.+
T Consensus 334 IsAT~ 338 (519)
T PLN00203 334 FTSTS 338 (519)
T ss_pred EEccC
Confidence 98764
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0081 Score=51.81 Aligned_cols=66 Identities=15% Similarity=0.132 Sum_probs=49.1
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
.+.+++|.|.| .|.||+.+++.|...|.+|++.+|....... .. .++ ...+++++++++|+|
T Consensus 147 ~L~gktvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~--~~-------~~~--------~~~~l~ell~~aDiV 208 (333)
T PRK13243 147 DVYGKTIGIIG-FGRIGQAVARRAKGFGMRILYYSRTRKPEAE--KE-------LGA--------EYRPLEELLRESDFV 208 (333)
T ss_pred CCCCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEECCCCChhhH--HH-------cCC--------EecCHHHHHhhCCEE
Confidence 35789999999 5999999999999999999999886532210 00 011 123578888999998
Q ss_pred EEec
Q 023515 86 CHTA 89 (281)
Q Consensus 86 ih~a 89 (281)
+.+.
T Consensus 209 ~l~l 212 (333)
T PRK13243 209 SLHV 212 (333)
T ss_pred EEeC
Confidence 8776
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0045 Score=52.14 Aligned_cols=37 Identities=19% Similarity=0.193 Sum_probs=33.0
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCc
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP 46 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~ 46 (281)
+++|.|.|+ |.+|..++..|+..|++|++++++++..
T Consensus 3 ~~kI~VIG~-G~mG~~ia~~la~~g~~V~~~d~~~~~~ 39 (282)
T PRK05808 3 IQKIGVIGA-GTMGNGIAQVCAVAGYDVVMVDISDAAV 39 (282)
T ss_pred ccEEEEEcc-CHHHHHHHHHHHHCCCceEEEeCCHHHH
Confidence 568999995 9999999999999999999999887654
|
|
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.026 Score=53.16 Aligned_cols=108 Identities=17% Similarity=0.166 Sum_probs=68.1
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhh-------------------hhccCCCCcEEEE
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHL-------------------LALDGASERLQLF 65 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~-------------------~~~~~~~~~~~~~ 65 (281)
.++..+|+|.| .|++|++++..|+..|. +++++|.+.-....+.+. ........+++.+
T Consensus 40 kL~~~~VlIvG-~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~ 118 (679)
T PRK14851 40 RLAEAKVAIPG-MGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPF 118 (679)
T ss_pred HHhcCeEEEEC-cCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEE
Confidence 35678999999 69999999999999994 777777653222222211 0001112467777
Q ss_pred EcCCCCcCcHHHHhcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEec
Q 023515 66 KANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131 (281)
Q Consensus 66 ~~D~~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S 131 (281)
...++ .+.+.++++++|+||.+. +.. .+..-..+.+.|.+. ++. +|+.+
T Consensus 119 ~~~i~-~~n~~~~l~~~DvVid~~--------D~~------~~~~r~~l~~~c~~~-~iP-~i~~g 167 (679)
T PRK14851 119 PAGIN-ADNMDAFLDGVDVVLDGL--------DFF------QFEIRRTLFNMAREK-GIP-VITAG 167 (679)
T ss_pred ecCCC-hHHHHHHHhCCCEEEECC--------CCC------cHHHHHHHHHHHHHC-CCC-EEEee
Confidence 77775 456788889999999654 110 112224566778876 553 55544
|
|
| >PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.011 Score=52.35 Aligned_cols=70 Identities=16% Similarity=0.193 Sum_probs=52.4
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--CCcEe
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGV 85 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~V 85 (281)
+.|+|+|+|+ |..|+.++..+.+.|++|+.++.++...... . .-.++..|..|.+.+.++++ ++|.|
T Consensus 11 ~~~~ilIiG~-g~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~--~--------ad~~~~~~~~d~~~l~~~~~~~~id~v 79 (395)
T PRK09288 11 SATRVMLLGS-GELGKEVAIEAQRLGVEVIAVDRYANAPAMQ--V--------AHRSHVIDMLDGDALRAVIEREKPDYI 79 (395)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCCchHH--h--------hhheEECCCCCHHHHHHHHHHhCCCEE
Confidence 3568999995 7899999999999999999999876432220 0 01245677888888888877 78988
Q ss_pred EEe
Q 023515 86 CHT 88 (281)
Q Consensus 86 ih~ 88 (281)
+-.
T Consensus 80 i~~ 82 (395)
T PRK09288 80 VPE 82 (395)
T ss_pred EEe
Confidence 754
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.03 Score=49.09 Aligned_cols=62 Identities=21% Similarity=0.327 Sum_probs=45.9
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+.+++|.|.| .|.||+.+++.|..-|++|++.++...... .. ....+++++++++|+|+
T Consensus 114 l~gktvGIIG-~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~------------~~--------~~~~~l~ell~~aDiV~ 172 (381)
T PRK00257 114 LAERTYGVVG-AGHVGGRLVRVLRGLGWKVLVCDPPRQEAE------------GD--------GDFVSLERILEECDVIS 172 (381)
T ss_pred cCcCEEEEEC-CCHHHHHHHHHHHHCCCEEEEECCcccccc------------cC--------ccccCHHHHHhhCCEEE
Confidence 4689999999 599999999999999999999976432110 00 11235788888899876
Q ss_pred Eec
Q 023515 87 HTA 89 (281)
Q Consensus 87 h~a 89 (281)
...
T Consensus 173 lh~ 175 (381)
T PRK00257 173 LHT 175 (381)
T ss_pred EeC
Confidence 554
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.014 Score=49.59 Aligned_cols=64 Identities=17% Similarity=0.072 Sum_probs=48.2
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
.+.+++|.|.| .|.||+++++.|..-|++|++.+|..... ++.. ...+++++++++|+|
T Consensus 119 ~L~gktvgIiG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------------~~~~------~~~~l~ell~~aDiv 177 (303)
T PRK06436 119 LLYNKSLGILG-YGGIGRRVALLAKAFGMNIYAYTRSYVND--------------GISS------IYMEPEDIMKKSDFV 177 (303)
T ss_pred CCCCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEECCCCccc--------------Cccc------ccCCHHHHHhhCCEE
Confidence 45689999999 69999999998887899999999864321 1110 023578888899998
Q ss_pred EEecc
Q 023515 86 CHTAS 90 (281)
Q Consensus 86 ih~a~ 90 (281)
+.+..
T Consensus 178 ~~~lp 182 (303)
T PRK06436 178 LISLP 182 (303)
T ss_pred EECCC
Confidence 87763
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0071 Score=51.90 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=35.4
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchh
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKT 49 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~ 49 (281)
.+.+|+|+||+|.+|..+++.+...|.+|+++++++++.+.+
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~ 179 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYL 179 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 467999999999999999988888899999998876655443
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.006 Score=51.60 Aligned_cols=63 Identities=14% Similarity=0.177 Sum_probs=46.0
Q ss_pred eEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEec
Q 023515 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a 89 (281)
+|.|.| .|.+|..+++.|++.|++|++.+|++++.+.+... +. ....+..++++++|+||-+.
T Consensus 1 ~IgvIG-~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~--------g~-------~~~~~~~~~~~~aDivi~~v 63 (291)
T TIGR01505 1 KVGFIG-LGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAA--------GA-------VTAETARQVTEQADVIFTMV 63 (291)
T ss_pred CEEEEE-ecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHC--------CC-------cccCCHHHHHhcCCEEEEec
Confidence 377887 69999999999999999999999987554432221 11 11234567778899998875
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.011 Score=49.34 Aligned_cols=57 Identities=19% Similarity=0.219 Sum_probs=46.7
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+.+|+|.|.|-||.+|+.++..|+++|++|++.. +++ ..+.+.++++|+||
T Consensus 156 l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~---s~t--------------------------~~l~~~~~~ADIVI 206 (284)
T PRK14179 156 LEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTH---SRT--------------------------RNLAEVARKADILV 206 (284)
T ss_pred CCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEEC---CCC--------------------------CCHHHHHhhCCEEE
Confidence 5799999999999999999999999999998871 111 13667788999999
Q ss_pred EecccC
Q 023515 87 HTASPF 92 (281)
Q Consensus 87 h~a~~~ 92 (281)
-+.|..
T Consensus 207 ~avg~~ 212 (284)
T PRK14179 207 VAIGRG 212 (284)
T ss_pred EecCcc
Confidence 988753
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.013 Score=51.90 Aligned_cols=67 Identities=21% Similarity=0.214 Sum_probs=48.6
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+.+++|+|.|. |.||+.+++.|...|.+|+++++++.+...... .++.. ..++++++++|+||
T Consensus 210 l~Gk~VlViG~-G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~--------~G~~v--------~~l~eal~~aDVVI 272 (425)
T PRK05476 210 IAGKVVVVAGY-GDVGKGCAQRLRGLGARVIVTEVDPICALQAAM--------DGFRV--------MTMEEAAELGDIFV 272 (425)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh--------cCCEe--------cCHHHHHhCCCEEE
Confidence 46899999995 999999999999999999999988754322110 11221 12466778999999
Q ss_pred Eecc
Q 023515 87 HTAS 90 (281)
Q Consensus 87 h~a~ 90 (281)
.+.+
T Consensus 273 ~aTG 276 (425)
T PRK05476 273 TATG 276 (425)
T ss_pred ECCC
Confidence 7653
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0062 Score=52.72 Aligned_cols=34 Identities=29% Similarity=0.371 Sum_probs=30.7
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDP 43 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 43 (281)
||+|.|.| +|.+|..++..|.+.|++|++++|++
T Consensus 2 ~mkI~IiG-~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 2 MARICVLG-AGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred CceEEEEC-CCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 45799998 59999999999999999999999864
|
|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0089 Score=52.58 Aligned_cols=70 Identities=13% Similarity=0.063 Sum_probs=52.1
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHH-hcCCcEeEE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI-VDGCDGVCH 87 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~Vih 87 (281)
..+++|.|. |.+|+.++++|.++|.+|++++.+.. + +. ...+..++.||.+|++.++++ +++++.||-
T Consensus 240 k~HvII~G~-g~lg~~v~~~L~~~g~~vvVId~d~~--~---~~-----~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~ 308 (393)
T PRK10537 240 KDHFIICGH-SPLAINTYLGLRQRGQAVTVIVPLGL--E---HR-----LPDDADLIPGDSSDSAVLKKAGAARARAILA 308 (393)
T ss_pred CCeEEEECC-ChHHHHHHHHHHHCCCCEEEEECchh--h---hh-----ccCCCcEEEeCCCCHHHHHhcCcccCCEEEE
Confidence 457999995 88999999999999999988885421 1 11 013577899999998877765 457888885
Q ss_pred ec
Q 023515 88 TA 89 (281)
Q Consensus 88 ~a 89 (281)
+.
T Consensus 309 ~t 310 (393)
T PRK10537 309 LR 310 (393)
T ss_pred cC
Confidence 43
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0076 Score=51.07 Aligned_cols=38 Identities=32% Similarity=0.289 Sum_probs=33.6
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcc
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPK 47 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~ 47 (281)
.++|.|.|+ |.+|..++..|+..|++|++.+++++..+
T Consensus 4 ~~~V~vIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~ 41 (295)
T PLN02545 4 IKKVGVVGA-GQMGSGIAQLAAAAGMDVWLLDSDPAALS 41 (295)
T ss_pred cCEEEEECC-CHHHHHHHHHHHhcCCeEEEEeCCHHHHH
Confidence 578999995 99999999999999999999999876543
|
|
| >cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR) | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0087 Score=50.80 Aligned_cols=74 Identities=24% Similarity=0.249 Sum_probs=49.9
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHH---HHh--cCC
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFD---SIV--DGC 82 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~---~~~--~~~ 82 (281)
++++++|+|++|.+|..+++.+...|.+|++++++.++.+.+..+ ++.. ..|..+.+... .+. +++
T Consensus 144 ~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~--------g~~~-~~~~~~~~~~~~~~~~~~~~~~ 214 (325)
T cd08253 144 AGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAELVRQA--------GADA-VFNYRAEDLADRILAATAGQGV 214 (325)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc--------CCCE-EEeCCCcCHHHHHHHHcCCCce
Confidence 478999999999999999999999999999998876544333221 1111 12333333222 222 268
Q ss_pred cEeEEecc
Q 023515 83 DGVCHTAS 90 (281)
Q Consensus 83 d~Vih~a~ 90 (281)
|.++++++
T Consensus 215 d~vi~~~~ 222 (325)
T cd08253 215 DVIIEVLA 222 (325)
T ss_pred EEEEECCc
Confidence 99999875
|
Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts |
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.016 Score=49.14 Aligned_cols=68 Identities=21% Similarity=0.165 Sum_probs=49.9
Q ss_pred hccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcE
Q 023515 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (281)
Q Consensus 5 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~ 84 (281)
..+++++|.|.| .|.+|+++++.|...|++|++.+|.......... .+++. .++.++++.+|+
T Consensus 12 ~~LkgKtVGIIG-~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~--------~G~~v--------~sl~Eaak~ADV 74 (335)
T PRK13403 12 ELLQGKTVAVIG-YGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKA--------DGFEV--------MSVSEAVRTAQV 74 (335)
T ss_pred hhhCcCEEEEEe-EcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHH--------cCCEE--------CCHHHHHhcCCE
Confidence 346799999999 6999999999999999999998875322211100 12221 257889999999
Q ss_pred eEEec
Q 023515 85 VCHTA 89 (281)
Q Consensus 85 Vih~a 89 (281)
|+.+.
T Consensus 75 V~llL 79 (335)
T PRK13403 75 VQMLL 79 (335)
T ss_pred EEEeC
Confidence 98875
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.019 Score=49.18 Aligned_cols=69 Identities=16% Similarity=0.135 Sum_probs=49.8
Q ss_pred hccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcE
Q 023515 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (281)
Q Consensus 5 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~ 84 (281)
..+++++|.|.| .|.+|+++++.|...|++|++..|+..+....... .++.. .+..++++++|+
T Consensus 13 ~~L~gktIgIIG-~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~-------~G~~~--------~s~~eaa~~ADV 76 (330)
T PRK05479 13 SLIKGKKVAIIG-YGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEA-------DGFEV--------LTVAEAAKWADV 76 (330)
T ss_pred hhhCCCEEEEEe-eHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHH-------CCCee--------CCHHHHHhcCCE
Confidence 346789999999 69999999999999999999887765443221111 12211 246778889999
Q ss_pred eEEec
Q 023515 85 VCHTA 89 (281)
Q Consensus 85 Vih~a 89 (281)
|+-+.
T Consensus 77 VvLaV 81 (330)
T PRK05479 77 IMILL 81 (330)
T ss_pred EEEcC
Confidence 98775
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0094 Score=51.25 Aligned_cols=73 Identities=29% Similarity=0.322 Sum_probs=46.7
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcC---cHHHHhc--CCc
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEG---SFDSIVD--GCD 83 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~---~~~~~~~--~~d 83 (281)
+.+|||+||+|.+|...++-+...|+.++++..+.++...+.++ ....+ .|..+.+ .+.++.. ++|
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~l--------GAd~v-i~y~~~~~~~~v~~~t~g~gvD 213 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKEL--------GADHV-INYREEDFVEQVRELTGGKGVD 213 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhc--------CCCEE-EcCCcccHHHHHHHHcCCCCce
Confidence 78999999999999999999999997766666655444443332 11111 1233322 2233332 689
Q ss_pred EeEEecc
Q 023515 84 GVCHTAS 90 (281)
Q Consensus 84 ~Vih~a~ 90 (281)
+|+...|
T Consensus 214 vv~D~vG 220 (326)
T COG0604 214 VVLDTVG 220 (326)
T ss_pred EEEECCC
Confidence 9998765
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0033 Score=56.08 Aligned_cols=71 Identities=18% Similarity=0.232 Sum_probs=51.2
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
+.+++|+|.|+ |.+|..+++.|...|. +|++++|+.++...+.... +. +..+.+++.+.+.++|+|
T Consensus 180 ~~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~-------g~-----~~~~~~~~~~~l~~aDvV 246 (423)
T PRK00045 180 LSGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTLERAEELAEEF-------GG-----EAIPLDELPEALAEADIV 246 (423)
T ss_pred ccCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHc-------CC-----cEeeHHHHHHHhccCCEE
Confidence 46789999996 9999999999999996 7999999876544332221 11 112224556677789999
Q ss_pred EEecc
Q 023515 86 CHTAS 90 (281)
Q Consensus 86 ih~a~ 90 (281)
|.+.+
T Consensus 247 I~aT~ 251 (423)
T PRK00045 247 ISSTG 251 (423)
T ss_pred EECCC
Confidence 99875
|
|
| >PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.036 Score=45.65 Aligned_cols=72 Identities=21% Similarity=0.232 Sum_probs=52.0
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--CCcEeEE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVCH 87 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~Vih 87 (281)
|+|||.|||+= |+.|++.|.++|+ |++..-.......... .......+.+-+.+.+.+.++++ +++.||.
T Consensus 1 m~ILvlgGTtE-~r~la~~L~~~g~-v~~sv~t~~g~~~~~~------~~~~~~v~~G~lg~~~~l~~~l~~~~i~~vID 72 (249)
T PF02571_consen 1 MKILVLGGTTE-GRKLAERLAEAGY-VIVSVATSYGGELLKP------ELPGLEVRVGRLGDEEGLAEFLRENGIDAVID 72 (249)
T ss_pred CEEEEEechHH-HHHHHHHHHhcCC-EEEEEEhhhhHhhhcc------ccCCceEEECCCCCHHHHHHHHHhCCCcEEEE
Confidence 68999999875 9999999999998 5554443322222111 11356778888878888999886 8999998
Q ss_pred ec
Q 023515 88 TA 89 (281)
Q Consensus 88 ~a 89 (281)
..
T Consensus 73 AT 74 (249)
T PF02571_consen 73 AT 74 (249)
T ss_pred CC
Confidence 75
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process |
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.01 Score=52.96 Aligned_cols=42 Identities=12% Similarity=0.055 Sum_probs=35.0
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhh
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTR 50 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~ 50 (281)
...|+|.|.| .|++|..++..|.+ |++|+++++++++.+.+.
T Consensus 4 ~~~mkI~vIG-lGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~ 45 (425)
T PRK15182 4 IDEVKIAIIG-LGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK 45 (425)
T ss_pred CCCCeEEEEC-cCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH
Confidence 4457899997 79999999999776 799999999987766644
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.017 Score=51.59 Aligned_cols=67 Identities=24% Similarity=0.262 Sum_probs=48.7
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+.+++++|.| .|.||+.+++.|...|.+|+++.+++........ .++.. ..++++++.+|+||
T Consensus 252 LaGKtVgVIG-~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~--------~G~~~--------~~leell~~ADIVI 314 (476)
T PTZ00075 252 IAGKTVVVCG-YGDVGKGCAQALRGFGARVVVTEIDPICALQAAM--------EGYQV--------VTLEDVVETADIFV 314 (476)
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHh--------cCcee--------ccHHHHHhcCCEEE
Confidence 5689999999 5789999999999999999999887654311000 11221 13677788999999
Q ss_pred Eecc
Q 023515 87 HTAS 90 (281)
Q Consensus 87 h~a~ 90 (281)
.+.+
T Consensus 315 ~atG 318 (476)
T PTZ00075 315 TATG 318 (476)
T ss_pred ECCC
Confidence 7653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 281 | ||||
| 2c29_D | 337 | Structure Of Dihydroflavonol Reductase From Vitis V | 2e-61 | ||
| 2rh8_A | 338 | Structure Of Apo Anthocyanidin Reductase From Vitis | 3e-51 | ||
| 2p4h_X | 322 | Crystal Structure Of Vestitone Reductase From Alfal | 4e-40 | ||
| 1y1p_A | 342 | X-Ray Structure Of Aldehyde Reductase With Nadph Le | 6e-24 | ||
| 1ujm_A | 342 | Crystal Structure Of Aldehyde Reductase 2 From Spor | 2e-22 | ||
| 3dhn_A | 227 | Crystal Structure Of The Putative Epimerase Q89z24_ | 2e-04 |
| >pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera At 1.8 A. Length = 337 | Back alignment and structure |
|
| >pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis Vinifera Length = 338 | Back alignment and structure |
|
| >pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa (Medicago Sativa L.) Length = 322 | Back alignment and structure |
|
| >pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph Length = 342 | Back alignment and structure |
|
| >pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From Sporobolomyces Salmonicolor Aku4429 Length = 342 | Back alignment and structure |
|
| >pdb|3DHN|A Chain A, Crystal Structure Of The Putative Epimerase Q89z24_bactn From Bacteroides Thetaiotaomicron. Northeast Structural Genomics Consortium Target Btr310 Length = 227 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* Length = 337 | Back alignment and structure |
|---|
Score = 442 bits (1140), Expect = e-158
Identities = 117/281 (41%), Positives = 169/281 (60%), Gaps = 8/281 (2%)
Query: 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLF 65
+ + VCVTGASG+I SWLV LL RGYTV+A+VRDP + KK +HLL L A L L+
Sbjct: 2 GSQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLW 61
Query: 66 KANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIK 125
KA+L +EGSFD + GC GV H A+P ++KDP+ E++ P ++G L ++ SCA +++
Sbjct: 62 KADLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVR 121
Query: 126 RVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL---WYPLSKTLAEDAAWKFA 182
R+V TSS V V DE+ +SD E C+ ++ Y +SKTLAE AAWK+A
Sbjct: 122 RLVFTSSAGTVNIQEH---QLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYA 178
Query: 183 KEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY--PNVTFGWVNVKDVANAH 240
KE +ID +TI P +V+GP + ++ S LS I G + + +V++ D+ NAH
Sbjct: 179 KENNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAH 238
Query: 241 IQAFEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEK 281
I FE P A GRY ++ ++RE YP + +P +
Sbjct: 239 IYLFENPKAEGRYICSSHDCIILDLAKMLREKYPEYNIPTE 279
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A Length = 338 | Back alignment and structure |
|---|
Score = 439 bits (1132), Expect = e-157
Identities = 109/293 (37%), Positives = 170/293 (58%), Gaps = 14/293 (4%)
Query: 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASE 60
M++ K CV G +G++AS LVKLLL +GY V +VRDP++ KK HLL L +
Sbjct: 1 MATQHPIGKKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGD 60
Query: 61 RLQLFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAK 120
L++F+A+L +E SF++ + GCD V H A+P + ++DP+ +++ PA++G +NV+ +C +
Sbjct: 61 -LKIFRADLTDELSFEAPIAGCDFVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTR 119
Query: 121 FPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL---WYPLSKTLAEDA 177
S+KRV+LTSS AAV +VVDE ++D E ++ YP SKTLAE A
Sbjct: 120 AKSVKRVILTSSAAAVTINQLDG-TGLVVDEKNWTDIEFLTSAKPPTWGYPASKTLAEKA 178
Query: 178 AWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT---------YPNVTF 228
AWKFA+E +IDL+T+ P ++ G L + +S +SLI G + + +
Sbjct: 179 AWKFAEENNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEFLINGMKGMQMLSGSV 238
Query: 229 GWVNVKDVANAHIQAFEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEK 281
+V+DV AHI E SA+GRY + E+ + + YP +++P
Sbjct: 239 SIAHVEDVCRAHIFVAEKESASGRYICCAANTSVPELAKFLSKRYPQYKVPTD 291
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} Length = 322 | Back alignment and structure |
|---|
Score = 430 bits (1107), Expect = e-153
Identities = 94/277 (33%), Positives = 144/277 (51%), Gaps = 8/277 (2%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVR-DPNDPKKTRHLLALDGASERLQLFKAN 68
VCVTG +G++ SW++K LL GY+V ++R DP + L L GASE+L F A+
Sbjct: 2 GRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNAD 61
Query: 69 LLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVV 128
L SF + ++GC G+ HTASP +P+ + V G L +L +C ++KR +
Sbjct: 62 LSNPDSFAAAIEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFI 121
Query: 129 LTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW---YPLSKTLAEDAAWKFAKEK 185
TSS +AV GK V+DE+ +SD ++ + + + Y +SKTLAE A +F ++
Sbjct: 122 YTSSGSAVSFNGK---DKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQN 178
Query: 186 SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ-TYPNVTFGWVNVKDVANAHIQAF 244
ID+VT+ ++G + P L S L L+ G + F V+V DVA AHI
Sbjct: 179 GIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQIGVTRFHMVHVDDVARAHIYLL 238
Query: 245 EVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEK 281
E GRY + E+ ++ YP +Q+
Sbjct: 239 ENSVPGGRYNCSPFIVPIEEMSQLLSAKYPEYQILTV 275
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A Length = 342 | Back alignment and structure |
|---|
Score = 376 bits (968), Expect = e-132
Identities = 79/299 (26%), Positives = 132/299 (44%), Gaps = 21/299 (7%)
Query: 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASE 60
+ + G +V VTGA+G++AS +V+ LL GY V+ + R + +
Sbjct: 3 IDNAVLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGR 62
Query: 61 RLQLFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAK 120
++L++G++D ++ G GV H AS + E++ PA+ GTLN L + A
Sbjct: 63 FETAVVEDMLKQGAYDEVIKGAAGVAHIASVV--SFSNKYDEVVTPAIGGTLNALRAAAA 120
Query: 121 FPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVC----------KQSELWYPLS 170
PS+KR VLTSS + L KP + +DE ++ + ++S Y S
Sbjct: 121 TPSVKRFVLTSSTVSALI-PKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAAS 179
Query: 171 KTLAEDAAWKFAKEK--SIDLVTINPAMVIGPLLQPT--LNTSAAAVLSLIKGAQT---Y 223
KT AE AAWKF E L + P IG + P +++ ++SL G +
Sbjct: 180 KTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALA 239
Query: 224 PNVTFGWVNVKDVANAHIQAFEVPSANG-RYCLVERVSHYSEIVNIIRELYPAFQLPEK 281
+V+ D+ H+ +P R ++ ++ R+LYP+ P
Sbjct: 240 LMPPQYYVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPAD 298
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Length = 227 | Back alignment and structure |
|---|
Score = 221 bits (565), Expect = 1e-72
Identities = 54/259 (20%), Positives = 99/259 (38%), Gaps = 34/259 (13%)
Query: 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFK 66
K + + GASG++ S L+ L+RG+ V A VR P + +E L++ K
Sbjct: 2 EKVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEK---------IKIENEHLKVKK 52
Query: 67 ANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKR 126
A++ + G D V +P +++ ++ D +K L +++ K + R
Sbjct: 53 ADVSSLDEVCEVCKGADAVISAFNPGWNNP-----DIYDETIKVYLTIIDGVKKAG-VNR 106
Query: 127 VVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKS 186
++ ++ P + + ++ + E P K L E KEK
Sbjct: 107 FLMVGGAGSL-----FIAPGLRLMDS-------GEVPENILPGVKALGEFYLNFLMKEKE 154
Query: 187 IDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEV 246
ID V +PA + P ++ L K V ++V+D A A I E
Sbjct: 155 IDWVFFSPAADMRPGVRTGR-------YRLGKDDMIVDIVGNSHISVEDYAAAMIDELEH 207
Query: 247 PSANGRYCLVERVSHYSEI 265
P + + + H+
Sbjct: 208 PKHHQERFTIGYLEHHHHH 226
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342 | Back alignment and structure |
|---|
Score = 217 bits (554), Expect = 2e-69
Identities = 48/262 (18%), Positives = 95/262 (36%), Gaps = 20/262 (7%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
V GA+G + + + + G+ + R + ++ +L + A +L+
Sbjct: 16 YAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYL--------EPECRVAEMLD 67
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131
+ + G DGV +A + + Q E + A+ T +C + + R++
Sbjct: 68 HAGLERALRGLDGVIFSAGYYPSRPRRWQ-EEVASALGQTNPFYAACLQ-ARVPRILYVG 125
Query: 132 SMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVT 191
S A+ + E F D +S Y L K ++ A + A+ + +V
Sbjct: 126 SAYAM----PRHPQGLPGHEGLFYDSLPSGKS--SYVLCKWALDEQAREQARNG-LPVVI 178
Query: 192 INPAMVIGPLLQPTLNTSAAAVLSLIKGAQ-TYPNVTFGWVNVKDVANAHIQAFEVPSAN 250
P MV+G L T+ + ++ G Y ++ + + A E
Sbjct: 179 GIPGMVLGEL--DIGPTTGRVITAIGNGEMTHYVAGQRNVIDAAEAGRGLLMALERGRIG 236
Query: 251 GRYCLVERVSHYSEIVNIIREL 272
RY L +++ I EL
Sbjct: 237 ERYLLTGHNLEMADLTRRIAEL 258
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* Length = 317 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 3e-20
Identities = 51/284 (17%), Positives = 105/284 (36%), Gaps = 43/284 (15%)
Query: 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALD---GASERLQLFKA 67
++ VTG+SG I + LV L + +++A D + ++
Sbjct: 1 MILVTGSSGQIGTELVPYLAEKYGKK--------------NVIASDIVQRDTGGIKFITL 46
Query: 68 NLLEEGSFDSIVD--GCDGVCHTASPFYHDA-KDPQVELLDPAVKGTLNVLNSCAKFPSI 124
++ D V+ D + H A KDP + + GT N+L + + +
Sbjct: 47 DVSNRDEIDRAVEKYSIDAIFHLAGILSAKGEKDPALA-YKVNMNGTYNILEAAKQH-RV 104
Query: 125 KRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE 184
++VV+ S++ P TP V + P ++ + ++K AE + ++
Sbjct: 105 EKVVIPSTIGVF----GPETPKNKVPSITITRP----RT--MFGVTKIAAELLGQYYYEK 154
Query: 185 KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG-------WVNVKDVA 237
+D+ ++ +I +PT T+ AV + + + + D
Sbjct: 155 FGLDVRSLRYPGIISYKAEPTAGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYMPDAL 214
Query: 238 NAHIQAFEVPSANGRYCLVERVSHYS----EIVNIIRELYPAFQ 277
A + +E V+ Y+ E+ + I+E P F+
Sbjct: 215 KALVDLYEADRDKLVLRNGYNVTAYTFTPSELYSKIKERIPEFE 258
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Length = 267 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 2e-19
Identities = 33/193 (17%), Positives = 68/193 (35%), Gaps = 25/193 (12%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
A K + VTGA+G + + + L ++ + P LD A + +
Sbjct: 2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSP-----------LDPAGPNEECVQC 50
Query: 68 NLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRV 127
+L + + +++V GCDG+ H + P ++L + G N+ + R+
Sbjct: 51 DLADANAVNAMVAGCDGIVHLGG---ISVEKPFEQILQGNIIGLYNLYEAARAH-GQPRI 106
Query: 128 VLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSI 187
V SS + + + + P+ Y +SK E+ A + +
Sbjct: 107 VFASSNHTIGYYPQ----TERLGPDVPARPDGL------YGVSKCFGENLARMYFDKFGQ 156
Query: 188 DLVTINPAMVIGP 200
+ +
Sbjct: 157 ETALVRIGSCTPE 169
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} Length = 221 | Back alignment and structure |
|---|
Score = 83.9 bits (207), Expect = 2e-19
Identities = 29/254 (11%), Positives = 88/254 (34%), Gaps = 38/254 (14%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ + GA+G S +++ +RG+ V A VR+ + + + + + ++ +
Sbjct: 3 IGIIGATGRAGSRILEEAKNRGHEVTAIVRNAG---------KITQTHKDINILQKDIFD 53
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131
D + + V +A + V ++++ R+++
Sbjct: 54 LTLSD--LSDQNVVVDAYGISPDEA--------EKHVTSLDHLIS-VLNGTVSPRLLVVG 102
Query: 132 SMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVT 191
A++ + +++ + +YP ++ A+ + +
Sbjct: 103 GAASL---QIDEDGNTLLESKGLREAP-------YYPTARAQAKQLEHLKSHQAEFSWTY 152
Query: 192 INPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPSANG 251
I+P+ + P + K + + +++++D A A + E P+
Sbjct: 153 ISPSAMFEPG-------ERTGDYQIGKDHLLFGSDGNSFISMEDYAIAVLDEIERPNHLN 205
Query: 252 -RYCLVERVSHYSE 264
+ + ++ H+
Sbjct: 206 EHFTVAGKLEHHHH 219
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} Length = 267 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 5e-19
Identities = 49/227 (21%), Positives = 79/227 (34%), Gaps = 34/227 (14%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ VTGA+G + S + L + + V+ S + L A ++ +L +
Sbjct: 5 LLVTGAAGGVGSAIRPHLGTLAHEVRLSDI-----------VDLGAAEAHEEIVACDLAD 53
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131
+ +V CDG+ H + P ++L + G N+ + R+V S
Sbjct: 54 AQAVHDLVKDCDGIIHLGG---VSVERPWNDILQANIIGAYNLYEAARNL-GKPRIVFAS 109
Query: 132 SMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVT 191
S + PRT +D P S Y LSK ED A + + I+ +
Sbjct: 110 SNHTIGYY--PRTT--RIDTEVPRRP----DSL--YGLSKCFGEDLASLYYHKFDIETLN 159
Query: 192 INPAMVIGPLLQPTLNTSAAAVLS------LIKGAQTYPNVTFGWVN 232
I P A LS L+K A P + V
Sbjct: 160 IRIGSCFPK---PKDARMMATWLSVDDFMRLMKRAFVAPKLGCTVVY 203
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* Length = 364 | Back alignment and structure |
|---|
Score = 79.0 bits (194), Expect = 4e-17
Identities = 43/292 (14%), Positives = 78/292 (26%), Gaps = 42/292 (14%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGY-----TVKASVRDPNDPKKTRHLLALDGASERLQL 64
V + G +G I + L ++L V R +
Sbjct: 2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPA---------WHEDNPINY 52
Query: 65 FKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKF-PS 123
+ ++ + + + V H + + Q E + K NVL++ P+
Sbjct: 53 VQCDISDPDDSQAKLSPLTDVTHVFYVTWANRSTEQ-ENCEANSKMFRNVLDAVIPNCPN 111
Query: 124 IKRVVLTSSMAA----VLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAW 179
+K + L + + GK + D E Y ED
Sbjct: 112 LKHISLQTGRKHYMGPFESYGKIESHDPPYTEDLPRLK---------YMNFYYDLEDIML 162
Query: 180 K-FAKEKSIDLVTINPAMVIGPLLQPTLNTSA-----AAVLSLIKGAQTYPNVTFGWVNV 233
+ K++ + P + G +N AA+ + W
Sbjct: 163 EEVEKKEGLTWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFTGCKAAWDGY 222
Query: 234 KDV------ANAHIQAFEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLP 279
D A HI A P A V + + + L F +
Sbjct: 223 SDCSDADLIAEHHIWAAVDPYAKNEAFNVSNGDVFK-WKHFWKVLAEQFGVE 273
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Length = 219 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 2e-16
Identities = 31/242 (12%), Positives = 76/242 (31%), Gaps = 52/242 (21%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL-L 70
+ + G++G + L+K L + Y + A R + + ++ ++
Sbjct: 3 IFIVGSTGRVGKSLLKSLSTTDYQIYAGARKV------EQVPQYNN----VKAVHFDVDW 52
Query: 71 EEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLT 130
+ G D + + + K +D + G + ++ + K +KR +L
Sbjct: 53 TPEEMAKQLHGMDAIINVSGS---GGKSL--LKVD--LYGAVKLMQAAEK-AEVKRFILL 104
Query: 131 SSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLV 190
S++ + +P + Y ++K A+ KE ++D
Sbjct: 105 STIFS----LQPEKWIGAGFDALKD-----------YYIAKHFADLYL---TKETNLDYT 146
Query: 191 TINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPSAN 250
I P + ++ + + DVA+ + +
Sbjct: 147 IIQPGALTEEEATGLIDINDE---------------VSASNTIGDVADTIKELVMTDHSI 191
Query: 251 GR 252
G+
Sbjct: 192 GK 193
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* Length = 377 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 3e-16
Identities = 54/278 (19%), Positives = 87/278 (31%), Gaps = 57/278 (20%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALD----------G 57
A V V G +G++ S LVK LL G V +D
Sbjct: 31 ANTNVMVVGGAGFVGSNLVKRLLELGV---NQVH------------VVDNLLSAEKINVP 75
Query: 58 ASERLQLFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPA------VKGT 111
++ + ++ ++ S+ D D V H A+ Q + DP T
Sbjct: 76 DHPAVRFSETSITDDALLASLQDEYDYVFHLATYH-----GNQSSIHDPLADHENNTLTT 130
Query: 112 LNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSK 171
L + F +K+VV +++ ++ + D E S Y +SK
Sbjct: 131 LKLYERLKHFKRLKKVVYSAAGCSI---AEKTFDDAKATEETDIVSLHNNDS--PYSMSK 185
Query: 172 TLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQP-------TLNTSAAAVLSL-IKGAQTY 223
E + + K+ + V V GP T T V I A
Sbjct: 186 IFGEFYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKG 245
Query: 224 PNVT-FG-------WVNVKDVANAHIQAFEVPSANGRY 253
+ ++ V+DVAN I + G Y
Sbjct: 246 MPLPLENGGVATRDFIFVEDVANGLIACAADGTPGGVY 283
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* Length = 206 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 9e-16
Identities = 30/241 (12%), Positives = 60/241 (24%), Gaps = 49/241 (20%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ + GA+G + + GY V VRD + + ++L+
Sbjct: 6 IAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSR--------LPSEGPRPAHVVVGDVLQ 57
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131
D V G D V + +G N++ + + +VV +
Sbjct: 58 AADVDKTVAGQDAVIVLLGT------RNDLSPTTVMSEGARNIVAAMKAHG-VDKVVACT 110
Query: 132 SMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVT 191
S + DP +E + V
Sbjct: 111 SAFLLW------------------DPTKVPPRLQAVTDDHIRMHKV----LRESGLKYVA 148
Query: 192 INPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPSANG 251
+ P + T A V ++ D+ + ++ +G
Sbjct: 149 VMPPH-----IGDQPLTGAYTVT-------LDGRGPSRVISKHDLGHFMLRCLTTDEYDG 196
Query: 252 R 252
Sbjct: 197 H 197
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* Length = 253 | Back alignment and structure |
|---|
Score = 73.7 bits (181), Expect = 1e-15
Identities = 43/259 (16%), Positives = 70/259 (27%), Gaps = 55/259 (21%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
V VTGASG + K L + K VR + + +F
Sbjct: 5 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVR---SAQGKEKIGG------EADVFIG 55
Query: 68 NLLEEGSFDSIVDGCDGV--CHTASPFYHDAKDPQVELLDPAVK------------GTLN 113
++ + S + G D + +A P DP + G N
Sbjct: 56 DITDADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKN 115
Query: 114 VLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTL 173
++ AK +K +V+ SM PD +++ + + K
Sbjct: 116 QID-AAKVAGVKHIVVVGSMGG-------TNPDHPLNKLGNGN----------ILVWKRK 157
Query: 174 AEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNV 233
AE + I ++ L+ V
Sbjct: 158 AEQY----LADSGTPYTIIRAGGLLDKE--------GGVRELLVGKDDELLQTDTKTVPR 205
Query: 234 KDVANAHIQAFEVPSANGR 252
DVA IQA A +
Sbjct: 206 ADVAEVCIQALLFEEAKNK 224
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Length = 236 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 2e-15
Identities = 52/242 (21%), Positives = 85/242 (35%), Gaps = 50/242 (20%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
V V GA+G +A +L+ L ++G+ A VR+ + R A D + ANL E
Sbjct: 24 VLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASD-------IVVANLEE 76
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131
F D V A H D L+D + G + + K IKR ++ S
Sbjct: 77 --DFSHAFASIDAVVFAAGSGPHTGADK-TILID--LWGAIKTIQEAEK-RGIKRFIMVS 130
Query: 132 SMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVT 191
S+ DP+ + Y ++K LA+D K S+D T
Sbjct: 131 SVGT-------------------VDPDQGPMNMRHYLVAKRLADDE----LKRSSLD-YT 166
Query: 192 INPAMVIGPLLQP-TLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPSAN 250
I ++P L+ + + + + DVA + +
Sbjct: 167 I---------VRPGPLSNEESTGKVTVSPHFSEIT---RSITRHDVAKVIAELVDQQHTI 214
Query: 251 GR 252
G+
Sbjct: 215 GK 216
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} Length = 224 | Back alignment and structure |
|---|
Score = 72.4 bits (177), Expect = 2e-15
Identities = 35/245 (14%), Positives = 67/245 (27%), Gaps = 43/245 (17%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ V GA+G S +V RG+ V A VRDP E L L +A
Sbjct: 3 IAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEA---- 58
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131
+D D V S + + + ++++ V +
Sbjct: 59 ------DLDSVDAVVDALSVPWGSGRGYL------HLDFATHLVSLLRN-SDTLAVFILG 105
Query: 132 SMAAVLNTGK----PRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSI 187
S + + P+ + W+ ++
Sbjct: 106 SASLAMPGADHPMILDFPESAASQPWYDGALYQYY--------------EYQFLQMNANV 151
Query: 188 DLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP 247
+ + I+P+ + +L G + ++A A + E P
Sbjct: 152 NWIGISPSEAFPSGPATSYVAGKDTLLVGEDGQ--------SHITTGNMALAILDQLEHP 203
Query: 248 SANGR 252
+A
Sbjct: 204 TAIRD 208
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} Length = 312 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 3e-14
Identities = 53/291 (18%), Positives = 89/291 (30%), Gaps = 56/291 (19%)
Query: 12 VCVTGASGYIASWLVKLLLSR-GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLL 70
+ + GA G I + L + L G V + K ++ N L
Sbjct: 5 ILIIGACGQIGTELTQKLRKLYGTEN---VIASDIRKLNTDVV------NSGPFEVVNAL 55
Query: 71 EEGSFDSIVD--GCDGVCHTAS----------PFYHDAKDPQVELLDPAVKGTLNVLNSC 118
+ + +V+ + A+ F D + +VLN
Sbjct: 56 DFNQIEHLVEVHKITDIYLMAALLSATAEKNPAFAWDLN----------MNSLFHVLNLA 105
Query: 119 AKFPSIKRVVLTSSMAAV-LNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDA 177
IK++ SS+A T K TP + E P + Y +SK E
Sbjct: 106 KAK-KIKKIFWPSSIAVFGPTTPKENTPQYTIME-----P----ST--VYGISKQAGERW 153
Query: 178 AWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG-------W 230
+ +D+ +I +I P T+ AV K F
Sbjct: 154 CEYYHNIYGVDVRSIRYPGLISWSTPPGGGTTDYAVDIFYKAIADKKYECFLSSETKMPM 213
Query: 231 VNVKDVANAHIQAFEVPSANGRYCLVERVSHYS----EIVNIIRELYPAFQ 277
+ + D +A I + P + ++ S EI N I++ P F
Sbjct: 214 MYMDDAIDATINIMKAPVEKIKIHSSYNLAAMSFTPTEIANEIKKHIPEFT 264
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Length = 311 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 2e-13
Identities = 37/262 (14%), Positives = 87/262 (33%), Gaps = 64/262 (24%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ VTG +G++ ++V+ + + G T + + A + ++
Sbjct: 5 IAVTGGTGFLGQYVVESIKNDGNTPI--ILT---------RSIGNKAINDYEYRVSDYTL 53
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDA--------KDPQVELLDPAVKGTLNVLNSCAKFPS 123
E + ++ D V H A A + T N+ ++C + +
Sbjct: 54 EDLIN-QLNDVDAVVHLA------ATRGSQGKISEFHDN-----EILTQNLYDACYEN-N 100
Query: 124 IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAK 183
I +V S+ + + +E P++ Y +SK E +++
Sbjct: 101 ISNIVYAST-ISAY--SDE--TSLPWNEKELPLPDLM------YGVSKLACEHIGNIYSR 149
Query: 184 EKSIDLVTINPAMVIGPLLQPTLNTSAAAVLS-----LIKGAQTYPNVTFG-------WV 231
+K + + + A + G + +++ G Q + ++
Sbjct: 150 KKGLCIKNLRFAHLYGFNEKN------NYMINRFFRQAFHGEQ--LTL-HANSVAKREFL 200
Query: 232 NVKDVANAHIQAFEVPSANGRY 253
KD A + I A + +G +
Sbjct: 201 YAKDAAKSVIYALKQEKVSGTF 222
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* Length = 352 | Back alignment and structure |
|---|
Score = 67.9 bits (166), Expect = 3e-13
Identities = 24/146 (16%), Positives = 51/146 (34%), Gaps = 21/146 (14%)
Query: 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASE 60
M+ K + V GA+G + L+++ + G+ V+A V L A+
Sbjct: 1 MAQ----QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGL-IAEELQAIPNV-- 53
Query: 61 RLQLFKANLL-EEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCA 119
LF+ LL D++ +G + + + ++ ++
Sbjct: 54 --TLFQGPLLNNVPLMDTLFEGAHLA-FINTTSQAGDEIAIGK----------DLADAAK 100
Query: 120 KFPSIKRVVLTSSMAAVLNTGKPRTP 145
+ +I+ + +S L P P
Sbjct: 101 RAGTIQHYIYSSMPDHSLYGPWPAVP 126
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Length = 478 | Back alignment and structure |
|---|
Score = 67.6 bits (165), Expect = 5e-13
Identities = 42/275 (15%), Positives = 82/275 (29%), Gaps = 46/275 (16%)
Query: 5 AAAAGKVVCVTGASGYIASWLVKLLLSR---GYTVKASVRDPNDPK-KTRHLLAL----- 55
+ + V +TGA+G++ +LV LL R + VR +D + R
Sbjct: 69 PSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDP 128
Query: 56 -------DGASERLQLFKANL------LEEGSFDSIVDGCDGVCHTASP--FYHDAKDPQ 100
+ A++RL++ + L++ + + + D + +A+ + P
Sbjct: 129 ELLRHFKELAADRLEVVAGDKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNAF-----PY 183
Query: 101 VELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVC 160
EL P V GT ++ +K S+ + V
Sbjct: 184 HELFGPNVAGTAELIRIALTTK-LKPFTYVSTADVGAAIEPSAFTEDADIRVISPTRTVD 242
Query: 161 KQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA 220
Y SK E + ++ + M++ + V ++
Sbjct: 243 GGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQLNMSDWVTRMVLSL 302
Query: 221 QT---YPNV-------------TFGWVNVKDVANA 239
P F + V VA A
Sbjct: 303 MATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEA 337
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* Length = 352 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 7e-13
Identities = 47/270 (17%), Positives = 89/270 (32%), Gaps = 61/270 (22%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVK-----ASVRDPNDPKKTRHLLALDGASERLQL 64
KV +TG +G+I S L++ LL V A+ N L + +
Sbjct: 28 KVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRN--LDEVRSLVSEKQWSNFKF 85
Query: 65 FKANLLEEGSFDSIVDGCDGVCHTA----------SPF-YHDAKDPQVELLDPAVKGTLN 113
+ ++ ++ G D V H A P + + G LN
Sbjct: 86 IQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATN----------IDGFLN 135
Query: 114 VLNSCAKFPSIKRVVLTSSMAAV--LNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSK 171
+L + ++ +S ++ + G P+ D + P S Y ++K
Sbjct: 136 MLIAARDAK-VQSFTYAAS-SSTYGDHPGLPKVEDTIG------KP----LSP--YAVTK 181
Query: 172 TLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLS-----LIKGAQTYPNV 226
+ E A F++ + + V G P N + AAV+ +I+G
Sbjct: 182 YVNELYADVFSRCYGFSTIGLRYFNVFGRRQDP--NGAYAAVIPKWTSSMIQGD---DVY 236
Query: 227 TFG-------WVNVKDVANAHIQAFEVPSA 249
G + +++ A++ A
Sbjct: 237 INGDGETSRDFCYIENTVQANLLAATAGLD 266
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} PDB: 3icp_A* 3aw9_A* Length = 312 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 1e-12
Identities = 59/282 (20%), Positives = 99/282 (35%), Gaps = 55/282 (19%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ VTG +G+I S LV L+ GY V V D N + ++ +L +L +
Sbjct: 3 IVVTGGAGFIGSHLVDKLVELGYEV--VVVD-N--LSSGRREFVN---PSAELHVRDLKD 54
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPA------VKGTLNVLNSCAKFPSIK 125
I D V H A+ + ++ +P V T NVL + ++
Sbjct: 55 YSWGAGI--KGDVVFHFAAN-----PEVRLSTTEPIVHFNENVVATFNVLEWARQT-GVR 106
Query: 126 RVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK 185
VV SS + V G + E P Y +K E +A+
Sbjct: 107 TVVFASS-STVY--GDA--DVIPTPEEEPYKPISV------YGAAKAAGEVMCATYARLF 155
Query: 186 SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT--FG-------WVNVKDV 236
+ + + A V+GP L+ + I + PNV G ++ V+D
Sbjct: 156 GVRCLAVRYANVVGPRLRH------GVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDA 209
Query: 237 ANAHIQAFEVPSANGRYCLV------ERVSHYSEIVNIIREL 272
A + A++ L + V +I I+ E+
Sbjct: 210 VEATLAAWKKFEEMDAPFLALNVGNVDAVR-VLDIAQIVAEV 250
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* Length = 404 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 1e-12
Identities = 60/337 (17%), Positives = 102/337 (30%), Gaps = 68/337 (20%)
Query: 2 SSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTV----KASVRDPNDPKKTRHLLALDG 57
S G V V G GY L + Y V R + L +
Sbjct: 4 SHHHHHHGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIAS 63
Query: 58 ASERLQLFKANLLEEGSFDSIVDGCD--------------GVCHTA-------SPFYHDA 96
+R+ +KA + + D CD V H S D
Sbjct: 64 IHDRISRWKALTGKSIEL-YVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYS--MIDR 120
Query: 97 KDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSD 156
V V GTLNVL + +F +V +M TP++ ++E + +
Sbjct: 121 SRA-VYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEY------GTPNIDIEEGYITI 173
Query: 157 PEVCKQSEL--------WYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL-- 206
+ L +Y LSK K I +N +V G T
Sbjct: 174 THNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMH 233
Query: 207 ---------NTSAAAVLSLI--KGAQTYPNVTFG-------WVNVKDVANAHIQAFEVPS 248
+ L+ + A +P +G +++++D A P+
Sbjct: 234 EELRNRLDYDAVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPA 293
Query: 249 ANGRYCLV----ERVSHYSEIVNIIRELYPAFQLPEK 281
G + + E+ S +E+ +++ + L K
Sbjct: 294 KAGEFRVFNQFTEQFS-VNELASLVTKAGSKLGLDVK 329
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} Length = 313 | Back alignment and structure |
|---|
Score = 64.8 bits (159), Expect = 3e-12
Identities = 52/282 (18%), Positives = 94/282 (33%), Gaps = 55/282 (19%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69
++ VTG +G+I S +V L + V D N + + ++ E +L KA+L
Sbjct: 2 SLIVVTGGAGFIGSHVVDKLS-ESNEIV--VID-N--LSSGNEEFVN---EAARLVKADL 52
Query: 70 LEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVE--LLDPA------VKGTLNVLNSCAKF 121
+ + G + V H A+ +P V +P V T +L + K
Sbjct: 53 AAD-DIKDYLKGAEEVWHIAA-------NPDVRIGAENPDEIYRNNVLATYRLLEAMRKA 104
Query: 122 PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKF 181
+ R+V TS+ + V G+ + E + + P S Y SK E +
Sbjct: 105 -GVSRIVFTST-STVY--GEA--KVIPTPEDYPTHP----ISL--YGASKLACEALIESY 152
Query: 182 AKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT--FG-------WVN 232
+ A VIG ++ + I + P G ++
Sbjct: 153 CHTFDMQAWIYRFANVIGR------RSTHGVIYDFIMKLKRNPEELEILGNGEQNKSYIY 206
Query: 233 VKDVANAHIQAFEVPSANGRYCLVERVSHYS--EIVNIIREL 272
+ D +A + + + I I+ E
Sbjct: 207 ISDCVDAMLFGLRGDERVNIFNIGSEDQ-IKVKRIAEIVCEE 247
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Length = 342 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 6e-12
Identities = 45/295 (15%), Positives = 85/295 (28%), Gaps = 52/295 (17%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPN--DPKKTRHLLALDGASERLQLFKANL 69
+ + GA+G + L + L+ G V D + G + A+L
Sbjct: 17 IAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGFSG---AVDARAADL 73
Query: 70 LEEGSFDSIVD-GCDGVCHTAS----------PFYHDAKDPQVELLDPAVKGTLNVLNSC 118
G + +V+ D + H A+ + + GT + ++
Sbjct: 74 SAPGEAEKLVEARPDVIFHLAAIVSGEAELDFDKGYRIN----------LDGTRYLFDAI 123
Query: 119 ----AKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLA 174
K RVV TSS AV G P P + + + + P Y K +
Sbjct: 124 RIANGKDGYKPRVVFTSS-IAVF--GAP-LPY-PIPDEFHTTPLTS------YGTQKAIC 172
Query: 175 EDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG----- 229
E +++ D + I + +P S L + V
Sbjct: 173 ELLLSDYSRRGFFDGIGIRLPTICIRPGKPNAAASGFFSNILREPLVGQEAVLPVPESIR 232
Query: 230 --WVNVKDVANAHIQAFEVPSAN--GRYCLVERVSHYS--EIVNIIRELYPAFQL 278
+ + I + R L + E + +R++ +
Sbjct: 233 HWHASPRSAVGFLIHGAMIDVEKVGPRRNLSMPGLSATVGEQIEALRKVAGEKAV 287
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* Length = 311 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 6e-12
Identities = 57/267 (21%), Positives = 100/267 (37%), Gaps = 62/267 (23%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKA----SVRDPNDPKKTRHLLALDGASERLQLFKA 67
V VTG +G+I S +V+ LL+RG V + T + + + F+
Sbjct: 3 VLVTGGAGFIGSHIVEDLLARGLEVAVLDNLA---------TGKRENVP---KGVPFFRV 50
Query: 68 NLLEEGSFDSIVDGC--DGVCHTASPFYHDAKDPQVE--LLDPA------VKGTLNVLNS 117
+L ++ + V H A A+ V+ + DP + G LN+L +
Sbjct: 51 DLRDKEGVERAFREFRPTHVSHQA------AQ-ASVKVSVEDPVLDFEVNLLGGLNLLEA 103
Query: 118 CAKFPSIKRVVLTSSMAAVLNTGKPRTPDVV-VDETWFSDPEVCKQSELWYPLSKTLAED 176
C ++ ++++V S+ A+ G+ P+ +ETW P+ Y SK E
Sbjct: 104 CRQY-GVEKLVFASTGGAIY--GE--VPEGERAEETWPPRPKSP------YAASKAAFEH 152
Query: 177 AAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLI--KGAQTYPNVTFGW---- 230
+ + + V++ V GP P A V+++ + + P +
Sbjct: 153 YLSVYGQSYGLKWVSLRYGNVYGPRQDP---HGEAGVVAIFAERVLKGLPVTLYARKTPG 209
Query: 231 --------VNVKDVANAHIQAFEVPSA 249
V V DVA AH A
Sbjct: 210 DEGCVRDYVYVGDVAEAHALALFSLEG 236
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* Length = 351 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 6e-12
Identities = 25/158 (15%), Positives = 59/158 (37%), Gaps = 32/158 (20%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGYTVK-----ASVRDPNDPKKTRHLLALDGASERLQ 63
K +TG +G+I S L++ LL V ++ N + + L++ + R
Sbjct: 25 PKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYN-LDEVKTLVSTE-QWSRFC 82
Query: 64 LFKANLLEEGSFDSIVDGCDGVCHTA----------SPF-YHDAKDPQVELLDPAVKGTL 112
+ ++ + + + ++ G D V H A P + + G L
Sbjct: 83 FIEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATN----------ITGFL 132
Query: 113 NVLNSCAKFPSIKRVVLTSSMAAV--LNTGKPRTPDVV 148
N+L++ ++ +S ++ + P+ + +
Sbjct: 133 NILHAAKNAQ-VQSFTYAAS-SSTYGDHPALPKVEENI 168
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} Length = 236 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 9e-12
Identities = 34/242 (14%), Positives = 62/242 (25%), Gaps = 52/242 (21%)
Query: 12 VCVTGASGYIASWLVKLLLSR-GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLL 70
V + GA G IA ++ L + R P Q+ ++L
Sbjct: 26 VLILGAGGQIARHVINQLADKQTIKQTLFARQPAK--------IHKPYPTNSQIIMGDVL 77
Query: 71 EEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLT 130
+ + G D V + + +V+ + K +KR++
Sbjct: 78 NHAALKQAMQGQDIVYANLTG-------------EDLDIQANSVIAA-MKACDVKRLIFV 123
Query: 131 SSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLV 190
S+ + DE E A DA + ++
Sbjct: 124 LSLG-------------IYDEVPGKFVEWNNAVIGEPLKPFRRAADAI----EASGLEYT 166
Query: 191 TINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPSAN 250
+ PA L L + + V+ K VA + P +
Sbjct: 167 ILRPAW---------LTDEDIIDYELTSRNEPFKG---TIVSRKSVAALITDIIDKPEKH 214
Query: 251 GR 252
Sbjct: 215 IG 216
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A Length = 369 | Back alignment and structure |
|---|
Score = 61.9 bits (150), Expect = 4e-11
Identities = 44/267 (16%), Positives = 79/267 (29%), Gaps = 62/267 (23%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ +TGA G++ L L S V ++
Sbjct: 3 IVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTKEEE----------------------- 39
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131
+S + D + H A + + + E V +VL+ + ++L+S
Sbjct: 40 ---LESALLKADFIVHLAGV--NRPEHDK-EFSLGNVSYLDHVLDILTRNTKKPAILLSS 93
Query: 132 SMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVT 191
S+ A P Y SK E ++A+E +
Sbjct: 94 SIQA-----TQDNP---------------------YGESKLQGEQLLREYAEEYGNTVYI 127
Query: 192 INPAMVIGPLLQPTLNTSAAAVLSLIKGAQT----YPNVTFGWVNVKDVANAHIQAFEV- 246
+ G +P N+ A I + NV V D+ +A E
Sbjct: 128 YRWPNLFGKWCKPNYNSVIATFCYKIARNEEIQVNDRNVELTLNYVDDIVAEIKRAIEGT 187
Query: 247 PSANGRYCLVERVSHYS--EIVNIIRE 271
P+ V V + EIV+++ +
Sbjct: 188 PTIENGVPTVPNVFKVTLGEIVDLLYK 214
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A Length = 242 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 4e-11
Identities = 41/266 (15%), Positives = 65/266 (24%), Gaps = 52/266 (19%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
K V + GASG L+K +L +G V R R L + A + +
Sbjct: 19 KSVFILGASGETGRVLLKEILEQGLFSKVTLIGR--------RKLTFDEEAYKNVNQEVV 70
Query: 68 NLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRV 127
+ + + S G D A +D L K
Sbjct: 71 DFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVD--RDYVLKSAELAKAGG-CKHF 127
Query: 128 VLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSI 187
L SS A K S Y K E +E
Sbjct: 128 NLLSSKGA------------------------DKSSNFLYLQVKGEVEAK----VEELKF 159
Query: 188 DLVTI-NPAMVIGPLLQPTLNTSAAAVLS-LIKGAQTYPNVTFGWVNVKDVANAHIQAFE 245
D ++ P +++ + + + V V V A +
Sbjct: 160 DRYSVFRPGVLLCDRQESRPGEWLVRKFFGSLPD----SWASGHSVPVVTVVRAMLNNVV 215
Query: 246 VPSANGRYCLVERVSHYSEIVNIIRE 271
P L I ++ +
Sbjct: 216 RPRDKQMELL-----ENKAIHDLGKA 236
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* Length = 379 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 1e-10
Identities = 28/128 (21%), Positives = 49/128 (38%), Gaps = 21/128 (16%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ +TGA G+IAS + + L G+ V AS D KK H+ E +L
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIAS-----DWKKNEHMTEDMFCDE---FHLVDLRV 83
Query: 72 EGSFDSIVDGCDGVCHTASP-------FYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSI 124
+ + +G D V + A+ + + ++ + N++ + I
Sbjct: 84 MENCLKVTEGVDHVFNLAADMGGMGFIQSNHS-----VIMYNNTMISFNMIEAARIN-GI 137
Query: 125 KRVVLTSS 132
KR SS
Sbjct: 138 KRFFYASS 145
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} Length = 321 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 2e-10
Identities = 46/299 (15%), Positives = 78/299 (26%), Gaps = 99/299 (33%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALD----GASERLQLFKA 67
+ +TG +G+I L + L++ G V LD +
Sbjct: 10 ILITGGAGFIGGHLARALVASGEEV----------------TVLDDLRVPPMIPPE-GTG 52
Query: 68 NLLEEGSFDSI---VDGCDGVCHTASPFYHDAKDPQVELLDPA-----VKGTLNVLNSCA 119
LE+ + + V H AS K P V ++L C
Sbjct: 53 KFLEKPVLELEERDLSDVRLVYHLASH-----KSVPRSFKQPLDYLDNVDSGRHLLALCT 107
Query: 120 KFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAW 179
+ +VV+ S+ V G+ T + E P Y SK E A
Sbjct: 108 SV-GVPKVVVGST-CEVY--GQADT--LPTPEDSPLSPRSP------YAASKVGLEMVAG 155
Query: 180 KFAKEKSIDLVTI-----------NPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228
+ V I P ++ P L +L+
Sbjct: 156 AHQRASVAPEVGIVRFFNVYGPGERPDALV-----PRL------CANLLTRN---ELPVE 201
Query: 229 G-------WVNVKDVANAHIQAFEVPSANGRYCLVERVSHYSEIVNI-------IRELY 273
G + + DV + + P +VN + ++
Sbjct: 202 GDGEQRRDFTYITDVVDKLVALANRP--------------LPSVVNFGSGQSLSVNDVI 246
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} Length = 372 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 3e-10
Identities = 37/218 (16%), Positives = 69/218 (31%), Gaps = 47/218 (21%)
Query: 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQL 64
+ K V + G +G+I L K +L + L+ ER+
Sbjct: 20 GSMKAKKVLILGVNGFIGHHLSKRILETTDWE--VFGMDMQTDRLGDLV----KHERMHF 73
Query: 65 FKANL-LEEGSFDSIVDGCDGVCHTASPF--YHDAKDPQVELLDPAVKGTLNVLNSCAKF 121
F+ ++ + + + V CD + + K P + + + + L ++ S K+
Sbjct: 74 FEGDITINKEWVEYHVKKCDVILPLVAIATPATYVKQP-LRVFELDFEANLPIVRSAVKY 132
Query: 122 PSIKRVVLTSSMAAVLNT----GKPRTPDVVVDETWFSDPEVCKQSE--LW--------- 166
K +V S T G +D + + +
Sbjct: 133 G--KHLVFPS-------TSEVYGMC------------ADEQFDPDASALTYGPINKPRWI 171
Query: 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQP 204
Y SK L + W + E ++ P IGP L
Sbjct: 172 YACSKQLMDRVIWGYGMEG-LNFTLFRPFNWIGPGLDS 208
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} Length = 333 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 3e-10
Identities = 32/129 (24%), Positives = 48/129 (37%), Gaps = 16/129 (12%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
V +TG G I S + +LLL RG V D T L L + ++ +
Sbjct: 24 VFITGICGQIGSHIAELLLERGDKVVGI-----DNFATGRREHLKD-HPNLTFVEGSIAD 77
Query: 72 EGSFDSIVDGC--DGVCHTASPFYHDAKDPQVELLDPA--VKGTLNVLNSCAKFPSIKRV 127
+ ++ D V HTA+ KDP D G NV+ + K ++ R
Sbjct: 78 HALVNQLIGDLQPDAVVHTAA----SYKDPDDWYNDTLTNCVGGSNVVQAAKKN-NVGRF 132
Query: 128 VLTSSMAAV 136
V + A
Sbjct: 133 VYFQT-ALC 140
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Length = 330 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 1e-09
Identities = 45/267 (16%), Positives = 92/267 (34%), Gaps = 69/267 (25%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTV----------KASVRDPNDPKKTRHLLALDGASER 61
+ +TG +G + S L++ L +G+ + + +
Sbjct: 23 ILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPP----------------VAG 66
Query: 62 LQLFKANLLEEGSFDSIVDGC--DGVCHTASPFYHDAKDPQVELLDPA---VKGTLNVLN 116
L + + ++ + G + D V H+A+ Y D D + A V+G++NV
Sbjct: 67 LSVIEGSVTDAGLLERAFDSFKPTHVVHSAA-AYKDPDDW----AEDAATNVQGSINVAK 121
Query: 117 SCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAED 176
+ +K +KR++ + A G+P V + + P Y +SKT E
Sbjct: 122 AASKA-GVKRLLNFQT-ALCY--GRP--ATVPIPIDSPTAPFTS------YGISKTAGE- 168
Query: 177 AAWKFAKEKSIDLVTI---NPA---MVIGPLLQPTLNTSAAAVLSLIKGAQT--YPNVTF 228
F + +V++ N + IGP+ PT A +
Sbjct: 169 ---AFLMMSDVPVVSLRLANVTGPRLAIGPI--PTFYKRLKAGQKCFCSDTVRDF----- 218
Query: 229 GWVNVKDVANAHIQAFEVPSANGRYCL 255
+++ D + + G + +
Sbjct: 219 --LDMSDFLAIADLSLQEGRPTGVFNV 243
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* Length = 357 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 2e-09
Identities = 52/262 (19%), Positives = 91/262 (34%), Gaps = 42/262 (16%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
G+++ VTG +G+I S +VK L +G T V + D K +L+ L+ A + K
Sbjct: 45 EGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADY---MDKE 101
Query: 68 NLLEEGSFDSIVDGCDGVCHTA---SPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSI 124
+ L + + + H S D ++D + + +L+ C +
Sbjct: 102 DFLIQIMAGEEFGDVEAIFHEGACSSTTEWD-GKY---MMDNNYQYSKELLHYCLERE-- 155
Query: 125 KRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE 184
+ SS AA ++ + P + SK L ++ + E
Sbjct: 156 IPFLYASS-AATYGGR----TSDFIESREYEKPLNV------FGYSKFLFDEYVRQILPE 204
Query: 185 KSIDLVTINPAMVIGPLLQPTLNTSAAAVLS-----LIKGAQTYPNVTFGW--------V 231
+ +V V GP S A+V L G F V
Sbjct: 205 ANSQIVGFRYFNVYGPREGH--KGSMASVAFHLNTQLNNGESP---KLFEGSENFKRDFV 259
Query: 232 NVKDVANAHIQAFEVPSANGRY 253
V DVA+ ++ E +G +
Sbjct: 260 YVGDVADVNLWFLENG-VSGIF 280
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Length = 286 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 3e-09
Identities = 31/241 (12%), Positives = 72/241 (29%), Gaps = 46/241 (19%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ + G G + L + L ++G+ V R +Q A++
Sbjct: 6 ILIAGC-GDLGLELARRLTAQGHEVTGLRRSA------------QPMPAGVQTLIADVTR 52
Query: 72 EGSFDSIVDG-CDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLT 130
+ SIV + + + + + + ++ ++ G N L++ P ++ V
Sbjct: 53 PDTLASIVHLRPEILVYCVAASEYSDEHYRLSYVE----GLRNTLSALEGAP-LQHVFFV 107
Query: 131 SSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLV 190
SS V + + +DE + K + E A
Sbjct: 108 SS-TGVY----GQEVEEWLDEDTPPIAK--------DFSGKRMLE--AEALLAA--YSST 150
Query: 191 TINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY--PNVTFGWVNVKDVANAHIQAFEVPS 248
+ + + GP ++ + + + N ++ D A + S
Sbjct: 151 ILRFSGIYGP--------GRLRMIRQAQTPEQWPARNAWTNRIHRDDGAAFIAYLIQQRS 202
Query: 249 A 249
Sbjct: 203 H 203
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A Length = 345 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 4e-09
Identities = 35/213 (16%), Positives = 66/213 (30%), Gaps = 50/213 (23%)
Query: 12 VCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL- 69
V + G +G+I + L + LL Y V D L + ++
Sbjct: 3 VLILGVNGFIGNHLTERLLREDHYEV--YGLD-IGSDAISRFL----NHPHFHFVEGDIS 55
Query: 70 LEEGSFDSIVDGCDGVCHTASP----FYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIK 125
+ + V CD V + Y ++P + + + + L ++ C K+ K
Sbjct: 56 IHSEWIEYHVKKCDVVLPLVAIATPIEY--TRNP-LRVFELDFEENLRIIRYCVKYR--K 110
Query: 126 RVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPL--------------SK 171
R++ S T +V + E L SK
Sbjct: 111 RIIFPS------------TSEV------YGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSK 152
Query: 172 TLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQP 204
L + W + +++ + P +GP L
Sbjct: 153 QLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDN 185
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 3r14_A* Length = 221 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 6e-09
Identities = 30/240 (12%), Positives = 67/240 (27%), Gaps = 49/240 (20%)
Query: 12 VCVTGASGYIASWLVKLLLSR-GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLL 70
+ + GA+G IA L LL+ + R + ER+ + + +
Sbjct: 8 ITILGAAGQIAQXLTATLLTYTDMHITLYGRQLK-----TRIPPEIIDHERVTVIEGSFQ 62
Query: 71 EEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLT 130
G + V + V A + +++ + ++ +I+RV+
Sbjct: 63 NPGXLEQAVTNAEVVFVGAM---------------ESGSDMASIVKALSR-XNIRRVIGV 106
Query: 131 SSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLV 190
S L+ P + + Y + A + +E +++
Sbjct: 107 SMAG--LSGEFPVALEKWTFDNLPIS----------YVQGERQARNV----LRESNLNYT 150
Query: 191 TINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPSAN 250
+ + N LI + + V+ + V A
Sbjct: 151 ILRLTWLY--------NDPEXTDYELIPEGAQFND---AQVSREAVVKAIFDILHAADET 199
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A Length = 299 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 1e-08
Identities = 22/147 (14%), Positives = 51/147 (34%), Gaps = 21/147 (14%)
Query: 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGAS 59
M K+V V G +G + + LL G + V+ R+P L L GA
Sbjct: 2 MVDK-----KLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKE--LRLQGA- 53
Query: 60 ERLQLFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCA 119
++ + + ++ + ++G + + +++ +V+ + +
Sbjct: 54 ---EVVQGDQDDQVIMELALNGAYATFIVTNYWESCSQEQEVKQ-------GKLLADLAR 103
Query: 120 KFPSIKRVVLTSSM-AAVLNTGKPRTP 145
+ + VV + L G+
Sbjct: 104 RLG-LHYVVYSGLENIKKLTAGRLAAA 129
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 Length = 310 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 5e-08
Identities = 54/258 (20%), Positives = 90/258 (34%), Gaps = 42/258 (16%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ VTG +G+I S +VK L +G T V + D K +L+ L+ A + K + L
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADY---MDKEDFLI 58
Query: 72 EGSFDSIVDGCDGVCHTA---SPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVV 128
+ + + H S D K ++D + + +L+ C + +
Sbjct: 59 QIMAGEEFGDVEAIFHEGACSSTTEWDGK----YMMDNNYQYSKELLHYCLERE--IPFL 112
Query: 129 LTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSID 188
SS AA G ++ + P Y SK L ++ + E +
Sbjct: 113 YASS-AATY--GGR--TSDFIESREYEKPLNV------YGYSKFLFDEYVRQILPEANSQ 161
Query: 189 LVTINPAMVIGPLLQPTLNTSAAAVLS-----LIKGAQTYPNVTFGW--------VNVKD 235
+V V GP S A+V L G F V V D
Sbjct: 162 IVGFRYFNVYGPREGH--KGSMASVAFHLNTQLNNGESP---KLFEGSENFKRDFVYVGD 216
Query: 236 VANAHIQAFEVPSANGRY 253
VA+ ++ E +G +
Sbjct: 217 VADVNLWFLENG-VSGIF 233
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} Length = 286 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 2e-07
Identities = 44/253 (17%), Positives = 75/253 (29%), Gaps = 53/253 (20%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHL----LALDGASERLQ 63
G ++ G GY A L + L +G+ + + R+P+ + R L G L
Sbjct: 5 TGTLLSF-GH-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPSL- 61
Query: 64 LFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS 123
DG + + +P DP + L + A+
Sbjct: 62 ----------------DGVTHLLISTAP--DSGGDPVLAALGDQIA---------ARAAQ 94
Query: 124 IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAK 183
+ V S+ AV VDET P + +
Sbjct: 95 FRWVGYLST-TAVY----GDHDGAWVDETTPLTPT--------AARGRWRVMAEQQ-WQA 140
Query: 184 EKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQA 243
++ L A + GP P + +IK Q F ++V+D+A +
Sbjct: 141 VPNLPLHVFRLAGIYGPGRGPFSKLGKGGIRRIIKPGQ-----VFSRIHVEDIAQVLAAS 195
Query: 244 FEVPSANGRYCLV 256
P Y +
Sbjct: 196 MARPDPGAVYNVC 208
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* Length = 343 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 6e-07
Identities = 44/201 (21%), Positives = 77/201 (38%), Gaps = 53/201 (26%)
Query: 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKA-----SVRDPNDPKKTRHLLALDGASER 61
K + +TG +G++ S L L+ G+ V + R N H + E
Sbjct: 25 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRN----VEHWI----GHEN 76
Query: 62 LQLFKANLLEEGSFDSIVDGCDGVCHTASPF--YHDAKDPQVELLDPAVKGTLNVLNSCA 119
+L +++E + D + H ASP + +P ++ L GTLN+L
Sbjct: 77 FELINHDVVEP-----LYIEVDQIYHLASPASPPNYMYNP-IKTLKTNTIGTLNMLGLAK 130
Query: 120 KFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW------------Y 167
+ R++L S T +V + DPEV QSE + Y
Sbjct: 131 RVG--ARLLLAS------------TSEV------YGDPEVHPQSEDYWGHVNPIGPRACY 170
Query: 168 PLSKTLAEDAAWKFAKEKSID 188
K +AE + + K++ ++
Sbjct: 171 DEGKRVAETMCYAYMKQEGVE 191
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 Length = 313 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 3e-06
Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 1/99 (1%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
V + G +GYI +V +S G+ R + + L +L +A+L +
Sbjct: 7 VLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDD 66
Query: 72 EGSFDSIVDGCDGV-CHTASPFYHDAKDPQVELLDPAVK 109
+ D V A Q++L++ +
Sbjct: 67 HQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEAIKE 105
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 Length = 308 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 5e-06
Identities = 39/284 (13%), Positives = 89/284 (31%), Gaps = 62/284 (21%)
Query: 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN---DPKKTRHLLALDG 57
M S + + GA+GYI + K L G+ VR+ + +K + L +
Sbjct: 1 MGSR-----SRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESF-- 53
Query: 58 ASERLQLFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNS 117
+ + ++ + S V D V T ++ +N++ +
Sbjct: 54 KASGANIVHGSIDDHASLVEAVKNVDVVISTVGS--------------LQIESQVNIIKA 99
Query: 118 CAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPL--SKTLAE 175
+ ++KR + + +D + E + K
Sbjct: 100 IKEVGTVKRFFPSE---------------------FGNDVDNVHAVEPAKSVFEVKAKVR 138
Query: 176 DAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP---NVTFGWVN 232
A + + I ++ G L+ + A + + + N +V
Sbjct: 139 RA----IEAEGIPYTYVSSNCFAGYFLRS---LAQAGLTAPPRDKVVILGDGNARVVFVK 191
Query: 233 VKDVANAHIQAFEVPSANGRYCLV----ERVSHYSEIVNIIREL 272
+D+ I+A + P + + +S +E+V + +
Sbjct: 192 EEDIGTFTIKAVDDPRTLNKTLYLRLPANTLS-LNELVALWEKK 234
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* Length = 318 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 8e-06
Identities = 36/271 (13%), Positives = 74/271 (27%), Gaps = 57/271 (21%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ + G +GYI + +VK L G+ R + GA + K L E
Sbjct: 14 ILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGA----IIVKGELDE 69
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131
++ D V + P + +L + +IKR + +
Sbjct: 70 HEKLVELMKKVDVVISALAF--------------PQILDQFKILEAIKVAGNIKRFLPSD 115
Query: 132 SMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVT 191
+ + + + L + + + +E +I
Sbjct: 116 ---------------------FGVEEDRINALPPFEALIE--RKRMIRRAIEEANIPYTY 152
Query: 192 INPAM----VIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP 247
++ I LL+P V F +D+ I+ P
Sbjct: 153 VSANCFASYFINYLLRPYDPKDEITVY-------GTGEAKFAMNYEQDIGLYTIKVATDP 205
Query: 248 SA-NGRYCLV---ERVSHYSEIVNIIRELYP 274
A N ++ E+++ +
Sbjct: 206 RALNRVVIYRPSTNIIT-QLELISRWEKKIG 235
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* Length = 346 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 8e-06
Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 5/110 (4%)
Query: 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRD-PNDPKKTRHLLALDGAS 59
+S V + G+V+ + GA+G+I ++ L R P P K + AL
Sbjct: 3 VSPVPSPKGRVL-IAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKAL--ED 59
Query: 60 ERLQLFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVK 109
+ + + E+ + + I+ + S ++ Q+ L+
Sbjct: 60 KGAIIVYGLINEQEAMEKILKEHEIDI-VVSTVGGESILDQIALVKAMKA 108
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} Length = 362 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 1e-05
Identities = 50/281 (17%), Positives = 87/281 (30%), Gaps = 58/281 (20%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN--DPKKTRHLLALDGASERLQLFK 66
+ + +TG +G++ S L K V D + + +
Sbjct: 10 NQTILITGGAGFVGSNLAFHFQENHPKAKVVVLD-KFRSNTLFSNNRPSSLGHFKNLIGF 68
Query: 67 ANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPA------VKGTLNVLNSCAK 120
+ ++ +D +H A +L+ + LN+L
Sbjct: 69 KGEVIAADINNPLDLRRLEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARS 128
Query: 121 FPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWK 180
+V+ SS A V G + P PE Y SK + +
Sbjct: 129 --KKAKVIYASS-AGVY--GNTKAP---NVVGKNESPENV------YGFSKLCMD----E 170
Query: 181 FAKEKSIDLVTI-----NPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT-FGW---- 230
F S D V + N V GP +A+ VL L GA + V F +
Sbjct: 171 FVLSHSNDNVQVGLRYFN---VYGPREFYK-EKTASMVLQLALGAMAFKEVKLFEFGEQL 226
Query: 231 ---VNVKDVANAHIQAFEVPSANGRYCLVERVSHYSEIVNI 268
V ++DV A+++A + + S + N+
Sbjct: 227 RDFVYIEDVIQANVKAMK--------------AQKSGVYNV 253
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 215 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 1e-05
Identities = 43/266 (16%), Positives = 77/266 (28%), Gaps = 61/266 (22%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLALDGASERLQLFK 66
K V + GA+G L+ +LS V A R RL
Sbjct: 5 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKAL------------AEHPRLDNPV 52
Query: 67 ANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQV-ELLDPAVKGTLNVLNSCAKFPSIK 125
L E + D +A + +D L V + +
Sbjct: 53 GPLAE--LLPQLDGSIDTAFCCLGTTIKEAGSEEAFRAVD--FDLPLAVGKRALEMG-AR 107
Query: 126 RVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK 185
++ S++ A D +S ++Y K E A +E+
Sbjct: 108 HYLVVSALGA--------------------DA----KSSIFYNRVKGELEQA----LQEQ 139
Query: 186 SIDLVTI-NPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAF 244
+TI P+++ GP + L AA ++ I + + + D+A A +
Sbjct: 140 GWPQLTIARPSLLFGPREEFRLAEILAAPIARILPGKYHG------IEACDLARALWRLA 193
Query: 245 EVPSANGRYCLVERVSHYSEIVNIIR 270
R E+ + +
Sbjct: 194 LEEGKGV------RFVESDELRKLGK 213
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* Length = 357 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 3e-05
Identities = 33/135 (24%), Positives = 53/135 (39%), Gaps = 10/135 (7%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKA-SVRDPNDPKKTRHLLALDGASERLQLFKA 67
GK V VTG +G+ WL L + G TVK S L ++ +Q
Sbjct: 9 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYS----LTAPTVPSLFETARVADGMQSEIG 64
Query: 68 NLLEEGSFDSIVDGC--DGVCHTAS-PFYHDA-KDPQVELLDPAVKGTLNVLNSCAKFPS 123
++ ++ + + V H A+ P + +P VE V GT+ +L +
Sbjct: 65 DIRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEP-VETYSTNVMGTVYLLEAIRHVGG 123
Query: 124 IKRVVLTSSMAAVLN 138
+K VV +S N
Sbjct: 124 VKAVVNITSDKCYDN 138
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} Length = 289 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 9e-05
Identities = 20/134 (14%), Positives = 41/134 (30%), Gaps = 19/134 (14%)
Query: 14 VTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEE 72
+TGA+G++ + + ++ VR+ K S R + + +
Sbjct: 5 LTGATGHLGTHITNQAIANHIDHFHIGVRNVE---KVPDDWR-GKVSVR----QLDYFNQ 56
Query: 73 GSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132
S G D V H + + N++ + AK + ++
Sbjct: 57 ESMVEAFKGMDTV-VFIPSIIHPSFK--------RIPEVENLVYA-AKQSGVAHIIFIGY 106
Query: 133 MAAVLNTGKPRTPD 146
A N +P
Sbjct: 107 YADQHNNPFHMSPY 120
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} Length = 321 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 2e-04
Identities = 13/105 (12%), Positives = 34/105 (32%), Gaps = 4/105 (3%)
Query: 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASER-LQL 64
+ + + + G +GYI ++V+ LS + R + + + +
Sbjct: 1 GSHMEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTI 60
Query: 65 FKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVK 109
+ + E S++ D V Q+ +++
Sbjct: 61 IEGEMEEHEKMVSVLKQVDIVISALPF---PMISSQIHIINAIKA 102
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* Length = 286 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 24/125 (19%)
Query: 14 VTGASGYIASWLVKLLLSR--GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+TGA+G + ++++ L+ + A VR+P + LA G + R +A+ +
Sbjct: 4 ITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQ----ALAAQGITVR----QADYGD 55
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVK-GTLNVLNSCAKFPSIKRVVLT 130
E + S + G + + +S +++ A G +K + T
Sbjct: 56 EAALTSALQGVEKLLLISSSEVGQRAPQHRNVINAAKAAG-------------VKFIAYT 102
Query: 131 SSMAA 135
S + A
Sbjct: 103 SLLHA 107
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 2e-04
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 12/81 (14%)
Query: 8 AGKVVCVTGAS-GYIASWLVKLLLSRGYTVKASVRDPNDPKKTRH---LLALDGASE-RL 62
K V +TGA G I + +++ LL G V + + T + + A GA L
Sbjct: 475 KDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRF-SKQVTDYYQSIYAKYGAKGSTL 533
Query: 63 QLFKANLLEEGSF---DSIVD 80
+ N GS +++++
Sbjct: 534 IVVPFNQ---GSKQDVEALIE 551
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D Length = 287 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 20/124 (16%)
Query: 14 VTGASGYIASWLVKLLLSR--GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
VTGA+G + +++ LL + + A VR+ LA G ++ + +
Sbjct: 5 VTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKAST----LADQGV----EVRHGDYNQ 56
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131
S G + + P Y + + NV+ + A+ +K + T
Sbjct: 57 PESLQKAFAGVSKLLFISGPHYDNTL---------LIVQHANVVKA-ARDAGVKHIAYTG 106
Query: 132 SMAA 135
A
Sbjct: 107 YAFA 110
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} Length = 307 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 3e-04
Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 5/100 (5%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKK--TRHLLALDGASERLQLFKANL 69
+ + G +G I +V + G A VR T+ L + S + L + ++
Sbjct: 5 ILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDI 64
Query: 70 LEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVK 109
+ + + D V A + QV+++ +
Sbjct: 65 NDHETLVKAIKQVDIVICAAGR---LLIEDQVKIIKAIKE 101
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} Length = 516 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 4e-04
Identities = 18/76 (23%), Positives = 25/76 (32%), Gaps = 18/76 (23%)
Query: 14 VTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEG 73
+TG+ G + L L + G+ V VR P K D + L
Sbjct: 152 ITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGKRF----WDPLNPASDLL-------- 199
Query: 74 SFDSIVDGCDGVCHTA 89
DG D + H A
Sbjct: 200 ------DGADVLVHLA 209
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 281 | |||
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 100.0 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 100.0 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 100.0 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 100.0 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 100.0 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 100.0 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 100.0 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 100.0 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 100.0 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 100.0 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 100.0 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 100.0 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 100.0 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 100.0 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 100.0 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 100.0 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 100.0 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 100.0 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 100.0 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 100.0 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 100.0 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 100.0 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 100.0 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 100.0 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 100.0 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 100.0 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 100.0 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 100.0 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 100.0 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 100.0 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 100.0 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 100.0 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 100.0 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 100.0 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 100.0 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 100.0 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 100.0 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 100.0 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 100.0 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 100.0 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 100.0 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 100.0 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 100.0 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 100.0 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 100.0 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 100.0 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 100.0 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 100.0 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 100.0 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 100.0 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 100.0 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 100.0 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 100.0 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 100.0 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 100.0 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 100.0 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 100.0 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 100.0 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 100.0 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 100.0 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 100.0 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 100.0 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 100.0 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 100.0 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 100.0 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 100.0 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 100.0 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 100.0 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 100.0 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 99.98 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 99.97 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 99.97 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 99.97 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 99.97 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 99.97 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 99.97 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 99.97 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 99.97 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 99.97 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 99.97 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 99.97 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 99.97 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 99.97 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 99.97 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 99.97 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 99.97 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 99.97 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 99.97 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 99.97 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 99.97 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 99.97 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 99.97 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.97 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.97 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.97 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 99.97 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 99.97 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 99.97 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 99.96 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 99.96 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 99.96 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 99.96 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 99.96 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 99.96 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 99.96 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 99.96 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 99.96 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 99.96 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 99.96 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 99.96 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 99.96 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 99.96 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 99.96 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 99.96 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 99.96 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 99.96 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 99.96 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 99.96 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 99.96 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 99.96 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 99.96 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 99.96 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 99.96 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 99.96 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 99.96 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 99.96 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 99.96 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 99.96 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 99.96 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 99.96 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 99.96 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.96 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 99.96 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 99.96 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 99.96 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 99.96 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.96 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 99.96 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 99.96 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 99.96 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 99.96 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 99.96 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 99.96 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 99.96 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 99.96 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 99.96 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 99.96 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 99.96 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 99.96 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 99.96 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 99.96 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 99.96 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 99.96 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 99.96 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 99.96 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 99.96 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 99.96 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.96 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 99.96 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 99.96 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 99.96 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 99.96 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 99.96 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 99.96 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 99.96 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 99.96 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 99.96 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 99.96 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 99.96 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 99.96 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 99.96 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 99.96 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 99.96 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 99.96 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 99.96 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 99.96 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 99.96 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 99.96 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 99.96 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 99.96 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.96 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.96 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 99.96 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 99.96 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 99.96 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 99.96 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 99.96 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 99.96 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 99.96 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 99.96 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 99.96 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 99.96 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 99.96 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 99.95 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 99.95 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 99.95 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 99.95 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 99.95 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 99.95 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.95 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 99.95 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 99.95 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 99.95 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 99.95 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 99.95 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 99.95 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 99.95 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.95 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 99.95 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.95 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 99.95 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 99.95 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 99.95 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.95 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 99.95 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 99.95 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 99.95 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 99.95 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.95 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 99.95 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 99.95 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 99.95 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 99.95 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 99.95 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.95 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 99.95 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 99.95 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 99.95 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 99.95 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 99.95 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 99.95 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 99.95 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 99.95 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 99.95 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 99.95 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 99.95 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 99.95 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 99.95 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 99.95 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 99.95 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 99.95 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.95 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 99.95 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 99.95 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 99.95 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 99.95 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 99.95 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 99.95 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 99.95 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 99.95 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 99.95 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 99.95 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.95 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 99.95 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 99.95 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 99.95 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 99.95 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 99.95 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 99.95 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 99.95 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 99.95 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 99.95 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 99.94 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 99.94 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 99.94 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 99.94 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 99.94 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 99.94 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 99.94 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 99.94 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 99.94 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 99.94 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 99.94 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 99.94 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 99.94 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 99.94 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 99.94 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 99.94 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.94 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 99.94 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 99.94 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 99.94 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 99.93 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 99.93 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 99.93 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 99.93 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 99.92 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 99.91 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 99.91 | |
| 1d7o_A | 297 | Enoyl-[acyl-carrier protein] reductase (NADH) PRE; | 99.91 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 99.9 | |
| 2ptg_A | 319 | Enoyl-acyl carrier reductase; apicomplexa, enoyl ( | 99.9 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 99.9 | |
| 2o2s_A | 315 | Enoyl-acyl carrier reductase; enoyl reductase, tri | 99.89 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 99.88 | |
| 3lt0_A | 329 | Enoyl-ACP reductase; triclosan, triclosan variant, | 99.88 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 99.86 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 99.86 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 99.84 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.84 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.83 | |
| 3zu3_A | 405 | Putative reductase YPO4104/Y4119/YP_4011; oxidored | 99.83 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 99.8 | |
| 4eue_A | 418 | Putative reductase CA_C0462; TER, biofuel, synthet | 99.8 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 99.8 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 99.79 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 99.78 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 99.76 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 99.64 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 99.6 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 99.38 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 99.32 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 99.24 | |
| 4ggo_A | 401 | Trans-2-enoyl-COA reductase; rossmann fold, oxidor | 99.16 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 99.12 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 99.11 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 99.08 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 99.06 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.95 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 98.91 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 98.84 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.81 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 98.78 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 98.76 | |
| 1u7z_A | 226 | Coenzyme A biosynthesis bifunctional protein coabc | 98.76 | |
| 2gk4_A | 232 | Conserved hypothetical protein; alpha-beta-alpha s | 98.74 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 98.66 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 98.65 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 98.64 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.61 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 98.58 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 98.46 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 98.43 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 98.41 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.4 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 98.38 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 98.32 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 98.27 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 98.24 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 98.23 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.22 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 98.19 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 98.17 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 98.17 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 98.17 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 98.16 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 98.15 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 98.15 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 98.15 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 98.12 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 98.12 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 98.11 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 98.1 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 98.07 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 98.05 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 98.03 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 98.01 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 98.01 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 98.01 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 98.0 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 98.0 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 98.0 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 97.97 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 97.95 | |
| 1p9o_A | 313 | Phosphopantothenoylcysteine synthetase; ligase; 2. | 97.93 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 97.93 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.91 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 97.88 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.88 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 97.87 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 97.86 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 97.84 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 97.81 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 97.81 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.81 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 97.81 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 97.8 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 97.8 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 97.8 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 97.79 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 97.78 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 97.78 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 97.77 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 97.74 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 97.72 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 97.71 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.7 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 97.7 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 97.68 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 97.68 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 97.67 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 97.66 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 97.64 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 97.64 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 97.64 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 97.63 | |
| 3gxh_A | 157 | Putative phosphatase (DUF442); YP_001181608.1, str | 97.62 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 97.62 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 97.62 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 97.62 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 97.61 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 97.61 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 97.59 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 97.58 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 97.57 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 97.56 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 97.56 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 97.55 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 97.55 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 97.54 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 97.54 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 97.52 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 97.51 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 97.51 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 97.49 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 97.49 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 97.48 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 97.46 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 97.46 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 97.46 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 97.46 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 97.45 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 97.45 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 97.44 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 97.42 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 97.41 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 97.41 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 97.4 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.4 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 97.4 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 97.4 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 97.4 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 97.37 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 97.36 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 97.36 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 97.36 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 97.34 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 97.29 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 97.29 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 97.28 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 97.27 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 97.26 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 97.26 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 97.25 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 97.25 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 97.24 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 97.24 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 97.24 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 97.23 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 97.22 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 97.21 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 97.21 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 97.2 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 97.2 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 97.19 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 97.18 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 97.18 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 97.18 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 97.17 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 97.17 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 97.16 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 97.16 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 97.15 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 97.15 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 97.14 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 97.14 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 97.14 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 97.13 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 97.13 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 97.13 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 97.11 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 97.08 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 97.08 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 97.08 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 97.07 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 97.05 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 97.05 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 97.05 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 97.05 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 97.04 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 97.04 | |
| 3ax6_A | 380 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 97.03 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 97.02 | |
| 3k5i_A | 403 | Phosphoribosyl-aminoimidazole carboxylase; purine | 97.02 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 97.02 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 97.01 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 97.01 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 97.0 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 97.0 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 97.0 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 96.99 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 96.98 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 96.97 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 96.96 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 96.96 |
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-41 Score=289.79 Aligned_cols=258 Identities=16% Similarity=0.165 Sum_probs=200.4
Q ss_pred hhccCCCeEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcC
Q 023515 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG 81 (281)
Q Consensus 4 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 81 (281)
|+++++|+|||||||||||++|+++|+++| ++|++++|....... ..+... ....+++++++|++|++.+.+++++
T Consensus 19 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~-~~l~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~ 96 (346)
T 4egb_A 19 YFQSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNL-NNVKSI-QDHPNYYFVKGEIQNGELLEHVIKE 96 (346)
T ss_dssp -----CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCG-GGGTTT-TTCTTEEEEECCTTCHHHHHHHHHH
T ss_pred ccccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccch-hhhhhh-ccCCCeEEEEcCCCCHHHHHHHHhh
Confidence 445668899999999999999999999999 788888886532211 111111 1125799999999999999999986
Q ss_pred --CcEeEEecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChh
Q 023515 82 --CDGVCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPE 158 (281)
Q Consensus 82 --~d~Vih~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~ 158 (281)
+|+|||+|+..... ....++..+++|+.++.+++++|++. ++++|||+||.++|... ....+++|+++..|.
T Consensus 97 ~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~-~~~~~v~~SS~~vy~~~----~~~~~~~E~~~~~p~ 171 (346)
T 4egb_A 97 RDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKY-PHIKLVQVSTDEVYGSL----GKTGRFTEETPLAPN 171 (346)
T ss_dssp HTCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHS-TTSEEEEEEEGGGGCCC----CSSCCBCTTSCCCCC
T ss_pred cCCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEeCchHHhCCC----CcCCCcCCCCCCCCC
Confidence 99999999974432 23455689999999999999999998 88999999998776522 234567888877653
Q ss_pred hhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCC--C--CCCCCccceeHH
Q 023515 159 VCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--T--YPNVTFGWVNVK 234 (281)
Q Consensus 159 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~i~~~ 234 (281)
+.|+.+|.++|.+++.+++++|++++++||+.+|||...+. .....++.....+.+ . .+.+.++|+|++
T Consensus 172 ------~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 244 (346)
T 4egb_A 172 ------SPYSSSKASADMIALAYYKTYQLPVIVTRCSNNYGPYQYPE-KLIPLMVTNALEGKKLPLYGDGLNVRDWLHVT 244 (346)
T ss_dssp ------SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTT-SHHHHHHHHHHTTCCCEEETTSCCEECEEEHH
T ss_pred ------ChhHHHHHHHHHHHHHHHHHhCCCEEEEeecceeCcCCCcc-chHHHHHHHHHcCCCceeeCCCCeEEeeEEHH
Confidence 67999999999999999988899999999999999986543 334455666666663 2 257889999999
Q ss_pred HHHHHHHHhhcCCCCCccEEEec-CCCCHHHHHHHHHHhCCC
Q 023515 235 DVANAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 235 D~a~~i~~~~~~~~~~g~~~~~~-~~~t~~e~~~~i~~~~~~ 275 (281)
|+|++++.+++++..+++||+++ +.+++.|+++.+.+.+|.
T Consensus 245 Dva~a~~~~~~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~ 286 (346)
T 4egb_A 245 DHCSAIDVVLHKGRVGEVYNIGGNNEKTNVEVVEQIITLLGK 286 (346)
T ss_dssp HHHHHHHHHHHHCCTTCEEEECCSCCEEHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcCCCCCEEEECCCCceeHHHHHHHHHHHhCC
Confidence 99999999999877666999975 679999999999999875
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-40 Score=281.40 Aligned_cols=240 Identities=17% Similarity=0.209 Sum_probs=199.2
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEe
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~ 88 (281)
+|+|||||||||||++|+++|+++|++|++++|++.... + .+++++++|++ .+++.++++++|+|||+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~----------~~~~~~~~Dl~-~~~~~~~~~~~d~Vih~ 69 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA-I----------NDYEYRVSDYT-LEDLINQLNDVDAVVHL 69 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC----------------CCEEEECCCC-HHHHHHHTTTCSEEEEC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-C----------CceEEEEcccc-HHHHHHhhcCCCEEEEc
Confidence 578999999999999999999999999999999843322 1 26889999999 99999999999999999
Q ss_pred cccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchhh
Q 023515 89 ASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYP 168 (281)
Q Consensus 89 a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~ 168 (281)
|+..... .++..+++|+.++.+++++|++. ++++|||+||.++|.. ....+++|+++..|. +.|+
T Consensus 70 a~~~~~~---~~~~~~~~n~~~~~~ll~a~~~~-~~~r~v~~SS~~vyg~-----~~~~~~~E~~~~~p~------~~Y~ 134 (311)
T 3m2p_A 70 AATRGSQ---GKISEFHDNEILTQNLYDACYEN-NISNIVYASTISAYSD-----ETSLPWNEKELPLPD------LMYG 134 (311)
T ss_dssp CCCCCSS---SCGGGTHHHHHHHHHHHHHHHHT-TCCEEEEEEEGGGCCC-----GGGCSBCTTSCCCCS------SHHH
T ss_pred cccCCCC---ChHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEccHHHhCC-----CCCCCCCCCCCCCCC------chhH
Confidence 9975543 44588999999999999999998 8899999999877642 223567888776653 6799
Q ss_pred hhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCC--C--CCCCCccceeHHHHHHHHHHhh
Q 023515 169 LSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--T--YPNVTFGWVNVKDVANAHIQAF 244 (281)
Q Consensus 169 ~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~i~~~D~a~~i~~~~ 244 (281)
.+|.++|++++.++++.|++++++||+.+|||...+. .....++..+..+.+ . .+++.++|+|++|+|++++.++
T Consensus 135 ~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~v~Dva~a~~~~~ 213 (311)
T 3m2p_A 135 VSKLACEHIGNIYSRKKGLCIKNLRFAHLYGFNEKNN-YMINRFFRQAFHGEQLTLHANSVAKREFLYAKDAAKSVIYAL 213 (311)
T ss_dssp HHHHHHHHHHHHHHHHSCCEEEEEEECEEECSCC--C-CHHHHHHHHHHTCCCEEESSBCCCCEEEEEHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeeCceeCcCCCCC-CHHHHHHHHHHcCCCeEEecCCCeEEceEEHHHHHHHHHHHH
Confidence 9999999999999998999999999999999986543 334455666666663 2 2578899999999999999999
Q ss_pred cCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCC
Q 023515 245 EVPSANGRYCLV-ERVSHYSEIVNIIRELYPAF 276 (281)
Q Consensus 245 ~~~~~~g~~~~~-~~~~t~~e~~~~i~~~~~~~ 276 (281)
+++..+++||++ ++.+|+.|+++.+.+.+|..
T Consensus 214 ~~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~ 246 (311)
T 3m2p_A 214 KQEKVSGTFNIGSGDALTNYEVANTINNAFGNK 246 (311)
T ss_dssp TCTTCCEEEEECCSCEECHHHHHHHHHHHTTCT
T ss_pred hcCCCCCeEEeCCCCcccHHHHHHHHHHHhCCC
Confidence 988766799987 57899999999999999853
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-41 Score=289.88 Aligned_cols=257 Identities=16% Similarity=0.175 Sum_probs=204.3
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcch-hhhhhhccCC--CCcEEEEEcCCCCcCcHHHHhcCCc
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKK-TRHLLALDGA--SERLQLFKANLLEEGSFDSIVDGCD 83 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~d 83 (281)
+++|+|||||||||||++|+++|+++|++|++++|....... +..+...... ..+++++++|++|++++.++++++|
T Consensus 23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d 102 (351)
T 3ruf_A 23 FSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVD 102 (351)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTCS
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCCC
Confidence 468899999999999999999999999999999997764332 2222111000 0478999999999999999999999
Q ss_pred EeEEecccCCC-CCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhcc
Q 023515 84 GVCHTASPFYH-DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQ 162 (281)
Q Consensus 84 ~Vih~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 162 (281)
+|||+||.... .....+...+++|+.++.+++++|++. ++++|||+||.++|.. ....+++|+++..|.
T Consensus 103 ~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~-~~~~~v~~SS~~vyg~-----~~~~~~~E~~~~~p~---- 172 (351)
T 3ruf_A 103 HVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNA-QVQSFTYAASSSTYGD-----HPALPKVEENIGNPL---- 172 (351)
T ss_dssp EEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-TCSEEEEEEEGGGGTT-----CCCSSBCTTCCCCCC----
T ss_pred EEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEecHHhcCC-----CCCCCCccCCCCCCC----
Confidence 99999986331 112234478899999999999999998 8899999999877642 234567888876543
Q ss_pred CCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCC---CccHHHHHHHHhCCCC----CCCCCccceeHHH
Q 023515 163 SELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL---NTSAAAVLSLIKGAQT----YPNVTFGWVNVKD 235 (281)
Q Consensus 163 ~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~i~~~D 235 (281)
+.|+.+|.++|.+++.+++++|++++++||+++|||...+.. .....++..+..+.+. .+++.++|+|++|
T Consensus 173 --~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~D 250 (351)
T 3ruf_A 173 --SPYAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDN 250 (351)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHCCCCEEEEECSEESTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHH
T ss_pred --ChhHHHHHHHHHHHHHHHHHhCCCEEEEeeCceeCcCCCCCcchhhHHHHHHHHHHcCCCcEEeCCCCeEEeeEEHHH
Confidence 679999999999999999888999999999999999865432 2234556666676632 2578899999999
Q ss_pred HHHHHHHhhcCC--CCCccEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 236 VANAHIQAFEVP--SANGRYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 236 ~a~~i~~~~~~~--~~~g~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
+|++++.++.+. ..+++||++ ++.+|+.|+++.+.+.+|.
T Consensus 251 va~a~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~ 293 (351)
T 3ruf_A 251 VIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNL 293 (351)
T ss_dssp HHHHHHHHHTCCGGGCSEEEEESCSCCEEHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhccccCCCEEEeCCCCcccHHHHHHHHHHHhCc
Confidence 999999999872 335599987 5789999999999999875
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-40 Score=282.50 Aligned_cols=268 Identities=35% Similarity=0.595 Sum_probs=192.1
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEc-CCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVR-DPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 87 (281)
+|+|||||||||||++++++|+++|++|++++| ++........+........+++++++|++|++++.++++++|+|||
T Consensus 1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih 80 (322)
T 2p4h_X 1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAAIEGCVGIFH 80 (322)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CCCHHHHTSTTHHHHEEECCCCTTCGGGGHHHHTTCSEEEE
T ss_pred CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhHHHHHHhhhccCCceEEEecCCCCHHHHHHHHcCCCEEEE
Confidence 478999999999999999999999999999998 5432111111111110012588999999999999999999999999
Q ss_pred ecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhh--hccCCc
Q 023515 88 TASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEV--CKQSEL 165 (281)
Q Consensus 88 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~--~~~~~~ 165 (281)
+|+.......++++.++++|+.|+.+++++|.+.+++++|||+||.+++++.+. ...+++|+++..+.. +..+..
T Consensus 81 ~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~SS~~~~~~~~~---~~~~~~e~~~~~~~~~~~~~p~~ 157 (322)
T 2p4h_X 81 TASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTSSGSAVSFNGK---DKDVLDESDWSDVDLLRSVKPFG 157 (322)
T ss_dssp CCCCC--------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEEEGGGTSCSSS---CCSEECTTCCCCHHHHHHHCCTT
T ss_pred cCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeccHHHcccCCC---CCeecCCccccchhhhcccCccc
Confidence 998653222333446899999999999999998645789999999876654321 234677776544321 111222
Q ss_pred -hhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC-CCCCCCCccceeHHHHHHHHHHh
Q 023515 166 -WYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA-QTYPNVTFGWVNVKDVANAHIQA 243 (281)
Q Consensus 166 -~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~D~a~~i~~~ 243 (281)
.|+.||.++|.+++++++++|++++++||+++|||...+........+.....+. ..++...++|+|++|+|++++.+
T Consensus 158 ~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~Dva~a~~~~ 237 (322)
T 2p4h_X 158 WNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQIGVTRFHMVHVDDVARAHIYL 237 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEEEEECEEESCCCSSSCCHHHHHHTHHHHSCGGGCCEEEEEEEEHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCcEEEEcCCceECCCCCCCCCchHHHHHHHHhCCCccCcCCCcCEEEHHHHHHHHHHH
Confidence 4999999999999998887899999999999999976533221111222233443 22333334899999999999999
Q ss_pred hcCCCCCccEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 023515 244 FEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLP 279 (281)
Q Consensus 244 ~~~~~~~g~~~~~~~~~t~~e~~~~i~~~~~~~~~p 279 (281)
++++...|.||++++.+|+.|+++.+.+.++..++|
T Consensus 238 ~~~~~~~g~~~~~~~~~s~~e~~~~i~~~~~~~~~~ 273 (322)
T 2p4h_X 238 LENSVPGGRYNCSPFIVPIEEMSQLLSAKYPEYQIL 273 (322)
T ss_dssp HHSCCCCEEEECCCEEEEHHHHHHHHHHHCTTSCCC
T ss_pred hhCcCCCCCEEEcCCCCCHHHHHHHHHHhCCCCCCC
Confidence 987655678997778899999999999988765554
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=285.60 Aligned_cols=269 Identities=40% Similarity=0.678 Sum_probs=191.0
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEe
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~ 88 (281)
+|+|||||||||||++|+++|+++|++|+++.|+.++......+.... ...+++++++|++|++++.++++++|+|||+
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~ 87 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQ-ELGDLKIFRADLTDELSFEAPIAGCDFVFHV 87 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHG-GGSCEEEEECCTTTSSSSHHHHTTCSEEEEE
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcC-CCCcEEEEecCCCChHHHHHHHcCCCEEEEe
Confidence 689999999999999999999999999999999765433222111111 1236889999999999999999999999999
Q ss_pred cccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhh--hccCCc-
Q 023515 89 ASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEV--CKQSEL- 165 (281)
Q Consensus 89 a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~--~~~~~~- 165 (281)
|+.......++.++.+++|+.|+.+++++|.+.+++++|||+||.+++++.+.. ....+++|+++..+.. +..+..
T Consensus 88 A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS~~~~~~~~~~-~~~~~~~E~~~~~~~~~~~~~~~~~ 166 (338)
T 2rh8_A 88 ATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTINQLD-GTGLVVDEKNWTDIEFLTSAKPPTW 166 (338)
T ss_dssp SSCCCC---------CHHHHHHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHT-CSCCCCCTTTTTCC-------CCCC
T ss_pred CCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEecHHHeecCCcC-CCCcccChhhccchhhccccCCccc
Confidence 987533223333358899999999999999997338899999998765532111 1113567765433211 111112
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCC-CCC--------CCCccceeHHHH
Q 023515 166 WYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ-TYP--------NVTFGWVNVKDV 236 (281)
Q Consensus 166 ~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~-~~~--------~~~~~~i~~~D~ 236 (281)
.|+.||.++|.+++.+++++|++++++||+++|||............+.....+.+ .++ ...++|+|++|+
T Consensus 167 ~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~v~Dv 246 (338)
T 2rh8_A 167 GYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEFLINGMKGMQMLSGSVSIAHVEDV 246 (338)
T ss_dssp CCTTSCCHHHHHHHHHHHHHTCCEEEEEECEEESCCSSSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHSSEEEEEHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCccccccccccccccCcccEEEHHHH
Confidence 49999999999999988778999999999999999865432221121222223321 111 123489999999
Q ss_pred HHHHHHhhcCCCCCccEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 023515 237 ANAHIQAFEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLP 279 (281)
Q Consensus 237 a~~i~~~~~~~~~~g~~~~~~~~~t~~e~~~~i~~~~~~~~~p 279 (281)
|++++.+++++...|.|+++++.+|+.|+++.+.+.++..++|
T Consensus 247 a~a~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~~~~~~~~~ 289 (338)
T 2rh8_A 247 CRAHIFVAEKESASGRYICCAANTSVPELAKFLSKRYPQYKVP 289 (338)
T ss_dssp HHHHHHHHHCTTCCEEEEECSEEECHHHHHHHHHHHCTTSCCC
T ss_pred HHHHHHHHcCCCcCCcEEEecCCCCHHHHHHHHHHhCCCCCCC
Confidence 9999999987666678998877799999999999988755554
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-40 Score=282.64 Aligned_cols=270 Identities=44% Similarity=0.753 Sum_probs=195.7
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
.++++|||||||||||++++++|+++|++|++++|+......+..+........+++++++|++|++++.++++++|+||
T Consensus 3 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi 82 (337)
T 2c29_D 3 SQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGVF 82 (337)
T ss_dssp ---CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCEEE
Confidence 35789999999999999999999999999999999876433322211111001258899999999999999999999999
Q ss_pred EecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhh--h-ccC
Q 023515 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEV--C-KQS 163 (281)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~--~-~~~ 163 (281)
|+|+.......++.+..+++|+.|+.+++++|.+.+++++|||+||.+++++.. ....+++|+.+..... + ..+
T Consensus 83 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS~~~~~~~~---~~~~~~~E~~~~~~~~~~~~~~~ 159 (337)
T 2c29_D 83 HVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQE---HQLPVYDESCWSDMEFCRAKKMT 159 (337)
T ss_dssp ECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECCGGGTSCSS---SCCSEECTTCCCCHHHHHHHCCT
T ss_pred EeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeeeHhhcccCC---CCCcccCcccCCchhhhcccCCc
Confidence 999875332233344688999999999999999873378999999987766432 1234567776543221 1 112
Q ss_pred CchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCC-CCC-CCCccceeHHHHHHHHH
Q 023515 164 ELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ-TYP-NVTFGWVNVKDVANAHI 241 (281)
Q Consensus 164 ~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~i~~~D~a~~i~ 241 (281)
...|+.||.++|.+++.+++++|++++++||+++|||...+..............+.+ .++ .....|+|++|+|++++
T Consensus 160 ~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~v~Dva~a~~ 239 (337)
T 2c29_D 160 AWMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAHI 239 (337)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTCCEEEEEECEEESCCSCSSCCHHHHHHTHHHHTCGGGHHHHTEEEEEEHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCCccccccCCCCEEEHHHHHHHHH
Confidence 3469999999999999988778999999999999999865432211111111133321 111 11234999999999999
Q ss_pred HhhcCCCCCccEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 023515 242 QAFEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLP 279 (281)
Q Consensus 242 ~~~~~~~~~g~~~~~~~~~t~~e~~~~i~~~~~~~~~p 279 (281)
.+++++...|.|+++++..|+.|+++.+.+.++..++|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~~~~~~~ 277 (337)
T 2c29_D 240 YLFENPKAEGRYICSSHDCIILDLAKMLREKYPEYNIP 277 (337)
T ss_dssp HHHHCTTCCEEEEECCEEEEHHHHHHHHHHHCTTSCCC
T ss_pred HHhcCcccCceEEEeCCCCCHHHHHHHHHHHCCCccCC
Confidence 99987666678888877799999999999988655444
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-39 Score=275.92 Aligned_cols=242 Identities=18% Similarity=0.195 Sum_probs=193.5
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC-CcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN-DPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 87 (281)
||+|||||||||||++|+++|+++| .+++++++.. ....+ ...++++.+|+++ +++.++++++|+|||
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g-~~v~~~~~~~~~~~~~---------~~~~~~~~~Dl~~-~~~~~~~~~~d~vih 69 (313)
T 3ehe_A 1 MSLIVVTGGAGFIGSHVVDKLSESN-EIVVIDNLSSGNEEFV---------NEAARLVKADLAA-DDIKDYLKGAEEVWH 69 (313)
T ss_dssp --CEEEETTTSHHHHHHHHHHTTTS-CEEEECCCSSCCGGGS---------CTTEEEECCCTTT-SCCHHHHTTCSEEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHhCC-CEEEEEcCCCCChhhc---------CCCcEEEECcCCh-HHHHHHhcCCCEEEE
Confidence 4689999999999999999999999 5555554433 22221 2468999999999 999999999999999
Q ss_pred ecccCC-CCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCch
Q 023515 88 TASPFY-HDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (281)
Q Consensus 88 ~a~~~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 166 (281)
+|+... ....+.++..+++|+.++.+++++|++. ++++|||+||.++|.. ....+++|+.+..| .+.
T Consensus 70 ~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~-~~~~iv~~SS~~vyg~-----~~~~~~~E~~~~~~------~~~ 137 (313)
T 3ehe_A 70 IAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKA-GVSRIVFTSTSTVYGE-----AKVIPTPEDYPTHP------ISL 137 (313)
T ss_dssp CCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEECCGGGGCS-----CSSSSBCTTSCCCC------CSH
T ss_pred CCCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCeEEEeCchHHhCc-----CCCCCCCCCCCCCC------CCH
Confidence 998633 2334566789999999999999999997 7889999999877642 23445777776554 367
Q ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC-C--CC--CCCCccceeHHHHHHHHH
Q 023515 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA-Q--TY--PNVTFGWVNVKDVANAHI 241 (281)
Q Consensus 167 Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~-~--~~--~~~~~~~i~~~D~a~~i~ 241 (281)
|+.+|.++|.+++.+++++|++++++||+.+|||.... ......+.....+. + .+ +++.++|+|++|+|++++
T Consensus 138 Y~~sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~ 215 (313)
T 3ehe_A 138 YGASKLACEALIESYCHTFDMQAWIYRFANVIGRRSTH--GVIYDFIMKLKRNPEELEILGNGEQNKSYIYISDCVDAML 215 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEEECSCEESTTCCC--SHHHHHHHHHHHCTTEEEESTTSCCEECCEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEeeccccCcCCCc--ChHHHHHHHHHcCCCceEEeCCCCeEEeEEEHHHHHHHHH
Confidence 99999999999999999999999999999999998653 23445566666653 2 23 568899999999999999
Q ss_pred HhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 242 QAFEVPSANGRYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 242 ~~~~~~~~~g~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
.+++....+++||++ ++.+|+.|+++.+.+.+|.
T Consensus 216 ~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~ 250 (313)
T 3ehe_A 216 FGLRGDERVNIFNIGSEDQIKVKRIAEIVCEELGL 250 (313)
T ss_dssp HHTTCCSSEEEEECCCSCCEEHHHHHHHHHHHTTC
T ss_pred HHhccCCCCceEEECCCCCeeHHHHHHHHHHHhCC
Confidence 999965556699987 4789999999999999875
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-40 Score=283.58 Aligned_cols=254 Identities=17% Similarity=0.156 Sum_probs=200.0
Q ss_pred Ccchh-ccCCCeEEEeCCchHHHHHHHHHHHH--CCCEEEEEEcCCCCc-------chhhhhhhccCCCCcEEEEEcCCC
Q 023515 1 MSSVA-AAAGKVVCVTGASGYIASWLVKLLLS--RGYTVKASVRDPNDP-------KKTRHLLALDGASERLQLFKANLL 70 (281)
Q Consensus 1 ~~~~~-~~~~~~ilItGatG~iG~~l~~~L~~--~g~~V~~~~r~~~~~-------~~~~~~~~~~~~~~~~~~~~~D~~ 70 (281)
|+.|. .+++|+|||||||||||++++++|++ +|++|++++|..... +.+...... ...++.++++|++
T Consensus 1 M~~~~~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~ 78 (362)
T 3sxp_A 1 MRYIDDELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNL--IGFKGEVIAADIN 78 (362)
T ss_dssp CCSSSCCCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGG--TTCCSEEEECCTT
T ss_pred CcccchhcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhc--cccCceEEECCCC
Confidence 44443 36689999999999999999999999 999999999976521 111111111 1246799999999
Q ss_pred CcCcHHHH-hcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeee
Q 023515 71 EEGSFDSI-VDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (281)
Q Consensus 71 ~~~~~~~~-~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (281)
|++++.++ ..++|+|||+||.... ....++..+++|+.++.+++++|++. +.+ |||+||.++|. .. ..++
T Consensus 79 d~~~~~~~~~~~~D~vih~A~~~~~-~~~~~~~~~~~Nv~gt~~ll~aa~~~-~~~-~V~~SS~~vyg-~~-----~~~~ 149 (362)
T 3sxp_A 79 NPLDLRRLEKLHFDYLFHQAAVSDT-TMLNQELVMKTNYQAFLNLLEIARSK-KAK-VIYASSAGVYG-NT-----KAPN 149 (362)
T ss_dssp CHHHHHHHTTSCCSEEEECCCCCGG-GCCCHHHHHHHHTHHHHHHHHHHHHT-TCE-EEEEEEGGGGC-SC-----CSSB
T ss_pred CHHHHHHhhccCCCEEEECCccCCc-cccCHHHHHHHHHHHHHHHHHHHHHc-CCc-EEEeCcHHHhC-CC-----CCCC
Confidence 99999998 7799999999997554 34556699999999999999999997 666 99999977664 21 1267
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCC---CccHHHHHHHHhCCC--CC-
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL---NTSAAAVLSLIKGAQ--TY- 223 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~---~~~~~~~~~~~~~~~--~~- 223 (281)
+|+++..|. ++|+.+|.++|.+++.++.+ ++++++||+++|||+..+.. .....++.....+.+ .+
T Consensus 150 ~E~~~~~p~------~~Y~~sK~~~E~~~~~~~~~--~~~~~lR~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (362)
T 3sxp_A 150 VVGKNESPE------NVYGFSKLCMDEFVLSHSND--NVQVGLRYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLFE 221 (362)
T ss_dssp CTTSCCCCS------SHHHHHHHHHHHHHHHTTTT--SCEEEEEECSEESTTCGGGGGGSCHHHHHHHHHHTTSEEECSG
T ss_pred CCCCCCCCC------ChhHHHHHHHHHHHHHHhcc--CCEEEEEeCceeCcCCCCCCcchhHHHHHHHHHHhCCCeEEEC
Confidence 888776653 67999999999999988765 89999999999999865431 223445556666652 32
Q ss_pred -CCCCccceeHHHHHHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCC
Q 023515 224 -PNVTFGWVNVKDVANAHIQAFEVPSANGRYCLV-ERVSHYSEIVNIIRELYP 274 (281)
Q Consensus 224 -~~~~~~~i~~~D~a~~i~~~~~~~~~~g~~~~~-~~~~t~~e~~~~i~~~~~ 274 (281)
+.+.++|+|++|+|++++.+++++.. |+||++ ++.+++.|+++.+.+.+|
T Consensus 222 ~g~~~~~~i~v~Dva~ai~~~~~~~~~-g~~~i~~~~~~s~~e~~~~i~~~~g 273 (362)
T 3sxp_A 222 FGEQLRDFVYIEDVIQANVKAMKAQKS-GVYNVGYSQARSYNEIVSILKEHLG 273 (362)
T ss_dssp GGCCEEECEEHHHHHHHHHHHTTCSSC-EEEEESCSCEEEHHHHHHHHHHHHC
T ss_pred CCCeEEccEEHHHHHHHHHHHHhcCCC-CEEEeCCCCCccHHHHHHHHHHHcC
Confidence 46789999999999999999998764 599986 578999999999999988
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-40 Score=287.76 Aligned_cols=257 Identities=17% Similarity=0.234 Sum_probs=198.8
Q ss_pred hhccCCCeEEEeCCchHHHHHHHHHHHHC-CCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCC-CcCcHHHHhcC
Q 023515 4 VAAAAGKVVCVTGASGYIASWLVKLLLSR-GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLL-EEGSFDSIVDG 81 (281)
Q Consensus 4 ~~~~~~~~ilItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~ 81 (281)
|..|+||+|||||||||||++|+++|+++ |++|++++|+..+...+.. ..+++++++|++ |.+.+.+++++
T Consensus 19 ~~~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~-------~~~v~~~~~Dl~~d~~~~~~~~~~ 91 (372)
T 3slg_A 19 PGSMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVK-------HERMHFFEGDITINKEWVEYHVKK 91 (372)
T ss_dssp ----CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGG-------STTEEEEECCTTTCHHHHHHHHHH
T ss_pred CcccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhcc-------CCCeEEEeCccCCCHHHHHHHhcc
Confidence 55567899999999999999999999998 8999999998765444222 147999999999 88999999999
Q ss_pred CcEeEEecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhh
Q 023515 82 CDGVCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVC 160 (281)
Q Consensus 82 ~d~Vih~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 160 (281)
+|+|||+|+..... ........+++|+.++.+++++|++. + ++|||+||.++|. . ....+++|++.+.+..+
T Consensus 92 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~-~-~~~v~~SS~~vyg-~----~~~~~~~e~~~~~~~~p 164 (372)
T 3slg_A 92 CDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKY-G-KHLVFPSTSEVYG-M----CADEQFDPDASALTYGP 164 (372)
T ss_dssp CSEEEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHH-T-CEEEEECCGGGGB-S----CCCSSBCTTTCCEEECC
T ss_pred CCEEEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHh-C-CcEEEeCcHHHhC-C----CCCCCCCccccccccCC
Confidence 99999999974421 11233478899999999999999998 6 8999999987664 2 12345566654421111
Q ss_pred -ccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCC-------CccHHHHHHHHhCCC--CC--CCCCc
Q 023515 161 -KQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL-------NTSAAAVLSLIKGAQ--TY--PNVTF 228 (281)
Q Consensus 161 -~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~-------~~~~~~~~~~~~~~~--~~--~~~~~ 228 (281)
..+.+.|+.+|.++|.+++.++++ |++++++||+++|||...+.. .....++..+..+.+ .. +++.+
T Consensus 165 ~~~p~~~Y~~sK~~~E~~~~~~~~~-g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 243 (372)
T 3slg_A 165 INKPRWIYACSKQLMDRVIWGYGME-GLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLVDGGSQKR 243 (372)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHHTT-TCEEEEEEECSEECSSCCCTTCSBSCSCHHHHHHHHHHHHTCCEEEGGGGCCEE
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHC-CCCEEEEccccccCCCcccccccccccchHHHHHHHHHHcCCCcEEeCCCceEE
Confidence 123457999999999999999887 999999999999999865321 123445566666663 22 47889
Q ss_pred cceeHHHHHHHHHHhhcCCC---CCccEEEec--CCCCHHHHHHHHHHhCCC
Q 023515 229 GWVNVKDVANAHIQAFEVPS---ANGRYCLVE--RVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 229 ~~i~~~D~a~~i~~~~~~~~---~~g~~~~~~--~~~t~~e~~~~i~~~~~~ 275 (281)
+|+|++|+|++++.+++++. .+++||+++ +.+|+.|+++.+.+.+|.
T Consensus 244 ~~i~v~Dva~a~~~~~~~~~~~~~~~~~ni~~~~~~~s~~e~~~~i~~~~g~ 295 (372)
T 3slg_A 244 AFTYVDDGISALMKIIENSNGVATGKIYNIGNPNNNFSVRELANKMLELAAE 295 (372)
T ss_dssp ECEEHHHHHHHHHHHHHCGGGTTTTEEEEECCTTCEEEHHHHHHHHHHHHHH
T ss_pred EEEEHHHHHHHHHHHHhcccCcCCCceEEeCCCCCCccHHHHHHHHHHHhCC
Confidence 99999999999999999874 456999986 489999999999998763
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-39 Score=274.27 Aligned_cols=242 Identities=19% Similarity=0.216 Sum_probs=195.1
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEec
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a 89 (281)
|+|||||||||||++|+++|+++|++|++++|......... ..+++++.+|++|.+ +.+++++ |+|||+|
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~--------~~~~~~~~~Dl~d~~-~~~~~~~-d~vih~A 70 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFV--------NPSAELHVRDLKDYS-WGAGIKG-DVVFHFA 70 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGGGS--------CTTSEEECCCTTSTT-TTTTCCC-SEEEECC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchhhc--------CCCceEEECccccHH-HHhhcCC-CEEEECC
Confidence 57999999999999999999999999999999876543311 246899999999988 8888888 9999999
Q ss_pred ccCC-CCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchhh
Q 023515 90 SPFY-HDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYP 168 (281)
Q Consensus 90 ~~~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~ 168 (281)
+... ......++..+++|+.++.+++++|++. ++++|||+||.++|.. ....+++|+.+..| .+.|+
T Consensus 71 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~iv~~SS~~vyg~-----~~~~~~~e~~~~~p------~~~Y~ 138 (312)
T 3ko8_A 71 ANPEVRLSTTEPIVHFNENVVATFNVLEWARQT-GVRTVVFASSSTVYGD-----ADVIPTPEEEPYKP------ISVYG 138 (312)
T ss_dssp SSCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEGGGGCS-----CSSSSBCTTSCCCC------CSHHH
T ss_pred CCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEeCcHHHhCC-----CCCCCCCCCCCCCC------CChHH
Confidence 9633 2233455688999999999999999998 7889999999877652 23456777776654 36799
Q ss_pred hhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCC---CC--CCCCccceeHHHHHHHHHHh
Q 023515 169 LSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ---TY--PNVTFGWVNVKDVANAHIQA 243 (281)
Q Consensus 169 ~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~i~~~D~a~~i~~~ 243 (281)
.+|.++|.+++.+++++|++++++||+++|||.... ......+.....+.. .+ +.+.++|+|++|+|++++.+
T Consensus 139 ~sK~~~e~~~~~~~~~~g~~~~~lrp~~v~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~ 216 (312)
T 3ko8_A 139 AAKAAGEVMCATYARLFGVRCLAVRYANVVGPRLRH--GVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAA 216 (312)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCS--SHHHHHHHHHHHCTTEEEEC----CEECEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEeeccccCcCCCC--ChHHHHHHHHHhCCCCeEEcCCCCeEEeeEEHHHHHHHHHHH
Confidence 999999999999999889999999999999998653 234455566665531 23 46889999999999999999
Q ss_pred hcC---C-CCCccEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 244 FEV---P-SANGRYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 244 ~~~---~-~~~g~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
+++ . ..+++||++ ++.+++.|+++.+.+.+|.
T Consensus 217 ~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~ 253 (312)
T 3ko8_A 217 WKKFEEMDAPFLALNVGNVDAVRVLDIAQIVAEVLGL 253 (312)
T ss_dssp HHHHHHSCCSEEEEEESCSSCEEHHHHHHHHHHHHTC
T ss_pred HHhccccCCCCcEEEEcCCCceeHHHHHHHHHHHhCC
Confidence 987 3 334589987 4789999999999999864
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-39 Score=276.64 Aligned_cols=248 Identities=19% Similarity=0.218 Sum_probs=191.6
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 87 (281)
++|+|||||||||||++++++|+++|++|++++|+..+...+.. .+++++++|++|++++.++++++|+|||
T Consensus 12 ~~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~--------~~~~~~~~Dl~d~~~~~~~~~~~d~vih 83 (342)
T 2x4g_A 12 AHVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAY--------LEPECRVAEMLDHAGLERALRGLDGVIF 83 (342)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGG--------GCCEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhcc--------CCeEEEEecCCCHHHHHHHHcCCCEEEE
Confidence 35689999999999999999999999999999998765433221 2688999999999999999999999999
Q ss_pred ecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchh
Q 023515 88 TASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWY 167 (281)
Q Consensus 88 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y 167 (281)
+|+.... ....++..+++|+.++.+++++|.+. ++++|||+||.+++.... ....+ +|+++..|... ..+.|
T Consensus 84 ~a~~~~~-~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~v~~SS~~~~~~~~---~~~~~-~E~~~~~p~~~--~~~~Y 155 (342)
T 2x4g_A 84 SAGYYPS-RPRRWQEEVASALGQTNPFYAACLQA-RVPRILYVGSAYAMPRHP---QGLPG-HEGLFYDSLPS--GKSSY 155 (342)
T ss_dssp C-------------CHHHHHHHHHHHHHHHHHHH-TCSCEEEECCGGGSCCCT---TSSCB-CTTCCCSSCCT--TSCHH
T ss_pred CCccCcC-CCCCHHHHHHHHHHHHHHHHHHHHHc-CCCeEEEECCHHhhCcCC---CCCCC-CCCCCCCcccc--ccChH
Confidence 9997542 23455688999999999999999998 788999999988765221 11123 77777665100 13679
Q ss_pred hhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCC-CCCCCccHHHHHHHHhCCC-CCCCCCccceeHHHHHHHHHHhhc
Q 023515 168 PLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLL-QPTLNTSAAAVLSLIKGAQ-TYPNVTFGWVNVKDVANAHIQAFE 245 (281)
Q Consensus 168 ~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~D~a~~i~~~~~ 245 (281)
+.+|.++|.+++.+++. |++++++||+.+|||.. .+. ....+..+..+.+ ..+++.++|+|++|+|++++.+++
T Consensus 156 ~~sK~~~e~~~~~~~~~-g~~~~ilrp~~v~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~ 231 (342)
T 2x4g_A 156 VLCKWALDEQAREQARN-GLPVVIGIPGMVLGELDIGPT---TGRVITAIGNGEMTHYVAGQRNVIDAAEAGRGLLMALE 231 (342)
T ss_dssp HHHHHHHHHHHHHHHHT-TCCEEEEEECEEECSCCSSCS---TTHHHHHHHTTCCCEEECCEEEEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc-CCcEEEEeCCceECCCCcccc---HHHHHHHHHcCCCccccCCCcceeeHHHHHHHHHHHHh
Confidence 99999999999999877 99999999999999976 321 3345555556552 226778899999999999999998
Q ss_pred CCCCCccEEEecCCCCHHHHHHHHHHhCCC
Q 023515 246 VPSANGRYCLVERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 246 ~~~~~g~~~~~~~~~t~~e~~~~i~~~~~~ 275 (281)
++..+++||++++.+|+.|+++.+.+.+|.
T Consensus 232 ~~~~g~~~~v~~~~~s~~e~~~~i~~~~g~ 261 (342)
T 2x4g_A 232 RGRIGERYLLTGHNLEMADLTRRIAELLGQ 261 (342)
T ss_dssp HSCTTCEEEECCEEEEHHHHHHHHHHHHTC
T ss_pred CCCCCceEEEcCCcccHHHHHHHHHHHhCC
Confidence 766656999975339999999999998875
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-38 Score=276.87 Aligned_cols=254 Identities=15% Similarity=0.111 Sum_probs=199.2
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 87 (281)
+||+|||||||||||++++++|+++|++|++++|+..+..... ..+++++++|++|.+++.++++++|+|||
T Consensus 28 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~--------~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih 99 (379)
T 2c5a_A 28 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTED--------MFCDEFHLVDLRVMENCLKVTEGVDHVFN 99 (379)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGG--------GTCSEEEECCTTSHHHHHHHHTTCSEEEE
T ss_pred cCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhc--------cCCceEEECCCCCHHHHHHHhCCCCEEEE
Confidence 5789999999999999999999999999999999875432211 13688999999999999999999999999
Q ss_pred ecccCCCC--CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCc
Q 023515 88 TASPFYHD--AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL 165 (281)
Q Consensus 88 ~a~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 165 (281)
+|+..... ....++..+++|+.++.+++++|++. ++++|||+||.+++...........+++|+++.. ..+.+
T Consensus 100 ~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~-~~~~~V~~SS~~v~~~~~~~~~~~~~~~E~~~~~----~~~~~ 174 (379)
T 2c5a_A 100 LAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARIN-GIKRFFYASSACIYPEFKQLETTNVSLKESDAWP----AEPQD 174 (379)
T ss_dssp CCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSS----BCCSS
T ss_pred CceecCcccccccCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEeehheeCCCCCCCccCCCcCcccCCC----CCCCC
Confidence 99975421 13455688999999999999999997 8889999999877653211111224566765211 11346
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCC---ccHHHHHHHHhCCC---CC--CCCCccceeHHHHH
Q 023515 166 WYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLN---TSAAAVLSLIKGAQ---TY--PNVTFGWVNVKDVA 237 (281)
Q Consensus 166 ~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~---~~~~~~~~~~~~~~---~~--~~~~~~~i~~~D~a 237 (281)
.|+.+|.++|.+++.+++++|++++++||+.+|||....... ....++..+..+.+ .+ +.+.++|+|++|+|
T Consensus 175 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva 254 (379)
T 2c5a_A 175 AFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECV 254 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHCCCEEEEEeCceeCcCCCcccccccHHHHHHHHHHhCCCceEEeCCCCeeEEEEEHHHHH
Confidence 799999999999999988889999999999999997653221 23445555656643 12 46788999999999
Q ss_pred HHHHHhhcCCCCCccEEEec-CCCCHHHHHHHHHHhCCC
Q 023515 238 NAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 238 ~~i~~~~~~~~~~g~~~~~~-~~~t~~e~~~~i~~~~~~ 275 (281)
++++.+++++ .++.||+++ +.+|+.|+++.+.+.+|.
T Consensus 255 ~ai~~~l~~~-~~~~~ni~~~~~~s~~e~~~~i~~~~g~ 292 (379)
T 2c5a_A 255 EGVLRLTKSD-FREPVNIGSDEMVSMNEMAEMVLSFEEK 292 (379)
T ss_dssp HHHHHHHHSS-CCSCEEECCCCCEEHHHHHHHHHHTTTC
T ss_pred HHHHHHhhcc-CCCeEEeCCCCccCHHHHHHHHHHHhCC
Confidence 9999999876 456899874 789999999999999874
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-40 Score=278.20 Aligned_cols=247 Identities=19% Similarity=0.180 Sum_probs=195.4
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHC--CCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--CCcE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSR--GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDG 84 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~ 84 (281)
+|+|||||||||||++++++|+++ |++|++++|+..+... . .+++++.+|++|.+++.++++ ++|+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~-~---------~~~~~~~~D~~d~~~~~~~~~~~~~d~ 71 (312)
T 2yy7_A 2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDV-V---------NSGPFEVVNALDFNQIEHLVEVHKITD 71 (312)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCHH-H---------HSSCEEECCTTCHHHHHHHHHHTTCCE
T ss_pred CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCccccc-c---------CCCceEEecCCCHHHHHHHHhhcCCCE
Confidence 568999999999999999999998 8999999998755321 0 246789999999999999998 8999
Q ss_pred eEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCC
Q 023515 85 VCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSE 164 (281)
Q Consensus 85 Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 164 (281)
|||+|+.........++..+++|+.++.+++++|++. ++++|||+||.+++... ....+.+|+.+..| .
T Consensus 72 vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~SS~~~~~~~----~~~~~~~e~~~~~~------~ 140 (312)
T 2yy7_A 72 IYLMAALLSATAEKNPAFAWDLNMNSLFHVLNLAKAK-KIKKIFWPSSIAVFGPT----TPKENTPQYTIMEP------S 140 (312)
T ss_dssp EEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHTT-SCSEEECCEEGGGCCTT----SCSSSBCSSCBCCC------C
T ss_pred EEECCccCCCchhhChHHHHHHHHHHHHHHHHHHHHc-CCCEEEEeccHHHhCCC----CCCCCccccCcCCC------C
Confidence 9999987443212344588999999999999999997 88899999998776522 12235667665543 3
Q ss_pred chhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCC---ccHHHHHHHHhCC--C--CCCCCCccceeHHHHH
Q 023515 165 LWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLN---TSAAAVLSLIKGA--Q--TYPNVTFGWVNVKDVA 237 (281)
Q Consensus 165 ~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~---~~~~~~~~~~~~~--~--~~~~~~~~~i~~~D~a 237 (281)
+.|+.+|.++|.+++.+++++|++++++||+.+|||...+... .....+.+...+. . ..+++.++|+|++|+|
T Consensus 141 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva 220 (312)
T 2yy7_A 141 TVYGISKQAGERWCEYYHNIYGVDVRSIRYPGLISWSTPPGGGTTDYAVDIFYKAIADKKYECFLSSETKMPMMYMDDAI 220 (312)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCEEECEEECEEECSSSCCCSCTTTHHHHHHHHHHHTSEEEESSCTTCCEEEEEHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHhcCCcEEEEeCCeEecCCCCCCCchhhhHHHHHHHHHcCCCeEEecCCCceeeeeeHHHHH
Confidence 6799999999999999988889999999999999987543321 2233334433333 2 2357889999999999
Q ss_pred HHHHHhhcCCCC----CccEEEecCCCCHHHHHHHHHHhCCCC
Q 023515 238 NAHIQAFEVPSA----NGRYCLVERVSHYSEIVNIIRELYPAF 276 (281)
Q Consensus 238 ~~i~~~~~~~~~----~g~~~~~~~~~t~~e~~~~i~~~~~~~ 276 (281)
++++.+++++.. +++||++++.+|+.|+++.+.+.+|..
T Consensus 221 ~a~~~~~~~~~~~~~~~~~~ni~~~~~s~~e~~~~i~~~~~~~ 263 (312)
T 2yy7_A 221 DATINIMKAPVEKIKIHSSYNLAAMSFTPTEIANEIKKHIPEF 263 (312)
T ss_dssp HHHHHHHHSCGGGCCCSSCEECCSEEECHHHHHHHHHTTCTTC
T ss_pred HHHHHHHhCcccccccCceEEeCCCccCHHHHHHHHHHHCCCC
Confidence 999999987653 268999888899999999999998853
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=281.10 Aligned_cols=246 Identities=18% Similarity=0.228 Sum_probs=195.2
Q ss_pred hccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcE
Q 023515 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (281)
Q Consensus 5 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~ 84 (281)
...++|+|||||||||||++|+++|+++|++|++++|+... .+++++++|++|.+.+.++++++|+
T Consensus 15 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~--------------~~~~~~~~Dl~d~~~~~~~~~~~d~ 80 (347)
T 4id9_A 15 VPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG--------------TGGEEVVGSLEDGQALSDAIMGVSA 80 (347)
T ss_dssp ------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS--------------SCCSEEESCTTCHHHHHHHHTTCSE
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC--------------CCccEEecCcCCHHHHHHHHhCCCE
Confidence 34568899999999999999999999999999999998754 2578899999999999999999999
Q ss_pred eEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCC
Q 023515 85 VCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSE 164 (281)
Q Consensus 85 Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 164 (281)
|||+|+...... ..++..+++|+.++.+++++|++. ++++|||+||.++|... .....+++|+++..| .
T Consensus 81 vih~A~~~~~~~-~~~~~~~~~nv~~~~~ll~a~~~~-~~~~~V~~SS~~vyg~~---~~~~~~~~E~~~~~~------~ 149 (347)
T 4id9_A 81 VLHLGAFMSWAP-ADRDRMFAVNVEGTRRLLDAASAA-GVRRFVFASSGEVYPEN---RPEFLPVTEDHPLCP------N 149 (347)
T ss_dssp EEECCCCCCSSG-GGHHHHHHHHTHHHHHHHHHHHHT-TCSEEEEEEEGGGTTTT---SCSSSSBCTTSCCCC------C
T ss_pred EEECCcccCcch-hhHHHHHHHHHHHHHHHHHHHHHc-CCCeEEEECCHHHhCCC---CCCCCCcCCCCCCCC------C
Confidence 999999754332 233689999999999999999997 88999999998776421 123456788877654 3
Q ss_pred chhhhhHHHHHHHHHHHHHhcCCcEEEEcCCccc-------------CCCCCCC----------CCccHHHHHHHHhCCC
Q 023515 165 LWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVI-------------GPLLQPT----------LNTSAAAVLSLIKGAQ 221 (281)
Q Consensus 165 ~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~-------------g~~~~~~----------~~~~~~~~~~~~~~~~ 221 (281)
+.|+.+|.++|.+++.++++++++++++||+.+| ||...+. ......++.....+.+
T Consensus 150 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~~~~~~~~~~~~~~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (347)
T 4id9_A 150 SPYGLTKLLGEELVRFHQRSGAMETVILRFSHTQDATELLDEDSFFSGPRFFLRPRIHQQQNFGNAAIAELLQSRDIGEP 229 (347)
T ss_dssp SHHHHHHHHHHHHHHHHHHHSSSEEEEEEECEEECGGGTTCTTSSSHHHHHBHHHHHHHHHHHTCHHHHHHHHHHCCSSC
T ss_pred ChHHHHHHHHHHHHHHHHHhcCCceEEEccceEeecccccccccccCCCCcccccccccccccchhHHHHHHHHHHcCCC
Confidence 6799999999999999999999999999999999 6653221 1122233444444443
Q ss_pred C----CCCCCccc----eeHHHHHHHHHHhhcCCC-CCccEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 222 T----YPNVTFGW----VNVKDVANAHIQAFEVPS-ANGRYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 222 ~----~~~~~~~~----i~~~D~a~~i~~~~~~~~-~~g~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
. .+++.++| +|++|+|++++.+++++. .+++||++ ++.+|+.|+++.+.+.+|.
T Consensus 230 ~~~~g~~~~~~~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~ 293 (347)
T 4id9_A 230 SHILARNENGRPFRMHITDTRDMVAGILLALDHPEAAGGTFNLGADEPADFAALLPKIAALTGL 293 (347)
T ss_dssp CEEEEECTTCCBCEECEEEHHHHHHHHHHHHHCGGGTTEEEEESCSSCEEHHHHHHHHHHHHCC
T ss_pred eEEeCCCCcccCCccCcEeHHHHHHHHHHHhcCcccCCCeEEECCCCcccHHHHHHHHHHHhCC
Confidence 1 25778899 999999999999999874 45699997 5789999999999999875
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-39 Score=276.97 Aligned_cols=254 Identities=19% Similarity=0.202 Sum_probs=197.1
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhh-hccCCCCcEEEEEcCCCCcCcHHHHhc--CCcE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLL-ALDGASERLQLFKANLLEEGSFDSIVD--GCDG 84 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~ 84 (281)
++|+|||||||||||++++++|+++|++|++++|+........... ... ..++.++++|++|++++.++++ ++|+
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKIT--GKTPAFHETDVSDERALARIFDAHPITA 81 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHH--SCCCEEECCCTTCHHHHHHHHHHSCCCE
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhc--CCCceEEEeecCCHHHHHHHHhccCCcE
Confidence 4679999999999999999999999999999999876544322211 111 2468999999999999999998 8999
Q ss_pred eEEecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccC
Q 023515 85 VCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQS 163 (281)
Q Consensus 85 Vih~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 163 (281)
|||+||..... ..+.....+++|+.++.+++++|++. +.++|||+||..++. . ....+++|+.+..|
T Consensus 82 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv~~SS~~~~g-~----~~~~~~~e~~~~~~------ 149 (341)
T 3enk_A 82 AIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRER-AVKRIVFSSSATVYG-V----PERSPIDETFPLSA------ 149 (341)
T ss_dssp EEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEEEEGGGBC-S----CSSSSBCTTSCCBC------
T ss_pred EEECccccccCccccChHHHHHHHHHHHHHHHHHHHhC-CCCEEEEEecceEec-C----CCCCCCCCCCCCCC------
Confidence 99999874321 11223478899999999999999998 788999999987764 2 23445777776554
Q ss_pred CchhhhhHHHHHHHHHHHHHhcC-CcEEEEcCCcccCCCCCCCC--------CccHHHHHHHHhCC-C---C--------
Q 023515 164 ELWYPLSKTLAEDAAWKFAKEKS-IDLVTINPAMVIGPLLQPTL--------NTSAAAVLSLIKGA-Q---T-------- 222 (281)
Q Consensus 164 ~~~Y~~sK~~~e~~~~~~~~~~g-~~~~~irp~~v~g~~~~~~~--------~~~~~~~~~~~~~~-~---~-------- 222 (281)
.+.|+.+|.++|.+++.++++++ ++++++||+++|||...... ......+.+...+. + .
T Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 229 (341)
T 3enk_A 150 TNPYGQTKLMAEQILRDVEAADPSWRVATLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTP 229 (341)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCSSHHHHHHHHHHTSSSCEEEECSCSSST
T ss_pred CChhHHHHHHHHHHHHHHhhcCCCceEEEEeeccccCCccccccCCCcccCccchHHHHHHHHhcCCCceEEeCCccCCC
Confidence 36799999999999999988876 99999999999999642111 22233444444442 1 1
Q ss_pred CCCCCccceeHHHHHHHHHHhhcCC---CCCccEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 223 YPNVTFGWVNVKDVANAHIQAFEVP---SANGRYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 223 ~~~~~~~~i~~~D~a~~i~~~~~~~---~~~g~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
.+++.++|+|++|+|++++.++++. ..+++||++ ++.+|+.|+++.+.+.+|.
T Consensus 230 ~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~ 286 (341)
T 3enk_A 230 DGTGVRDYIHVVDLARGHIAALDALERRDASLTVNLGTGRGYSVLEVVRAFEKASGR 286 (341)
T ss_dssp TSSCEECEEEHHHHHHHHHHHHHHHHHHTSCEEEEESCSCCEEHHHHHHHHHHHHCS
T ss_pred CCCeeEeeEEHHHHHHHHHHHHHhhhcCCcceEEEeCCCCceeHHHHHHHHHHHhCC
Confidence 3578899999999999999999862 345699996 5789999999999999874
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-38 Score=270.41 Aligned_cols=267 Identities=29% Similarity=0.467 Sum_probs=200.4
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEE-EcCCCCcCcHHHHhcCCcE
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLF-KANLLEEGSFDSIVDGCDG 84 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~d~ 84 (281)
.+++|+|||||||||||++++++|+++|++|++++|+..+...+........ ..+++++ .+|++|.+.+.++++++|+
T Consensus 8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~~~d~ 86 (342)
T 1y1p_A 8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKY-PGRFETAVVEDMLKQGAYDEVIKGAAG 86 (342)
T ss_dssp SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHS-TTTEEEEECSCTTSTTTTTTTTTTCSE
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccC-CCceEEEEecCCcChHHHHHHHcCCCE
Confidence 3568899999999999999999999999999999997654333322211100 1368888 8999999999999999999
Q ss_pred eEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChh------
Q 023515 85 VCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPE------ 158 (281)
Q Consensus 85 Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~------ 158 (281)
|||+||..... ..++..+++|+.++.+++++|.+..++++|||+||.++++... +.....+++|+++....
T Consensus 87 vih~A~~~~~~--~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~~~~~~~~-~~~~~~~~~E~~~~~~~~~~~~~ 163 (342)
T 1y1p_A 87 VAHIASVVSFS--NKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPK-PNVEGIYLDEKSWNLESIDKAKT 163 (342)
T ss_dssp EEECCCCCSCC--SCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCC-TTCCCCEECTTCCCHHHHHHHHH
T ss_pred EEEeCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccHHHhcCCC-CCCCCcccCccccCchhhhhhcc
Confidence 99999975432 3456899999999999999998533678999999987765221 11122567887642110
Q ss_pred ----hhccCCchhhhhHHHHHHHHHHHHHhc--CCcEEEEcCCcccCCCCCCCCC--ccHHHHHHHHhCCCC--CC-CCC
Q 023515 159 ----VCKQSELWYPLSKTLAEDAAWKFAKEK--SIDLVTINPAMVIGPLLQPTLN--TSAAAVLSLIKGAQT--YP-NVT 227 (281)
Q Consensus 159 ----~~~~~~~~Y~~sK~~~e~~~~~~~~~~--g~~~~~irp~~v~g~~~~~~~~--~~~~~~~~~~~~~~~--~~-~~~ 227 (281)
.+..+.+.|+.+|.++|.+++.+++++ +++++++||+.+|||...+... ....++..+..+.+. .+ .+.
T Consensus 164 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~rp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (342)
T 1y1p_A 164 LPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALMPP 243 (342)
T ss_dssp SCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHHHHTCCS
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceECCCCCCCCCCccHHHHHHHHHcCCCccccccCCc
Confidence 001123569999999999999998775 7899999999999998654321 344555566666532 22 267
Q ss_pred ccceeHHHHHHHHHHhhcCCCCCc-cEEEecCCCCHHHHHHHHHHhCCCC
Q 023515 228 FGWVNVKDVANAHIQAFEVPSANG-RYCLVERVSHYSEIVNIIRELYPAF 276 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~~~g-~~~~~~~~~t~~e~~~~i~~~~~~~ 276 (281)
++|+|++|+|++++.+++++...| .++++++.+|+.|+++.+.+.+|..
T Consensus 244 ~~~v~v~Dva~a~~~~~~~~~~~g~~~~~~g~~~s~~e~~~~i~~~~~~~ 293 (342)
T 1y1p_A 244 QYYVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSK 293 (342)
T ss_dssp EEEEEHHHHHHHHHHHHHCTTCCSCEEEECCEEECHHHHHHHHHHHCTTS
T ss_pred CCEeEHHHHHHHHHHHHcCcccCCceEEEeCCCCCHHHHHHHHHHHCCCc
Confidence 899999999999999998765545 4555677899999999999999854
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=275.38 Aligned_cols=255 Identities=16% Similarity=0.174 Sum_probs=199.4
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCc-chhhhhhhccC--CCCcEEEEEcCCCCcCcHHHHhcCCc
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP-KKTRHLLALDG--ASERLQLFKANLLEEGSFDSIVDGCD 83 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~d 83 (281)
++||+|||||||||||++++++|+++|++|++++|+.... ..+..+..... ...+++++++|++|.+++.++++++|
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d 104 (352)
T 1sb8_A 25 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVD 104 (352)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCS
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCCC
Confidence 5688999999999999999999999999999999976432 22222111000 01468999999999999999999999
Q ss_pred EeEEecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhcc
Q 023515 84 GVCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQ 162 (281)
Q Consensus 84 ~Vih~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 162 (281)
+|||+|+..... ....++..+++|+.++.+++++|.+. ++++|||+||.+++... ...+++|+++..|
T Consensus 105 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~v~~SS~~~~~~~-----~~~~~~E~~~~~~----- 173 (352)
T 1sb8_A 105 YVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDA-KVQSFTYAASSSTYGDH-----PGLPKVEDTIGKP----- 173 (352)
T ss_dssp EEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-TCSEEEEEEEGGGGTTC-----CCSSBCTTCCCCC-----
T ss_pred EEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEeccHHhcCCC-----CCCCCCCCCCCCC-----
Confidence 999999864311 11234578899999999999999998 88999999998776421 2345678877654
Q ss_pred CCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCC---CccHHHHHHHHhCCCC----CCCCCccceeHHH
Q 023515 163 SELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL---NTSAAAVLSLIKGAQT----YPNVTFGWVNVKD 235 (281)
Q Consensus 163 ~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~i~~~D 235 (281)
.+.|+.+|.++|.+++.+++++|++++++||+.+|||...+.. .....++..+..+.+. .+++.++|+|++|
T Consensus 174 -~~~Y~~sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~D 252 (352)
T 1sb8_A 174 -LSPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIEN 252 (352)
T ss_dssp -CSHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHH
T ss_pred -CChhHHHHHHHHHHHHHHHHHcCCCEEEEEECceeCcCCCCCcchhhHHHHHHHHHHCCCCcEEeCCCCceEeeEEHHH
Confidence 3679999999999999998888999999999999999865431 1233455556666532 2467889999999
Q ss_pred HHHHHHHhhcCC--CCCccEEEe-cCCCCHHHHHHHHHHhC
Q 023515 236 VANAHIQAFEVP--SANGRYCLV-ERVSHYSEIVNIIRELY 273 (281)
Q Consensus 236 ~a~~i~~~~~~~--~~~g~~~~~-~~~~t~~e~~~~i~~~~ 273 (281)
+|++++.++.+. ..+++||++ ++.+|+.|+++.+.+.+
T Consensus 253 va~a~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~ 293 (352)
T 1sb8_A 253 TVQANLLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGL 293 (352)
T ss_dssp HHHHHHHHHTCCGGGCSEEEEESCSCCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCceEEeCCCCCccHHHHHHHHHHHH
Confidence 999999998863 235589987 57899999999999998
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-39 Score=276.94 Aligned_cols=257 Identities=17% Similarity=0.098 Sum_probs=198.6
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcC--Cc
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG--CD 83 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~d 83 (281)
++++|+|||||||||||++|+++|+++|++|++++|+..+...+..... ...+++++++|++|++++.+++++ +|
T Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 82 (357)
T 1rkx_A 6 FWQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETAR---VADGMQSEIGDIRDQNKLLESIREFQPE 82 (357)
T ss_dssp HHTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTT---TTTTSEEEECCTTCHHHHHHHHHHHCCS
T ss_pred hhCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhc---cCCceEEEEccccCHHHHHHHHHhcCCC
Confidence 4568899999999999999999999999999999998765544332211 124689999999999999999885 89
Q ss_pred EeEEecccCCC-CCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhcc
Q 023515 84 GVCHTASPFYH-DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQ 162 (281)
Q Consensus 84 ~Vih~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 162 (281)
+|||+||.... .....++..+++|+.++.+++++|.+..++++|||+||.++|... ....+++|+++..|
T Consensus 83 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~vyg~~----~~~~~~~E~~~~~~----- 153 (357)
T 1rkx_A 83 IVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNK----EWIWGYRENEAMGG----- 153 (357)
T ss_dssp EEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCC----CSSSCBCTTSCBCC-----
T ss_pred EEEECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecCHHHhCCC----CcCCCCCCCCCCCC-----
Confidence 99999985321 112334588999999999999999987237899999998776421 11234566655443
Q ss_pred CCchhhhhHHHHHHHHHHHHHhc---------CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCC--C-CCCCCccc
Q 023515 163 SELWYPLSKTLAEDAAWKFAKEK---------SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--T-YPNVTFGW 230 (281)
Q Consensus 163 ~~~~Y~~sK~~~e~~~~~~~~~~---------g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~ 230 (281)
.+.|+.+|.++|.+++.++.++ |++++++||+.+|||...........++..+..+.+ . .+++.++|
T Consensus 154 -~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 232 (357)
T 1rkx_A 154 -YDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPW 232 (357)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSSCHHHHHHHHHHTTCCEECSCTTCEECC
T ss_pred -CCccHHHHHHHHHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCCCCccccHHHHHHHHHhcCCCEEECCCCCeecc
Confidence 3669999999999999998765 999999999999999754322334455555666653 1 25678899
Q ss_pred eeHHHHHHHHHHhhcC----C-CCCccEEEec---CCCCHHHHHHHHHHhCCC
Q 023515 231 VNVKDVANAHIQAFEV----P-SANGRYCLVE---RVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 231 i~~~D~a~~i~~~~~~----~-~~~g~~~~~~---~~~t~~e~~~~i~~~~~~ 275 (281)
+|++|+|++++.++++ + ..+++||+++ +.+|+.|+++.+.+.+|.
T Consensus 233 v~v~Dva~a~~~~~~~~~~~~~~~~~~~ni~~~~~~~~s~~e~~~~i~~~~g~ 285 (357)
T 1rkx_A 233 QHVLEPLSGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGE 285 (357)
T ss_dssp EETHHHHHHHHHHHHHHHHTCGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCT
T ss_pred EeHHHHHHHHHHHHHhhhhcCCCCCceEEECCCCCCcccHHHHHHHHHHHhCC
Confidence 9999999999999874 2 3456999974 579999999999999874
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-38 Score=271.52 Aligned_cols=250 Identities=18% Similarity=0.197 Sum_probs=194.5
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCC--CcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPN--DPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~ 84 (281)
+|+|||||||||||++++++|+++| ++|++++|... ....+..+. ...+++++++|++|.+.+.+++.++|+
T Consensus 3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~Dl~d~~~~~~~~~~~d~ 78 (336)
T 2hun_A 3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLE----DDPRYTFVKGDVADYELVKELVRKVDG 78 (336)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGTTTT----TCTTEEEEECCTTCHHHHHHHHHTCSE
T ss_pred CCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHhhhc----cCCceEEEEcCCCCHHHHHHHhhCCCE
Confidence 5689999999999999999999986 89999999752 222222111 124789999999999999999999999
Q ss_pred eEEecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCc-cEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhcc
Q 023515 85 VCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSI-KRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQ 162 (281)
Q Consensus 85 Vih~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 162 (281)
|||+||..... ....++.++++|+.++.+++++|.+. +. ++|||+||.++|... ...+++|+++..|
T Consensus 79 vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~-~~~~~iv~~SS~~vyg~~-----~~~~~~E~~~~~~----- 147 (336)
T 2hun_A 79 VVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRE-NPEVRFVHVSTDEVYGDI-----LKGSFTENDRLMP----- 147 (336)
T ss_dssp EEECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHH-CTTSEEEEEEEGGGGCCC-----SSSCBCTTBCCCC-----
T ss_pred EEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEeccHHHHCCC-----CCCCcCCCCCCCC-----
Confidence 99999974321 12234588999999999999999987 53 799999998766421 1345677766543
Q ss_pred CCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCC--C--CCCCCccceeHHHHHH
Q 023515 163 SELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--T--YPNVTFGWVNVKDVAN 238 (281)
Q Consensus 163 ~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~i~~~D~a~ 238 (281)
.+.|+.+|.++|.+++.++.++|++++++||+.+|||...+. ......+.....+.+ . .+.+.++|+|++|+|+
T Consensus 148 -~~~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~ 225 (336)
T 2hun_A 148 -SSPYSATKAASDMLVLGWTRTYNLNASITRCTNNYGPYQFPE-KLIPKTIIRASLGLKIPIYGTGKNVRDWLYVEDHVR 225 (336)
T ss_dssp -CSHHHHHHHHHHHHHHHHHHHTTCEEEEEEECEEESTTCCTT-SHHHHHHHHHHTTCCEEEETC---CEEEEEHHHHHH
T ss_pred -CCccHHHHHHHHHHHHHHHHHhCCCEEEEeeeeeeCcCCCcC-chHHHHHHHHHcCCCceEeCCCCceeeeEEHHHHHH
Confidence 356999999999999999988999999999999999985432 223344555555552 2 2467789999999999
Q ss_pred HHHHhhcCCCCCccEEEec-CCCCHHHHHHHHHHhCCC
Q 023515 239 AHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 239 ~i~~~~~~~~~~g~~~~~~-~~~t~~e~~~~i~~~~~~ 275 (281)
+++.+++++..+++||+++ ..+|+.|+++.+.+.+|.
T Consensus 226 ~~~~~~~~~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~ 263 (336)
T 2hun_A 226 AIELVLLKGESREIYNISAGEEKTNLEVVKIILRLMGK 263 (336)
T ss_dssp HHHHHHHHCCTTCEEEECCSCEECHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCCCCEEEeCCCCcccHHHHHHHHHHHhCC
Confidence 9999998765556899975 679999999999999875
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-38 Score=268.96 Aligned_cols=246 Identities=15% Similarity=0.168 Sum_probs=194.6
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcC--CcEe
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG--CDGV 85 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~d~V 85 (281)
++|+|||||||||||++++++|+++|++|++++|+... .. + ++.++.+|++|++++.+++++ +|+|
T Consensus 11 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~---l--------~~~~~~~Dl~d~~~~~~~~~~~~~d~v 78 (321)
T 2pk3_A 11 GSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEA-KL---P--------NVEMISLDIMDSQRVKKVISDIKPDYI 78 (321)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTC-CC---T--------TEEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred CcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcc-cc---c--------eeeEEECCCCCHHHHHHHHHhcCCCEE
Confidence 47899999999999999999999999999999998654 11 1 588999999999999999885 9999
Q ss_pred EEecccCCC-CCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCC
Q 023515 86 CHTASPFYH-DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSE 164 (281)
Q Consensus 86 ih~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 164 (281)
||+||.... ...+.++..+++|+.++.+++++|....+.++|||+||.+++.... ....+++|+++..| .
T Consensus 79 ih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~---~~~~~~~E~~~~~~------~ 149 (321)
T 2pk3_A 79 FHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSEEYGMIL---PEESPVSEENQLRP------M 149 (321)
T ss_dssp EECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEGGGTBSCC---GGGCSBCTTSCCBC------C
T ss_pred EEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEccHHhcCCCC---CCCCCCCCCCCCCC------C
Confidence 999997442 1233456899999999999999997642578999999987764210 12345778776543 3
Q ss_pred chhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHh---C--CC--C--CCCCCccceeHHH
Q 023515 165 LWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIK---G--AQ--T--YPNVTFGWVNVKD 235 (281)
Q Consensus 165 ~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~---~--~~--~--~~~~~~~~i~~~D 235 (281)
+.|+.+|.++|.+++.+++++|++++++||+++|||..... .....++..+.. | .+ . .+.+.++|+|++|
T Consensus 150 ~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~v~D 228 (321)
T 2pk3_A 150 SPYGVSKASVGMLARQYVKAYGMDIIHTRTFNHIGPGQSLG-FVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRD 228 (321)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCTT-SHHHHHHHHHHHHHTTSSCSEEEESCSSCEEEEEEHHH
T ss_pred CccHHHHHHHHHHHHHHHHHcCCCEEEEEeCcccCcCCCCC-chHHHHHHHHHHHhcCCCCCeEEeCCCCcEEeeEEHHH
Confidence 67999999999999999888899999999999999986542 123334444444 5 22 2 2466789999999
Q ss_pred HHHHHHHhhcCCCCCccEEEec-CCCCHHHHHHHHHHhCCC
Q 023515 236 VANAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 236 ~a~~i~~~~~~~~~~g~~~~~~-~~~t~~e~~~~i~~~~~~ 275 (281)
+|++++.+++++..+++|++++ ..+++.|+++.+.+.+|.
T Consensus 229 va~a~~~~~~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~ 269 (321)
T 2pk3_A 229 IVQAYWLLSQYGKTGDVYNVCSGIGTRIQDVLDLLLAMANV 269 (321)
T ss_dssp HHHHHHHHHHHCCTTCEEEESCSCEEEHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHhCCCCCCeEEeCCCCCeeHHHHHHHHHHHhCC
Confidence 9999999998765556999875 689999999999999875
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-38 Score=268.48 Aligned_cols=251 Identities=18% Similarity=0.137 Sum_probs=196.4
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcc--hhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcC--Cc
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPK--KTRHLLALDGASERLQLFKANLLEEGSFDSIVDG--CD 83 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~d 83 (281)
++|+|||||||||||++++++|+++|++|++++|+..+.. .+..+ . ...+++++.+|++|++++.+++++ +|
T Consensus 13 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~---~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 88 (335)
T 1rpn_A 13 MTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLREL---G-IEGDIQYEDGDMADACSVQRAVIKAQPQ 88 (335)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHT---T-CGGGEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred cCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccccchhhc---c-ccCceEEEECCCCCHHHHHHHHHHcCCC
Confidence 4789999999999999999999999999999999875421 11111 0 124689999999999999998884 69
Q ss_pred EeEEecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCc-cEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhc
Q 023515 84 GVCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSI-KRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCK 161 (281)
Q Consensus 84 ~Vih~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 161 (281)
+|||+||..... ....++..+++|+.++.+++++|.+. ++ ++|||+||.++|... ...+++|+++..|
T Consensus 89 ~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~~v~~SS~~v~g~~-----~~~~~~E~~~~~p---- 158 (335)
T 1rpn_A 89 EVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQF-SPETRFYQASTSEMFGLI-----QAERQDENTPFYP---- 158 (335)
T ss_dssp EEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHH-CTTSEEEEEEEGGGGCSC-----SSSSBCTTSCCCC----
T ss_pred EEEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEEeCHHHhCCC-----CCCCCCcccCCCC----
Confidence 999999964321 12345588999999999999999997 64 899999998776421 2345778877654
Q ss_pred cCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCC--ccHHHHHHHHhCC-CC--C--CCCCccceeHH
Q 023515 162 QSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLN--TSAAAVLSLIKGA-QT--Y--PNVTFGWVNVK 234 (281)
Q Consensus 162 ~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~--~~~~~~~~~~~~~-~~--~--~~~~~~~i~~~ 234 (281)
.+.|+.+|.++|.+++.++++++++++++||+++|||....... .....+.....+. +. + +++.++|+|++
T Consensus 159 --~~~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~g~~~~~~i~v~ 236 (335)
T 1rpn_A 159 --RSPYGVAKLYGHWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAG 236 (335)
T ss_dssp --CSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEEECEEHH
T ss_pred --CChhHHHHHHHHHHHHHHHHHcCCcEEEEeeCcccCCCCCCCcchHHHHHHHHHHHcCCCceEEeCCCcceeceEEHH
Confidence 35799999999999999988889999999999999997543221 1233444455564 21 2 46789999999
Q ss_pred HHHHHHHHhhcCCCCCccEEEec-CCCCHHHHHHHHHHhCCC
Q 023515 235 DVANAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 235 D~a~~i~~~~~~~~~~g~~~~~~-~~~t~~e~~~~i~~~~~~ 275 (281)
|+|++++.+++++. .++||+++ +.+|+.|+++.+.+.+|.
T Consensus 237 Dva~a~~~~~~~~~-~~~~ni~~~~~~s~~e~~~~i~~~~g~ 277 (335)
T 1rpn_A 237 DYVEAMWLMLQQDK-ADDYVVATGVTTTVRDMCQIAFEHVGL 277 (335)
T ss_dssp HHHHHHHHHHHSSS-CCCEEECCSCEEEHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhcCC-CCEEEEeCCCCccHHHHHHHHHHHhCC
Confidence 99999999998765 47999874 679999999999999875
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-38 Score=274.67 Aligned_cols=252 Identities=20% Similarity=0.224 Sum_probs=192.0
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcE
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~ 84 (281)
.++||+|||||||||||++++++|+++| ++|++++|+...... .+. ...+++++++|++|++.+.++++++|+
T Consensus 29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~--~l~----~~~~v~~~~~Dl~d~~~l~~~~~~~d~ 102 (377)
T 2q1s_A 29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKI--NVP----DHPAVRFSETSITDDALLASLQDEYDY 102 (377)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGG--GSC----CCTTEEEECSCTTCHHHHHHCCSCCSE
T ss_pred HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchh--hcc----CCCceEEEECCCCCHHHHHHHhhCCCE
Confidence 3568899999999999999999999999 999999997654321 110 124789999999999999999999999
Q ss_pred eEEecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeee--cCC---CC-Ch
Q 023515 85 VCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVD--ETW---FS-DP 157 (281)
Q Consensus 85 Vih~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~--e~~---~~-~~ 157 (281)
|||+|+..... ....++..+++|+.++.+++++|++..++++|||+||.++|... ...+++ |++ +. .
T Consensus 103 Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS~~vyg~~-----~~~~~~~~E~~~~~~~~~- 176 (377)
T 2q1s_A 103 VFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEK-----TFDDAKATEETDIVSLHN- 176 (377)
T ss_dssp EEECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEEC-------------------CCCCCCCSSC-
T ss_pred EEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCHHHcCCC-----CCCCcCcccccccccccC-
Confidence 99999864321 11234578899999999999999885257899999998776421 223456 665 32 2
Q ss_pred hhhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCC---------CCC---CCccHHHHHHHHhCCC--CC
Q 023515 158 EVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLL---------QPT---LNTSAAAVLSLIKGAQ--TY 223 (281)
Q Consensus 158 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~---------~~~---~~~~~~~~~~~~~~~~--~~ 223 (281)
+.++|+.+|.++|.+++.+++++|++++++||+.+|||.. .+. ......++..+..+.+ ..
T Consensus 177 -----~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 251 (377)
T 2q1s_A 177 -----NDSPYSMSKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLE 251 (377)
T ss_dssp -----CCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCSSCCSSGGGTSCSHHHHHHHHHHTTCCCCCS
T ss_pred -----CCCchHHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCcccccccccCcccccccHHHHHHHHHHcCCCeEEe
Confidence 2356999999999999999888899999999999999986 211 1223445555666653 23
Q ss_pred --CCCCccceeHHHHHHH-HHHhhcCCCCCccEEEec-CCCCHHHHHHHHHHhCCC
Q 023515 224 --PNVTFGWVNVKDVANA-HIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 224 --~~~~~~~i~~~D~a~~-i~~~~~~~~~~g~~~~~~-~~~t~~e~~~~i~~~~~~ 275 (281)
+++.++|+|++|+|++ ++.+++++. .|+||+++ +.+|+.|+++.+.+.+|.
T Consensus 252 g~g~~~~~~i~v~Dva~a~i~~~~~~~~-~g~~~i~~~~~~s~~e~~~~i~~~~g~ 306 (377)
T 2q1s_A 252 NGGVATRDFIFVEDVANGLIACAADGTP-GGVYNIASGKETSIADLATKINEITGN 306 (377)
T ss_dssp GGGCCEECCEEHHHHHHHHHHHHHHCCT-TEEEECCCCCCEEHHHHHHHHHHHHTC
T ss_pred CCCCeEEeeEEHHHHHHHHHHHHHhcCC-CCeEEecCCCceeHHHHHHHHHHHhCC
Confidence 4678999999999999 999998766 45999875 789999999999999874
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-38 Score=268.18 Aligned_cols=247 Identities=17% Similarity=0.240 Sum_probs=192.2
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--CCcEeE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVC 86 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~Vi 86 (281)
||+|||||||||||++++++|+++|++|++++|....... .+ ..+++++++|++|.+.+.++++ ++|+||
T Consensus 1 M~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~------~~~~~~~~~D~~~~~~~~~~~~~~~~d~vi 72 (330)
T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHED--AI------TEGAKFYNGDLRDKAFLRDVFTQENIEAVM 72 (330)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGG--GS------CTTSEEEECCTTCHHHHHHHHHHSCEEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCchh--hc------CCCcEEEECCCCCHHHHHHHHhhcCCCEEE
Confidence 4689999999999999999999999999999997643221 11 1268899999999999999998 899999
Q ss_pred EecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCc
Q 023515 87 HTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL 165 (281)
Q Consensus 87 h~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 165 (281)
|+|+..... ..+.++..+++|+.++.+++++|++. ++++|||+||.+++. . ....+++|+++..| .+
T Consensus 73 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~v~~Ss~~~~~-~----~~~~~~~E~~~~~~------~~ 140 (330)
T 2c20_A 73 HFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEF-KVDKFIFSSTAATYG-E----VDVDLITEETMTNP------TN 140 (330)
T ss_dssp ECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEECCGGGGC-S----CSSSSBCTTSCCCC------SS
T ss_pred ECCcccCccccccCHHHHHHHHhHHHHHHHHHHHHc-CCCEEEEeCCceeeC-C----CCCCCCCcCCCCCC------CC
Confidence 999864321 12234578899999999999999997 888999999987764 2 12456788877654 36
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCC-------CCccHHHHHHHHhCC-C---C--------CCCC
Q 023515 166 WYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPT-------LNTSAAAVLSLIKGA-Q---T--------YPNV 226 (281)
Q Consensus 166 ~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~-------~~~~~~~~~~~~~~~-~---~--------~~~~ 226 (281)
.|+.+|.++|.+++.+++++|++++++||+++|||..... .......+.+...+. + . .+++
T Consensus 141 ~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~ 220 (330)
T 2c20_A 141 TYGETKLAIEKMLHWYSQASNLRYKIFRYFNVAGATPNGIIGEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTC 220 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCEEEEEECSEEECCCTTCSSCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCCSSSSSSC
T ss_pred hHHHHHHHHHHHHHHHHHHhCCcEEEEecCcccCCCCcCccccccccccchHHHHHHHHhhcCCCeEEeCCccccCCCce
Confidence 7999999999999999888899999999999999963211 112223333333322 1 1 2467
Q ss_pred CccceeHHHHHHHHHHhhcCCC---CCccEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 227 TFGWVNVKDVANAHIQAFEVPS---ANGRYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~---~~g~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
.++|+|++|+|++++.+++++. .+++||++ ++.+|+.|+++.+.+.+|.
T Consensus 221 ~~~~v~v~Dva~a~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~ 273 (330)
T 2c20_A 221 IRDYIHVEDLVAAHFLGLKDLQNGGESDFYNLGNGNGFSVKEIVDAVREVTNH 273 (330)
T ss_dssp EECEEEHHHHHHHHHHHHHHHHTTCCCEEEECCCTTCBCHHHHHHHHHHHTTS
T ss_pred eEeeEeHHHHHHHHHHHHhccccCCCCCeEEeCCCCCccHHHHHHHHHHHhCC
Confidence 7899999999999999997643 24689987 5789999999999999874
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-38 Score=269.84 Aligned_cols=254 Identities=15% Similarity=0.183 Sum_probs=197.7
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHC--CCEEEEEEcCCCC--cchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSR--GYTVKASVRDPND--PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~ 84 (281)
||+|||||||||||++++++|+++ |++|++++|.... ...+..+ . ..+++++.+|++|++++.++++++|+
T Consensus 4 m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~---~--~~~~~~~~~Dl~d~~~~~~~~~~~d~ 78 (348)
T 1oc2_A 4 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAI---L--GDRVELVVGDIADAELVDKLAAKADA 78 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGG---C--SSSEEEEECCTTCHHHHHHHHTTCSE
T ss_pred CcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHhhh---c--cCCeEEEECCCCCHHHHHHHhhcCCE
Confidence 578999999999999999999998 8999999997532 2222111 1 24789999999999999999999999
Q ss_pred eEEecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCC-------CCCCCeeeecCCCCC
Q 023515 85 VCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGK-------PRTPDVVVDETWFSD 156 (281)
Q Consensus 85 Vih~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~-------~~~~~~~~~e~~~~~ 156 (281)
|||+||..... ....++..+++|+.++.+++++|.+. +. +|||+||.++|+.... ......+++|+++..
T Consensus 79 vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~-~~-~~v~~SS~~vyg~~~~~~~~~~~~~~~~~~~~E~~~~~ 156 (348)
T 1oc2_A 79 IVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKY-DI-RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYN 156 (348)
T ss_dssp EEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHH-TC-EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCCC
T ss_pred EEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHh-CC-eEEEecccceeCCCcccccccccccccCCCcCCCCCCC
Confidence 99999974321 11234588999999999999999997 66 9999999877642210 001124567776654
Q ss_pred hhhhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCC----CCCCCcccee
Q 023515 157 PEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT----YPNVTFGWVN 232 (281)
Q Consensus 157 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~ 232 (281)
| .+.|+.+|.++|.+++.++.++|++++++||+.+|||...+. ......+.....+.+. .+.+.++|+|
T Consensus 157 ~------~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 229 (348)
T 1oc2_A 157 P------SSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIE-KFIPRQITNILAGIKPKLYGEGKNVRDWIH 229 (348)
T ss_dssp C------CSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCTT-SHHHHHHHHHHHTCCCEEETTSCCEEECEE
T ss_pred C------CCccHHHHHHHHHHHHHHHHHhCCCEEEEeeceeeCCCCCcc-chHHHHHHHHHcCCCceEecCCCceEeeEE
Confidence 3 357999999999999999888899999999999999986432 2234455556666532 2467789999
Q ss_pred HHHHHHHHHHhhcCCCCCccEEEec-CCCCHHHHHHHHHHhCCCC
Q 023515 233 VKDVANAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAF 276 (281)
Q Consensus 233 ~~D~a~~i~~~~~~~~~~g~~~~~~-~~~t~~e~~~~i~~~~~~~ 276 (281)
++|+|++++.+++++..+++||+++ ..+++.|+++.+.+.+|..
T Consensus 230 v~Dva~~~~~~~~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~ 274 (348)
T 1oc2_A 230 TNDHSTGVWAILTKGRMGETYLIGADGEKNNKEVLELILEKMGQP 274 (348)
T ss_dssp HHHHHHHHHHHHHHCCTTCEEEECCSCEEEHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhhCCCCCCeEEeCCCCCCCHHHHHHHHHHHhCCC
Confidence 9999999999998665555899875 6899999999999998753
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-38 Score=268.01 Aligned_cols=249 Identities=19% Similarity=0.198 Sum_probs=196.4
Q ss_pred CeEEEeCCchHHHHHHHHHHHHC---C---CEEEEEEcCCCC--cchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcC
Q 023515 10 KVVCVTGASGYIASWLVKLLLSR---G---YTVKASVRDPND--PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG 81 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~---g---~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 81 (281)
|+|||||||||||++++++|+++ | ++|++++|.... ...+..+. ...+++++++|++|++++.+++++
T Consensus 1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~Dl~d~~~~~~~~~~ 76 (337)
T 1r6d_A 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVD----ADPRLRFVHGDIRDAGLLARELRG 76 (337)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGT----TCTTEEEEECCTTCHHHHHHHTTT
T ss_pred CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhhhhcc----cCCCeEEEEcCCCCHHHHHHHhcC
Confidence 47999999999999999999997 8 999999997532 22222211 124789999999999999999999
Q ss_pred CcEeEEecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhh
Q 023515 82 CDGVCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVC 160 (281)
Q Consensus 82 ~d~Vih~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 160 (281)
+|+|||+|+..... ....++.++++|+.++.+++++|.+. ++++|||+||.++|... ...+++|+++..|
T Consensus 77 ~d~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~-~~~~~v~~SS~~vyg~~-----~~~~~~E~~~~~~--- 147 (337)
T 1r6d_A 77 VDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDA-GVGRVVHVSTNQVYGSI-----DSGSWTESSPLEP--- 147 (337)
T ss_dssp CCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHT-TCCEEEEEEEGGGGCCC-----SSSCBCTTSCCCC---
T ss_pred CCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEecchHHhCCC-----CCCCCCCCCCCCC---
Confidence 99999999864321 11234588999999999999999998 78899999998776421 1345677766543
Q ss_pred ccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCC--C--CCCCCccceeHHHH
Q 023515 161 KQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--T--YPNVTFGWVNVKDV 236 (281)
Q Consensus 161 ~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~i~~~D~ 236 (281)
.+.|+.+|.++|.+++.+++++|++++++||+.+|||...+. ......+.....+.+ . .+++.++|+|++|+
T Consensus 148 ---~~~Y~~sK~~~e~~~~~~~~~~g~~~~ilrp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dv 223 (337)
T 1r6d_A 148 ---NSPYAASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPE-KLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDH 223 (337)
T ss_dssp ---CSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTT-SHHHHHHHHHHTTCCEEEETTSCCEEEEEEHHHH
T ss_pred ---CCchHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeECCCCCCC-ChHHHHHHHHhcCCCcEEeCCCCeeEeeEeHHHH
Confidence 367999999999999999888899999999999999986432 223345555556552 2 24677899999999
Q ss_pred HHHHHHhhcCCCCCccEEEec-CCCCHHHHHHHHHHhCCC
Q 023515 237 ANAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 237 a~~i~~~~~~~~~~g~~~~~~-~~~t~~e~~~~i~~~~~~ 275 (281)
|++++.+++++..+++||+++ ..+|+.|+++.+.+.+|.
T Consensus 224 a~a~~~~~~~~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~ 263 (337)
T 1r6d_A 224 CRGIALVLAGGRAGEIYHIGGGLELTNRELTGILLDSLGA 263 (337)
T ss_dssp HHHHHHHHHHCCTTCEEEECCCCEEEHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCCCCCEEEeCCCCCccHHHHHHHHHHHhCC
Confidence 999999998765556999875 679999999999998875
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-38 Score=263.14 Aligned_cols=225 Identities=13% Similarity=0.045 Sum_probs=182.3
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcC-CcEeE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG-CDGVC 86 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~-~d~Vi 86 (281)
+||+||||| +||||++|+++|+++|++|++++|+.++. ..+++++++|++|++.+.+++++ +|+||
T Consensus 2 ~~~~ilVtG-aG~iG~~l~~~L~~~g~~V~~~~r~~~~~------------~~~~~~~~~Dl~d~~~~~~~~~~~~d~vi 68 (286)
T 3gpi_A 2 SLSKILIAG-CGDLGLELARRLTAQGHEVTGLRRSAQPM------------PAGVQTLIADVTRPDTLASIVHLRPEILV 68 (286)
T ss_dssp CCCCEEEEC-CSHHHHHHHHHHHHTTCCEEEEECTTSCC------------CTTCCEEECCTTCGGGCTTGGGGCCSEEE
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCcccc------------ccCCceEEccCCChHHHHHhhcCCCCEEE
Confidence 367899999 59999999999999999999999987642 13688999999999999999987 99999
Q ss_pred EecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCch
Q 023515 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (281)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 166 (281)
|+|+.... .++..+++|+.++.+++++|++. ++++|||+||.++|.. ....+++|+++..|. +.
T Consensus 69 h~a~~~~~----~~~~~~~~n~~~~~~ll~a~~~~-~~~~~v~~SS~~vyg~-----~~~~~~~E~~~~~p~------~~ 132 (286)
T 3gpi_A 69 YCVAASEY----SDEHYRLSYVEGLRNTLSALEGA-PLQHVFFVSSTGVYGQ-----EVEEWLDEDTPPIAK------DF 132 (286)
T ss_dssp ECHHHHHH----C-----CCSHHHHHHHHHHTTTS-CCCEEEEEEEGGGCCC-----CCSSEECTTSCCCCC------SH
T ss_pred EeCCCCCC----CHHHHHHHHHHHHHHHHHHHhhC-CCCEEEEEcccEEEcC-----CCCCCCCCCCCCCCC------Ch
Confidence 99986432 23477899999999999999987 8899999999877642 244577888877653 67
Q ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC--CCCCCCCccceeHHHHHHHHHHhh
Q 023515 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA--QTYPNVTFGWVNVKDVANAHIQAF 244 (281)
Q Consensus 167 Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~D~a~~i~~~~ 244 (281)
|+.+|.++|.+ +.+ ++++++||+.+|||... .++..+.. . ...+++.++|+|++|+|++++.++
T Consensus 133 Y~~sK~~~E~~-~~~-----~~~~ilR~~~v~G~~~~-------~~~~~~~~-~~~~~~~~~~~~~i~v~Dva~~~~~~~ 198 (286)
T 3gpi_A 133 SGKRMLEAEAL-LAA-----YSSTILRFSGIYGPGRL-------RMIRQAQT-PEQWPARNAWTNRIHRDDGAAFIAYLI 198 (286)
T ss_dssp HHHHHHHHHHH-GGG-----SSEEEEEECEEEBTTBC-------HHHHHTTC-GGGSCSSBCEECEEEHHHHHHHHHHHH
T ss_pred hhHHHHHHHHH-Hhc-----CCeEEEecccccCCCch-------hHHHHHHh-cccCCCcCceeEEEEHHHHHHHHHHHH
Confidence 99999999998 543 99999999999998743 23333333 2 233578889999999999999999
Q ss_pred cC---CCCCccEEEec-CCCCHHHHHHHHHHhCCC
Q 023515 245 EV---PSANGRYCLVE-RVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 245 ~~---~~~~g~~~~~~-~~~t~~e~~~~i~~~~~~ 275 (281)
++ ...+++||+++ +.+|+.|+++.+.+.+|.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~ 233 (286)
T 3gpi_A 199 QQRSHAVPERLYIVTDNQPLPVHDLLRWLADRQGI 233 (286)
T ss_dssp HHHTTSCCCSEEEECCSCCEEHHHHHHHHHHHTTC
T ss_pred hhhccCCCCceEEEeCCCCCCHHHHHHHHHHHcCC
Confidence 98 34567999984 789999999999999985
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-38 Score=265.72 Aligned_cols=246 Identities=22% Similarity=0.303 Sum_probs=190.9
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--CCcEeEE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVCH 87 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~Vih 87 (281)
|+|||||||||||++++++|+++|++|++++|....... .+ ..++.++++|++|++++.++++ ++|+|||
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~--~~------~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~ 72 (311)
T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRE--NV------PKGVPFFRVDLRDKEGVERAFREFRPTHVSH 72 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEECCCSSCCGG--GS------CTTCCEECCCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCCcCchh--hc------ccCeEEEECCCCCHHHHHHHHHhcCCCEEEE
Confidence 479999999999999999999999999999985432211 11 1357789999999999999888 8999999
Q ss_pred ecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCch
Q 023515 88 TASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (281)
Q Consensus 88 ~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 166 (281)
+|+..... ....+...+++|+.++.+++++|++. ++++|||+||.+..++.. ....+++|+++..| .+.
T Consensus 73 ~a~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~-~~~~iv~~SS~~~~~g~~---~~~~~~~E~~~~~~------~~~ 142 (311)
T 2p5y_A 73 QAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQY-GVEKLVFASTGGAIYGEV---PEGERAEETWPPRP------KSP 142 (311)
T ss_dssp CCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-TCSEEEEEEEHHHHHCCC---CTTCCBCTTSCCCC------CSH
T ss_pred CccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCEEEEeCCChhhcCCC---CCCCCcCCCCCCCC------CCh
Confidence 99864321 11234578999999999999999997 788999999983334321 12335677766543 356
Q ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCC--ccHHHHHHHHhCCC---------CCCCCCccceeHHH
Q 023515 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLN--TSAAAVLSLIKGAQ---------TYPNVTFGWVNVKD 235 (281)
Q Consensus 167 Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~--~~~~~~~~~~~~~~---------~~~~~~~~~i~~~D 235 (281)
|+.+|.++|.+++.+++++|++++++||+++|||....... .....+..+..+.+ ..+.+.++|+|++|
T Consensus 143 Y~~sK~~~e~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D 222 (311)
T 2p5y_A 143 YAASKAAFEHYLSVYGQSYGLKWVSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGD 222 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCSSSTTHHHHHHHHHHHHTCCEEEECSSSTTSCCCEECEEEHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEeeccccCcCCCCCCcCcHHHHHHHHHHcCCCcEEEecccCCCCCeEEeeEEHHH
Confidence 99999999999999988889999999999999998654321 22334455555553 22457789999999
Q ss_pred HHHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 236 VANAHIQAFEVPSANGRYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 236 ~a~~i~~~~~~~~~~g~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
+|++++.+++++ ++.||++ +..+|+.|+++.+.+.+|.
T Consensus 223 va~a~~~~~~~~--~~~~~i~~~~~~s~~e~~~~i~~~~g~ 261 (311)
T 2p5y_A 223 VAEAHALALFSL--EGIYNVGTGEGHTTREVLMAVAEAAGK 261 (311)
T ss_dssp HHHHHHHHHHHC--CEEEEESCSCCEEHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCC--CCEEEeCCCCCccHHHHHHHHHHHhCC
Confidence 999999999864 5689987 5789999999999998874
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-37 Score=272.36 Aligned_cols=256 Identities=19% Similarity=0.197 Sum_probs=188.6
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcc-----------------hhhhhhhccCCCCcEEEEEcCCC
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPK-----------------KTRHLLALDGASERLQLFKANLL 70 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~D~~ 70 (281)
.|++|||||||||||++++++|+++|++|++++|...... .+..+.... ..+++++.+|++
T Consensus 10 ~~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~v~~~~~Dl~ 87 (404)
T 1i24_A 10 HGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT--GKSIELYVGDIC 87 (404)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHH--CCCCEEEESCTT
T ss_pred CCCeEEEeCCCcHHHHHHHHHHHhCCCeEEEEEecCccccccccccccccccchhhhhhhhHhhcc--CCceEEEECCCC
Confidence 4789999999999999999999999999999988532110 111111011 146889999999
Q ss_pred CcCcHHHHhcC--CcEeEEecccCCCC--CCCc--cchhhhhHHHHHHHHHHHhhhCCCc-cEEEEeccceeeecCCCCC
Q 023515 71 EEGSFDSIVDG--CDGVCHTASPFYHD--AKDP--QVELLDPAVKGTLNVLNSCAKFPSI-KRVVLTSSMAAVLNTGKPR 143 (281)
Q Consensus 71 ~~~~~~~~~~~--~d~Vih~a~~~~~~--~~~~--~~~~~~~n~~~~~~l~~~~~~~~~~-~~~v~~SS~~~~~~~~~~~ 143 (281)
|++++.+++++ +|+|||+||..... ..++ +...+++|+.|+.+++++|++. +. ++|||+||.++|....
T Consensus 88 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~-~~~~~~V~~SS~~vyg~~~--- 163 (404)
T 1i24_A 88 DFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEF-GEECHLVKLGTMGEYGTPN--- 163 (404)
T ss_dssp SHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEEECCGGGGCCCS---
T ss_pred CHHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHh-CCCcEEEEeCcHHHhCCCC---
Confidence 99999999987 99999999964321 1111 2247899999999999999987 65 5999999987654211
Q ss_pred CCCeeeecCCCCChh--------hhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCC----------
Q 023515 144 TPDVVVDETWFSDPE--------VCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPT---------- 205 (281)
Q Consensus 144 ~~~~~~~e~~~~~~~--------~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~---------- 205 (281)
.+++|+.+.... .+..+.+.|+.+|.++|.+++.+++++|++++++||+.||||...+.
T Consensus 164 ---~~~~E~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ivrp~~v~Gp~~~~~~~~~~~~~~~ 240 (404)
T 1i24_A 164 ---IDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRL 240 (404)
T ss_dssp ---SCBCSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCC
T ss_pred ---CCCCccccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHhcCCeEEEEecceeeCCCCCcccccccccccc
Confidence 233443110000 01123467999999999999999888899999999999999975421
Q ss_pred ------CCccHHHHHHHHhCCC--CC--CCCCccceeHHHHHHHHHHhhcCCCCCc---cEEEecCCCCHHHHHHHHHHh
Q 023515 206 ------LNTSAAAVLSLIKGAQ--TY--PNVTFGWVNVKDVANAHIQAFEVPSANG---RYCLVERVSHYSEIVNIIREL 272 (281)
Q Consensus 206 ------~~~~~~~~~~~~~~~~--~~--~~~~~~~i~~~D~a~~i~~~~~~~~~~g---~~~~~~~~~t~~e~~~~i~~~ 272 (281)
......++..+..+.+ .+ +.+.++|+|++|+|++++.+++++...| +||++++.+|+.|+++.+.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~~l~~~~~~g~~~~yni~~~~~s~~e~~~~i~~~ 320 (404)
T 1i24_A 241 DYDAVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSVNELASLVTKA 320 (404)
T ss_dssp CCSTTTCCHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHSCCCTTCEEEEEECSEEEEHHHHHHHHHHH
T ss_pred ccccchhhHHHHHHHHHHcCCeeEEeCCCCceECcEEHHHHHHHHHHHHhCcccCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 1224455666666663 22 4678999999999999999998765433 899987889999999999997
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-37 Score=266.27 Aligned_cols=252 Identities=15% Similarity=0.233 Sum_probs=192.2
Q ss_pred CeEEEeCCchHHHHHHHHHHHHC-CCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCc-CcHHHHhcCCcEeEE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSR-GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEE-GSFDSIVDGCDGVCH 87 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~d~Vih 87 (281)
|+|||||||||||++++++|+++ |++|++++|+..+...+.. ..+++++++|++|. +.+.++++++|+|||
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~~d~vih 73 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLN-------HPHFHFVEGDISIHSEWIEYHVKKCDVVLP 73 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTT-------CTTEEEEECCTTTCSHHHHHHHHHCSEEEE
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhc-------CCCeEEEeccccCcHHHHHhhccCCCEEEE
Confidence 47999999999999999999998 8999999998654322111 24689999999985 458888889999999
Q ss_pred ecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhh-ccCCc
Q 023515 88 TASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVC-KQSEL 165 (281)
Q Consensus 88 ~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~-~~~~~ 165 (281)
+||..... ....++..+++|+.++.+++++|++. + ++|||+||.+++... ...+++|+++..+..+ ..+.+
T Consensus 74 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~-~~~v~~SS~~v~g~~-----~~~~~~e~~~~~~~~~~~~~~~ 146 (345)
T 2bll_A 74 LVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKY-R-KRIIFPSTSEVYGMC-----SDKYFDEDHSNLIVGPVNKPRW 146 (345)
T ss_dssp CBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHT-T-CEEEEECCGGGGBTC-----CCSSBCTTTCCCBCCCTTCGGG
T ss_pred cccccCccchhcCHHHHHHHHHHHHHHHHHHHHHh-C-CeEEEEecHHHcCCC-----CCCCcCCcccccccCcccCccc
Confidence 99864321 11234578899999999999999997 6 899999998776421 2334667665321111 01234
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCC-------CccHHHHHHHHhCCC--CC--CCCCccceeHH
Q 023515 166 WYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL-------NTSAAAVLSLIKGAQ--TY--PNVTFGWVNVK 234 (281)
Q Consensus 166 ~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~-------~~~~~~~~~~~~~~~--~~--~~~~~~~i~~~ 234 (281)
.|+.+|.++|.+++.+++++|++++++||+.+|||...... .....++.....+.+ .+ +++.++|+|++
T Consensus 147 ~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~ 226 (345)
T 2bll_A 147 IYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIR 226 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEGGGSCCEEECEEHH
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccCCCcccccccccccccHHHHHHHHHHcCCCcEEECCCCEEEEEEEHH
Confidence 69999999999999998888999999999999999864311 123345555666653 22 46788999999
Q ss_pred HHHHHHHHhhcCCC---CCccEEEec-C-CCCHHHHHHHHHHhCCC
Q 023515 235 DVANAHIQAFEVPS---ANGRYCLVE-R-VSHYSEIVNIIRELYPA 275 (281)
Q Consensus 235 D~a~~i~~~~~~~~---~~g~~~~~~-~-~~t~~e~~~~i~~~~~~ 275 (281)
|+|++++.+++++. .+++||+++ + .+|+.|+++.+.+.+|.
T Consensus 227 Dva~a~~~~~~~~~~~~~g~~~~i~~~~~~~s~~e~~~~i~~~~g~ 272 (345)
T 2bll_A 227 DGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEK 272 (345)
T ss_dssp HHHHHHHHHHHCGGGTTTTEEEEECCTTSEEEHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhccccCCCceEEeCCCCCCCCHHHHHHHHHHHhCC
Confidence 99999999998764 344899986 3 79999999999998764
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=264.49 Aligned_cols=239 Identities=18% Similarity=0.184 Sum_probs=184.2
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC----cchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCC
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND----PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGC 82 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 82 (281)
+++|+|||||||||||++|+++|+++|++|++++|+... ...+..+. ...+++++.+|++ ++
T Consensus 5 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~----------~~ 70 (321)
T 3vps_A 5 TLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFL----EKPVLELEERDLS----------DV 70 (321)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSSCCSSCCTTSSEEE----CSCGGGCCHHHHT----------TE
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcccccchhhhhhhc----cCCCeeEEeCccc----------cC
Confidence 457899999999999999999999999999999998752 21211110 1124555556654 79
Q ss_pred cEeEEecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhc
Q 023515 83 DGVCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCK 161 (281)
Q Consensus 83 d~Vih~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 161 (281)
|+|||+|+..... ........++ |+.++.+++++|++. ++++|||+||.++|.. ....+++|+++..|.
T Consensus 71 d~vi~~a~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~-~v~~~v~~SS~~v~~~-----~~~~~~~E~~~~~p~--- 140 (321)
T 3vps_A 71 RLVYHLASHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSV-GVPKVVVGSTCEVYGQ-----ADTLPTPEDSPLSPR--- 140 (321)
T ss_dssp EEEEECCCCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHH-TCCEEEEEEEGGGGCS-----CSSSSBCTTSCCCCC---
T ss_pred CEEEECCccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHc-CCCeEEEecCHHHhCC-----CCCCCCCCCCCCCCC---
Confidence 9999999864321 1122235667 999999999999998 7899999999877642 234567888776643
Q ss_pred cCCchhhhhHHHHHHHHHHHHHhcCC-cEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCC----CCCCCCccceeHHHH
Q 023515 162 QSELWYPLSKTLAEDAAWKFAKEKSI-DLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ----TYPNVTFGWVNVKDV 236 (281)
Q Consensus 162 ~~~~~Y~~sK~~~e~~~~~~~~~~g~-~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~D~ 236 (281)
+.|+.+|.++|.+++.+++++++ +++++||+.+|||..... .....++.....+.+ ..+++.++|+|++|+
T Consensus 141 ---~~Y~~sK~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dv 216 (321)
T 3vps_A 141 ---SPYAASKVGLEMVAGAHQRASVAPEVGIVRFFNVYGPGERPD-ALVPRLCANLLTRNELPVEGDGEQRRDFTYITDV 216 (321)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHSSSSCEEEEEEECEEECTTCCTT-SHHHHHHHHHHHHSEEEEETTSCCEECEEEHHHH
T ss_pred ---ChhHHHHHHHHHHHHHHHHHcCCCceEEEEeccccCcCCCCC-ChHHHHHHHHHcCCCeEEeCCCCceEceEEHHHH
Confidence 67999999999999999998999 999999999999986542 234455555666652 225688999999999
Q ss_pred HHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 237 ANAHIQAFEVPSANGRYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 237 a~~i~~~~~~~~~~g~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
|++++.+++++.. |+||++ ++.+|+.|+++.+. .+|.
T Consensus 217 a~~~~~~~~~~~~-g~~~i~~~~~~s~~e~~~~i~-~~g~ 254 (321)
T 3vps_A 217 VDKLVALANRPLP-SVVNFGSGQSLSVNDVIRILQ-ATSP 254 (321)
T ss_dssp HHHHHHGGGSCCC-SEEEESCSCCEEHHHHHHHHH-TTCT
T ss_pred HHHHHHHHhcCCC-CeEEecCCCcccHHHHHHHHH-HhCC
Confidence 9999999998876 499997 57899999999999 8874
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-37 Score=248.32 Aligned_cols=220 Identities=25% Similarity=0.302 Sum_probs=172.3
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEe
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~ 88 (281)
||+|||||||||||++++++|+++|++|++++|++.+...+ ..+++++++|++|++++.++++++|+|||+
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~---------~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ 74 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIE---------NEHLKVKKADVSSLDEVCEVCKGADAVISA 74 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCC---------CTTEEEECCCTTCHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhc---------cCceEEEEecCCCHHHHHHHhcCCCEEEEe
Confidence 57999999999999999999999999999999987544321 147899999999999999999999999999
Q ss_pred cccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchhh
Q 023515 89 ASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYP 168 (281)
Q Consensus 89 a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~ 168 (281)
|+.... . ...+++|+.++.+++++|++. ++++|||+||.+++++.+ ....|+.+..| .++|+
T Consensus 75 a~~~~~---~--~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~Ss~~~~~~~~------~~~~~~~~~~p------~~~Y~ 136 (227)
T 3dhn_A 75 FNPGWN---N--PDIYDETIKVYLTIIDGVKKA-GVNRFLMVGGAGSLFIAP------GLRLMDSGEVP------ENILP 136 (227)
T ss_dssp CCC-----------CCSHHHHHHHHHHHHHHHT-TCSEEEEECCSTTSEEET------TEEGGGTTCSC------GGGHH
T ss_pred CcCCCC---C--hhHHHHHHHHHHHHHHHHHHh-CCCEEEEeCChhhccCCC------CCccccCCcch------HHHHH
Confidence 986422 1 147899999999999999998 888999999988776432 12234444433 35699
Q ss_pred hhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC-CCCCCCCccceeHHHHHHHHHHhhcCC
Q 023515 169 LSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA-QTYPNVTFGWVNVKDVANAHIQAFEVP 247 (281)
Q Consensus 169 ~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~D~a~~i~~~~~~~ 247 (281)
.+|.++|.+++.++++.+++++++||+.+|||........ .... +......++|+|++|+|++++.+++++
T Consensus 137 ~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~~~~~--------~~~~~~~~~~~~~~~i~~~Dva~ai~~~l~~~ 208 (227)
T 3dhn_A 137 GVKALGEFYLNFLMKEKEIDWVFFSPAADMRPGVRTGRYR--------LGKDDMIVDIVGNSHISVEDYAAAMIDELEHP 208 (227)
T ss_dssp HHHHHHHHHHHTGGGCCSSEEEEEECCSEEESCCCCCCCE--------EESSBCCCCTTSCCEEEHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhhccCccEEEEeCCcccCCCcccccee--------ecCCCcccCCCCCcEEeHHHHHHHHHHHHhCc
Confidence 9999999999999878899999999999999975432211 0111 222333489999999999999999998
Q ss_pred CCCc-cEEEec-CCCCHH
Q 023515 248 SANG-RYCLVE-RVSHYS 263 (281)
Q Consensus 248 ~~~g-~~~~~~-~~~t~~ 263 (281)
...| +|++++ ++.+|.
T Consensus 209 ~~~g~~~~~~~~~~~~~~ 226 (227)
T 3dhn_A 209 KHHQERFTIGYLEHHHHH 226 (227)
T ss_dssp CCCSEEEEEECCSCCC--
T ss_pred cccCcEEEEEeehhcccC
Confidence 8666 888875 677764
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-37 Score=264.50 Aligned_cols=254 Identities=20% Similarity=0.215 Sum_probs=191.5
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC-------cchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-------PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD- 80 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-------~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~- 80 (281)
+|+|||||||||||++++++|+++|++|++++|.... ...+..+.... ..+++++.+|++|.+++.++++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~D~~~~~~~~~~~~~ 79 (348)
T 1ek6_A 2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELT--GRSVEFEEMDILDQGALQRLFKK 79 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHH--TCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhcc--CCceEEEECCCCCHHHHHHHHHh
Confidence 5789999999999999999999999999999986543 11222211111 1368899999999999999998
Q ss_pred -CCcEeEEecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChh
Q 023515 81 -GCDGVCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPE 158 (281)
Q Consensus 81 -~~d~Vih~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~ 158 (281)
++|+|||+|+..... ....++..+++|+.++.+++++|++. ++++|||+||.+++. . ....+++|+++..|
T Consensus 80 ~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv~~SS~~~~g-~----~~~~~~~E~~~~~p- 152 (348)
T 1ek6_A 80 YSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH-GVKNLVFSSSATVYG-N----PQYLPLDEAHPTGG- 152 (348)
T ss_dssp CCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEEEEGGGGC-S----CSSSSBCTTSCCCC-
T ss_pred cCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHh-CCCEEEEECcHHHhC-C----CCCCCcCCCCCCCC-
Confidence 899999999864321 12234578999999999999999997 788999999987664 2 12456788876554
Q ss_pred hhccCCchhhhhHHHHHHHHHHHHHh-cCCcEEEEcCCcccCCCCC------CC--CCccHHHHHHHHh--CCC--C---
Q 023515 159 VCKQSELWYPLSKTLAEDAAWKFAKE-KSIDLVTINPAMVIGPLLQ------PT--LNTSAAAVLSLIK--GAQ--T--- 222 (281)
Q Consensus 159 ~~~~~~~~Y~~sK~~~e~~~~~~~~~-~g~~~~~irp~~v~g~~~~------~~--~~~~~~~~~~~~~--~~~--~--- 222 (281)
..+.|+.+|.++|.+++.++++ .+++++++||+++|||... +. .......+.+... +.+ .
T Consensus 153 ----~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 228 (348)
T 1ek6_A 153 ----CTNPYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGN 228 (348)
T ss_dssp ----CSSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECS
T ss_pred ----CCCchHHHHHHHHHHHHHHHhcCCCcceEEEeeccccCCCcccccCcCcccchhhHHHHHHHHHHhcCCCeEEeCC
Confidence 1356999999999999999877 2399999999999998531 11 1122233333333 221 1
Q ss_pred -----CCCCCccceeHHHHHHHHHHhhcCC--CCC-ccEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 223 -----YPNVTFGWVNVKDVANAHIQAFEVP--SAN-GRYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 223 -----~~~~~~~~i~~~D~a~~i~~~~~~~--~~~-g~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
.+++.++|+|++|+|++++.+++++ ..+ ++||++ ++.+|+.|+++.+.+.+|.
T Consensus 229 ~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~g~~~~ni~~~~~~s~~e~~~~i~~~~g~ 290 (348)
T 1ek6_A 229 DYDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGK 290 (348)
T ss_dssp CSSSSSSSCEECEEEHHHHHHHHHHHHHHHTTTCCEEEEEECCSCCEEHHHHHHHHHHHHCS
T ss_pred cccCCCCceEEeeEEHHHHHHHHHHHHhcccccCCceEEEeCCCCCccHHHHHHHHHHHhCC
Confidence 2467789999999999999999764 233 589987 5789999999999999874
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-37 Score=263.33 Aligned_cols=243 Identities=20% Similarity=0.278 Sum_probs=191.3
Q ss_pred eEEEeCCchHHHHHHHHHHHHC--CCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--CCcEeE
Q 023515 11 VVCVTGASGYIASWLVKLLLSR--GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVC 86 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~Vi 86 (281)
+|||||||||||++++++|+++ |++|++++|+..... ++.++.+|++|++++.++++ ++|+||
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~-------------~~~~~~~D~~d~~~~~~~~~~~~~d~vi 67 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTG-------------GIKFITLDVSNRDEIDRAVEKYSIDAIF 67 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCCT-------------TCCEEECCTTCHHHHHHHHHHTTCCEEE
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCcccc-------------CceEEEecCCCHHHHHHHHhhcCCcEEE
Confidence 4899999999999999999998 799999998764321 35688999999999999998 899999
Q ss_pred EecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCch
Q 023515 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (281)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 166 (281)
|+|+.........++..+++|+.++.+++++|++. ++++|||+||..++... .+..+.+|+.+..| .+.
T Consensus 68 h~a~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~v~~SS~~~~~~~----~~~~~~~e~~~~~p------~~~ 136 (317)
T 3ajr_A 68 HLAGILSAKGEKDPALAYKVNMNGTYNILEAAKQH-RVEKVVIPSTIGVFGPE----TPKNKVPSITITRP------RTM 136 (317)
T ss_dssp ECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEEEEGGGCCTT----SCSSSBCSSSCCCC------CSH
T ss_pred ECCcccCCccccChHHHhhhhhHHHHHHHHHHHHc-CCCEEEEecCHHHhCCC----CCCCCccccccCCC------Cch
Confidence 99987432222344588999999999999999997 88999999998776521 12234566665543 367
Q ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCC---CccHHHHHHHHhCCC----CCCCCCccceeHHHHHHH
Q 023515 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL---NTSAAAVLSLIKGAQ----TYPNVTFGWVNVKDVANA 239 (281)
Q Consensus 167 Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~i~~~D~a~~ 239 (281)
|+.+|.++|.+++.+++++|++++++||+.+||+...+.. ......+.+...+.+ ..+++.++|+|++|+|++
T Consensus 137 Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a 216 (317)
T 3ajr_A 137 FGVTKIAAELLGQYYYEKFGLDVRSLRYPGIISYKAEPTAGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYMPDALKA 216 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSSSCCCSCSSTHHHHHHHHHHTTCCEEECSCTTCCEEEEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEecCcEeccCCCCCCcchhHHHHHHHHHHhCCCceeecCccceeeeeEHHHHHHH
Confidence 9999999999999998888999999999999998654322 112233344443331 225778999999999999
Q ss_pred HHHhhcCCCC----CccEEEecCCCCHHHHHHHHHHhCCCCC
Q 023515 240 HIQAFEVPSA----NGRYCLVERVSHYSEIVNIIRELYPAFQ 277 (281)
Q Consensus 240 i~~~~~~~~~----~g~~~~~~~~~t~~e~~~~i~~~~~~~~ 277 (281)
++.+++++.. +++||++++.+|+.|+++.+.+.+|..+
T Consensus 217 ~~~~l~~~~~~~~~g~~~~i~~~~~s~~e~~~~i~~~~~~~~ 258 (317)
T 3ajr_A 217 LVDLYEADRDKLVLRNGYNVTAYTFTPSELYSKIKERIPEFE 258 (317)
T ss_dssp HHHHHHCCGGGCSSCSCEECCSEEECHHHHHHHHHTTCCSCC
T ss_pred HHHHHhCCccccccCceEecCCccccHHHHHHHHHHHCCccc
Confidence 9999987643 3589998878999999999999988543
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=262.01 Aligned_cols=253 Identities=17% Similarity=0.182 Sum_probs=194.9
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcC--CcEe
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG--CDGV 85 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~d~V 85 (281)
++|+|||||||||||++++++|+++|++|++++|+..+... ..+... ....+++++++|++|++++.+++++ +|+|
T Consensus 2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~-~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 79 (345)
T 2z1m_A 2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFAS-WRLKEL-GIENDVKIIHMDLLEFSNIIRTIEKVQPDEV 79 (345)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTT-HHHHHT-TCTTTEEECCCCTTCHHHHHHHHHHHCCSEE
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCccccc-ccHhhc-cccCceeEEECCCCCHHHHHHHHHhcCCCEE
Confidence 47899999999999999999999999999999998764321 111111 1124689999999999999998885 6999
Q ss_pred EEecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCc-cEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccC
Q 023515 86 CHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSI-KRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQS 163 (281)
Q Consensus 86 ih~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 163 (281)
||+||..... ..+.++..+++|+.++.+++++|.+. ++ ++|||+||.++|+. . ...+++|+++..|
T Consensus 80 ih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~-~~~~~iv~~SS~~vyg~-~----~~~~~~e~~~~~~------ 147 (345)
T 2z1m_A 80 YNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTV-KPDTKFYQASTSEMFGK-V----QEIPQTEKTPFYP------ 147 (345)
T ss_dssp EECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHH-CTTCEEEEEEEGGGGCS-C----SSSSBCTTSCCCC------
T ss_pred EECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEEechhhcCC-C----CCCCCCccCCCCC------
Confidence 9999974321 13456688999999999999999986 65 89999999877642 1 2335677766543
Q ss_pred CchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCC--ccHHHHHHHHhCCC-C--C--CCCCccceeHHHH
Q 023515 164 ELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLN--TSAAAVLSLIKGAQ-T--Y--PNVTFGWVNVKDV 236 (281)
Q Consensus 164 ~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~--~~~~~~~~~~~~~~-~--~--~~~~~~~i~~~D~ 236 (281)
.+.|+.+|.++|.+++.++.+++++++++|+.++|||+...... .....+.+...+.. . . +.+.++|+|++|+
T Consensus 148 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Dv 227 (345)
T 2z1m_A 148 RSPYAVAKLFGHWITVNYREAYNMFACSGILFNHESPLRGIEFVTRKITYSLARIKYGLQDKLVLGNLNAKRDWGYAPEY 227 (345)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEECCEEHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHhCCceEeeeeeeecCCCCCCcchhHHHHHHHHHHHcCCCCeeeeCCCCceeeeEEHHHH
Confidence 35699999999999999998889999999999999997543211 01222333445532 1 2 3567899999999
Q ss_pred HHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 237 ANAHIQAFEVPSANGRYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 237 a~~i~~~~~~~~~~g~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
|++++.+++++. .+.||++ ++.+++.|+++.+.+.+|.
T Consensus 228 a~a~~~~~~~~~-~~~~~i~~~~~~s~~e~~~~i~~~~g~ 266 (345)
T 2z1m_A 228 VEAMWLMMQQPE-PDDYVIATGETHTVREFVEKAAKIAGF 266 (345)
T ss_dssp HHHHHHHHTSSS-CCCEEECCSCCEEHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCC-CceEEEeCCCCccHHHHHHHHHHHhCC
Confidence 999999998765 4789986 5789999999999999875
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-37 Score=267.59 Aligned_cols=247 Identities=18% Similarity=0.196 Sum_probs=190.8
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
.+++|+|||||||||||++|+++|+++| ++|++++|...... ...+ .++. +.+|++|.+.++.+++
T Consensus 43 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-~~~~-------~~~~-~~~d~~~~~~~~~~~~~~~~ 113 (357)
T 2x6t_A 43 GIEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK-FVNL-------VDLN-IADYMDKEDFLIQIMAGEEF 113 (357)
T ss_dssp -----CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGG-GGGT-------TTSC-CSEEEEHHHHHHHHHTTCCC
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcch-hhcc-------cCce-EeeecCcHHHHHHHHhhccc
Confidence 3456899999999999999999999999 99999999764321 1111 1222 6789999888988887
Q ss_pred -CCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhh
Q 023515 81 -GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEV 159 (281)
Q Consensus 81 -~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~ 159 (281)
++|+|||+|+.... ....++..+++|+.++.+++++|.+. ++ +|||+||..++. . ....+++|+++..|
T Consensus 114 ~~~d~Vih~A~~~~~-~~~~~~~~~~~n~~~~~~ll~a~~~~-~~-r~V~~SS~~v~g-~----~~~~~~~E~~~~~p-- 183 (357)
T 2x6t_A 114 GDVEAIFHEGACSST-TEWDGKYMMDNNYQYSKELLHYCLER-EI-PFLYASSAATYG-G----RTSDFIESREYEKP-- 183 (357)
T ss_dssp SSCCEEEECCSCCCT-TCCCHHHHHHHTHHHHHHHHHHHHHH-TC-CEEEEEEGGGGC-S----CSSCCCSSGGGCCC--
T ss_pred CCCCEEEECCcccCC-ccCCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEcchHHhC-C----CCCCCcCCcCCCCC--
Confidence 59999999997554 33455689999999999999999997 77 999999987754 2 12235677765543
Q ss_pred hccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCC---CccHHHHHHHHhCCCC--C--CCC-Cccce
Q 023515 160 CKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL---NTSAAAVLSLIKGAQT--Y--PNV-TFGWV 231 (281)
Q Consensus 160 ~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~---~~~~~~~~~~~~~~~~--~--~~~-~~~~i 231 (281)
.+.|+.+|.++|.+++.+++++|++++++||+.+|||...+.. .....++..+..+.+. + +.+ .++|+
T Consensus 184 ----~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 259 (357)
T 2x6t_A 184 ----LNVFGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFV 259 (357)
T ss_dssp ----SSHHHHHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCTTCGGGSCHHHHHHHHHHTTCCCEEETTGGGCEECEE
T ss_pred ----CChhHHHHHHHHHHHHHHHHHcCCCEEEEecCeEECCCCCCCcccchHHHHHHHHHHcCCCcEEeCCCCcceEccE
Confidence 3679999999999999998888999999999999999754321 2233445555565532 2 356 78999
Q ss_pred eHHHHHHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCC
Q 023515 232 NVKDVANAHIQAFEVPSANGRYCLV-ERVSHYSEIVNIIRELYPAF 276 (281)
Q Consensus 232 ~~~D~a~~i~~~~~~~~~~g~~~~~-~~~~t~~e~~~~i~~~~~~~ 276 (281)
|++|+|++++.+++++. +++||++ ++.+++.|+++.+.+.+|..
T Consensus 260 ~v~Dva~ai~~~~~~~~-~~~~~i~~~~~~s~~e~~~~i~~~~g~~ 304 (357)
T 2x6t_A 260 YVGDVADVNLWFLENGV-SGIFNLGTGRAESFQAVADATLAYHKKG 304 (357)
T ss_dssp EHHHHHHHHHHHHHHCC-CEEEEESCSCCEEHHHHHHHHHHHHTCC
T ss_pred EHHHHHHHHHHHHhcCC-CCeEEecCCCcccHHHHHHHHHHHcCCC
Confidence 99999999999998776 6799997 47899999999999998754
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=264.72 Aligned_cols=254 Identities=17% Similarity=0.143 Sum_probs=194.7
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCc--chhhhhhhccC--CCCcEEEEEcCCCCcCcHHHHhcC--C
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP--KKTRHLLALDG--ASERLQLFKANLLEEGSFDSIVDG--C 82 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~--~ 82 (281)
+|+|||||||||||++++++|+++|++|++++|+.... ..+..+..... ...+++++++|++|++++.+++++ +
T Consensus 24 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 103 (375)
T 1t2a_A 24 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKP 103 (375)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCEEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhcCC
Confidence 37899999999999999999999999999999986542 12222110000 124688999999999999998885 6
Q ss_pred cEeEEecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCc---cEEEEeccceeeecCCCCCCCCeeeecCCCCChh
Q 023515 83 DGVCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSI---KRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPE 158 (281)
Q Consensus 83 d~Vih~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~---~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~ 158 (281)
|+|||+||..... ....++..+++|+.++.+++++|.+. ++ ++|||+||.+++... ...+++|+++..|
T Consensus 104 d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~-~~~~~~~iv~~SS~~~~~~~-----~~~~~~E~~~~~~- 176 (375)
T 1t2a_A 104 TEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTC-GLINSVKFYQASTSELYGKV-----QEIPQKETTPFYP- 176 (375)
T ss_dssp SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHT-TCTTTCEEEEEEEGGGTCSC-----SSSSBCTTSCCCC-
T ss_pred CEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHh-CCCccceEEEecchhhhCCC-----CCCCCCccCCCCC-
Confidence 9999999964321 11234578899999999999999997 55 799999998776421 2346778776554
Q ss_pred hhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCC--ccHHHHHHHHhCC-CC----CCCCCccce
Q 023515 159 VCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLN--TSAAAVLSLIKGA-QT----YPNVTFGWV 231 (281)
Q Consensus 159 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~--~~~~~~~~~~~~~-~~----~~~~~~~~i 231 (281)
.+.|+.+|.++|.+++.++++++++++++||+++|||...+... .....+..+..+. +. .+++.++|+
T Consensus 177 -----~~~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~i 251 (375)
T 1t2a_A 177 -----RSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWG 251 (375)
T ss_dssp -----CSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEESCTTCEECCE
T ss_pred -----CChhHHHHHHHHHHHHHHHHHhCCCEEEEecccccCCCCCCCcchHHHHHHHHHHHcCCCceeEeCCCCceeeeE
Confidence 35699999999999999998889999999999999997543221 1123344455554 21 246789999
Q ss_pred eHHHHHHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 232 NVKDVANAHIQAFEVPSANGRYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 232 ~~~D~a~~i~~~~~~~~~~g~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
|++|+|++++.+++++. .+.||++ ++.+|+.|+++.+.+.+|.
T Consensus 252 ~v~Dva~a~~~~~~~~~-~~~~ni~~~~~~s~~e~~~~i~~~~g~ 295 (375)
T 1t2a_A 252 HAKDYVEAMWLMLQNDE-PEDFVIATGEVHSVREFVEKSFLHIGK 295 (375)
T ss_dssp EHHHHHHHHHHHHHSSS-CCCEEECCSCCEEHHHHHHHHHHHTTC
T ss_pred EHHHHHHHHHHHHhcCC-CceEEEeCCCcccHHHHHHHHHHHhCC
Confidence 99999999999998765 4789987 5789999999999999875
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-37 Score=263.27 Aligned_cols=239 Identities=15% Similarity=0.120 Sum_probs=186.0
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcC--CcE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG--CDG 84 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~d~ 84 (281)
|+||+|||||||||||++|+++|+++|+ +.... ...++++++|++|++.+.+++++ +|+
T Consensus 4 ~~~~~vlVtGatG~iG~~l~~~L~~~g~------~~~~~-------------~~~~~~~~~D~~d~~~~~~~~~~~~~d~ 64 (319)
T 4b8w_A 4 FQSMRILVTGGSGLVGKAIQKVVADGAG------LPGED-------------WVFVSSKDADLTDTAQTRALFEKVQPTH 64 (319)
T ss_dssp CCCCEEEEETCSSHHHHHHHHHHHTTTC------CTTCE-------------EEECCTTTCCTTSHHHHHHHHHHSCCSE
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhcCC------ccccc-------------ccccCceecccCCHHHHHHHHhhcCCCE
Confidence 5588999999999999999999999998 11110 02345567999999999999986 999
Q ss_pred eEEecccCCC--CCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCC----CCChh
Q 023515 85 VCHTASPFYH--DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETW----FSDPE 158 (281)
Q Consensus 85 Vih~a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~----~~~~~ 158 (281)
|||+|+.... .....+...+++|+.++.+++++|++. ++++|||+||.++|.. ....+++|++ ++.|.
T Consensus 65 Vih~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~-~~~~~v~~SS~~vyg~-----~~~~~~~E~~~~~~~~~p~ 138 (319)
T 4b8w_A 65 VIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEV-GARKVVSCLSTCIFPD-----KTTYPIDETMIHNGPPHNS 138 (319)
T ss_dssp EEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCSEEEEECCGGGSCS-----SCCSSBCGGGGGBSCCCSS
T ss_pred EEECceecccccccccCHHHHHHHHHHHHHHHHHHHHHc-CCCeEEEEcchhhcCC-----CCCCCccccccccCCCCCC
Confidence 9999997441 123344588999999999999999998 8899999999876642 2344567775 33321
Q ss_pred hhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCC---CccHHHHHH----HHhCCC----CCCCCC
Q 023515 159 VCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL---NTSAAAVLS----LIKGAQ----TYPNVT 227 (281)
Q Consensus 159 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~---~~~~~~~~~----~~~~~~----~~~~~~ 227 (281)
..+|+.+|.++|.+++.++++++++++++||+++|||...+.. .....++.+ ...+.+ ..+++.
T Consensus 139 -----~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 213 (319)
T 4b8w_A 139 -----NFGYSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSGSALTVWGTGNPR 213 (319)
T ss_dssp -----SHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCCCTTTSCHHHHHHHHHHHHHHHTCCEEEESCSCCE
T ss_pred -----cchHHHHHHHHHHHHHHHHHhhCCCEEEEeeccccCCCCCCCCccccccHHHHHHHHHHhccCCceEEeCCCCee
Confidence 2259999999999999999888999999999999999865432 123344444 455553 235788
Q ss_pred ccceeHHHHHHHHHHhhcCCCC--CccEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 228 FGWVNVKDVANAHIQAFEVPSA--NGRYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~~--~g~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
++|+|++|+|++++.+++++.. +++||++ ++.+|+.|+++.+.+.+|.
T Consensus 214 ~~~i~v~Dva~a~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~ 264 (319)
T 4b8w_A 214 RQFIYSLDLAQLFIWVLREYNEVEPIILSVGEEDEVSIKEAAEAVVEAMDF 264 (319)
T ss_dssp ECEEEHHHHHHHHHHHHHHCCCSSCEEECCCGGGCEEHHHHHHHHHHHTTC
T ss_pred EEEEeHHHHHHHHHHHHhccccCCceEEEecCCCceeHHHHHHHHHHHhCC
Confidence 9999999999999999987443 3488886 5899999999999999874
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-37 Score=268.30 Aligned_cols=259 Identities=20% Similarity=0.202 Sum_probs=191.6
Q ss_pred CCeEEEeCCchHHHHHHHHHHH-HCCCEEEEEEcCCCCc---------chhhhhhh-ccCC--CCc---EEEEEcCCCCc
Q 023515 9 GKVVCVTGASGYIASWLVKLLL-SRGYTVKASVRDPNDP---------KKTRHLLA-LDGA--SER---LQLFKANLLEE 72 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~-~~g~~V~~~~r~~~~~---------~~~~~~~~-~~~~--~~~---~~~~~~D~~~~ 72 (281)
+|+|||||||||||++++++|+ ++|++|++++|..... ..+..... .... ..+ ++++.+|++|+
T Consensus 2 ~m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~ 81 (397)
T 1gy8_A 2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE 81 (397)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCCH
Confidence 4689999999999999999999 9999999999976442 22211111 1110 124 88999999999
Q ss_pred CcHHHHhc--C-CcEeEEecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCC---CCC
Q 023515 73 GSFDSIVD--G-CDGVCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKP---RTP 145 (281)
Q Consensus 73 ~~~~~~~~--~-~d~Vih~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~---~~~ 145 (281)
+.+.++++ + +|+|||+|+..... ....++..+++|+.++.+++++|++. ++++|||+||.+++. .... ...
T Consensus 82 ~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~-~~~~iv~~SS~~v~g-~~~~~~~~~~ 159 (397)
T 1gy8_A 82 DFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLH-KCDKIIFSSSAAIFG-NPTMGSVSTN 159 (397)
T ss_dssp HHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEEEEGGGTB-SCCC-----C
T ss_pred HHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHh-CCCEEEEECCHHHhC-CCCccccccc
Confidence 99999887 6 99999999974321 12334588999999999999999997 788999999987654 2110 001
Q ss_pred CeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCC-------CCccHHHHH----
Q 023515 146 DVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPT-------LNTSAAAVL---- 214 (281)
Q Consensus 146 ~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~-------~~~~~~~~~---- 214 (281)
..+++|+++..| .+.|+.+|.++|.+++.++.++|++++++||+++|||..... .......+.
T Consensus 160 ~~~~~E~~~~~p------~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~ 233 (397)
T 1gy8_A 160 AEPIDINAKKSP------ESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVM 233 (397)
T ss_dssp CCCBCTTSCCBC------SSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHH
T ss_pred ccCcCccCCCCC------CCchHHHHHHHHHHHHHHHHHHCCcEEEEeccceeCCCccccccccccchhHHHHHHHHHHH
Confidence 356778776543 367999999999999999888899999999999999964211 111222222
Q ss_pred -HHHhCCC--------------C--------CCCCCccceeHHHHHHHHHHhhcCCC-C-----C---ccEEEe-cCCCC
Q 023515 215 -SLIKGAQ--------------T--------YPNVTFGWVNVKDVANAHIQAFEVPS-A-----N---GRYCLV-ERVSH 261 (281)
Q Consensus 215 -~~~~~~~--------------~--------~~~~~~~~i~~~D~a~~i~~~~~~~~-~-----~---g~~~~~-~~~~t 261 (281)
+...+.. . .+++.++|+|++|+|++++.+++++. . . ++||++ ++.+|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~ni~~~~~~s 313 (397)
T 1gy8_A 234 SDIAPDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYS 313 (397)
T ss_dssp HHHSCC-----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSCCEE
T ss_pred HHHHhcCccccccccccCCCceeecCcccCCCCCeeEeeEeHHHHHHHHHHHHhcccccccccccCCCcEEEeCCCCccc
Confidence 3323321 1 24677899999999999999987532 1 2 689987 57899
Q ss_pred HHHHHHHHHHhCCC
Q 023515 262 YSEIVNIIRELYPA 275 (281)
Q Consensus 262 ~~e~~~~i~~~~~~ 275 (281)
+.|+++.+.+.+|.
T Consensus 314 ~~e~~~~i~~~~g~ 327 (397)
T 1gy8_A 314 VREVIEVARKTTGH 327 (397)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999998874
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-36 Score=257.87 Aligned_cols=254 Identities=19% Similarity=0.247 Sum_probs=188.7
Q ss_pred hhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcc-hhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCC
Q 023515 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPK-KTRHLLALDGASERLQLFKANLLEEGSFDSIVDGC 82 (281)
Q Consensus 4 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 82 (281)
++++++|+|||||||||||++|+++|+++|++|++++|...... .+..+. ...++.++.+|+.+.. +.++
T Consensus 22 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~-----~~~~ 92 (343)
T 2b69_A 22 HMEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWI----GHENFELINHDVVEPL-----YIEV 92 (343)
T ss_dssp -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGT----TCTTEEEEECCTTSCC-----CCCC
T ss_pred ccccCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCCccchhhhhhhc----cCCceEEEeCccCChh-----hcCC
Confidence 34567899999999999999999999999999999999754322 111111 1246899999998753 4689
Q ss_pred cEeEEecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhc
Q 023515 83 DGVCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCK 161 (281)
Q Consensus 83 d~Vih~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 161 (281)
|+|||+|+..... ....++..+++|+.++.+++++|++. +. +|||+||.++|... ...+++|+.+.... +.
T Consensus 93 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~-~~v~~SS~~v~g~~-----~~~~~~E~~~~~~~-~~ 164 (343)
T 2b69_A 93 DQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRV-GA-RLLLASTSEVYGDP-----EVHPQSEDYWGHVN-PI 164 (343)
T ss_dssp SEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHH-TC-EEEEEEEGGGGBSC-----SSSSBCTTCCCBCC-SS
T ss_pred CEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHh-CC-cEEEECcHHHhCCC-----CCCCCcccccccCC-CC
Confidence 9999999874321 12344578899999999999999997 65 89999998766421 23345666422111 11
Q ss_pred cCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCC-CccHHHHHHHHhCCCC--C--CCCCccceeHHHH
Q 023515 162 QSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL-NTSAAAVLSLIKGAQT--Y--PNVTFGWVNVKDV 236 (281)
Q Consensus 162 ~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~-~~~~~~~~~~~~~~~~--~--~~~~~~~i~~~D~ 236 (281)
.+.+.|+.+|.++|.+++.++++++++++++||+.+|||...+.. .....++.....+.+. + +++.++|+|++|+
T Consensus 165 ~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dv 244 (343)
T 2b69_A 165 GPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDL 244 (343)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEESSSCCEEECEEHHHH
T ss_pred CCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEEcceeCcCCCCCcccHHHHHHHHHHcCCCceEcCCCCeEEeeEeHHHH
Confidence 123569999999999999998888999999999999999765322 2234455566666532 2 4678899999999
Q ss_pred HHHHHHhhcCCCCCccEEEec-CCCCHHHHHHHHHHhCCC
Q 023515 237 ANAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 237 a~~i~~~~~~~~~~g~~~~~~-~~~t~~e~~~~i~~~~~~ 275 (281)
|++++.+++.+. ++.||+++ +.+|+.|+++.+.+.+|.
T Consensus 245 a~a~~~~~~~~~-~~~~~i~~~~~~s~~e~~~~i~~~~g~ 283 (343)
T 2b69_A 245 VNGLVALMNSNV-SSPVNLGNPEEHTILEFAQLIKNLVGS 283 (343)
T ss_dssp HHHHHHHHTSSC-CSCEEESCCCEEEHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCC-CCeEEecCCCCCcHHHHHHHHHHHhCC
Confidence 999999998653 56899875 789999999999999874
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-37 Score=265.20 Aligned_cols=254 Identities=18% Similarity=0.217 Sum_probs=193.5
Q ss_pred CeEEEeCCchHHHHHHHHHHHHC-CCEEEEEEcCCC--CcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--CCcE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSR-GYTVKASVRDPN--DPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDG 84 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~ 84 (281)
|+|||||||||||++++++|+++ |++|++++|... ....+..+. ...+++++.+|++|.+++.++++ ++|+
T Consensus 1 MkvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 76 (361)
T 1kew_A 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDIS----ESNRYNFEHADICDSAEITRIFEQYQPDA 76 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTT----TCTTEEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred CEEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCchhhhhhhh----cCCCeEEEECCCCCHHHHHHHHhhcCCCE
Confidence 37999999999999999999998 799999999752 222222211 12478999999999999999998 8999
Q ss_pred eEEecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCC-Ccc-------EEEEeccceeeecCCCC-----CCCCeeee
Q 023515 85 VCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFP-SIK-------RVVLTSSMAAVLNTGKP-----RTPDVVVD 150 (281)
Q Consensus 85 Vih~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~-------~~v~~SS~~~~~~~~~~-----~~~~~~~~ 150 (281)
|||+||..... ....++..+++|+.++.+++++|.+.+ +++ +|||+||.+++...... .....+++
T Consensus 77 vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~~~~~~ 156 (361)
T 1kew_A 77 VMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFT 156 (361)
T ss_dssp EEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBC
T ss_pred EEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccccccccccCCCCC
Confidence 99999974321 123345889999999999999999852 444 99999998766421100 00011567
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCC--C--CCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--T--YPNV 226 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~--~--~~~~ 226 (281)
|+++..| .+.|+.+|.++|.+++.++.++|++++++||+.+|||...+. ......+.....+.+ . .+.+
T Consensus 157 E~~~~~~------~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 229 (361)
T 1kew_A 157 ETTAYAP------SSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPE-KLIPLVILNALEGKPLPIYGKGDQ 229 (361)
T ss_dssp TTSCCCC------CSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTT-SHHHHHHHHHHHTCCEEEETTSCC
T ss_pred CCCCCCC------CCccHHHHHHHHHHHHHHHHHhCCcEEEEeeceeECCCCCcc-cHHHHHHHHHHcCCCceEcCCCce
Confidence 7765543 367999999999999999888899999999999999985432 223445555666652 2 2467
Q ss_pred CccceeHHHHHHHHHHhhcCCCCCccEEEec-CCCCHHHHHHHHHHhCC
Q 023515 227 TFGWVNVKDVANAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYP 274 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~~~g~~~~~~-~~~t~~e~~~~i~~~~~ 274 (281)
.++|+|++|+|++++.+++++..+++||+++ ..+++.|+++.+.+.+|
T Consensus 230 ~~~~i~v~Dva~a~~~~~~~~~~g~~~~v~~~~~~s~~e~~~~i~~~~g 278 (361)
T 1kew_A 230 IRDWLYVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLD 278 (361)
T ss_dssp EEEEEEHHHHHHHHHHHHHHCCTTCEEEECCCCEEEHHHHHHHHHHHHH
T ss_pred eEeeEEHHHHHHHHHHHHhCCCCCCEEEecCCCeeeHHHHHHHHHHHhC
Confidence 7899999999999999998765555899975 67999999999998875
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-37 Score=265.71 Aligned_cols=255 Identities=14% Similarity=0.131 Sum_probs=188.8
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC-Ccc-hhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcC--CcE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN-DPK-KTRHLLALDGASERLQLFKANLLEEGSFDSIVDG--CDG 84 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~d~ 84 (281)
||+|||||||||||++++++|+++|++|++++|... ... ....+. . ..+++++++|++|++++.+++++ +|+
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~-~---~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 76 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLS-S---LGNFEFVHGDIRNKNDVTRLITKYMPDS 76 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHH-T---TCCCEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred CcEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhc-c---CCceEEEEcCCCCHHHHHHHHhccCCCE
Confidence 468999999999999999999999999999998542 211 111111 1 13588999999999999999987 999
Q ss_pred eEEecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCcc-EEEEeccceeeecCCCCCC------------CCeeee
Q 023515 85 VCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIK-RVVLTSSMAAVLNTGKPRT------------PDVVVD 150 (281)
Q Consensus 85 Vih~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~v~~SS~~~~~~~~~~~~------------~~~~~~ 150 (281)
|||+||..... ....++..+++|+.++.+++++|++. +.+ +|||+||.++|.... ... ....++
T Consensus 77 vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~-~~~~~iv~~SS~~v~g~~~-~~~~~e~~~~~~~~~~~~~~~ 154 (347)
T 1orr_A 77 CFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQY-NSNCNIIYSSTNKVYGDLE-QYKYNETETRYTCVDKPNGYD 154 (347)
T ss_dssp EEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEEEEEGGGGTTCT-TSCEEECSSCEEETTCTTCBC
T ss_pred EEECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEeccHHHhCCCC-cCCcccccccccccccccCcc
Confidence 99999964321 11244588999999999999999997 554 999999987664211 100 001244
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCC--ccHHHHHHHHhCC-----C--
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLN--TSAAAVLSLIKGA-----Q-- 221 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~--~~~~~~~~~~~~~-----~-- 221 (281)
|+.+..| .+.|+.+|.++|.+++.+++++|++++++||+.+|||....... ....++.....+. +
T Consensus 155 e~~~~~~------~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (347)
T 1orr_A 155 ESTQLDF------HSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFT 228 (347)
T ss_dssp TTSCCCC------CHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEE
T ss_pred ccCCCCC------CCchHHHHHHHHHHHHHHHHHhCCcEEEEccCceeCcCCCCCCcCcHHHHHHHHHHhCcccCCCCeE
Confidence 4444332 35699999999999999988889999999999999997543211 2233444444332 2
Q ss_pred --CCCCCCccceeHHHHHHHHHHhhcCC-CCCc-cEEEecC---CCCHHHHHHHHHHhCCC
Q 023515 222 --TYPNVTFGWVNVKDVANAHIQAFEVP-SANG-RYCLVER---VSHYSEIVNIIRELYPA 275 (281)
Q Consensus 222 --~~~~~~~~~i~~~D~a~~i~~~~~~~-~~~g-~~~~~~~---~~t~~e~~~~i~~~~~~ 275 (281)
..+++.++|+|++|+|++++.++++. ...| +|+++++ .+|+.|+++.+.+.+|.
T Consensus 229 ~~g~g~~~~~~i~v~Dva~a~~~~~~~~~~~~g~~~~v~~~~~~~~s~~e~~~~i~~~~g~ 289 (347)
T 1orr_A 229 ISGNGKQVRDVLHAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNI 289 (347)
T ss_dssp EESSSCCEEECEEHHHHHHHHHHHHHTHHHHTTCEEEESSCGGGEEEHHHHHHHHHHHHTC
T ss_pred EecCCcceEeeEEHHHHHHHHHHHHhccccCCCCEEEeCCCCCCCccHHHHHHHHHHHhCC
Confidence 12567889999999999999999862 2334 8999764 48999999999999874
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-36 Score=261.06 Aligned_cols=254 Identities=16% Similarity=0.158 Sum_probs=191.3
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCc--chhhhhhhcc-CCCCcEEEEEcCCCCcCcHHHHhcC--Cc
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP--KKTRHLLALD-GASERLQLFKANLLEEGSFDSIVDG--CD 83 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~--~d 83 (281)
||+|||||||||||++++++|+++|++|++++|+.... ..+..+.... ....+++++++|++|++++.+++++ +|
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD 80 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcCCC
Confidence 57899999999999999999999999999999976532 2222111100 0124688999999999999998885 79
Q ss_pred EeEEecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCc---cEEEEeccceeeecCCCCCCCCeeeecCCCCChhh
Q 023515 84 GVCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSI---KRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEV 159 (281)
Q Consensus 84 ~Vih~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~---~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~ 159 (281)
+|||+||..... ..+.++..+++|+.++.+++++|.+. ++ ++|||+||.+++... ...+++|+++..|
T Consensus 81 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~~iv~~SS~~v~g~~-----~~~~~~E~~~~~~-- 152 (372)
T 1db3_A 81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFL-GLEKKTRFYQASTSELYGLV-----QEIPQKETTPFYP-- 152 (372)
T ss_dssp EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHT-TCTTTCEEEEEEEGGGGTTC-----CSSSBCTTSCCCC--
T ss_pred EEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHh-CCCCCcEEEEeCChhhhCCC-----CCCCCCccCCCCC--
Confidence 999999974322 23445578899999999999999997 65 799999998776421 2345677776554
Q ss_pred hccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCC--ccHHHHHHHHhCCC-C----CCCCCcccee
Q 023515 160 CKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLN--TSAAAVLSLIKGAQ-T----YPNVTFGWVN 232 (281)
Q Consensus 160 ~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~--~~~~~~~~~~~~~~-~----~~~~~~~~i~ 232 (281)
.+.|+.+|.++|.+++.++++++++++++|++++|||....... .....+..+..+.+ . .+++.++|+|
T Consensus 153 ----~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~ 228 (372)
T 1db3_A 153 ----RSPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGH 228 (372)
T ss_dssp ----CSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEESCTTCEECCEE
T ss_pred ----CChHHHHHHHHHHHHHHHHHHhCCCeEEEEECCccCCCCCCcchhhHHHHHHHHHHcCCCCceeecCCCceeeeeE
Confidence 35799999999999999998889999999999999997543221 12233444555542 1 2477899999
Q ss_pred HHHHHHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 233 VKDVANAHIQAFEVPSANGRYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 233 ~~D~a~~i~~~~~~~~~~g~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
++|+|++++.+++++. .+.||++ ++.+|+.|+++.+.+.+|.
T Consensus 229 v~Dva~a~~~~~~~~~-~~~~ni~~~~~~s~~e~~~~i~~~~g~ 271 (372)
T 1db3_A 229 AKDYVKMQWMMLQQEQ-PEDFVIATGVQYSVRQFVEMAAAQLGI 271 (372)
T ss_dssp HHHHHHHHHHTTSSSS-CCCEEECCCCCEEHHHHHHHHHHTTTE
T ss_pred HHHHHHHHHHHHhcCC-CceEEEcCCCceeHHHHHHHHHHHhCC
Confidence 9999999999998765 4789987 5789999999999999874
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=261.09 Aligned_cols=249 Identities=14% Similarity=0.115 Sum_probs=195.0
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCC-------CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHh
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRG-------YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV 79 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 79 (281)
+++|+|||||||||||++++++|+++| ++|++++|+...... . ...++.++++|++|++.+.+++
T Consensus 12 ~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~------~--~~~~~~~~~~Dl~d~~~~~~~~ 83 (342)
T 2hrz_A 12 FQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA------G--FSGAVDARAADLSAPGEAEKLV 83 (342)
T ss_dssp CSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT------T--CCSEEEEEECCTTSTTHHHHHH
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc------c--cCCceeEEEcCCCCHHHHHHHH
Confidence 567899999999999999999999999 899999998654321 0 1246899999999999999988
Q ss_pred c-CCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCC-----ccEEEEeccceeeecCCCCCCCCeeeecCC
Q 023515 80 D-GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS-----IKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (281)
Q Consensus 80 ~-~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-----~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~ 153 (281)
+ ++|+|||+||.......+.++..+++|+.++.+++++|++. + +++|||+||..++... ...+++|++
T Consensus 84 ~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~-~~~~~~~~~iv~~SS~~~~~~~-----~~~~~~E~~ 157 (342)
T 2hrz_A 84 EARPDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIA-NGKDGYKPRVVFTSSIAVFGAP-----LPYPIPDEF 157 (342)
T ss_dssp HTCCSEEEECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHH-HHHHCCCCEEEEEEEGGGCCSS-----CCSSBCTTC
T ss_pred hcCCCEEEECCccCcccccccHHHHHHHHHHHHHHHHHHHHhc-ccccCCCcEEEEeCchHhhCCC-----CCCCcCCCC
Confidence 5 89999999997542222345688999999999999999986 4 6899999998765421 124578887
Q ss_pred CCChhhhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccC-CCCCCCC--CccHHHHHHHHhCCC----CCCCC
Q 023515 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIG-PLLQPTL--NTSAAAVLSLIKGAQ----TYPNV 226 (281)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g-~~~~~~~--~~~~~~~~~~~~~~~----~~~~~ 226 (281)
+..| .+.|+.+|.++|.+++.++++++++.+++|++.+|| |+..... ......+.....+.+ ..++.
T Consensus 158 ~~~~------~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (342)
T 2hrz_A 158 HTTP------LTSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPGKPNAAASGFFSNILREPLVGQEAVLPVPESI 231 (342)
T ss_dssp CCCC------SSHHHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTCCSSCCCSGGGHHHHHHHHHHTTCCEEECSCTTC
T ss_pred CCCC------cchHHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEecCCCCcchhHHHHHHHHHHHhcCCCeeccCCCcc
Confidence 7654 356999999999999999888889999999999998 6532211 122334455555552 22345
Q ss_pred CccceeHHHHHHHHHHhhcCCC----CCccEEEecCCCCHHHHHHHHHHhCCC
Q 023515 227 TFGWVNVKDVANAHIQAFEVPS----ANGRYCLVERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~----~~g~~~~~~~~~t~~e~~~~i~~~~~~ 275 (281)
..+++|++|+|++++.+++.+. .++.||++++.+|+.|+++.+.+.+|.
T Consensus 232 ~~~~~~v~Dva~~~~~~~~~~~~~~~~~~~~ni~g~~~s~~e~~~~i~~~~g~ 284 (342)
T 2hrz_A 232 RHWHASPRSAVGFLIHGAMIDVEKVGPRRNLSMPGLSATVGEQIEALRKVAGE 284 (342)
T ss_dssp EEEEECHHHHHHHHHHHHHSCHHHHCSCCEEECCCEEEEHHHHHHHHHHHHCH
T ss_pred ceeeEehHHHHHHHHHHHhccccccCCccEEEcCCCCCCHHHHHHHHHHHcCc
Confidence 6678999999999999998764 345899987789999999999998764
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=259.62 Aligned_cols=234 Identities=14% Similarity=0.146 Sum_probs=185.2
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--CCcEeE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVC 86 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~Vi 86 (281)
+|+|||||||||||++++++|+++|++|++++|+. .+|++|.+++.++++ ++|+||
T Consensus 3 ~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~----------------------~~D~~d~~~~~~~~~~~~~d~vi 60 (321)
T 1e6u_A 3 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD----------------------ELNLLDSRAVHDFFASERIDQVY 60 (321)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT----------------------TCCTTCHHHHHHHHHHHCCSEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCc----------------------cCCccCHHHHHHHHHhcCCCEEE
Confidence 57899999999999999999999999999987752 168999999999998 999999
Q ss_pred EecccCCC--CCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCC----CChhhh
Q 023515 87 HTASPFYH--DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWF----SDPEVC 160 (281)
Q Consensus 87 h~a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~----~~~~~~ 160 (281)
|+|+.... .....++..+++|+.++.+++++|.+. ++++|||+||..+|... ...+++|+++ ..|.
T Consensus 61 h~a~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~SS~~vyg~~-----~~~~~~E~~~~~~~~~p~-- 132 (321)
T 1e6u_A 61 LAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQN-DVNKLLFLGSSCIYPKL-----AKQPMAESELLQGTLEPT-- 132 (321)
T ss_dssp ECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEECCGGGSCTT-----CCSSBCGGGTTSSCCCGG--
T ss_pred EcCeecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccHHHcCCC-----CCCCcCccccccCCCCCC--
Confidence 99987431 112234578899999999999999997 78899999998776421 2345677653 2221
Q ss_pred ccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCC---CccHHHHHHHHh----C-CC----CCCCCCc
Q 023515 161 KQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL---NTSAAAVLSLIK----G-AQ----TYPNVTF 228 (281)
Q Consensus 161 ~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~---~~~~~~~~~~~~----~-~~----~~~~~~~ 228 (281)
.+.|+.+|.++|.+++.++++++++++++||+.+|||...+.. .....++..+.. | .+ ..+++.+
T Consensus 133 ---~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~ 209 (321)
T 1e6u_A 133 ---NEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMR 209 (321)
T ss_dssp ---GHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEESCSCCEE
T ss_pred ---CCccHHHHHHHHHHHHHHHHHhCCCEEEEEeCCcCCcCCCCCCCCCccHHHHHHHHHHhhhcCCCceEEcCCCCEEE
Confidence 2469999999999999998888999999999999999865321 223344444432 3 22 2257789
Q ss_pred cceeHHHHHHHHHHhhcCCCC---------CccEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 229 GWVNVKDVANAHIQAFEVPSA---------NGRYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 229 ~~i~~~D~a~~i~~~~~~~~~---------~g~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
+|+|++|+|++++.+++++.. +++||++ ++.+|+.|+++.+.+.+|.
T Consensus 210 ~~i~v~Dva~~~~~~~~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~ 266 (321)
T 1e6u_A 210 EFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGY 266 (321)
T ss_dssp CEEEHHHHHHHHHHHHHSCHHHHHHTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTC
T ss_pred EeEEHHHHHHHHHHHHhCcccccccccccCCceEEeCCCCCccHHHHHHHHHHHhCC
Confidence 999999999999999987654 3699986 5789999999999999874
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-36 Score=257.18 Aligned_cols=244 Identities=17% Similarity=0.226 Sum_probs=187.7
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--CCc
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCD 83 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d 83 (281)
.+++|+|||||||||||++++++|+++|++|++++|+.......... ..+++++.+|++|.+++.++++ ++|
T Consensus 17 ~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~------l~~v~~~~~Dl~d~~~~~~~~~~~~~D 90 (330)
T 2pzm_A 17 RGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPP------VAGLSVIEGSVTDAGLLERAFDSFKPT 90 (330)
T ss_dssp TTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCS------CTTEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhc------cCCceEEEeeCCCHHHHHHHHhhcCCC
Confidence 45688999999999999999999999999999999975443211110 1368999999999999999998 999
Q ss_pred EeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccC
Q 023515 84 GVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQS 163 (281)
Q Consensus 84 ~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 163 (281)
+|||+||.........+ . +++|+.++.+++++|.+. ++++|||+||.+++.... ....+++|++ . +
T Consensus 91 ~vih~A~~~~~~~~~~~-~-~~~N~~~~~~l~~a~~~~-~~~~iV~~SS~~~~~~~~---~~~~~~~E~~--~------~ 156 (330)
T 2pzm_A 91 HVVHSAAAYKDPDDWAE-D-AATNVQGSINVAKAASKA-GVKRLLNFQTALCYGRPA---TVPIPIDSPT--A------P 156 (330)
T ss_dssp EEEECCCCCSCTTCHHH-H-HHHHTHHHHHHHHHHHHH-TCSEEEEEEEGGGGCSCS---SSSBCTTCCC--C------C
T ss_pred EEEECCccCCCccccCh-h-HHHHHHHHHHHHHHHHHc-CCCEEEEecCHHHhCCCc---cCCCCcCCCC--C------C
Confidence 99999997543222333 3 899999999999999987 788999999987754211 1011456665 2 2
Q ss_pred CchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCC-CccceeHHHHHH-HHH
Q 023515 164 ELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV-TFGWVNVKDVAN-AHI 241 (281)
Q Consensus 164 ~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~D~a~-~i~ 241 (281)
.+.|+.+|.++|.+++.+ +++.+++||+++|||+.. ......++.....+...+++. .++|+|++|+|+ +++
T Consensus 157 ~~~Y~~sK~~~e~~~~~~----~~~~~~iR~~~v~gp~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~a~~ 230 (330)
T 2pzm_A 157 FTSYGISKTAGEAFLMMS----DVPVVSLRLANVTGPRLA--IGPIPTFYKRLKAGQKCFCSDTVRDFLDMSDFLAIADL 230 (330)
T ss_dssp CSHHHHHHHHHHHHHHTC----SSCEEEEEECEEECTTCC--SSHHHHHHHHHHTTCCCCEESCEECEEEHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHc----CCCEEEEeeeeeECcCCC--CCHHHHHHHHHHcCCEEeCCCCEecceeHHHHHHHHHH
Confidence 356999999999998665 799999999999999852 222333444454554333322 789999999999 999
Q ss_pred HhhcCCCCCccEEEec-CCCCHHHHHHHHHHhCCCC
Q 023515 242 QAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAF 276 (281)
Q Consensus 242 ~~~~~~~~~g~~~~~~-~~~t~~e~~~~i~~~~~~~ 276 (281)
.+++++. +++|++++ ..+++.|+++.+.+.+|..
T Consensus 231 ~~~~~~~-g~~~~v~~~~~~s~~e~~~~i~~~~g~~ 265 (330)
T 2pzm_A 231 SLQEGRP-TGVFNVSTGEGHSIKEVFDVVLDYVGAT 265 (330)
T ss_dssp HTSTTCC-CEEEEESCSCCEEHHHHHHHHHHHHTCC
T ss_pred HHhhcCC-CCEEEeCCCCCCCHHHHHHHHHHHhCCC
Confidence 9998765 66899875 6899999999999988754
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-36 Score=269.53 Aligned_cols=257 Identities=19% Similarity=0.160 Sum_probs=192.1
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHC---CCEEEEEEcCCCCcchhhhhhhccC-------------CCCcEEEEEcCCC
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSR---GYTVKASVRDPNDPKKTRHLLALDG-------------ASERLQLFKANLL 70 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~---g~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~~~D~~ 70 (281)
.++|+|||||||||||++|+++|+++ |++|++++|+......+.++..... ...+++++.+|++
T Consensus 71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 150 (478)
T 4dqv_A 71 PELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGDKS 150 (478)
T ss_dssp SCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECCTT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeECC
Confidence 46899999999999999999999999 8999999998765433332221111 1257999999998
Q ss_pred ------CcCcHHHHhcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCC
Q 023515 71 ------EEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRT 144 (281)
Q Consensus 71 ------~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~ 144 (281)
+.+.+..+++++|+|||+||.... .+++..+++|+.++.+++++|.+. ++++|||+||.+++.. .
T Consensus 151 ~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~---~~~~~~~~~Nv~gt~~ll~aa~~~-~~~~~V~iSS~~v~~~-----~ 221 (478)
T 4dqv_A 151 EPDLGLDQPMWRRLAETVDLIVDSAAMVNA---FPYHELFGPNVAGTAELIRIALTT-KLKPFTYVSTADVGAA-----I 221 (478)
T ss_dssp SGGGGCCHHHHHHHHHHCCEEEECCSSCSB---SSCCEEHHHHHHHHHHHHHHHTSS-SCCCEEEEEEGGGGTT-----S
T ss_pred CcccCCCHHHHHHHHcCCCEEEECccccCC---cCHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEEeehhhcCc-----c
Confidence 445788888899999999998654 455688999999999999999997 8889999999876542 1
Q ss_pred CCeeeecCCCCChhhhc-----cCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCC-CCC---CccHHHHHH
Q 023515 145 PDVVVDETWFSDPEVCK-----QSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQ-PTL---NTSAAAVLS 215 (281)
Q Consensus 145 ~~~~~~e~~~~~~~~~~-----~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~-~~~---~~~~~~~~~ 215 (281)
....++|+++..|..+. ...+.|+.+|+++|.++++++++.|++++++||++|||+... ... .....++..
T Consensus 222 ~~~~~~E~~~~~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ivRpg~v~G~~~~~g~~~~~~~~~~l~~~ 301 (478)
T 4dqv_A 222 EPSAFTEDADIRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQLNMSDWVTRMVLS 301 (478)
T ss_dssp CTTTCCSSSCHHHHCCEEECCTTSEECHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECCSSSSSCCCTTBHHHHHHHH
T ss_pred CCCCcCCcccccccCcccccccccccchHHHHHHHHHHHHHHHHHhCCCeEEEECceeeCCCccCCcCCHHHHHHHHHHH
Confidence 23456666654433110 112459999999999999998878999999999999998542 111 122233333
Q ss_pred HH-hCC-CCC----------CCCCccceeHHHHHHHHHHhhcC----CC-CCccEEEec-CC--CCHHHHHHHHHHh
Q 023515 216 LI-KGA-QTY----------PNVTFGWVNVKDVANAHIQAFEV----PS-ANGRYCLVE-RV--SHYSEIVNIIREL 272 (281)
Q Consensus 216 ~~-~~~-~~~----------~~~~~~~i~~~D~a~~i~~~~~~----~~-~~g~~~~~~-~~--~t~~e~~~~i~~~ 272 (281)
.. .|. +.. +++.++|+|++|+|++++.++.+ +. .+++||+++ +. +++.|+++.+.+.
T Consensus 302 ~~~~g~~P~~~~~~~~~G~~~~~~~~~v~vdDvA~ai~~~~~~~~~~~~~~~~~ynv~~~~~~~~s~~el~~~l~~~ 378 (478)
T 4dqv_A 302 LMATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAGSSLAGFATYHVMNPHDDGIGLDEYVDWLIEA 378 (478)
T ss_dssp HHHHCEEESCSBCCCTTSCCCCCCCCEEEHHHHHHHHHHHHHTTC-CCCCSEEEEEESCCCCSSCSHHHHHHHHHHT
T ss_pred HHHcCcccccccccccccccccceeeeeeHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCCCcCHHHHHHHHHHc
Confidence 32 232 211 15678999999999999999875 33 345899975 55 9999999999996
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-36 Score=266.90 Aligned_cols=260 Identities=13% Similarity=0.118 Sum_probs=192.5
Q ss_pred hhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhh---cc-------CCCCcEEEEEcCCCCcC
Q 023515 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLA---LD-------GASERLQLFKANLLEEG 73 (281)
Q Consensus 4 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~---~~-------~~~~~~~~~~~D~~~~~ 73 (281)
|....+|+|||||||||||++++++|+++|++|++++|+......+..+.. .. ....++.++.+|++|++
T Consensus 64 ~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 143 (427)
T 4f6c_A 64 LSHRPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMD 143 (427)
T ss_dssp SCCCCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---C
T ss_pred CCCCCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcc
Confidence 334567899999999999999999999999999999999873322222110 00 01247999999999988
Q ss_pred cHHHHhcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCC
Q 023515 74 SFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (281)
Q Consensus 74 ~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~ 153 (281)
.+. ...++|+|||+||.... ...++..+++|+.++.+++++|.+ +.++|||+||.++ +..........+++|++
T Consensus 144 ~l~-~~~~~d~Vih~A~~~~~--~~~~~~~~~~Nv~g~~~l~~aa~~--~~~~~v~~SS~~~-G~~~~~~~~~~~~~E~~ 217 (427)
T 4f6c_A 144 DVV-LPENMDTIIHAGARTDH--FGDDDEFEKVNVQGTVDVIRLAQQ--HHARLIYVSTISV-GTYFDIDTEDVTFSEAD 217 (427)
T ss_dssp CCC-CSSCCSEEEECCCCC---------CHHHHHHHHHHHHHHHHHH--TTCEEEEEEEGGG-GSEECSSCSCCEECTTC
T ss_pred cCC-CcCCCCEEEECCcccCC--CCCHHHHHHHHHHHHHHHHHHHHh--cCCcEEEECchHh-CCCccCCCCCccccccc
Confidence 888 77799999999997643 245568999999999999999999 5689999999887 21111223456788887
Q ss_pred CCChhhhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCC------ccHHHHHHHHhCCCC---CC
Q 023515 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLN------TSAAAVLSLIKGAQT---YP 224 (281)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~------~~~~~~~~~~~~~~~---~~ 224 (281)
+..+. .+.+.|+.+|+++|.+++.+++ .|++++++||++||||....... .....+.....+.+. .+
T Consensus 218 ~~~~~---~~~~~Y~~sK~~~E~~~~~~~~-~g~~~~ivRpg~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (427)
T 4f6c_A 218 VYKGQ---LLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGVSMA 293 (427)
T ss_dssp SCSSC---CCCSHHHHHHHHHHHHHHHHHH-TTCCEEEEEECCEESCSSSCCCCTTGGGCHHHHHHHHHHHSSEEEHHHH
T ss_pred cccCC---CCCCchHHHHHHHHHHHHHHHH-cCCCEEEEeCCeeecCCCCCccccCcchHHHHHHHHHHHhcCCCCCccc
Confidence 74322 1346799999999999999854 69999999999999997654321 133445555554421 14
Q ss_pred CCCccceeHHHHHHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCC
Q 023515 225 NVTFGWVNVKDVANAHIQAFEVPSANGRYCLV-ERVSHYSEIVNIIRELYP 274 (281)
Q Consensus 225 ~~~~~~i~~~D~a~~i~~~~~~~~~~g~~~~~-~~~~t~~e~~~~i~~~~~ 274 (281)
++.++|++++|+|++++.++.++..+++||++ ++.+++.|+++.+.+ ++
T Consensus 294 ~~~~~~v~v~DvA~ai~~~~~~~~~g~~~~l~~~~~~s~~el~~~i~~-~g 343 (427)
T 4f6c_A 294 EMPVDFSFVDTTARQIVALAQVNTPQIIYHVLSPNKMPVKSLLECVKR-KE 343 (427)
T ss_dssp TCEECCEEHHHHHHHHHHHTTSCCCCSEEEESCSCCEEHHHHHHHHHS-SC
T ss_pred cceEEEeeHHHHHHHHHHHHcCCCCCCEEEecCCCCCcHHHHHHHHHH-cC
Confidence 78899999999999999999987755699987 578999999999998 44
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=257.30 Aligned_cols=241 Identities=19% Similarity=0.216 Sum_probs=181.4
Q ss_pred eEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcC-----CcE
Q 023515 11 VVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG-----CDG 84 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~-----~d~ 84 (281)
+|||||||||||++++++|+++| ++|++++|...... ...+. ++. +.+|+++.+.+..++++ +|+
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-~~~~~-------~~~-~~~d~~~~~~~~~~~~~~~~~~~d~ 71 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK-FVNLV-------DLN-IADYMDKEDFLIQIMAGEEFGDVEA 71 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGG-GHHHH-------TSC-CSEEEEHHHHHHHHHTTCCCSSCCE
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCch-hhhcC-------cce-eccccccHHHHHHHHhccccCCCcE
Confidence 48999999999999999999999 99999999765321 11111 122 67899998889988875 999
Q ss_pred eEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCC
Q 023515 85 VCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSE 164 (281)
Q Consensus 85 Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 164 (281)
|||+|+.... ....++..+++|+.++.+++++|++. ++ +|||+||.+++. . ....+++|+++..| .
T Consensus 72 vi~~a~~~~~-~~~~~~~~~~~n~~~~~~l~~a~~~~-~~-~~v~~SS~~v~g-~----~~~~~~~E~~~~~p------~ 137 (310)
T 1eq2_A 72 IFHEGACSST-TEWDGKYMMDNNYQYSKELLHYCLER-EI-PFLYASSAATYG-G----RTSDFIESREYEKP------L 137 (310)
T ss_dssp EEECCSCCCT-TCCCHHHHHHHTHHHHHHHHHHHHHH-TC-CEEEEEEGGGGT-T----CCSCBCSSGGGCCC------S
T ss_pred EEECcccccC-cccCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEeeHHHhC-C----CCCCCCCCCCCCCC------C
Confidence 9999997554 33455688999999999999999998 77 999999987654 2 12335677765543 3
Q ss_pred chhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCC---CCccHHHHHHHHhCCC--CC--CCC-CccceeHHHH
Q 023515 165 LWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPT---LNTSAAAVLSLIKGAQ--TY--PNV-TFGWVNVKDV 236 (281)
Q Consensus 165 ~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~---~~~~~~~~~~~~~~~~--~~--~~~-~~~~i~~~D~ 236 (281)
+.|+.+|.++|.+++.+++++|++++++||+.+|||...+. ......++..+..+.+ .+ +++ .++|+|++|+
T Consensus 138 ~~Y~~sK~~~e~~~~~~~~~~g~~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~Dv 217 (310)
T 1eq2_A 138 NVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDV 217 (310)
T ss_dssp SHHHHHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC-------------CBCEEEHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHcCCCEEEEeCCcEECcCCCCCCccchHHHHHHHHHHcCCCcEEecCCCcceEccEEHHHH
Confidence 67999999999999999888899999999999999975421 1223344555555552 23 456 8899999999
Q ss_pred HHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 237 ANAHIQAFEVPSANGRYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 237 a~~i~~~~~~~~~~g~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
|++++.+++++. +++||++ ++.+|+.|+++.+.+.+|.
T Consensus 218 a~~~~~~~~~~~-~~~~~i~~~~~~s~~e~~~~i~~~~g~ 256 (310)
T 1eq2_A 218 ADVNLWFLENGV-SGIFNLGTGRAESFQAVADATLAYHKK 256 (310)
T ss_dssp HHHHHHHHHHCC-CEEEEESCSCCBCHHHHHHHC------
T ss_pred HHHHHHHHhcCC-CCeEEEeCCCccCHHHHHHHHHHHcCC
Confidence 999999998776 6799997 5789999999999998875
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-37 Score=256.53 Aligned_cols=222 Identities=15% Similarity=0.067 Sum_probs=181.5
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--CCcEeEE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVCH 87 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~Vih 87 (281)
|+|||||||||||++++++|+++|++|++++|. ++|++|.+.+.++++ ++|+|||
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~-----------------------~~D~~d~~~~~~~~~~~~~d~vi~ 62 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEEYDIYPFDKK-----------------------LLDITNISQVQQVVQEIRPHIIIH 62 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTTEEEEEECTT-----------------------TSCTTCHHHHHHHHHHHCCSEEEE
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCEEEEeccc-----------------------ccCCCCHHHHHHHHHhcCCCEEEE
Confidence 389999999999999999999999999999982 268999999999998 6999999
Q ss_pred ecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCch
Q 023515 88 TASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (281)
Q Consensus 88 ~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 166 (281)
+|+..... ....++..+++|+.++.+++++|++. +. +|||+||.++|.+ ....+++|+++..|. +.
T Consensus 63 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~v~~SS~~vy~~-----~~~~~~~E~~~~~p~------~~ 129 (287)
T 3sc6_A 63 CAAYTKVDQAEKERDLAYVINAIGARNVAVASQLV-GA-KLVYISTDYVFQG-----DRPEGYDEFHNPAPI------NI 129 (287)
T ss_dssp CCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHH-TC-EEEEEEEGGGSCC-----CCSSCBCTTSCCCCC------SH
T ss_pred CCcccChHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEchhhhcCC-----CCCCCCCCCCCCCCC------CH
Confidence 99975422 12455689999999999999999997 66 7999999877642 234567888876653 67
Q ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC--CCCCCCCccceeHHHHHHHHHHhh
Q 023515 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA--QTYPNVTFGWVNVKDVANAHIQAF 244 (281)
Q Consensus 167 Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~D~a~~i~~~~ 244 (281)
|+.+|.++|.+++.+ +.+++++||+.+|||... ......+.....+. +..+++.++|+|++|+|++++.++
T Consensus 130 Y~~sK~~~E~~~~~~----~~~~~ilR~~~v~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~ 202 (287)
T 3sc6_A 130 YGASKYAGEQFVKEL----HNKYFIVRTSWLYGKYGN---NFVKTMIRLGKEREEISVVADQIGSPTYVADLNVMINKLI 202 (287)
T ss_dssp HHHHHHHHHHHHHHH----CSSEEEEEECSEECSSSC---CHHHHHHHHHTTCSEEEEECSCEECCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh----CCCcEEEeeeeecCCCCC---cHHHHHHHHHHcCCCeEeecCcccCceEHHHHHHHHHHHH
Confidence 999999999999776 347899999999998743 22333444444444 334678899999999999999999
Q ss_pred cCCCCCccEEEec-CCCCHHHHHHHHHHhCCC
Q 023515 245 EVPSANGRYCLVE-RVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 245 ~~~~~~g~~~~~~-~~~t~~e~~~~i~~~~~~ 275 (281)
+++. +|+||+++ +.+|+.|+++.+.+.+|.
T Consensus 203 ~~~~-~~~~~i~~~~~~s~~e~~~~i~~~~g~ 233 (287)
T 3sc6_A 203 HTSL-YGTYHVSNTGSCSWFEFAKKIFSYANM 233 (287)
T ss_dssp TSCC-CEEEECCCBSCEEHHHHHHHHHHHHTC
T ss_pred hCCC-CCeEEEcCCCcccHHHHHHHHHHHcCC
Confidence 9877 77999875 779999999999999874
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=253.67 Aligned_cols=243 Identities=21% Similarity=0.242 Sum_probs=185.3
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcc-hhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcC--C
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPK-KTRHLLALDGASERLQLFKANLLEEGSFDSIVDG--C 82 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~ 82 (281)
.++||+|||||||||||++++++|+++|++|++++|+..... .+.. ..+++++++|++|++++.+++++ +
T Consensus 18 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~-------~~~~~~~~~Dl~d~~~~~~~~~~~~~ 90 (333)
T 2q1w_A 18 GSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKD-------HPNLTFVEGSIADHALVNQLIGDLQP 90 (333)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCC-------CTTEEEEECCTTCHHHHHHHHHHHCC
T ss_pred cCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHhh-------cCCceEEEEeCCCHHHHHHHHhccCC
Confidence 456899999999999999999999999999999999764321 1111 03689999999999999999987 9
Q ss_pred cEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhcc
Q 023515 83 DGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQ 162 (281)
Q Consensus 83 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 162 (281)
|+|||+||.........+ . +++|+.++.+++++|.+. ++++|||+||.+++...+ ..... +++|++ .
T Consensus 91 D~vih~A~~~~~~~~~~~-~-~~~N~~~~~~l~~a~~~~-~~~~iV~~SS~~~~g~~~-~~~~~-~~~E~~--~------ 157 (333)
T 2q1w_A 91 DAVVHTAASYKDPDDWYN-D-TLTNCVGGSNVVQAAKKN-NVGRFVYFQTALCYGVKP-IQQPV-RLDHPR--N------ 157 (333)
T ss_dssp SEEEECCCCCSCTTCHHH-H-HHHHTHHHHHHHHHHHHT-TCSEEEEEEEGGGGCSCC-CSSSB-CTTSCC--C------
T ss_pred cEEEECceecCCCccCCh-H-HHHHHHHHHHHHHHHHHh-CCCEEEEECcHHHhCCCc-ccCCC-CcCCCC--C------
Confidence 999999997543212233 3 899999999999999997 788999999987653110 01112 566665 1
Q ss_pred CC-chhhhhHHHHHHHHHH-HHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCC-CCCCccceeHHHHHHH
Q 023515 163 SE-LWYPLSKTLAEDAAWK-FAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY-PNVTFGWVNVKDVANA 239 (281)
Q Consensus 163 ~~-~~Y~~sK~~~e~~~~~-~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~D~a~~ 239 (281)
+. +.|+.+|.++|.+++. ++ +++++||+++|||... ......++.....+.+.+ +.+.++|+|++|+|++
T Consensus 158 p~~~~Y~~sK~~~E~~~~~s~~-----~~~ilR~~~v~gp~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a 230 (333)
T 2q1w_A 158 PANSSYAISKSANEDYLEYSGL-----DFVTFRLANVVGPRNV--SGPLPIFFQRLSEGKKCFVTKARRDFVFVKDLARA 230 (333)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTC-----CEEEEEESEEESTTCC--SSHHHHHHHHHHTTCCCEEEECEECEEEHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHhhhC-----CeEEEeeceEECcCCc--CcHHHHHHHHHHcCCeeeCCCceEeeEEHHHHHHH
Confidence 22 5699999999999977 53 8999999999999821 122334455555554222 4667899999999999
Q ss_pred HHHhhcCCCCCccEEEec-CCCCHHHHHHHHHHhCCCC
Q 023515 240 HIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAF 276 (281)
Q Consensus 240 i~~~~~~~~~~g~~~~~~-~~~t~~e~~~~i~~~~~~~ 276 (281)
++.+++++. +++|++++ ..+++.|+++.+.+.+|..
T Consensus 231 i~~~~~~~~-g~~~~v~~~~~~s~~e~~~~i~~~~g~~ 267 (333)
T 2q1w_A 231 TVRAVDGVG-HGAYHFSSGTDVAIKELYDAVVEAMALP 267 (333)
T ss_dssp HHHHHTTCC-CEEEECSCSCCEEHHHHHHHHHHHTTCS
T ss_pred HHHHHhcCC-CCEEEeCCCCCccHHHHHHHHHHHhCCC
Confidence 999998776 66899874 7899999999999999754
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-36 Score=255.87 Aligned_cols=234 Identities=16% Similarity=0.098 Sum_probs=160.6
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcC--CcEeE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG--CDGVC 86 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~d~Vi 86 (281)
+|+|||||||||||++++++|+++|++|++++|+... .+ ++++|++|++++.+++++ +|+||
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~--------------~~--~~~~Dl~d~~~~~~~~~~~~~d~vi 65 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRAR--------------PK--FEQVNLLDSNAVHHIIHDFQPHVIV 65 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC----------------------------------CHHHHHHHCCSEEE
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCC--------------CC--eEEecCCCHHHHHHHHHhhCCCEEE
Confidence 5789999999999999999999999999999986532 12 678999999999998884 89999
Q ss_pred EecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCc
Q 023515 87 HTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL 165 (281)
Q Consensus 87 h~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 165 (281)
|+||..... ....++..+++|+.++.+++++|.+. +. +|||+||..++.+ ...+++|+++..| .+
T Consensus 66 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~-~~v~~SS~~v~~~------~~~~~~E~~~~~~------~~ 131 (315)
T 2ydy_A 66 HCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAV-GA-FLIYISSDYVFDG------TNPPYREEDIPAP------LN 131 (315)
T ss_dssp ECC-------------------CHHHHHHHHHHHHH-TC-EEEEEEEGGGSCS------SSCSBCTTSCCCC------CS
T ss_pred ECCcccChhhhhcCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEchHHHcCC------CCCCCCCCCCCCC------cC
Confidence 999974322 23455688999999999999999997 65 8999999887652 2345778776554 36
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHH-hCCC--CCCCCCccceeHHHHHHHHHH
Q 023515 166 WYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLI-KGAQ--TYPNVTFGWVNVKDVANAHIQ 242 (281)
Q Consensus 166 ~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~i~~~D~a~~i~~ 242 (281)
.|+.+|.++|.+++.+ +.+++++||+.+|||...+........+.... .+.+ ..+.+.++|+|++|+|++++.
T Consensus 132 ~Y~~sK~~~e~~~~~~----~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~ 207 (315)
T 2ydy_A 132 LYGKTKLDGEKAVLEN----NLGAAVLRIPILYGEVEKLEESAVTVMFDKVQFSNKSANMDHWQQRFPTHVKDVATVCRQ 207 (315)
T ss_dssp HHHHHHHHHHHHHHHH----CTTCEEEEECSEECSCSSGGGSTTGGGHHHHHCCSSCEEEECSSBBCCEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh----CCCeEEEeeeeeeCCCCcccccHHHHHHHHHHhcCCCeeeccCceECcEEHHHHHHHHHH
Confidence 7999999999999775 57889999999999876521122223334444 4442 235778899999999999999
Q ss_pred hhcCC----CCCccEEEec-CCCCHHHHHHHHHHhCCCC
Q 023515 243 AFEVP----SANGRYCLVE-RVSHYSEIVNIIRELYPAF 276 (281)
Q Consensus 243 ~~~~~----~~~g~~~~~~-~~~t~~e~~~~i~~~~~~~ 276 (281)
+++++ ..+++||+++ +.+++.|+++.+.+.+|..
T Consensus 208 ~~~~~~~~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~ 246 (315)
T 2ydy_A 208 LAEKRMLDPSIKGTFHWSGNEQMTKYEMACAIADAFNLP 246 (315)
T ss_dssp HHHHHHTCTTCCEEEECCCSCCBCHHHHHHHHHHHTTCC
T ss_pred HHHhhccccCCCCeEEEcCCCcccHHHHHHHHHHHhCCC
Confidence 98753 3456899874 7899999999999998753
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-36 Score=259.09 Aligned_cols=234 Identities=15% Similarity=0.177 Sum_probs=186.3
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHC-CC-EEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSR-GY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~-g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~ 84 (281)
+++|+||||||||+||++++++|+++ |+ +|++++|++.+...+..... ..++.++.+|++|.+.+.++++++|+
T Consensus 19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~----~~~v~~~~~Dl~d~~~l~~~~~~~D~ 94 (344)
T 2gn4_A 19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFN----DPRMRFFIGDVRDLERLNYALEGVDI 94 (344)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHC----CTTEEEEECCTTCHHHHHHHTTTCSE
T ss_pred hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhc----CCCEEEEECCCCCHHHHHHHHhcCCE
Confidence 56799999999999999999999999 97 99999997654433322211 14789999999999999999999999
Q ss_pred eEEecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccC
Q 023515 85 VCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQS 163 (281)
Q Consensus 85 Vih~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 163 (281)
|||+||..... ....+.+.+++|+.|+.+++++|.+. ++++||++||..++. +
T Consensus 95 Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~-~v~~~V~~SS~~~~~-------------------------p 148 (344)
T 2gn4_A 95 CIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKN-AISQVIALSTDKAAN-------------------------P 148 (344)
T ss_dssp EEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHT-TCSEEEEECCGGGSS-------------------------C
T ss_pred EEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhC-CCCEEEEecCCccCC-------------------------C
Confidence 99999864311 11233588999999999999999998 889999999976542 1
Q ss_pred CchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC-C---CCCCCCccceeHHHH
Q 023515 164 ELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA-Q---TYPNVTFGWVNVKDV 236 (281)
Q Consensus 164 ~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~i~~~D~ 236 (281)
.+.|+.+|.++|.+++.++++ .|++++++|||++|||... ....+...+..+. + ..+...++|+|++|+
T Consensus 149 ~~~Y~~sK~~~E~~~~~~~~~~~~~g~~~~~vRpg~v~g~~~~----~i~~~~~~~~~g~~~~~i~~~~~~r~~i~v~D~ 224 (344)
T 2gn4_A 149 INLYGATKLCSDKLFVSANNFKGSSQTQFSVVRYGNVVGSRGS----VVPFFKKLVQNKASEIPITDIRMTRFWITLDEG 224 (344)
T ss_dssp CSHHHHHHHHHHHHHHHGGGCCCSSCCEEEEECCCEETTCTTS----HHHHHHHHHHHTCCCEEESCTTCEEEEECHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEEeccEECCCCC----HHHHHHHHHHcCCCceEEeCCCeEEeeEEHHHH
Confidence 245999999999999988764 5899999999999998732 2334444455555 2 125677889999999
Q ss_pred HHHHHHhhcCCCCCccEEEecCCCCHHHHHHHHHHhCC
Q 023515 237 ANAHIQAFEVPSANGRYCLVERVSHYSEIVNIIRELYP 274 (281)
Q Consensus 237 a~~i~~~~~~~~~~g~~~~~~~~~t~~e~~~~i~~~~~ 274 (281)
|++++.+++++..+.+|++.+..+++.|+++.+.+.++
T Consensus 225 a~~v~~~l~~~~~g~~~~~~~~~~s~~el~~~i~~~~~ 262 (344)
T 2gn4_A 225 VSFVLKSLKRMHGGEIFVPKIPSMKMTDLAKALAPNTP 262 (344)
T ss_dssp HHHHHHHHHHCCSSCEEEECCCEEEHHHHHHHHCTTCC
T ss_pred HHHHHHHHhhccCCCEEecCCCcEEHHHHHHHHHHhCC
Confidence 99999999876554589888778999999999987653
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=259.60 Aligned_cols=253 Identities=18% Similarity=0.164 Sum_probs=193.2
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCc--chhhhhhhcc-CCCC-cEEEEEcCCCCcCcHHHHhcC--C
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP--KKTRHLLALD-GASE-RLQLFKANLLEEGSFDSIVDG--C 82 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~~~~~~~-~~~~-~~~~~~~D~~~~~~~~~~~~~--~ 82 (281)
+|+|||||||||||++++++|+++|++|++++|+..+. ..+..+.... .... ++.++.+|++|.+++.+++++ +
T Consensus 28 ~k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 107 (381)
T 1n7h_A 28 RKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKP 107 (381)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCC
T ss_pred CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhcCC
Confidence 37899999999999999999999999999999986542 1121111100 0012 688999999999999998885 6
Q ss_pred cEeEEecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCcc-----EEEEeccceeeecCCCCCCCCeeeecCCCCC
Q 023515 83 DGVCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIK-----RVVLTSSMAAVLNTGKPRTPDVVVDETWFSD 156 (281)
Q Consensus 83 d~Vih~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-----~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~ 156 (281)
|+|||+||..... ..+.++..+++|+.++.+++++|.+. +++ +|||+||.++|... .. +++|+++..
T Consensus 108 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~-~~~~~~~~~~v~~SS~~vyg~~-----~~-~~~E~~~~~ 180 (381)
T 1n7h_A 108 DEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSH-TIDSGRTVKYYQAGSSEMFGST-----PP-PQSETTPFH 180 (381)
T ss_dssp SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHH-HHHHCCCCEEEEEEEGGGGTTS-----CS-SBCTTSCCC
T ss_pred CEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHh-CCccCCccEEEEeCcHHHhCCC-----CC-CCCCCCCCC
Confidence 9999999964321 11234578899999999999999987 554 99999998776421 12 677877655
Q ss_pred hhhhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCC--ccHHHHHHHHhCCC-C----CCCCCcc
Q 023515 157 PEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLN--TSAAAVLSLIKGAQ-T----YPNVTFG 229 (281)
Q Consensus 157 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~--~~~~~~~~~~~~~~-~----~~~~~~~ 229 (281)
| .+.|+.+|.++|.+++.++.+++++++++|++++|||+...... .....+..+..+.+ . .+++.++
T Consensus 181 ~------~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~ 254 (381)
T 1n7h_A 181 P------RSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRD 254 (381)
T ss_dssp C------CSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEESCTTCEEE
T ss_pred C------CCchHHHHHHHHHHHHHHHHHhCCcEEEEEeCceeCCCCCCcchhHHHHHHHHHHHcCCCCeEEeCCCCceee
Confidence 4 36799999999999999988889999999999999998543221 11233444555542 1 2467889
Q ss_pred ceeHHHHHHHHHHhhcCCCCCccEEEec-CCCCHHHHHHHHHHhCCC
Q 023515 230 WVNVKDVANAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 230 ~i~~~D~a~~i~~~~~~~~~~g~~~~~~-~~~t~~e~~~~i~~~~~~ 275 (281)
|+|++|+|++++.+++++. .++||+++ +.+|+.|+++.+.+.+|.
T Consensus 255 ~v~v~Dva~a~~~~~~~~~-~~~~~i~~~~~~s~~e~~~~i~~~~g~ 300 (381)
T 1n7h_A 255 WGFAGDYVEAMWLMLQQEK-PDDYVVATEEGHTVEEFLDVSFGYLGL 300 (381)
T ss_dssp CEEHHHHHHHHHHHHTSSS-CCEEEECCSCEEEHHHHHHHHHHHTTC
T ss_pred eEEHHHHHHHHHHHHhCCC-CCeEEeeCCCCCcHHHHHHHHHHHcCC
Confidence 9999999999999998765 47899874 689999999999999875
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=247.03 Aligned_cols=213 Identities=17% Similarity=0.217 Sum_probs=176.0
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 87 (281)
+||+||||||||+||++++++|+++|++|++++|++.+.. ..+++++++|++|.+++.++++++|+|||
T Consensus 2 ~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~-----------~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~ 70 (267)
T 3rft_A 2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPA-----------GPNEECVQCDLADANAVNAMVAGCDGIVH 70 (267)
T ss_dssp CEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCC-----------CTTEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcccc-----------CCCCEEEEcCCCCHHHHHHHHcCCCEEEE
Confidence 3678999999999999999999999999999999876543 14789999999999999999999999999
Q ss_pred ecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchh
Q 023515 88 TASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWY 167 (281)
Q Consensus 88 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y 167 (281)
|||.. ..++++..+++|+.|+.+++++|++. +.++|||+||..++... ....+++|+.+..| .+.|
T Consensus 71 ~Ag~~---~~~~~~~~~~~N~~g~~~l~~a~~~~-~~~~iv~~SS~~~~g~~----~~~~~~~e~~~~~~------~~~Y 136 (267)
T 3rft_A 71 LGGIS---VEKPFEQILQGNIIGLYNLYEAARAH-GQPRIVFASSNHTIGYY----PQTERLGPDVPARP------DGLY 136 (267)
T ss_dssp CCSCC---SCCCHHHHHHHHTHHHHHHHHHHHHT-TCCEEEEEEEGGGGTTS----BTTSCBCTTSCCCC------CSHH
T ss_pred CCCCc---CcCCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEcchHHhCCC----CCCCCCCCCCCCCC------CChH
Confidence 99974 34567799999999999999999998 78899999998877422 22346677776554 3669
Q ss_pred hhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCC
Q 023515 168 PLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP 247 (281)
Q Consensus 168 ~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~ 247 (281)
+.||.++|.+++.+++++|++++++||+.++|+... +...++|++++|+++++..+++.+
T Consensus 137 ~~sK~~~e~~~~~~a~~~g~~~~~vr~~~v~~~~~~--------------------~~~~~~~~~~~d~a~~~~~~~~~~ 196 (267)
T 3rft_A 137 GVSKCFGENLARMYFDKFGQETALVRIGSCTPEPNN--------------------YRMLSTWFSHDDFVSLIEAVFRAP 196 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEECBCSSSCCS--------------------TTHHHHBCCHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEEEeecccCCCCC--------------------CCceeeEEcHHHHHHHHHHHHhCC
Confidence 999999999999999889999999999999987422 123456899999999999999987
Q ss_pred CCCc-cEEE-ecCCCCHHHH
Q 023515 248 SANG-RYCL-VERVSHYSEI 265 (281)
Q Consensus 248 ~~~g-~~~~-~~~~~t~~e~ 265 (281)
...+ ++++ +++..++.++
T Consensus 197 ~~~~~~~~~~s~~~~~~~~~ 216 (267)
T 3rft_A 197 VLGCPVVWGASANDAGWWDN 216 (267)
T ss_dssp CCCSCEEEECCCCTTCCBCC
T ss_pred CCCceEEEEeCCCCCCcccC
Confidence 6644 4554 4566565554
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-35 Score=247.39 Aligned_cols=220 Identities=20% Similarity=0.187 Sum_probs=174.7
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEe
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~ 88 (281)
||+|||||| ||||++++++|+++|++|++++|++.+...+.. .+++++++|++|.+ ++++|+|||+
T Consensus 5 ~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~--------~~~~~~~~D~~d~~-----~~~~d~vi~~ 70 (286)
T 3ius_A 5 TGTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA--------SGAEPLLWPGEEPS-----LDGVTHLLIS 70 (286)
T ss_dssp CCEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH--------TTEEEEESSSSCCC-----CTTCCEEEEC
T ss_pred cCcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh--------CCCeEEEecccccc-----cCCCCEEEEC
Confidence 679999998 999999999999999999999998765433222 36899999999854 6799999999
Q ss_pred cccCCCCCCCccchhhhhHHHHHHHHHHHhhhC-CCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchh
Q 023515 89 ASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKF-PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWY 167 (281)
Q Consensus 89 a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y 167 (281)
|+..... . ..+.+++++|++. .++++|||+||.++|. . ....+++|+++..|. +.|
T Consensus 71 a~~~~~~--~----------~~~~~l~~a~~~~~~~~~~~v~~Ss~~vyg-~----~~~~~~~E~~~~~p~------~~Y 127 (286)
T 3ius_A 71 TAPDSGG--D----------PVLAALGDQIAARAAQFRWVGYLSTTAVYG-D----HDGAWVDETTPLTPT------AAR 127 (286)
T ss_dssp CCCBTTB--C----------HHHHHHHHHHHHTGGGCSEEEEEEEGGGGC-C----CTTCEECTTSCCCCC------SHH
T ss_pred CCccccc--c----------HHHHHHHHHHHhhcCCceEEEEeecceecC-C----CCCCCcCCCCCCCCC------CHH
Confidence 9864421 1 2357889999883 2778999999987664 2 234578888877654 679
Q ss_pred hhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCC---CCCCCccceeHHHHHHHHHHhh
Q 023515 168 PLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT---YPNVTFGWVNVKDVANAHIQAF 244 (281)
Q Consensus 168 ~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~D~a~~i~~~~ 244 (281)
+.+|.++|++++.+ .+++++++||+.+|||..... .++..+.+. .+.+.++|+|++|+|++++.++
T Consensus 128 ~~sK~~~E~~~~~~---~~~~~~ilRp~~v~G~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~ 196 (286)
T 3ius_A 128 GRWRVMAEQQWQAV---PNLPLHVFRLAGIYGPGRGPF--------SKLGKGGIRRIIKPGQVFSRIHVEDIAQVLAASM 196 (286)
T ss_dssp HHHHHHHHHHHHHS---TTCCEEEEEECEEEBTTBSSS--------TTSSSSCCCEEECTTCCBCEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh---cCCCEEEEeccceECCCchHH--------HHHhcCCccccCCCCcccceEEHHHHHHHHHHHH
Confidence 99999999999776 589999999999999975431 122233321 1357889999999999999999
Q ss_pred cCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCC
Q 023515 245 EVPSANGRYCLV-ERVSHYSEIVNIIRELYPAF 276 (281)
Q Consensus 245 ~~~~~~g~~~~~-~~~~t~~e~~~~i~~~~~~~ 276 (281)
+++..+++||++ ++.+|+.|+++.+.+.+|..
T Consensus 197 ~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~ 229 (286)
T 3ius_A 197 ARPDPGAVYNVCDDEPVPPQDVIAYAAELQGLP 229 (286)
T ss_dssp HSCCTTCEEEECCSCCBCHHHHHHHHHHHHTCC
T ss_pred hCCCCCCEEEEeCCCCccHHHHHHHHHHHcCCC
Confidence 988766699997 57899999999999998753
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=253.43 Aligned_cols=253 Identities=20% Similarity=0.213 Sum_probs=186.5
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCc-chhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--CCcEeE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP-KKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVC 86 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~Vi 86 (281)
|+|||||||||||++++++|+++|++|++++|..... ..+..+.... ..++.++.+|++|++++.++++ ++|+||
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~D~vi 78 (338)
T 1udb_A 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLG--GKHPTFVEGDIRNEALMTEILHDHAIDTVI 78 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHH--TSCCEEEECCTTCHHHHHHHHHHTTCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCCcchhHHHHHHhhc--CCcceEEEccCCCHHHHHHHhhccCCCEEE
Confidence 4799999999999999999999999999998754322 2222111111 1357889999999999988887 599999
Q ss_pred EecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCc
Q 023515 87 HTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL 165 (281)
Q Consensus 87 h~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 165 (281)
|+||..... ..+.+...+++|+.++.+++++|++. ++++|||+||.+++. .. ...+++|+++..| ..+
T Consensus 79 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv~~SS~~~~g-~~----~~~~~~e~~~~~~-----~~~ 147 (338)
T 1udb_A 79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSSSATVYG-DN----PKIPYVESFPTGT-----PQS 147 (338)
T ss_dssp ECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEGGGGC-SC----CSSSBCTTSCCCC-----CSS
T ss_pred ECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhc-CCCeEEEEccHHHhC-CC----CCCCcCcccCCCC-----CCC
Confidence 999864311 11223478899999999999999987 788999999987654 21 2345677765432 135
Q ss_pred hhhhhHHHHHHHHHHHHHhc-CCcEEEEcCCcccCCCCC------CC--CCccHHHHHHHHhCC-C-----------CCC
Q 023515 166 WYPLSKTLAEDAAWKFAKEK-SIDLVTINPAMVIGPLLQ------PT--LNTSAAAVLSLIKGA-Q-----------TYP 224 (281)
Q Consensus 166 ~Y~~sK~~~e~~~~~~~~~~-g~~~~~irp~~v~g~~~~------~~--~~~~~~~~~~~~~~~-~-----------~~~ 224 (281)
.|+.+|.++|.+++.+++++ +++++++||+++|||... +. .......+.+...+. + ..|
T Consensus 148 ~Y~~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g 227 (338)
T 1udb_A 148 PYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDG 227 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSS
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCceEEEeeceecCCCcccccccccccchhhHHHHHHHHHHhcCCCcEEecCcccCCCC
Confidence 69999999999999998876 899999999999998431 11 111223333333321 1 124
Q ss_pred CCCccceeHHHHHHHHHHhhcCC--CCC-ccEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 225 NVTFGWVNVKDVANAHIQAFEVP--SAN-GRYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 225 ~~~~~~i~~~D~a~~i~~~~~~~--~~~-g~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
.+.++|+|++|+|++++.++++. ..+ ++||++ ++.+|+.|+++.+.+.+|.
T Consensus 228 ~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~ 282 (338)
T 1udb_A 228 TGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGK 282 (338)
T ss_dssp SCEECEEEHHHHHHHHHHHHHHHTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTS
T ss_pred ceeeeeEEHHHHHHHHHHHHhhhhccCCCcEEEecCCCceeHHHHHHHHHHHhCC
Confidence 57789999999999999998753 233 489987 5789999999999998764
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=241.59 Aligned_cols=218 Identities=20% Similarity=0.212 Sum_probs=170.7
Q ss_pred hhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcE-EEEEcCCCCcCcHHHHhcCC
Q 023515 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERL-QLFKANLLEEGSFDSIVDGC 82 (281)
Q Consensus 4 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~ 82 (281)
+..+++|+||||||||+||++++++|+++|++|++++|++++...+.. .++ +++++|++ +.+.++++++
T Consensus 16 ~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~--------~~~~~~~~~Dl~--~~~~~~~~~~ 85 (236)
T 3e8x_A 16 NLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE--------RGASDIVVANLE--EDFSHAFASI 85 (236)
T ss_dssp -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH--------TTCSEEEECCTT--SCCGGGGTTC
T ss_pred ccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh--------CCCceEEEcccH--HHHHHHHcCC
Confidence 345679999999999999999999999999999999998765443322 257 89999999 7788899999
Q ss_pred cEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhcc
Q 023515 83 DGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQ 162 (281)
Q Consensus 83 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 162 (281)
|+|||+||.... ..++..+++|+.++.+++++|++. +.++||++||.++... +..+ .
T Consensus 86 D~vi~~ag~~~~---~~~~~~~~~n~~~~~~l~~a~~~~-~~~~iv~~SS~~~~~~------------~~~~-~------ 142 (236)
T 3e8x_A 86 DAVVFAAGSGPH---TGADKTILIDLWGAIKTIQEAEKR-GIKRFIMVSSVGTVDP------------DQGP-M------ 142 (236)
T ss_dssp SEEEECCCCCTT---SCHHHHHHTTTHHHHHHHHHHHHH-TCCEEEEECCTTCSCG------------GGSC-G------
T ss_pred CEEEECCCCCCC---CCccccchhhHHHHHHHHHHHHHc-CCCEEEEEecCCCCCC------------CCCh-h------
Confidence 999999997542 456789999999999999999998 7899999999654321 1111 1
Q ss_pred CCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHH
Q 023515 163 SELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQ 242 (281)
Q Consensus 163 ~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~ 242 (281)
+...|+.+|.++|.+++ +.|++++++||+.++|+........ ...+...+++++++|+|++++.
T Consensus 143 ~~~~Y~~sK~~~e~~~~----~~gi~~~~lrpg~v~~~~~~~~~~~------------~~~~~~~~~~i~~~Dva~~~~~ 206 (236)
T 3e8x_A 143 NMRHYLVAKRLADDELK----RSSLDYTIVRPGPLSNEESTGKVTV------------SPHFSEITRSITRHDVAKVIAE 206 (236)
T ss_dssp GGHHHHHHHHHHHHHHH----HSSSEEEEEEECSEECSCCCSEEEE------------ESSCSCCCCCEEHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHH----HCCCCEEEEeCCcccCCCCCCeEEe------------ccCCCcccCcEeHHHHHHHHHH
Confidence 23569999999999885 5799999999999999864321110 0123446889999999999999
Q ss_pred hhcCCCCCc-cEEEecCCCCHHHHHHHHH
Q 023515 243 AFEVPSANG-RYCLVERVSHYSEIVNIIR 270 (281)
Q Consensus 243 ~~~~~~~~g-~~~~~~~~~t~~e~~~~i~ 270 (281)
+++++...| .|++.++..++.|+++.+.
T Consensus 207 ~~~~~~~~g~~~~v~~~~~~~~e~~~~i~ 235 (236)
T 3e8x_A 207 LVDQQHTIGKTFEVLNGDTPIAKVVEQLG 235 (236)
T ss_dssp HTTCGGGTTEEEEEEECSEEHHHHHHTC-
T ss_pred HhcCccccCCeEEEeCCCcCHHHHHHHhc
Confidence 999875544 8898877899999998765
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=275.04 Aligned_cols=255 Identities=15% Similarity=0.242 Sum_probs=195.2
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHC-CCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCc-HHHHhcCCcE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSR-GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGS-FDSIVDGCDG 84 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-~~~~~~~~d~ 84 (281)
+++|+|||||||||||++++++|+++ |++|++++|+..+...+.. ..+++++.+|++|.++ +.++++++|+
T Consensus 313 ~~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~~~~~~~-------~~~v~~v~~Dl~d~~~~~~~~~~~~D~ 385 (660)
T 1z7e_A 313 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLN-------HPHFHFVEGDISIHSEWIEYHVKKCDV 385 (660)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCTTTGGGTT-------CTTEEEEECCTTTCHHHHHHHHHHCSE
T ss_pred ccCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCchhhhhhcc-------CCceEEEECCCCCcHHHHHHhhcCCCE
Confidence 46789999999999999999999998 8999999998765432111 2468999999999765 7778889999
Q ss_pred eEEecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhh-cc
Q 023515 85 VCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVC-KQ 162 (281)
Q Consensus 85 Vih~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~-~~ 162 (281)
|||+||..... ....++..+++|+.++.+++++|.+. + ++|||+||.++|... ...+++|+++..+..+ ..
T Consensus 386 Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~-~-~r~V~~SS~~vyg~~-----~~~~~~E~~~~~~~~p~~~ 458 (660)
T 1z7e_A 386 VLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKY-R-KRIIFPSTSEVYGMC-----SDKYFDEDHSNLIVGPVNK 458 (660)
T ss_dssp EEECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHT-T-CEEEEECCGGGGBTC-----CSSSBCTTTCCEEECCTTC
T ss_pred EEECceecCccccccCHHHHHHhhhHHHHHHHHHHHHh-C-CEEEEEecHHHcCCC-----CCcccCCCccccccCcccC
Confidence 99999864321 12334578899999999999999998 6 899999998776421 2335677765311100 11
Q ss_pred CCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCC-------CCCccHHHHHHHHhCCCC--C--CCCCccce
Q 023515 163 SELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQP-------TLNTSAAAVLSLIKGAQT--Y--PNVTFGWV 231 (281)
Q Consensus 163 ~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~-------~~~~~~~~~~~~~~~~~~--~--~~~~~~~i 231 (281)
+.+.|+.+|.++|.+++.+++++|++++++||+++|||...+ .......++..+..+.+. . +++.++|+
T Consensus 459 p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRpg~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 538 (660)
T 1z7e_A 459 PRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFT 538 (660)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEESTTSSCHHHHTTTCSCHHHHHHHHHHHTCCEEEEGGGCCEEECE
T ss_pred CCCCcHHHHHHHHHHHHHHHHHcCCCEEEECCCcccCCCccccccccccccchHHHHHHHHHcCCCcEEeCCCCeEEEEE
Confidence 335699999999999999988889999999999999998542 112234455566666642 2 46789999
Q ss_pred eHHHHHHHHHHhhcCCC---CCccEEEec-C-CCCHHHHHHHHHHhCCC
Q 023515 232 NVKDVANAHIQAFEVPS---ANGRYCLVE-R-VSHYSEIVNIIRELYPA 275 (281)
Q Consensus 232 ~~~D~a~~i~~~~~~~~---~~g~~~~~~-~-~~t~~e~~~~i~~~~~~ 275 (281)
|++|+|++++.+++++. .+++||+++ + .+|+.|+++.+.+.+|.
T Consensus 539 ~v~Dva~ai~~~l~~~~~~~~g~~~ni~~~~~~~s~~el~~~i~~~~g~ 587 (660)
T 1z7e_A 539 DIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEK 587 (660)
T ss_dssp EHHHHHHHHHHHHHCGGGTTTTEEEEECCGGGEEEHHHHHHHHHHHHHH
T ss_pred EHHHHHHHHHHHHhCccccCCCeEEEECCCCCCcCHHHHHHHHHHHhcC
Confidence 99999999999998764 344899875 3 79999999999988753
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-36 Score=252.16 Aligned_cols=225 Identities=14% Similarity=0.038 Sum_probs=180.5
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcC--CcEeEE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG--CDGVCH 87 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~d~Vih 87 (281)
|+|||||||||||++++++|+ +|++|++++|+.. ++.+|++|++++.+++++ +|+|||
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~-------------------~~~~D~~d~~~~~~~~~~~~~d~vih 60 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PVGNLIALDVHSK-------------------EFCGDFSNPKGVAETVRKLRPDVIVN 60 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCS-------------------SSCCCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CeEEEECCCCHHHHHHHHHhh-cCCeEEEeccccc-------------------cccccCCCHHHHHHHHHhcCCCEEEE
Confidence 479999999999999999999 8999999998751 236899999999999886 999999
Q ss_pred ecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCch
Q 023515 88 TASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (281)
Q Consensus 88 ~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 166 (281)
+|+..... ....++..+++|+.++.+++++|++. ++ +|||+||.++|.+. ...+++|+++..| .+.
T Consensus 61 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~-~~v~~SS~~vy~~~-----~~~~~~E~~~~~p------~~~ 127 (299)
T 1n2s_A 61 AAAHTAVDKAESEPELAQLLNATSVEAIAKAANET-GA-WVVHYSTDYVFPGT-----GDIPWQETDATSP------LNV 127 (299)
T ss_dssp CCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTT-TC-EEEEEEEGGGSCCC-----TTCCBCTTSCCCC------SSH
T ss_pred CcccCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHc-CC-cEEEEecccEEeCC-----CCCCCCCCCCCCC------ccH
Confidence 99874421 23445688999999999999999997 66 79999998776521 2346778876654 367
Q ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCC--CCCCCCccceeHHHHHHHHHHhh
Q 023515 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--TYPNVTFGWVNVKDVANAHIQAF 244 (281)
Q Consensus 167 Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~D~a~~i~~~~ 244 (281)
|+.+|.++|.+++.++ .+++++||+.+|||... ......+.....+.+ ..+++.++|+|++|+|++++.++
T Consensus 128 Y~~sK~~~E~~~~~~~----~~~~ilRp~~v~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~ 200 (299)
T 1n2s_A 128 YGKTKLAGEKALQDNC----PKHLIFRTSWVYAGKGN---NFAKTMLRLAKERQTLSVINDQYGAPTGAELLADCTAHAI 200 (299)
T ss_dssp HHHHHHHHHHHHHHHC----SSEEEEEECSEECSSSC---CHHHHHHHHHHHCSEEEEECSCEECCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC----CCeEEEeeeeecCCCcC---cHHHHHHHHHhcCCCEEeecCcccCCeeHHHHHHHHHHHH
Confidence 9999999999997763 48999999999999753 233344555555552 34678899999999999999999
Q ss_pred cCC--C--CCccEEEec-CCCCHHHHHHHHHHhCC
Q 023515 245 EVP--S--ANGRYCLVE-RVSHYSEIVNIIRELYP 274 (281)
Q Consensus 245 ~~~--~--~~g~~~~~~-~~~t~~e~~~~i~~~~~ 274 (281)
+++ . .++.||+++ +.+|+.|+++.+.+.+|
T Consensus 201 ~~~~~~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g 235 (299)
T 1n2s_A 201 RVALNKPEVAGLYHLVAGGTTTWHDYAALVFDEAR 235 (299)
T ss_dssp HHHHHCGGGCEEEECCCBSCEEHHHHHHHHHHHHH
T ss_pred HHhccccccCceEEEeCCCCCCHHHHHHHHHHHhC
Confidence 876 2 256999875 78999999999998875
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-35 Score=264.93 Aligned_cols=256 Identities=13% Similarity=0.134 Sum_probs=191.4
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhh----------ccCCCCcEEEEEcCCCCcCcHHH
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLA----------LDGASERLQLFKANLLEEGSFDS 77 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~----------~~~~~~~~~~~~~D~~~~~~~~~ 77 (281)
.+|+|||||||||||++|+++|+++|++|++++|+..+.....++.. ......+++++.+|+++++.+.
T Consensus 149 ~~~~VLVTGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~- 227 (508)
T 4f6l_B 149 PLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV- 227 (508)
T ss_dssp CCEEEEESCTTSHHHHHHHHHTBTTEEEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSCC-
T ss_pred CCCeEEEECCccchHHHHHHHHHhcCCEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccCC-
Confidence 46899999999999999999998889999999998864322222110 0011257999999999988888
Q ss_pred HhcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCCh
Q 023515 78 IVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDP 157 (281)
Q Consensus 78 ~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~ 157 (281)
+..++|+|||+||.... ..+++..+++|+.++.+++++|.+ +.++|||+||.++ +..........+++|+++..+
T Consensus 228 ~~~~~D~Vih~Aa~~~~--~~~~~~~~~~Nv~gt~~ll~~a~~--~~~~~v~iSS~~v-G~~~~~~~~~~~~~E~~~~~~ 302 (508)
T 4f6l_B 228 LPENMDTIIHAGARTDH--FGDDDEFEKVNVQGTVDVIRLAQQ--HHARLIYVSTISV-GTYFDIDTEDVTFSEADVYKG 302 (508)
T ss_dssp CSSCCSEEEECCCC----------CCHHHHHHHHHHHHHHHHT--TTCEEEEEEESCT-TSEECTTCSCCEECTTCSCSS
T ss_pred CccCCCEEEECCceecC--CCCHHHHhhhHHHHHHHHHHHHHh--CCCcEEEeCChhh-ccCCccCCcCccccccccccc
Confidence 77799999999997643 344568899999999999999998 4589999999877 211111234567888876432
Q ss_pred hhhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCC------ccHHHHHHHHhCC--CC-CCCCCc
Q 023515 158 EVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLN------TSAAAVLSLIKGA--QT-YPNVTF 228 (281)
Q Consensus 158 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~------~~~~~~~~~~~~~--~~-~~~~~~ 228 (281)
. .+.+.|+.+|+++|.+++.+.+ .|++++++||+.|||+....... .....+.....+. +. .+++.+
T Consensus 303 ~---~~~~~Y~~sK~~~E~~~~~~~~-~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~ 378 (508)
T 4f6l_B 303 Q---LLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGVSMAEMPV 378 (508)
T ss_dssp B---CCCSHHHHHHHHHHHHHHHHHH-TTCEEEEEEECCEESCSSSCCCCTTCTTCHHHHHHHHHTTCSEEETTGGGSEE
T ss_pred c---cCCCcHHHHHHHHHHHHHHHHH-cCCCEEEEecceeccCCCCCcccCCcchHHHHHHHHHHHHcCCCCCCccCceE
Confidence 2 1346799999999999999754 69999999999999997654311 1234444444443 22 247889
Q ss_pred cceeHHHHHHHHHHhhcCCCCCccEEEec-CCCCHHHHHHHHHHhC
Q 023515 229 GWVNVKDVANAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELY 273 (281)
Q Consensus 229 ~~i~~~D~a~~i~~~~~~~~~~g~~~~~~-~~~t~~e~~~~i~~~~ 273 (281)
+|+|++|+|++++.++.++..+++||+++ +.++|.|+++.+.+..
T Consensus 379 ~~v~v~DvA~ai~~~~~~~~~~~~~nl~~~~~~s~~el~~~i~~~~ 424 (508)
T 4f6l_B 379 DFSFVDTTARQIVALAQVNTPQIIYHVLSPNKMPVKSLLECVKRKE 424 (508)
T ss_dssp ECEEHHHHHHHHHHHTTBCCSCSEEEESCSCEEEHHHHHHHHHSSC
T ss_pred EEEcHHHHHHHHHHHHhCCCCCCEEEeCCCCCCCHHHHHHHHHHcC
Confidence 99999999999999999877666999874 7899999999998754
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=237.64 Aligned_cols=208 Identities=15% Similarity=0.160 Sum_probs=169.4
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCC-cCcHHHHhcCCcEeEEe
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE-EGSFDSIVDGCDGVCHT 88 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~d~Vih~ 88 (281)
|+||||||||+||++++++|+++|++|++++|++.+...+ .+++++++|++| ++++.++++++|+|||+
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~----------~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ 70 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY----------NNVKAVHFDVDWTPEEMAKQLHGMDAIINV 70 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC----------TTEEEEECCTTSCHHHHHTTTTTCSEEEEC
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc----------CCceEEEecccCCHHHHHHHHcCCCEEEEC
Confidence 4799999999999999999999999999999987543321 468999999999 99999999999999999
Q ss_pred cccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchhh
Q 023515 89 ASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYP 168 (281)
Q Consensus 89 a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~ 168 (281)
||.... ..+++|+.++.+++++|++. ++++||++||.+++.. .+..| .+ ..+.+.|+
T Consensus 71 ag~~~~-------~~~~~n~~~~~~l~~a~~~~-~~~~iv~~SS~~~~~~--------~~~~e-~~------~~~~~~Y~ 127 (219)
T 3dqp_A 71 SGSGGK-------SLLKVDLYGAVKLMQAAEKA-EVKRFILLSTIFSLQP--------EKWIG-AG------FDALKDYY 127 (219)
T ss_dssp CCCTTS-------SCCCCCCHHHHHHHHHHHHT-TCCEEEEECCTTTTCG--------GGCCS-HH------HHHTHHHH
T ss_pred CcCCCC-------CcEeEeHHHHHHHHHHHHHh-CCCEEEEECcccccCC--------Ccccc-cc------cccccHHH
Confidence 987542 47789999999999999998 8889999999766431 11222 11 11245699
Q ss_pred hhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC
Q 023515 169 LSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS 248 (281)
Q Consensus 169 ~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~ 248 (281)
.+|.++|.+++ +..+++++++||+.+||+....... .++..++|++++|+|++++.+++++.
T Consensus 128 ~sK~~~e~~~~---~~~~i~~~ilrp~~v~g~~~~~~~~---------------~~~~~~~~i~~~Dva~~i~~~l~~~~ 189 (219)
T 3dqp_A 128 IAKHFADLYLT---KETNLDYTIIQPGALTEEEATGLID---------------INDEVSASNTIGDVADTIKELVMTDH 189 (219)
T ss_dssp HHHHHHHHHHH---HSCCCEEEEEEECSEECSCCCSEEE---------------ESSSCCCCEEHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHH---hccCCcEEEEeCceEecCCCCCccc---------------cCCCcCCcccHHHHHHHHHHHHhCcc
Confidence 99999999986 4579999999999999986432211 13577899999999999999999876
Q ss_pred CCc-cEEEecCCCCHHHHHHH
Q 023515 249 ANG-RYCLVERVSHYSEIVNI 268 (281)
Q Consensus 249 ~~g-~~~~~~~~~t~~e~~~~ 268 (281)
..| +|+++++..+++|+.+.
T Consensus 190 ~~g~~~~i~~g~~~~~e~~~~ 210 (219)
T 3dqp_A 190 SIGKVISMHNGKTAIKEALES 210 (219)
T ss_dssp GTTEEEEEEECSEEHHHHHHT
T ss_pred ccCcEEEeCCCCccHHHHHHH
Confidence 644 89998777999988764
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-35 Score=246.47 Aligned_cols=222 Identities=12% Similarity=0.051 Sum_probs=179.0
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--CCcEeE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVC 86 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~Vi 86 (281)
.++|||||||||||++++++|+++|++|++++|+ .+|++|++++.++++ ++|+||
T Consensus 12 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~-----------------------~~Dl~d~~~~~~~~~~~~~d~vi 68 (292)
T 1vl0_A 12 HMKILITGANGQLGREIQKQLKGKNVEVIPTDVQ-----------------------DLDITNVLAVNKFFNEKKPNVVI 68 (292)
T ss_dssp CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTT-----------------------TCCTTCHHHHHHHHHHHCCSEEE
T ss_pred cceEEEECCCChHHHHHHHHHHhCCCeEEeccCc-----------------------cCCCCCHHHHHHHHHhcCCCEEE
Confidence 5789999999999999999999999999999885 268999999999988 799999
Q ss_pred EecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCc
Q 023515 87 HTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL 165 (281)
Q Consensus 87 h~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 165 (281)
|+||..... ....++..+++|+.++.+++++|++. +. +|||+||.++|.+. ...+++|+++..| .+
T Consensus 69 h~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~-~~-~iv~~SS~~v~~~~-----~~~~~~E~~~~~~------~~ 135 (292)
T 1vl0_A 69 NCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSV-GA-EIVQISTDYVFDGE-----AKEPITEFDEVNP------QS 135 (292)
T ss_dssp ECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHH-TC-EEEEEEEGGGSCSC-----CSSCBCTTSCCCC------CS
T ss_pred ECCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEechHHeECCC-----CCCCCCCCCCCCC------cc
Confidence 999864321 12345688999999999999999997 66 99999998776421 2346778876654 35
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCC--CCCCCCccceeHHHHHHHHHHh
Q 023515 166 WYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--TYPNVTFGWVNVKDVANAHIQA 243 (281)
Q Consensus 166 ~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~D~a~~i~~~ 243 (281)
.|+.+|.++|.+++.+ +.+++++||+.+||| .. ......+.....+.+ ..+++.++|+|++|+|++++.+
T Consensus 136 ~Y~~sK~~~E~~~~~~----~~~~~~lR~~~v~G~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~ 207 (292)
T 1vl0_A 136 AYGKTKLEGENFVKAL----NPKYYIVRTAWLYGD-GN---NFVKTMINLGKTHDELKVVHDQVGTPTSTVDLARVVLKV 207 (292)
T ss_dssp HHHHHHHHHHHHHHHH----CSSEEEEEECSEESS-SS---CHHHHHHHHHHHCSEEEEESSCEECCEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh----CCCeEEEeeeeeeCC-Cc---ChHHHHHHHHhcCCcEEeecCeeeCCccHHHHHHHHHHH
Confidence 7999999999999776 357999999999998 22 223334444455542 3466788999999999999999
Q ss_pred hcCCCCCccEEEec-CCCCHHHHHHHHHHhCCC
Q 023515 244 FEVPSANGRYCLVE-RVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 244 ~~~~~~~g~~~~~~-~~~t~~e~~~~i~~~~~~ 275 (281)
++++ .+++||+++ +.+|+.|+++.+.+.+|.
T Consensus 208 ~~~~-~~~~~~i~~~~~~s~~e~~~~i~~~~g~ 239 (292)
T 1vl0_A 208 IDEK-NYGTFHCTCKGICSWYDFAVEIFRLTGI 239 (292)
T ss_dssp HHHT-CCEEEECCCBSCEEHHHHHHHHHHHHCC
T ss_pred HhcC-CCcEEEecCCCCccHHHHHHHHHHHhCC
Confidence 9876 566899875 789999999999998874
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-34 Score=240.28 Aligned_cols=229 Identities=21% Similarity=0.199 Sum_probs=168.3
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEec
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a 89 (281)
|||||||||||||++|+++|+++||+|+++.|++.+.. + ..| +...+.++++|+|||+|
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~~--------------~---~~~----~~~~~~l~~~d~vihla 59 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPGR--------------I---TWD----ELAASGLPSCDAAVNLA 59 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTE--------------E---EHH----HHHHHCCCSCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcCe--------------e---ecc----hhhHhhccCCCEEEEec
Confidence 57999999999999999999999999999999764321 1 112 12234567899999999
Q ss_pred ccC-CCC----CCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccC
Q 023515 90 SPF-YHD----AKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQS 163 (281)
Q Consensus 90 ~~~-~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 163 (281)
+.. ... .....+..++.|+.+|.+|++++.... +...||+.||.++|+ + ....+.+|+++..+.
T Consensus 60 ~~~i~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~Ss~~vyg-~----~~~~~~~E~~p~~~~----- 129 (298)
T 4b4o_A 60 GENILNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVTGVAYYQ-P----SLTAEYDEDSPGGDF----- 129 (298)
T ss_dssp CCCSSCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEEEGGGSC-C----CSSCCBCTTCCCSCS-----
T ss_pred cCcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEeeeeeec-C----CCCCcccccCCcccc-----
Confidence 852 111 112234678899999999999999861 344688889876654 2 234567788776543
Q ss_pred CchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC-C--CCCCCCccceeHHHHHHHH
Q 023515 164 ELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA-Q--TYPNVTFGWVNVKDVANAH 240 (281)
Q Consensus 164 ~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~i~~~D~a~~i 240 (281)
+.|+..|...|... +....+++++++||+.||||... ...........+. . ..+++.++|||++|+|+++
T Consensus 130 -~~~~~~~~~~e~~~--~~~~~~~~~~~~r~~~v~g~~~~----~~~~~~~~~~~~~~~~~g~g~~~~~~ihv~Dva~a~ 202 (298)
T 4b4o_A 130 -DFFSNLVTKWEAAA--RLPGDSTRQVVVRSGVVLGRGGG----AMGHMLLPFRLGLGGPIGSGHQFFPWIHIGDLAGIL 202 (298)
T ss_dssp -SHHHHHHHHHHHHH--CCSSSSSEEEEEEECEEECTTSH----HHHHHHHHHHTTCCCCBTTSCSBCCEEEHHHHHHHH
T ss_pred -chhHHHHHHHHHHH--HhhccCCceeeeeeeeEEcCCCC----chhHHHHHHhcCCcceecccCceeecCcHHHHHHHH
Confidence 45777777766543 22456899999999999998731 1222333333443 2 2368899999999999999
Q ss_pred HHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCC
Q 023515 241 IQAFEVPSANGRYCLV-ERVSHYSEIVNIIRELYPAF 276 (281)
Q Consensus 241 ~~~~~~~~~~g~~~~~-~~~~t~~e~~~~i~~~~~~~ 276 (281)
+.+++++...|.||++ ++++|+.|+++.+++.++.+
T Consensus 203 ~~~~~~~~~~g~yn~~~~~~~t~~e~~~~ia~~lgrp 239 (298)
T 4b4o_A 203 THALEANHVHGVLNGVAPSSATNAEFAQTFGAALGRR 239 (298)
T ss_dssp HHHHHCTTCCEEEEESCSCCCBHHHHHHHHHHHHTCC
T ss_pred HHHHhCCCCCCeEEEECCCccCHHHHHHHHHHHhCcC
Confidence 9999998888899997 58899999999999998753
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=241.34 Aligned_cols=219 Identities=18% Similarity=0.229 Sum_probs=176.4
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEe
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~ 88 (281)
||+|||||||||||++++++|+++|++|++++|++.+... .+++++.+|++|++.+.++++++|+|||+
T Consensus 2 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----------~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ 70 (267)
T 3ay3_A 2 LNRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAE-----------AHEEIVACDLADAQAVHDLVKDCDGIIHL 70 (267)
T ss_dssp EEEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCCC-----------TTEEECCCCTTCHHHHHHHHTTCSEEEEC
T ss_pred CceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCccccC-----------CCccEEEccCCCHHHHHHHHcCCCEEEEC
Confidence 4689999999999999999999999999999998753211 35789999999999999999999999999
Q ss_pred cccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchhh
Q 023515 89 ASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYP 168 (281)
Q Consensus 89 a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~ 168 (281)
|+... ...++..+++|+.++.+++++|++. ++++|||+||..++... ....+++|+++..| .+.|+
T Consensus 71 a~~~~---~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~iv~~SS~~~~~~~----~~~~~~~E~~~~~~------~~~Y~ 136 (267)
T 3ay3_A 71 GGVSV---ERPWNDILQANIIGAYNLYEAARNL-GKPRIVFASSNHTIGYY----PRTTRIDTEVPRRP------DSLYG 136 (267)
T ss_dssp CSCCS---CCCHHHHHHHTHHHHHHHHHHHHHT-TCCEEEEEEEGGGSTTS----BTTSCBCTTSCCCC------CSHHH
T ss_pred CcCCC---CCCHHHHHHHHHHHHHHHHHHHHHh-CCCEEEEeCCHHHhCCC----CCCCCCCCCCCCCC------CChHH
Confidence 98752 3455688999999999999999997 78899999998776421 12346788877654 35699
Q ss_pred hhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC
Q 023515 169 LSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS 248 (281)
Q Consensus 169 ~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~ 248 (281)
.+|.++|.+++.+.+++|++++++||+.+|+.. . . +...++|+|++|+|++++.+++++.
T Consensus 137 ~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~~~~---~---~--------------~~~~~~~~~~~dva~~~~~~~~~~~ 196 (267)
T 3ay3_A 137 LSKCFGEDLASLYYHKFDIETLNIRIGSCFPKP---K---D--------------ARMMATWLSVDDFMRLMKRAFVAPK 196 (267)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEEEECBCSSSC---C---S--------------HHHHHHBCCHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeceeecCCC---C---C--------------CCeeeccccHHHHHHHHHHHHhCCC
Confidence 999999999999888889999999999998421 0 0 1124569999999999999998775
Q ss_pred CC-ccEEEe-cCCCCHHHHHHHHHHhCC
Q 023515 249 AN-GRYCLV-ERVSHYSEIVNIIRELYP 274 (281)
Q Consensus 249 ~~-g~~~~~-~~~~t~~e~~~~i~~~~~ 274 (281)
.. +.|++. +...++.|+.+. +.+|
T Consensus 197 ~~~~~~~~~~~~~~~~~d~~~~--~~lg 222 (267)
T 3ay3_A 197 LGCTVVYGASANTESWWDNDKS--AFLG 222 (267)
T ss_dssp CCEEEEEECCSCSSCCBCCGGG--GGGC
T ss_pred CCceeEecCCCccccccCHHHH--HHcC
Confidence 53 467765 456777777766 5555
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=263.36 Aligned_cols=261 Identities=18% Similarity=0.209 Sum_probs=190.6
Q ss_pred hccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcch-hhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--C
Q 023515 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKK-TRHLLALDGASERLQLFKANLLEEGSFDSIVD--G 81 (281)
Q Consensus 5 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~ 81 (281)
+.+++|+|||||||||||++|+++|+++|++|++++|....... +..+.... ..++.++++|++|++++.++++ +
T Consensus 7 ~~~~~~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~v~~v~~Dl~d~~~l~~~~~~~~ 84 (699)
T 1z45_A 7 SESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLT--KHHIPFYEVDLCDRKGLEKVFKEYK 84 (699)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHH--TSCCCEEECCTTCHHHHHHHHHHSC
T ss_pred cccCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCcchHHHHHHHhhcc--CCceEEEEcCCCCHHHHHHHHHhCC
Confidence 34568899999999999999999999999999999997654321 11111111 1468899999999999999988 8
Q ss_pred CcEeEEecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhh
Q 023515 82 CDGVCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVC 160 (281)
Q Consensus 82 ~d~Vih~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 160 (281)
+|+|||+||..... ........+++|+.++.+++++|++. ++++||++||.+++.... ......+++|+++..|
T Consensus 85 ~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~-~~~~iV~~SS~~vyg~~~-~~~~~~~~~E~~~~~p--- 159 (699)
T 1z45_A 85 IDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQY-NVSKFVFSSSATVYGDAT-RFPNMIPIPEECPLGP--- 159 (699)
T ss_dssp CCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEGGGGCCGG-GSTTCCSBCTTSCCCC---
T ss_pred CCEEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEECcHHHhCCCc-cccccCCccccCCCCC---
Confidence 99999999864321 11123478899999999999999987 788999999987654211 1011235667665543
Q ss_pred ccCCchhhhhHHHHHHHHHHHHHh--cCCcEEEEcCCcccCCCCCCC--------CCccHHHHHHHHhC--C--CCC---
Q 023515 161 KQSELWYPLSKTLAEDAAWKFAKE--KSIDLVTINPAMVIGPLLQPT--------LNTSAAAVLSLIKG--A--QTY--- 223 (281)
Q Consensus 161 ~~~~~~Y~~sK~~~e~~~~~~~~~--~g~~~~~irp~~v~g~~~~~~--------~~~~~~~~~~~~~~--~--~~~--- 223 (281)
.+.|+.+|.++|.+++.++++ .+++++++||+++|||..... .......+.+...+ . ..+
T Consensus 160 ---~~~Y~~sK~~~E~~~~~~~~~~~~g~~~~ilR~~~vyG~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 236 (699)
T 1z45_A 160 ---TNPYGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDD 236 (699)
T ss_dssp ---CSHHHHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC---
T ss_pred ---CChHHHHHHHHHHHHHHHHHhccCCCcEEEEEeccccCCCcccccccccccchhHHHHHHHHHHhcCCCceEEeCCc
Confidence 356999999999999998877 699999999999999863211 11222334444433 2 222
Q ss_pred -----CCCCccceeHHHHHHHHHHhhcCC------C-CCccEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 224 -----PNVTFGWVNVKDVANAHIQAFEVP------S-ANGRYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 224 -----~~~~~~~i~~~D~a~~i~~~~~~~------~-~~g~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
+.+.++|||++|+|++++.+++.. . .+++||++ ++.+|+.|+++.+.+.+|.
T Consensus 237 ~~~~~g~~~~~~i~v~Dva~a~~~a~~~~~~~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~ 301 (699)
T 1z45_A 237 YDSRDGTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGI 301 (699)
T ss_dssp ---CCSSCEECEEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTC
T ss_pred ccCCCCCeeEeeEEHHHHHHHHHHHHhhhhccccccCCceEEEECCCCCCcHHHHHHHHHHHhCC
Confidence 467789999999999999998642 1 23489986 5789999999999998864
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=237.46 Aligned_cols=242 Identities=14% Similarity=0.123 Sum_probs=185.2
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCC-----CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcC--
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRG-----YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG-- 81 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g-----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~-- 81 (281)
+|+|||||||||||++++++|+++| ++|++++|+...... ...+++++.+|++|++++.+++++
T Consensus 1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~~---------~~~~~~~~~~Dl~d~~~~~~~~~~~~ 71 (364)
T 2v6g_A 1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWH---------EDNPINYVQCDISDPDDSQAKLSPLT 71 (364)
T ss_dssp CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSCC---------CSSCCEEEECCTTSHHHHHHHHTTCT
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCcccc---------ccCceEEEEeecCCHHHHHHHHhcCC
Confidence 3689999999999999999999999 999999998765320 124688999999999999999987
Q ss_pred -CcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCC-CccEEE-------EeccceeeecCCCCCCCCeeeecC
Q 023515 82 -CDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVV-------LTSSMAAVLNTGKPRTPDVVVDET 152 (281)
Q Consensus 82 -~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v-------~~SS~~~~~~~~~~~~~~~~~~e~ 152 (281)
+|+|||+|+... ..++..+++|+.++.+++++|++.+ ++++|| |+||.++|. .. .....+++|+
T Consensus 72 ~~d~vih~a~~~~----~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~v~~~g~~i~~Ss~~vyg-~~--~~~~~~~~E~ 144 (364)
T 2v6g_A 72 DVTHVFYVTWANR----STEQENCEANSKMFRNVLDAVIPNCPNLKHISLQTGRKHYMGPFESYG-KI--ESHDPPYTED 144 (364)
T ss_dssp TCCEEEECCCCCC----SSHHHHHHHHHHHHHHHHHHHTTTCTTCCEEEEECCTHHHHCCGGGTT-TS--CCCCSSBCTT
T ss_pred CCCEEEECCCCCc----chHHHHHHHhHHHHHHHHHHHHHhccccceEEeccCceEEEechhhcc-cc--ccCCCCCCcc
Confidence 999999998753 2345889999999999999999863 578897 799986654 21 1123467788
Q ss_pred CCCChhhhccCCchhhhhHHHHHHHHHHHHHhcC-CcEEEEcCCcccCCCCCCCCCcc-HHHHHH-H--HhCCC--CCC-
Q 023515 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKS-IDLVTINPAMVIGPLLQPTLNTS-AAAVLS-L--IKGAQ--TYP- 224 (281)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g-~~~~~irp~~v~g~~~~~~~~~~-~~~~~~-~--~~~~~--~~~- 224 (281)
++..|. .+.| ..+|.++++++++++ ++++++||+.+|||......... ...+.+ . ..+.+ ..+
T Consensus 145 ~~~~~~-----~~~y----~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~ 215 (364)
T 2v6g_A 145 LPRLKY-----MNFY----YDLEDIMLEEVEKKEGLTWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFTGC 215 (364)
T ss_dssp SCCCSS-----CCHH----HHHHHHHHHHHTTSTTCEEEEEEESSEECCCTTCSSCHHHHHHHHHHHHHHHTCCBCCCSC
T ss_pred ccCCcc-----chhh----HHHHHHHHHHhhcCCCceEEEECCCceeCCCCCcccchHHHHHHHHHHHHhcCCceecCCC
Confidence 765541 2457 458999988887777 99999999999999865332221 221233 3 24542 233
Q ss_pred ----CCCccceeHHHHHHHHHHhhcCCCCCc-cEEEec-CCCCHHHHHHHHHHhCCC
Q 023515 225 ----NVTFGWVNVKDVANAHIQAFEVPSANG-RYCLVE-RVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 225 ----~~~~~~i~~~D~a~~i~~~~~~~~~~g-~~~~~~-~~~t~~e~~~~i~~~~~~ 275 (281)
....++++++|+|++++.+++++...| +||+++ +.+|+.|+++.+.+.+|.
T Consensus 216 ~~~~~~~~~~~~v~Dva~a~~~~~~~~~~~g~~~ni~~~~~~s~~e~~~~i~~~~g~ 272 (364)
T 2v6g_A 216 KAAWDGYSDCSDADLIAEHHIWAAVDPYAKNEAFNVSNGDVFKWKHFWKVLAEQFGV 272 (364)
T ss_dssp HHHHHSCBCCEEHHHHHHHHHHHHHCGGGTTEEEEECCSCCBCHHHHHHHHHHHHTC
T ss_pred cccccccCCCCcHHHHHHHHHHHHhCCCCCCceEEecCCCcCCHHHHHHHHHHHhCC
Confidence 244678899999999999998875444 899975 679999999999999874
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=244.54 Aligned_cols=208 Identities=21% Similarity=0.188 Sum_probs=173.7
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEe
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~ 88 (281)
|+|||||||||||++|+++|+++|+ +|+.++|+ +|++++.++++++|+|||+
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~---------------------------~d~~~l~~~~~~~d~Vih~ 53 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ---------------------------TKEEELESALLKADFIVHL 53 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTT---------------------------CCHHHHHHHHHHCSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCC---------------------------CCHHHHHHHhccCCEEEEC
Confidence 4799999999999999999999998 77777654 5667788888899999999
Q ss_pred cccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCcc-EEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchh
Q 023515 89 ASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIK-RVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWY 167 (281)
Q Consensus 89 a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y 167 (281)
||.... +.+...+++|+.++.+++++|++. +++ +|||+||.+++. .+.|
T Consensus 54 a~~~~~---~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~~v~~Ss~~~~~--------------------------~~~Y 103 (369)
T 3st7_A 54 AGVNRP---EHDKEFSLGNVSYLDHVLDILTRN-TKKPAILLSSSIQATQ--------------------------DNPY 103 (369)
T ss_dssp CCSBCT---TCSTTCSSSCCBHHHHHHHHHTTC-SSCCEEEEEEEGGGGS--------------------------CSHH
T ss_pred CcCCCC---CCHHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEeCchhhcC--------------------------CCCc
Confidence 997553 234578899999999999999998 666 999999987653 1459
Q ss_pred hhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCcc-HHHHHHHHhCCCCC---CCCCccceeHHHHHHHHHHh
Q 023515 168 PLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTS-AAAVLSLIKGAQTY---PNVTFGWVNVKDVANAHIQA 243 (281)
Q Consensus 168 ~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~i~~~D~a~~i~~~ 243 (281)
+.+|.++|++++.++++.|++++++||+++|||...+..+.. ..++..+..+.+.. +++.++|+|++|+|++++.+
T Consensus 104 ~~sK~~~E~~~~~~~~~~g~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~ 183 (369)
T 3st7_A 104 GESKLQGEQLLREYAEEYGNTVYIYRWPNLFGKWCKPNYNSVIATFCYKIARNEEIQVNDRNVELTLNYVDDIVAEIKRA 183 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTTSSCHHHHHHHHHHTTCCCCCSCTTCEEEEEEHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCCEEEEECCceeCCCCCCCcchHHHHHHHHHHcCCCeEecCCCeEEEEEEHHHHHHHHHHH
Confidence 999999999999999989999999999999999876654443 34445556665322 67889999999999999999
Q ss_pred hcCCCC--CccEEEe-cCCCCHHHHHHHHHHhCC
Q 023515 244 FEVPSA--NGRYCLV-ERVSHYSEIVNIIRELYP 274 (281)
Q Consensus 244 ~~~~~~--~g~~~~~-~~~~t~~e~~~~i~~~~~ 274 (281)
++++.. ++.|+++ ++.+|+.|+++.+.+.+|
T Consensus 184 l~~~~~~~~~~~~i~~~~~~s~~e~~~~~~~~~g 217 (369)
T 3st7_A 184 IEGTPTIENGVPTVPNVFKVTLGEIVDLLYKFKQ 217 (369)
T ss_dssp HHTCCCEETTEECCSCCEEEEHHHHHHHHHHHHH
T ss_pred HhCCcccCCceEEeCCCCceeHHHHHHHHHHHhC
Confidence 998876 5688887 478999999999998765
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-33 Score=224.48 Aligned_cols=213 Identities=16% Similarity=0.123 Sum_probs=160.4
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEec
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a 89 (281)
|+||||||||+||++++++|+++|++|++++|++.+...+. ..+++++++|++|+++ ++++++|+|||+|
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~--------~~~~~~~~~D~~d~~~--~~~~~~d~vi~~a 70 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRL--------GATVATLVKEPLVLTE--ADLDSVDAVVDAL 70 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHT--------CTTSEEEECCGGGCCH--HHHTTCSEEEECC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccccccccc--------CCCceEEecccccccH--hhcccCCEEEECC
Confidence 47999999999999999999999999999999865433211 1468999999999887 7788999999999
Q ss_pred ccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchhhh
Q 023515 90 SPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPL 169 (281)
Q Consensus 90 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~ 169 (281)
|.... . ...++|+.++.+++++|++. + ++||++||.++++..+.. .....+|...+. +.++|+.
T Consensus 71 g~~~~---~---~~~~~n~~~~~~l~~a~~~~-~-~~~v~~SS~~~~~~~~~~--~~~~~~~~~~~~------~~~~y~~ 134 (224)
T 3h2s_A 71 SVPWG---S---GRGYLHLDFATHLVSLLRNS-D-TLAVFILGSASLAMPGAD--HPMILDFPESAA------SQPWYDG 134 (224)
T ss_dssp CCCTT---S---SCTHHHHHHHHHHHHTCTTC-C-CEEEEECCGGGSBCTTCS--SCGGGGCCGGGG------GSTTHHH
T ss_pred ccCCC---c---chhhHHHHHHHHHHHHHHHc-C-CcEEEEecceeeccCCCC--ccccccCCCCCc------cchhhHH
Confidence 87521 1 23578999999999999998 7 899999998777643321 112333333322 2466999
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCCC
Q 023515 170 SKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPSA 249 (281)
Q Consensus 170 sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~~ 249 (281)
+|..+|.+ +.+.++.+++++++||+.+|||.....+ . ........+...++|++++|+|++++.+++++..
T Consensus 135 sK~~~e~~-~~~~~~~~i~~~ivrp~~v~g~~~~~~~--~------~~~~~~~~~~~~~~~i~~~DvA~~~~~~l~~~~~ 205 (224)
T 3h2s_A 135 ALYQYYEY-QFLQMNANVNWIGISPSEAFPSGPATSY--V------AGKDTLLVGEDGQSHITTGNMALAILDQLEHPTA 205 (224)
T ss_dssp HHHHHHHH-HHHTTCTTSCEEEEEECSBCCCCCCCCE--E------EESSBCCCCTTSCCBCCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHH-HHHHhcCCCcEEEEcCccccCCCcccCc--e------ecccccccCCCCCceEeHHHHHHHHHHHhcCccc
Confidence 99999954 5555567999999999999998532211 0 0001122345667899999999999999998876
Q ss_pred Cc-cEEEec
Q 023515 250 NG-RYCLVE 257 (281)
Q Consensus 250 ~g-~~~~~~ 257 (281)
.| +|++.+
T Consensus 206 ~g~~~~~~~ 214 (224)
T 3h2s_A 206 IRDRIVVRD 214 (224)
T ss_dssp TTSEEEEEE
T ss_pred cCCEEEEec
Confidence 55 888876
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-33 Score=251.46 Aligned_cols=232 Identities=15% Similarity=0.108 Sum_probs=173.7
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEe
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~ 88 (281)
+|+|||||||||||++|+++|+++|++|++++|+..+.. .+.+|+.+ .+.++++++|+|||+
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~----------------~v~~d~~~--~~~~~l~~~D~Vih~ 208 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPG----------------KRFWDPLN--PASDLLDGADVLVHL 208 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTT----------------CEECCTTS--CCTTTTTTCSEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCcc----------------ceeecccc--hhHHhcCCCCEEEEC
Confidence 789999999999999999999999999999999876421 14577764 346677899999999
Q ss_pred cccCCC--CCCCccchhhhhHHHHHHHHHHH-hhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCc
Q 023515 89 ASPFYH--DAKDPQVELLDPAVKGTLNVLNS-CAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL 165 (281)
Q Consensus 89 a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~-~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 165 (281)
|+.... ......+.++++|+.++.+++++ ++.. ++++|||+||+++|... ....+++|+++. + .+
T Consensus 209 A~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~-~~~r~V~~SS~~vyg~~----~~~~~~~E~~~~-~------~~ 276 (516)
T 3oh8_A 209 AGEPIFGRFNDSHKEAIRESRVLPTKFLAELVAEST-QCTTMISASAVGFYGHD----RGDEILTEESES-G------DD 276 (516)
T ss_dssp CCC-----CCGGGHHHHHHHTHHHHHHHHHHHHHCS-SCCEEEEEEEGGGGCSE----EEEEEECTTSCC-C------SS
T ss_pred CCCccccccchhHHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEeCcceEecCC----CCCCccCCCCCC-C------cC
Confidence 997432 12344557889999999999999 4554 78899999998765411 234567787765 2 25
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC-CC--CCCCCccceeHHHHHHHHHH
Q 023515 166 WYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA-QT--YPNVTFGWVNVKDVANAHIQ 242 (281)
Q Consensus 166 ~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~i~~~D~a~~i~~ 242 (281)
.|+.+|...|.++... +..|++++++||+.+|||.. .....+......+. .. .+++.++|+|++|+|++++.
T Consensus 277 ~y~~~~~~~E~~~~~~-~~~gi~~~ilRp~~v~Gp~~----~~~~~~~~~~~~g~~~~~g~g~~~~~~i~v~Dva~ai~~ 351 (516)
T 3oh8_A 277 FLAEVCRDWEHATAPA-SDAGKRVAFIRTGVALSGRG----GMLPLLKTLFSTGLGGKFGDGTSWFSWIAIDDLTDIYYR 351 (516)
T ss_dssp HHHHHHHHHHHTTHHH-HHTTCEEEEEEECEEEBTTB----SHHHHHHHTTC---CCCCTTSCCEECEEEHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH-HhCCCCEEEEEeeEEECCCC----ChHHHHHHHHHhCCCcccCCCCceEceEeHHHHHHHHHH
Confidence 6999999999887554 56799999999999999872 11222222222222 22 25788999999999999999
Q ss_pred hhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 243 AFEVPSANGRYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 243 ~~~~~~~~g~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
+++++...|.||++ ++.+|+.|+++.+.+.+|.
T Consensus 352 ~l~~~~~~g~~ni~~~~~~s~~el~~~i~~~~g~ 385 (516)
T 3oh8_A 352 AIVDAQISGPINAVAPNPVSNADMTKILATSMHR 385 (516)
T ss_dssp HHHCTTCCEEEEESCSCCEEHHHHHHHTTC----
T ss_pred HHhCcccCCcEEEECCCCCCHHHHHHHHHHHhCC
Confidence 99988777899987 5789999999999998874
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=230.64 Aligned_cols=212 Identities=17% Similarity=0.210 Sum_probs=169.9
Q ss_pred CeEEEeCCchHHHHHHHHHHHHC--CCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSR--GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 87 (281)
|+|||||||||||++++++|+++ |++|++++|++.+...+.. .+++++.+|++|++++.++++++|+|||
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~--------~~~~~~~~D~~d~~~l~~~~~~~d~vi~ 72 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLAD--------QGVEVRHGDYNQPESLQKAFAGVSKLLF 72 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHH--------TTCEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhh--------cCCeEEEeccCCHHHHHHHHhcCCEEEE
Confidence 47999999999999999999999 9999999998765433221 3578999999999999999999999999
Q ss_pred ecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchh
Q 023515 88 TASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWY 167 (281)
Q Consensus 88 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y 167 (281)
+|+... . . ++|+.++.+++++|++. ++++|||+||.+++. . ..+|
T Consensus 73 ~a~~~~----~---~--~~n~~~~~~l~~a~~~~-~~~~~v~~Ss~~~~~-~------------------------~~~y 117 (287)
T 2jl1_A 73 ISGPHY----D---N--TLLIVQHANVVKAARDA-GVKHIAYTGYAFAEE-S------------------------IIPL 117 (287)
T ss_dssp CCCCCS----C---H--HHHHHHHHHHHHHHHHT-TCSEEEEEEETTGGG-C------------------------CSTH
T ss_pred cCCCCc----C---c--hHHHHHHHHHHHHHHHc-CCCEEEEECCCCCCC-C------------------------CCch
Confidence 998521 1 1 67999999999999998 889999999986531 0 0249
Q ss_pred hhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHH-hCC--CCCCCCCccceeHHHHHHHHHHhh
Q 023515 168 PLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLI-KGA--QTYPNVTFGWVNVKDVANAHIQAF 244 (281)
Q Consensus 168 ~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~i~~~D~a~~i~~~~ 244 (281)
+.+|.++|.+++ +.|++++++||+.++|+... .. +.... .+. ...+++.++|+|++|+|++++.++
T Consensus 118 ~~~K~~~E~~~~----~~~~~~~ilrp~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~~ 186 (287)
T 2jl1_A 118 AHVHLATEYAIR----TTNIPYTFLRNALYTDFFVN---EG----LRASTESGAIVTNAGSGIVNSVTRNELALAAATVL 186 (287)
T ss_dssp HHHHHHHHHHHH----HTTCCEEEEEECCBHHHHSS---GG----GHHHHHHTEEEESCTTCCBCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HcCCCeEEEECCEeccccch---hh----HHHHhhCCceeccCCCCccCccCHHHHHHHHHHHh
Confidence 999999999985 36999999999998875411 11 22222 233 123577889999999999999999
Q ss_pred cCCCCCc-cEEEec-CCCCHHHHHHHHHHhCCC
Q 023515 245 EVPSANG-RYCLVE-RVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 245 ~~~~~~g-~~~~~~-~~~t~~e~~~~i~~~~~~ 275 (281)
+++...| .|++++ +.+|+.|+++.+.+.+|.
T Consensus 187 ~~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~ 219 (287)
T 2jl1_A 187 TEEGHENKTYNLVSNQPWTFDELAQILSEVSGK 219 (287)
T ss_dssp TSSSCTTEEEEECCSSCBCHHHHHHHHHHHHSS
T ss_pred cCCCCCCcEEEecCCCcCCHHHHHHHHHHHHCC
Confidence 8765444 899875 589999999999999874
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-33 Score=230.00 Aligned_cols=223 Identities=16% Similarity=0.135 Sum_probs=174.9
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcC--CcEeEE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG--CDGVCH 87 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~d~Vih 87 (281)
|+|||||||||||++++++|+ +|++|++++|++... .+ +++|++|++++.+++++ +|+|||
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~~~-------------~~---~~~Dl~~~~~~~~~~~~~~~d~vi~ 63 (273)
T 2ggs_A 1 MRTLITGASGQLGIELSRLLS-ERHEVIKVYNSSEIQ-------------GG---YKLDLTDFPRLEDFIIKKRPDVIIN 63 (273)
T ss_dssp CCEEEETTTSHHHHHHHHHHT-TTSCEEEEESSSCCT-------------TC---EECCTTSHHHHHHHHHHHCCSEEEE
T ss_pred CEEEEECCCChhHHHHHHHHh-cCCeEEEecCCCcCC-------------CC---ceeccCCHHHHHHHHHhcCCCEEEE
Confidence 379999999999999999999 589999999986321 12 78999999999999885 999999
Q ss_pred ecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCch
Q 023515 88 TASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (281)
Q Consensus 88 ~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 166 (281)
+||..... ..+.++..+++|+.++.+++++|.+. +. +|||+||..++.+. ..+++|+++..| .+.
T Consensus 64 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~iv~~SS~~~~~~~------~~~~~e~~~~~~------~~~ 129 (273)
T 2ggs_A 64 AAAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVI-DS-YIVHISTDYVFDGE------KGNYKEEDIPNP------INY 129 (273)
T ss_dssp CCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-TC-EEEEEEEGGGSCSS------SCSBCTTSCCCC------SSH
T ss_pred CCcccChhhhhhCHHHHHHHhHHHHHHHHHHHHHh-CC-eEEEEecceeEcCC------CCCcCCCCCCCC------CCH
Confidence 99864321 12345688999999999999999997 65 89999998876522 125677776554 356
Q ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCC--CCCCCCccceeHHHHHHHHHHhh
Q 023515 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--TYPNVTFGWVNVKDVANAHIQAF 244 (281)
Q Consensus 167 Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~D~a~~i~~~~ 244 (281)
|+.+|.++|.+++. ++++++||+.+||+. ......+.....+.+ ..++ .++|+|++|+|++++.++
T Consensus 130 Y~~sK~~~e~~~~~------~~~~~iR~~~v~G~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dva~~i~~~~ 197 (273)
T 2ggs_A 130 YGLSKLLGETFALQ------DDSLIIRTSGIFRNK-----GFPIYVYKTLKEGKTVFAFKG-YYSPISARKLASAILELL 197 (273)
T ss_dssp HHHHHHHHHHHHCC------TTCEEEEECCCBSSS-----SHHHHHHHHHHTTCCEEEESC-EECCCBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC------CCeEEEecccccccc-----HHHHHHHHHHHcCCCEEeecC-CCCceEHHHHHHHHHHHH
Confidence 99999999999855 678999999999821 222233344444442 2244 788999999999999999
Q ss_pred cCCCCCccEEEecCCCCHHHHHHHHHHhCCCC
Q 023515 245 EVPSANGRYCLVERVSHYSEIVNIIRELYPAF 276 (281)
Q Consensus 245 ~~~~~~g~~~~~~~~~t~~e~~~~i~~~~~~~ 276 (281)
+++. .|+||++++.+|+.|+++.+.+.+|..
T Consensus 198 ~~~~-~g~~~i~~~~~s~~e~~~~~~~~~g~~ 228 (273)
T 2ggs_A 198 ELRK-TGIIHVAGERISRFELALKIKEKFNLP 228 (273)
T ss_dssp HHTC-CEEEECCCCCEEHHHHHHHHHHHTTCC
T ss_pred hcCc-CCeEEECCCcccHHHHHHHHHHHhCCC
Confidence 8764 569998778899999999999998753
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-32 Score=220.19 Aligned_cols=209 Identities=16% Similarity=0.061 Sum_probs=160.7
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCC--EEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~ 84 (281)
|++|+|+||||+|+||++++++|+++|+ +|++++|++.+...... .++.++.+|++|++++.++++++|+
T Consensus 16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~--------~~~~~~~~D~~d~~~~~~~~~~~d~ 87 (242)
T 2bka_A 16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAY--------KNVNQEVVDFEKLDDYASAFQGHDV 87 (242)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGG--------GGCEEEECCGGGGGGGGGGGSSCSE
T ss_pred hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCcccccc--------CCceEEecCcCCHHHHHHHhcCCCE
Confidence 5678999999999999999999999999 99999998765433211 3578999999999999999999999
Q ss_pred eEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCC
Q 023515 85 VCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSE 164 (281)
Q Consensus 85 Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 164 (281)
||||||..... ..++..+++|+.++.++++++++. +.++||++||.+++.. +.
T Consensus 88 vi~~ag~~~~~--~~~~~~~~~n~~~~~~~~~~~~~~-~~~~iv~~SS~~~~~~------------------------~~ 140 (242)
T 2bka_A 88 GFCCLGTTRGK--AGAEGFVRVDRDYVLKSAELAKAG-GCKHFNLLSSKGADKS------------------------SN 140 (242)
T ss_dssp EEECCCCCHHH--HHHHHHHHHHTHHHHHHHHHHHHT-TCCEEEEECCTTCCTT------------------------CS
T ss_pred EEECCCccccc--CCcccceeeeHHHHHHHHHHHHHC-CCCEEEEEccCcCCCC------------------------Cc
Confidence 99999864321 234578899999999999999997 7889999999876531 11
Q ss_pred chhhhhHHHHHHHHHHHHHhcCC-cEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHh
Q 023515 165 LWYPLSKTLAEDAAWKFAKEKSI-DLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQA 243 (281)
Q Consensus 165 ~~Y~~sK~~~e~~~~~~~~~~g~-~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~ 243 (281)
..|+.+|.+.|.+++. .++ +++++|||.++||...+. .............+.. .....+++++|+|++++++
T Consensus 141 ~~Y~~sK~~~e~~~~~----~~~~~~~~vrpg~v~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~dva~~~~~~ 213 (242)
T 2bka_A 141 FLYLQVKGEVEAKVEE----LKFDRYSVFRPGVLLCDRQESR--PGEWLVRKFFGSLPDS-WASGHSVPVVTVVRAMLNN 213 (242)
T ss_dssp SHHHHHHHHHHHHHHT----TCCSEEEEEECCEEECTTGGGS--HHHHHHHHHHCSCCTT-GGGGTEEEHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHh----cCCCCeEEEcCceecCCCCCCc--HHHHHHHHhhcccCcc-ccCCcccCHHHHHHHHHHH
Confidence 3599999999999854 478 599999999999864321 1111222222222211 1123589999999999999
Q ss_pred hcCCCCCccEEEec
Q 023515 244 FEVPSANGRYCLVE 257 (281)
Q Consensus 244 ~~~~~~~g~~~~~~ 257 (281)
+.++...|.|++.+
T Consensus 214 ~~~~~~~~~~~~~~ 227 (242)
T 2bka_A 214 VVRPRDKQMELLEN 227 (242)
T ss_dssp HTSCCCSSEEEEEH
T ss_pred HhCccccCeeEeeH
Confidence 99887777777653
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-32 Score=224.21 Aligned_cols=230 Identities=17% Similarity=0.135 Sum_probs=170.5
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHC--CCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSR--GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~ 84 (281)
+++|+||||||+|+||++++++|+++ |++|++++|++.+... + ..++.++.+|++|++++.++++++|+
T Consensus 2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~---~------~~~~~~~~~D~~d~~~~~~~~~~~d~ 72 (253)
T 1xq6_A 2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEK---I------GGEADVFIGDITDADSINPAFQGIDA 72 (253)
T ss_dssp CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHH---T------TCCTTEEECCTTSHHHHHHHHTTCSE
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhh---c------CCCeeEEEecCCCHHHHHHHHcCCCE
Confidence 34789999999999999999999999 8999999997543222 1 13577899999999999999999999
Q ss_pred eEEecccCCCC-----------CC---CccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeee
Q 023515 85 VCHTASPFYHD-----------AK---DPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 85 Vih~a~~~~~~-----------~~---~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
|||+|+..... .. +.+...+++|+.++.+++++|++. +.++||++||.+++.
T Consensus 73 vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv~~SS~~~~~------------- 138 (253)
T 1xq6_A 73 LVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVA-GVKHIVVVGSMGGTN------------- 138 (253)
T ss_dssp EEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHH-TCSEEEEEEETTTTC-------------
T ss_pred EEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHc-CCCEEEEEcCccCCC-------------
Confidence 99999864311 01 112246799999999999999997 788999999986532
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccc
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGW 230 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (281)
+..+..+. ....|+.+|.++|.+++ +.|++++++||+.+||+..... ..... ...+.. ....++
T Consensus 139 ~~~~~~~~----~~~~y~~sK~~~e~~~~----~~~i~~~~vrpg~v~~~~~~~~-~~~~~------~~~~~~-~~~~~~ 202 (253)
T 1xq6_A 139 PDHPLNKL----GNGNILVWKRKAEQYLA----DSGTPYTIIRAGGLLDKEGGVR-ELLVG------KDDELL-QTDTKT 202 (253)
T ss_dssp TTCGGGGG----GGCCHHHHHHHHHHHHH----TSSSCEEEEEECEEECSCSSSS-CEEEE------STTGGG-GSSCCE
T ss_pred CCCccccc----cchhHHHHHHHHHHHHH----hCCCceEEEecceeecCCcchh-hhhcc------CCcCCc-CCCCcE
Confidence 01010000 01238889999999874 3799999999999999864311 00000 000111 124569
Q ss_pred eeHHHHHHHHHHhhcCCCCCc-cEEEecC----CCCHHHHHHHHHHhCCC
Q 023515 231 VNVKDVANAHIQAFEVPSANG-RYCLVER----VSHYSEIVNIIRELYPA 275 (281)
Q Consensus 231 i~~~D~a~~i~~~~~~~~~~g-~~~~~~~----~~t~~e~~~~i~~~~~~ 275 (281)
++++|+|++++.+++++...| .|++++. .+++.|+++.+.+.+|.
T Consensus 203 ~~~~Dva~~~~~~~~~~~~~g~~~~i~~~~~~~~~s~~e~~~~~~~~~g~ 252 (253)
T 1xq6_A 203 VPRADVAEVCIQALLFEEAKNKAFDLGSKPEGTSTPTKDFKALFSQVTSR 252 (253)
T ss_dssp EEHHHHHHHHHHHTTCGGGTTEEEEEEECCTTTSCCCCCHHHHHHTCCCC
T ss_pred EcHHHHHHHHHHHHcCccccCCEEEecCCCcCCCCCHHHHHHHHHHHhCC
Confidence 999999999999999876544 8988752 58999999999998876
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.98 E-value=7.4e-32 Score=217.63 Aligned_cols=210 Identities=14% Similarity=0.165 Sum_probs=145.5
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEec
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a 89 (281)
|+||||||||+||++++++|+++|++|++++|++++...+. .+++++++|++|+++ ++++++|+|||+|
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~---------~~~~~~~~D~~d~~~--~~~~~~d~vi~~a 69 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH---------KDINILQKDIFDLTL--SDLSDQNVVVDAY 69 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC---------SSSEEEECCGGGCCH--HHHTTCSEEEECC
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc---------CCCeEEeccccChhh--hhhcCCCEEEECC
Confidence 47999999999999999999999999999999865433211 368999999999887 7788999999999
Q ss_pred ccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchhhh
Q 023515 90 SPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPL 169 (281)
Q Consensus 90 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~ 169 (281)
|.... ..+.|+.++.+++++|++. +.+++|++||..++++... ..+..|+.+..| .+.|+.
T Consensus 70 g~~~~--------~~~~~~~~~~~l~~a~~~~-~~~~~v~~SS~~~~~~~~~----~~~~~~~~~~~~------~~~y~~ 130 (221)
T 3ew7_A 70 GISPD--------EAEKHVTSLDHLISVLNGT-VSPRLLVVGGAASLQIDED----GNTLLESKGLRE------APYYPT 130 (221)
T ss_dssp CSSTT--------TTTSHHHHHHHHHHHHCSC-CSSEEEEECCCC-----------------------------CCCSCC
T ss_pred cCCcc--------ccchHHHHHHHHHHHHHhc-CCceEEEEecceEEEcCCC----CccccccCCCCC------HHHHHH
Confidence 87332 2467999999999999998 7899999999988774321 123344444333 356999
Q ss_pred hHHHHHHHHHHHHH-hcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC
Q 023515 170 SKTLAEDAAWKFAK-EKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS 248 (281)
Q Consensus 170 sK~~~e~~~~~~~~-~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~ 248 (281)
+|...|.+ ..+.+ +.|++++++||+.+|||..... .+. .............++++++|+|++++.+++++.
T Consensus 131 ~k~~~e~~-~~~~~~~~gi~~~ivrp~~v~g~~~~~~------~~~-~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~ 202 (221)
T 3ew7_A 131 ARAQAKQL-EHLKSHQAEFSWTYISPSAMFEPGERTG------DYQ-IGKDHLLFGSDGNSFISMEDYAIAVLDEIERPN 202 (221)
T ss_dssp HHHHHHHH-HHHHTTTTTSCEEEEECSSCCCCC----------------------------CCCHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHH-HHHHhhccCccEEEEeCcceecCCCccC------ceE-eccccceecCCCCceEeHHHHHHHHHHHHhCcc
Confidence 99999997 34443 6799999999999999842211 010 001111111223469999999999999999887
Q ss_pred CCc-cEEEec
Q 023515 249 ANG-RYCLVE 257 (281)
Q Consensus 249 ~~g-~~~~~~ 257 (281)
..| .|++.+
T Consensus 203 ~~g~~~~~~~ 212 (221)
T 3ew7_A 203 HLNEHFTVAG 212 (221)
T ss_dssp CTTSEEECCC
T ss_pred ccCCEEEECC
Confidence 655 888876
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-31 Score=224.65 Aligned_cols=233 Identities=18% Similarity=0.151 Sum_probs=169.1
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++|+||||||+|+||++++++|+++|++|++++|+.++...+.... ..++.++++|++|.++++++++
T Consensus 3 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 77 (281)
T 3m1a_A 3 ESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAY-----PDRAEAISLDVTDGERIDVVAADVLARY 77 (281)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHC-----TTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc-----cCCceEEEeeCCCHHHHHHHHHHHHHhC
Confidence 45889999999999999999999999999999999876544432221 2478999999999998888776
Q ss_pred -CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 -GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 -~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
++|+||||||... ....+.++..+++|+.|+.++++++.+.+ +.++||++||..++.+.+
T Consensus 78 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~----------- 146 (281)
T 3m1a_A 78 GRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERGSGSVVNISSFGGQLSFA----------- 146 (281)
T ss_dssp SCCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCT-----------
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcCccccCCCC-----------
Confidence 7899999999632 22334567889999999777776665431 567999999987765211
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCC-------ccHHHH---HHHHh
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLN-------TSAAAV---LSLIK 218 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~-------~~~~~~---~~~~~ 218 (281)
....|+.||++.|.+++.++.+ +|+++++++||.+++|...+... ...... .....
T Consensus 147 -----------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (281)
T 3m1a_A 147 -----------GFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGKGAAYFSEENPAYAEKVGPTRQLVQ 215 (281)
T ss_dssp -----------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTCCCCEEECCBCTTTHHHHHHHHHHHH
T ss_pred -----------CchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCccccccccccccccCCcchhhHHHhHHHHHHHh
Confidence 2345999999999999999887 69999999999999886432211 111111 11112
Q ss_pred CCCCCCCCCccceeHHHHHHHHHHhhcCCCCCccEEEec-CCCCHHHHHHHHHH
Q 023515 219 GAQTYPNVTFGWVNVKDVANAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRE 271 (281)
Q Consensus 219 ~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~~~g~~~~~~-~~~t~~e~~~~i~~ 271 (281)
. ....++++++|+|++++++++++..++.|++++ ......+....+.+
T Consensus 216 ~-----~~~~~~~~~~dva~a~~~~~~~~~~~~~~~l~s~~~~~i~g~~~~i~~ 264 (281)
T 3m1a_A 216 G-----SDGSQPGDPAKAAAAIRLALDTEKTPLRLALGGDAVDFLTGHLDSVRA 264 (281)
T ss_dssp C----------CBCHHHHHHHHHHHHHSSSCCSEEEESHHHHHHHHHHHHHHHH
T ss_pred h-----ccCCCCCCHHHHHHHHHHHHhCCCCCeEEecCchHHHHHHHHHHHHHH
Confidence 1 234568899999999999999887777888874 44444555544444
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.9e-31 Score=218.77 Aligned_cols=240 Identities=18% Similarity=0.211 Sum_probs=177.6
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++|+|+||||+|+||++++++|+++|++|++++|+......+.... ....++.++++|++|++++.++++
T Consensus 14 l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 90 (278)
T 2bgk_A 14 LQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNI---GSPDVISFVHCDVTKDEDVRNLVDTTIAKH 90 (278)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---CCTTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHh---CCCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 46789999999999999999999999999999998754333222221 111368999999999999888876
Q ss_pred -CCcEeEEecccCCC-------CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeee
Q 023515 81 -GCDGVCHTASPFYH-------DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (281)
Q Consensus 81 -~~d~Vih~a~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (281)
++|+||||||.... ...+.++..+++|+.++.++++++.+.+ +.++||++||..++.+.+.
T Consensus 91 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~-------- 162 (278)
T 2bgk_A 91 GKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGEG-------- 162 (278)
T ss_dssp SCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCCTT--------
T ss_pred CCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEeeccccCCCCC--------
Confidence 79999999986421 1224466889999999999999998752 4579999999877642110
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCC
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (281)
....|+.+|.+.|.+++.++.+ .|++++++|||.++|+.................... +..
T Consensus 163 -------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~---~~~ 226 (278)
T 2bgk_A 163 -------------VSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQA---ANL 226 (278)
T ss_dssp -------------SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHT---CSS
T ss_pred -------------CCcchHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeceecchhhhhhcccchhHHHHhhhcc---ccc
Confidence 1245999999999999999876 589999999999999875433222222233322221 112
Q ss_pred CccceeHHHHHHHHHHhhcCCC--CCc-cEEEec-CCCCHHHHHHHHHHhC
Q 023515 227 TFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE-RVSHYSEIVNIIRELY 273 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~-~~~t~~e~~~~i~~~~ 273 (281)
...+++++|+|+++++++.... ..| .|++.+ ..+++.|+++.+.+.+
T Consensus 227 ~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~e~~~~i~~~~ 277 (278)
T 2bgk_A 227 KGTLLRAEDVADAVAYLAGDESKYVSGLNLVIDGGYTRTNPAFPTALKHGL 277 (278)
T ss_dssp CSCCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGCCTHHHHHSCSCC
T ss_pred ccccCCHHHHHHHHHHHcCcccccCCCCEEEECCcccccCCccchhhhhhc
Confidence 3458999999999999997543 245 667764 6789999999887643
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-32 Score=218.96 Aligned_cols=204 Identities=17% Similarity=0.121 Sum_probs=158.2
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCC--EEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
++|+|+||||||+||++++++|+++|+ +|++++|++.+. ..+++++.+|++|++++.+++ +|+|
T Consensus 4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~~------------~~~~~~~~~D~~~~~~~~~~~--~d~v 69 (215)
T 2a35_A 4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE------------HPRLDNPVGPLAELLPQLDGS--IDTA 69 (215)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCC------------CTTEECCBSCHHHHGGGCCSC--CSEE
T ss_pred CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCccc------------CCCceEEeccccCHHHHHHhh--hcEE
Confidence 367999999999999999999999998 999999987641 136888999999988888877 9999
Q ss_pred EEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCc
Q 023515 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL 165 (281)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 165 (281)
||+|+..... ...++..+++|+.++.+++++|++. +.++||++||..++.. +.+
T Consensus 70 i~~a~~~~~~-~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~Ss~~~~~~------------------------~~~ 123 (215)
T 2a35_A 70 FCCLGTTIKE-AGSEEAFRAVDFDLPLAVGKRALEM-GARHYLVVSALGADAK------------------------SSI 123 (215)
T ss_dssp EECCCCCHHH-HSSHHHHHHHHTHHHHHHHHHHHHT-TCCEEEEECCTTCCTT------------------------CSS
T ss_pred EECeeecccc-CCCHHHHHHhhHHHHHHHHHHHHHc-CCCEEEEECCcccCCC------------------------Ccc
Confidence 9999864422 2345688899999999999999998 8889999999876531 124
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCc-EEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhh
Q 023515 166 WYPLSKTLAEDAAWKFAKEKSID-LVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAF 244 (281)
Q Consensus 166 ~Y~~sK~~~e~~~~~~~~~~g~~-~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~ 244 (281)
.|+.+|.++|.+++. .+++ ++++||+.+|||...... +..........++..++++|++|+|++++.++
T Consensus 124 ~y~~sK~~~e~~~~~----~~~~~~~~vrp~~v~g~~~~~~~------~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~~ 193 (215)
T 2a35_A 124 FYNRVKGELEQALQE----QGWPQLTIARPSLLFGPREEFRL------AEILAAPIARILPGKYHGIEACDLARALWRLA 193 (215)
T ss_dssp HHHHHHHHHHHHHTT----SCCSEEEEEECCSEESTTSCEEG------GGGTTCCCC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----cCCCeEEEEeCceeeCCCCcchH------HHHHHHhhhhccCCCcCcEeHHHHHHHHHHHH
Confidence 599999999999854 5899 999999999998754211 11111111122233678999999999999999
Q ss_pred cCCCCCccEEEec-CCCCH
Q 023515 245 EVPSANGRYCLVE-RVSHY 262 (281)
Q Consensus 245 ~~~~~~g~~~~~~-~~~t~ 262 (281)
+++. ++.|++++ +..++
T Consensus 194 ~~~~-~~~~~i~~~~~~~~ 211 (215)
T 2a35_A 194 LEEG-KGVRFVESDELRKL 211 (215)
T ss_dssp TCCC-SEEEEEEHHHHHHH
T ss_pred hcCC-CCceEEcHHHHHHh
Confidence 9875 67899875 44443
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-31 Score=221.92 Aligned_cols=240 Identities=15% Similarity=0.128 Sum_probs=162.0
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhh-ccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLA-LDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
.+++|+++||||+|+||++++++|+++|++|++++|+.++.+.+.+... ......++.++++|++|+++++++++
T Consensus 3 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (278)
T 1spx_A 3 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG 82 (278)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999998654433322210 01112468999999999999888877
Q ss_pred ---CCcEeEEecccCCC-----C----CCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEecccee-eecCCCCCC
Q 023515 81 ---GCDGVCHTASPFYH-----D----AKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAA-VLNTGKPRT 144 (281)
Q Consensus 81 ---~~d~Vih~a~~~~~-----~----~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~-~~~~~~~~~ 144 (281)
++|+||||||.... . ..+.|+..+++|+.++.++++++.+.+ + ++||++||..+ +.+.+
T Consensus 83 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-g~iv~isS~~~~~~~~~---- 157 (278)
T 1spx_A 83 KFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK-GEIVNISSIASGLHATP---- 157 (278)
T ss_dssp HHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCTTSSSSCCT----
T ss_pred HcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEEecccccccCCC----
Confidence 89999999986321 1 334567889999999999999998853 3 79999999876 43110
Q ss_pred CCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHH------HHH
Q 023515 145 PDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAA------VLS 215 (281)
Q Consensus 145 ~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~------~~~ 215 (281)
....|+.+|.+.+.+++.++.+ .|+++++++||.++++............ ...
T Consensus 158 ------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~ 219 (278)
T 1spx_A 158 ------------------DFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMAT 219 (278)
T ss_dssp ------------------TSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHH
T ss_pred ------------------CccHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccCccccccccCchhhhhhhHHHHH
Confidence 1245999999999999998876 5899999999999998643211000000 122
Q ss_pred HHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC---CCc-cEEEec-CCCCHHHHHHHHHHhC
Q 023515 216 LIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS---ANG-RYCLVE-RVSHYSEIVNIIRELY 273 (281)
Q Consensus 216 ~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~---~~g-~~~~~~-~~~t~~e~~~~i~~~~ 273 (281)
.....+ ...+++++|+|+++++++..+. ..| .+++.| ..+++.|+++.+.+.+
T Consensus 220 ~~~~~p-----~~~~~~~~dvA~~v~~l~s~~~~~~~tG~~~~vdgG~~~~~~~~~~~~~~~~ 277 (278)
T 1spx_A 220 MKECVP-----AGVMGQPQDIAEVIAFLADRKTSSYIIGHQLVVDGGSSLIMGLHCQDFAKLL 277 (278)
T ss_dssp HHHHCT-----TSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGGC------------
T ss_pred HHhcCC-----CcCCCCHHHHHHHHHHHcCccccCcccCcEEEECCCcccccCcccccHHHHh
Confidence 222111 2348899999999999997543 346 556654 5789999999887753
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-30 Score=213.69 Aligned_cols=229 Identities=17% Similarity=0.089 Sum_probs=173.6
Q ss_pred hccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 5 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
+++++|+++||||+++||+++++.|+++|++|++++|+.++.+.+.++.+.. ..++.++++|++|+++++++++
T Consensus 3 ~sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~--g~~~~~~~~Dvt~~~~v~~~~~~~~~ 80 (254)
T 4fn4_A 3 QSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGM--GKEVLGVKADVSKKKDVEEFVRRTFE 80 (254)
T ss_dssp GGGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 4588999999999999999999999999999999999876655554443332 2578999999999999888775
Q ss_pred ---CCcEeEEecccCC------CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCee
Q 023515 81 ---GCDGVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVV 148 (281)
Q Consensus 81 ---~~d~Vih~a~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (281)
++|++|||||... +...+.|++.+++|+.|++++.+++.++| +..++|++||..+..+.+
T Consensus 81 ~~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~~g~~~~~-------- 152 (254)
T 4fn4_A 81 TYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGIRGGF-------- 152 (254)
T ss_dssp HHSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCSSS--------
T ss_pred HcCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEechhhcCCCC--------
Confidence 7899999998532 23445688999999999999999999863 457899999988765321
Q ss_pred eecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCC
Q 023515 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (281)
Q Consensus 149 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (281)
....|+.||.+...+.+.++.++ |+++++|.||.|.+|....................++.
T Consensus 153 --------------~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~-- 216 (254)
T 4fn4_A 153 --------------AGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIGLGSSKPSELGMRTLTKLMSLS-- 216 (254)
T ss_dssp --------------SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSCTTSCSSCCHHHHHHHHHHHTTC--
T ss_pred --------------CChHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCCCCcccccccCCcHHHHHHHHhcCCCC--
Confidence 12459999999999999999875 89999999999998864433322222222222211111
Q ss_pred CCccceeHHHHHHHHHHhhcCCCC--CccEEEecCCCC
Q 023515 226 VTFGWVNVKDVANAHIQAFEVPSA--NGRYCLVERVSH 261 (281)
Q Consensus 226 ~~~~~i~~~D~a~~i~~~~~~~~~--~g~~~~~~~~~t 261 (281)
..+..++|+|.++++++..... .|+.+..++.+|
T Consensus 217 --~R~g~pediA~~v~fLaSd~a~~iTG~~i~VDGG~t 252 (254)
T 4fn4_A 217 --SRLAEPEDIANVIVFLASDEASFVNGDAVVVDGGLT 252 (254)
T ss_dssp --CCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred --CCCcCHHHHHHHHHHHhCchhcCCcCCEEEeCCCcc
Confidence 2367899999999999976543 576666655544
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=218.60 Aligned_cols=210 Identities=15% Similarity=0.191 Sum_probs=163.4
Q ss_pred CeEEEeCCchHHHHHHHHHHHHC-CCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEe
Q 023515 10 KVVCVTGASGYIASWLVKLLLSR-GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~ 88 (281)
|+||||||||+||++++++|+++ |++|++++|++++...+. ..+++++++|++|++++.++++++|+|||+
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~--------~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~ 72 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDW--------RGKVSVRQLDYFNQESMVEAFKGMDTVVFI 72 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGG--------BTTBEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhh--------hCCCEEEEcCCCCHHHHHHHHhCCCEEEEe
Confidence 46999999999999999999998 899999999876543321 147899999999999999999999999999
Q ss_pred cccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchhh
Q 023515 89 ASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYP 168 (281)
Q Consensus 89 a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~ 168 (281)
|+.... ...|+.++.+++++|++. ++++|||+||.+... . .+|.
T Consensus 73 a~~~~~---------~~~~~~~~~~l~~aa~~~-gv~~iv~~Ss~~~~~--------------~------------~~~~ 116 (289)
T 3e48_A 73 PSIIHP---------SFKRIPEVENLVYAAKQS-GVAHIIFIGYYADQH--------------N------------NPFH 116 (289)
T ss_dssp CCCCCS---------HHHHHHHHHHHHHHHHHT-TCCEEEEEEESCCST--------------T------------CCST
T ss_pred CCCCcc---------chhhHHHHHHHHHHHHHc-CCCEEEEEcccCCCC--------------C------------CCCc
Confidence 985321 145899999999999998 889999999953211 0 1132
Q ss_pred hhH--HHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC---CCCCCCCccceeHHHHHHHHHHh
Q 023515 169 LSK--TLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA---QTYPNVTFGWVNVKDVANAHIQA 243 (281)
Q Consensus 169 ~sK--~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~D~a~~i~~~ 243 (281)
.++ ..+|..+ ++.|++++++||+.++|+.. ..+....... ...+++.++|++++|+|++++.+
T Consensus 117 ~~~~~~~~e~~~----~~~g~~~~ilrp~~~~~~~~--------~~~~~~~~~~~~~~~~g~~~~~~i~~~Dva~~~~~~ 184 (289)
T 3e48_A 117 MSPYFGYASRLL----STSGIDYTYVRMAMYMDPLK--------PYLPELMNMHKLIYPAGDGRINYITRNDIARGVIAI 184 (289)
T ss_dssp THHHHHHHHHHH----HHHCCEEEEEEECEESTTHH--------HHHHHHHHHTEECCCCTTCEEEEECHHHHHHHHHHH
T ss_pred cchhHHHHHHHH----HHcCCCEEEEeccccccccH--------HHHHHHHHCCCEecCCCCceeeeEEHHHHHHHHHHH
Confidence 222 3344433 45699999999999998631 2233332222 23367889999999999999999
Q ss_pred hcCCCC-CccEEEecCCCCHHHHHHHHHHhCCC
Q 023515 244 FEVPSA-NGRYCLVERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 244 ~~~~~~-~g~~~~~~~~~t~~e~~~~i~~~~~~ 275 (281)
+.++.. +++|+++++.+|+.|+++.+.+.+|.
T Consensus 185 l~~~~~~g~~~~~~~~~~s~~e~~~~~~~~~g~ 217 (289)
T 3e48_A 185 IKNPDTWGKRYLLSGYSYDMKELAAILSEASGT 217 (289)
T ss_dssp HHCGGGTTCEEEECCEEEEHHHHHHHHHHHHTS
T ss_pred HcCCCcCCceEEeCCCcCCHHHHHHHHHHHHCC
Confidence 998766 44898887789999999999999875
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-31 Score=220.46 Aligned_cols=208 Identities=15% Similarity=0.172 Sum_probs=161.6
Q ss_pred eEEEeCCchHHHHHHHHHHHHC--CCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEe
Q 023515 11 VVCVTGASGYIASWLVKLLLSR--GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~ 88 (281)
+|||||||||||++++++|+++ |++|++++|++.+...+.. .+++++++|++|++++.++++++|+|||+
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~--------~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ 72 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAA--------QGITVRQADYGDEAALTSALQGVEKLLLI 72 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHH--------TTCEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhc--------CCCeEEEcCCCCHHHHHHHHhCCCEEEEe
Confidence 4899999999999999999998 9999999998765433221 35789999999999999999999999999
Q ss_pred cccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchhh
Q 023515 89 ASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYP 168 (281)
Q Consensus 89 a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~ 168 (281)
|+... +.|+.++.+++++|++. ++++||++||..++. . ...|+
T Consensus 73 a~~~~-----------~~~~~~~~~l~~a~~~~-~~~~~v~~Ss~~~~~-~------------------------~~~y~ 115 (286)
T 2zcu_A 73 SSSEV-----------GQRAPQHRNVINAAKAA-GVKFIAYTSLLHADT-S------------------------PLGLA 115 (286)
T ss_dssp C-------------------CHHHHHHHHHHHH-TCCEEEEEEETTTTT-C------------------------CSTTH
T ss_pred CCCCc-----------hHHHHHHHHHHHHHHHc-CCCEEEEECCCCCCC-C------------------------cchhH
Confidence 98521 24788999999999997 789999999976531 0 02499
Q ss_pred hhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHH-hCC-C-CCCCCCccceeHHHHHHHHHHhhc
Q 023515 169 LSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLI-KGA-Q-TYPNVTFGWVNVKDVANAHIQAFE 245 (281)
Q Consensus 169 ~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~-~~~-~-~~~~~~~~~i~~~D~a~~i~~~~~ 245 (281)
.+|.++|.++++ .+++++++||+.++++.. . .+.+.. .+. . ..+++.++|+|++|+|++++.++.
T Consensus 116 ~sK~~~e~~~~~----~~~~~~ilrp~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~~~ 183 (286)
T 2zcu_A 116 DEHIETEKMLAD----SGIVYTLLRNGWYSENYL----A----SAPAALEHGVFIGAAGDGKIASATRADYAAAAARVIS 183 (286)
T ss_dssp HHHHHHHHHHHH----HCSEEEEEEECCBHHHHH----T----THHHHHHHTEEEESCTTCCBCCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----cCCCeEEEeChHHhhhhH----H----HhHHhhcCCceeccCCCCccccccHHHHHHHHHHHhc
Confidence 999999999854 589999999987665431 1 122222 222 1 235678899999999999999998
Q ss_pred CCCC-CccEEEec-CCCCHHHHHHHHHHhCCC
Q 023515 246 VPSA-NGRYCLVE-RVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 246 ~~~~-~g~~~~~~-~~~t~~e~~~~i~~~~~~ 275 (281)
++.. ++.|++++ +.+|+.|+++.+.+.+|.
T Consensus 184 ~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~ 215 (286)
T 2zcu_A 184 EAGHEGKVYELAGDSAWTLTQLAAELTKQSGK 215 (286)
T ss_dssp SSSCTTCEEEECCSSCBCHHHHHHHHHHHHSS
T ss_pred CCCCCCceEEEeCCCcCCHHHHHHHHHHHHCC
Confidence 7644 44899876 589999999999999874
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-31 Score=229.53 Aligned_cols=225 Identities=14% Similarity=0.109 Sum_probs=167.2
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCc-chhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--CCc
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP-KKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCD 83 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d 83 (281)
|++|+||||||||+||++|+++|+++|++|++++|+.... .....+..+. ..+++++++|++|.+++.++++ ++|
T Consensus 8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~--~~~v~~~~~Dl~d~~~l~~~~~~~~~d 85 (346)
T 3i6i_A 8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALE--DKGAIIVYGLINEQEAMEKILKEHEID 85 (346)
T ss_dssp ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHH--HTTCEEEECCTTCHHHHHHHHHHTTCC
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHH--hCCcEEEEeecCCHHHHHHHHhhCCCC
Confidence 4467899999999999999999999999999999987332 2222111111 1478999999999999999999 999
Q ss_pred EeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCC-ccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhcc
Q 023515 84 GVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQ 162 (281)
Q Consensus 84 ~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 162 (281)
+|||+|+. .|+.++.+++++|++. + +++||+ |+ +. . ..+|+.+..|.
T Consensus 86 ~Vi~~a~~--------------~n~~~~~~l~~aa~~~-g~v~~~v~-S~---~g-~--------~~~e~~~~~p~---- 133 (346)
T 3i6i_A 86 IVVSTVGG--------------ESILDQIALVKAMKAV-GTIKRFLP-SE---FG-H--------DVNRADPVEPG---- 133 (346)
T ss_dssp EEEECCCG--------------GGGGGHHHHHHHHHHH-CCCSEEEC-SC---CS-S--------CTTTCCCCTTH----
T ss_pred EEEECCch--------------hhHHHHHHHHHHHHHc-CCceEEee-cc---cC-C--------CCCccCcCCCc----
Confidence 99999975 2888999999999998 6 888886 43 21 1 12334443332
Q ss_pred CCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC----CCCCCCCccceeHHHHHH
Q 023515 163 SELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA----QTYPNVTFGWVNVKDVAN 238 (281)
Q Consensus 163 ~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~D~a~ 238 (281)
..|+.+|..+|+++++ .|++++++||+.++|....... ........+. ...+++.++|+|++|+|+
T Consensus 134 --~~y~~sK~~~e~~l~~----~g~~~tivrpg~~~g~~~~~~~----~~~~~~~~~~~~~~~g~g~~~~~~i~~~Dva~ 203 (346)
T 3i6i_A 134 --LNMYREKRRVRQLVEE----SGIPFTYICCNSIASWPYYNNI----HPSEVLPPTDFFQIYGDGNVKAYFVAGTDIGK 203 (346)
T ss_dssp --HHHHHHHHHHHHHHHH----TTCCBEEEECCEESSCCCSCC---------CCCCSSCEEEETTSCCCEEEECHHHHHH
T ss_pred --chHHHHHHHHHHHHHH----cCCCEEEEEecccccccCcccc----ccccccCCCceEEEccCCCceEEecCHHHHHH
Confidence 5699999999998854 6899999999999996532211 1000000111 122567899999999999
Q ss_pred HHHHhhcCCCC-CccEEEe--cCCCCHHHHHHHHHHhCCC
Q 023515 239 AHIQAFEVPSA-NGRYCLV--ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 239 ~i~~~~~~~~~-~g~~~~~--~~~~t~~e~~~~i~~~~~~ 275 (281)
+++.++.++.. ++.|++. ++.+|+.|+++.+.+.+|.
T Consensus 204 ~~~~~l~~~~~~~~~~~i~g~~~~~s~~e~~~~~~~~~g~ 243 (346)
T 3i6i_A 204 FTMKTVDDVRTLNKSVHFRPSCNCLNINELASVWEKKIGR 243 (346)
T ss_dssp HHHHHTTCGGGTTEEEECCCGGGEECHHHHHHHHHHHHTS
T ss_pred HHHHHHhCccccCeEEEEeCCCCCCCHHHHHHHHHHHHCC
Confidence 99999998765 4477775 5799999999999999875
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-30 Score=212.14 Aligned_cols=213 Identities=18% Similarity=0.161 Sum_probs=163.0
Q ss_pred chhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--
Q 023515 3 SVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-- 80 (281)
Q Consensus 3 ~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-- 80 (281)
+|+.+++|+||||||+|+||++++++|+++|++|++++|+...... .++.++++|++|+++++++++
T Consensus 22 ~m~~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~-----------~~~~~~~~Dv~d~~~v~~~~~~~ 90 (260)
T 3un1_A 22 SMMRNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSAD-----------PDIHTVAGDISKPETADRIVREG 90 (260)
T ss_dssp HHHHTTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCCSS-----------TTEEEEESCTTSHHHHHHHHHHH
T ss_pred hhhCcCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhccc-----------CceEEEEccCCCHHHHHHHHHHH
Confidence 3556788999999999999999999999999999999998754322 368999999999999888876
Q ss_pred -----CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhC---CCccEEEEeccceeeecCCCCCCCCe
Q 023515 81 -----GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDV 147 (281)
Q Consensus 81 -----~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (281)
++|+||||||... ....+.|+..+++|+.|+.++++++.+. .+.+++|++||..+....+.
T Consensus 91 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~------ 164 (260)
T 3un1_A 91 IERFGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQGSGHIVSITTSLVDQPMVG------ 164 (260)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCTTTTSCBTT------
T ss_pred HHHCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechhhccCCCC------
Confidence 7999999999633 2234556789999999999999998542 15679999999765431110
Q ss_pred eeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCC
Q 023515 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP 224 (281)
Q Consensus 148 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (281)
.+...|+.||.+.+.+++.++.++ |+++++++||.+++|..... .........
T Consensus 165 --------------~~~~~Y~~sKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~------~~~~~~~~~---- 220 (260)
T 3un1_A 165 --------------MPSALASLTKGGLNAVTRSLAMEFSRSGVRVNAVSPGVIKTPMHPAE------THSTLAGLH---- 220 (260)
T ss_dssp --------------CCCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECCBCCTTSCGG------GHHHHHTTS----
T ss_pred --------------CccHHHHHHHHHHHHHHHHHHHHhCcCCeEEEEEeecCCCCCCCCHH------HHHHHhccC----
Confidence 012459999999999999999887 89999999999999874321 111122211
Q ss_pred CCCccceeHHHHHHHHHHhhcCCCCCc-cEEEec
Q 023515 225 NVTFGWVNVKDVANAHIQAFEVPSANG-RYCLVE 257 (281)
Q Consensus 225 ~~~~~~i~~~D~a~~i~~~~~~~~~~g-~~~~~~ 257 (281)
....+.+++|+|++++++.+.....| .+++.|
T Consensus 221 -p~~r~~~~~dva~av~~L~~~~~itG~~i~vdG 253 (260)
T 3un1_A 221 -PVGRMGEIRDVVDAVLYLEHAGFITGEILHVDG 253 (260)
T ss_dssp -TTSSCBCHHHHHHHHHHHHHCTTCCSCEEEEST
T ss_pred -CCCCCcCHHHHHHHHHHhcccCCCCCcEEEECC
Confidence 23457899999999999966555566 556654
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.7e-31 Score=216.71 Aligned_cols=224 Identities=16% Similarity=0.136 Sum_probs=166.6
Q ss_pred hccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcC-CCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRD-PNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 5 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
+.+++|+|+||||+|+||++++++|+++|++|++++|+ .++.+.+....... ..++.++++|++|+++++++++
T Consensus 3 ~~l~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~ 80 (258)
T 3afn_B 3 PDLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRAD--GGDAAFFAADLATSEACQQLVDEFV 80 (258)
T ss_dssp GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999998 55544433322211 2478999999999999888887
Q ss_pred ----CCcEeEEeccc-CC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---C--c---cEEEEeccceeee-cCCC
Q 023515 81 ----GCDGVCHTASP-FY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---S--I---KRVVLTSSMAAVL-NTGK 141 (281)
Q Consensus 81 ----~~d~Vih~a~~-~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~--~---~~~v~~SS~~~~~-~~~~ 141 (281)
++|+||||||. .. ....+.++..+++|+.++.++++++.+.+ + . ++||++||..++. +.+
T Consensus 81 ~~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~- 159 (258)
T 3afn_B 81 AKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTGGGP- 159 (258)
T ss_dssp HHHSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHHHCCCT-
T ss_pred HHcCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhccCCCC-
Confidence 79999999986 22 11223466789999999999999887642 1 2 7899999986653 110
Q ss_pred CCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHh
Q 023515 142 PRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIK 218 (281)
Q Consensus 142 ~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~ 218 (281)
....|+.+|.+.|.+++.++.++ |++++++|||.++|+..... ..........
T Consensus 160 ---------------------~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~---~~~~~~~~~~ 215 (258)
T 3afn_B 160 ---------------------GAGLYGAAKAFLHNVHKNWVDFHTKDGVRFNIVSPGTVDTAFHADK---TQDVRDRISN 215 (258)
T ss_dssp ---------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSGGGTTC---CHHHHHHHHT
T ss_pred ---------------------CchHHHHHHHHHHHHHHHHHHhhcccCeEEEEEeCCCccccccccc---CHHHHHHHhc
Confidence 12459999999999999988765 89999999999999864432 2223333333
Q ss_pred CCCCCCCCCccceeHHHHHHHHHHhhcCCC---CCc-cEEEecCCC
Q 023515 219 GAQTYPNVTFGWVNVKDVANAHIQAFEVPS---ANG-RYCLVERVS 260 (281)
Q Consensus 219 ~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~---~~g-~~~~~~~~~ 260 (281)
+. ....+++++|+|+++++++.+.. ..| .|++.++..
T Consensus 216 ~~-----~~~~~~~~~dva~~~~~l~~~~~~~~~~G~~~~v~gg~~ 256 (258)
T 3afn_B 216 GI-----PMGRFGTAEEMAPAFLFFASHLASGYITGQVLDINGGQY 256 (258)
T ss_dssp TC-----TTCSCBCGGGTHHHHHHHHCHHHHTTCCSEEEEESTTSS
T ss_pred cC-----CCCcCCCHHHHHHHHHHHhCcchhccccCCEEeECCCcc
Confidence 32 23468999999999999997642 245 667766543
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-30 Score=211.60 Aligned_cols=222 Identities=15% Similarity=0.185 Sum_probs=168.3
Q ss_pred CcchhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc
Q 023515 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (281)
Q Consensus 1 ~~~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 80 (281)
|++|+.+++|+++||||+|+||++++++|+++|++|++++|+.+..+.+.+.. ..+..++++|++|+++++++++
T Consensus 1 M~~~~~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~ 75 (248)
T 3op4_A 1 MSQFMNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYL-----GDNGKGMALNVTNPESIEAVLK 75 (248)
T ss_dssp -CCTTCCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-----GGGEEEEECCTTCHHHHHHHHH
T ss_pred CccccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----cccceEEEEeCCCHHHHHHHHH
Confidence 67777788999999999999999999999999999999999875544433322 1357889999999998888876
Q ss_pred -------CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCC
Q 023515 81 -------GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTP 145 (281)
Q Consensus 81 -------~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~ 145 (281)
++|++|||||.... ...+.|+..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 76 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~----- 150 (248)
T 3op4_A 76 AITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGNA----- 150 (248)
T ss_dssp HHHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCT-----
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcCCCC-----
Confidence 78999999996432 2345677899999999999999998742 457899999987765321
Q ss_pred CeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCC
Q 023515 146 DVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT 222 (281)
Q Consensus 146 ~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~ 222 (281)
....|+.||.+.+.+++.++.++ |+++++++||.+.++..... ............
T Consensus 151 -----------------~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~---~~~~~~~~~~~~-- 208 (248)
T 3op4_A 151 -----------------GQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTKAL---NDEQRTATLAQV-- 208 (248)
T ss_dssp -----------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSTTTTTS---CHHHHHHHHHTC--
T ss_pred -----------------CChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEeeCCCCCchhhhc---CHHHHHHHHhcC--
Confidence 12459999999999999998864 89999999999998864432 122222222322
Q ss_pred CCCCCccceeHHHHHHHHHHhhcCCCC--Ccc-EEEec
Q 023515 223 YPNVTFGWVNVKDVANAHIQAFEVPSA--NGR-YCLVE 257 (281)
Q Consensus 223 ~~~~~~~~i~~~D~a~~i~~~~~~~~~--~g~-~~~~~ 257 (281)
....+.+++|+|+++++++..... .|. +++.|
T Consensus 209 ---p~~r~~~p~dva~~v~~L~s~~~~~itG~~i~vdg 243 (248)
T 3op4_A 209 ---PAGRLGDPREIASAVAFLASPEAAYITGETLHVNG 243 (248)
T ss_dssp ---TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred ---CCCCCcCHHHHHHHHHHHcCCccCCccCcEEEECC
Confidence 234578999999999999975433 464 44444
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-31 Score=217.85 Aligned_cols=224 Identities=16% Similarity=0.128 Sum_probs=164.9
Q ss_pred hhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 4 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
|..+++|++|||||+|+||++++++|+++|++|++++|+.++...+.... ..++.++++|++|+++++++++
T Consensus 3 m~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~ 77 (259)
T 4e6p_A 3 MKRLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI-----GPAAYAVQMDVTRQDSIDAAIAATV 77 (259)
T ss_dssp -CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCCceEEEeeCCCHHHHHHHHHHHH
Confidence 44567899999999999999999999999999999999765443332221 2468899999999998888876
Q ss_pred ----CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC----CccEEEEeccceeeecCCCCCCCCe
Q 023515 81 ----GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP----SIKRVVLTSSMAAVLNTGKPRTPDV 147 (281)
Q Consensus 81 ----~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (281)
++|+||||||... ....+.|+..+++|+.++.++++++.+.+ ..++||++||..++.+.+
T Consensus 78 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------- 150 (259)
T 4e6p_A 78 EHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRRGEA------- 150 (259)
T ss_dssp HHSSSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCT-------
T ss_pred HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhccCCC-------
Confidence 7999999999632 22345577889999999999999998752 146899999987765221
Q ss_pred eeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCC---
Q 023515 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--- 221 (281)
Q Consensus 148 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~--- 221 (281)
....|+.||.+.+.+++.++.++ |+++++++||.+++|..... ...+........
T Consensus 151 ---------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~----~~~~~~~~~~~~~~~ 211 (259)
T 4e6p_A 151 ---------------LVAIYCATKAAVISLTQSAGLDLIKHRINVNAIAPGVVDGEHWDGV----DALFARYENRPRGEK 211 (259)
T ss_dssp ---------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTHHHH----HHHHHHHHTCCTTHH
T ss_pred ---------------CChHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEECCCccchhhhh----hhhhhhhccCChHHH
Confidence 12459999999999999998775 89999999999999863210 011111110000
Q ss_pred --CC--CCCCccceeHHHHHHHHHHhhcCCCC--Cc-cEEEecC
Q 023515 222 --TY--PNVTFGWVNVKDVANAHIQAFEVPSA--NG-RYCLVER 258 (281)
Q Consensus 222 --~~--~~~~~~~i~~~D~a~~i~~~~~~~~~--~g-~~~~~~~ 258 (281)
.+ ......+.+++|+|+++++++..... .| .|++.|+
T Consensus 212 ~~~~~~~~p~~r~~~~~dva~~v~~L~s~~~~~itG~~i~vdgG 255 (259)
T 4e6p_A 212 KRLVGEAVPFGRMGTAEDLTGMAIFLASAESDYIVSQTYNVDGG 255 (259)
T ss_dssp HHHHHHHSTTSSCBCTHHHHHHHHHTTSGGGTTCCSCEEEESTT
T ss_pred HHHHhccCCCCCCcCHHHHHHHHHHHhCCccCCCCCCEEEECcC
Confidence 00 12345689999999999999975433 35 6666543
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-30 Score=213.00 Aligned_cols=225 Identities=15% Similarity=0.105 Sum_probs=166.7
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++|+|+||||+|+||++++++|+++|++|++++|+.++...+.+..... ..++.++++|++|+++++++++
T Consensus 8 ~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 85 (255)
T 1fmc_A 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL--GGQAFACRCDITSEQELSALADFAISK 85 (255)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHh--CCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 467899999999999999999999999999999999865443332222111 2468899999999998888876
Q ss_pred --CCcEeEEecccCCC----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 --GCDGVCHTASPFYH----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 --~~d~Vih~a~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
++|+||||||.... ...+.++..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 86 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~----------- 154 (255)
T 1fmc_A 86 LGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNI----------- 154 (255)
T ss_dssp HSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCT-----------
T ss_pred cCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcCCCC-----------
Confidence 89999999996432 1234456889999999999999997531 467999999987654111
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCc
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (281)
....|+.+|.+.|.+++.++.++ |++++++|||.++|+...... ..........+.+ ..
T Consensus 155 -----------~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~Pg~v~t~~~~~~~--~~~~~~~~~~~~~-----~~ 216 (255)
T 1fmc_A 155 -----------NMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVI--TPEIEQKMLQHTP-----IR 216 (255)
T ss_dssp -----------TCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTC--CHHHHHHHHHTCS-----SC
T ss_pred -----------CCcccHHHHHHHHHHHHHHHHHhhhcCcEEEEEecccCcchhhhhcc--ChHHHHHHHhcCC-----cc
Confidence 12459999999999999988764 899999999999987532211 2233333434332 24
Q ss_pred cceeHHHHHHHHHHhhcCCCC--Cc-cEEEec-CCCC
Q 023515 229 GWVNVKDVANAHIQAFEVPSA--NG-RYCLVE-RVSH 261 (281)
Q Consensus 229 ~~i~~~D~a~~i~~~~~~~~~--~g-~~~~~~-~~~t 261 (281)
.+++++|+|+++++++..... .| .|++.+ ...|
T Consensus 217 ~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~s 253 (255)
T 1fmc_A 217 RLGQPQDIANAALFLCSPAASWVSGQILTVSGGGVQE 253 (255)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSCCC
T ss_pred cCCCHHHHHHHHHHHhCCccccCCCcEEEECCceecc
Confidence 588999999999999976432 35 777764 4444
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-29 Score=200.87 Aligned_cols=200 Identities=14% Similarity=0.156 Sum_probs=151.2
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEe
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~ 88 (281)
+|+|+||||||+||++++++|+++|++|++++|++.+...+ ...+++++++|++|++++.++++++|+|||+
T Consensus 3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~--------~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~ 74 (206)
T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE--------GPRPAHVVVGDVLQAADVDKTVAGQDAVIVL 74 (206)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS--------SCCCSEEEESCTTSHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccc--------cCCceEEEEecCCCHHHHHHHHcCCCEEEEC
Confidence 47899999999999999999999999999999986543221 0246899999999999999999999999999
Q ss_pred cccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchhh
Q 023515 89 ASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYP 168 (281)
Q Consensus 89 a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~ 168 (281)
|+.... . ...++|+.++.+++++|++. +.++||++||..++.... .. + . ....|+
T Consensus 75 a~~~~~--~----~~~~~n~~~~~~~~~~~~~~-~~~~~v~~Ss~~~~~~~~-----~~------~-~------~~~~y~ 129 (206)
T 1hdo_A 75 LGTRND--L----SPTTVMSEGARNIVAAMKAH-GVDKVVACTSAFLLWDPT-----KV------P-P------RLQAVT 129 (206)
T ss_dssp CCCTTC--C----SCCCHHHHHHHHHHHHHHHH-TCCEEEEECCGGGTSCTT-----CS------C-G------GGHHHH
T ss_pred ccCCCC--C----CccchHHHHHHHHHHHHHHh-CCCeEEEEeeeeeccCcc-----cc------c-c------cchhHH
Confidence 986543 1 22368999999999999997 788999999986653111 00 0 0 124599
Q ss_pred hhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCC-CCCCCccHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCC
Q 023515 169 LSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLL-QPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP 247 (281)
Q Consensus 169 ~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~ 247 (281)
.+|.+.|.+++ +.+++++++||+.+. +.. ....... ..+.+ . .+|++++|+|++++.+++++
T Consensus 130 ~~K~~~e~~~~----~~~i~~~~lrp~~~~-~~~~~~~~~~~-------~~~~~---~--~~~i~~~Dva~~~~~~~~~~ 192 (206)
T 1hdo_A 130 DDHIRMHKVLR----ESGLKYVAVMPPHIG-DQPLTGAYTVT-------LDGRG---P--SRVISKHDLGHFMLRCLTTD 192 (206)
T ss_dssp HHHHHHHHHHH----HTCSEEEEECCSEEE-CCCCCSCCEEE-------SSSCS---S--CSEEEHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHH----hCCCCEEEEeCCccc-CCCCCcceEec-------ccCCC---C--CCccCHHHHHHHHHHHhcCc
Confidence 99999999884 468999999999983 332 1111000 01111 1 58999999999999999987
Q ss_pred CCCc-cEEEecC
Q 023515 248 SANG-RYCLVER 258 (281)
Q Consensus 248 ~~~g-~~~~~~~ 258 (281)
...| .|+++++
T Consensus 193 ~~~g~~~~i~~g 204 (206)
T 1hdo_A 193 EYDGHSTYPSHQ 204 (206)
T ss_dssp TTTTCEEEEECC
T ss_pred cccccceeeecc
Confidence 6545 7888754
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.3e-30 Score=210.84 Aligned_cols=225 Identities=15% Similarity=0.104 Sum_probs=164.0
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++|+|+||||+|+||++++++|+++|++|++++|+.++...+.+..... ..++.++++|++|+++++++++
T Consensus 11 l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 88 (260)
T 3awd_A 11 LDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRME--GHDVSSVVMDVTNTESVQNAVRSVHEQE 88 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 56899999999999999999999999999999999865433322222111 2468999999999998888775
Q ss_pred -CCcEeEEecccCC-C-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 -GCDGVCHTASPFY-H-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 -~~d~Vih~a~~~~-~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|+||||||... . ...+.++..+++|+.++.++++++.+.+ +.++||++||..++.+.+.
T Consensus 89 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~--------- 159 (260)
T 3awd_A 89 GRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSMSGLIVNRP--------- 159 (260)
T ss_dssp SCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCSS---------
T ss_pred CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEecchhcccCCC---------
Confidence 6899999999643 1 1223356889999999999999988632 4579999999866542110
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
. +...|+.+|.+.|.+++.++.+ .|++++++|||.++||....... ..........+.+ .
T Consensus 160 -----~------~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~~~~~~-~~~~~~~~~~~~~-----~ 222 (260)
T 3awd_A 160 -----Q------QQAAYNASKAGVHQYIRSLAAEWAPHGIRANAVAPTYIETTLTRFGME-KPELYDAWIAGTP-----M 222 (260)
T ss_dssp -----S------CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTHHHHT-CHHHHHHHHHTCT-----T
T ss_pred -----C------CccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeeccchhhcccC-ChHHHHHHHhcCC-----c
Confidence 0 1145999999999999999887 68999999999999986431100 1122233333321 2
Q ss_pred ccceeHHHHHHHHHHhhcCCC--CCc-cEEEecCC
Q 023515 228 FGWVNVKDVANAHIQAFEVPS--ANG-RYCLVERV 259 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~~~ 259 (281)
..+++++|+|+++++++.... ..| .|++.++.
T Consensus 223 ~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~ 257 (260)
T 3awd_A 223 GRVGQPDEVASVVQFLASDAASLMTGAIVNVDAGF 257 (260)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred CCCCCHHHHHHHHHHHhCchhccCCCcEEEECCce
Confidence 358899999999999997532 245 56666543
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-30 Score=212.71 Aligned_cols=218 Identities=20% Similarity=0.182 Sum_probs=157.2
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++|++|||||+|+||++++++|+++|++|++++|+.+..+...... ..++.++++|++|.++++++++
T Consensus 4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 78 (257)
T 3tpc_A 4 QLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAEL-----GAAVRFRNADVTNEADATAALAFAKQE 78 (257)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC-----------------CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh-----CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999887654433221 2468899999999998888876
Q ss_pred --CCcEeEEecccCCC---------CCCCccchhhhhHHHHHHHHHHHhhhCC---------CccEEEEeccceeeecCC
Q 023515 81 --GCDGVCHTASPFYH---------DAKDPQVELLDPAVKGTLNVLNSCAKFP---------SIKRVVLTSSMAAVLNTG 140 (281)
Q Consensus 81 --~~d~Vih~a~~~~~---------~~~~~~~~~~~~n~~~~~~l~~~~~~~~---------~~~~~v~~SS~~~~~~~~ 140 (281)
++|++|||||.... ...+.|+..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 79 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~~~~~ 158 (257)
T 3tpc_A 79 FGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFDGQI 158 (257)
T ss_dssp HSCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHCCT
T ss_pred cCCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhccCCC
Confidence 79999999997432 2234567889999999999999998752 346799999988775321
Q ss_pred CCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHH
Q 023515 141 KPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLI 217 (281)
Q Consensus 141 ~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~ 217 (281)
....|+.||.+.+.+++.++.+ .|+++++++||.|.++...... .......
T Consensus 159 ----------------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~----~~~~~~~ 212 (257)
T 3tpc_A 159 ----------------------GQAAYAASKGGVAALTLPAARELARFGIRVVTIAPGIFDTPMMAGMP----QDVQDAL 212 (257)
T ss_dssp ----------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSCC-----------------
T ss_pred ----------------------CCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEeCCCCChhhccCC----HHHHHHH
Confidence 1245999999999999999887 5899999999999998643211 1111111
Q ss_pred hCCCCCCCCCccceeHHHHHHHHHHhhcCCCCCccEEEec
Q 023515 218 KGAQTYPNVTFGWVNVKDVANAHIQAFEVPSANGRYCLVE 257 (281)
Q Consensus 218 ~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~~~g~~~~~~ 257 (281)
..... ....+.+++|+|++++++++.....|+.+..+
T Consensus 213 ~~~~p---~~~r~~~~~dva~~v~~l~s~~~itG~~i~vd 249 (257)
T 3tpc_A 213 AASVP---FPPRLGRAEEYAALVKHICENTMLNGEVIRLD 249 (257)
T ss_dssp -CCSS---SSCSCBCHHHHHHHHHHHHHCTTCCSCEEEES
T ss_pred HhcCC---CCCCCCCHHHHHHHHHHHcccCCcCCcEEEEC
Confidence 11111 11357899999999999998765567554443
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-30 Score=212.72 Aligned_cols=224 Identities=19% Similarity=0.193 Sum_probs=167.7
Q ss_pred chhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--
Q 023515 3 SVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-- 80 (281)
Q Consensus 3 ~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-- 80 (281)
+|+.+++|+++||||+|+||++++++|+++|++|++++|+.++.+.+........ ..++.++++|++|+++++++++
T Consensus 4 ~m~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~ 82 (262)
T 3pk0_A 4 SMFDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLG-SGKVIGVQTDVSDRAQCDALAGRA 82 (262)
T ss_dssp CTTCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTS-SSCEEEEECCTTSHHHHHHHHHHH
T ss_pred CccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhC-CCcEEEEEcCCCCHHHHHHHHHHH
Confidence 4666789999999999999999999999999999999998765544333322211 2478999999999998888776
Q ss_pred -----CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceee-ecCCCCCCCC
Q 023515 81 -----GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAV-LNTGKPRTPD 146 (281)
Q Consensus 81 -----~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~-~~~~~~~~~~ 146 (281)
++|++|||||... ....+.|+..+++|+.++.++++++.+.+ +.+++|++||..+. .+.+
T Consensus 83 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~------ 156 (262)
T 3pk0_A 83 VEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSITGPITGYP------ 156 (262)
T ss_dssp HHHHSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCEEEEECCSBTTTBCCT------
T ss_pred HHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhccCCCC------
Confidence 7999999999633 22334567889999999999999998853 45799999998654 2111
Q ss_pred eeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCC
Q 023515 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY 223 (281)
Q Consensus 147 ~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~ 223 (281)
....|+.||.+.+.+++.++.+ .|+++++++||.++++..... ............+
T Consensus 157 ----------------~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~---~~~~~~~~~~~~p-- 215 (262)
T 3pk0_A 157 ----------------GWSHYGATKAAQLGFMRTAAIELAPHKITVNAIMPGNIMTEGLLEN---GEEYIASMARSIP-- 215 (262)
T ss_dssp ----------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHTT---CHHHHHHHHTTST--
T ss_pred ----------------CChhhHHHHHHHHHHHHHHHHHHHhhCcEEEEEEeCcCcCcccccc---CHHHHHHHHhcCC--
Confidence 1245999999999999999887 589999999999998753221 1222333333221
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCC--CCc-cEEEec
Q 023515 224 PNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (281)
Q Consensus 224 ~~~~~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~ 257 (281)
...+.+++|+|+++++++.... ..| .+++.|
T Consensus 216 ---~~r~~~p~dva~~v~~L~s~~~~~itG~~i~vdG 249 (262)
T 3pk0_A 216 ---AGALGTPEDIGHLAAFLATKEAGYITGQAIAVDG 249 (262)
T ss_dssp ---TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred ---CCCCcCHHHHHHHHHHHhCccccCCcCCEEEECC
Confidence 2347799999999999997643 356 455544
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.8e-31 Score=214.82 Aligned_cols=228 Identities=14% Similarity=0.101 Sum_probs=169.4
Q ss_pred CcchhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc
Q 023515 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (281)
Q Consensus 1 ~~~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 80 (281)
|++|.++++|+++||||+++||+++++.|+++|++|++.+|+.+..+...+..... ..++.++++|++|+++++++++
T Consensus 1 Ms~~f~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~--g~~~~~~~~Dv~~~~~v~~~~~ 78 (255)
T 4g81_D 1 MTALFDLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRK--GYDAHGVAFDVTDELAIEAAFS 78 (255)
T ss_dssp --CTTCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHT--TCCEEECCCCTTCHHHHHHHHH
T ss_pred CCCCcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEeeCCCHHHHHHHHH
Confidence 77787899999999999999999999999999999999999876554443333222 2578999999999998888775
Q ss_pred -------CCcEeEEeccc-----CCCCCCCccchhhhhHHHHHHHHHHHhhhCC----CccEEEEeccceeeecCCCCCC
Q 023515 81 -------GCDGVCHTASP-----FYHDAKDPQVELLDPAVKGTLNVLNSCAKFP----SIKRVVLTSSMAAVLNTGKPRT 144 (281)
Q Consensus 81 -------~~d~Vih~a~~-----~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~~~v~~SS~~~~~~~~~~~~ 144 (281)
++|++|||||. +.+...+.|+..+++|+.|++.+.+++.+++ +..++|++||..+..+.+
T Consensus 79 ~~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~~~~---- 154 (255)
T 4g81_D 79 KLDAEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQAARP---- 154 (255)
T ss_dssp HHHHTTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSBCT----
T ss_pred HHHHHCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcCCCC----
Confidence 68999999985 2234456788999999999999999988753 346899999988765321
Q ss_pred CCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCC
Q 023515 145 PDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ 221 (281)
Q Consensus 145 ~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~ 221 (281)
....|+.||.+...+.+.++.++ |+++++|.||.|.+|....... ............|
T Consensus 155 ------------------~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~-~~~~~~~~~~~~P 215 (255)
T 4g81_D 155 ------------------TVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYILTDMNTALIE-DKQFDSWVKSSTP 215 (255)
T ss_dssp ------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGHHHHT-CHHHHHHHHHHST
T ss_pred ------------------CchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCCchhhcccC-CHHHHHHHHhCCC
Confidence 12459999999999999998874 8999999999998875321100 1111122222211
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCCC--CCccEEEecC
Q 023515 222 TYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVER 258 (281)
Q Consensus 222 ~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~~ 258 (281)
...+..++|+|.++++++.... -.|+.+..++
T Consensus 216 -----l~R~g~pediA~~v~fL~S~~a~~iTG~~i~VDG 249 (255)
T 4g81_D 216 -----SQRWGRPEELIGTAIFLSSKASDYINGQIIYVDG 249 (255)
T ss_dssp -----TCSCBCGGGGHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred -----CCCCcCHHHHHHHHHHHhCchhCCCcCCEEEECC
Confidence 1236799999999999997543 3565554443
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-30 Score=223.05 Aligned_cols=223 Identities=15% Similarity=0.170 Sum_probs=167.1
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcC-CCCcCcHHHHhcCCcEeE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKAN-LLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~~~~~~~~~d~Vi 86 (281)
++|+|+|||||||||++++++|+++|++|++++|++++... ..+.. ..+++++++| ++|++++.++++++|+||
T Consensus 4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~-~~l~~----~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi 78 (352)
T 1xgk_A 4 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIA-EELQA----IPNVTLFQGPLLNNVPLMDTLFEGAHLAF 78 (352)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHH-HHHHT----STTEEEEESCCTTCHHHHHHHHTTCSEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhH-HHHhh----cCCcEEEECCccCCHHHHHHHHhcCCEEE
Confidence 36789999999999999999999999999999998765411 11110 1368899999 999999999999999999
Q ss_pred EecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCC-ccEEEEecccee-eecCCCCCCCCeeeecCCCCChhhhccCC
Q 023515 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAA-VLNTGKPRTPDVVVDETWFSDPEVCKQSE 164 (281)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~SS~~~-~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 164 (281)
|+++... .+.|..+ .+++++|++. + +++|||+||... .++.. ..
T Consensus 79 ~~a~~~~----------~~~~~~~-~~l~~aa~~~-g~v~~~V~~SS~~~~~~~~~----------------------~~ 124 (352)
T 1xgk_A 79 INTTSQA----------GDEIAIG-KDLADAAKRA-GTIQHYIYSSMPDHSLYGPW----------------------PA 124 (352)
T ss_dssp ECCCSTT----------SCHHHHH-HHHHHHHHHH-SCCSEEEEEECCCGGGTSSC----------------------CC
T ss_pred EcCCCCC----------cHHHHHH-HHHHHHHHHc-CCccEEEEeCCccccccCCC----------------------CC
Confidence 9986421 1347777 9999999997 7 899999999752 22110 12
Q ss_pred chhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC-----CCCCCCCccceeH-HHHHH
Q 023515 165 LWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA-----QTYPNVTFGWVNV-KDVAN 238 (281)
Q Consensus 165 ~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~-~D~a~ 238 (281)
..|+.+|.++|+++++ .+++++++||+ +||++.......... ......+. +..+++.++|+|+ +|+|+
T Consensus 125 ~~y~~sK~~~E~~~~~----~gi~~~ivrpg-~~g~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~i~v~~Dva~ 198 (352)
T 1xgk_A 125 VPMWAPKFTVENYVRQ----LGLPSTFVYAG-IYNNNFTSLPYPLFQ-MELMPDGTFEWHAPFDPDIPLPWLDAEHDVGP 198 (352)
T ss_dssp CTTTHHHHHHHHHHHT----SSSCEEEEEEC-EEGGGCBSSSCSSCB-EEECTTSCEEEEESSCTTSCEEEECHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH----cCCCEEEEecc-eecCCchhccccccc-ccccCCCceEEeeccCCCCceeeEecHHHHHH
Confidence 3599999999999855 48999999986 688764321100000 00001222 1225778899999 89999
Q ss_pred HHHHhhcCCC---CCccEEEecCCCCHHHHHHHHHHhCCC
Q 023515 239 AHIQAFEVPS---ANGRYCLVERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 239 ~i~~~~~~~~---~~g~~~~~~~~~t~~e~~~~i~~~~~~ 275 (281)
+++.++.++. .+++|+++++.+|+.|+++.+.+.+|.
T Consensus 199 ai~~~l~~~~~~~~g~~~~l~~~~~s~~e~~~~i~~~~G~ 238 (352)
T 1xgk_A 199 ALLQIFKDGPQKWNGHRIALTFETLSPVQVCAAFSRALNR 238 (352)
T ss_dssp HHHHHHHHCHHHHTTCEEEECSEEECHHHHHHHHHHHHTS
T ss_pred HHHHHHhCCchhhCCeEEEEecCCCCHHHHHHHHHHHHCC
Confidence 9999998652 356899988889999999999999875
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=212.76 Aligned_cols=230 Identities=17% Similarity=0.107 Sum_probs=164.6
Q ss_pred hhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 4 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
|+.+++|+|+||||+|+||++++++|+++|++|++++|+.++.+.+.... ..++.++++|++|.++++++++
T Consensus 11 ~~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~d~~~v~~~~~~~~ 85 (291)
T 3rd5_A 11 LPSFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTM-----AGQVEVRELDLQDLSSVRRFADGVS 85 (291)
T ss_dssp CCCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTS-----SSEEEEEECCTTCHHHHHHHHHTCC
T ss_pred ccCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----cCCeeEEEcCCCCHHHHHHHHHhcC
Confidence 45577899999999999999999999999999999999876544332221 2579999999999999999887
Q ss_pred CCcEeEEecccCCC---CCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCCh
Q 023515 81 GCDGVCHTASPFYH---DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDP 157 (281)
Q Consensus 81 ~~d~Vih~a~~~~~---~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~ 157 (281)
++|+||||||.... ...+.++..+++|+.++.++++++.+. -.++||++||..++.+.... .....+..+..+
T Consensus 86 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~-~~~riv~isS~~~~~~~~~~---~~~~~~~~~~~~ 161 (291)
T 3rd5_A 86 GADVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPR-LTDRVVTVSSMAHWPGRINL---EDLNWRSRRYSP 161 (291)
T ss_dssp CEEEEEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGG-EEEEEEEECCGGGTTCCCCS---SCTTCSSSCCCH
T ss_pred CCCEEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHhheeEeechhhccCCCCc---ccccccccCCCC
Confidence 67999999997432 245667899999999999999999998 45699999998776532211 001111122222
Q ss_pred hhhccCCchhhhhHHHHHHHHHHHHHhc---C--CcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCcccee
Q 023515 158 EVCKQSELWYPLSKTLAEDAAWKFAKEK---S--IDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVN 232 (281)
Q Consensus 158 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g--~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 232 (281)
...|+.||++.+.+++.+++++ | +++++++||.|.++............+... ...+-..+
T Consensus 162 ------~~~Y~~sK~a~~~~~~~la~e~~~~g~~i~v~~v~PG~v~T~~~~~~~~~~~~~~~~~--------~~~~~~~~ 227 (291)
T 3rd5_A 162 ------WLAYSQSKLANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNLQGASGRKLGDALMSA--------ATRVVATD 227 (291)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCSGGGSCC----------------------------CHH
T ss_pred ------cchHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEeeCCCCccccccccchHHHHHHHHH--------HHHHHhCC
Confidence 2459999999999999998765 5 999999999999886433211111111100 01122346
Q ss_pred HHHHHHHHHHhhcCCCCCccEEEe
Q 023515 233 VKDVANAHIQAFEVPSANGRYCLV 256 (281)
Q Consensus 233 ~~D~a~~i~~~~~~~~~~g~~~~~ 256 (281)
++|+|+++++++..+...|.|+..
T Consensus 228 ~~~~A~~~~~l~~~~~~~G~~~~v 251 (291)
T 3rd5_A 228 ADFGARQTLYAASQDLPGDSFVGP 251 (291)
T ss_dssp HHHHHHHHHHHHHSCCCTTCEEEE
T ss_pred HHHHHHHHHHHHcCCCCCCceeCC
Confidence 999999999999987667766554
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-30 Score=217.19 Aligned_cols=223 Identities=13% Similarity=0.130 Sum_probs=170.3
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 87 (281)
+|+|+||||||+||++++++|+++| ++|++++|++.+... ..+. ..+++++++|++|++++.++++++|+|||
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~-~~l~-----~~~~~~~~~D~~d~~~l~~~~~~~d~vi~ 78 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAA-KELR-----LQGAEVVQGDQDDQVIMELALNGAYATFI 78 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHH-HHHH-----HTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHH-HHHH-----HCCCEEEEecCCCHHHHHHHHhcCCEEEE
Confidence 6789999999999999999999998 999999998765321 1111 13588999999999999999999999999
Q ss_pred ecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchh
Q 023515 88 TASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWY 167 (281)
Q Consensus 88 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y 167 (281)
+|+.... ...+.|+.++.+++++|++. ++++||++||..++. .. ++. +...|
T Consensus 79 ~a~~~~~-------~~~~~~~~~~~~~~~aa~~~-gv~~iv~~S~~~~~~-~~----------~~~---------~~~~y 130 (299)
T 2wm3_A 79 VTNYWES-------CSQEQEVKQGKLLADLARRL-GLHYVVYSGLENIKK-LT----------AGR---------LAAAH 130 (299)
T ss_dssp CCCHHHH-------TCHHHHHHHHHHHHHHHHHH-TCSEEEECCCCCHHH-HT----------TTS---------CCCHH
T ss_pred eCCCCcc-------ccchHHHHHHHHHHHHHHHc-CCCEEEEEcCccccc-cC----------CCc---------ccCch
Confidence 9975321 12357889999999999997 889999977754432 11 110 12459
Q ss_pred hhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC-----CCCCCCCccceeHHHHHHHHHH
Q 023515 168 PLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA-----QTYPNVTFGWVNVKDVANAHIQ 242 (281)
Q Consensus 168 ~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~~D~a~~i~~ 242 (281)
+.+|.++|.++++ .|++++++||+.+||+......... ...+. -..++..++|++++|+|++++.
T Consensus 131 ~~sK~~~e~~~~~----~gi~~~ilrp~~~~~~~~~~~~~~~------~~~g~~~~~~~~~~~~~~~~i~~~Dva~~~~~ 200 (299)
T 2wm3_A 131 FDGKGEVEEYFRD----IGVPMTSVRLPCYFENLLSHFLPQK------APDGKSYLLSLPTGDVPMDGMSVSDLGPVVLS 200 (299)
T ss_dssp HHHHHHHHHHHHH----HTCCEEEEECCEEGGGGGTTTCCEE------CTTSSSEEECCCCTTSCEEEECGGGHHHHHHH
T ss_pred hhHHHHHHHHHHH----CCCCEEEEeecHHhhhchhhcCCcc------cCCCCEEEEEecCCCCccceecHHHHHHHHHH
Confidence 9999999999864 5899999999999997532111000 01221 1236778899999999999999
Q ss_pred hhcCCC--CCccEEEecCCCCHHHHHHHHHHhCCC
Q 023515 243 AFEVPS--ANGRYCLVERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 243 ~~~~~~--~~g~~~~~~~~~t~~e~~~~i~~~~~~ 275 (281)
++.++. .+..|+++++.+|+.|+++.+.+.+|.
T Consensus 201 ~l~~~~~~~g~~~~~~g~~~s~~e~~~~~~~~~g~ 235 (299)
T 2wm3_A 201 LLKMPEKYVGQNIGLSTCRHTAEEYAALLTKHTRK 235 (299)
T ss_dssp HHHSHHHHTTCEEECCSEEECHHHHHHHHHHHHSS
T ss_pred HHcChhhhCCeEEEeeeccCCHHHHHHHHHHHHCC
Confidence 998753 244888888889999999999999875
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=220.58 Aligned_cols=240 Identities=16% Similarity=0.095 Sum_probs=170.6
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++|+|+||||+|+||++++++|+++|++|++++|+.++...+....... ...++.++++|++|.+++.++++
T Consensus 23 ~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 101 (302)
T 1w6u_A 23 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQ-TGNKVHAIQCDVRDPDMVQNTVSELIKV 101 (302)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH-HSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh-cCCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999999865443322221111 02468999999999998888776
Q ss_pred --CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC----CccEEEEeccceeeecCCCCCCCCeee
Q 023515 81 --GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP----SIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (281)
Q Consensus 81 --~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (281)
++|+||||||... ....+.++..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 102 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~~~--------- 172 (302)
T 1w6u_A 102 AGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSG--------- 172 (302)
T ss_dssp TCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHCCT---------
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcccccccCCC---------
Confidence 4699999999632 22334567899999999999999987642 357999999987765211
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCC
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (281)
....|+.+|.+.+.+++.++.+ .|++++++|||.++++..................+.+
T Consensus 173 -------------~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~p----- 234 (302)
T 1w6u_A 173 -------------FVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIP----- 234 (302)
T ss_dssp -------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSHHHHHHHTTCT-----
T ss_pred -------------CcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeccCCCcchhhhcccchhhHHHHHhcCC-----
Confidence 1245999999999999999887 6899999999999998432111111011122222221
Q ss_pred CccceeHHHHHHHHHHhhcCCCC--Cc-cEEEec-CCCCHHHHHHHHHHhC
Q 023515 227 TFGWVNVKDVANAHIQAFEVPSA--NG-RYCLVE-RVSHYSEIVNIIRELY 273 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~~--~g-~~~~~~-~~~t~~e~~~~i~~~~ 273 (281)
...+++++|+|+++++++..... .| .|++.+ ..+++.++++.+.+..
T Consensus 235 ~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~~~~~~~~~~~ 285 (302)
T 1w6u_A 235 CGRLGTVEELANLAAFLCSDYASWINGAVIKFDGGEEVLISGEFNDLRKVT 285 (302)
T ss_dssp TSSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTHHHHHHSTTGGGGGCC
T ss_pred cCCCCCHHHHHHHHHHHcCCcccccCCCEEEECCCeeeccCCccccchhhc
Confidence 23478999999999999975432 45 667764 4567777776665554
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=216.94 Aligned_cols=243 Identities=19% Similarity=0.136 Sum_probs=178.0
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccC-CCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDG-ASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
.+++|+++||||+|+||++++++|+++|++|++++|+.++.....+...... ...++.++++|++|++++.++++
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 87 (281)
T 3svt_A 8 SFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTA 87 (281)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999998765444333322211 12378999999999998888776
Q ss_pred ---CCcEeEEecccCC------CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCee
Q 023515 81 ---GCDGVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVV 148 (281)
Q Consensus 81 ---~~d~Vih~a~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (281)
++|++|||||... ....+.|+..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 88 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------- 159 (281)
T 3svt_A 88 WHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAASNTHR-------- 159 (281)
T ss_dssp HHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSCCT--------
T ss_pred HcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHHcCCCC--------
Confidence 6899999999622 22344567899999999999999998752 345899999987765221
Q ss_pred eecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCC
Q 023515 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (281)
Q Consensus 149 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (281)
....|+.||++.+.+++.++.++ |+++++++||.++++...... .............
T Consensus 160 --------------~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~-~~~~~~~~~~~~~----- 219 (281)
T 3svt_A 160 --------------WFGAYGVTKSAVDHLMQLAADELGASWVRVNSIRPGLIRTDLVAAIT-ESAELSSDYAMCT----- 219 (281)
T ss_dssp --------------TCTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHH-TCHHHHHHHHHHC-----
T ss_pred --------------CChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhcc-cCHHHHHHHHhcC-----
Confidence 12459999999999999998875 699999999999987632110 0112222222222
Q ss_pred CCccceeHHHHHHHHHHhhcCCCC--Cc-cEEEec-CCCC-HHHHHHHHHHhCCCC
Q 023515 226 VTFGWVNVKDVANAHIQAFEVPSA--NG-RYCLVE-RVSH-YSEIVNIIRELYPAF 276 (281)
Q Consensus 226 ~~~~~i~~~D~a~~i~~~~~~~~~--~g-~~~~~~-~~~t-~~e~~~~i~~~~~~~ 276 (281)
....+.+++|+|+++++++..... .| .+++.| ...+ ..++.+.+.+.++..
T Consensus 220 p~~r~~~~~dva~~~~~l~s~~~~~itG~~~~vdgG~~~~~~~~~~~~~~~~~~~~ 275 (281)
T 3svt_A 220 PLPRQGEVEDVANMAMFLLSDAASFVTGQVINVDGGQMLRRGPDFSAMLEPVFGRD 275 (281)
T ss_dssp SSSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGSCCCCCHHHHHHHHCTT
T ss_pred CCCCCCCHHHHHHHHHHHhCcccCCCCCCEEEeCCChhcccCCcchhccccccCCc
Confidence 234577999999999999986433 45 566654 3444 667888888877754
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-29 Score=207.35 Aligned_cols=220 Identities=15% Similarity=0.153 Sum_probs=164.3
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC-CcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN-DPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
+++|++|||||+|+||++++++|+++|++|++++|+.. ..+.+.+..... ..++.++++|++|.++++++++
T Consensus 2 l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 79 (246)
T 3osu_A 2 KMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAK--GVDSFAIQANVADADEVKAMIKEVVSQ 79 (246)
T ss_dssp CCSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999988642 333332222221 2478899999999999888876
Q ss_pred --CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 --GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 --~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|++|||||... ....+.|+..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 149 (246)
T 3osu_A 80 FGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNP---------- 149 (246)
T ss_dssp HSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCT----------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcCCCC----------
Confidence 7899999999643 22344567899999999999999995531 557999999988776321
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
....|+.||.+.+.+++.++.+ .|+++++++||.++++..... ..........+. ..
T Consensus 150 ------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~---~~~~~~~~~~~~-----p~ 209 (246)
T 3osu_A 150 ------------GQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDAL---SDELKEQMLTQI-----PL 209 (246)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCCSCS---CHHHHHHHHTTC-----TT
T ss_pred ------------CChHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECCCcCCccccc---CHHHHHHHHhcC-----CC
Confidence 1245999999999999999885 489999999999999875432 223333333322 23
Q ss_pred ccceeHHHHHHHHHHhhcCCCC--Cc-cEEEecC
Q 023515 228 FGWVNVKDVANAHIQAFEVPSA--NG-RYCLVER 258 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~~--~g-~~~~~~~ 258 (281)
..+.+++|+|+++++++..... .| .+++.|+
T Consensus 210 ~r~~~~~dva~~v~~l~s~~~~~itG~~i~vdgG 243 (246)
T 3osu_A 210 ARFGQDTDIANTVAFLASDKAKYITGQTIHVNGG 243 (246)
T ss_dssp CSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred CCCcCHHHHHHHHHHHhCccccCCCCCEEEeCCC
Confidence 4578999999999999986543 35 5565543
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=7.2e-29 Score=206.46 Aligned_cols=219 Identities=18% Similarity=0.083 Sum_probs=165.7
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++|+++||||+|+||++++++|+++|++|++++|+.++...+.... ..++.++++|++|.++++++++
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (271)
T 3tzq_B 8 ELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASV-----GRGAVHHVVDLTNEVSVRALIDFTIDT 82 (271)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHH-----CTTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh-----CCCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999887655443322 2468899999999999888876
Q ss_pred --CCcEeEEecccCC-------CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCee
Q 023515 81 --GCDGVCHTASPFY-------HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVV 148 (281)
Q Consensus 81 --~~d~Vih~a~~~~-------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (281)
++|++|||||... ....+.|+..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 83 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~-------- 154 (271)
T 3tzq_B 83 FGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAGGGAIVNISSATAHAAYD-------- 154 (271)
T ss_dssp HSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSBCS--------
T ss_pred cCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCHHHcCCCC--------
Confidence 7899999999742 12334567899999999999999995431 567999999987765221
Q ss_pred eecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCC
Q 023515 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (281)
Q Consensus 149 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (281)
....|+.||++.+.+++.++.+ +|+++++++||.+++|...... ............
T Consensus 155 --------------~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~--~~~~~~~~~~~~----- 213 (271)
T 3tzq_B 155 --------------MSTAYACTKAAIETLTRYVATQYGRHGVRCNAIAPGLVRTPRLEVGL--PQPIVDIFATHH----- 213 (271)
T ss_dssp --------------SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTC-----CHHHHHHHHTTS-----
T ss_pred --------------CChHHHHHHHHHHHHHHHHHHHHhhcCEEEEEEEeCCCcCccccccC--CHHHHHHHHhcC-----
Confidence 1245999999999999999887 5899999999999998754222 112222222221
Q ss_pred CCccceeHHHHHHHHHHhhcCCCC--Cc-cEEEecC
Q 023515 226 VTFGWVNVKDVANAHIQAFEVPSA--NG-RYCLVER 258 (281)
Q Consensus 226 ~~~~~i~~~D~a~~i~~~~~~~~~--~g-~~~~~~~ 258 (281)
....+.+++|+|+++++++..... .| .+++.|+
T Consensus 214 ~~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG 249 (271)
T 3tzq_B 214 LAGRIGEPHEIAELVCFLASDRAAFITGQVIAADSG 249 (271)
T ss_dssp TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCCCcCHHHHHHHHHHHhCcccCCcCCCEEEECCC
Confidence 123477999999999999986533 46 4555544
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.2e-30 Score=213.32 Aligned_cols=225 Identities=16% Similarity=0.086 Sum_probs=166.3
Q ss_pred hhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 4 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
|+.+++|++|||||+|+||++++++|+++|++|++++|+.++...+...... ...++.++++|++|+++++++++
T Consensus 3 m~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~~ 80 (280)
T 3tox_A 3 MSRLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAG--GGGEAAALAGDVGDEALHEALVELAV 80 (280)
T ss_dssp -CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTT--TTCCEEECCCCTTCHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh--cCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 4557799999999999999999999999999999999987654444333222 23578999999999998888776
Q ss_pred ----CCcEeEEecccCC------CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceee-ecCCCCCCCC
Q 023515 81 ----GCDGVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAV-LNTGKPRTPD 146 (281)
Q Consensus 81 ----~~d~Vih~a~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~-~~~~~~~~~~ 146 (281)
++|++|||||... ....+.|+..+++|+.|+.++++++.+.+ +.+++|++||..++ .+.+
T Consensus 81 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------ 154 (280)
T 3tox_A 81 RRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTAGFA------ 154 (280)
T ss_dssp HHHSCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCSBTTTBCCT------
T ss_pred HHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhCcCCCC------
Confidence 7899999999642 22345577899999999999999988752 45699999998765 2110
Q ss_pred eeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCC-CccHHHHHHHHhCCCC
Q 023515 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTL-NTSAAAVLSLIKGAQT 222 (281)
Q Consensus 147 ~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~-~~~~~~~~~~~~~~~~ 222 (281)
....|+.||.+.+.+++.++.++ |+++++|+||.|.+|...... ..............
T Consensus 155 ----------------~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~-- 216 (280)
T 3tox_A 155 ----------------GVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGLH-- 216 (280)
T ss_dssp ----------------TCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBSSTTSGGGSTTCCTHHHHHHHTTS--
T ss_pred ----------------CchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCCCCchhhhhccccCHHHHHHHhccC--
Confidence 12459999999999999998875 899999999999998643211 11112222222221
Q ss_pred CCCCCccceeHHHHHHHHHHhhcCCC--CCc-cEEEec
Q 023515 223 YPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (281)
Q Consensus 223 ~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~ 257 (281)
....+.+++|+|+++++++.... ..| .+++.|
T Consensus 217 ---p~~r~~~pedvA~~v~~L~s~~a~~itG~~i~vdG 251 (280)
T 3tox_A 217 ---ALKRIARPEEIAEAALYLASDGASFVTGAALLADG 251 (280)
T ss_dssp ---TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred ---ccCCCcCHHHHHHHHHHHhCccccCCcCcEEEECC
Confidence 13357899999999999998643 346 455544
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-29 Score=211.36 Aligned_cols=230 Identities=18% Similarity=0.150 Sum_probs=165.1
Q ss_pred chhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC---------cchhhhhhh-ccCCCCcEEEEEcCCCCc
Q 023515 3 SVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND---------PKKTRHLLA-LDGASERLQLFKANLLEE 72 (281)
Q Consensus 3 ~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~---------~~~~~~~~~-~~~~~~~~~~~~~D~~~~ 72 (281)
+|+.+++|++|||||+|+||++++++|+++|++|++++|++.. .+.+..... ......++.++++|++|+
T Consensus 4 ~m~~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 83 (281)
T 3s55_A 4 SMADFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDR 83 (281)
T ss_dssp --CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCH
T ss_pred cccccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCH
Confidence 4666789999999999999999999999999999999997432 122222111 111135789999999999
Q ss_pred CcHHHHhc-------CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeee
Q 023515 73 GSFDSIVD-------GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVL 137 (281)
Q Consensus 73 ~~~~~~~~-------~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~ 137 (281)
++++++++ ++|++|||||... +...+.|+..+++|+.++.++++++.+.+ +.++||++||..++.
T Consensus 84 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 163 (281)
T 3s55_A 84 AALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHS 163 (281)
T ss_dssp HHHHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGS
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhcC
Confidence 98888876 7899999999633 22345577899999999999999986632 457899999987765
Q ss_pred cCCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCC--------
Q 023515 138 NTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTL-------- 206 (281)
Q Consensus 138 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~-------- 206 (281)
+.+ ....|+.+|.+.+.+++.++.++ |+++++++||.|++|......
T Consensus 164 ~~~----------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~ 221 (281)
T 3s55_A 164 ANF----------------------AQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVFGTMRPD 221 (281)
T ss_dssp CCT----------------------TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSTTTSSHHHHHC----
T ss_pred CCC----------------------CCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccccchhhhcccccc
Confidence 221 12459999999999999999864 899999999999998754210
Q ss_pred --CccHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCCC--Cc-cEEEec
Q 023515 207 --NTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPSA--NG-RYCLVE 257 (281)
Q Consensus 207 --~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~~--~g-~~~~~~ 257 (281)
.............. ......|++++|+|+++++++..... .| .+++.|
T Consensus 222 ~~~~~~~~~~~~~~~~---~~~~~~~~~p~dvA~~v~~L~s~~~~~itG~~i~vdg 274 (281)
T 3s55_A 222 LEKPTLKDVESVFASL---HLQYAPFLKPEEVTRAVLFLVDEASSHITGTVLPIDA 274 (281)
T ss_dssp ---CCHHHHHHHHHHH---CSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred ccccchhHHHHHHHhh---hccCcCCCCHHHHHHHHHHHcCCcccCCCCCEEEECC
Confidence 00001111111110 12336689999999999999986543 46 555554
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=211.81 Aligned_cols=228 Identities=17% Similarity=0.173 Sum_probs=164.4
Q ss_pred hhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC----------Ccchhhhhhh-ccCCCCcEEEEEcCCCCc
Q 023515 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN----------DPKKTRHLLA-LDGASERLQLFKANLLEE 72 (281)
Q Consensus 4 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~----------~~~~~~~~~~-~~~~~~~~~~~~~D~~~~ 72 (281)
|..+++|+++||||+|+||++++++|+++|++|++++|+.. ..+.+..... ......++.++++|++|.
T Consensus 10 ~~~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 89 (280)
T 3pgx_A 10 AGSLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDD 89 (280)
T ss_dssp -CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCH
T ss_pred ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCH
Confidence 44567899999999999999999999999999999998532 1222222111 111235789999999999
Q ss_pred CcHHHHhc-------CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC----CccEEEEeccceee
Q 023515 73 GSFDSIVD-------GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP----SIKRVVLTSSMAAV 136 (281)
Q Consensus 73 ~~~~~~~~-------~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~~~v~~SS~~~~ 136 (281)
++++++++ ++|++|||||... ....+.|+..+++|+.++.++++++.+.+ ..++||++||..++
T Consensus 90 ~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~ 169 (280)
T 3pgx_A 90 AALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGL 169 (280)
T ss_dssp HHHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGT
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchhhc
Confidence 98888776 7899999999633 22345577899999999999999997642 24689999998776
Q ss_pred ecCCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHH
Q 023515 137 LNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAV 213 (281)
Q Consensus 137 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~ 213 (281)
.+.+ ....|+.||.+.+.+++.++.+ +|+++++++||.+++|...+ ...
T Consensus 170 ~~~~----------------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~------~~~ 221 (280)
T 3pgx_A 170 KATP----------------------GNGHYSASKHGLTALTNTLAIELGEYGIRVNSIHPYSVETPMIEP------EAM 221 (280)
T ss_dssp SCCT----------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCH------HHH
T ss_pred cCCC----------------------CchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccCcccch------hhh
Confidence 5221 1245999999999999999887 58999999999999987432 111
Q ss_pred HHHHhCC-------CCCCCCCccceeHHHHHHHHHHhhcCCC--CCc-cEEEecCC
Q 023515 214 LSLIKGA-------QTYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVERV 259 (281)
Q Consensus 214 ~~~~~~~-------~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~~~ 259 (281)
....... +..+.....+++++|+|+++++++.... ..| .+++.|+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~ 277 (280)
T 3pgx_A 222 MEIFARHPSFVHSFPPMPVQPNGFMTADEVADVVAWLAGDGSGTLTGTQIPVDKGA 277 (280)
T ss_dssp HHHHHHCGGGGGGSCCBTTBCSSCBCHHHHHHHHHHHHSGGGTTCSSCEEEESTTG
T ss_pred hhhhhcCchhhhhhhhcccCCCCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCc
Confidence 1111111 1122222348999999999999997654 346 45555543
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=5.9e-30 Score=209.77 Aligned_cols=218 Identities=19% Similarity=0.124 Sum_probs=161.8
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---CC
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---GC 82 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---~~ 82 (281)
.+++|+|+||||+|+||++++++|+++|++|++++|+.++...+... . .+++++.+|++|.++++++++ ++
T Consensus 4 ~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~---~---~~~~~~~~D~~~~~~~~~~~~~~~~i 77 (244)
T 1cyd_A 4 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKE---C---PGIEPVCVDLGDWDATEKALGGIGPV 77 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---S---TTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh---c---cCCCcEEecCCCHHHHHHHHHHcCCC
Confidence 35689999999999999999999999999999999976443322211 1 246778999999999999887 58
Q ss_pred cEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---C-ccEEEEeccceeeecCCCCCCCCeeeecCC
Q 023515 83 DGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---S-IKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (281)
Q Consensus 83 d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~-~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~ 153 (281)
|+||||||.... ...+.++..+++|+.++.++++++.+.+ + .++||++||..++.+.+
T Consensus 78 d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~------------- 144 (244)
T 1cyd_A 78 DLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFP------------- 144 (244)
T ss_dssp SEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCT-------------
T ss_pred CEEEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhcCCCC-------------
Confidence 999999996321 2234566899999999999999988752 3 57899999987654211
Q ss_pred CCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccc
Q 023515 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGW 230 (281)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (281)
....|+.+|.+.|.+++.++.+ .|++++++|||.++|+...... .....+.....+. ..++|
T Consensus 145 ---------~~~~Y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~-~~~~~~~~~~~~~-----~~~~~ 209 (244)
T 1cyd_A 145 ---------NLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVS-ADPEFARKLKERH-----PLRKF 209 (244)
T ss_dssp ---------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHT-CCHHHHHHHHHHS-----TTSSC
T ss_pred ---------CcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCccccccc-cCHHHHHHHHhcC-----CccCC
Confidence 1245999999999999999877 4899999999999997532111 1122233333332 24679
Q ss_pred eeHHHHHHHHHHhhcCCCC--Cc-cEEEec
Q 023515 231 VNVKDVANAHIQAFEVPSA--NG-RYCLVE 257 (281)
Q Consensus 231 i~~~D~a~~i~~~~~~~~~--~g-~~~~~~ 257 (281)
++++|+|+++++++..+.. .| .+++.+
T Consensus 210 ~~~~dva~~~~~l~~~~~~~~~G~~~~v~g 239 (244)
T 1cyd_A 210 AEVEDVVNSILFLLSDRSASTSGGGILVDA 239 (244)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSSEEEEST
T ss_pred CCHHHHHHHHHHHhCchhhcccCCEEEECC
Confidence 9999999999999986532 45 445544
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-29 Score=207.56 Aligned_cols=223 Identities=13% Similarity=0.069 Sum_probs=162.5
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++|++|||||+|+||++++++|+++|++|++++|+.++.+.+...... ...++.++++|++|+++++++++
T Consensus 3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (257)
T 3imf_A 3 AMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQ--FPGQILTVQMDVRNTDDIQKMIEQIDEK 80 (257)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC--STTCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999999987655444333222 23578999999999998888776
Q ss_pred --CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC----CccEEEEeccceeeecCCCCCCCCeee
Q 023515 81 --GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP----SIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (281)
Q Consensus 81 --~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (281)
++|++|||||... ....+.|+..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 81 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------- 151 (257)
T 3imf_A 81 FGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVATYAWDAGP--------- 151 (257)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGGSCCT---------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECchhhccCCC---------
Confidence 7899999999532 23345577899999999999999996532 357899999987764211
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh----cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCC
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE----KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (281)
....|+.||.+.+.+++.++.+ .|+++++|+||.+.++....................
T Consensus 152 -------------~~~~Y~asKaa~~~l~~~la~e~~~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~----- 213 (257)
T 3imf_A 152 -------------GVIHSAAAKAGVLAMTKTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWISEEMAKRTIQSV----- 213 (257)
T ss_dssp -------------TCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCBSSCCCC-------CCSHHHHTTS-----
T ss_pred -------------CcHHHHHHHHHHHHHHHHHHHHhccccCeEEEEEEECCCcCCcchhhcccCHHHHHHHHhcC-----
Confidence 1245999999999999988864 389999999999998864321110000111111111
Q ss_pred CCccceeHHHHHHHHHHhhcCCC--CCcc-EEEec
Q 023515 226 VTFGWVNVKDVANAHIQAFEVPS--ANGR-YCLVE 257 (281)
Q Consensus 226 ~~~~~i~~~D~a~~i~~~~~~~~--~~g~-~~~~~ 257 (281)
....+.+++|+|+++++++.... ..|. +++.|
T Consensus 214 p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdG 248 (257)
T 3imf_A 214 PLGRLGTPEEIAGLAYYLCSDEAAYINGTCMTMDG 248 (257)
T ss_dssp TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCCCCcCHHHHHHHHHHHcCchhcCccCCEEEECC
Confidence 12347899999999999998654 2564 45544
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-29 Score=208.76 Aligned_cols=221 Identities=13% Similarity=0.109 Sum_probs=147.1
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHh------
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV------ 79 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~------ 79 (281)
.+++|+||||||+|+||++++++|+++|++|++++|+.++...+....... ..++.++.+|+++.+++++++
T Consensus 11 ~l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 88 (266)
T 1xq1_A 11 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKK--GFQVTGSVCDASLRPEREKLMQTVSSM 88 (266)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeeEEEECCCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999999765433322221111 246889999999998888776
Q ss_pred --cCCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeee
Q 023515 80 --DGCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (281)
Q Consensus 80 --~~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (281)
.++|+||||||.... ...+.++..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 89 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~--------- 159 (266)
T 1xq1_A 89 FGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSAS--------- 159 (266)
T ss_dssp HTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC------------------
T ss_pred hCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhccCCC---------
Confidence 468999999996322 2234566889999999999999995421 567999999987765211
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCC
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (281)
....|+.+|.+.+.+++.++.++ |++++++|||.++||...... ............ .
T Consensus 160 -------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~--~~~~~~~~~~~~-----~ 219 (266)
T 1xq1_A 160 -------------VGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVY--DDEFKKVVISRK-----P 219 (266)
T ss_dssp --------------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC----------------------------
T ss_pred -------------CCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEeeCCCccchhhhhc--CHHHHHHHHhcC-----C
Confidence 12459999999999999998774 899999999999998643211 001111111111 1
Q ss_pred CccceeHHHHHHHHHHhhcCCC--CCc-cEEEec
Q 023515 227 TFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~ 257 (281)
...+++++|+|+++++++.... ..| .+++.+
T Consensus 220 ~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~g 253 (266)
T 1xq1_A 220 LGRFGEPEEVSSLVAFLCMPAASYITGQTICVDG 253 (266)
T ss_dssp ----CCGGGGHHHHHHHTSGGGTTCCSCEEECCC
T ss_pred CCCCcCHHHHHHHHHHHcCccccCccCcEEEEcC
Confidence 1247899999999999997542 245 555554
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-29 Score=208.89 Aligned_cols=222 Identities=16% Similarity=0.147 Sum_probs=152.1
Q ss_pred hccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC-CcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN-DPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 5 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
..+++|++|||||+|+||++++++|+++|++|++++|+.. ....+....... ..++.++++|++|+++++++++
T Consensus 25 ~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~ 102 (280)
T 4da9_A 25 TQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGL--GARVIFLRADLADLSSHQATVDAVV 102 (280)
T ss_dssp SCCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHT--TCCEEEEECCTTSGGGHHHHHHHHH
T ss_pred hccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHH
Confidence 3456889999999999999999999999999999997543 222222222211 2578999999999999888876
Q ss_pred ----CCcEeEEecccC--C-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---C---ccEEEEeccceeeecCCCCC
Q 023515 81 ----GCDGVCHTASPF--Y-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---S---IKRVVLTSSMAAVLNTGKPR 143 (281)
Q Consensus 81 ----~~d~Vih~a~~~--~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~---~~~~v~~SS~~~~~~~~~~~ 143 (281)
++|+||||||.. . ....+.|+..+++|+.++.++++++.+.+ + .++||++||..++.+.+
T Consensus 103 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~~--- 179 (280)
T 4da9_A 103 AEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVMTSP--- 179 (280)
T ss_dssp HHHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC----------
T ss_pred HHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhccCCC---
Confidence 789999999862 1 12345577899999999999999998753 1 45899999987765221
Q ss_pred CCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC
Q 023515 144 TPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA 220 (281)
Q Consensus 144 ~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~ 220 (281)
....|+.||.+.+.+++.++.+ .|+++++++||.|.++........ .......+.
T Consensus 180 -------------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~---~~~~~~~~~ 237 (280)
T 4da9_A 180 -------------------ERLDYCMSKAGLAAFSQGLALRLAETGIAVFEVRPGIIRSDMTAAVSGK---YDGLIESGL 237 (280)
T ss_dssp -------------------CCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC---------------------
T ss_pred -------------------CccHHHHHHHHHHHHHHHHHHHHHHhCcEEEEEeecCCcCCchhhcchh---HHHHHhhcC
Confidence 1245999999999999999887 589999999999998864321110 001111101
Q ss_pred CCCCCCCccceeHHHHHHHHHHhhcCCC--CCccEEEec
Q 023515 221 QTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVE 257 (281)
Q Consensus 221 ~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~ 257 (281)
.....+.+++|+|+++++++.... ..|..+..+
T Consensus 238 ----~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vd 272 (280)
T 4da9_A 238 ----VPMRRWGEPEDIGNIVAGLAGGQFGFATGSVIQAD 272 (280)
T ss_dssp --------CCBCHHHHHHHHHHHHTSTTGGGTTCEEEES
T ss_pred ----CCcCCcCCHHHHHHHHHHHhCccccCCCCCEEEEC
Confidence 112347899999999999998654 356444333
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-29 Score=212.45 Aligned_cols=222 Identities=19% Similarity=0.179 Sum_probs=154.9
Q ss_pred hhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 4 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
|+.+++|+||||||+|+||++++++|+++|++|++++|+.++.+.+...........++.++++|++|.++++++++
T Consensus 3 m~~l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 82 (319)
T 3ioy_A 3 LKDFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVE 82 (319)
T ss_dssp CCCCTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 44567899999999999999999999999999999999876655544433222222378999999999998888776
Q ss_pred ----CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---------CccEEEEeccceeeecCCCC
Q 023515 81 ----GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---------SIKRVVLTSSMAAVLNTGKP 142 (281)
Q Consensus 81 ----~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---------~~~~~v~~SS~~~~~~~~~~ 142 (281)
++|+||||||... ....+.++..+++|+.|+.++++++.+.+ +.++||++||..++.+.+
T Consensus 83 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~~~~~-- 160 (319)
T 3ioy_A 83 ARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAAG-- 160 (319)
T ss_dssp HHTCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGTCCCS--
T ss_pred HhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecccccccCCC--
Confidence 6799999999632 22335567899999999999999998763 245799999988765221
Q ss_pred CCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhC
Q 023515 143 RTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKG 219 (281)
Q Consensus 143 ~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~ 219 (281)
....|+.||.+.+.+++.++.++ |+++++|+||.|.++....... ....+......
T Consensus 161 --------------------~~~~Y~aSKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~-~~~~~~~~~~~ 219 (319)
T 3ioy_A 161 --------------------SPGIYNTTKFAVRGLSESLHYSLLKYEIGVSVLCPGLVKSYIYASDDI-RPDALKGEVKP 219 (319)
T ss_dssp --------------------SSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCBC---------------------
T ss_pred --------------------CCHHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEcCeEccCccccccc-Cchhhcccccc
Confidence 12459999998888888877653 8999999999999876432111 00111110000
Q ss_pred C-----CCCCCCCccceeHHHHHHHHHHhhcCCC
Q 023515 220 A-----QTYPNVTFGWVNVKDVANAHIQAFEVPS 248 (281)
Q Consensus 220 ~-----~~~~~~~~~~i~~~D~a~~i~~~~~~~~ 248 (281)
. ..........++++|+|+.++.+++++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~pe~vA~~~~~al~~~~ 253 (319)
T 3ioy_A 220 VDKTAVERLAGVHEFGMEPDVIGARVIEAMKANR 253 (319)
T ss_dssp ---------CCGGGSSBCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHcCC
Confidence 0 0011111123899999999999999765
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-29 Score=209.27 Aligned_cols=231 Identities=13% Similarity=0.128 Sum_probs=159.2
Q ss_pred hhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC-CcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--
Q 023515 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN-DPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-- 80 (281)
Q Consensus 4 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-- 80 (281)
|.++++|++|||||+|+||++++++|+++|++|++++|+.. ....+....... ...++.++++|++|.++++++++
T Consensus 20 ~~~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~d~~~v~~~~~~~ 98 (281)
T 3v2h_A 20 FQSMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGL-SSGTVLHHPADMTKPSEIADMMAMV 98 (281)
T ss_dssp --CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTT-CSSCEEEECCCTTCHHHHHHHHHHH
T ss_pred hhccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhc-cCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 34567899999999999999999999999999999998542 222322222111 12578999999999998888776
Q ss_pred -----CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCe
Q 023515 81 -----GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDV 147 (281)
Q Consensus 81 -----~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (281)
++|+||||||.... ...+.|+..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 99 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~------- 171 (281)
T 3v2h_A 99 ADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLVASP------- 171 (281)
T ss_dssp HHHTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT-------
T ss_pred HHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCcccccCCC-------
Confidence 78999999996332 2345567899999999999999986542 457899999987765221
Q ss_pred eeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHH----HHHHhCC
Q 023515 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAV----LSLIKGA 220 (281)
Q Consensus 148 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~----~~~~~~~ 220 (281)
....|+.||.+.+.+++.++.++ |+++++++||.|++|............. .......
T Consensus 172 ---------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (281)
T 3v2h_A 172 ---------------FKSAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLVEKQIPDQARTRGITEEQVINEV 236 (281)
T ss_dssp ---------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-------------------------
T ss_pred ---------------CchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEECCCCcCcchhhhcchhhhhcCCCHHHHHHHH
Confidence 12459999999999999998874 8999999999999986432211100000 0000000
Q ss_pred CCCCCCCccceeHHHHHHHHHHhhcCCC--CCc-cEEEec
Q 023515 221 QTYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (281)
Q Consensus 221 ~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~ 257 (281)
...+.....+++++|+|+++++++.... ..| .+++.|
T Consensus 237 ~~~~~p~~r~~~~edvA~~v~~L~s~~a~~itG~~i~vdG 276 (281)
T 3v2h_A 237 MLKGQPTKKFITVEQVASLALYLAGDDAAQITGTHVSMDG 276 (281)
T ss_dssp ---CCTTCSCBCHHHHHHHHHHHHSSGGGGCCSCEEEEST
T ss_pred HHhcCCCCCccCHHHHHHHHHHHcCCCcCCCCCcEEEECC
Confidence 0012334568999999999999998654 246 445543
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-29 Score=206.66 Aligned_cols=229 Identities=15% Similarity=0.105 Sum_probs=163.4
Q ss_pred CcchhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHh-
Q 023515 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV- 79 (281)
Q Consensus 1 ~~~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~- 79 (281)
|+..+.+++|+++||||+|+||++++++|+++|++|++++|+.++.+.+....... ..++.++++|++|++++++++
T Consensus 1 m~~~~~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~ 78 (260)
T 2ae2_A 1 MAGRWNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSK--GFKVEASVCDLSSRSERQELMN 78 (260)
T ss_dssp -CCTTCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHH
T ss_pred CCCccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHH
Confidence 44433467899999999999999999999999999999999865443322222111 246889999999998888877
Q ss_pred -------cCCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhC---CCccEEEEeccceeeecCCCCCC
Q 023515 80 -------DGCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRT 144 (281)
Q Consensus 80 -------~~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~ 144 (281)
.++|+||||||.... ...+.|+..+++|+.++.++++++.+. .+.++||++||..++.+.+
T Consensus 79 ~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---- 154 (260)
T 2ae2_A 79 TVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAVP---- 154 (260)
T ss_dssp HHHHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTSCCT----
T ss_pred HHHHHcCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCCC----
Confidence 469999999996322 233456789999999999999999653 1567999999987654211
Q ss_pred CCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCc--cHHHHHHHHhC
Q 023515 145 PDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNT--SAAAVLSLIKG 219 (281)
Q Consensus 145 ~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~--~~~~~~~~~~~ 219 (281)
....|+.||.+.+.+++.++.++ |+++++++||.+.++........ ....+......
T Consensus 155 ------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~ 216 (260)
T 2ae2_A 155 ------------------YEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDR 216 (260)
T ss_dssp ------------------TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHT
T ss_pred ------------------CcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCCCCCcchhhhccChhhHHHHHHHHhc
Confidence 12459999999999999998875 89999999999988742110000 00111122222
Q ss_pred CCCCCCCCccceeHHHHHHHHHHhhcCCC--CCc-cEEEecC
Q 023515 220 AQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVER 258 (281)
Q Consensus 220 ~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~~ 258 (281)
. ....+++++|+|+++++++.... ..| .+++.|+
T Consensus 217 ~-----~~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG 253 (260)
T 2ae2_A 217 C-----ALRRMGEPKELAAMVAFLCFPAASYVTGQIIYVDGG 253 (260)
T ss_dssp S-----TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred C-----CCCCCCCHHHHHHHHHHHcCccccCCCCCEEEECCC
Confidence 1 12458899999999999997543 246 4555443
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-29 Score=211.30 Aligned_cols=212 Identities=15% Similarity=0.099 Sum_probs=149.9
Q ss_pred chhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--
Q 023515 3 SVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-- 80 (281)
Q Consensus 3 ~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-- 80 (281)
+|+.+++|++|||||+|+||++++++|+++|++|++++|+.++...+.... ..++.++++|++|+++++++++
T Consensus 22 ~m~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~~~ 96 (272)
T 4dyv_A 22 SMSKTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEI-----GDDALCVPTDVTDPDSVRALFTAT 96 (272)
T ss_dssp ------CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----TSCCEEEECCTTSHHHHHHHHHHH
T ss_pred hhcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----CCCeEEEEecCCCHHHHHHHHHHH
Confidence 355567899999999999999999999999999999999865444333222 1468899999999999888876
Q ss_pred -----CCcEeEEecccCCC------CCCCccchhhhhHHHHHHHHHHHhhhCC---C--ccEEEEeccceeeecCCCCCC
Q 023515 81 -----GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFP---S--IKRVVLTSSMAAVLNTGKPRT 144 (281)
Q Consensus 81 -----~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~--~~~~v~~SS~~~~~~~~~~~~ 144 (281)
++|+||||||.... ...+.|+..+++|+.++.++++++.+.+ + .++||++||..++.+.+
T Consensus 97 ~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~~---- 172 (272)
T 4dyv_A 97 VEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATSPRP---- 172 (272)
T ss_dssp HHHHSCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTSCCT----
T ss_pred HHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcCCCC----
Confidence 79999999996322 2344567899999999999999988753 1 46899999987765211
Q ss_pred CCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCC
Q 023515 145 PDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ 221 (281)
Q Consensus 145 ~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~ 221 (281)
....|+.||.+.+.+++.++.+ .|+++++++||.|.++........ ......
T Consensus 173 ------------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~----~~~~~~--- 227 (272)
T 4dyv_A 173 ------------------YSAPYTATKHAITGLTKSTSLDGRVHDIACGQIDIGNADTPMAQKMKAG----VPQADL--- 227 (272)
T ss_dssp ------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEEECC-----------------------
T ss_pred ------------------CchHHHHHHHHHHHHHHHHHHHhCccCEEEEEEEECcccChhhhhhccc----chhhhh---
Confidence 1245999999999999999876 489999999999998753321110 000000
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCCCCC
Q 023515 222 TYPNVTFGWVNVKDVANAHIQAFEVPSAN 250 (281)
Q Consensus 222 ~~~~~~~~~i~~~D~a~~i~~~~~~~~~~ 250 (281)
......+++++|+|+++++++.++...
T Consensus 228 --~~~~~~~~~pedvA~~v~fL~s~~~~~ 254 (272)
T 4dyv_A 228 --SIKVEPVMDVAHVASAVVYMASLPLDA 254 (272)
T ss_dssp ----------CHHHHHHHHHHHHHSCTTS
T ss_pred --cccccCCCCHHHHHHHHHHHhCCCCcC
Confidence 011234789999999999999987653
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.9e-29 Score=208.54 Aligned_cols=223 Identities=19% Similarity=0.180 Sum_probs=164.8
Q ss_pred hhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 4 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
|..+++|+||||||+|+||++++++|+++|++|++++|+.++...+........ ..++.++++|++|.++++++++
T Consensus 36 m~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~ 114 (293)
T 3rih_A 36 MFDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELG-AGNVIGVRLDVSDPGSCADAARTVV 114 (293)
T ss_dssp TTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSS-SSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhC-CCcEEEEEEeCCCHHHHHHHHHHHH
Confidence 445678999999999999999999999999999999998776555444332221 1478999999999988887765
Q ss_pred ----CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceee-ecCCCCCCCCe
Q 023515 81 ----GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAV-LNTGKPRTPDV 147 (281)
Q Consensus 81 ----~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~-~~~~~~~~~~~ 147 (281)
++|+||||||.... ...+.|+..+++|+.|+.++++++.+.+ +.++||++||..+. .+.+
T Consensus 115 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iV~isS~~~~~~~~~------- 187 (293)
T 3rih_A 115 DAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGRGRVILTSSITGPVTGYP------- 187 (293)
T ss_dssp HHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSSCEEEEECCSBTTTBBCT-------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEeChhhccCCCC-------
Confidence 67999999996332 2344567899999999999999996421 45799999998664 3211
Q ss_pred eeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCC
Q 023515 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP 224 (281)
Q Consensus 148 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (281)
....|+.||.+.+.+++.++.+ .|+++++++||.|++|..... ............+
T Consensus 188 ---------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~---~~~~~~~~~~~~p--- 246 (293)
T 3rih_A 188 ---------------GWSHYGASKAAQLGFMRTAAIELAPRGVTVNAILPGNILTEGLVDM---GEEYISGMARSIP--- 246 (293)
T ss_dssp ---------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHT---CHHHHHHHHTTST---
T ss_pred ---------------CCHHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCCcCcchhhc---cHHHHHHHHhcCC---
Confidence 1245999999999999999887 489999999999998753211 1122222333221
Q ss_pred CCCccceeHHHHHHHHHHhhcCCC--CCc-cEEEec
Q 023515 225 NVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (281)
Q Consensus 225 ~~~~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~ 257 (281)
...+..++|+|+++++++.... ..| .+++.|
T Consensus 247 --~~r~~~p~dvA~~v~fL~s~~a~~itG~~i~vdG 280 (293)
T 3rih_A 247 --MGMLGSPVDIGHLAAFLATDEAGYITGQAIVVDG 280 (293)
T ss_dssp --TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred --CCCCCCHHHHHHHHHHHhCccccCCCCCEEEECC
Confidence 2336789999999999997543 346 445544
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.3e-29 Score=204.94 Aligned_cols=221 Identities=15% Similarity=0.081 Sum_probs=162.6
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEE-EcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKAS-VRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
+++|++|||||+|+||++++++|+++|++|+++ +|+.+....+...... ...++.++++|++|.++++++++
T Consensus 2 ~~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (258)
T 3oid_A 2 EQNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEK--LGVKVLVVKANVGQPAKIKEMFQQIDET 79 (258)
T ss_dssp -CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHT--TTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh--cCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 358999999999999999999999999999997 6665444333332222 12578999999999998888775
Q ss_pred --CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 --GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 --~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|++|||||... ....+.|+..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~---------- 149 (258)
T 3oid_A 80 FGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIRYLE---------- 149 (258)
T ss_dssp HSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEEEGGGTSBCT----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhCCCCC----------
Confidence 5799999998522 22344567889999999999999997642 457999999987764211
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
....|+.||++.+.+++.++.++ |+++++++||.+.++....... ............ ..
T Consensus 150 ------------~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~-~~~~~~~~~~~~-----p~ 211 (258)
T 3oid_A 150 ------------NYTTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDTDALKHFPN-REDLLEDARQNT-----PA 211 (258)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECCBCSGGGGGCTT-HHHHHHHHHHHC-----TT
T ss_pred ------------CcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcChhhhhccc-CHHHHHHHHhcC-----CC
Confidence 12459999999999999999875 8999999999999886432211 112223232222 13
Q ss_pred ccceeHHHHHHHHHHhhcCCCC--Cc-cEEEec
Q 023515 228 FGWVNVKDVANAHIQAFEVPSA--NG-RYCLVE 257 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~~--~g-~~~~~~ 257 (281)
..+.+++|+|+++++++..... .| .+++.|
T Consensus 212 ~r~~~~~dva~~v~~L~s~~~~~itG~~i~vdG 244 (258)
T 3oid_A 212 GRMVEIKDMVDTVEFLVSSKADMIRGQTIIVDG 244 (258)
T ss_dssp SSCBCHHHHHHHHHHHTSSTTTTCCSCEEEEST
T ss_pred CCCcCHHHHHHHHHHHhCcccCCccCCEEEECC
Confidence 4578999999999999986543 46 555544
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-29 Score=206.24 Aligned_cols=219 Identities=18% Similarity=0.123 Sum_probs=161.1
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---CC
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---GC 82 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---~~ 82 (281)
.+++|+|+||||+|+||++++++|+++|++|++++|+.++.+.+.... .++.++++|++|++++.++++ ++
T Consensus 4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~~i 77 (244)
T 3d3w_A 4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC------PGIEPVCVDLGDWEATERALGSVGPV 77 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred ccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc------CCCCEEEEeCCCHHHHHHHHHHcCCC
Confidence 367899999999999999999999999999999999764333222111 245778999999999999886 58
Q ss_pred cEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---C-ccEEEEeccceeeecCCCCCCCCeeeecCC
Q 023515 83 DGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---S-IKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (281)
Q Consensus 83 d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~-~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~ 153 (281)
|+||||||.... ...+.++..+++|+.++.++++++.+.+ + .++||++||..++.+.+
T Consensus 78 d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~------------- 144 (244)
T 3d3w_A 78 DLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVT------------- 144 (244)
T ss_dssp CEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCT-------------
T ss_pred CEEEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhccCCC-------------
Confidence 999999986321 1234567899999999999999998742 3 57899999987654110
Q ss_pred CCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccc
Q 023515 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGW 230 (281)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (281)
....|+.||.+.|.+++.++.+ .|++++++|||.++++....... ............ ....+
T Consensus 145 ---------~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~~-~~~~~~~~~~~~-----~~~~~ 209 (244)
T 3d3w_A 145 ---------NHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWS-DPHKAKTMLNRI-----PLGKF 209 (244)
T ss_dssp ---------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTTTHHHHSC-STTHHHHHHHTC-----TTCSC
T ss_pred ---------CCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccccccchhhhcc-ChHHHHHHHhhC-----CCCCC
Confidence 1245999999999999998876 48999999999999985321110 001122222322 23468
Q ss_pred eeHHHHHHHHHHhhcCCC--CCc-cEEEecC
Q 023515 231 VNVKDVANAHIQAFEVPS--ANG-RYCLVER 258 (281)
Q Consensus 231 i~~~D~a~~i~~~~~~~~--~~g-~~~~~~~ 258 (281)
++++|+|+++++++.+.. ..| .|++.++
T Consensus 210 ~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 240 (244)
T 3d3w_A 210 AEVEHVVNAILFLLSDRSGMTTGSTLPVEGG 240 (244)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cCHHHHHHHHHHHcCccccCCCCCEEEECCC
Confidence 999999999999998643 245 5666543
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-29 Score=207.49 Aligned_cols=223 Identities=14% Similarity=0.063 Sum_probs=165.8
Q ss_pred hccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 5 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
+.+++|+++||||+|+||++++++|+++|++|++++|+.++.+.+....... ..++.++++|++|.++++++++
T Consensus 8 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~ 85 (256)
T 3gaf_A 8 FHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQA--GGKAIGLECNVTDEQHREAVIKAALD 85 (256)
T ss_dssp TCCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 3467899999999999999999999999999999999876554443333222 2578999999999998888776
Q ss_pred ---CCcEeEEecccCCC----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 ---GCDGVCHTASPFYH----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 ---~~d~Vih~a~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|++|||||.... ...+.|+..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 86 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 155 (256)
T 3gaf_A 86 QFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGENTNV---------- 155 (256)
T ss_dssp HHSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTCCCT----------
T ss_pred HcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHHcCCCC----------
Confidence 78999999996332 2334577899999999999999987642 457999999987764211
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
....|+.||++.+.+++.++.++ |+++++++||.+.++...... ............ ..
T Consensus 156 ------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~--~~~~~~~~~~~~-----p~ 216 (256)
T 3gaf_A 156 ------------RMASYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTDALATVL--TPEIERAMLKHT-----PL 216 (256)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHC--CHHHHHHHHTTC-----TT
T ss_pred ------------CchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEEccccCchhhhcc--CHHHHHHHHhcC-----CC
Confidence 12459999999999999998874 899999999999987422110 112222222222 23
Q ss_pred ccceeHHHHHHHHHHhhcCCC--CCc-cEEEecC
Q 023515 228 FGWVNVKDVANAHIQAFEVPS--ANG-RYCLVER 258 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~~ 258 (281)
..+.+++|+|+++++++.... ..| .+++.|+
T Consensus 217 ~r~~~~~dva~~~~~L~s~~~~~itG~~i~vdgG 250 (256)
T 3gaf_A 217 GRLGEAQDIANAALFLCSPAAAWISGQVLTVSGG 250 (256)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCCCHHHHHHHHHHHcCCcccCccCCEEEECCC
Confidence 457899999999999997543 246 5566543
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.4e-29 Score=204.92 Aligned_cols=223 Identities=16% Similarity=0.100 Sum_probs=164.5
Q ss_pred hhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 4 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
|..+++|+++||||+|+||++++++|+++|++|++++|+.++.+.+.+.. ..++.++++|++|.++++++++
T Consensus 3 m~~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~ 77 (255)
T 4eso_A 3 MGNYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF-----GPRVHALRSDIADLNEIAVLGAAAG 77 (255)
T ss_dssp -CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----GGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCcceEEEccCCCHHHHHHHHHHHH
Confidence 45577899999999999999999999999999999999865544433221 2468999999999988887765
Q ss_pred ----CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 ----GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 ----~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|++|||||... ....+.|+..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 78 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 147 (255)
T 4eso_A 78 QTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEGGHP---------- 147 (255)
T ss_dssp HHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGSSBCT----------
T ss_pred HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhcCCCC----------
Confidence 7899999998633 22345577899999999999999999863 245899999987765221
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCcc--HHHHHHHHhCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTS--AAAVLSLIKGAQTYPN 225 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~--~~~~~~~~~~~~~~~~ 225 (281)
....|+.||.+.+.+++.++.++ |+++++++||.+.+|......... ...+........
T Consensus 148 ------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~---- 211 (255)
T 4eso_A 148 ------------GMSVYSASKAALVSFASVLAAELLPRGIRVNSVSPGFIDTPTKGVAGITEAERAEFKTLGDNIT---- 211 (255)
T ss_dssp ------------TBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEEECSBCCSSTTCTTSCHHHHHHHHHHHHHHS----
T ss_pred ------------CchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEecCcccCcccccccCChhhHHHHHHHHhccC----
Confidence 12459999999999999999875 899999999999998643221111 111111111111
Q ss_pred CCccceeHHHHHHHHHHhhcCC-CCCc-cEEEec
Q 023515 226 VTFGWVNVKDVANAHIQAFEVP-SANG-RYCLVE 257 (281)
Q Consensus 226 ~~~~~i~~~D~a~~i~~~~~~~-~~~g-~~~~~~ 257 (281)
....+.+++|+|+++++++... ...| .+++.|
T Consensus 212 p~~r~~~pedvA~~v~~L~s~~~~itG~~i~vdG 245 (255)
T 4eso_A 212 PMKRNGTADEVARAVLFLAFEATFTTGAKLAVDG 245 (255)
T ss_dssp TTSSCBCHHHHHHHHHHHHHTCTTCCSCEEEEST
T ss_pred CCCCCcCHHHHHHHHHHHcCcCcCccCCEEEECC
Confidence 1234779999999999998752 2256 455543
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-29 Score=210.97 Aligned_cols=223 Identities=15% Similarity=0.098 Sum_probs=165.7
Q ss_pred hccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 5 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
+.+++|++|||||+|+||++++++|+++|++|++++|+.+..+.+..+.... ..++.++++|++|.++++++++
T Consensus 28 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~v~~~~~~~~~ 105 (276)
T 3r1i_A 28 FDLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGV--GGKALPIRCDVTQPDQVRGMLDQMTG 105 (276)
T ss_dssp GCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT--TCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 3467899999999999999999999999999999999876655544433222 2478899999999999888876
Q ss_pred ---CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---C-ccEEEEeccceeeecCCCCCCCCee
Q 023515 81 ---GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---S-IKRVVLTSSMAAVLNTGKPRTPDVV 148 (281)
Q Consensus 81 ---~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~-~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (281)
++|++|||||.... ...+.|+..+++|+.++.++++++.+.+ + ..++|++||..++.+...+
T Consensus 106 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~~~~~~~~~------ 179 (276)
T 3r1i_A 106 ELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHIINIPQ------ 179 (276)
T ss_dssp HHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCCSS------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchHhcccCCCC------
Confidence 78999999996432 2344567888999999999999998752 1 3689999998765421100
Q ss_pred eecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCC
Q 023515 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (281)
Q Consensus 149 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (281)
....|+.||.+.+.+++.++.+ .|+++++++||.|.++...... ..........
T Consensus 180 --------------~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~----~~~~~~~~~~----- 236 (276)
T 3r1i_A 180 --------------QVSHYCTSKAAVVHLTKAMAVELAPHQIRVNSVSPGYIRTELVEPLA----DYHALWEPKI----- 236 (276)
T ss_dssp --------------CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTTGGGG----GGHHHHGGGS-----
T ss_pred --------------CcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCccccch----HHHHHHHhcC-----
Confidence 1245999999999999999887 4899999999999988643211 1111111211
Q ss_pred CCccceeHHHHHHHHHHhhcCCC--CCcc-EEEecC
Q 023515 226 VTFGWVNVKDVANAHIQAFEVPS--ANGR-YCLVER 258 (281)
Q Consensus 226 ~~~~~i~~~D~a~~i~~~~~~~~--~~g~-~~~~~~ 258 (281)
....+.+++|+|+++++++.... ..|. +++.|+
T Consensus 237 p~~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG 272 (276)
T 3r1i_A 237 PLGRMGRPEELTGLYLYLASAASSYMTGSDIVIDGG 272 (276)
T ss_dssp TTSSCBCGGGSHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCCCcCHHHHHHHHHHHcCccccCccCcEEEECcC
Confidence 12347899999999999998643 2564 444443
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-29 Score=207.34 Aligned_cols=221 Identities=17% Similarity=0.076 Sum_probs=161.0
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++|+++||||+|+||++++++|+++|++|++++|+.++.+.+....... ..++.++++|++|.++++++++
T Consensus 12 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 89 (260)
T 2zat_A 12 LENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGE--GLSVTGTVCHVGKAEDRERLVAMAVNLH 89 (260)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 56789999999999999999999999999999999865443322222111 2468899999999988888776
Q ss_pred -CCcEeEEecccCC------CCCCCccchhhhhHHHHHHHHHHHhhhC---CCccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 -GCDGVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 -~~d~Vih~a~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|+||||||... +...+.|+..+++|+.++.++++++.+. .+.++||++||..++.+.+
T Consensus 90 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 159 (260)
T 2zat_A 90 GGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPFP---------- 159 (260)
T ss_dssp SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCCT----------
T ss_pred CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEechhhcCCCC----------
Confidence 7999999998632 1233456789999999999999998753 1567999999987764211
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
....|+.+|.+.+.+++.++.++ |+++++++||.+.++....... ............ ..
T Consensus 160 ------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~-~~~~~~~~~~~~-----~~ 221 (260)
T 2zat_A 160 ------------NLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQVLWM-DKARKEYMKESL-----RI 221 (260)
T ss_dssp ------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSTTHHHHS-SHHHHHHHHHHH-----TC
T ss_pred ------------CchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcccCccchhccc-ChHHHHHHHhcC-----CC
Confidence 12459999999999999998764 8999999999999875321000 001111111111 13
Q ss_pred ccceeHHHHHHHHHHhhcCCCC--Cc-cEEEec
Q 023515 228 FGWVNVKDVANAHIQAFEVPSA--NG-RYCLVE 257 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~~--~g-~~~~~~ 257 (281)
..+++++|+|+++++++..... .| .+++.|
T Consensus 222 ~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdg 254 (260)
T 2zat_A 222 RRLGNPEDCAGIVSFLCSEDASYITGETVVVGG 254 (260)
T ss_dssp SSCBCGGGGHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred CCCCCHHHHHHHHHHHcCcccCCccCCEEEECC
Confidence 4588999999999999976532 45 566654
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-29 Score=202.31 Aligned_cols=228 Identities=18% Similarity=0.131 Sum_probs=167.9
Q ss_pred CcchhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc
Q 023515 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (281)
Q Consensus 1 ~~~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 80 (281)
|+++.++++|+++||||+++||+++++.|+++|.+|++.+|+..+ ...++.... ..++.++++|++|+++++++++
T Consensus 1 M~n~f~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~--~~~~~~~~~--g~~~~~~~~Dv~d~~~v~~~~~ 76 (247)
T 4hp8_A 1 MKNPFSLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAPD--ETLDIIAKD--GGNASALLIDFADPLAAKDSFT 76 (247)
T ss_dssp --CTTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCCH--HHHHHHHHT--TCCEEEEECCTTSTTTTTTSST
T ss_pred CcCCcCCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcHH--HHHHHHHHh--CCcEEEEEccCCCHHHHHHHHH
Confidence 666667899999999999999999999999999999999997542 222222222 2578999999999998888876
Q ss_pred --CCcEeEEecccC-----CCCCCCccchhhhhHHHHHHHHHHHhhhCC----CccEEEEeccceeeecCCCCCCCCeee
Q 023515 81 --GCDGVCHTASPF-----YHDAKDPQVELLDPAVKGTLNVLNSCAKFP----SIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (281)
Q Consensus 81 --~~d~Vih~a~~~-----~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (281)
++|++|||||.. .+...+.|++.+++|+.|++.+.+++.++| +..++|++||..+..+.+
T Consensus 77 ~g~iDiLVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~g~~--------- 147 (247)
T 4hp8_A 77 DAGFDILVNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQGGI--------- 147 (247)
T ss_dssp TTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCS---------
T ss_pred hCCCCEEEECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCCCCC---------
Confidence 699999999852 233456688999999999999999987753 346899999987765321
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCC
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (281)
....|+.||.+...+.+.++.++ |+++++|.||.|.+|...... .............|
T Consensus 148 -------------~~~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~~~~~~~-~~~~~~~~~~~~~P----- 208 (247)
T 4hp8_A 148 -------------RVPSYTAAKHGVAGLTKLLANEWAAKGINVNAIAPGYIETNNTEALR-ADAARNKAILERIP----- 208 (247)
T ss_dssp -------------SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHH-TSHHHHHHHHTTCT-----
T ss_pred -------------CChHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCcchhhcc-cCHHHHHHHHhCCC-----
Confidence 12359999999999999998875 899999999999887532110 01111222222211
Q ss_pred CccceeHHHHHHHHHHhhcCCCC--CccEEEecCCC
Q 023515 227 TFGWVNVKDVANAHIQAFEVPSA--NGRYCLVERVS 260 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~~--~g~~~~~~~~~ 260 (281)
...+..++|+|.++++++..... .|+.+..++.+
T Consensus 209 lgR~g~peeiA~~v~fLaSd~a~~iTG~~i~VDGG~ 244 (247)
T 4hp8_A 209 AGRWGHSEDIAGAAVFLSSAAADYVHGAILNVDGGW 244 (247)
T ss_dssp TSSCBCTHHHHHHHHHHTSGGGTTCCSCEEEESTTG
T ss_pred CCCCcCHHHHHHHHHHHhCchhcCCcCCeEEECccc
Confidence 12367999999999999976543 57655555444
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-29 Score=209.10 Aligned_cols=221 Identities=17% Similarity=0.112 Sum_probs=160.6
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++|++|||||+|+||++++++|+++|++|++++|+.++...+.... ..++.++++|++|+++++++++
T Consensus 9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~d~~~v~~~~~~~~~~ 83 (263)
T 3ak4_A 9 DLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGL-----ENGGFAVEVDVTKRASVDAAMQKAIDA 83 (263)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC-----TTCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH-----hcCCeEEEEeCCCHHHHHHHHHHHHHH
Confidence 356799999999999999999999999999999999864433322211 1257889999999999888876
Q ss_pred --CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---C-ccEEEEeccceeeecCCCCCCCCeee
Q 023515 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---S-IKRVVLTSSMAAVLNTGKPRTPDVVV 149 (281)
Q Consensus 81 --~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~-~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (281)
++|+||||||.... ...+.|+..+++|+.++.++++++.+.+ + .++||++||..++.+.+
T Consensus 84 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------- 154 (263)
T 3ak4_A 84 LGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKVGAP--------- 154 (263)
T ss_dssp HTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCCT---------
T ss_pred cCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEecccccccCCC---------
Confidence 79999999996332 2234567899999999999999998742 3 57999999987654211
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCC-------Cc-cHHHHHHHHh
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTL-------NT-SAAAVLSLIK 218 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~-------~~-~~~~~~~~~~ 218 (281)
....|+.+|.+.+.+++.++.++ |++++++|||.++++...... .. ..........
T Consensus 155 -------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (263)
T 3ak4_A 155 -------------LLAHYSASKFAVFGWTQALAREMAPKNIRVNCVCPGFVKTAMQEREIIWEAELRGMTPEAVRAEYVS 221 (263)
T ss_dssp -------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBTTHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred -------------CchhHHHHHHHHHHHHHHHHHHHhHcCeEEEEEecccccChhhhhhccccccccccCcHHHHHHHHh
Confidence 12459999999999999998764 899999999999987521100 00 0011111222
Q ss_pred CCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCc-cEEEecC
Q 023515 219 GAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVER 258 (281)
Q Consensus 219 ~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~~ 258 (281)
.. ....+++++|+|+++++++.... ..| .+++.|+
T Consensus 222 ~~-----p~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG 259 (263)
T 3ak4_A 222 LT-----PLGRIEEPEDVADVVVFLASDAARFMTGQGINVTGG 259 (263)
T ss_dssp TC-----TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred cC-----CCCCCcCHHHHHHHHHHHhCccccCCCCCEEEECcC
Confidence 11 12458899999999999997643 245 5565543
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-29 Score=208.58 Aligned_cols=220 Identities=16% Similarity=0.146 Sum_probs=160.1
Q ss_pred chhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--
Q 023515 3 SVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-- 80 (281)
Q Consensus 3 ~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-- 80 (281)
+|+.+++|++|||||+|+||++++++|+++|++|++++|+.++...+.... ..++.++++|++|+++++++++
T Consensus 21 ~m~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~~~ 95 (266)
T 3grp_A 21 SMFKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADL-----GKDVFVFSANLSDRKSIKQLAEVA 95 (266)
T ss_dssp CTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CSSEEEEECCTTSHHHHHHHHHHH
T ss_pred chhccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceEEEEeecCCHHHHHHHHHHH
Confidence 355677899999999999999999999999999999999765443332211 2468999999999998888776
Q ss_pred -----CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCe
Q 023515 81 -----GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDV 147 (281)
Q Consensus 81 -----~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (281)
++|+||||||.... ...+.|+..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 96 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~Iv~isS~~~~~~~~------- 168 (266)
T 3grp_A 96 EREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIINITSIVGVVGNP------- 168 (266)
T ss_dssp HHHHTSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCC--------------
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEECCHHHcCCCC-------
Confidence 78999999996432 2234577899999999998888887642 457999999987765321
Q ss_pred eeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCC
Q 023515 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP 224 (281)
Q Consensus 148 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (281)
....|+.||.+.+.+++.++.++ |+++++++||.+.++..... ............
T Consensus 169 ---------------~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~---~~~~~~~~~~~~---- 226 (266)
T 3grp_A 169 ---------------GQTNYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIKSAMTDKL---NEKQKEAIMAMI---- 226 (266)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHTC---CHHHHHHHHTTC----
T ss_pred ---------------CchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCcCCCchhhcc---CHHHHHHHHhcC----
Confidence 12459999999999999998864 89999999999998753221 112222222222
Q ss_pred CCCccceeHHHHHHHHHHhhcCCCC--Ccc-EEEec
Q 023515 225 NVTFGWVNVKDVANAHIQAFEVPSA--NGR-YCLVE 257 (281)
Q Consensus 225 ~~~~~~i~~~D~a~~i~~~~~~~~~--~g~-~~~~~ 257 (281)
....+.+++|+|+++++++..... .|. +++.|
T Consensus 227 -p~~r~~~~edvA~~v~~L~s~~~~~itG~~i~vdG 261 (266)
T 3grp_A 227 -PMKRMGIGEEIAFATVYLASDEAAYLTGQTLHING 261 (266)
T ss_dssp -TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred -CCCCCcCHHHHHHHHHHHhCccccCccCCEEEECC
Confidence 234578999999999999976432 564 44443
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-29 Score=205.00 Aligned_cols=221 Identities=17% Similarity=0.136 Sum_probs=161.0
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------C
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------G 81 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~ 81 (281)
+|+++||||+|+||++++++|+++|++|++++|+.++.+.+..... .....++.++++|++|+++++++++ +
T Consensus 2 ~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (250)
T 2cfc_A 2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHW-HAYADKVLRVRADVADEGDVNAAIAATMEQFGA 80 (250)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHS-TTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH-HhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 6799999999999999999999999999999998654433222210 1112468999999999998888876 7
Q ss_pred CcEeEEecccCCCC--------CCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 82 CDGVCHTASPFYHD--------AKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 82 ~d~Vih~a~~~~~~--------~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
+|+||||||..... ..+.++..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 81 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~---------- 150 (250)
T 2cfc_A 81 IDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLVAFP---------- 150 (250)
T ss_dssp CCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT----------
T ss_pred CCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccCCC----------
Confidence 99999999864321 234466889999999998888887642 467999999987764211
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
....|+.+|.+.+.+++.++.++ |++++++|||.++||....... ............+ .
T Consensus 151 ------------~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~-~~~~~~~~~~~~~-----~ 212 (250)
T 2cfc_A 151 ------------GRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWRLD-QPELRDQVLARIP-----Q 212 (250)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTTHHHHT-SHHHHHHHHTTCT-----T
T ss_pred ------------CchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccCccccccC-CHHHHHHHHhcCC-----C
Confidence 12459999999999999998765 8999999999999986431000 1122222322221 2
Q ss_pred ccceeHHHHHHHHHHhhcCCCC--Cc-cEEEecC
Q 023515 228 FGWVNVKDVANAHIQAFEVPSA--NG-RYCLVER 258 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~~--~g-~~~~~~~ 258 (281)
..+++++|+|+++++++..+.. .| .+++.++
T Consensus 213 ~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 246 (250)
T 2cfc_A 213 KEIGTAAQVADAVMFLAGEDATYVNGAALVMDGA 246 (250)
T ss_dssp CSCBCHHHHHHHHHHHHSTTCTTCCSCEEEESTT
T ss_pred CCCcCHHHHHHHHHHHcCchhhcccCCEEEECCc
Confidence 3478999999999999986532 46 4455443
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-29 Score=208.73 Aligned_cols=232 Identities=16% Similarity=0.083 Sum_probs=162.4
Q ss_pred hhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 4 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
|+.+++|++|||||+|+||++++++|+++|++|++++|+.++.+.+...... ...++.++++|++|+++++++++
T Consensus 23 m~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dv~d~~~v~~~~~~~~ 100 (283)
T 3v8b_A 23 MMNQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVG--AGGQAIALEADVSDELQMRNAVRDLV 100 (283)
T ss_dssp ----CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTT--TTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred hcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 5556789999999999999999999999999999999987654444333222 23578999999999988888776
Q ss_pred ----CCcEeEEecccCC------CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCe
Q 023515 81 ----GCDGVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDV 147 (281)
Q Consensus 81 ----~~d~Vih~a~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (281)
++|++|||||... +...+.|+..+++|+.++.++++++.+.+ +.++||++||..+....+.+
T Consensus 101 ~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~~~~----- 175 (283)
T 3v8b_A 101 LKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRGGGAIVVVSSINGTRTFTTP----- 175 (283)
T ss_dssp HHHSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBCCST-----
T ss_pred HHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCceEEEEcChhhccCCCCC-----
Confidence 7899999999632 22334567899999999999999996532 45799999998665311100
Q ss_pred eeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC-CCC
Q 023515 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA-QTY 223 (281)
Q Consensus 148 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~-~~~ 223 (281)
....|+.||.+.+.+++.++.++ |+++++|+||.+.++.................... ...
T Consensus 176 ---------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (283)
T 3v8b_A 176 ---------------GATAYTATKAAQVAIVQQLALELGKHHIRVNAVCPGAIETNISDNTKLRHEEETAIPVEWPKGQV 240 (283)
T ss_dssp ---------------TCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECSBSSCTTCCTTBCCHHHHSCCCBCTTCSC
T ss_pred ---------------CchHHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCcCCcccccccccchhhhhhhhhhhhcC
Confidence 12459999999999999999874 79999999999999865432211111000000000 000
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCC--CCccEEEec
Q 023515 224 PNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVE 257 (281)
Q Consensus 224 ~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~ 257 (281)
+-....+..++|+|+++++++.... ..|+.+..+
T Consensus 241 p~~~~r~~~pedvA~~v~fL~s~~a~~itG~~i~vd 276 (283)
T 3v8b_A 241 PITDGQPGRSEDVAELIRFLVSERARHVTGSPVWID 276 (283)
T ss_dssp GGGTTCCBCHHHHHHHHHHHTSGGGTTCCSCEEEES
T ss_pred ccccCCCCCHHHHHHHHHHHcCccccCCcCCEEEEC
Confidence 1111346799999999999998643 356544443
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-29 Score=209.53 Aligned_cols=223 Identities=17% Similarity=0.155 Sum_probs=162.1
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++|++|||||+|+||++++++|+++|++|++++|+.++.+.+....... ...++.++++|++|+++++++++
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (263)
T 3ai3_A 5 ISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEK-FGVRVLEVAVDVATPEGVDAVVESVRSSF 83 (263)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH-HCCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHh-cCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 56899999999999999999999999999999999865433322221111 01468899999999998888776
Q ss_pred -CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 -~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
++|+||||||.... ...+.|+..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 84 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~----------- 152 (263)
T 3ai3_A 84 GGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGGGAIIHNASICAVQPLW----------- 152 (263)
T ss_dssp SSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT-----------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCCCC-----------
Confidence 79999999996432 2334567889999999999999987642 457999999987764211
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCC--------ccHHHHHHHHhC-
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLN--------TSAAAVLSLIKG- 219 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~--------~~~~~~~~~~~~- 219 (281)
....|+.+|.+.+.+++.++.+ +|+++++++||.++||....... ............
T Consensus 153 -----------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (263)
T 3ai3_A 153 -----------YEPIYNVTKAALMMFSKTLATEVIKDNIRVNCINPGLILTPDWIKTAKELTKDNGGDWKGYLQSVADEH 221 (263)
T ss_dssp -----------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHTTTTTCCHHHHHHHHHHHH
T ss_pred -----------CcchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhhhhHhhhcccCCcHHHHHHHHHhcC
Confidence 1245999999999999999876 58999999999999975221000 001111222221
Q ss_pred CCCCCCCCccceeHHHHHHHHHHhhcCCC--CCc-cEEEec
Q 023515 220 AQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (281)
Q Consensus 220 ~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~ 257 (281)
. ....+++++|+|+++++++.... ..| .|++.|
T Consensus 222 ~-----p~~~~~~~~dvA~~~~~l~s~~~~~~~G~~~~vdg 257 (263)
T 3ai3_A 222 A-----PIKRFASPEELANFFVFLCSERATYSVGSAYFVDG 257 (263)
T ss_dssp C-----TTCSCBCHHHHHHHHHHHTSTTCTTCCSCEEEEST
T ss_pred C-----CCCCCcCHHHHHHHHHHHcCccccCCCCcEEEECC
Confidence 1 12458899999999999998643 245 566654
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-29 Score=211.15 Aligned_cols=242 Identities=15% Similarity=0.104 Sum_probs=166.6
Q ss_pred chhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCc---------chhhhhhh-ccCCCCcEEEEEcCCCCc
Q 023515 3 SVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP---------KKTRHLLA-LDGASERLQLFKANLLEE 72 (281)
Q Consensus 3 ~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~---------~~~~~~~~-~~~~~~~~~~~~~D~~~~ 72 (281)
+|.++++|++|||||+|+||++++++|+++|++|++++|+.... ..+..... ......++.++++|++|.
T Consensus 4 ~m~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 83 (287)
T 3pxx_A 4 SMGRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDR 83 (287)
T ss_dssp SCCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCH
T ss_pred cccccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCH
Confidence 46667899999999999999999999999999999999974321 11111110 111135789999999999
Q ss_pred CcHHHHhc-------CCcEeEEecccCCC---CCCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCC
Q 023515 73 GSFDSIVD-------GCDGVCHTASPFYH---DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGK 141 (281)
Q Consensus 73 ~~~~~~~~-------~~d~Vih~a~~~~~---~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~ 141 (281)
++++++++ ++|+||||||.... ...+.|+..+++|+.++.++++++.+.+ +..++|++||..++.+...
T Consensus 84 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~ 163 (287)
T 3pxx_A 84 AAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVAGLIAAAQ 163 (287)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccchhcccccc
Confidence 98888776 78999999997432 2345677999999999999999999874 3468999999877653211
Q ss_pred CCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHH------
Q 023515 142 PRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAA------ 212 (281)
Q Consensus 142 ~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~------ 212 (281)
.+..+..+. + ....|+.+|.+.+.+++.++.++ |+++++++||.|.++...... ....
T Consensus 164 -----~~~~~~~~~-~-----~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~--~~~~~~~~~~ 230 (287)
T 3pxx_A 164 -----PPGAGGPQG-P-----GGAGYSYAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDMLNSAP--MYRQFRPDLE 230 (287)
T ss_dssp -----CC-----CH-H-----HHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESSBSSTTTSSHH--HHHHHCTTSS
T ss_pred -----cccccccCC-C-----ccchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCccccccccccc--hhhhhccccc
Confidence 011111111 1 12459999999999999998875 899999999999998643210 0000
Q ss_pred ---HHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCcc-EEEec
Q 023515 213 ---VLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGR-YCLVE 257 (281)
Q Consensus 213 ---~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~-~~~~~ 257 (281)
........+........+.+++|+|+++++++.... ..|. +++.|
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~p~dva~~v~fL~s~~a~~itG~~i~vdG 281 (287)
T 3pxx_A 231 APSRADALLAFPAMQAMPTPYVEASDISNAVCFLASDESRYVTGLQFKVDA 281 (287)
T ss_dssp SCCHHHHHHHGGGGCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred cchhHHHHhhhhhhcccCCCCCCHHHHHhhHheecchhhcCCCCceEeECc
Confidence 000000000111122568999999999999997543 3564 45443
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.3e-29 Score=205.49 Aligned_cols=221 Identities=14% Similarity=0.071 Sum_probs=161.8
Q ss_pred cCCCeEEEeCCc--hHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 7 AAGKVVCVTGAS--GYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 7 ~~~~~ilItGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
+++|+++||||+ |+||++++++|+++|++|++++|+....+.+..+.... ....++++|++|+++++++++
T Consensus 7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~ 83 (265)
T 1qsg_A 7 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQL---GSDIVLQCDVAEDASIDTMFAELGK 83 (265)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHT---TCCCEEECCTTCHHHHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHHhc---CCcEEEEccCCCHHHHHHHHHHHHH
Confidence 668999999999 99999999999999999999999872222222222111 134788999999998888776
Q ss_pred ---CCcEeEEecccCCC----------CCCCccchhhhhHHHHHHHHHHHhhhCCC-ccEEEEeccceeeecCCCCCCCC
Q 023515 81 ---GCDGVCHTASPFYH----------DAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAVLNTGKPRTPD 146 (281)
Q Consensus 81 ---~~d~Vih~a~~~~~----------~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~ 146 (281)
++|+||||||.... ...+.|+..+++|+.++.++++++.+.+. .++||++||..++.+.+
T Consensus 84 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~------ 157 (265)
T 1qsg_A 84 VWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIP------ 157 (265)
T ss_dssp TCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCT------
T ss_pred HcCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhccCCC------
Confidence 68999999997432 33455678999999999999999998642 35899999987654211
Q ss_pred eeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCC
Q 023515 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY 223 (281)
Q Consensus 147 ~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~ 223 (281)
....|+.+|.+.+.+++.++.++ |+++++++||.+++|..... ..............+
T Consensus 158 ----------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-~~~~~~~~~~~~~~p-- 218 (265)
T 1qsg_A 158 ----------------NYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGI-KDFRKMLAHCEAVTP-- 218 (265)
T ss_dssp ----------------TTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGS-TTHHHHHHHHHHHST--
T ss_pred ----------------CchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCccchhhcc-cccHHHHHHHHhcCC--
Confidence 12459999999999999998875 89999999999999864321 111222222222221
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCCC--Cc-cEEEecC
Q 023515 224 PNVTFGWVNVKDVANAHIQAFEVPSA--NG-RYCLVER 258 (281)
Q Consensus 224 ~~~~~~~i~~~D~a~~i~~~~~~~~~--~g-~~~~~~~ 258 (281)
...+.+++|+|+++++++..... .| .+++.++
T Consensus 219 ---~~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG 253 (265)
T 1qsg_A 219 ---IRRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGG 253 (265)
T ss_dssp ---TSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred ---CCCCCCHHHHHHHHHHHhCchhcCccCCEEEECCC
Confidence 23478999999999999975432 45 4555543
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=198.29 Aligned_cols=216 Identities=17% Similarity=0.140 Sum_probs=164.4
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---CCc
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---GCD 83 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---~~d 83 (281)
+++|+++||||+++||+++++.|+++|++|++++|+.+..+... ..++..+++|++|+++++++++ ++|
T Consensus 9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~~--------~~~~~~~~~Dv~~~~~v~~~~~~~g~iD 80 (242)
T 4b79_A 9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAPR--------HPRIRREELDITDSQRLQRLFEALPRLD 80 (242)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTSCC--------CTTEEEEECCTTCHHHHHHHHHHCSCCS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhhhh--------cCCeEEEEecCCCHHHHHHHHHhcCCCC
Confidence 47999999999999999999999999999999999876543311 2478899999999999988877 789
Q ss_pred EeEEecccCC---CCCCCccchhhhhHHHHHHHHHHHhhhCC--CccEEEEeccceeeecCCCCCCCCeeeecCCCCChh
Q 023515 84 GVCHTASPFY---HDAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPE 158 (281)
Q Consensus 84 ~Vih~a~~~~---~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~ 158 (281)
++|||||... +...+.|++.+++|+.+++.+.+++.+++ +..++|++||..+..+.+
T Consensus 81 iLVNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~~~~------------------ 142 (242)
T 4b79_A 81 VLVNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMYSTFGSA------------------ 142 (242)
T ss_dssp EEEECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCGGGTSCCS------------------
T ss_pred EEEECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCCC------------------
Confidence 9999999633 23345688999999999999999998863 236899999988765321
Q ss_pred hhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeHHH
Q 023515 159 VCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKD 235 (281)
Q Consensus 159 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D 235 (281)
....|+.||.+...+.+.++.++ |+++++|.||.|.+|...... .......+.....| ...+..++|
T Consensus 143 ----~~~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~m~~~~~-~~~~~~~~~~~~~P-----lgR~g~pee 212 (242)
T 4b79_A 143 ----DRPAYSASKGAIVQLTRSLACEYAAERIRVNAIAPGWIDTPLGAGLK-ADVEATRRIMQRTP-----LARWGEAPE 212 (242)
T ss_dssp ----SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCC-----C-CCHHHHHHHHHTCT-----TCSCBCHHH
T ss_pred ----CCHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCCChhhhccc-CCHHHHHHHHhcCC-----CCCCcCHHH
Confidence 12459999999999999998874 899999999999998643222 22233344443321 223679999
Q ss_pred HHHHHHHhhcCCCC--CccEEEecC
Q 023515 236 VANAHIQAFEVPSA--NGRYCLVER 258 (281)
Q Consensus 236 ~a~~i~~~~~~~~~--~g~~~~~~~ 258 (281)
+|.++++++..... .|+.+..++
T Consensus 213 iA~~v~fLaSd~a~~iTG~~l~VDG 237 (242)
T 4b79_A 213 VASAAAFLCGPGASFVTGAVLAVDG 237 (242)
T ss_dssp HHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred HHHHHHHHhCchhcCccCceEEECc
Confidence 99999999976443 565554443
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-29 Score=207.88 Aligned_cols=223 Identities=15% Similarity=0.120 Sum_probs=162.1
Q ss_pred hhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 4 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
++.+++|++|||||+|+||++++++|+++|++|++++|... ...+...... ...++.++++|++|.+++.++.+
T Consensus 26 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~-~~~~~~~~~~--~~~~~~~~~~Dv~d~~~v~~~~~~~~ 102 (273)
T 3uf0_A 26 PFSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDG-VKEVADEIAD--GGGSAEAVVADLADLEGAANVAEELA 102 (273)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTH-HHHHHHHHHT--TTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHHH-HHHHHHHHHh--cCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 34467899999999999999999999999999999996532 2222222111 23578999999999988877654
Q ss_pred ---CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeee
Q 023515 81 ---GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (281)
Q Consensus 81 ---~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (281)
++|+||||||.... ...+.|+..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 103 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~~--------- 173 (273)
T 3uf0_A 103 ATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSGRIVTIASMLSFQGGR--------- 173 (273)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCS---------
T ss_pred hcCCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchHhcCCCC---------
Confidence 79999999996432 2344567899999999999999986532 457899999987765221
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCC
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (281)
....|+.+|.+.+.+++.++.+ .|+++++++||.|++|...... ............. .
T Consensus 174 -------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~-~~~~~~~~~~~~~-----p 234 (273)
T 3uf0_A 174 -------------NVAAYAASKHAVVGLTRALASEWAGRGVGVNALAPGYVVTANTAALR-ADDERAAEITARI-----P 234 (273)
T ss_dssp -------------SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHH-TSHHHHHHHHHHS-----T
T ss_pred -------------CChhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCchhhcc-cCHHHHHHHHhcC-----C
Confidence 1245999999999999999887 5899999999999987532110 0112222222222 1
Q ss_pred CccceeHHHHHHHHHHhhcCCC--CCc-cEEEec
Q 023515 227 TFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~ 257 (281)
...+.+++|+|+++++++.... ..| .+++.|
T Consensus 235 ~~r~~~pedva~~v~~L~s~~a~~itG~~i~vdG 268 (273)
T 3uf0_A 235 AGRWATPEDMVGPAVFLASDAASYVHGQVLAVDG 268 (273)
T ss_dssp TSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCCCCCHHHHHHHHHHHhCchhcCCcCCEEEECc
Confidence 2357899999999999998643 356 445544
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-29 Score=207.95 Aligned_cols=221 Identities=18% Similarity=0.174 Sum_probs=160.1
Q ss_pred chhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--
Q 023515 3 SVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-- 80 (281)
Q Consensus 3 ~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-- 80 (281)
.|+.+++|+++||||+|+||++++++|+++|++|++++|+.++...+.+.... . .++.++++|++|+++++++++
T Consensus 23 ~~~~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~--~-~~~~~~~~Dv~d~~~v~~~~~~~ 99 (276)
T 2b4q_A 23 PYFSLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSA--Y-GDCQAIPADLSSEAGARRLAQAL 99 (276)
T ss_dssp TTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTT--S-SCEEECCCCTTSHHHHHHHHHHH
T ss_pred cccCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--c-CceEEEEeeCCCHHHHHHHHHHH
Confidence 34446789999999999999999999999999999999986543333222211 1 268899999999988888775
Q ss_pred -----CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---Cc----cEEEEeccceeeecCCCCC
Q 023515 81 -----GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SI----KRVVLTSSMAAVLNTGKPR 143 (281)
Q Consensus 81 -----~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~----~~~v~~SS~~~~~~~~~~~ 143 (281)
++|+||||||... ....+.|+..+++|+.++.++++++.+.+ +. ++||++||..++.+.+
T Consensus 100 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~~~~--- 176 (276)
T 2b4q_A 100 GELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISAMG--- 176 (276)
T ss_dssp HHHCSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTCCCC---
T ss_pred HHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcCCCC---
Confidence 7899999999632 22345577899999999999999887532 22 7999999987764211
Q ss_pred CCCeeeecCCCCChhhhccCCc-hhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHh-
Q 023515 144 TPDVVVDETWFSDPEVCKQSEL-WYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIK- 218 (281)
Q Consensus 144 ~~~~~~~e~~~~~~~~~~~~~~-~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~- 218 (281)
... .|+.+|.+.+.+++.++.++ |+++++++||.+.++..... ..........
T Consensus 177 -------------------~~~~~Y~asK~a~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~---~~~~~~~~~~~ 234 (276)
T 2b4q_A 177 -------------------EQAYAYGPSKAALHQLSRMLAKELVGEHINVNVIAPGRFPSRMTRHI---ANDPQALEADS 234 (276)
T ss_dssp -------------------CSCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSTTTHHH---HHCHHHHHHHH
T ss_pred -------------------CCccccHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcCcchhhc---chhHHHHHHhh
Confidence 112 49999999999999998764 89999999999998753210 0001111111
Q ss_pred -CCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCccEEEe
Q 023515 219 -GAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLV 256 (281)
Q Consensus 219 -~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~ 256 (281)
..+ ...+.+++|+|+++++++.... ..|..+..
T Consensus 235 ~~~p-----~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~v 270 (276)
T 2b4q_A 235 ASIP-----MGRWGRPEEMAALAISLAGTAGAYMTGNVIPI 270 (276)
T ss_dssp HTST-----TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEE
T ss_pred cCCC-----CCCcCCHHHHHHHHHHHhCccccCCCCCEEEe
Confidence 111 2347899999999999997643 34644433
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-29 Score=207.25 Aligned_cols=222 Identities=12% Similarity=0.079 Sum_probs=159.8
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcE-EEEEcCCCCcCcHHHHhc----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERL-QLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~---- 80 (281)
.+++|+++||||+|+||++++++|+++|++|++++|+.++.+.+.+.. ..++ .++++|++|.++++++++
T Consensus 8 ~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (254)
T 2wsb_A 8 RLDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQEL-----GAAVAARIVADVTDAEAMTAAAAEAEA 82 (254)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----GGGEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----cccceeEEEEecCCHHHHHHHHHHHHh
Confidence 356899999999999999999999999999999999865433322211 1346 889999999988888763
Q ss_pred --CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 --~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|+||||||.... ...+.++..+++|+.++.++++++.+.+ +.++||++||..++.+.+.
T Consensus 83 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~--------- 153 (254)
T 2wsb_A 83 VAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGAGAIVNLGSMSGTIVNRP--------- 153 (254)
T ss_dssp HSCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCSS---------
T ss_pred hCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEecchhccCCCC---------
Confidence 78999999996332 1223456889999999998888876531 4679999999876542110
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
. +...|+.+|.+.|.+++.++.++ |++++++|||.++|+...... .............+ .
T Consensus 154 -----~------~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~Pg~v~t~~~~~~~-~~~~~~~~~~~~~~-----~ 216 (254)
T 2wsb_A 154 -----Q------FASSYMASKGAVHQLTRALAAEWAGRGVRVNALAPGYVATEMTLKMR-ERPELFETWLDMTP-----M 216 (254)
T ss_dssp -----S------CBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHHHH-TCHHHHHHHHHTST-----T
T ss_pred -----C------cchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecccCchhhhccc-cChHHHHHHHhcCC-----C
Confidence 0 11459999999999999988775 899999999999987532100 01122222333221 2
Q ss_pred ccceeHHHHHHHHHHhhcCCC--CCc-cEEEecC
Q 023515 228 FGWVNVKDVANAHIQAFEVPS--ANG-RYCLVER 258 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~~ 258 (281)
..+++++|+|+++++++.... ..| .+++.|+
T Consensus 217 ~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 250 (254)
T 2wsb_A 217 GRCGEPSEIAAAALFLASPAASYVTGAILAVDGG 250 (254)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCCCHHHHHHHHHHHhCcccccccCCEEEECCC
Confidence 458899999999999997542 245 4555544
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=202.41 Aligned_cols=220 Identities=14% Similarity=0.090 Sum_probs=152.2
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEE-cCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASV-RDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
+++|+|+||||+|+||++++++|+++|++|++++ |++...+.+.+..... ..++.++++|++|+++++++++
T Consensus 3 l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (247)
T 2hq1_A 3 LKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAA--GINVVVAKGDVKNPEDVENMVKTAMDA 80 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHT--TCCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence 5689999999999999999999999999999994 5544333322222111 2468999999999998888776
Q ss_pred --CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 --GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 --~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|+||||||... ....+.++..+++|+.++.++++++.+.+ +.++||++||..+.++.+
T Consensus 81 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~---------- 150 (247)
T 2hq1_A 81 FGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSIAGIIGNA---------- 150 (247)
T ss_dssp HSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC------------------
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccCCC----------
Confidence 7899999998632 12345677899999999999999988632 457999999987665321
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
....|+.+|.+.+.+++.++.++ |+++++++||.+.++..... ..........+. ..
T Consensus 151 ------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~---~~~~~~~~~~~~-----~~ 210 (247)
T 2hq1_A 151 ------------GQANYAASKAGLIGFTKSIAKEFAAKGIYCNAVAPGIIKTDMTDVL---PDKVKEMYLNNI-----PL 210 (247)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTS---CHHHHHHHHTTS-----TT
T ss_pred ------------CCcHhHHHHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEeccchhhc---chHHHHHHHhhC-----CC
Confidence 12459999999999999988764 89999999999987642211 111222222221 23
Q ss_pred ccceeHHHHHHHHHHhhcCCC--CCc-cEEEecC
Q 023515 228 FGWVNVKDVANAHIQAFEVPS--ANG-RYCLVER 258 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~~ 258 (281)
..+++++|+|+++++++.... ..| .|++.++
T Consensus 211 ~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 244 (247)
T 2hq1_A 211 KRFGTPEEVANVVGFLASDDSNYITGQVINIDGG 244 (247)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCCCHHHHHHHHHHHcCcccccccCcEEEeCCC
Confidence 458899999999999987543 245 6777653
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-29 Score=208.29 Aligned_cols=225 Identities=17% Similarity=0.111 Sum_probs=165.0
Q ss_pred hhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 4 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
|+.+++|++|||||+|+||++++++|+++|++|++++|+.++.+.+....... ...++.++++|++|.++++++++
T Consensus 15 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~~ 93 (266)
T 4egf_A 15 VLRLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQ-FGTDVHTVAIDLAEPDAPAELARRAA 93 (266)
T ss_dssp GGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH-HCCCEEEEECCTTSTTHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh-cCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 44567899999999999999999999999999999999876544433322110 12478999999999999888776
Q ss_pred ----CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC----CccEEEEeccceeeecCCCCCCCCe
Q 023515 81 ----GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP----SIKRVVLTSSMAAVLNTGKPRTPDV 147 (281)
Q Consensus 81 ----~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (281)
++|++|||||.... ...+.|+..+++|+.++.++++++.+.+ ..++||++||..++.+.+
T Consensus 94 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------- 166 (266)
T 4egf_A 94 EAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALAPLP------- 166 (266)
T ss_dssp HHHTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCT-------
T ss_pred HHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhccCCC-------
Confidence 78999999996432 2344577899999999999999998752 246899999987764211
Q ss_pred eeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCC
Q 023515 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP 224 (281)
Q Consensus 148 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (281)
....|+.+|.+.+.+++.++.++ |+++++|+||.|.++....... ............
T Consensus 167 ---------------~~~~Y~asK~a~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~-~~~~~~~~~~~~---- 226 (266)
T 4egf_A 167 ---------------DHYAYCTSKAGLVMATKVLARELGPHGIRANSVCPTVVLTEMGQRVWG-DEAKSAPMIARI---- 226 (266)
T ss_dssp ---------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBCSHHHHHHTC-SHHHHHHHHTTC----
T ss_pred ---------------CChHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCchhhhhcc-ChHHHHHHHhcC----
Confidence 12459999999999999998874 8999999999999874221110 112222222221
Q ss_pred CCCccceeHHHHHHHHHHhhcCCC--CCcc-EEEec
Q 023515 225 NVTFGWVNVKDVANAHIQAFEVPS--ANGR-YCLVE 257 (281)
Q Consensus 225 ~~~~~~i~~~D~a~~i~~~~~~~~--~~g~-~~~~~ 257 (281)
....+.+++|+|+++++++.... ..|. +++.|
T Consensus 227 -p~~r~~~p~dva~~v~~L~s~~~~~itG~~i~vdG 261 (266)
T 4egf_A 227 -PLGRFAVPHEVSDAVVWLASDAASMINGVDIPVDG 261 (266)
T ss_dssp -TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred -CCCCCcCHHHHHHHHHHHhCchhcCccCcEEEECC
Confidence 12347799999999999998643 3564 44443
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-29 Score=206.90 Aligned_cols=206 Identities=19% Similarity=0.187 Sum_probs=155.7
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++|++|||||+|+||++++++|+++|++|++++|+.++...+. ..++.++++|++|.++++++++
T Consensus 14 ~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~--------~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 85 (266)
T 3p19_A 14 SMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALN--------LPNTLCAQVDVTDKYTFDTAITRAEKIY 85 (266)
T ss_dssp -CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHTTC--------CTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHhh--------cCCceEEEecCCCHHHHHHHHHHHHHHC
Confidence 45789999999999999999999999999999999754332211 1368899999999998888776
Q ss_pred -CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 -GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 -~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
++|+||||||... ....+.|+..+++|+.|+.++++++.+.+ +.++||++||..++.+.+
T Consensus 86 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~~----------- 154 (266)
T 3p19_A 86 GPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGKKTFP----------- 154 (266)
T ss_dssp CSEEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCT-----------
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhCCCCC-----------
Confidence 7899999999632 22334567889999999999988887532 457999999987765221
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCcc-HHHHHHHHhCCCCCCCCC
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTS-AAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 227 (281)
....|+.||.+.+.+++.++.+ .|+++++++||.|.++......... ...+..... ..
T Consensus 155 -----------~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~-------~~ 216 (266)
T 3p19_A 155 -----------DHAAYCGTKFAVHAISENVREEVAASNVRVMTIAPSAVKTELLSHTTSQQIKDGYDAWRV-------DM 216 (266)
T ss_dssp -----------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCSCHHHHHHHHHHHH-------HT
T ss_pred -----------CCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCccccchhhcccchhhhHHHHhhcc-------cc
Confidence 1245999999999999999887 4899999999999998643222111 111111110 12
Q ss_pred ccceeHHHHHHHHHHhhcCCCC
Q 023515 228 FGWVNVKDVANAHIQAFEVPSA 249 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~~ 249 (281)
..+++++|+|+++++++.++..
T Consensus 217 ~r~~~pedvA~av~~l~~~~~~ 238 (266)
T 3p19_A 217 GGVLAADDVARAVLFAYQQPQN 238 (266)
T ss_dssp TCCBCHHHHHHHHHHHHHSCTT
T ss_pred cCCCCHHHHHHHHHHHHcCCCC
Confidence 3478999999999999998765
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=204.75 Aligned_cols=218 Identities=18% Similarity=0.145 Sum_probs=160.8
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
++++|+|+||||+|+||++++++|+++|++|++++|+.++...+.+.. ..++.++++|++|+++++++++
T Consensus 9 ~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (265)
T 2o23_A 9 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL-----GNNCVFAPADVTSEKDVQTALALAKGK 83 (265)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHH-----CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHh-----CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 466899999999999999999999999999999999876654433321 2468999999999999888876
Q ss_pred --CCcEeEEecccCCC-----------CCCCccchhhhhHHHHHHHHHHHhhhCC---------CccEEEEeccceeeec
Q 023515 81 --GCDGVCHTASPFYH-----------DAKDPQVELLDPAVKGTLNVLNSCAKFP---------SIKRVVLTSSMAAVLN 138 (281)
Q Consensus 81 --~~d~Vih~a~~~~~-----------~~~~~~~~~~~~n~~~~~~l~~~~~~~~---------~~~~~v~~SS~~~~~~ 138 (281)
++|+||||||.... ...+.++..+++|+.++.++++++.+.+ +.++||++||..++.+
T Consensus 84 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~ 163 (265)
T 2o23_A 84 FGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEG 163 (265)
T ss_dssp HSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHC
T ss_pred CCCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCChhhcCC
Confidence 79999999996432 2234467889999999999999998752 3568999999877652
Q ss_pred CCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHH
Q 023515 139 TGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLS 215 (281)
Q Consensus 139 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~ 215 (281)
.+ ....|+.+|.+.+.+++.++.+ .|+++++++||.+.++....... .....
T Consensus 164 ~~----------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~---~~~~~ 218 (265)
T 2o23_A 164 QV----------------------GQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTSLPE---KVCNF 218 (265)
T ss_dssp CT----------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC-------------CH
T ss_pred CC----------------------CCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccccCccccccCH---HHHHH
Confidence 11 1245999999999999998876 38999999999999876332110 01111
Q ss_pred HHhCCCCCCCCCccceeHHHHHHHHHHhhcCCCCCc-cEEEec
Q 023515 216 LIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPSANG-RYCLVE 257 (281)
Q Consensus 216 ~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~~~g-~~~~~~ 257 (281)
.....+ . ...+++++|+|+++++++......| .+.+.|
T Consensus 219 ~~~~~~-~---~~~~~~~~dva~~~~~l~~~~~~~G~~i~vdg 257 (265)
T 2o23_A 219 LASQVP-F---PSRLGDPAEYAHLVQAIIENPFLNGEVIRLDG 257 (265)
T ss_dssp HHHTCS-S---SCSCBCHHHHHHHHHHHHHCTTCCSCEEEEST
T ss_pred HHHcCC-C---cCCCCCHHHHHHHHHHHhhcCccCceEEEECC
Confidence 111111 1 1347899999999999998665566 444544
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-29 Score=209.33 Aligned_cols=225 Identities=14% Similarity=0.078 Sum_probs=161.2
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
|+++|++|||||+|+||++++++|+++|++|++++|+.++.+.+....... ..++.++++|++|.++++++++
T Consensus 21 m~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 98 (279)
T 3sju_A 21 MSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAA--GHDVDGSSCDVTSTDEVHAAVAAAVER 98 (279)
T ss_dssp ----CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 346899999999999999999999999999999999876544433332221 3578999999999998888775
Q ss_pred --CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhh--CC---CccEEEEeccceeeecCCCCCCCCee
Q 023515 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAK--FP---SIKRVVLTSSMAAVLNTGKPRTPDVV 148 (281)
Q Consensus 81 --~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~--~~---~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (281)
++|+||||||.... ...+.|+..+++|+.++.++++++.+ .+ +.++||++||..++.+.+
T Consensus 99 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS~~~~~~~~-------- 170 (279)
T 3sju_A 99 FGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIASTGGKQGVM-------- 170 (279)
T ss_dssp HCSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECCGGGTSCCT--------
T ss_pred cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECChhhccCCC--------
Confidence 68999999996332 23345678899999999999999877 21 447999999987764221
Q ss_pred eecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCC-------CCCccHHHHHHHHh
Q 023515 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQP-------TLNTSAAAVLSLIK 218 (281)
Q Consensus 149 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~-------~~~~~~~~~~~~~~ 218 (281)
....|+.+|++.+.+++.++.+ .|+++++++||.|.+|.... ..............
T Consensus 171 --------------~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (279)
T 3sju_A 171 --------------YAAPYTASKHGVVGFTKSVGFELAKTGITVNAVCPGYVETPMAERVREGYARHWGVTEQEVHERFN 236 (279)
T ss_dssp --------------TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEESSBCSHHHHHHHHSCCSSSCCCHHHHHHHHH
T ss_pred --------------CChhHHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCcccchHHHHHHhhhhhcccCChHHHHHHHH
Confidence 1245999999999999999887 48999999999998864211 00001111222222
Q ss_pred CCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCcc-EEEecC
Q 023515 219 GAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGR-YCLVER 258 (281)
Q Consensus 219 ~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~-~~~~~~ 258 (281)
.. .....+.+++|+|+++++++.... ..|. +++.|+
T Consensus 237 ~~----~p~~r~~~pedvA~~v~~L~s~~a~~itG~~i~vdGG 275 (279)
T 3sju_A 237 AK----IPLGRYSTPEEVAGLVGYLVTDAAASITAQALNVCGG 275 (279)
T ss_dssp TT----CTTSSCBCHHHHHHHHHHHTSSGGGGCCSCEEEESTT
T ss_pred hc----CCCCCCCCHHHHHHHHHHHhCccccCcCCcEEEECCC
Confidence 11 123457899999999999998654 3564 455443
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=203.40 Aligned_cols=222 Identities=18% Similarity=0.114 Sum_probs=163.8
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++|++|||||+++||+++++.|+++|++|++++|+.++.+....+. ..++.++++|++|+++++++++
T Consensus 27 L~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~-----g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 101 (273)
T 4fgs_A 27 LNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI-----GGGAVGIQADSANLAELDRLYEKVKAEA 101 (273)
T ss_dssp TTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CTTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred hCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-----CCCeEEEEecCCCHHHHHHHHHHHHHHc
Confidence 67899999999999999999999999999999999876544433222 2467889999999998888775
Q ss_pred -CCcEeEEeccc-----CCCCCCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCCCCCeeeecCC
Q 023515 81 -GCDGVCHTASP-----FYHDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (281)
Q Consensus 81 -~~d~Vih~a~~-----~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~ 153 (281)
++|++|||||. +.+...+.|+..+++|+.|++++.+++.+.+ +.+++|++||..+..+.+
T Consensus 102 G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~~~~~------------- 168 (273)
T 4fgs_A 102 GRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGSTGTP------------- 168 (273)
T ss_dssp SCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGGSCCT-------------
T ss_pred CCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhccCCC-------------
Confidence 68999999985 3334456788999999999999999999975 345899999987765321
Q ss_pred CCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccH----HHHHHHHhCCCCCCCC
Q 023515 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSA----AAVLSLIKGAQTYPNV 226 (281)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 226 (281)
....|+.+|.+...+.+.++.++ |+++++|.||.|.+|.......... .....+....|
T Consensus 169 ---------~~~~Y~asKaav~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~P----- 234 (273)
T 4fgs_A 169 ---------AFSVYAASKAALRSFARNWILDLKDRGIRINTLSPGPTETTGLVELAGKDPVQQQGLLNALAAQVP----- 234 (273)
T ss_dssp ---------TCHHHHHHHHHHHHHHHHHHHHTTTSCEEEEEEEECSBCC---------CHHHHHHHHHHHHHHST-----
T ss_pred ---------CchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHhhccCchhhHHHHHHHHhcCC-----
Confidence 12459999999999999999875 7999999999999886443222111 11222222211
Q ss_pred CccceeHHHHHHHHHHhhcCCCC--CccEEEecCCC
Q 023515 227 TFGWVNVKDVANAHIQAFEVPSA--NGRYCLVERVS 260 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~~--~g~~~~~~~~~ 260 (281)
...+..++|+|.++++++..... .|+.+..++..
T Consensus 235 lgR~g~peeiA~~v~FLaSd~a~~iTG~~i~VDGG~ 270 (273)
T 4fgs_A 235 MGRVGRAEEVAAAALFLASDDSSFVTGAELFVDGGS 270 (273)
T ss_dssp TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred CCCCcCHHHHHHHHHHHhCchhcCccCCeEeECcCh
Confidence 12367999999999999976443 57665554433
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=204.35 Aligned_cols=219 Identities=16% Similarity=0.122 Sum_probs=161.0
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC-CcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN-DPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
+++|++|||||+|+||++++++|+++|++|++++++.. ..+.+..+.... ..++.++++|++|+++++++++
T Consensus 29 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 106 (271)
T 3v2g_A 29 LAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQA--GGRAVAIRADNRDAEAIEQAIRETVEA 106 (271)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999977653 222222222221 2578999999999998888776
Q ss_pred --CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCCCCCeeeecC
Q 023515 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (281)
Q Consensus 81 --~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~ 152 (281)
++|++|||||.... ...+.|+..+++|+.++.++++++.+.+ +.+++|++||..+.....
T Consensus 107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~~~~~~~------------ 174 (271)
T 3v2g_A 107 LGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAELVPW------------ 174 (271)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGGGTCCCS------------
T ss_pred cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChhhccCCC------------
Confidence 78999999996332 2345577899999999999999999864 356899999975543110
Q ss_pred CCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCcc
Q 023515 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG 229 (281)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (281)
.....|+.+|.+.+.+++.++.++ |+++++|+||.|.++....... .. ....... ....
T Consensus 175 ---------~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~-~~---~~~~~~~-----~~~r 236 (271)
T 3v2g_A 175 ---------PGISLYSASKAALAGLTKGLARDLGPRGITVNIVHPGSTDTDMNPADGD-HA---EAQRERI-----ATGS 236 (271)
T ss_dssp ---------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSSSSCSSCS-SH---HHHHHTC-----TTSS
T ss_pred ---------CCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCCCcCCcccccch-hH---HHHHhcC-----CCCC
Confidence 012459999999999999998875 8999999999999987543221 11 1122221 1233
Q ss_pred ceeHHHHHHHHHHhhcCCC--CCcc-EEEec
Q 023515 230 WVNVKDVANAHIQAFEVPS--ANGR-YCLVE 257 (281)
Q Consensus 230 ~i~~~D~a~~i~~~~~~~~--~~g~-~~~~~ 257 (281)
+..++|+|+++++++.... ..|. +++.|
T Consensus 237 ~~~pedvA~~v~fL~s~~~~~itG~~i~vdG 267 (271)
T 3v2g_A 237 YGEPQDIAGLVAWLAGPQGKFVTGASLTIDG 267 (271)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCCHHHHHHHHHHHhCcccCCccCCEEEeCc
Confidence 7799999999999997543 3564 44443
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=204.75 Aligned_cols=216 Identities=17% Similarity=0.152 Sum_probs=161.3
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC-CcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN-DPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
+++|+++||||+|+||++++++|+++|++|++++|+.. ..+.+....... ..++.++++|++|.++++++++
T Consensus 26 l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~v~~~~~~~~~~ 103 (269)
T 4dmm_A 26 LTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAA--GGEAFAVKADVSQESEVEALFAAVIER 103 (269)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999998543 223322222221 2478999999999998888776
Q ss_pred --CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 --~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|+||||||.... ...+.|+..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 104 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 173 (269)
T 4dmm_A 104 WGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIASVVGEMGNP---------- 173 (269)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCHHHHHCCT----------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCCCC----------
Confidence 78999999997432 2345577899999999999999987642 456999999987765321
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
....|+.||.+.+.+++.++.+ .|+++++++||.|.++.... .......... ..
T Consensus 174 ------------~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~------~~~~~~~~~~-----p~ 230 (269)
T 4dmm_A 174 ------------GQANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATDMTSE------LAAEKLLEVI-----PL 230 (269)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBTTSCSCH------HHHHHHGGGC-----TT
T ss_pred ------------CchhHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEECCCcCccccc------ccHHHHHhcC-----CC
Confidence 1245999999999999999886 48999999999999876331 1111122211 12
Q ss_pred ccceeHHHHHHHHHHhhcCCC---CCc-cEEEec
Q 023515 228 FGWVNVKDVANAHIQAFEVPS---ANG-RYCLVE 257 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~---~~g-~~~~~~ 257 (281)
..+.+++|+|+++++++..+. ..| .+++.|
T Consensus 231 ~r~~~~~dvA~~v~~l~s~~~~~~itG~~i~vdG 264 (269)
T 4dmm_A 231 GRYGEAAEVAGVVRFLAADPAAAYITGQVINIDG 264 (269)
T ss_dssp SSCBCHHHHHHHHHHHHHCGGGGGCCSCEEEEST
T ss_pred CCCCCHHHHHHHHHHHhCCcccCCCcCCEEEECC
Confidence 347899999999999998743 246 455544
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.3e-29 Score=206.20 Aligned_cols=210 Identities=17% Similarity=0.147 Sum_probs=153.4
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++|++|||||+|+||++++++|+++|++|++++|+.++.+.+....... ..++.++.+|++|.++++++++
T Consensus 2 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 79 (264)
T 3tfo_A 2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDA--GGTALAQVLDVTDRHSVAAFAQAAVDTW 79 (264)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 45899999999999999999999999999999999876554444333222 2578899999999998888775
Q ss_pred -CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 -~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
++|++|||||.... ...+.|+..+++|+.|+.++++++.+.+ +.++||++||..++.+.+
T Consensus 80 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~~----------- 148 (264)
T 3tfo_A 80 GRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSGQIINIGSIGALSVVP----------- 148 (264)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCT-----------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEEcCHHHcccCC-----------
Confidence 78999999996332 2345577899999999999999987642 457899999987765221
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc-CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccc
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK-SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGW 230 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (281)
....|+.||.+.+.+++.++.++ |+++++|+||.|.++......... .... .......+
T Consensus 149 -----------~~~~Y~asKaal~~l~~~la~e~~gIrvn~v~PG~v~T~~~~~~~~~~---~~~~------~~~~~~~~ 208 (264)
T 3tfo_A 149 -----------TAAVYCATKFAVRAISDGLRQESTNIRVTCVNPGVVESELAGTITHEE---TMAA------MDTYRAIA 208 (264)
T ss_dssp -----------TCHHHHHHHHHHHHHHHHHHHHCSSEEEEEEEECCC--------------------------------C
T ss_pred -----------CChhHHHHHHHHHHHHHHHHHhCCCCEEEEEecCCCcCcccccccchh---HHHH------HHhhhccC
Confidence 12459999999999999998876 899999999999887633211000 0000 00011125
Q ss_pred eeHHHHHHHHHHhhcCCCC
Q 023515 231 VNVKDVANAHIQAFEVPSA 249 (281)
Q Consensus 231 i~~~D~a~~i~~~~~~~~~ 249 (281)
++++|+|+++++++..+..
T Consensus 209 ~~pedvA~~v~~l~s~~~~ 227 (264)
T 3tfo_A 209 LQPADIARAVRQVIEAPQS 227 (264)
T ss_dssp CCHHHHHHHHHHHHHSCTT
T ss_pred CCHHHHHHHHHHHhcCCcc
Confidence 7999999999999998765
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-28 Score=203.77 Aligned_cols=221 Identities=16% Similarity=0.172 Sum_probs=158.4
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEc-CCCCcchhhhhhhccCCCCcEEEEEcCCCCc----CcHHHHhc
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVR-DPNDPKKTRHLLALDGASERLQLFKANLLEE----GSFDSIVD 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~----~~~~~~~~ 80 (281)
.|++|+++||||+|+||++++++|+++|++|++++| +.++...+....... ...++.++++|++|. ++++++++
T Consensus 8 ~~~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 86 (276)
T 1mxh_A 8 ASECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAA-RAGSAVLCKGDLSLSSSLLDCCEDIID 86 (276)
T ss_dssp ---CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH-STTCEEEEECCCSSSTTHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHh-cCCceEEEeccCCCccccHHHHHHHHH
Confidence 456899999999999999999999999999999999 654333332222111 024688999999999 87777765
Q ss_pred -------CCcEeEEecccCCC-----CCC-----------CccchhhhhHHHHHHHHHHHhhhCC--Cc------cEEEE
Q 023515 81 -------GCDGVCHTASPFYH-----DAK-----------DPQVELLDPAVKGTLNVLNSCAKFP--SI------KRVVL 129 (281)
Q Consensus 81 -------~~d~Vih~a~~~~~-----~~~-----------~~~~~~~~~n~~~~~~l~~~~~~~~--~~------~~~v~ 129 (281)
++|+||||||.... ... +.|+..+++|+.++.++++++.+.+ +. ++||+
T Consensus 87 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g~iv~ 166 (276)
T 1mxh_A 87 CSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVN 166 (276)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEE
T ss_pred HHHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCcEEEE
Confidence 78999999996321 122 5567899999999999999999864 23 78999
Q ss_pred eccceeeecCCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCC
Q 023515 130 TSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTL 206 (281)
Q Consensus 130 ~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~ 206 (281)
+||..++.+.+ ....|+.||.+.+.+++.++.++ |+++++|+||.+++| . ..
T Consensus 167 isS~~~~~~~~----------------------~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~PG~v~t~-~--~~ 221 (276)
T 1mxh_A 167 LCDAMTDLPLP----------------------GFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLP-P--AM 221 (276)
T ss_dssp ECCGGGGSCCT----------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCC-S--SS
T ss_pred ECchhhcCCCC----------------------CCeehHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCC-c--cC
Confidence 99987764211 12459999999999999998765 899999999999998 2 11
Q ss_pred CccHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCCC--Cc-cEEEecC
Q 023515 207 NTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPSA--NG-RYCLVER 258 (281)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~~--~g-~~~~~~~ 258 (281)
............+ ..+++++++|+|+++++++..... .| .+++.|+
T Consensus 222 --~~~~~~~~~~~~p----~~r~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG 270 (276)
T 1mxh_A 222 --PQETQEEYRRKVP----LGQSEASAAQIADAIAFLVSKDAGYITGTTLKVDGG 270 (276)
T ss_dssp --CHHHHHHHHTTCT----TTSCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred --CHHHHHHHHhcCC----CCCCCCCHHHHHHHHHHHhCccccCccCcEEEECCc
Confidence 1222222222211 122388999999999999975432 46 4455443
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-29 Score=207.58 Aligned_cols=223 Identities=19% Similarity=0.120 Sum_probs=155.8
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----CCcE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----GCDG 84 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~d~ 84 (281)
||+||||||+|+||++++++|+++|++|++++|+.++... .+++|+++.++++++++ ++|+
T Consensus 1 Mk~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---------------~~~~D~~~~~~~~~~~~~~~~~~d~ 65 (255)
T 2dkn_A 1 MSVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEA---------------DLSTPGGRETAVAAVLDRCGGVLDG 65 (255)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC---------------CTTSHHHHHHHHHHHHHHHTTCCSE
T ss_pred CcEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccc---------------cccCCcccHHHHHHHHHHcCCCccE
Confidence 4689999999999999999999999999999998754321 15689999888888886 8999
Q ss_pred eEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhC---CCccEEEEeccceeeecCCCCCCCCeeeec-------CCC
Q 023515 85 VCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDE-------TWF 154 (281)
Q Consensus 85 Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e-------~~~ 154 (281)
||||||.... ...++..+++|+.++.++++++.+. .+.++||++||..++.+.. ...+..| +.+
T Consensus 66 vi~~Ag~~~~--~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~----~~~~~~~~~~~~~~~~~ 139 (255)
T 2dkn_A 66 LVCCAGVGVT--AANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGA----AELPMVEAMLAGDEARA 139 (255)
T ss_dssp EEECCCCCTT--SSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSTTG----GGCHHHHHHHHTCHHHH
T ss_pred EEECCCCCCc--chhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEeccccccccc----cccchhhhhcccchhhh
Confidence 9999997542 2456799999999999999988874 2457999999988765221 0011111 000
Q ss_pred CC-hhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccc
Q 023515 155 SD-PEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGW 230 (281)
Q Consensus 155 ~~-~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (281)
.. ......+...|+.+|.+.|.+++.++++ .|++++++|||.++|+........ ......... ..+ ...+|
T Consensus 140 ~~~~~~~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~~~~~~~~~~~--~~~~~~~~~--~~~-~~~~~ 214 (255)
T 2dkn_A 140 IELAEQQGQTHLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETPLLQASKAD--PRYGESTRR--FVA-PLGRG 214 (255)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECCBCSHHHHHHHHC--TTTHHHHHS--CCC-TTSSC
T ss_pred hhhccccCCcchhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcCCcccchhhhhcccc--hhhHHHHHH--HHH-HhcCC
Confidence 00 0000012346999999999999998876 599999999999998752110000 000011111 112 44579
Q ss_pred eeHHHHHHHHHHhhcCC--CCCc-cEEEec
Q 023515 231 VNVKDVANAHIQAFEVP--SANG-RYCLVE 257 (281)
Q Consensus 231 i~~~D~a~~i~~~~~~~--~~~g-~~~~~~ 257 (281)
++++|+|+++++++.++ ...| .|++.+
T Consensus 215 ~~~~dva~~~~~l~~~~~~~~~G~~~~v~g 244 (255)
T 2dkn_A 215 SEPREVAEAIAFLLGPQASFIHGSVLFVDG 244 (255)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCHHHHHHHHHHHhCCCcccceeeEEEecC
Confidence 99999999999999875 2345 677764
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.2e-29 Score=201.57 Aligned_cols=213 Identities=15% Similarity=0.057 Sum_probs=162.1
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------C
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------G 81 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~ 81 (281)
+|+||||||+++||+++++.|+++|++|++++|+++....+.+. ..++.++++|++|+++++++++ +
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~ 75 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKE------RPNLFYFHGDVADPLTLKKFVEYAMEKLQR 75 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTT------CTTEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh------cCCEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 57999999999999999999999999999999986543332221 2478899999999988888765 7
Q ss_pred CcEeEEeccc-----CCCCCCCccchhhhhHHHHHHHHHHHhhhCC--CccEEEEeccceeeecCCCCCCCCeeeecCCC
Q 023515 82 CDGVCHTASP-----FYHDAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWF 154 (281)
Q Consensus 82 ~d~Vih~a~~-----~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~ 154 (281)
+|++|||||. +.+...+.|+..+++|+.+++.+.+++.+++ +..++|++||..+..+.+
T Consensus 76 iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInisS~~~~~~~~-------------- 141 (247)
T 3ged_A 76 IDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIASTRAFQSEP-------------- 141 (247)
T ss_dssp CCEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGTSCCT--------------
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEeecccccCCC--------------
Confidence 8999999985 2233456688999999999999999998753 347899999987765321
Q ss_pred CChhhhccCCchhhhhHHHHHHHHHHHHHhc--CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCcccee
Q 023515 155 SDPEVCKQSELWYPLSKTLAEDAAWKFAKEK--SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVN 232 (281)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 232 (281)
....|+.||.+...+.+.++.++ ++++++|.||.|.++...... .+.....| ...+..
T Consensus 142 --------~~~~Y~asKaal~~ltk~lA~ela~~IrVN~I~PG~i~t~~~~~~~-------~~~~~~~P-----l~R~g~ 201 (247)
T 3ged_A 142 --------DSEAYASAKGGIVALTHALAMSLGPDVLVNCIAPGWINVTEQQEFT-------QEDCAAIP-----AGKVGT 201 (247)
T ss_dssp --------TCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCCCC---CC-------HHHHHTST-----TSSCBC
T ss_pred --------CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEecCcCCCCCcHHHH-------HHHHhcCC-----CCCCcC
Confidence 12459999999999999998875 799999999999877533211 12222211 123679
Q ss_pred HHHHHHHHHHhhcCCCCCccEEEecCCCC
Q 023515 233 VKDVANAHIQAFEVPSANGRYCLVERVSH 261 (281)
Q Consensus 233 ~~D~a~~i~~~~~~~~~~g~~~~~~~~~t 261 (281)
++|+|.++++++....-.|+.+..++.+|
T Consensus 202 pediA~~v~fL~s~~~iTG~~i~VDGG~s 230 (247)
T 3ged_A 202 PKDISNMVLFLCQQDFITGETIIVDGGMS 230 (247)
T ss_dssp HHHHHHHHHHHHHCSSCCSCEEEESTTGG
T ss_pred HHHHHHHHHHHHhCCCCCCCeEEECcCHH
Confidence 99999999999986555776665554443
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-29 Score=208.19 Aligned_cols=232 Identities=18% Similarity=0.160 Sum_probs=164.5
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC---------cchhhhhhh-ccCCCCcEEEEEcCCCCcCcH
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND---------PKKTRHLLA-LDGASERLQLFKANLLEEGSF 75 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~---------~~~~~~~~~-~~~~~~~~~~~~~D~~~~~~~ 75 (281)
.+++|++|||||+|+||++++++|+++|++|++++|+... .+.+..... ......++.++++|++|++++
T Consensus 10 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v 89 (278)
T 3sx2_A 10 PLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESL 89 (278)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHH
Confidence 4678999999999999999999999999999999987321 112221111 111125789999999999998
Q ss_pred HHHhc-------CCcEeEEecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCC----CccEEEEeccceeeecCCCCC
Q 023515 76 DSIVD-------GCDGVCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFP----SIKRVVLTSSMAAVLNTGKPR 143 (281)
Q Consensus 76 ~~~~~-------~~d~Vih~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~~~v~~SS~~~~~~~~~~~ 143 (281)
+++++ ++|++|||||..... ..+.|+..+++|+.++.++++++.+.+ ..++||++||..++.+...
T Consensus 90 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~-- 167 (278)
T 3sx2_A 90 SAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGVGS-- 167 (278)
T ss_dssp HHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCCC--
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHHhcCCCcc--
Confidence 88876 789999999974322 345677999999999999999988752 2468999999877653210
Q ss_pred CCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHH-hC
Q 023515 144 TPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLI-KG 219 (281)
Q Consensus 144 ~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~-~~ 219 (281)
..| ....|+.||++.+.+++.++.++ |+++++++||.|++|..... .....+.... ..
T Consensus 168 -----------~~~-----~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~--~~~~~~~~~~~~~ 229 (278)
T 3sx2_A 168 -----------ADP-----GSVGYVAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVETPMINNE--FTREWLAKMAAAT 229 (278)
T ss_dssp -----------SSH-----HHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSH--HHHHHHHHHHHHC
T ss_pred -----------CCC-----CchHhHHHHHHHHHHHHHHHHHHhccCcEEEEEecCCccCccchhh--hHHHHHhhccchh
Confidence 001 12459999999999999998765 79999999999999874421 1111222211 11
Q ss_pred C--CCCC-CCCccceeHHHHHHHHHHhhcCCC--CCcc-EEEec
Q 023515 220 A--QTYP-NVTFGWVNVKDVANAHIQAFEVPS--ANGR-YCLVE 257 (281)
Q Consensus 220 ~--~~~~-~~~~~~i~~~D~a~~i~~~~~~~~--~~g~-~~~~~ 257 (281)
. ...+ .....+++++|+|+++++++.... ..|. +++.|
T Consensus 230 ~~~~~~~~~~p~~~~~p~dvA~~v~~l~s~~~~~itG~~i~vdG 273 (278)
T 3sx2_A 230 DTPGAMGNAMPVEVLAPEDVANAVAWLVSDQARYITGVTLPVDA 273 (278)
T ss_dssp C--CTTSCSSSCSSBCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred hhhhhhhhhcCcCcCCHHHHHHHHHHHhCcccccccCCEEeECC
Confidence 1 1111 222678899999999999997543 3564 44443
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=205.85 Aligned_cols=224 Identities=12% Similarity=-0.009 Sum_probs=165.6
Q ss_pred chhccCCCeEEEeCCch--HHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc
Q 023515 3 SVAAAAGKVVCVTGASG--YIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (281)
Q Consensus 3 ~~~~~~~~~ilItGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 80 (281)
.|+.+++|+++||||+| +||++++++|+++|++|++++|+....+.+..+.... ..+.++++|++|.++++++++
T Consensus 24 ~~~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~ 100 (296)
T 3k31_A 24 TGMLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESL---GVKLTVPCDVSDAESVDNMFK 100 (296)
T ss_dssp CCCTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHH---TCCEEEECCTTCHHHHHHHHH
T ss_pred chhccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc---CCeEEEEcCCCCHHHHHHHHH
Confidence 34456789999999997 9999999999999999999999865444333332222 246889999999998888876
Q ss_pred -------CCcEeEEecccCC---------CCCCCccchhhhhHHHHHHHHHHHhhhCCC-ccEEEEeccceeeecCCCCC
Q 023515 81 -------GCDGVCHTASPFY---------HDAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAVLNTGKPR 143 (281)
Q Consensus 81 -------~~d~Vih~a~~~~---------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~ 143 (281)
++|++|||||... ....+.|+..+++|+.++.++++++.+.+. .++||++||..++.+.+
T Consensus 101 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~~~~~--- 177 (296)
T 3k31_A 101 VLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAEKVVP--- 177 (296)
T ss_dssp HHHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTSCCT---
T ss_pred HHHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhccCCC---
Confidence 6899999998643 233455778999999999999999998643 46899999987764221
Q ss_pred CCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC
Q 023515 144 TPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA 220 (281)
Q Consensus 144 ~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~ 220 (281)
....|+.||++.+.+++.++.++ |+++++|+||.|.++..... ..............
T Consensus 178 -------------------~~~~Y~asKaal~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~-~~~~~~~~~~~~~~ 237 (296)
T 3k31_A 178 -------------------HYNVMGVCKAALEASVKYLAVDLGKQQIRVNAISAGPVRTLASSGI-SDFHYILTWNKYNS 237 (296)
T ss_dssp -------------------TTTHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCCSSCCSC-HHHHHHHHHHHHHS
T ss_pred -------------------CchhhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEECCCcCchhhcc-cchHHHHHHHHhcC
Confidence 12459999999999999998875 89999999999999864321 11111222222221
Q ss_pred CCCCCCCccceeHHHHHHHHHHhhcCCC--CCc-cEEEec
Q 023515 221 QTYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (281)
Q Consensus 221 ~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~ 257 (281)
+ ...+..++|+|+++++++.... ..| .+++.|
T Consensus 238 p-----~~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdG 272 (296)
T 3k31_A 238 P-----LRRNTTLDDVGGAALYLLSDLGRGTTGETVHVDC 272 (296)
T ss_dssp T-----TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred C-----CCCCCCHHHHHHHHHHHcCCccCCccCCEEEECC
Confidence 1 2347799999999999998643 356 445543
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.7e-29 Score=203.14 Aligned_cols=219 Identities=17% Similarity=0.155 Sum_probs=159.6
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEc-CCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVR-DPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
+++|+++||||+|+||++++++|+++|++|++++| +.++.+.+.+..... ..++.++++|++|+++++++++
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (246)
T 2uvd_A 2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKL--GSDAIAVRADVANAEDVTNMVKQTVDV 79 (246)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999 443333322222111 2468899999999998888776
Q ss_pred --CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 --~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|+||||||.... ...+.|+..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 149 (246)
T 2uvd_A 80 FGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIVNIASVVGVTGNP---------- 149 (246)
T ss_dssp HSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCT----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCHHhcCCCC----------
Confidence 79999999996332 2344567899999999999988887642 457999999987765221
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
....|+.+|.+.+.+++.++.+ .|+++++++||.+.++....... ..........+ .
T Consensus 150 ------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~---~~~~~~~~~~p-----~ 209 (246)
T 2uvd_A 150 ------------GQANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIATDMTDVLDE---NIKAEMLKLIP-----A 209 (246)
T ss_dssp ------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCSSCCCT---THHHHHHHTCT-----T
T ss_pred ------------CCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeccccCcchhhcCH---HHHHHHHhcCC-----C
Confidence 1245999999999999988875 38999999999999886432111 11122222211 2
Q ss_pred ccceeHHHHHHHHHHhhcCCC--CCcc-EEEec
Q 023515 228 FGWVNVKDVANAHIQAFEVPS--ANGR-YCLVE 257 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~--~~g~-~~~~~ 257 (281)
..+++++|+|+++++++.... ..|. +++.|
T Consensus 210 ~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdg 242 (246)
T 2uvd_A 210 AQFGEAQDIANAVTFFASDQSKYITGQTLNVDG 242 (246)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCCcCHHHHHHHHHHHcCchhcCCCCCEEEECc
Confidence 348899999999999997543 2464 44443
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.96 E-value=8e-29 Score=204.85 Aligned_cols=229 Identities=15% Similarity=0.085 Sum_probs=158.5
Q ss_pred hhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC-cchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--
Q 023515 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-- 80 (281)
Q Consensus 4 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-- 80 (281)
|+.+++|++|||||+|+||++++++|+++|++|++++++..+ .......... ...++.++++|++|.++++++++
T Consensus 3 ~~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~ 80 (259)
T 3edm_A 3 LQRFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEK--LGRSALAIKADLTNAAEVEAAISAA 80 (259)
T ss_dssp -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHT--TTSCCEEEECCTTCHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh--cCCceEEEEcCCCCHHHHHHHHHHH
Confidence 445779999999999999999999999999999999665432 2222222211 12468899999999998888776
Q ss_pred -----CCcEeEEecccC-C-----CCCCCccchhhhhHHHHHHHHHHHhhhCCC-ccEEEEeccceee-ecCCCCCCCCe
Q 023515 81 -----GCDGVCHTASPF-Y-----HDAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAV-LNTGKPRTPDV 147 (281)
Q Consensus 81 -----~~d~Vih~a~~~-~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~-~~~~~~~~~~~ 147 (281)
++|++|||||.. . ....+.|+..+++|+.++.++++++.+.+. .+++|++||..++ .+.+
T Consensus 81 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------- 153 (259)
T 3edm_A 81 ADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAGRDGGGP------- 153 (259)
T ss_dssp HHHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHCCST-------
T ss_pred HHHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHhccCCCC-------
Confidence 789999999853 1 222344678999999999999999998742 3589999998776 2111
Q ss_pred eeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhcC--CcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCC
Q 023515 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKS--IDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (281)
Q Consensus 148 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g--~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (281)
....|+.||.+.+.+++.++.+++ +++++++||.+.++....... ......... ..
T Consensus 154 ---------------~~~~Y~asKaa~~~l~~~la~e~~~~I~vn~v~PG~v~T~~~~~~~~--~~~~~~~~~-----~~ 211 (259)
T 3edm_A 154 ---------------GALAYATSKGAVMTFTRGLAKEVGPKIRVNAVCPGMISTTFHDTFTK--PEVRERVAG-----AT 211 (259)
T ss_dssp ---------------TCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCC--------------------------
T ss_pred ---------------CcHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCcCcccccccC--hHHHHHHHh-----cC
Confidence 124599999999999999988753 899999999999876432110 011111111 11
Q ss_pred CCccceeHHHHHHHHHHhhcCCCC--Cc-cEEEecCCCCHH
Q 023515 226 VTFGWVNVKDVANAHIQAFEVPSA--NG-RYCLVERVSHYS 263 (281)
Q Consensus 226 ~~~~~i~~~D~a~~i~~~~~~~~~--~g-~~~~~~~~~t~~ 263 (281)
....+.+++|+|+++++++..... .| .+++.|+...+.
T Consensus 212 p~~r~~~pedva~~v~~L~s~~~~~itG~~i~vdGg~~~~~ 252 (259)
T 3edm_A 212 SLKREGSSEDVAGLVAFLASDDAAYVTGACYDINGGVLFSE 252 (259)
T ss_dssp ---CCBCHHHHHHHHHHHHSGGGTTCCSCEEEESBCSSBC-
T ss_pred CCCCCcCHHHHHHHHHHHcCccccCccCCEEEECCCcCCCC
Confidence 234477999999999999976533 46 556666544443
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-29 Score=201.79 Aligned_cols=194 Identities=16% Similarity=0.123 Sum_probs=150.9
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---CCcEeE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---GCDGVC 86 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---~~d~Vi 86 (281)
|+|+||||+|+||++++++|+++ +|++++|++.+.+.+.... .. .++++|++|++++.++++ ++|+||
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~~~~~~~~~~------~~-~~~~~D~~~~~~~~~~~~~~~~id~vi 71 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH--DLLLSGRRAGALAELAREV------GA-RALPADLADELEAKALLEEAGPLDLLV 71 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS--EEEEECSCHHHHHHHHHHH------TC-EECCCCTTSHHHHHHHHHHHCSEEEEE
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHHHHHHHHHhc------cC-cEEEeeCCCHHHHHHHHHhcCCCCEEE
Confidence 57999999999999999999998 9999999764433322211 11 788999999999999988 899999
Q ss_pred EecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhc
Q 023515 87 HTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCK 161 (281)
Q Consensus 87 h~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 161 (281)
|+||.... ...+.++..+++|+.++.++++++++. +.++||++||..++.+.+
T Consensus 72 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv~~sS~~~~~~~~--------------------- 129 (207)
T 2yut_A 72 HAVGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQ-KGARAVFFGAYPRYVQVP--------------------- 129 (207)
T ss_dssp ECCCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEE-EEEEEEEECCCHHHHSST---------------------
T ss_pred ECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhc-CCcEEEEEcChhhccCCC---------------------
Confidence 99986332 234567789999999999999999765 678999999987764211
Q ss_pred cCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeHHHHHH
Q 023515 162 QSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVAN 238 (281)
Q Consensus 162 ~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~ 238 (281)
....|+.+|.+.|.+++.++.+ .|++++++|||.++|+.... . +...+.+++++|+|+
T Consensus 130 -~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~t~~~~~-------------~-----~~~~~~~~~~~dva~ 190 (207)
T 2yut_A 130 -GFAAYAAAKGALEAYLEAARKELLREGVHLVLVRLPAVATGLWAP-------------L-----GGPPKGALSPEEAAR 190 (207)
T ss_dssp -TBHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEECCCCBCSGGGGG-------------G-----TSCCTTCBCHHHHHH
T ss_pred -CcchHHHHHHHHHHHHHHHHHHHhhhCCEEEEEecCcccCCCccc-------------c-----CCCCCCCCCHHHHHH
Confidence 1245999999999999999877 59999999999999875110 1 123467999999999
Q ss_pred HHHHhhcCCCCCccE
Q 023515 239 AHIQAFEVPSANGRY 253 (281)
Q Consensus 239 ~i~~~~~~~~~~g~~ 253 (281)
+++++++++....++
T Consensus 191 ~~~~~~~~~~~~~~~ 205 (207)
T 2yut_A 191 KVLEGLFREPVPALL 205 (207)
T ss_dssp HHHHHHC--CCCSCC
T ss_pred HHHHHHhCCCCcccc
Confidence 999999987654433
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-29 Score=209.29 Aligned_cols=224 Identities=14% Similarity=0.119 Sum_probs=165.3
Q ss_pred hhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 4 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
|+.+++|++|||||+|+||++++++|+++|++|++++|+.++...+.+..... ..++.++++|++|.+++.++++
T Consensus 21 ~~~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~ 98 (271)
T 4ibo_A 21 IFDLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNV--GHDAEAVAFDVTSESEIIEAFARLD 98 (271)
T ss_dssp GGCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHT--TCCEEECCCCTTCHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999876544433332222 2478999999999999888876
Q ss_pred ----CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCee
Q 023515 81 ----GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVV 148 (281)
Q Consensus 81 ----~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (281)
++|+||||||... ....+.|+..+++|+.++.++++++.+.+ +.++||++||..+..+.+
T Consensus 99 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iV~isS~~~~~~~~-------- 170 (271)
T 4ibo_A 99 EQGIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYGKIVNIGSLTSELARA-------- 170 (271)
T ss_dssp HHTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSBCT--------
T ss_pred HHCCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCCCCC--------
Confidence 7899999999632 22345577899999999999999988752 446899999987764221
Q ss_pred eecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCC
Q 023515 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (281)
Q Consensus 149 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (281)
....|+.+|.+.+.+++.++.+ .|+++++++||.+.++...... .............
T Consensus 171 --------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~-~~~~~~~~~~~~~----- 230 (271)
T 4ibo_A 171 --------------TVAPYTVAKGGIKMLTRAMAAEWAQYGIQANAIGPGYMLTDMNQALI-DNPEFDAWVKART----- 230 (271)
T ss_dssp --------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHH-HCHHHHHHHHHHS-----
T ss_pred --------------CchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeccEeCcchhhcc-cCHHHHHHHHhcC-----
Confidence 1245999999999999999887 4899999999999987532100 0011222222222
Q ss_pred CCccceeHHHHHHHHHHhhcCCC--CCc-cEEEec
Q 023515 226 VTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (281)
Q Consensus 226 ~~~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~ 257 (281)
....+.+++|+|+++++++.... ..| .+++.|
T Consensus 231 p~~r~~~pedva~~v~~L~s~~~~~itG~~i~vdG 265 (271)
T 4ibo_A 231 PAKRWGKPQELVGTAVFLSASASDYVNGQIIYVDG 265 (271)
T ss_dssp TTCSCBCGGGGHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCCCCcCHHHHHHHHHHHhCccccCCCCcEEEECC
Confidence 12347899999999999987543 346 455544
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-29 Score=207.72 Aligned_cols=226 Identities=15% Similarity=0.103 Sum_probs=162.8
Q ss_pred hhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 4 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
|+.+++|+++||||+|+||++++++|+++|++|++++|+.++.+.+.+..... ..++.++++|++|+++++++++
T Consensus 17 m~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~ 94 (277)
T 2rhc_B 17 MATQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA--GVEADGRTCDVRSVPEIEALVAAVV 94 (277)
T ss_dssp TCCTTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHH
Confidence 43466899999999999999999999999999999999865443332222111 2468899999999998888776
Q ss_pred ----CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhC--C---CccEEEEeccceeeecCCCCCCCC
Q 023515 81 ----GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF--P---SIKRVVLTSSMAAVLNTGKPRTPD 146 (281)
Q Consensus 81 ----~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~--~---~~~~~v~~SS~~~~~~~~~~~~~~ 146 (281)
++|+||||||.... ...+.|+..+++|+.++.++++++.+. + +.++||++||..++.+.+
T Consensus 95 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~------ 168 (277)
T 2rhc_B 95 ERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVV------ 168 (277)
T ss_dssp HHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECCGGGTSCCT------
T ss_pred HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECccccccCCC------
Confidence 68999999986332 223456789999999999999998875 2 457999999987654211
Q ss_pred eeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCc--c------HHHHHH
Q 023515 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNT--S------AAAVLS 215 (281)
Q Consensus 147 ~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~--~------~~~~~~ 215 (281)
....|+.+|.+.+.+++.++.++ |+++++++||.++++........ . ......
T Consensus 169 ----------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~ 232 (277)
T 2rhc_B 169 ----------------HAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDR 232 (277)
T ss_dssp ----------------TCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEECSBCSHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred ----------------CCccHHHHHHHHHHHHHHHHHHHHHhCcEEEEEecCcCcCchhhhhhhhcccccccchHHHHHH
Confidence 12459999999999999998764 79999999999998742110000 0 011111
Q ss_pred HHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCc-cEEEecC
Q 023515 216 LIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVER 258 (281)
Q Consensus 216 ~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~~ 258 (281)
..... ....+++++|+|+++++++.... ..| .+++.|+
T Consensus 233 ~~~~~-----p~~r~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdGG 273 (277)
T 2rhc_B 233 ITARV-----PIGRYVQPSEVAEMVAYLIGPGAAAVTAQALNVCGG 273 (277)
T ss_dssp HHHHS-----TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHhcC-----CCCCCcCHHHHHHHHHHHhCchhcCCCCcEEEECCC
Confidence 11111 12458899999999999997643 245 5555544
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=7.7e-29 Score=203.56 Aligned_cols=219 Identities=16% Similarity=0.121 Sum_probs=165.1
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++|+++||||+|+||++++++|+++|++|++++|+.++.+.+....... ..++.++++|++|+++++++++
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (247)
T 3lyl_A 3 LNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEK--GFKARGLVLNISDIESIQNFFAEIKAEN 80 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 56899999999999999999999999999999999876555444433222 2478999999999998888775
Q ss_pred -CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 -~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
++|+||||||.... ...+.++..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 81 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~----------- 149 (247)
T 3lyl_A 81 LAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWGRIISIGSVVGSAGNP----------- 149 (247)
T ss_dssp CCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCT-----------
T ss_pred CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhccCCC-----------
Confidence 57999999997432 2344567899999999999999987742 446899999987765221
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCc
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (281)
....|+.+|.+.+.+++.++.+ .|+++++++||.+.++...... .. ........ ....
T Consensus 150 -----------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~---~~-~~~~~~~~----~~~~ 210 (247)
T 3lyl_A 150 -----------GQTNYCAAKAGVIGFSKSLAYEVASRNITVNVVAPGFIATDMTDKLT---DE-QKSFIATK----IPSG 210 (247)
T ss_dssp -----------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTTSC---HH-HHHHHHTT----STTC
T ss_pred -----------CcHHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCcEecccchhcc---HH-HHHHHhhc----CCCC
Confidence 1245999999999999999886 4899999999999988644321 12 22222221 1234
Q ss_pred cceeHHHHHHHHHHhhcCCCC--Cc-cEEEec
Q 023515 229 GWVNVKDVANAHIQAFEVPSA--NG-RYCLVE 257 (281)
Q Consensus 229 ~~i~~~D~a~~i~~~~~~~~~--~g-~~~~~~ 257 (281)
.+.+++|+|+++++++..... .| .+++.|
T Consensus 211 ~~~~~~dva~~i~~l~s~~~~~~tG~~i~vdg 242 (247)
T 3lyl_A 211 QIGEPKDIAAAVAFLASEEAKYITGQTLHVNG 242 (247)
T ss_dssp CCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCcCHHHHHHHHHHHhCCCcCCccCCEEEECC
Confidence 588999999999999976432 45 455544
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=203.57 Aligned_cols=214 Identities=14% Similarity=0.115 Sum_probs=153.2
Q ss_pred hccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 5 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
+.+++|++|||||+|+||++++++|+++|++|++++|+.++... ... . .++.++.+|++|.++++++++
T Consensus 23 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~--~~~-~----~~~~~~~~Dv~~~~~v~~~~~~~~~ 95 (260)
T 3gem_A 23 MTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVT--ELR-Q----AGAVALYGDFSCETGIMAFIDLLKT 95 (260)
T ss_dssp ----CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHH--HHH-H----HTCEEEECCTTSHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHH--HHH-h----cCCeEEECCCCCHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999998754321 111 1 147899999999998888775
Q ss_pred ---CCcEeEEecccCCCC----CCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 ---GCDGVCHTASPFYHD----AKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 ---~~d~Vih~a~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|+||||||..... ..+.|+..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 96 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~---------- 165 (260)
T 3gem_A 96 QTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISDDVTRKGSS---------- 165 (260)
T ss_dssp HCSCCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGTCCS----------
T ss_pred hcCCCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCCCC----------
Confidence 689999999964321 123456899999999999999997642 457899999987765221
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc--CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCc
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK--SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (281)
....|+.||++.+.+++.++.++ ++++++++||.+.++..... .......... ...
T Consensus 166 ------------~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~t~~~~~~-----~~~~~~~~~~-----p~~ 223 (260)
T 3gem_A 166 ------------KHIAYCATKAGLESLTLSFAARFAPLVKVNGIAPALLMFQPKDDA-----AYRANALAKS-----ALG 223 (260)
T ss_dssp ------------SCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECTTCC--------------------C-----CSC
T ss_pred ------------CcHhHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccCCCCCH-----HHHHHHHhcC-----CCC
Confidence 12459999999999999999876 59999999999988753211 1111111111 123
Q ss_pred cceeHHHHHHHHHHhhcCCCCCc-cEEEec
Q 023515 229 GWVNVKDVANAHIQAFEVPSANG-RYCLVE 257 (281)
Q Consensus 229 ~~i~~~D~a~~i~~~~~~~~~~g-~~~~~~ 257 (281)
.+..++|+|++++++++.....| .+++.|
T Consensus 224 r~~~~edva~~v~~L~~~~~itG~~i~vdG 253 (260)
T 3gem_A 224 IEPGAEVIYQSLRYLLDSTYVTGTTLTVNG 253 (260)
T ss_dssp CCCCTHHHHHHHHHHHHCSSCCSCEEEEST
T ss_pred CCCCHHHHHHHHHHHhhCCCCCCCEEEECC
Confidence 36689999999999997665567 455543
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-29 Score=208.48 Aligned_cols=223 Identities=20% Similarity=0.132 Sum_probs=161.5
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEc-CCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVR-DPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
+++|+|+||||+|+||++++++|+++|++|++++| +.++.+.+....... ..++.++++|++|++++.++++
T Consensus 19 ~~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 96 (274)
T 1ja9_A 19 LAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKL--GAQGVAIQADISKPSEVVALFDKAVSH 96 (274)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 56889999999999999999999999999999999 433322222221111 2468899999999998888876
Q ss_pred --CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCCC-ccEEEEeccceee-ecCCCCCCCCeeeec
Q 023515 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAV-LNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 --~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~-~~~~~~~~~~~~~~e 151 (281)
++|+||||||.... ...+.++..+++|+.++.++++++.+.+. .++||++||..++ .+.+
T Consensus 97 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~~~----------- 165 (274)
T 1ja9_A 97 FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMTGIP----------- 165 (274)
T ss_dssp HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCCSCC-----------
T ss_pred cCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEcChHhccCCCC-----------
Confidence 78999999986432 22344568899999999999999987532 2689999998776 2110
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCC-------C-C-Ccc-HHHHHHHHh
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQP-------T-L-NTS-AAAVLSLIK 218 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~-------~-~-~~~-~~~~~~~~~ 218 (281)
....|+.+|.+.|.+++.++.++ |++++++|||.++++.... . . ... .........
T Consensus 166 -----------~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (274)
T 1ja9_A 166 -----------NHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLAN 234 (274)
T ss_dssp -----------SCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHH
T ss_pred -----------CCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccchhcccccccccccccCchHHHHHHHHh
Confidence 12459999999999999988775 8999999999999874220 0 0 011 122222222
Q ss_pred CCCCCCCCCccceeHHHHHHHHHHhhcCCCC--Cc-cEEEecC
Q 023515 219 GAQTYPNVTFGWVNVKDVANAHIQAFEVPSA--NG-RYCLVER 258 (281)
Q Consensus 219 ~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~~--~g-~~~~~~~ 258 (281)
+. ....+++++|+|+++++++..+.. .| .|++.++
T Consensus 235 ~~-----~~~~~~~~~dva~~i~~l~~~~~~~~~G~~~~v~gG 272 (274)
T 1ja9_A 235 MN-----PLKRIGYPADIGRAVSALCQEESEWINGQVIKLTGG 272 (274)
T ss_dssp TS-----TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cC-----CCCCccCHHHHHHHHHHHhCcccccccCcEEEecCC
Confidence 22 235689999999999999986432 45 6676654
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=203.39 Aligned_cols=221 Identities=14% Similarity=0.075 Sum_probs=161.6
Q ss_pred cCCCeEEEeCCc--hHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 7 AAGKVVCVTGAS--GYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 7 ~~~~~ilItGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
+++|+++||||+ |+||++++++|+++|++|++++|+......+.++.... ..+.++++|++|+++++++++
T Consensus 6 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~ 82 (261)
T 2wyu_A 6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEAL---GGALLFRADVTQDEELDALFAGVKE 82 (261)
T ss_dssp CTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHHHHT---TCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc---CCcEEEECCCCCHHHHHHHHHHHHH
Confidence 568999999999 99999999999999999999999864212222222111 237889999999998888776
Q ss_pred ---CCcEeEEecccCC---------CCCCCccchhhhhHHHHHHHHHHHhhhCCC-ccEEEEeccceeeecCCCCCCCCe
Q 023515 81 ---GCDGVCHTASPFY---------HDAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAVLNTGKPRTPDV 147 (281)
Q Consensus 81 ---~~d~Vih~a~~~~---------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~ 147 (281)
++|+||||||... ....+.|+..+++|+.++.++++++.+.+. .++||++||..++.+.+
T Consensus 83 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~------- 155 (261)
T 2wyu_A 83 AFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVVP------- 155 (261)
T ss_dssp HHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTSBCT-------
T ss_pred HcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEecccccCCCC-------
Confidence 7899999999643 223455678999999999999999998742 35899999976654211
Q ss_pred eeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCC
Q 023515 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP 224 (281)
Q Consensus 148 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (281)
....|+.||.+.+.+++.++.++ |+++++++||.+++|..... ..............+
T Consensus 156 ---------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~-~~~~~~~~~~~~~~p--- 216 (261)
T 2wyu_A 156 ---------------KYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSI-PGFTKMYDRVAQTAP--- 216 (261)
T ss_dssp ---------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCTGGGGC-TTHHHHHHHHHHHST---
T ss_pred ---------------CchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCCCcCchhhhc-cccHHHHHHHHhcCC---
Confidence 12459999999999999998775 89999999999999864321 111222222222221
Q ss_pred CCCccceeHHHHHHHHHHhhcCCCC--Cc-cEEEecC
Q 023515 225 NVTFGWVNVKDVANAHIQAFEVPSA--NG-RYCLVER 258 (281)
Q Consensus 225 ~~~~~~i~~~D~a~~i~~~~~~~~~--~g-~~~~~~~ 258 (281)
...+.+++|+|+++++++..... .| .+++.++
T Consensus 217 --~~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG 251 (261)
T 2wyu_A 217 --LRRNITQEEVGNLGLFLLSPLASGITGEVVYVDAG 251 (261)
T ss_dssp --TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred --CCCCCCHHHHHHHHHHHcChhhcCCCCCEEEECCC
Confidence 23477999999999999975332 45 5566543
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-29 Score=211.37 Aligned_cols=220 Identities=16% Similarity=0.095 Sum_probs=156.8
Q ss_pred hccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 5 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
..+++|+||||||+|+||++++++|+++|++|++++|+.++...+....... ..++.++++|++|.++++++++
T Consensus 27 ~~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~ 104 (301)
T 3tjr_A 27 SGFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQ--GFDAHGVVCDVRHLDEMVRLADEAFR 104 (301)
T ss_dssp CCSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred hccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCceEEEEccCCCHHHHHHHHHHHHH
Confidence 3467899999999999999999999999999999999876554443332222 2478999999999998888776
Q ss_pred ---CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---C-ccEEEEeccceeeecCCCCCCCCee
Q 023515 81 ---GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---S-IKRVVLTSSMAAVLNTGKPRTPDVV 148 (281)
Q Consensus 81 ---~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~-~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (281)
++|+||||||... ....+.++..+++|+.|+.++++++.+.+ + .++||++||..++.+.+
T Consensus 105 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------- 176 (301)
T 3tjr_A 105 LLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLVPNA-------- 176 (301)
T ss_dssp HHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCT--------
T ss_pred hCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCCCC--------
Confidence 7899999999632 22345567899999999999999987642 2 46899999987765221
Q ss_pred eecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCC--
Q 023515 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY-- 223 (281)
Q Consensus 149 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~-- 223 (281)
....|+.||.+.+.+++.++.++ |+++++++||.|.++......................+
T Consensus 177 --------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (301)
T 3tjr_A 177 --------------GLGTYGVAKYGVVGLAETLAREVKPNGIGVSVLCPMVVETKLVSNSERIRGADYGMSATPEGAFGP 242 (301)
T ss_dssp --------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEECCSCCCSSHHHHHHHHC----------------
T ss_pred --------------CchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCccccccccccccccchhhccccChhhhccc
Confidence 12459999999999999988764 89999999999988642100000000000000000011
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCC
Q 023515 224 PNVTFGWVNVKDVANAHIQAFEVPS 248 (281)
Q Consensus 224 ~~~~~~~i~~~D~a~~i~~~~~~~~ 248 (281)
......+++++|+|++++.+++++.
T Consensus 243 ~~~~~~~~~pedvA~~i~~~l~~~~ 267 (301)
T 3tjr_A 243 LPTQDESVSADDVARLTADAILANR 267 (301)
T ss_dssp ------CCCHHHHHHHHHHHHHHTC
T ss_pred cccccCCCCHHHHHHHHHHHHhcCC
Confidence 1234568999999999999998765
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-28 Score=202.89 Aligned_cols=222 Identities=15% Similarity=0.126 Sum_probs=157.2
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHh-------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV------- 79 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~------- 79 (281)
+++|+++||||+|+||++++++|+++|++|++++|+.++.+.+....... ..++.++++|++|++++++++
T Consensus 19 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 96 (273)
T 1ae1_A 19 LKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREK--GLNVEGSVCDLLSRTERDKLMQTVAHVF 96 (273)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 46789999999999999999999999999999999865443332222111 246889999999998888776
Q ss_pred -cCCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 80 -DGCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 80 -~~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
.++|++|||||.... ...+.|+..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 97 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~---------- 166 (273)
T 1ae1_A 97 DGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSALP---------- 166 (273)
T ss_dssp TSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSCCT----------
T ss_pred CCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHhhcCCCC----------
Confidence 468999999996322 2234567889999999999999997532 457999999987764211
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCc---cHHHHHHHHhCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNT---SAAAVLSLIKGAQTYP 224 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~---~~~~~~~~~~~~~~~~ 224 (281)
....|+.+|.+.+.+++.++.++ |+++++++||.+++|........ ............|
T Consensus 167 ------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~p--- 231 (273)
T 1ae1_A 167 ------------SVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTP--- 231 (273)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHHHHST---
T ss_pred ------------CcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCchhhhhhhcccCcHHHHHHHHhcCC---
Confidence 12459999999999999998765 89999999999999864321110 1111222222211
Q ss_pred CCCccceeHHHHHHHHHHhhcCCC--CCcc-EEEec
Q 023515 225 NVTFGWVNVKDVANAHIQAFEVPS--ANGR-YCLVE 257 (281)
Q Consensus 225 ~~~~~~i~~~D~a~~i~~~~~~~~--~~g~-~~~~~ 257 (281)
...+.+++|+|+++++++.... ..|. +++.|
T Consensus 232 --~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdG 265 (273)
T 1ae1_A 232 --MGRAGKPQEVSALIAFLCFPAASYITGQIIWADG 265 (273)
T ss_dssp --TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred --CCCCcCHHHHHHHHHHHhCccccCcCCCEEEECC
Confidence 2347899999999999997543 2464 44443
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-28 Score=202.09 Aligned_cols=214 Identities=15% Similarity=0.082 Sum_probs=158.9
Q ss_pred hhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 4 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
|+.+++|+||||||+|+||++++++|+++|++|++++|+.++ ..++.++++|++|+++++++++
T Consensus 3 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-------------~~~~~~~~~Dl~~~~~v~~~~~~~~ 69 (264)
T 2dtx_A 3 FSDLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG-------------EAKYDHIECDVTNPDQVKASIDHIF 69 (264)
T ss_dssp CGGGTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC-------------SCSSEEEECCTTCHHHHHHHHHHHH
T ss_pred ccccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc-------------CCceEEEEecCCCHHHHHHHHHHHH
Confidence 455778999999999999999999999999999999998654 1357889999999998888776
Q ss_pred ----CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCee
Q 023515 81 ----GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVV 148 (281)
Q Consensus 81 ----~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (281)
++|+||||||.... ...+.|+..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 70 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------- 141 (264)
T 2dtx_A 70 KEYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQASIITK-------- 141 (264)
T ss_dssp HHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGTSCCT--------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCchhccCCC--------
Confidence 69999999996322 2334577899999999999999998742 457999999987654211
Q ss_pred eecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhcC--CcEEEEcCCcccCCCCCCCCC----ccH----HHHHHHHh
Q 023515 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKS--IDLVTINPAMVIGPLLQPTLN----TSA----AAVLSLIK 218 (281)
Q Consensus 149 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g--~~~~~irp~~v~g~~~~~~~~----~~~----~~~~~~~~ 218 (281)
....|+.||.+.+.+++.++.+++ +++++++||.+.++....... ... ........
T Consensus 142 --------------~~~~Y~~sK~a~~~~~~~la~e~~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (264)
T 2dtx_A 142 --------------NASAYVTSKHAVIGLTKSIALDYAPLLRCNAVCPATIDTPLVRKAAELEVGSDPMRIEKKISEWGH 207 (264)
T ss_dssp --------------TBHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCSHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred --------------CchhHHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCCCcCcchhhhhhcccccCchhhHHHHHHHHh
Confidence 124599999999999999988765 899999999998764211000 000 11111111
Q ss_pred CCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCc-cEEEec
Q 023515 219 GAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (281)
Q Consensus 219 ~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~ 257 (281)
.. ....+++++|+|+++++++.... ..| .+++.|
T Consensus 208 ~~-----p~~~~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdG 244 (264)
T 2dtx_A 208 EH-----PMQRIGKPQEVASAVAFLASREASFITGTCLYVDG 244 (264)
T ss_dssp HS-----TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred cC-----CCCCCcCHHHHHHHHHHHhCchhcCCCCcEEEECC
Confidence 11 12358899999999999997643 345 445544
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=8e-29 Score=205.44 Aligned_cols=224 Identities=16% Similarity=0.139 Sum_probs=164.1
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++|++|||||+|+||++++++|+++|++|++++|+.++.+.+....... ..++.++++|++|+++++++++
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 85 (264)
T 3ucx_A 8 LLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDT--GRRALSVGTDITDDAQVAHLVDETMKA 85 (264)
T ss_dssp TTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999876554443332222 2578999999999998888775
Q ss_pred --CCcEeEEecccCC------CCCCCccchhhhhHHHHHHHHHHHhhhCC--CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 --GCDGVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 --~~d~Vih~a~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|++|||||... ....+.|+..+++|+.++.++++++.+.+ ..++||++||..++.+.+
T Consensus 86 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 155 (264)
T 3ucx_A 86 YGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESKGAVVNVNSMVVRHSQA---------- 155 (264)
T ss_dssp TSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHTCEEEEECCGGGGCCCT----------
T ss_pred cCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEECcchhccCCC----------
Confidence 7899999997632 22335567889999999999999998752 126999999987765211
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCC--------ccHHHHHHHHhC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLN--------TSAAAVLSLIKG 219 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~--------~~~~~~~~~~~~ 219 (281)
....|+.||++.+.+++.++.+ .|+++++++||.|++|....... ...........+
T Consensus 156 ------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (264)
T 3ucx_A 156 ------------KYGAYKMAKSALLAMSQTLATELGEKGIRVNSVLPGYIWGGTLKSYFEHQAGKYGTSVEDIYNAAAAG 223 (264)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSCBSHHHHHHHHHHHHHTTCCHHHHHHHHHTT
T ss_pred ------------ccHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccccHHHHHHhhhhhcCCCHHHHHHHHhcc
Confidence 1245999999999999999887 58999999999999875221000 001111112221
Q ss_pred CCCCCCCCccceeHHHHHHHHHHhhcCCC--CCc-cEEEecC
Q 023515 220 AQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVER 258 (281)
Q Consensus 220 ~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~~ 258 (281)
.....+.+++|+|+++++++.... ..| .+++.|+
T Consensus 224 -----~p~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG 260 (264)
T 3ucx_A 224 -----SDLKRLPTEDEVASAILFMASDLASGITGQALDVNCG 260 (264)
T ss_dssp -----SSSSSCCBHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred -----CCcccCCCHHHHHHHHHHHcCccccCCCCCEEEECCC
Confidence 123458899999999999997543 346 4555443
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-28 Score=203.30 Aligned_cols=224 Identities=17% Similarity=0.092 Sum_probs=160.8
Q ss_pred hhccCCCeEEEeCCch-HHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--
Q 023515 4 VAAAAGKVVCVTGASG-YIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-- 80 (281)
Q Consensus 4 ~~~~~~~~ilItGatG-~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-- 80 (281)
|+.+++|+++||||+| +||++++++|+++|++|++++|+.++...+....... ...++.++++|++|.++++++++
T Consensus 17 ~~~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~Dl~~~~~v~~~~~~~ 95 (266)
T 3o38_A 17 HGLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADL-GLGRVEAVVCDVTSTEAVDALITQT 95 (266)
T ss_dssp CSTTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT-CSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhc-CCCceEEEEeCCCCHHHHHHHHHHH
Confidence 4456789999999997 6999999999999999999999876544433332221 12579999999999998888775
Q ss_pred -----CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC----CccEEEEeccceeeecCCCCCCCC
Q 023515 81 -----GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP----SIKRVVLTSSMAAVLNTGKPRTPD 146 (281)
Q Consensus 81 -----~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~~~v~~SS~~~~~~~~~~~~~~ 146 (281)
++|+||||||.... ...+.++..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 96 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~------ 169 (266)
T 3o38_A 96 VEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWRAQH------ 169 (266)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGTCCCT------
T ss_pred HHHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHcCCCC------
Confidence 68999999996332 2334567899999999999999998752 446899999987764211
Q ss_pred eeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCC
Q 023515 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY 223 (281)
Q Consensus 147 ~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~ 223 (281)
....|+.+|.+.+.+++.++.+ .|+++++++||.+.++....... .........
T Consensus 170 ----------------~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~--~~~~~~~~~----- 226 (266)
T 3o38_A 170 ----------------SQSHYAAAKAGVMALTRCSAIEAVEFGVRINAVSPSIARHKFLEKTSS--SELLDRLAS----- 226 (266)
T ss_dssp ----------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC------------------------
T ss_pred ----------------CCchHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCCcccchhhhccCc--HHHHHHHHh-----
Confidence 1245999999999999999887 58999999999999876332110 011111111
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCC--CCcc-EEEec
Q 023515 224 PNVTFGWVNVKDVANAHIQAFEVPS--ANGR-YCLVE 257 (281)
Q Consensus 224 ~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~-~~~~~ 257 (281)
......+.+++|+|+++++++.... ..|. +++.|
T Consensus 227 ~~~~~r~~~~~dva~~i~~l~s~~~~~~tG~~i~vdg 263 (266)
T 3o38_A 227 DEAFGRAAEPWEVAATIAFLASDYSSYMTGEVVSVSS 263 (266)
T ss_dssp CCTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESS
T ss_pred cCCcCCCCCHHHHHHHHHHHcCccccCccCCEEEEcC
Confidence 1223457899999999999998643 3564 44443
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-28 Score=203.72 Aligned_cols=216 Identities=19% Similarity=0.153 Sum_probs=159.7
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++|++|||||+|+||++++++|+++|++|++++|+.+....+.... ..++.++++|++|+++++++++
T Consensus 26 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 100 (277)
T 3gvc_A 26 DLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI-----GCGAAACRVDVSDEQQIIAMVDACVAA 100 (277)
T ss_dssp -CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-----CSSCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc-----CCcceEEEecCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999865444332221 2468899999999988888775
Q ss_pred --CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 --GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 --~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|++|||||... ....+.|+..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 101 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~~---------- 170 (277)
T 3gvc_A 101 FGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQVAVG---------- 170 (277)
T ss_dssp HSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCCT----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCCC----------
Confidence 7899999999632 22345577899999999999999998742 457899999987765211
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCC--------CCccHHHHHHHHhC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPT--------LNTSAAAVLSLIKG 219 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~--------~~~~~~~~~~~~~~ 219 (281)
....|+.+|.+.+.+++.++.+ .|+++++++||.|++|..... ............
T Consensus 171 ------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~-- 236 (277)
T 3gvc_A 171 ------------GTGAYGMSKAGIIQLSRITAAELRSSGIRSNTLLPAFVDTPMQQTAMAMFDGALGAGGARSMIARL-- 236 (277)
T ss_dssp ------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHTCC------CCHHHHHHHH--
T ss_pred ------------CchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCccCchHHHhhhcchhhHHHHhhhhhhhcc--
Confidence 1245999999999999998876 489999999999998742100 000000000111
Q ss_pred CCCCCCCCccceeHHHHHHHHHHhhcCCC--CCc-cEEEec
Q 023515 220 AQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (281)
Q Consensus 220 ~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~ 257 (281)
...+.+++|+|+++++++.... ..| .+++.|
T Consensus 237 -------~~r~~~pedvA~~v~~L~s~~a~~itG~~i~vdG 270 (277)
T 3gvc_A 237 -------QGRMAAPEEMAGIVVFLLSDDASMITGTTQIADG 270 (277)
T ss_dssp -------HSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred -------ccCCCCHHHHHHHHHHHcCCccCCccCcEEEECC
Confidence 1237899999999999997643 346 455544
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-29 Score=206.71 Aligned_cols=220 Identities=15% Similarity=0.103 Sum_probs=163.3
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++|++|||||+|+||++++++|+++|++|++++|+.+..+.+....... ..++.++++|++|.++++++++
T Consensus 25 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 102 (270)
T 3ftp_A 25 TLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQA--GLEGRGAVLNVNDATAVDALVESTLKE 102 (270)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH--TCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999999876544443332221 2467899999999998888776
Q ss_pred --CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 --~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|++|||||.... ...+.|+..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 103 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 172 (270)
T 3ftp_A 103 FGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGRIVNITSVVGSAGNP---------- 172 (270)
T ss_dssp HSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCT----------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCCCCC----------
Confidence 78999999996332 2345577899999999999999997542 446899999987765321
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
....|+.+|.+.+.+++.++.+ .|+++++++||.|.++..... ............ ..
T Consensus 173 ------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~---~~~~~~~~~~~~-----p~ 232 (270)
T 3ftp_A 173 ------------GQVNYAAAKAGVAGMTRALAREIGSRGITVNCVAPGFIDTDMTKGL---PQEQQTALKTQI-----PL 232 (270)
T ss_dssp ------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHHS---CHHHHHHHHTTC-----TT
T ss_pred ------------CchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCcchhhc---CHHHHHHHHhcC-----CC
Confidence 1245999999999999999887 489999999999988742211 111122222211 23
Q ss_pred ccceeHHHHHHHHHHhhcCCC--CCc-cEEEec
Q 023515 228 FGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~ 257 (281)
..+.+++|+|+++++++.... ..| .+++.|
T Consensus 233 ~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdG 265 (270)
T 3ftp_A 233 GRLGSPEDIAHAVAFLASPQAGYITGTTLHVNG 265 (270)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCCCCHHHHHHHHHHHhCCCcCCccCcEEEECC
Confidence 457899999999999997543 356 455544
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-29 Score=212.93 Aligned_cols=236 Identities=14% Similarity=0.136 Sum_probs=171.8
Q ss_pred hhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcC----------CCCcchhhhhhhccCCCCcEEEEEcCCCCcC
Q 023515 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRD----------PNDPKKTRHLLALDGASERLQLFKANLLEEG 73 (281)
Q Consensus 4 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~----------~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 73 (281)
|..+++|++|||||+|+||++++++|+++|++|++++|+ .+..+.+....... ..++.++++|++|.+
T Consensus 22 m~~l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~ 99 (322)
T 3qlj_A 22 MGVVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAA--GGEAVADGSNVADWD 99 (322)
T ss_dssp CCTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHT--TCEEEEECCCTTSHH
T ss_pred hcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhc--CCcEEEEECCCCCHH
Confidence 445678999999999999999999999999999999987 22222222222111 257899999999999
Q ss_pred cHHHHhc-------CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCCC---------ccEEEEecc
Q 023515 74 SFDSIVD-------GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFPS---------IKRVVLTSS 132 (281)
Q Consensus 74 ~~~~~~~-------~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~---------~~~~v~~SS 132 (281)
++.++++ ++|+||||||... ....+.|+..+++|+.++.++++++.+.+. ..+||++||
T Consensus 100 ~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS 179 (322)
T 3qlj_A 100 QAAGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSS 179 (322)
T ss_dssp HHHHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcC
Confidence 8888776 7899999999643 223455778999999999999999876521 158999999
Q ss_pred ceeeecCCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCcc
Q 023515 133 MAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTS 209 (281)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~ 209 (281)
..++.+.+ ....|+.||.+.+.+++.++.+ .|+++++|+|| +.++.........
T Consensus 180 ~~~~~~~~----------------------~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG-~~t~~~~~~~~~~ 236 (322)
T 3qlj_A 180 GAGLQGSV----------------------GQGNYSAAKAGIATLTLVGAAEMGRYGVTVNAIAPS-ARTRMTETVFAEM 236 (322)
T ss_dssp HHHHHCBT----------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-TTSCCSCCSCCC-
T ss_pred HHHccCCC----------------------CCccHHHHHHHHHHHHHHHHHHhcccCcEEEEecCC-CCCccchhhhhhh
Confidence 87765321 1245999999999999999887 58999999999 7776543222111
Q ss_pred HHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCCC--Cc-cEEEecC------------------CCCHHHHHHH
Q 023515 210 AAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPSA--NG-RYCLVER------------------VSHYSEIVNI 268 (281)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~~--~g-~~~~~~~------------------~~t~~e~~~~ 268 (281)
... ....+.+++++|+|+++++++..... .| .+++.|+ ..+..|+++.
T Consensus 237 ---~~~--------~~~~~~~~~pedva~~v~~L~s~~~~~itG~~i~vdGG~~~~~~~~~~~~~~~~~~~~~~~el~~~ 305 (322)
T 3qlj_A 237 ---MAT--------QDQDFDAMAPENVSPLVVWLGSAEARDVTGKVFEVEGGKIRVAEGWAHGPQIDKGARWDPAELGPV 305 (322)
T ss_dssp ------------------CCTTCGGGTHHHHHHHTSGGGGGCCSCEEEEETTEEEEEECCEEEEEEECSSCCCGGGHHHH
T ss_pred ---hhc--------cccccCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCccccCCCcccccccCccCCCCHHHHHHH
Confidence 000 11234567999999999999975432 45 4455432 2367999999
Q ss_pred HHHhCCC
Q 023515 269 IRELYPA 275 (281)
Q Consensus 269 i~~~~~~ 275 (281)
+.+.++.
T Consensus 306 ~~~~~~~ 312 (322)
T 3qlj_A 306 VADLLGK 312 (322)
T ss_dssp HHHHHHH
T ss_pred HHHHhhc
Confidence 9888763
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=203.74 Aligned_cols=225 Identities=14% Similarity=0.117 Sum_probs=160.4
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++|+++||||+|+||++++++|+++|++|++++|+.++...+...........++.++++|++|+++++++++
T Consensus 10 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 89 (267)
T 1iy8_A 10 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER 89 (267)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999865443332222111112468899999999998888776
Q ss_pred --CCcEeEEecccCCC------CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeee
Q 023515 81 --GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (281)
Q Consensus 81 --~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (281)
++|+||||||.... ...+.|+..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 90 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------- 160 (267)
T 1iy8_A 90 FGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGIG--------- 160 (267)
T ss_dssp HSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSBCS---------
T ss_pred cCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhccCCC---------
Confidence 68999999986432 2234577899999999998888876542 457999999987654211
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCC----CCccHH-HHHHHHhCCC
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPT----LNTSAA-AVLSLIKGAQ 221 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~----~~~~~~-~~~~~~~~~~ 221 (281)
....|+.+|.+.+.+++.++.+ .|+++++++||.++++..... ...... .........
T Consensus 161 -------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~- 226 (267)
T 1iy8_A 161 -------------NQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVN- 226 (267)
T ss_dssp -------------SBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred -------------CCccHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEeCCCcCcchhccccccChhhhhhHHHHHhccC-
Confidence 1245999999999999998876 489999999999998742110 001111 111122211
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCCC--CCcc-EEEec
Q 023515 222 TYPNVTFGWVNVKDVANAHIQAFEVPS--ANGR-YCLVE 257 (281)
Q Consensus 222 ~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~-~~~~~ 257 (281)
....+.+++|+|+++++++.... ..|. +.+.|
T Consensus 227 ----p~~r~~~~~dvA~~v~~l~s~~~~~~tG~~i~vdG 261 (267)
T 1iy8_A 227 ----PSKRYGEAPEIAAVVAFLLSDDASYVNATVVPIDG 261 (267)
T ss_dssp ----TTCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred ----CCCCCcCHHHHHHHHHHHcCccccCCCCCEEEECC
Confidence 12347899999999999997543 3564 44443
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=205.38 Aligned_cols=221 Identities=14% Similarity=0.126 Sum_probs=163.0
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCc-chhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP-KKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
.+++|++|||||+|+||++++++|+++|++|++++|+.... ..+..+... ...++.++++|++|+++++++++
T Consensus 44 ~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 121 (291)
T 3ijr_A 44 KLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEK--EGVKCVLLPGDLSDEQHCKDIVQETVR 121 (291)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHT--TTCCEEEEESCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHh--cCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999999986532 222222222 12578999999999998888776
Q ss_pred ---CCcEeEEecccCCC------CCCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 ---GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 ---~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|++|||||.... ...+.|+..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 122 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 191 (291)
T 3ijr_A 122 QLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAYEGNE---------- 191 (291)
T ss_dssp HHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHHHHCCT----------
T ss_pred HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHhcCCCC----------
Confidence 78999999986322 1345577899999999999999999874 345899999988775321
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
....|+.+|.+.+.+++.++.++ |+++++|+||.|++|...... .......... ....
T Consensus 192 ------------~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~--~~~~~~~~~~-----~~p~ 252 (291)
T 3ijr_A 192 ------------TLIDYSATKGAIVAFTRSLSQSLVQKGIRVNGVAPGPIWTPLIPSSF--DEKKVSQFGS-----NVPM 252 (291)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTHHHHHS--CHHHHHHTTT-----TSTT
T ss_pred ------------CChhHHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCCCcCCcccccC--CHHHHHHHHc-----cCCC
Confidence 12459999999999999998875 899999999999987521110 0111111111 1223
Q ss_pred ccceeHHHHHHHHHHhhcCCC--CCcc-EEEec
Q 023515 228 FGWVNVKDVANAHIQAFEVPS--ANGR-YCLVE 257 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~--~~g~-~~~~~ 257 (281)
..+.+++|+|+++++++.... ..|. +++.|
T Consensus 253 ~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdG 285 (291)
T 3ijr_A 253 QRPGQPYELAPAYVYLASSDSSYVTGQMIHVNG 285 (291)
T ss_dssp SSCBCGGGTHHHHHHHHSGGGTTCCSCEEEESS
T ss_pred CCCcCHHHHHHHHHHHhCCccCCCcCCEEEECC
Confidence 457899999999999997643 3564 44443
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=204.29 Aligned_cols=214 Identities=18% Similarity=0.121 Sum_probs=156.2
Q ss_pred hhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 4 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
|+.+++|++|||||+|+||++++++|+++|++|++++|+...... ...+++|++|.+++.++++
T Consensus 23 m~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~-------------~~~~~~Dv~~~~~~~~~~~~~~ 89 (266)
T 3uxy_A 23 MQGFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAA-------------DLHLPGDLREAAYADGLPGAVA 89 (266)
T ss_dssp ---CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSCC-------------SEECCCCTTSHHHHHHHHHHHH
T ss_pred hhCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHh-------------hhccCcCCCCHHHHHHHHHHHH
Confidence 555778999999999999999999999999999999997654322 2345799999888777664
Q ss_pred ----CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCee
Q 023515 81 ----GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVV 148 (281)
Q Consensus 81 ----~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (281)
++|+||||||... ....+.|+..+++|+.|+.++++++.+.+ +.++||++||..++.+.+
T Consensus 90 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~-------- 161 (266)
T 3uxy_A 90 AGLGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAGGGAIVNVASCWGLRPGP-------- 161 (266)
T ss_dssp HHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTBCCT--------
T ss_pred HhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCCCCC--------
Confidence 7899999999643 22345577889999999999999996532 457999999987765211
Q ss_pred eecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCC---CCcc-HHHHHHHHhCCC
Q 023515 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPT---LNTS-AAAVLSLIKGAQ 221 (281)
Q Consensus 149 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~---~~~~-~~~~~~~~~~~~ 221 (281)
....|+.||.+.+.+++.++.++ |+++++++||.+++|..... .... ...........
T Consensus 162 --------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~- 226 (266)
T 3uxy_A 162 --------------GHALYCLTKAALASLTQCMGMDHAPQGIRINAVCPNEVNTPMLRTGFAKRGFDPDRAVAELGRTV- 226 (266)
T ss_dssp --------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCHHHHHHHHHTTCCHHHHHHHHHTTS-
T ss_pred --------------CChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCCCcchHhhhhhhcccccchHHHHHHHhcC-
Confidence 12459999999999999998875 89999999999998742110 0001 11112222221
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCCCC--Ccc-EEEec
Q 023515 222 TYPNVTFGWVNVKDVANAHIQAFEVPSA--NGR-YCLVE 257 (281)
Q Consensus 222 ~~~~~~~~~i~~~D~a~~i~~~~~~~~~--~g~-~~~~~ 257 (281)
....+.+++|+|+++++++..... .|. +++.|
T Consensus 227 ----p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdG 261 (266)
T 3uxy_A 227 ----PLGRIAEPEDIADVVLFLASDAARYLCGSLVEVNG 261 (266)
T ss_dssp ----TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred ----CCCCCcCHHHHHHHHHHHhCchhcCCcCCEEEECc
Confidence 234578999999999999986533 464 45543
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-28 Score=198.15 Aligned_cols=227 Identities=18% Similarity=0.181 Sum_probs=168.0
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++|++|||||+++||+++++.|+++|.+|++++|+.++...++.+... ..++.++++|++|+++++++++
T Consensus 4 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~v~~~~~~ 80 (258)
T 4gkb_A 4 NLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAFLDALAQR---QPRATYLPVELQDDAQCRDAVAQTIAT 80 (258)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHHHHHHHH---CTTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHHHHHHhc---CCCEEEEEeecCCHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999988765444333222 2478899999999988877765
Q ss_pred --CCcEeEEecccCC----CCCCCccchhhhhHHHHHHHHHHHhhhCC--CccEEEEeccceeeecCCCCCCCCeeeecC
Q 023515 81 --GCDGVCHTASPFY----HDAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (281)
Q Consensus 81 --~~d~Vih~a~~~~----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~ 152 (281)
++|++|||||... +...+.|+..+++|+.+++.+.+++.+++ +..++|++||..+..+.+
T Consensus 81 ~G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~~~~------------ 148 (258)
T 4gkb_A 81 FGRLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSKTAVTGQG------------ 148 (258)
T ss_dssp HSCCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTHHHHCCS------------
T ss_pred hCCCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeehhhccCCC------------
Confidence 7899999999622 22345688999999999999999998864 236899999998875322
Q ss_pred CCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCc---cHHHHHHHHhCCCCCCCC
Q 023515 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNT---SAAAVLSLIKGAQTYPNV 226 (281)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 226 (281)
....|+.||.+.+.+.+.++.++ |+++++|.||.|.+|........ ......+.....| .
T Consensus 149 ----------~~~~Y~asKaav~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~p-l--- 214 (258)
T 4gkb_A 149 ----------NTSGYCASKGAQLALTREWAVALREHGVRVNAVIPAEVMTPLYRNWIATFEDPEAKLAEIAAKVP-L--- 214 (258)
T ss_dssp ----------SCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCSCC-----------CHHHHHHTTCT-T---
T ss_pred ----------CchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCChhHhhhhhcccChHHHHHHHHhcCC-C---
Confidence 12459999999999999999864 89999999999998864322111 1111222222211 1
Q ss_pred CccceeHHHHHHHHHHhhcCCCC--CccEEEecCCCC
Q 023515 227 TFGWVNVKDVANAHIQAFEVPSA--NGRYCLVERVSH 261 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~~--~g~~~~~~~~~t 261 (281)
.+.+..++|+|.++++++..... .|+.+..++.+|
T Consensus 215 g~R~g~peeiA~~v~fLaS~~a~~iTG~~i~VDGG~T 251 (258)
T 4gkb_A 215 GRRFTTPDEIADTAVFLLSPRASHTTGEWLFVDGGYT 251 (258)
T ss_dssp TTSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred CCCCcCHHHHHHHHHHHhCchhcCccCCeEEECCCcc
Confidence 13477999999999999976443 676655554443
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.9e-29 Score=205.03 Aligned_cols=223 Identities=16% Similarity=0.134 Sum_probs=157.2
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC-cchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
+++|+++||||+|+||++++++|+++|++|++++|+.++ .+.+....... ...++.++++|++|+++++++++
T Consensus 2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 80 (260)
T 1x1t_A 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQ-HGVKVLYDGADLSKGEAVRGLVDNAVRQ 80 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHH-HTSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhc-cCCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence 468999999999999999999999999999999998654 33322221111 01368899999999998888776
Q ss_pred --CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 --~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|+||||||.... ...+.|+..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 81 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 150 (260)
T 1x1t_A 81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVASA---------- 150 (260)
T ss_dssp HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECcHHhCcCCC----------
Confidence 68999999996332 2344567899999999999999997642 457999999987764211
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCcc--------HHHHHHH-Hh
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTS--------AAAVLSL-IK 218 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~--------~~~~~~~-~~ 218 (281)
....|+.+|.+.+.+++.++.++ |+++++++||.+.+|......... ....... ..
T Consensus 151 ------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (260)
T 1x1t_A 151 ------------NKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSE 218 (260)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC------------------------CHHH
T ss_pred ------------CCchHHHHHHHHHHHHHHHHHHhccCCEEEEEEeecCccCchHHHhhhhhccccCCchHHHHHHHhhc
Confidence 12459999999999999988764 899999999999998643211100 0001111 11
Q ss_pred CCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCc-cEEEec
Q 023515 219 GAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (281)
Q Consensus 219 ~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~ 257 (281)
.. ....+++++|+|+++++++.... ..| .+++.|
T Consensus 219 ~~-----p~~~~~~p~dva~~~~~l~s~~~~~~tG~~~~vdg 255 (260)
T 1x1t_A 219 KQ-----PSLQFVTPEQLGGTAVFLASDAAAQITGTTVSVDG 255 (260)
T ss_dssp HC-----TTCCCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred cC-----CCCCCcCHHHHHHHHHHHhChhhcCCCCCEEEECC
Confidence 11 12358899999999999997543 345 444444
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=202.98 Aligned_cols=223 Identities=14% Similarity=0.064 Sum_probs=160.0
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEc-CCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVR-DPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
.+++|+||||||+|+||++++++|+++|++|++++| +.++...+.+..... ..++.++++|++|.+++.++++
T Consensus 4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (261)
T 1gee_A 4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKV--GGEAIAVKGDVTVESDVINLVQSAIK 81 (261)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999 543333222221111 2468899999999988888776
Q ss_pred ---CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---C-ccEEEEeccceeeecCCCCCCCCee
Q 023515 81 ---GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---S-IKRVVLTSSMAAVLNTGKPRTPDVV 148 (281)
Q Consensus 81 ---~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~-~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (281)
++|+||||||.... ...+.++..+++|+.++.++++++.+.+ + .++||++||..++.+.+
T Consensus 82 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~~~-------- 153 (261)
T 1gee_A 82 EFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWP-------- 153 (261)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCCT--------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhcCCCC--------
Confidence 78999999996432 2234566889999999999999888642 2 57999999986653110
Q ss_pred eecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCC
Q 023515 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (281)
Q Consensus 149 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (281)
....|+.+|.+.+.+++.++.++ |++++++|||.++++...... .............
T Consensus 154 --------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~-~~~~~~~~~~~~~----- 213 (261)
T 1gee_A 154 --------------LFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKF-ADPEQRADVESMI----- 213 (261)
T ss_dssp --------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHH-HSHHHHHHHHTTC-----
T ss_pred --------------CccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCcCCchhhhcc-cChhHHHHHHhcC-----
Confidence 12459999999999999988764 899999999999997532100 0011122222211
Q ss_pred CCccceeHHHHHHHHHHhhcCCC--CCc-cEEEecC
Q 023515 226 VTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVER 258 (281)
Q Consensus 226 ~~~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~~ 258 (281)
....+++++|+|+++++++.... ..| .+++.++
T Consensus 214 ~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg 249 (261)
T 1gee_A 214 PMGYIGEPEEIAAVAAWLASSEASYVTGITLFADGG 249 (261)
T ss_dssp TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCCCcCHHHHHHHHHHHhCccccCCCCcEEEEcCC
Confidence 12357899999999999997532 245 4555543
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.4e-28 Score=198.88 Aligned_cols=216 Identities=14% Similarity=0.032 Sum_probs=147.8
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++|+++||||+|+||++++++|+++|++|++++|+.+... .++.++++|++|++++.++++
T Consensus 5 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~------------~~~~~~~~D~~d~~~~~~~~~~~~~~~ 72 (250)
T 2fwm_X 5 FSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQEQ------------YPFATEVMDVADAAQVAQVCQRLLAET 72 (250)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCSSC------------CSSEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhhhc------------CCceEEEcCCCCHHHHHHHHHHHHHHc
Confidence 56899999999999999999999999999999999865210 127888999999998888876
Q ss_pred -CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 -~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
++|+||||||.... ...+.|+..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 73 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~----------- 141 (250)
T 2fwm_X 73 ERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHTPRI----------- 141 (250)
T ss_dssp SCCCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCT-----------
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEEECchhhCCCCC-----------
Confidence 78999999996332 2234577899999999999999996532 457999999987654211
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHH-HHHhCCCCC--CC
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVL-SLIKGAQTY--PN 225 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~-~~~~~~~~~--~~ 225 (281)
....|+.+|.+.+.+++.++.++ |+++++++||.++++....... ...... ....-...+ ..
T Consensus 142 -----------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 209 (250)
T 2fwm_X 142 -----------GMSAYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDTDMQRTLWV-SDDAEEQRIRGFGEQFKLGI 209 (250)
T ss_dssp -----------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC-------------------------------
T ss_pred -----------CCchHHHHHHHHHHHHHHHHHHhCccCCEEEEEECCcccCcccccccc-ChhHHHHHHhhhhhcccccC
Confidence 12459999999999999998764 8999999999999986432110 000000 000000000 00
Q ss_pred CCccceeHHHHHHHHHHhhcCCC--CCccE-EEec
Q 023515 226 VTFGWVNVKDVANAHIQAFEVPS--ANGRY-CLVE 257 (281)
Q Consensus 226 ~~~~~i~~~D~a~~i~~~~~~~~--~~g~~-~~~~ 257 (281)
....+.+++|+|+++++++.... ..|.. .+.|
T Consensus 210 p~~~~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdG 244 (250)
T 2fwm_X 210 PLGKIARPQEIANTILFLASDLASHITLQDIVVDG 244 (250)
T ss_dssp ------CHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCCCCcCHHHHHHHHHHHhCccccCCCCCEEEECC
Confidence 12247899999999999998643 35644 4443
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=203.13 Aligned_cols=218 Identities=15% Similarity=0.093 Sum_probs=157.8
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++|++|||||+|+||++++++|+++|++|++++|+.++ ..+.... .. .++++|++|+++++++++
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~------~~-~~~~~D~~~~~~~~~~~~~~~~~ 74 (256)
T 2d1y_A 3 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEVAEAI------GG-AFFQVDLEDERERVRFVEEAAYA 74 (256)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-HHHHHHH------TC-EEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH-HHHHHHh------hC-CEEEeeCCCHHHHHHHHHHHHHH
Confidence 4668999999999999999999999999999999998765 3322211 13 788999999988887765
Q ss_pred --CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhC---CCccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 --~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|+||||||.... ...+.|+..+++|+.++.++++++.+. .+.++||++||..++.+.+
T Consensus 75 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~---------- 144 (256)
T 2d1y_A 75 LGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAEQ---------- 144 (256)
T ss_dssp HSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSBCT----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccccccCCCC----------
Confidence 68999999996332 123446789999999999999998764 2467999999987754211
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCC---CccHHHHHHHHhCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTL---NTSAAAVLSLIKGAQTYP 224 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~---~~~~~~~~~~~~~~~~~~ 224 (281)
....|+.||.+.+.+++.++.++ |+++++++||.+.++...... .............
T Consensus 145 ------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~----- 207 (256)
T 2d1y_A 145 ------------ENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIALSPDPERTRRDWEDL----- 207 (256)
T ss_dssp ------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHC--------CHHHHTT-----
T ss_pred ------------CChhHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCccCchhhhccccccCCHHHHHHHHhc-----
Confidence 12459999999999999998764 899999999999876411000 0000000111111
Q ss_pred CCCccceeHHHHHHHHHHhhcCCC--CCc-cEEEecC
Q 023515 225 NVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVER 258 (281)
Q Consensus 225 ~~~~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~~ 258 (281)
.....+++++|+|+++++++.... ..| .+++.++
T Consensus 208 ~~~~~~~~~~dvA~~~~~l~s~~~~~~~G~~~~v~gG 244 (256)
T 2d1y_A 208 HALRRLGKPEEVAEAVLFLASEKASFITGAILPVDGG 244 (256)
T ss_dssp STTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCCCCcCHHHHHHHHHHHhCchhcCCCCCEEEECCC
Confidence 123458999999999999997653 245 5666543
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.7e-29 Score=205.98 Aligned_cols=224 Identities=16% Similarity=0.093 Sum_probs=163.9
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++|+++||||+|+||++++++|+++|++|++++|+.++...+....... ..++.++++|++|.+++.++++
T Consensus 30 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 107 (275)
T 4imr_A 30 GLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIAS--GGTAQELAGDLSEAGAGTDLIERAEAI 107 (275)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHT--TCCEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc--CCeEEEEEecCCCHHHHHHHHHHHHHh
Confidence 467899999999999999999999999999999999887766554433222 2578999999999998888776
Q ss_pred -CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 -GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 -~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
++|++|||||... ....+.|+..+++|+.|+.++++++.+.+ +.++||++||..++.+..
T Consensus 108 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~~----------- 176 (275)
T 4imr_A 108 APVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKWGRVVSIGSINQLRPKS----------- 176 (275)
T ss_dssp SCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT-----------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCCCCC-----------
Confidence 7899999999622 22345577899999999999999997642 457999999987654110
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCc
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (281)
....|+.||.+.+.+++.++.++ |+++++++||.+.++...................... ..
T Consensus 177 -----------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~p----~~ 241 (275)
T 4imr_A 177 -----------VVTAYAATKAAQHNLIQSQARDFAGDNVLLNTLAPGLVDTDRNADRRAQDPEGWDEYVRTLNW----MG 241 (275)
T ss_dssp -----------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHHHHHHHHHCHHHHHHHHHHHST----TC
T ss_pred -----------CchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEEeccccCcccccccccChHHHHHHHhhcCc----cC
Confidence 12349999999999999998875 8999999999998864211000011112222211111 22
Q ss_pred cceeHHHHHHHHHHhhcCCC--CCccE-EEec
Q 023515 229 GWVNVKDVANAHIQAFEVPS--ANGRY-CLVE 257 (281)
Q Consensus 229 ~~i~~~D~a~~i~~~~~~~~--~~g~~-~~~~ 257 (281)
.+..++|+|+++++++.... ..|.. ++.|
T Consensus 242 r~~~pedvA~~v~fL~s~~a~~itG~~i~vdG 273 (275)
T 4imr_A 242 RAGRPEEMVGAALFLASEACSFMTGETIFLTG 273 (275)
T ss_dssp SCBCGGGGHHHHHHHHSGGGTTCCSCEEEESS
T ss_pred CCcCHHHHHHHHHHHcCcccCCCCCCEEEeCC
Confidence 36789999999999998643 25644 4433
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=9.5e-29 Score=205.59 Aligned_cols=232 Identities=17% Similarity=0.178 Sum_probs=162.4
Q ss_pred CcchhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc
Q 023515 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (281)
Q Consensus 1 ~~~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 80 (281)
|+++..+++|+++||||+|+||++++++|+++|++|++++|++++...+.... .++.++++|++|+++++++++
T Consensus 1 M~~~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~------~~~~~~~~Dv~d~~~v~~~~~ 74 (270)
T 1yde_A 1 MATGTRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL------PGAVFILCDVTQEDDVKTLVS 74 (270)
T ss_dssp ---CCTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC------TTEEEEECCTTSHHHHHHHHH
T ss_pred CCCCCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh------cCCeEEEcCCCCHHHHHHHHH
Confidence 55555677899999999999999999999999999999999765433322211 247899999999998888776
Q ss_pred -------CCcEeEEecccCCC------CCCCccchhhhhHHHHHHHHHHHhhhCC--CccEEEEeccceeeecCCCCCCC
Q 023515 81 -------GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTP 145 (281)
Q Consensus 81 -------~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~ 145 (281)
++|+||||||.... ...+.|+..+++|+.++.++++++.+.+ +.++||++||..+..+.+
T Consensus 75 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~----- 149 (270)
T 1yde_A 75 ETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAIGQA----- 149 (270)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHHCCT-----
T ss_pred HHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcCccccCCCC-----
Confidence 78999999986431 1234467899999999999999998642 247999999987665221
Q ss_pred CeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCC---CCCccHHHHHHHHhC
Q 023515 146 DVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQP---TLNTSAAAVLSLIKG 219 (281)
Q Consensus 146 ~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~---~~~~~~~~~~~~~~~ 219 (281)
....|+.+|.+.+.+++.++.+ +|+++++++||.+++|.... ........+......
T Consensus 150 -----------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~ 212 (270)
T 1yde_A 150 -----------------QAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLA 212 (270)
T ss_dssp -----------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHHT
T ss_pred -----------------CCcccHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCccccchhhhhhhcccchHHHHHHHhhc
Confidence 1245999999999999999876 58999999999999874211 001111111111111
Q ss_pred CCCCCCCCccceeHHHHHHHHHHhhcCC-CCCc-cEEEec-CCCCHHHH
Q 023515 220 AQTYPNVTFGWVNVKDVANAHIQAFEVP-SANG-RYCLVE-RVSHYSEI 265 (281)
Q Consensus 220 ~~~~~~~~~~~i~~~D~a~~i~~~~~~~-~~~g-~~~~~~-~~~t~~e~ 265 (281)
.| ...+.+++|+|+++++++... ...| .+.+.| ..+.+...
T Consensus 213 ~p-----~~r~~~p~dva~~v~~L~s~~~~itG~~i~vdGG~~~~~~~~ 256 (270)
T 1yde_A 213 QP-----LGRMGQPAEVGAAAVFLASEANFCTGIELLVTGGAELGYGCK 256 (270)
T ss_dssp ST-----TSSCBCHHHHHHHHHHHHHHCTTCCSCEEEESTTTTSCC---
T ss_pred CC-----CCCCcCHHHHHHHHHHHcccCCCcCCCEEEECCCeecccCcC
Confidence 11 223679999999999998752 2346 455544 34444433
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.3e-29 Score=204.91 Aligned_cols=224 Identities=12% Similarity=0.047 Sum_probs=158.9
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++|+++||||+|+||++++++|+++|++|++++|+.++...+.+.........++.++++|++|+++++++++
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 84 (260)
T 2z1n_A 5 IQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDLG 84 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 56899999999999999999999999999999999865443332222111001268899999999999888876
Q ss_pred CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeecC
Q 023515 81 GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (281)
Q Consensus 81 ~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~ 152 (281)
++|+||||||... ....+.|+..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 85 gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------ 152 (260)
T 2z1n_A 85 GADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGWGRMVYIGSVTLLRPWQ------------ 152 (260)
T ss_dssp CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT------------
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhcCCCC------------
Confidence 5999999999632 22344577899999999999888887542 457999999987764211
Q ss_pred CCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCC------ccH-HH-HHHHHhCCC
Q 023515 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLN------TSA-AA-VLSLIKGAQ 221 (281)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~------~~~-~~-~~~~~~~~~ 221 (281)
....|+.+|.+.+.+++.++.++ |+++++++||.+++|....... ... .. .......
T Consensus 153 ----------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 220 (260)
T 2z1n_A 153 ----------DLALSNIMRLPVIGVVRTLALELAPHGVTVNAVLPSLILTDRVRSLAEERARRSGITVEEALKSMASR-- 220 (260)
T ss_dssp ----------TBHHHHHHTHHHHHHHHHHHHHHGGGTEEEEEEEECHHHHCCCC-----------------------C--
T ss_pred ----------CCchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEEECCcccchhhhhhhhhhcccCCcHHHHHHHHHhc--
Confidence 12459999999999999998765 8999999999999986431100 000 00 0111111
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCCC--CCccE-EEec
Q 023515 222 TYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRY-CLVE 257 (281)
Q Consensus 222 ~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~-~~~~ 257 (281)
.....+.+++|+|+++++++.... ..|.. ++.|
T Consensus 221 ---~p~~r~~~~~dva~~v~~l~s~~~~~~tG~~i~vdG 256 (260)
T 2z1n_A 221 ---IPMGRVGKPEELASVVAFLASEKASFITGAVIPVDG 256 (260)
T ss_dssp ---CTTSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred ---CCCCCccCHHHHHHHHHHHhCccccCCCCCEEEeCC
Confidence 112347899999999999997643 34644 4443
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-28 Score=199.95 Aligned_cols=212 Identities=18% Similarity=0.187 Sum_probs=154.6
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
++|+|+||||+|+||++++++|+++| ++|++++|+..+.+.+..+ ...++.++++|++|.++++++++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~l~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (250)
T 1yo6_A 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSI-----KDSRVHVLPLTVTCDKSLDTFVSKVGEI 76 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTC-----CCTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHHHHHhc-----cCCceEEEEeecCCHHHHHHHHHHHHHh
Confidence 47899999999999999999999999 9999999987655443322 13578999999999988888876
Q ss_pred ----CCcEeEEecccCC-C-----CCCCccchhhhhHHHHHHHHHHHhhhCC---------C-----ccEEEEeccceee
Q 023515 81 ----GCDGVCHTASPFY-H-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---------S-----IKRVVLTSSMAAV 136 (281)
Q Consensus 81 ----~~d~Vih~a~~~~-~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---------~-----~~~~v~~SS~~~~ 136 (281)
++|+||||||... . ...+.++..+++|+.++.++++++.+.+ + .++||++||..++
T Consensus 77 ~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~ 156 (250)
T 1yo6_A 77 VGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGS 156 (250)
T ss_dssp HGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGC
T ss_pred cCCCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEeccCccc
Confidence 7999999998644 1 1233466889999999999999988752 2 5789999998776
Q ss_pred ecCCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHH
Q 023515 137 LNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAV 213 (281)
Q Consensus 137 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~ 213 (281)
.+... +..+. .....|+.+|++.+.+++.++.++ |+++++++||.+.++....
T Consensus 157 ~~~~~---------~~~~~------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~--------- 212 (250)
T 1yo6_A 157 ITDNT---------SGSAQ------FPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGK--------- 212 (250)
T ss_dssp STTCC---------STTSS------SCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC----------------
T ss_pred cCCcc---------ccccc------CCccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEcCCceecCCCCC---------
Confidence 53210 01110 123459999999999999998876 8999999999998865221
Q ss_pred HHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCccEEEe-cCCCCH
Q 023515 214 LSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLV-ERVSHY 262 (281)
Q Consensus 214 ~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~-~~~~t~ 262 (281)
..+++++|+|+.+++++.... ..|.|+.. ++.++|
T Consensus 213 --------------~~~~~~~~~a~~~~~~~~~~~~~~~G~~~~~~g~~~~~ 250 (250)
T 1yo6_A 213 --------------NAALTVEQSTAELISSFNKLDNSHNGRFFMRNLKPYEF 250 (250)
T ss_dssp --------------------HHHHHHHHHHHTTCCGGGTTCEEETTEEECCC
T ss_pred --------------CCCCCHHHHHHHHHHHHhcccccCCCeEEEECCcCCCC
Confidence 136799999999999998765 35766654 444443
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-28 Score=205.21 Aligned_cols=223 Identities=15% Similarity=0.117 Sum_probs=164.5
Q ss_pred hccCCCeEEEeCCchHHHHHHHHHHHHCCC---EEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-
Q 023515 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGY---TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD- 80 (281)
Q Consensus 5 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~- 80 (281)
..+++|++|||||+|+||++++++|+++|+ +|++++|+.++.+.+...........++.++++|++|.++++++++
T Consensus 29 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 108 (287)
T 3rku_A 29 ERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIEN 108 (287)
T ss_dssp HHHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHT
T ss_pred hhcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 346789999999999999999999999987 9999999876655544433222223578999999999999998876
Q ss_pred ------CCcEeEEecccCC------CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCC
Q 023515 81 ------GCDGVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTP 145 (281)
Q Consensus 81 ------~~d~Vih~a~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~ 145 (281)
++|+||||||... ....+.|+..+++|+.|+.++++++.+.+ +.++||++||..++.+.+
T Consensus 109 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~~----- 183 (287)
T 3rku_A 109 LPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGRDAYP----- 183 (287)
T ss_dssp SCGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCT-----
T ss_pred HHHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECChhhcCCCC-----
Confidence 6899999999633 12344577899999999999999996532 457999999987765221
Q ss_pred CeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCC
Q 023515 146 DVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT 222 (281)
Q Consensus 146 ~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~ 222 (281)
....|+.+|.+.+.+++.++.+ .|+++++|+||.|.++...................
T Consensus 184 -----------------~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~--- 243 (287)
T 3rku_A 184 -----------------TGSIYCASKFAVGAFTDSLRKELINTKIRVILIAPGLVETEFSLVRYRGNEEQAKNVYKD--- 243 (287)
T ss_dssp -----------------TCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEESCEESSHHHHHTTTCHHHHHHHHTT---
T ss_pred -----------------CCchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEeCCcCcCccccccccCcHHHHHHhhcc---
Confidence 1245999999999999999987 48999999999999874210001111112222221
Q ss_pred CCCCCccceeHHHHHHHHHHhhcCCCC--Cc-cEEEec
Q 023515 223 YPNVTFGWVNVKDVANAHIQAFEVPSA--NG-RYCLVE 257 (281)
Q Consensus 223 ~~~~~~~~i~~~D~a~~i~~~~~~~~~--~g-~~~~~~ 257 (281)
..++.++|+|+++++++..+.. .| .+++.+
T Consensus 244 -----~~p~~pedvA~~v~~l~s~~~~~i~g~~i~v~~ 276 (287)
T 3rku_A 244 -----TTPLMADDVADLIVYATSRKQNTVIADTLIFPT 276 (287)
T ss_dssp -----SCCEEHHHHHHHHHHHHTSCTTEEEEEEEEEET
T ss_pred -----cCCCCHHHHHHHHHHHhCCCCCeEecceEEeeC
Confidence 1245999999999999987654 23 455543
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=203.91 Aligned_cols=227 Identities=15% Similarity=0.041 Sum_probs=162.4
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++|++|||||+|+||++++++|+++|++|++++|+.++.+.+...........++.++++|++|.+++.++++
T Consensus 5 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (265)
T 3lf2_A 5 DLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERT 84 (265)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999876544443332221112358999999999988887765
Q ss_pred --CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 --GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 --~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|++|||||... ....+.|+..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 85 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 154 (265)
T 3lf2_A 85 LGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQPEP---------- 154 (265)
T ss_dssp HCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEGGGTSCCT----------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECCcccCCCCC----------
Confidence 6899999999632 22345577899999999999999997642 356899999987764221
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCC------CccHHHHHHHHhCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTL------NTSAAAVLSLIKGAQ 221 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~------~~~~~~~~~~~~~~~ 221 (281)
....|+.+|.+.+.+++.++.++ |+++++|+||.+.+|...... ......+........
T Consensus 155 ------------~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (265)
T 3lf2_A 155 ------------HMVATSAARAGVKNLVRSMAFEFAPKGVRVNGILIGLVESGQWRRRFEAREERELDWAQWTAQLARNK 222 (265)
T ss_dssp ------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHTC------CHHHHHHHHHHHT
T ss_pred ------------CchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCcCchhhhhhhhhhhhccCHHHHHHHHhhcc
Confidence 12459999999999999998875 899999999999886421100 001111121111100
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCCC--CCccEEEe
Q 023515 222 TYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLV 256 (281)
Q Consensus 222 ~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~ 256 (281)
. .....+..++|+|+++++++.... ..|..+..
T Consensus 223 ~--~p~~r~~~pedvA~~v~fL~s~~~~~itG~~i~v 257 (265)
T 3lf2_A 223 Q--IPLGRLGKPIEAARAILFLASPLSAYTTGSHIDV 257 (265)
T ss_dssp T--CTTCSCBCHHHHHHHHHHHHSGGGTTCCSEEEEE
T ss_pred C--CCcCCCcCHHHHHHHHHHHhCchhcCcCCCEEEE
Confidence 0 112347799999999999998543 35644433
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=202.86 Aligned_cols=218 Identities=18% Similarity=0.153 Sum_probs=141.9
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++|++|||||+|+||++++++|+++|++|++++|+.++...+.+..... ..++.++++|++|+++++++++
T Consensus 6 ~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T 3qiv_A 6 RFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVAD--GGTAISVAVDVSDPESAKAMADRTLAE 83 (253)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999876554443332222 2578999999999998888876
Q ss_pred --CCcEeEEecccCC--------CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCe
Q 023515 81 --GCDGVCHTASPFY--------HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDV 147 (281)
Q Consensus 81 --~~d~Vih~a~~~~--------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (281)
++|+||||||... ....+.++..+++|+.++.++++++.+.+ +.++||++||..++.
T Consensus 84 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------- 153 (253)
T 3qiv_A 84 FGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRGGGAIVNQSSTAAWL---------- 153 (253)
T ss_dssp HSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC---------------
T ss_pred cCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEECCccccC----------
Confidence 7899999998621 22334567899999999888888876642 457899999987652
Q ss_pred eeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCC
Q 023515 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP 224 (281)
Q Consensus 148 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (281)
....|+.||++.+.+++.++.++ |+++++++||.+++|....... .........+.
T Consensus 154 ---------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~--~~~~~~~~~~~---- 212 (253)
T 3qiv_A 154 ---------------YSNYYGLAKVGINGLTQQLSRELGGRNIRINAIAPGPIDTEANRTTTP--KEMVDDIVKGL---- 212 (253)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTTTTTEEEEEEEC------------------------------
T ss_pred ---------------CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecCCcccchhhcCc--HHHHHHHhccC----
Confidence 11349999999999999999886 7999999999999986432110 11111111211
Q ss_pred CCCccceeHHHHHHHHHHhhcCCCC--Cc-cEEEec
Q 023515 225 NVTFGWVNVKDVANAHIQAFEVPSA--NG-RYCLVE 257 (281)
Q Consensus 225 ~~~~~~i~~~D~a~~i~~~~~~~~~--~g-~~~~~~ 257 (281)
....+.+++|+|+++++++..... .| .|++.+
T Consensus 213 -~~~~~~~~~dva~~~~~l~s~~~~~~tG~~~~vdg 247 (253)
T 3qiv_A 213 -PLSRMGTPDDLVGMCLFLLSDEASWITGQIFNVDG 247 (253)
T ss_dssp --------CCHHHHHHHHHHSGGGTTCCSCEEEC--
T ss_pred -CCCCCCCHHHHHHHHHHHcCccccCCCCCEEEECC
Confidence 223467899999999999975433 45 566554
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.6e-28 Score=201.86 Aligned_cols=227 Identities=18% Similarity=0.172 Sum_probs=162.7
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC-------------cchhhhhhh-ccCCCCcEEEEEcCCCC
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-------------PKKTRHLLA-LDGASERLQLFKANLLE 71 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-------------~~~~~~~~~-~~~~~~~~~~~~~D~~~ 71 (281)
.+++|+++||||+|+||++++++|+++|++|++++|+... .+.+..... ......++.++++|++|
T Consensus 8 ~l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~ 87 (286)
T 3uve_A 8 RVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRD 87 (286)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTC
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCC
Confidence 4678999999999999999999999999999999997422 222222111 11123578999999999
Q ss_pred cCcHHHHhc-------CCcEeEEecccCCC------CCCCccchhhhhHHHHHHHHHHHhhhCC----CccEEEEeccce
Q 023515 72 EGSFDSIVD-------GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFP----SIKRVVLTSSMA 134 (281)
Q Consensus 72 ~~~~~~~~~-------~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~~~v~~SS~~ 134 (281)
+++++++++ ++|++|||||.... ...+.|+..+++|+.++.++++++.+.+ ..++||++||..
T Consensus 88 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~ 167 (286)
T 3uve_A 88 YDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSVG 167 (286)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGG
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECchh
Confidence 998888776 78999999996332 2345577899999999999999998753 246899999987
Q ss_pred eeecCCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCC-----
Q 023515 135 AVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTL----- 206 (281)
Q Consensus 135 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~----- 206 (281)
++.+.+ ....|+.||.+.+.+++.++.+ .|+++++|+||.|.+|......
T Consensus 168 ~~~~~~----------------------~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~ 225 (286)
T 3uve_A 168 GLKAYP----------------------HTGHYVAAKHGVVGLMRAFGVELGQHMIRVNSVHPTHVKTPMLHNEGTFKMF 225 (286)
T ss_dssp GTSCCT----------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSTTTSSHHHHHHH
T ss_pred hccCCC----------------------CccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCCcccccchhhhc
Confidence 765221 1245999999999999999887 4899999999999998643210
Q ss_pred -----CccHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCcc-EEEec
Q 023515 207 -----NTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGR-YCLVE 257 (281)
Q Consensus 207 -----~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~-~~~~~ 257 (281)
.............. ......+.+++|+|+++++++.... ..|+ +++.|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~---~~~p~r~~~p~dvA~~v~fL~s~~a~~itG~~i~vdG 281 (286)
T 3uve_A 226 RPDLENPGPDDMAPICQMF---HTLPIPWVEPIDISNAVLFFASDEARYITGVTLPIDA 281 (286)
T ss_dssp CTTSSSCCHHHHHHHHHTT---CSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred cccccccchhhHHHHHHhh---hccCCCcCCHHHHHHHHHHHcCccccCCcCCEEeECC
Confidence 00011111111111 1112568899999999999997543 3564 44443
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=8e-29 Score=205.81 Aligned_cols=228 Identities=16% Similarity=0.129 Sum_probs=159.1
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++|+++||||+|+||++++++|+++|++|++++|+.++...+...........++.++++|++|++++.++++
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 84 (267)
T 2gdz_A 5 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF 84 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence 56889999999999999999999999999999999865433322221111112468899999999988888776
Q ss_pred -CCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCC---C---ccEEEEeccceeeecCCCCCCCCeeeecCC
Q 023515 81 -GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFP---S---IKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (281)
Q Consensus 81 -~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~---~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~ 153 (281)
++|+||||||... .+.|+..+++|+.++.++.+.+.+.+ + .++||++||..++.+.+
T Consensus 85 g~id~lv~~Ag~~~---~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------- 148 (267)
T 2gdz_A 85 GRLDILVNNAGVNN---EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVA------------- 148 (267)
T ss_dssp SCCCEEEECCCCCC---SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCT-------------
T ss_pred CCCCEEEECCCCCC---hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccCCCC-------------
Confidence 5799999999753 35677999999998888777766532 1 47899999987754211
Q ss_pred CCChhhhccCCchhhhhHHHHHHHHHHHH--H---hcCCcEEEEcCCcccCCCCCCCCCcc-H----HHHHHHHhCCCCC
Q 023515 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFA--K---EKSIDLVTINPAMVIGPLLQPTLNTS-A----AAVLSLIKGAQTY 223 (281)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~--~---~~g~~~~~irp~~v~g~~~~~~~~~~-~----~~~~~~~~~~~~~ 223 (281)
....|+.+|.+.+.+++.++ . ..|+++++++||.+.++......... . .........
T Consensus 149 ---------~~~~Y~~sK~a~~~~~~~~ala~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~---- 215 (267)
T 2gdz_A 149 ---------QQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDM---- 215 (267)
T ss_dssp ---------TCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGCHHHHGGGGGGHHHHHHH----
T ss_pred ---------CCchHHHHHHHHHHHHHHHHHHHHhccCCcEEEEEecCcCcchhhhccccccccchhhhHHHHHHHH----
Confidence 12359999999999998752 2 35899999999999887421100000 0 000000000
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCCCCc-cEEEec-CCCCHHH
Q 023515 224 PNVTFGWVNVKDVANAHIQAFEVPSANG-RYCLVE-RVSHYSE 264 (281)
Q Consensus 224 ~~~~~~~i~~~D~a~~i~~~~~~~~~~g-~~~~~~-~~~t~~e 264 (281)
.....+++++|+|+++++++......| ++++.+ ...++.|
T Consensus 216 -~~~~~~~~~~dvA~~v~~l~s~~~~~G~~~~v~gg~~~~~~~ 257 (267)
T 2gdz_A 216 -IKYYGILDPPLIANGLITLIEDDALNGAIMKITTSKGIHFQD 257 (267)
T ss_dssp -HHHHCCBCHHHHHHHHHHHHHCTTCSSCEEEEETTTEEEECC
T ss_pred -hccccCCCHHHHHHHHHHHhcCcCCCCcEEEecCCCcccccC
Confidence 012347899999999999998765556 666664 4455543
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.8e-29 Score=204.84 Aligned_cols=222 Identities=19% Similarity=0.137 Sum_probs=158.0
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccC-----CCCcEEEEEcCCCCcCcHHHHhcC
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDG-----ASERLQLFKANLLEEGSFDSIVDG 81 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~ 81 (281)
+++|+|+||||+|+||++++++|+++|++|++++|+.++.+.+........ ...++.++++|++|.+++.++++.
T Consensus 5 ~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 84 (264)
T 2pd6_A 5 LRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLEQ 84 (264)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHHH
Confidence 568899999999999999999999999999999998654433222211100 013688999999999888887763
Q ss_pred -------C-cEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---C-ccEEEEeccceeeecCCCCCC
Q 023515 82 -------C-DGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---S-IKRVVLTSSMAAVLNTGKPRT 144 (281)
Q Consensus 82 -------~-d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~-~~~~v~~SS~~~~~~~~~~~~ 144 (281)
+ |+||||||.... ...+.++..+++|+.++.++++++.+.+ + .++||++||..++.+.+
T Consensus 85 ~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---- 160 (264)
T 2pd6_A 85 VQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGNV---- 160 (264)
T ss_dssp HHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHCCT----
T ss_pred HHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhhccCCC----
Confidence 4 999999996432 2334567889999999999999998752 2 46899999987665221
Q ss_pred CCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCC
Q 023515 145 PDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ 221 (281)
Q Consensus 145 ~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~ 221 (281)
....|+.+|.+.+.+++.++.+ .|++++++|||.++|+...... .........+.
T Consensus 161 ------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~---~~~~~~~~~~~- 218 (264)
T 2pd6_A 161 ------------------GQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQKVP---QKVVDKITEMI- 218 (264)
T ss_dssp ------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSCC-------------CTGGGC-
T ss_pred ------------------CChhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeecccccchhhcC---HHHHHHHHHhC-
Confidence 1245999999999999999877 6899999999999998643210 01111111111
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCCC--CCc-cEEEecC
Q 023515 222 TYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVER 258 (281)
Q Consensus 222 ~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~~ 258 (281)
....+++++|+|+++++++.... ..| .+++.|+
T Consensus 219 ----~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg 254 (264)
T 2pd6_A 219 ----PMGHLGDPEDVADVVAFLASEDSGYITGTSVEVTGG 254 (264)
T ss_dssp ----TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ----CCCCCCCHHHHHHHHHHHcCCcccCCCCCEEEECCC
Confidence 12347899999999999997543 345 4555543
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-28 Score=201.54 Aligned_cols=210 Identities=14% Similarity=0.079 Sum_probs=150.4
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++|+++||||+|+||++++++|+++|++|++++|+.++.+.+....... ..++.++++|++|.++++++++
T Consensus 5 ~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~g 82 (252)
T 3h7a_A 5 PRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAA--GGRIVARSLDARNEDEVTAFLNAADAHA 82 (252)
T ss_dssp CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEECcCCCHHHHHHHHHHHHhhC
Confidence 56899999999999999999999999999999999877665544433222 2578999999999999888876
Q ss_pred CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeecC
Q 023515 81 GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (281)
Q Consensus 81 ~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~ 152 (281)
++|++|||||... ....+.|+..+++|+.|+.++++++.+.+ +.++||++||..++.+.+
T Consensus 83 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------ 150 (252)
T 3h7a_A 83 PLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQGKIFFTGATASLRGGS------------ 150 (252)
T ss_dssp CEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTCCCT------------
T ss_pred CceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHHcCCCC------------
Confidence 6799999999633 23345577899999999999999987642 346899999987765221
Q ss_pred CCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcE-EEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCc
Q 023515 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDL-VTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (281)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~-~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (281)
....|+.||.+.+.+++.++.++ |+++ +++.||.+.++....... ........ ....
T Consensus 151 ----------~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~n~v~PG~v~T~~~~~~~~---~~~~~~~~------~~~~ 211 (252)
T 3h7a_A 151 ----------GFAAFASAKFGLRAVAQSMARELMPKNIHVAHLIIDSGVDTAWVRERRE---QMFGKDAL------ANPD 211 (252)
T ss_dssp ----------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC----------------------------------
T ss_pred ----------CCccHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCCccCChhhhccch---hhhhhhhh------cCCc
Confidence 12459999999999999998864 8999 899999998876432111 11111111 1112
Q ss_pred cceeHHHHHHHHHHhhcCCCC
Q 023515 229 GWVNVKDVANAHIQAFEVPSA 249 (281)
Q Consensus 229 ~~i~~~D~a~~i~~~~~~~~~ 249 (281)
.+++++|+|+++++++..+..
T Consensus 212 ~~~~pedvA~~~~~l~s~~~~ 232 (252)
T 3h7a_A 212 LLMPPAAVAGAYWQLYQQPKS 232 (252)
T ss_dssp --CCHHHHHHHHHHHHHCCGG
T ss_pred cCCCHHHHHHHHHHHHhCchh
Confidence 288999999999999987654
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-28 Score=203.37 Aligned_cols=221 Identities=14% Similarity=0.103 Sum_probs=161.7
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++|++|||||+|+||++++++|+++|++|++++|+.+....+.... ..++.++++|++|.++++++++
T Consensus 24 ~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 98 (277)
T 4dqx_A 24 DLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEI-----GSKAFGVRVDVSSAKDAESMVEKTTAK 98 (277)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-----CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999999865443332221 2468899999999998888776
Q ss_pred --CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 --GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 --~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|+||||||... ....+.|+..+++|+.|+.++++++.+.+ +.++||++||..++.+.+
T Consensus 99 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 168 (277)
T 4dqx_A 99 WGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTATSAIA---------- 168 (277)
T ss_dssp HSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECCGGGTSCCT----------
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECchhhCcCCC----------
Confidence 7899999999632 22345577889999999999999997642 346999999987764211
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCC---CCccHHHHHHHHhCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPT---LNTSAAAVLSLIKGAQTYP 224 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~---~~~~~~~~~~~~~~~~~~~ 224 (281)
....|+.||++.+.+++.++.++ |+++++++||.+.++..... ..............
T Consensus 169 ------------~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~----- 231 (277)
T 4dqx_A 169 ------------DRTAYVASKGAISSLTRAMAMDHAKEGIRVNAVAPGTIDSPYFTKIFAEAKDPAKLRSDFNAR----- 231 (277)
T ss_dssp ------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHHTCSCHHHHHHHHHTT-----
T ss_pred ------------CChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCchhhhhcccccchhHHHHHHHhc-----
Confidence 12459999999999999998875 89999999999988641100 00111111112221
Q ss_pred CCCccceeHHHHHHHHHHhhcCCC--CCc-cEEEecC
Q 023515 225 NVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVER 258 (281)
Q Consensus 225 ~~~~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~~ 258 (281)
.....+.+++|+|+++++++.... ..| .+++.|+
T Consensus 232 ~~~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG 268 (277)
T 4dqx_A 232 AVMDRMGTAEEIAEAMLFLASDRSRFATGSILTVDGG 268 (277)
T ss_dssp STTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred CcccCCcCHHHHHHHHHHHhCCccCCCcCCEEEECCc
Confidence 123447899999999999997654 246 4555443
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-28 Score=199.86 Aligned_cols=218 Identities=17% Similarity=0.134 Sum_probs=157.4
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---CC
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---GC 82 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---~~ 82 (281)
..++|+||||||+|+||++++++|+++|++|++++|+.++...+.... ..++.++.+|+++.+++.++++ ++
T Consensus 11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~i 85 (249)
T 3f9i_A 11 DLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNAL-----KDNYTIEVCNLANKEECSNLISKTSNL 85 (249)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CSSEEEEECCTTSHHHHHHHHHTCSCC
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh-----ccCccEEEcCCCCHHHHHHHHHhcCCC
Confidence 356899999999999999999999999999999999765444333221 1368899999999999988887 68
Q ss_pred cEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeecCCC
Q 023515 83 DGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWF 154 (281)
Q Consensus 83 d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~ 154 (281)
|+||||||... ....+.++..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 86 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------------- 151 (249)
T 3f9i_A 86 DILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIAGNP-------------- 151 (249)
T ss_dssp SEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCC--CCS--------------
T ss_pred CEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEccHHhccCCC--------------
Confidence 99999999633 23446678999999999999999987642 456899999987765221
Q ss_pred CChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccce
Q 023515 155 SDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWV 231 (281)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 231 (281)
....|+.||++.+.+++.++.+ .|+++++++||.+.++..... ..........+. ....+.
T Consensus 152 --------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~---~~~~~~~~~~~~-----~~~~~~ 215 (249)
T 3f9i_A 152 --------GQANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTDKL---NEKQREAIVQKI-----PLGTYG 215 (249)
T ss_dssp --------CSHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBC------C---CHHHHHHHHHHC-----TTCSCB
T ss_pred --------CCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCccccCccccc---CHHHHHHHHhcC-----CCCCCc
Confidence 1245999999999999998876 489999999999998864332 122222222222 234588
Q ss_pred eHHHHHHHHHHhhcCCCC--Cc-cEEEecC
Q 023515 232 NVKDVANAHIQAFEVPSA--NG-RYCLVER 258 (281)
Q Consensus 232 ~~~D~a~~i~~~~~~~~~--~g-~~~~~~~ 258 (281)
+++|+|+++++++..... .| .+++.|+
T Consensus 216 ~~~dva~~~~~l~s~~~~~~tG~~~~vdgG 245 (249)
T 3f9i_A 216 IPEDVAYAVAFLASNNASYITGQTLHVNGG 245 (249)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CHHHHHHHHHHHcCCccCCccCcEEEECCC
Confidence 999999999999986543 45 5555543
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=202.18 Aligned_cols=218 Identities=18% Similarity=0.165 Sum_probs=161.6
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++|+++||||+|+||++++++|+++|++|++++|+.++...+.... ..++.++++|++|+++++++++
T Consensus 3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 77 (247)
T 3rwb_A 3 RLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI-----GKKARAIAADISDPGSVKALFAEIQAL 77 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH-----CTTEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999999865443332221 2468999999999998888876
Q ss_pred --CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---C-ccEEEEeccceeeecCCCCCCCCeee
Q 023515 81 --GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---S-IKRVVLTSSMAAVLNTGKPRTPDVVV 149 (281)
Q Consensus 81 --~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~-~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (281)
++|++|||||... +...+.|+..+++|+.++.++++++.+.+ + .+++|++||..++.+.+
T Consensus 78 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------- 148 (247)
T 3rwb_A 78 TGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFAGTP--------- 148 (247)
T ss_dssp HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHTCT---------
T ss_pred CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhccCCC---------
Confidence 7899999999633 22345577899999999999999976542 2 57999999987765321
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCC
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (281)
....|+.+|.+.+.+++.++.+ .|+++++++||.+.++............+..... .
T Consensus 149 -------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~-------~ 208 (247)
T 3rwb_A 149 -------------NMAAYVAAKGGVIGFTRALATELGKYNITANAVTPGLIESDGVKASPHNEAFGFVEMLQ-------A 208 (247)
T ss_dssp -------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSGGGGGHHHHHHHS-------S
T ss_pred -------------CchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCccccccChhHHHHHHhccc-------c
Confidence 1245999999999999999887 4899999999999887432211111111111111 1
Q ss_pred CccceeHHHHHHHHHHhhcCCCC--CccE-EEec
Q 023515 227 TFGWVNVKDVANAHIQAFEVPSA--NGRY-CLVE 257 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~~--~g~~-~~~~ 257 (281)
...+.+++|+|+++.+++..... .|+. ++.|
T Consensus 209 ~~r~~~pedva~~v~~L~s~~~~~itG~~i~vdG 242 (247)
T 3rwb_A 209 MKGKGQPEHIADVVSFLASDDARWITGQTLNVDA 242 (247)
T ss_dssp SCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred cCCCcCHHHHHHHHHHHhCccccCCCCCEEEECC
Confidence 23467999999999999986532 5644 4443
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=201.74 Aligned_cols=219 Identities=15% Similarity=0.100 Sum_probs=158.6
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---CC
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---GC 82 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---~~ 82 (281)
.+++|+++||||+|+||++++++|+++|++|++++|+.++.+.+. . . .++.++++|++|+++++++.+ ++
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~-~--~----~~~~~~~~D~~~~~~~~~~~~~~~~i 75 (246)
T 2ag5_A 3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELE-K--Y----PGIQTRVLDVTKKKQIDQFANEVERL 75 (246)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGG-G--S----TTEEEEECCTTCHHHHHHHHHHCSCC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-h--c----cCceEEEeeCCCHHHHHHHHHHhCCC
Confidence 356899999999999999999999999999999999764433322 1 1 268899999999988887654 78
Q ss_pred cEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeecCCC
Q 023515 83 DGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWF 154 (281)
Q Consensus 83 d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~ 154 (281)
|+||||||.... ...+.|+..+++|+.++.++++++.+.+ +.++||++||..++.+.+.
T Consensus 76 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------------- 142 (246)
T 2ag5_A 76 DVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKGVV------------- 142 (246)
T ss_dssp SEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBCCT-------------
T ss_pred CEEEECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechHhCcCCCC-------------
Confidence 999999996332 2334567889999999999999987632 4579999999866542110
Q ss_pred CChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCC---CccHHHHHHHHhCCCCCCCCCc
Q 023515 155 SDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTL---NTSAAAVLSLIKGAQTYPNVTF 228 (281)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 228 (281)
....|+.+|.+.+.+++.++.++ |++++++|||.+++|...... ..............+ ..
T Consensus 143 --------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 209 (246)
T 2ag5_A 143 --------NRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQK-----TG 209 (246)
T ss_dssp --------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTCT-----TS
T ss_pred --------CCccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCcCcCcchhhhhhcccCcHHHHHHHHhcCC-----CC
Confidence 12459999999999999998764 899999999999987521100 000111122222211 23
Q ss_pred cceeHHHHHHHHHHhhcCCC--CCccE-EEec
Q 023515 229 GWVNVKDVANAHIQAFEVPS--ANGRY-CLVE 257 (281)
Q Consensus 229 ~~i~~~D~a~~i~~~~~~~~--~~g~~-~~~~ 257 (281)
.+++++|+|+++++++.... ..|.. .+.|
T Consensus 210 ~~~~~~dvA~~v~~l~s~~~~~~tG~~i~vdg 241 (246)
T 2ag5_A 210 RFATAEEIAMLCVYLASDESAYVTGNPVIIDG 241 (246)
T ss_dssp SCEEHHHHHHHHHHHHSGGGTTCCSCEEEECT
T ss_pred CCCCHHHHHHHHHHHhCccccCCCCCEEEECC
Confidence 47899999999999997543 34644 4443
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.6e-28 Score=203.73 Aligned_cols=222 Identities=12% Similarity=-0.008 Sum_probs=161.1
Q ss_pred hccCCCeEEEeCCchH--HHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--
Q 023515 5 AAAAGKVVCVTGASGY--IASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-- 80 (281)
Q Consensus 5 ~~~~~~~ilItGatG~--iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-- 80 (281)
..+++|++|||||+|+ ||++++++|+++|++|++++|+....+.+..+.... .++.++++|++|.++++++++
T Consensus 27 ~~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~ 103 (293)
T 3grk_A 27 GLLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEEL---GAFVAGHCDVADAASIDAVFETL 103 (293)
T ss_dssp CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHH---TCEEEEECCTTCHHHHHHHHHHH
T ss_pred ccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc---CCceEEECCCCCHHHHHHHHHHH
Confidence 3467899999999977 999999999999999999999853333333322211 358899999999998888776
Q ss_pred -----CCcEeEEecccCC---------CCCCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCCCC
Q 023515 81 -----GCDGVCHTASPFY---------HDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTP 145 (281)
Q Consensus 81 -----~~d~Vih~a~~~~---------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~ 145 (281)
++|++|||||... ....+.|+..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 104 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~~----- 178 (293)
T 3grk_A 104 EKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAEKVMP----- 178 (293)
T ss_dssp HHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGTSBCT-----
T ss_pred HHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhccCCC-----
Confidence 7899999999753 23345577899999999999999999864 346899999987765221
Q ss_pred CeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCC
Q 023515 146 DVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT 222 (281)
Q Consensus 146 ~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~ 222 (281)
....|+.||++.+.+++.++.++ |+++++|+||.|.++...... .............
T Consensus 179 -----------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~-~~~~~~~~~~~~~-- 238 (293)
T 3grk_A 179 -----------------NYNVMGVAKAALEASVKYLAVDLGPQNIRVNAISAGPIKTLAASGIG-DFRYILKWNEYNA-- 238 (293)
T ss_dssp -----------------TTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC------C-CHHHHHHHHHHHS--
T ss_pred -----------------chHHHHHHHHHHHHHHHHHHHHHhHhCCEEEEEecCCCcchhhhccc-chHHHHHHHHhcC--
Confidence 12459999999999999998864 899999999999997643221 1122222222222
Q ss_pred CCCCCccceeHHHHHHHHHHhhcCCC--CCcc-EEEec
Q 023515 223 YPNVTFGWVNVKDVANAHIQAFEVPS--ANGR-YCLVE 257 (281)
Q Consensus 223 ~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~-~~~~~ 257 (281)
....+..++|+|+++++++.... ..|. +++.|
T Consensus 239 ---p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdG 273 (293)
T 3grk_A 239 ---PLRRTVTIDEVGDVGLYFLSDLSRSVTGEVHHADS 273 (293)
T ss_dssp ---TTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred ---CCCCCCCHHHHHHHHHHHcCccccCCcceEEEECC
Confidence 12347799999999999998643 3564 44543
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.4e-29 Score=207.03 Aligned_cols=225 Identities=14% Similarity=0.085 Sum_probs=164.2
Q ss_pred hccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 5 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
.++++|++|||||+|+||++++++|+++|++|++++|+.++........... ...++.++++|++|.++++++++
T Consensus 23 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 101 (277)
T 4fc7_A 23 DLLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGA-TGRRCLPLSMDVRAPPAVMAAVDQALK 101 (277)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHH-HSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh-cCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 3467899999999999999999999999999999999865543332222111 12478999999999988888776
Q ss_pred ---CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeee
Q 023515 81 ---GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (281)
Q Consensus 81 ---~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (281)
++|+||||||... ....+.|+..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 102 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------- 172 (277)
T 4fc7_A 102 EFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITATLGNRGQA--------- 172 (277)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCSHHHHTCT---------
T ss_pred HcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCCCCC---------
Confidence 7899999998532 22345577899999999999999997642 346899999987765321
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCC
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (281)
....|+.||++.+.+++.++.++ |+++++|+||.|.++.................... .
T Consensus 173 -------------~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~-----p 234 (277)
T 4fc7_A 173 -------------LQVHAGSAKAAVDAMTRHLAVEWGPQNIRVNSLAPGPISGTEGLRRLGGPQASLSTKVTAS-----P 234 (277)
T ss_dssp -------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSSSHHHHHHSCCHHHHHHHHHTS-----T
T ss_pred -------------CcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCEecchhhhhccCCHHHHHHHhccC-----C
Confidence 12459999999999999998875 89999999999998742110011112222232322 1
Q ss_pred CccceeHHHHHHHHHHhhcCCC--CCcc-EEEec
Q 023515 227 TFGWVNVKDVANAHIQAFEVPS--ANGR-YCLVE 257 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~--~~g~-~~~~~ 257 (281)
...+.+++|+|+++++++.... ..|. +++.|
T Consensus 235 ~~r~~~p~dvA~~v~fL~s~~~~~itG~~i~vdG 268 (277)
T 4fc7_A 235 LQRLGNKTEIAHSVLYLASPLASYVTGAVLVADG 268 (277)
T ss_dssp TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCCCcCHHHHHHHHHHHcCCccCCcCCCEEEECC
Confidence 2347899999999999998543 3564 44443
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=200.89 Aligned_cols=220 Identities=13% Similarity=0.030 Sum_probs=160.0
Q ss_pred cCCCeEEEeCCc--hHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 7 AAGKVVCVTGAS--GYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 7 ~~~~~ilItGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
+++|+++||||+ |+||++++++|+++|++|++++|+......+..+.... .++.++++|++|+++++++++
T Consensus 19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~---~~~~~~~~Dl~~~~~v~~~~~~~~~ 95 (285)
T 2p91_A 19 LEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPKLEKRVREIAKGF---GSDLVVKCDVSLDEDIKNLKKFLEE 95 (285)
T ss_dssp TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHT---TCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEEcCCCCHHHHHHHHHHHHH
Confidence 567899999999 99999999999999999999999863112222222111 236789999999998888775
Q ss_pred ---CCcEeEEecccCC---------CCCCCccchhhhhHHHHHHHHHHHhhhCCC--ccEEEEeccceeeecCCCCCCCC
Q 023515 81 ---GCDGVCHTASPFY---------HDAKDPQVELLDPAVKGTLNVLNSCAKFPS--IKRVVLTSSMAAVLNTGKPRTPD 146 (281)
Q Consensus 81 ---~~d~Vih~a~~~~---------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~~~v~~SS~~~~~~~~~~~~~~ 146 (281)
++|+||||||... ....+.++..+++|+.|+.++++++.+.+. .++||++||..++.+.+
T Consensus 96 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~------ 169 (285)
T 2p91_A 96 NWGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSYYGAEKVVP------ 169 (285)
T ss_dssp HTSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEECGGGTSBCT------
T ss_pred HcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEccchhccCCC------
Confidence 6899999999643 223345678999999999999999998632 36999999987654211
Q ss_pred eeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCC
Q 023515 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY 223 (281)
Q Consensus 147 ~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~ 223 (281)
....|+.||.+.+.+++.++.++ |+++++++||.+++|..... ..............+
T Consensus 170 ----------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-~~~~~~~~~~~~~~p-- 230 (285)
T 2p91_A 170 ----------------HYNVMGIAKAALESTVRYLAYDIAKHGHRINAISAGPVKTLAAYSI-TGFHLLMEHTTKVNP-- 230 (285)
T ss_dssp ----------------TTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCSCC--C-TTHHHHHHHHHHHST--
T ss_pred ----------------CccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCcccCchhhcc-cchHHHHHHHHhcCC--
Confidence 12459999999999999988764 89999999999999864321 111222222222221
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCCC--Cc-cEEEec
Q 023515 224 PNVTFGWVNVKDVANAHIQAFEVPSA--NG-RYCLVE 257 (281)
Q Consensus 224 ~~~~~~~i~~~D~a~~i~~~~~~~~~--~g-~~~~~~ 257 (281)
...+.+++|+|+++++++..... .| .|++.+
T Consensus 231 ---~~~~~~~~dva~~~~~l~s~~~~~~tG~~~~vdg 264 (285)
T 2p91_A 231 ---FGKPITIEDVGDTAVFLCSDWARAITGEVVHVDN 264 (285)
T ss_dssp ---TSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred ---CCCCcCHHHHHHHHHHHcCCcccCCCCCEEEECC
Confidence 12367999999999999975332 45 455544
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=202.89 Aligned_cols=221 Identities=17% Similarity=0.151 Sum_probs=153.7
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++|+++||||+|+||++++++|+++|++|++++|+.++.+.+.... ..++.++++|++|.++++++++
T Consensus 6 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (261)
T 3n74_A 6 SLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI-----GDAALAVAADISKEADVDAAVEAALSK 80 (261)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CTTEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh-----CCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 467899999999999999999999999999999999876544433322 2468999999999998888776
Q ss_pred --CCcEeEEecccCCC------CCCCccchhhhhHHHHHHHHHHHhhhCCC-------ccEEEEeccceeeecCCCCCCC
Q 023515 81 --GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFPS-------IKRVVLTSSMAAVLNTGKPRTP 145 (281)
Q Consensus 81 --~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-------~~~~v~~SS~~~~~~~~~~~~~ 145 (281)
++|+||||||.... ...+.++..+++|+.++.++++++.+.+. ..+||++||..++.+.+
T Consensus 81 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~----- 155 (261)
T 3n74_A 81 FGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGRPRP----- 155 (261)
T ss_dssp HSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTSCCT-----
T ss_pred cCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcCCCC-----
Confidence 78999999996431 12345678899999999999999987532 34699999987654211
Q ss_pred CeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCC
Q 023515 146 DVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT 222 (281)
Q Consensus 146 ~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~ 222 (281)
....|+.+|++.+.+++.++.+ .|+++++++||.+.++...................
T Consensus 156 -----------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~--- 215 (261)
T 3n74_A 156 -----------------NLAWYNATKGWVVSVTKALAIELAPAKIRVVALNPVAGETPLLTTFMGEDSEEIRKKFRD--- 215 (261)
T ss_dssp -----------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC---------------------------
T ss_pred -----------------CccHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccChhhhhhcccCcHHHHHHHhh---
Confidence 1245999999999999999887 48999999999999886432211111111111111
Q ss_pred CCCCCccceeHHHHHHHHHHhhcCCC--CCc-cEEEec
Q 023515 223 YPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (281)
Q Consensus 223 ~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~ 257 (281)
......+++++|+|+++++++.... ..| .+++.|
T Consensus 216 -~~~~~~~~~~~dva~~~~~l~s~~~~~itG~~i~vdg 252 (261)
T 3n74_A 216 -SIPMGRLLKPDDLAEAAAFLCSPQASMITGVALDVDG 252 (261)
T ss_dssp --CTTSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred -cCCcCCCcCHHHHHHHHHHHcCCcccCcCCcEEEecC
Confidence 1123458899999999999997543 356 445543
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-28 Score=199.93 Aligned_cols=221 Identities=19% Similarity=0.125 Sum_probs=161.5
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++|+|+||||+|+||++++++|+++|++|++++|+.++.+.+....... ...++.++.+|++|+++++++++
T Consensus 5 ~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (248)
T 2pnf_A 5 LQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANK-YGVKAHGVEMNLLSEESINKAFEEIYNLV 83 (248)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH-HCCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhh-cCCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 56899999999999999999999999999999999765443332221110 02468899999999999888876
Q ss_pred -CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 -~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
++|+||||||.... ...+.++..+++|+.++.++++++.+.+ +.++||++||..++++.+
T Consensus 84 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~----------- 152 (248)
T 2pnf_A 84 DGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGFTGNV----------- 152 (248)
T ss_dssp SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHTCEEEEEECCHHHHHCCT-----------
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhcCCCC-----------
Confidence 79999999996432 2234466889999999988888876531 467999999987665221
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCc
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (281)
....|+.+|.+.+.+++.+++++ |+++++++||.++++..... ............+ ..
T Consensus 153 -----------~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~---~~~~~~~~~~~~~-----~~ 213 (248)
T 2pnf_A 153 -----------GQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMTAVL---SEEIKQKYKEQIP-----LG 213 (248)
T ss_dssp -----------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGS---CHHHHHHHHHTCT-----TS
T ss_pred -----------CCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeceecCchhhhc---cHHHHHHHHhcCC-----CC
Confidence 12459999999999999988764 89999999999998864321 1111122222221 24
Q ss_pred cceeHHHHHHHHHHhhcCCC--CCc-cEEEecC
Q 023515 229 GWVNVKDVANAHIQAFEVPS--ANG-RYCLVER 258 (281)
Q Consensus 229 ~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~~ 258 (281)
.+++++|+|+++++++.... ..| .|++.++
T Consensus 214 ~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg 246 (248)
T 2pnf_A 214 RFGSPEEVANVVLFLCSELASYITGEVIHVNGG 246 (248)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CccCHHHHHHHHHHHhCchhhcCCCcEEEeCCC
Confidence 58899999999999997532 235 6666543
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=204.59 Aligned_cols=221 Identities=16% Similarity=0.147 Sum_probs=154.6
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEE-cCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASV-RDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.++|+||||||+|+||++++++|+++|++|+++. |+.+..+.+....... ..++.++++|++|.++++++++
T Consensus 24 ~~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 101 (272)
T 4e3z_A 24 SDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITES--GGEAVAIPGDVGNAADIAAMFSAVDRQ 101 (272)
T ss_dssp CCSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 3578999999999999999999999999998874 4443333333322221 2578999999999998888776
Q ss_pred --CCcEeEEecccCCC------CCCCccchhhhhHHHHHHHHHHHhhhCC------CccEEEEeccceeeecCCCCCCCC
Q 023515 81 --GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFP------SIKRVVLTSSMAAVLNTGKPRTPD 146 (281)
Q Consensus 81 --~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~~------~~~~~v~~SS~~~~~~~~~~~~~~ 146 (281)
++|+||||||.... ...+.++..+++|+.++.++++++.+.+ +.++||++||..++.+...
T Consensus 102 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----- 176 (272)
T 4e3z_A 102 FGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGSAT----- 176 (272)
T ss_dssp HSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHHCCTT-----
T ss_pred CCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhccCCCC-----
Confidence 68999999997432 1334567899999999999999988752 2468999999887663210
Q ss_pred eeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCC
Q 023515 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY 223 (281)
Q Consensus 147 ~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~ 223 (281)
....|+.+|++.+.+++.++.++ |+++++++||.|+++...... ...........
T Consensus 177 ----------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~--~~~~~~~~~~~---- 234 (272)
T 4e3z_A 177 ----------------QYVDYAASKAAIDTFTIGLAREVAAEGIRVNAVRPGIIETDLHASGG--LPDRAREMAPS---- 234 (272)
T ss_dssp ----------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC--------------------C----
T ss_pred ----------------CcchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCCcCCcccccC--ChHHHHHHhhc----
Confidence 12349999999999999998875 899999999999998643210 11111111111
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCCC--Cc-cEEEec
Q 023515 224 PNVTFGWVNVKDVANAHIQAFEVPSA--NG-RYCLVE 257 (281)
Q Consensus 224 ~~~~~~~i~~~D~a~~i~~~~~~~~~--~g-~~~~~~ 257 (281)
.....+.+++|+|+++++++..... .| .|++.|
T Consensus 235 -~~~~~~~~~edvA~~i~~l~s~~~~~~tG~~i~vdg 270 (272)
T 4e3z_A 235 -VPMQRAGMPEEVADAILYLLSPSASYVTGSILNVSG 270 (272)
T ss_dssp -CTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred -CCcCCCcCHHHHHHHHHHHhCCccccccCCEEeecC
Confidence 1233467899999999999975432 45 556654
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.8e-28 Score=204.88 Aligned_cols=229 Identities=17% Similarity=0.178 Sum_probs=162.2
Q ss_pred hhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC---------cchhhhhhh-ccCCCCcEEEEEcCCCCcC
Q 023515 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND---------PKKTRHLLA-LDGASERLQLFKANLLEEG 73 (281)
Q Consensus 4 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~---------~~~~~~~~~-~~~~~~~~~~~~~D~~~~~ 73 (281)
|..+++|++|||||+|+||+++++.|+++|++|++++|+... .+.+..... ......++.++++|++|++
T Consensus 41 m~~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~ 120 (317)
T 3oec_A 41 MNRLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLA 120 (317)
T ss_dssp -CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred hhccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHH
Confidence 445678999999999999999999999999999999886322 112221111 1111357899999999999
Q ss_pred cHHHHhc-------CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC----CccEEEEeccceeee
Q 023515 74 SFDSIVD-------GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP----SIKRVVLTSSMAAVL 137 (281)
Q Consensus 74 ~~~~~~~-------~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~~~v~~SS~~~~~ 137 (281)
+++++++ ++|++|||||... ....+.|+..+++|+.++.++++++.+.+ ..++||++||..++.
T Consensus 121 ~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~~~~ 200 (317)
T 3oec_A 121 SLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLR 200 (317)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGGGSS
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHHhcC
Confidence 8888776 7899999999632 22345577899999999999999997642 246799999987765
Q ss_pred cCCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCC---------C
Q 023515 138 NTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQP---------T 205 (281)
Q Consensus 138 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~---------~ 205 (281)
+.+ ....|+.||.+.+.+++.++.++ |+++++|+||.|+++.... .
T Consensus 201 ~~~----------------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~ 258 (317)
T 3oec_A 201 GAP----------------------GQSHYAASKHGVQGLMLSLANEVGRHNIRVNSVNPGAVNTEMALNEKLLKMFLPH 258 (317)
T ss_dssp CCT----------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHCHHHHHHHCTT
T ss_pred CCC----------------------CCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCccccchhhhhhhhhh
Confidence 221 12459999999999999998874 8999999999999874211 0
Q ss_pred C-CccHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCc-cEEEec
Q 023515 206 L-NTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (281)
Q Consensus 206 ~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~ 257 (281)
. .............. ......|++++|+|+++++++.... ..| .+++.|
T Consensus 259 ~~~~~~~~~~~~~~~~---~~~p~~~~~pedvA~av~fL~s~~a~~itG~~i~vdG 311 (317)
T 3oec_A 259 LENPTREDAAELFSQL---TLLPIPWVEPEDVSNAVAWLASDEARYIHGAAIPVDG 311 (317)
T ss_dssp CSSCCHHHHHHHHTTT---CSSSSSSBCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred ccccchhHHHHHHhhh---ccCCCCCCCHHHHHHHHHHHcCCcccCCCCCEEEECc
Confidence 0 00111111111111 1122568899999999999997543 356 455544
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=200.86 Aligned_cols=220 Identities=17% Similarity=0.185 Sum_probs=158.0
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEE-EcCCCCcchhhhhhhccCCCCcEEE-EEcCCCCcCcHHHHhc------
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKAS-VRDPNDPKKTRHLLALDGASERLQL-FKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~-~~~D~~~~~~~~~~~~------ 80 (281)
||+|+||||+|+||++++++|+++|++|+++ +|+.++.+.+....... ..++.+ +.+|++|.++++++++
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRR--GSPLVAVLGANLLEAEAATALVHQAAEVL 78 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHHHHHHHT--TCSCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCceEEEEeccCCCHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999998 67654433332222111 134566 8999999988887764
Q ss_pred -CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 -~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
++|+||||||.... ...+.++..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 79 ~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~----------- 147 (245)
T 2ph3_A 79 GGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKARFGRIVNITSVVGILGNP----------- 147 (245)
T ss_dssp TCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCS-----------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCEEEEEeChhhccCCC-----------
Confidence 79999999996432 2334567889999999877777766531 568999999987765221
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCc
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (281)
....|+.+|.+.+.+++.+++++ |++++++|||.++++..... ............+ ..
T Consensus 148 -----------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~---~~~~~~~~~~~~~-----~~ 208 (245)
T 2ph3_A 148 -----------GQANYVASKAGLIGFTRAVAKEYAQRGITVNAVAPGFIETEMTERL---PQEVKEAYLKQIP-----AG 208 (245)
T ss_dssp -----------SBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTS---CHHHHHHHHHTCT-----TC
T ss_pred -----------CCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEEEeecCcchhhc---CHHHHHHHHhcCC-----CC
Confidence 12459999999999999988765 89999999999998753221 1122222223221 24
Q ss_pred cceeHHHHHHHHHHhhcCCC--CCc-cEEEecCCC
Q 023515 229 GWVNVKDVANAHIQAFEVPS--ANG-RYCLVERVS 260 (281)
Q Consensus 229 ~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~~~~ 260 (281)
.+++++|+|+++++++.... ..| .|++.++..
T Consensus 209 ~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~ 243 (245)
T 2ph3_A 209 RFGRPEEVAEAVAFLVSEKAGYITGQTLCVDGGLT 243 (245)
T ss_dssp SCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTCS
T ss_pred CCcCHHHHHHHHHHHhCcccccccCCEEEECCCCC
Confidence 58899999999999997643 235 566665533
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-28 Score=201.88 Aligned_cols=216 Identities=18% Similarity=0.141 Sum_probs=159.8
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++|+++||||+|+||++++++|+++|++|++++|+.++.+.+.+.. ..++.++++|++|.++++++++
T Consensus 3 ~l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~~~ 77 (263)
T 2a4k_A 3 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL-----EAEAIAVVADVSDPKAVEAVFAEALEE 77 (263)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC-----CSSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----cCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999999865433322211 1468899999999998888775
Q ss_pred --CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCCC-ccEEEEeccceeeecCCCCCCCCeeeecC
Q 023515 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (281)
Q Consensus 81 --~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~~e~ 152 (281)
++|+||||||.... ...+.|+..+++|+.++.++++++.+.+. .++||++||..++ +.+
T Consensus 78 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~-~~~------------ 144 (263)
T 2a4k_A 78 FGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGL-GAF------------ 144 (263)
T ss_dssp HSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTC-CHH------------
T ss_pred cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhc-CCC------------
Confidence 57999999996332 12344678899999999999999998642 3689999998665 210
Q ss_pred CCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCcc
Q 023515 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG 229 (281)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (281)
....|+.+|.+.+.+++.++.++ |+++++++||.+.++..... ............+ ...
T Consensus 145 ----------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~---~~~~~~~~~~~~p-----~~~ 206 (263)
T 2a4k_A 145 ----------GLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAGL---PPWAWEQEVGASP-----LGR 206 (263)
T ss_dssp ----------HHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTTS---CHHHHHHHHHTST-----TCS
T ss_pred ----------CcHHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCcCcCchhhhc---CHHHHHHHHhcCC-----CCC
Confidence 12359999999999999988764 89999999999999864321 1222222222221 224
Q ss_pred ceeHHHHHHHHHHhhcCCC--CCccE-EEec
Q 023515 230 WVNVKDVANAHIQAFEVPS--ANGRY-CLVE 257 (281)
Q Consensus 230 ~i~~~D~a~~i~~~~~~~~--~~g~~-~~~~ 257 (281)
+++++|+|+++++++.... ..|.+ .+.|
T Consensus 207 ~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdg 237 (263)
T 2a4k_A 207 AGRPEEVAQAALFLLSEESAYITGQALYVDG 237 (263)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CcCHHHHHHHHHHHhCccccCCcCCEEEECC
Confidence 7899999999999997543 34644 4444
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.8e-28 Score=197.14 Aligned_cols=206 Identities=23% Similarity=0.162 Sum_probs=156.5
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------CC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------GC 82 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------~~ 82 (281)
+|+|+||||+|+||++++++|+++|++|++++|+.. . .++.++++|++|+++++++++ ++
T Consensus 2 ~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~-~-------------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 67 (242)
T 1uay_A 2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE-G-------------EDLIYVEGDVTREEDVRRAVARAQEEAPL 67 (242)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC-S-------------SSSEEEECCTTCHHHHHHHHHHHHHHSCE
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc-c-------------cceEEEeCCCCCHHHHHHHHHHHHhhCCc
Confidence 679999999999999999999999999999999865 1 235789999999999988887 78
Q ss_pred cEeEEecccCCCC-----CCC----ccchhhhhHHHHHHHHHHHhhhCCC---------ccEEEEeccceeeecCCCCCC
Q 023515 83 DGVCHTASPFYHD-----AKD----PQVELLDPAVKGTLNVLNSCAKFPS---------IKRVVLTSSMAAVLNTGKPRT 144 (281)
Q Consensus 83 d~Vih~a~~~~~~-----~~~----~~~~~~~~n~~~~~~l~~~~~~~~~---------~~~~v~~SS~~~~~~~~~~~~ 144 (281)
|+||||||..... ..+ .++..+++|+.++.++++++.+.+. .++||++||..++.+.+
T Consensus 68 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~---- 143 (242)
T 1uay_A 68 FAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQI---- 143 (242)
T ss_dssp EEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCCT----
T ss_pred eEEEEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCCC----
Confidence 9999999863321 112 5678899999999999999987521 13899999987765211
Q ss_pred CCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCC
Q 023515 145 PDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ 221 (281)
Q Consensus 145 ~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~ 221 (281)
....|+.+|.+.+.+++.++.++ |++++++|||.++|+..... ............+
T Consensus 144 ------------------~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~---~~~~~~~~~~~~~ 202 (242)
T 1uay_A 144 ------------------GQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGL---PEKAKASLAAQVP 202 (242)
T ss_dssp ------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTS---CHHHHHHHHTTCC
T ss_pred ------------------CCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccCcchhhhcc---chhHHHHHHhhCC
Confidence 12459999999999999988764 89999999999999753321 1122222222222
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCCCCCc-cEEEec
Q 023515 222 TYPNVTFGWVNVKDVANAHIQAFEVPSANG-RYCLVE 257 (281)
Q Consensus 222 ~~~~~~~~~i~~~D~a~~i~~~~~~~~~~g-~~~~~~ 257 (281)
. ...+++++|+|+++++++.+....| .|++.+
T Consensus 203 ~----~~~~~~~~dva~~~~~l~~~~~~~G~~~~v~g 235 (242)
T 1uay_A 203 F----PPRLGRPEEYAALVLHILENPMLNGEVVRLDG 235 (242)
T ss_dssp S----SCSCCCHHHHHHHHHHHHHCTTCCSCEEEEST
T ss_pred C----cccCCCHHHHHHHHHHHhcCCCCCCcEEEEcC
Confidence 1 1347899999999999998754456 566654
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=9e-29 Score=208.42 Aligned_cols=246 Identities=14% Similarity=0.142 Sum_probs=168.5
Q ss_pred hhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccC-CCCcEEEEEcCCCCcCcHHHHhc--
Q 023515 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDG-ASERLQLFKANLLEEGSFDSIVD-- 80 (281)
Q Consensus 4 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~-- 80 (281)
|+.+++|++|||||+|+||++++++|+++|++|++++|+.++.+.+........ ...++.++++|++|+++++++++
T Consensus 21 m~~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 100 (297)
T 1xhl_A 21 MARFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTT 100 (297)
T ss_dssp --CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHH
Confidence 444678999999999999999999999999999999998654443322221111 01168999999999998888776
Q ss_pred -----CCcEeEEecccCCC-------CCCCccchhhhhHHHHHHHHHHHhhhCC--CccEEEEeccceeeecCCCCCCCC
Q 023515 81 -----GCDGVCHTASPFYH-------DAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPD 146 (281)
Q Consensus 81 -----~~d~Vih~a~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~ 146 (281)
++|+||||||.... ...+.|+..+++|+.++.++++++.+.+ ..++||++||..++.+..
T Consensus 101 ~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~IV~isS~~~~~~~~------ 174 (297)
T 1xhl_A 101 LAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQAH------ 174 (297)
T ss_dssp HHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSSSCC------
T ss_pred HHhcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCEEEEEcCchhccCCC------
Confidence 78999999996322 2234567899999999999999998752 117999999987654210
Q ss_pred eeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCC-CccHH-HHHHHHhCC-
Q 023515 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTL-NTSAA-AVLSLIKGA- 220 (281)
Q Consensus 147 ~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~-~~~~~-~~~~~~~~~- 220 (281)
+ ....|+.+|.+.+.+++.++.+ .|+++++++||.+.++...... ..... .........
T Consensus 175 -------~--------~~~~Y~asKaa~~~l~~~la~el~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~ 239 (297)
T 1xhl_A 175 -------S--------GYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRK 239 (297)
T ss_dssp -------T--------TSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCT
T ss_pred -------C--------CcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcCccccccccccccccchHHHHHHHH
Confidence 0 1245999999999999998865 5899999999999987532110 00000 001111111
Q ss_pred CCCCCCCccceeHHHHHHHHHHhhcCC---CCCc-cEEEec-CCCCHHHHHHHHHHh
Q 023515 221 QTYPNVTFGWVNVKDVANAHIQAFEVP---SANG-RYCLVE-RVSHYSEIVNIIREL 272 (281)
Q Consensus 221 ~~~~~~~~~~i~~~D~a~~i~~~~~~~---~~~g-~~~~~~-~~~t~~e~~~~i~~~ 272 (281)
... ....+++++|+|+++++++... ...| .+++.| ....+.+.+..+.+.
T Consensus 240 ~~~--p~~r~~~pedvA~~v~~l~s~~~~~~itG~~i~vdGG~~~~~~~~~~~~~~~ 294 (297)
T 1xhl_A 240 ECI--PVGHCGKPEEIANIIVFLADRNLSSYIIGQSIVADGGSTLVMGMQTHDLMSV 294 (297)
T ss_dssp TTC--TTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGGCCGGGGSCHHHH
T ss_pred hcC--CCCCCcCHHHHHHHHHHHhCCcccCCccCcEEEECCCccccccccccchhhh
Confidence 111 1234789999999999999754 3356 455544 345555555544444
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.3e-28 Score=200.29 Aligned_cols=206 Identities=17% Similarity=0.145 Sum_probs=153.1
Q ss_pred hhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 4 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
|+.+++|+||||||+|+||++++++|+++|++|++++|+.++...+....... ..++.++++|++|.+++.++++
T Consensus 24 m~~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~ 101 (262)
T 3rkr_A 24 MSSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAA--GGEAESHACDLSHSDAIAAFATGVL 101 (262)
T ss_dssp -CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred hhccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHh--CCceeEEEecCCCHHHHHHHHHHHH
Confidence 55577899999999999999999999999999999999876554443332222 2578999999999998888775
Q ss_pred ----CCcEeEEecccCC------CCCCCccchhhhhHHHHHHHHHHHhhhC---CCccEEEEeccceeeecCCCCCCCCe
Q 023515 81 ----GCDGVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDV 147 (281)
Q Consensus 81 ----~~d~Vih~a~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (281)
++|+||||||... ....+.++..+++|+.++.++++++.+. .+.++||++||..++.+.+
T Consensus 102 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~------- 174 (262)
T 3rkr_A 102 AAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSLAGKNPVA------- 174 (262)
T ss_dssp HHHSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEEECSSCSSCCCT-------
T ss_pred HhcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCCC-------
Confidence 5899999998621 2233456789999999999999998763 2567999999987764211
Q ss_pred eeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCC
Q 023515 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP 224 (281)
Q Consensus 148 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (281)
....|+.+|++.+.+++.++.+ .|+++++++||.+.++...... . .
T Consensus 175 ---------------~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~-------~----~----- 223 (262)
T 3rkr_A 175 ---------------DGAAYTASKWGLNGLMTSAAEELRQHQVRVSLVAPGSVRTEFGVGLS-------A----K----- 223 (262)
T ss_dssp ---------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC---------------------------
T ss_pred ---------------CCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCCcCCcccccc-------c----c-----
Confidence 1245999999999999998876 4899999999999886532110 0 0
Q ss_pred CCCccceeHHHHHHHHHHhhcCCCC
Q 023515 225 NVTFGWVNVKDVANAHIQAFEVPSA 249 (281)
Q Consensus 225 ~~~~~~i~~~D~a~~i~~~~~~~~~ 249 (281)
.....+++++|+|+++++++.....
T Consensus 224 ~~~~~~~~p~dvA~~v~~l~s~~~~ 248 (262)
T 3rkr_A 224 KSALGAIEPDDIADVVALLATQADQ 248 (262)
T ss_dssp -----CCCHHHHHHHHHHHHTCCTT
T ss_pred cccccCCCHHHHHHHHHHHhcCccc
Confidence 0123477999999999999987654
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-28 Score=200.93 Aligned_cols=222 Identities=14% Similarity=0.135 Sum_probs=159.1
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++|++|||||+|+||++++++|+++|++|++++|+.+ ......+ .. ...++.++++|++|+++++++++
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~l-~~--~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 77 (255)
T 2q2v_A 2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP-APALAEI-AR--HGVKAVHHPADLSDVAQIEALFALAEREF 77 (255)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC-HHHHHHH-HT--TSCCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch-HHHHHHH-Hh--cCCceEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 45899999999999999999999999999999999875 2221222 11 12468899999999999888887
Q ss_pred -CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 -~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
++|+||||||.... ...+.|+..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 78 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~----------- 146 (255)
T 2q2v_A 78 GGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARNWGRIINIASVHGLVGST----------- 146 (255)
T ss_dssp SSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCCT-----------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcCchhccCCC-----------
Confidence 79999999996321 2344567899999999998888876431 567999999987764211
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHH---H----HHHHhCCC
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAA---V----LSLIKGAQ 221 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~---~----~~~~~~~~ 221 (281)
....|+.+|.+.+.+++.++.++ |+++++++||.+++|............ . .......
T Consensus 147 -----------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 214 (255)
T 2q2v_A 147 -----------GKAAYVAAKHGVVGLTKVVGLETATSNVTCNAICPGWVLTPLVQKQIDDRAANGGDPLQAQHDLLAEK- 214 (255)
T ss_dssp -----------TBHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSBCCHHHHHHHHHHHHHTCCHHHHHHHHHTTT-
T ss_pred -----------CchhHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcCcchhhhcccccccccchHHHHHHHHhcc-
Confidence 12459999999999999998874 799999999999987522100000000 0 1110111
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCCC--CCc-cEEEecC
Q 023515 222 TYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVER 258 (281)
Q Consensus 222 ~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~~ 258 (281)
.....+++++|+|+++++++.... ..| .|++.|+
T Consensus 215 ---~p~~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG 251 (255)
T 2q2v_A 215 ---QPSLAFVTPEHLGELVLFLCSEAGSQVRGAAWNVDGG 251 (255)
T ss_dssp ---CTTCCCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred ---CCCCCCcCHHHHHHHHHHHhCCccCCCCCCEEEECCC
Confidence 123458999999999999997643 235 4555443
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-28 Score=204.45 Aligned_cols=230 Identities=13% Similarity=0.092 Sum_probs=159.8
Q ss_pred hhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhh-ccCCCCcEEEEEcCCCCcCcHHHHhc--
Q 023515 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLA-LDGASERLQLFKANLLEEGSFDSIVD-- 80 (281)
Q Consensus 4 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~-- 80 (281)
|+.+++|++|||||+|+||++++++|+++|++|++++|.....+.++.... ......++.++++|++|.++++++++
T Consensus 6 ~~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 85 (262)
T 3ksu_A 6 YHDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFA 85 (262)
T ss_dssp CSCCTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHH
Confidence 455778999999999999999999999999999999886544333333221 11123578999999999999888876
Q ss_pred -----CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCCCCCeee
Q 023515 81 -----GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (281)
Q Consensus 81 -----~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (281)
++|++|||||... ....+.|+..+++|+.++.++++++.+.+ +.+++|++||..+..+.+
T Consensus 86 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~--------- 156 (262)
T 3ksu_A 86 EKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAAYTG--------- 156 (262)
T ss_dssp HHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHHHHHHC---------
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhhccCCC---------
Confidence 7899999999632 22345577889999999999999999864 346899999987765321
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCC
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (281)
....|+.||.+.+.+++.++.++ |+++++++||.|.++....... ......... ...
T Consensus 157 -------------~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~--~~~~~~~~~-----~~~ 216 (262)
T 3ksu_A 157 -------------FYSTYAGNKAPVEHYTRAASKELMKQQISVNAIAPGPMDTSFFYGQET--KESTAFHKS-----QAM 216 (262)
T ss_dssp -------------CCCC-----CHHHHHHHHHHHHTTTTTCEEEEEEECCCCTHHHHTCC-------------------C
T ss_pred -------------CCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCccccccCc--hHHHHHHHh-----cCc
Confidence 12349999999999999999875 8999999999998764211110 000000111 012
Q ss_pred CccceeHHHHHHHHHHhhcCCC-CCcc-EEEecCCCCH
Q 023515 227 TFGWVNVKDVANAHIQAFEVPS-ANGR-YCLVERVSHY 262 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~-~~g~-~~~~~~~~t~ 262 (281)
...+.+++|+|+++++++.... ..|. +++.|+...+
T Consensus 217 ~~r~~~pedvA~~v~~L~s~~~~itG~~i~vdGg~~~~ 254 (262)
T 3ksu_A 217 GNQLTKIEDIAPIIKFLTTDGWWINGQTIFANGGYTTR 254 (262)
T ss_dssp CCCSCCGGGTHHHHHHHHTTTTTCCSCEEEESTTCCCC
T ss_pred ccCCCCHHHHHHHHHHHcCCCCCccCCEEEECCCccCC
Confidence 2347899999999999998622 2564 4555554433
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.4e-28 Score=199.32 Aligned_cols=216 Identities=15% Similarity=0.089 Sum_probs=157.8
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCE-EEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCc-CcHHHHhc----
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYT-VKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEE-GSFDSIVD---- 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~---- 80 (281)
+++|+++||||+|+||++++++|+++|++ |++++|+... +.+..+..... ..++.++.+|++|+ +++.++++
T Consensus 3 l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~-~~~~~l~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (254)
T 1sby_A 3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENP-TALAELKAINP-KVNITFHTYDVTVPVAESKKLLKKIFD 80 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCH-HHHHHHHHHCT-TSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchH-HHHHHHHHhCC-CceEEEEEEecCCChHHHHHHHHHHHH
Confidence 56899999999999999999999999996 9999997642 22233222211 24689999999998 77777765
Q ss_pred ---CCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCC------ccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 ---GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS------IKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 ---~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
++|+||||||... .+.++..+++|+.++.++++++.+.+. .++||++||..++.+.+
T Consensus 81 ~~g~id~lv~~Ag~~~---~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~----------- 146 (254)
T 1sby_A 81 QLKTVDILINGAGILD---DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAIH----------- 146 (254)
T ss_dssp HHSCCCEEEECCCCCC---TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCT-----------
T ss_pred hcCCCCEEEECCccCC---HHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhccCCC-----------
Confidence 7899999999753 456779999999999999999987521 35799999987754211
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCcc--HHHHHHHHhCCCCCCCC
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTS--AAAVLSLIKGAQTYPNV 226 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 226 (281)
....|+.||++.+.+++.++.+ .|+++++++||.+.++......... ...+......
T Consensus 147 -----------~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~------- 208 (254)
T 1sby_A 147 -----------QVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLLS------- 208 (254)
T ss_dssp -----------TSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCCGGGSCTTHHHHHTT-------
T ss_pred -----------CchHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCccCccccccchhhhhhHHHHHHHhc-------
Confidence 1245999999999999998876 5899999999999987422110000 0011122211
Q ss_pred CccceeHHHHHHHHHHhhcCCCCCccEEEec
Q 023515 227 TFGWVNVKDVANAHIQAFEVPSANGRYCLVE 257 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~~~g~~~~~~ 257 (281)
..+.+++|+|++++++++....+..|++.|
T Consensus 209 -~~~~~~~dvA~~i~~~~~~~~~G~~~~v~g 238 (254)
T 1sby_A 209 -HPTQTSEQCGQNFVKAIEANKNGAIWKLDL 238 (254)
T ss_dssp -SCCEEHHHHHHHHHHHHHHCCTTCEEEEET
T ss_pred -CCCCCHHHHHHHHHHHHHcCCCCCEEEEeC
Confidence 234599999999999997544333666665
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.1e-28 Score=199.84 Aligned_cols=214 Identities=16% Similarity=0.094 Sum_probs=158.8
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
..++|+||||||+|+||++++++|+++|++|++++|+..... ..+.++++|++|.+++.++++
T Consensus 11 ~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~------------~~~~~~~~Dv~~~~~v~~~~~~~~~~ 78 (269)
T 3vtz_A 11 EFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDV------------NVSDHFKIDVTNEEEVKEAVEKTTKK 78 (269)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--CT------------TSSEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhcc------------CceeEEEecCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999999865431 246788999999998888776
Q ss_pred --CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 --~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|+||||||.... ...+.|+..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 79 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 148 (269)
T 3vtz_A 79 YGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHGSIINIASVQSYAATK---------- 148 (269)
T ss_dssp HSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSBCT----------
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhccCCC----------
Confidence 78999999996332 2334567889999999999999988742 457999999987765221
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc--CCcEEEEcCCcccCCCCCC--------CCCccHHHHHHHHhCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK--SIDLVTINPAMVIGPLLQP--------TLNTSAAAVLSLIKGA 220 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--g~~~~~irp~~v~g~~~~~--------~~~~~~~~~~~~~~~~ 220 (281)
....|+.||++.+.+++.++.++ ++++++|+||.|.++.... ................
T Consensus 149 ------------~~~~Y~asKaa~~~l~~~la~e~~~~i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (269)
T 3vtz_A 149 ------------NAAAYVTSKHALLGLTRSVAIDYAPKIRCNAVCPGTIMTPMVIKAAKMEVGEDENAVERKIEEWGRQH 216 (269)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCHHHHHHHHHHHCCSTTHHHHHHHHHHHHS
T ss_pred ------------CChhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEECCCcCcchhhhhhccccccchhhHHHHHHHHhcC
Confidence 12459999999999999999876 8999999999999874210 0000011122222211
Q ss_pred CCCCCCCccceeHHHHHHHHHHhhcCCC--CCc-cEEEecC
Q 023515 221 QTYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVER 258 (281)
Q Consensus 221 ~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~~ 258 (281)
....+.+++|+|+++++++.... ..| .+++.|+
T Consensus 217 -----p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG 252 (269)
T 3vtz_A 217 -----PMGRIGRPEEVAEVVAFLASDRSSFITGACLTVDGG 252 (269)
T ss_dssp -----TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred -----CCCCCcCHHHHHHHHHHHhCCccCCCcCcEEEECCC
Confidence 23457899999999999998643 245 4555543
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.9e-28 Score=200.33 Aligned_cols=221 Identities=14% Similarity=0.085 Sum_probs=161.1
Q ss_pred ccCCCeEEEeCCc--hHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 6 AAAGKVVCVTGAS--GYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 6 ~~~~~~ilItGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
++++|+++||||+ |+||++++++|+++|++|++++|+......+..+.... ..+.++++|++|++++.++++
T Consensus 3 ~l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~v~~~~~~~~ 79 (275)
T 2pd4_A 3 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQEL---NSPYVYELDVSKEEHFKSLYNSVK 79 (275)
T ss_dssp TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHT---TCCCEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCcEEEEcCCCCHHHHHHHHHHHH
Confidence 4668999999999 99999999999999999999999875222222222211 237889999999988888776
Q ss_pred ----CCcEeEEecccCC---------CCCCCccchhhhhHHHHHHHHHHHhhhCCC-ccEEEEeccceeeecCCCCCCCC
Q 023515 81 ----GCDGVCHTASPFY---------HDAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAVLNTGKPRTPD 146 (281)
Q Consensus 81 ----~~d~Vih~a~~~~---------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~ 146 (281)
++|+||||||... ....+.++..+++|+.++.++++++.+.+. .++||++||..+..+.+
T Consensus 80 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~------ 153 (275)
T 2pd4_A 80 KDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMA------ 153 (275)
T ss_dssp HHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCT------
T ss_pred HHcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEecchhcCCCC------
Confidence 6899999999643 223445678999999999999999998642 36899999976654211
Q ss_pred eeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCC
Q 023515 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY 223 (281)
Q Consensus 147 ~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~ 223 (281)
....|+.||.+.+.+++.++.++ |+++++++||.|.++..... ..............+
T Consensus 154 ----------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~-~~~~~~~~~~~~~~p-- 214 (275)
T 2pd4_A 154 ----------------HYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGI-ADFRMILKWNEINAP-- 214 (275)
T ss_dssp ----------------TCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGS-TTHHHHHHHHHHHST--
T ss_pred ----------------CchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCccccchhhhc-cccHHHHHHHHhcCC--
Confidence 12459999999999999998875 89999999999999864321 111222222222211
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCC--CCccE-EEec
Q 023515 224 PNVTFGWVNVKDVANAHIQAFEVPS--ANGRY-CLVE 257 (281)
Q Consensus 224 ~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~-~~~~ 257 (281)
...+.+++|+|+++++++.... ..|.+ ++.+
T Consensus 215 ---~~~~~~p~dva~~~~~l~s~~~~~~tG~~~~vdg 248 (275)
T 2pd4_A 215 ---LRKNVSLEEVGNAGMYLLSSLSSGVSGEVHFVDA 248 (275)
T ss_dssp ---TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred ---cCCCCCHHHHHHHHHHHhCccccCCCCCEEEECC
Confidence 1236799999999999997533 25644 4443
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-28 Score=197.13 Aligned_cols=204 Identities=17% Similarity=0.092 Sum_probs=153.9
Q ss_pred hccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---C
Q 023515 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---G 81 (281)
Q Consensus 5 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---~ 81 (281)
+.+++|+++||||+|+||++++++|+++|++|++++|+.+ +|++|+++++++++ +
T Consensus 2 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~----------------------~D~~~~~~v~~~~~~~g~ 59 (223)
T 3uce_A 2 MGSDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG----------------------LDISDEKSVYHYFETIGA 59 (223)
T ss_dssp ---CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT----------------------CCTTCHHHHHHHHHHHCS
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc----------------------cCCCCHHHHHHHHHHhCC
Confidence 3467899999999999999999999999999999988642 79999998888876 7
Q ss_pred CcEeEEecccCC------CCCCCccchhhhhHHHHHHHHHHHhhhCCC-ccEEEEeccceeeecCCCCCCCCeeeecCCC
Q 023515 82 CDGVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAVLNTGKPRTPDVVVDETWF 154 (281)
Q Consensus 82 ~d~Vih~a~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~ 154 (281)
+|++|||||... +...+.++..+++|+.++.++++++.+.+. .+++|++||..++.+.+
T Consensus 60 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~-------------- 125 (223)
T 3uce_A 60 FDHLIVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSRKVVA-------------- 125 (223)
T ss_dssp EEEEEECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGTSCCT--------------
T ss_pred CCEEEECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhccCCC--------------
Confidence 899999999642 122344678899999999999999998632 35899999987654211
Q ss_pred CChhhhccCCchhhhhHHHHHHHHHHHHHhcC-CcEEEEcCCcccCCCCCCCCCccHH-HHHHHHhCCCCCCCCCcccee
Q 023515 155 SDPEVCKQSELWYPLSKTLAEDAAWKFAKEKS-IDLVTINPAMVIGPLLQPTLNTSAA-AVLSLIKGAQTYPNVTFGWVN 232 (281)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g-~~~~~irp~~v~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~ 232 (281)
....|+.+|.+.+.+++.++.+++ +++++++||.+.+|........... ......... ....+.+
T Consensus 126 --------~~~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 192 (223)
T 3uce_A 126 --------NTYVKAAINAAIEATTKVLAKELAPIRVNAISPGLTKTEAYKGMNADDRDAMYQRTQSHL-----PVGKVGE 192 (223)
T ss_dssp --------TCHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEECSBCSGGGTTSCHHHHHHHHHHHHHHS-----TTCSCBC
T ss_pred --------CchHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcchhhhhcchhhHHHHHHHHhhcC-----CCCCccC
Confidence 124599999999999999998865 9999999999999864432211111 122222222 2345789
Q ss_pred HHHHHHHHHHhhcCCCCCcc-EEEec
Q 023515 233 VKDVANAHIQAFEVPSANGR-YCLVE 257 (281)
Q Consensus 233 ~~D~a~~i~~~~~~~~~~g~-~~~~~ 257 (281)
++|+|+++++++......|. +++.|
T Consensus 193 ~~dvA~~~~~l~~~~~~tG~~i~vdg 218 (223)
T 3uce_A 193 ASDIAMAYLFAIQNSYMTGTVIDVDG 218 (223)
T ss_dssp HHHHHHHHHHHHHCTTCCSCEEEEST
T ss_pred HHHHHHHHHHHccCCCCCCcEEEecC
Confidence 99999999999987665674 44443
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-28 Score=201.38 Aligned_cols=217 Identities=22% Similarity=0.184 Sum_probs=158.5
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++|++|||||+|+||++++++|+++|++|++++|+.++. .... ..++.++++|++|.++++++++
T Consensus 6 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~--~~~~------~~~~~~~~~D~~~~~~v~~~~~~~~~~ 77 (257)
T 3tl3_A 6 EIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGEDV--VADL------GDRARFAAADVTDEAAVASALDLAETM 77 (257)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCHHH--HHHT------CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred eecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchHHH--HHhc------CCceEEEECCCCCHHHHHHHHHHHHHh
Confidence 36789999999999999999999999999999999954321 1111 2468999999999999888876
Q ss_pred -CCcEeEEecccCC---------CCCCCccchhhhhHHHHHHHHHHHhhhCC-----------CccEEEEeccceeeecC
Q 023515 81 -GCDGVCHTASPFY---------HDAKDPQVELLDPAVKGTLNVLNSCAKFP-----------SIKRVVLTSSMAAVLNT 139 (281)
Q Consensus 81 -~~d~Vih~a~~~~---------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-----------~~~~~v~~SS~~~~~~~ 139 (281)
++|++|||||... ....+.|+..+++|+.++.++++++.+.+ +..+||++||..++.+.
T Consensus 78 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~ 157 (257)
T 3tl3_A 78 GTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFDGQ 157 (257)
T ss_dssp SCEEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--CCH
T ss_pred CCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhcCCC
Confidence 8999999999632 13445678999999999999999998742 23589999998776421
Q ss_pred CCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHH
Q 023515 140 GKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSL 216 (281)
Q Consensus 140 ~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~ 216 (281)
+ ....|+.||.+.+.+++.++.++ |+++++++||.|.++..... ........
T Consensus 158 ~----------------------~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~---~~~~~~~~ 212 (257)
T 3tl3_A 158 I----------------------GQAAYSASKGGVVGMTLPIARDLASHRIRVMTIAPGLFDTPLLASL---PEEARASL 212 (257)
T ss_dssp H----------------------HHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTC------CHHHHHHH
T ss_pred C----------------------CCccHHHHHHHHHHHHHHHHHHhcccCcEEEEEEecCccChhhhhc---cHHHHHHH
Confidence 1 12359999999999999998764 89999999999998864332 11222222
Q ss_pred HhCCCCCCCCCccceeHHHHHHHHHHhhcCCCCCccEEEecCC
Q 023515 217 IKGAQTYPNVTFGWVNVKDVANAHIQAFEVPSANGRYCLVERV 259 (281)
Q Consensus 217 ~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~~~g~~~~~~~~ 259 (281)
....+. ...+.+++|+|++++++++.....|..+..++.
T Consensus 213 ~~~~~~----~~r~~~p~dva~~v~~l~s~~~itG~~i~vdGG 251 (257)
T 3tl3_A 213 GKQVPH----PSRLGNPDEYGALAVHIIENPMLNGEVIRLDGA 251 (257)
T ss_dssp HHTSSS----SCSCBCHHHHHHHHHHHHHCTTCCSCEEEESTT
T ss_pred HhcCCC----CCCccCHHHHHHHHHHHhcCCCCCCCEEEECCC
Confidence 222211 134789999999999999886667755444433
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=5.8e-28 Score=197.91 Aligned_cols=200 Identities=15% Similarity=0.111 Sum_probs=154.4
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCC-------EEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGY-------TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD- 80 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~- 80 (281)
+|+|+||||+|+||++++++|+++|+ +|++++|+.++.+.+...... ...++.++++|++|++++.++++
T Consensus 2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~v~~~~~~ 79 (244)
T 2bd0_A 2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRA--EGALTDTITADISDMADVRRLTTH 79 (244)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHT--TTCEEEEEECCTTSHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHc--cCCeeeEEEecCCCHHHHHHHHHH
Confidence 67899999999999999999999999 999999976544333322211 12478999999999988888776
Q ss_pred ------CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCC
Q 023515 81 ------GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPD 146 (281)
Q Consensus 81 ------~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~ 146 (281)
++|+||||||.... ...+.++..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 80 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~------ 153 (244)
T 2bd0_A 80 IVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKAFR------ 153 (244)
T ss_dssp HHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT------
T ss_pred HHHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEEecchhcCCCC------
Confidence 69999999996432 2334567889999999999999997632 457999999987754211
Q ss_pred eeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCC
Q 023515 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY 223 (281)
Q Consensus 147 ~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~ 223 (281)
....|+.+|.+.+.+++.++.+ .|++++++|||.++||........
T Consensus 154 ----------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~--------------- 202 (244)
T 2bd0_A 154 ----------------HSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKVDDE--------------- 202 (244)
T ss_dssp ----------------TCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCCCST---------------
T ss_pred ----------------CCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEECCCccchhhhhcccc---------------
Confidence 1245999999999999888764 489999999999999864321100
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCCC
Q 023515 224 PNVTFGWVNVKDVANAHIQAFEVPSA 249 (281)
Q Consensus 224 ~~~~~~~i~~~D~a~~i~~~~~~~~~ 249 (281)
....+++++|+|+++++++..+..
T Consensus 203 --~~~~~~~~~dva~~~~~l~~~~~~ 226 (244)
T 2bd0_A 203 --MQALMMMPEDIAAPVVQAYLQPSR 226 (244)
T ss_dssp --TGGGSBCHHHHHHHHHHHHTSCTT
T ss_pred --ccccCCCHHHHHHHHHHHHhCCcc
Confidence 012588999999999999986653
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-28 Score=199.22 Aligned_cols=219 Identities=12% Similarity=0.114 Sum_probs=152.9
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCC-CCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDP-NDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
+++|+++||||+|+||++++++|+++|++|++++|++ ++... ..... ..++.++++|++|+++++++++
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~---~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (249)
T 2ew8_A 5 LKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEA---AIRNL--GRRVLTVKCDVSQPGDVEAFGKQVIST 79 (249)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHH---HHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHH---HHHhc--CCcEEEEEeecCCHHHHHHHHHHHHHH
Confidence 5689999999999999999999999999999999986 32221 11111 2468899999999988887764
Q ss_pred --CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 --~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|+||||||.... ...+.|+..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 149 (249)
T 2ew8_A 80 FGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKIE---------- 149 (249)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCCS----------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhccCCC----------
Confidence 78999999996332 2334567899999999999999976532 457999999987764211
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
....|+.+|.+.+.+++.++.++ |+++++++||.+.++........ . ....... .. ...
T Consensus 150 ------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~--~-~~~~~~~--~~-~~~ 211 (249)
T 2ew8_A 150 ------------AYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEASALS--A-MFDVLPN--ML-QAI 211 (249)
T ss_dssp ------------SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC---------------------C--TT-SSS
T ss_pred ------------CchhHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcCcCccchhcccc--c-hhhHHHH--hh-Ccc
Confidence 12459999999999999998764 89999999999998763311000 0 0000010 00 112
Q ss_pred ccceeHHHHHHHHHHhhcCCC--CCcc-EEEecC
Q 023515 228 FGWVNVKDVANAHIQAFEVPS--ANGR-YCLVER 258 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~--~~g~-~~~~~~ 258 (281)
..+.+++|+|+++++++.... ..|. +++.|+
T Consensus 212 ~~~~~p~dva~~~~~l~s~~~~~~tG~~~~vdGG 245 (249)
T 2ew8_A 212 PRLQVPLDLTGAAAFLASDDASFITGQTLAVDGG 245 (249)
T ss_dssp CSCCCTHHHHHHHHHHTSGGGTTCCSCEEEESSS
T ss_pred CCCCCHHHHHHHHHHHcCcccCCCCCcEEEECCC
Confidence 347899999999999997542 3464 444443
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=197.15 Aligned_cols=208 Identities=16% Similarity=0.188 Sum_probs=152.4
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++|+|+||||+|+||++++++|+++|++|++++|+.++. ..+.++++|++|+++++++++
T Consensus 18 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~-------------~~~~~~~~Dl~d~~~v~~~~~~~~~~ 84 (253)
T 2nm0_A 18 SHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPP-------------EGFLAVKCDITDTEQVEQAYKEIEET 84 (253)
T ss_dssp --CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCC-------------TTSEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhh-------------ccceEEEecCCCHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999976532 136789999999998888775
Q ss_pred --CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 --GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 --~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|+||||||... ....+.|+..+++|+.++.++++++.+.+ +.++||++||..++.+.
T Consensus 85 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~----------- 153 (253)
T 2nm0_A 85 HGPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKGRVVLISSVVGLLGS----------- 153 (253)
T ss_dssp TCSCSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCCCCCH-----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECchhhCCCC-----------
Confidence 4799999999632 22456678999999999999999887642 45799999998765411
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
+ ....|+.+|.+.+.+++.++.++ |+++++++||.+.++....... ..........+ .
T Consensus 154 ------~-----~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~---~~~~~~~~~~p-----~ 214 (253)
T 2nm0_A 154 ------A-----GQANYAASKAGLVGFARSLARELGSRNITFNVVAPGFVDTDMTKVLTD---EQRANIVSQVP-----L 214 (253)
T ss_dssp ------H-----HHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEECSBCC------------CHHHHHTTCT-----T
T ss_pred ------C-----CcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhcCH---HHHHHHHhcCC-----C
Confidence 0 12359999999999999988764 7999999999998875321100 01111111111 2
Q ss_pred ccceeHHHHHHHHHHhhcCCC--CCccEEEe
Q 023515 228 FGWVNVKDVANAHIQAFEVPS--ANGRYCLV 256 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~ 256 (281)
..+++++|+|+++++++.... ..|.++..
T Consensus 215 ~~~~~p~dvA~~i~~l~s~~~~~~tG~~i~v 245 (253)
T 2nm0_A 215 GRYARPEEIAATVRFLASDDASYITGAVIPV 245 (253)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEE
T ss_pred CCCcCHHHHHHHHHHHhCccccCCcCcEEEE
Confidence 347899999999999998643 25654443
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.6e-28 Score=198.75 Aligned_cols=211 Identities=17% Similarity=0.163 Sum_probs=158.3
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++|+++||||+|+||++++++|+++|++|++++|+.++.+.+.... ...+.++++|++|+++++++++
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 79 (260)
T 1nff_A 5 LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL-----ADAARYVHLDVTQPAQWKAAVDTAVTAF 79 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT-----GGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----hcCceEEEecCCCHHHHHHHHHHHHHHc
Confidence 56899999999999999999999999999999999865433322221 1248889999999999888887
Q ss_pred -CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 -~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
++|+||||||.... ...+.++..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 80 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~----------- 148 (260)
T 1nff_A 80 GGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTV----------- 148 (260)
T ss_dssp SCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT-----------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEeehhhcCCCC-----------
Confidence 79999999996332 2234567899999999988888776532 457999999987765211
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCc
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (281)
....|+.+|.+.+.+++.++.+ .|++++++|||.++++... ... . . .......
T Consensus 149 -----------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~--~~~--~--------~-~~~~~~~ 204 (260)
T 1nff_A 149 -----------ACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTD--WVP--E--------D-IFQTALG 204 (260)
T ss_dssp -----------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGT--TSC--T--------T-CSCCSSS
T ss_pred -----------CchhHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCCCCccc--cch--h--------h-HHhCccC
Confidence 1245999999999999998876 5899999999999998632 100 0 0 0011123
Q ss_pred cceeHHHHHHHHHHhhcCCCC--Cc-cEEEec
Q 023515 229 GWVNVKDVANAHIQAFEVPSA--NG-RYCLVE 257 (281)
Q Consensus 229 ~~i~~~D~a~~i~~~~~~~~~--~g-~~~~~~ 257 (281)
.+++++|+|+++++++..... .| .|++.|
T Consensus 205 ~~~~~~dvA~~v~~l~s~~~~~~~G~~~~v~g 236 (260)
T 1nff_A 205 RAAEPVEVSNLVVYLASDESSYSTGAEFVVDG 236 (260)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCCCHHHHHHHHHHHhCccccCCcCCEEEECC
Confidence 578999999999999975432 35 566654
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-28 Score=205.89 Aligned_cols=229 Identities=16% Similarity=0.152 Sum_probs=160.6
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccC-CCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDG-ASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
.+++|+++||||+|+||++++++|+++|++|++++|+.++.+.+........ ...++.++++|++|+++++++++
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (280)
T 1xkq_A 3 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK 82 (280)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHH
Confidence 4668999999999999999999999999999999998654443322221111 01268999999999998888775
Q ss_pred ---CCcEeEEecccCCC---------CCCCccchhhhhHHHHHHHHHHHhhhCCC--ccEEEEeccceeeecCCCCCCCC
Q 023515 81 ---GCDGVCHTASPFYH---------DAKDPQVELLDPAVKGTLNVLNSCAKFPS--IKRVVLTSSMAAVLNTGKPRTPD 146 (281)
Q Consensus 81 ---~~d~Vih~a~~~~~---------~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~~~v~~SS~~~~~~~~~~~~~~ 146 (281)
++|+||||||.... ...+.|+..+++|+.++.++++++.+.+. .++||++||..++.+..
T Consensus 83 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------ 156 (280)
T 1xkq_A 83 QFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGPQAQ------ 156 (280)
T ss_dssp HHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSSCC------
T ss_pred hcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCCCcEEEecCccccCCCC------
Confidence 68999999996322 12344678899999999999999987521 17999999987654210
Q ss_pred eeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCC-CccHH-HHHHHHhCC-
Q 023515 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTL-NTSAA-AVLSLIKGA- 220 (281)
Q Consensus 147 ~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~-~~~~~-~~~~~~~~~- 220 (281)
+ ....|+.+|.+.+.+++.++.+ .|+++++++||.+++|...... ..... .........
T Consensus 157 -------~--------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~ 221 (280)
T 1xkq_A 157 -------P--------DFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHK 221 (280)
T ss_dssp -------C--------SSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCT
T ss_pred -------C--------cccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeCcCcCCcccccccccccccchHHHHHHHH
Confidence 0 1245999999999999998865 4899999999999998532110 00000 011111111
Q ss_pred CCCCCCCccceeHHHHHHHHHHhhcCC---CCCc-cEEEec
Q 023515 221 QTYPNVTFGWVNVKDVANAHIQAFEVP---SANG-RYCLVE 257 (281)
Q Consensus 221 ~~~~~~~~~~i~~~D~a~~i~~~~~~~---~~~g-~~~~~~ 257 (281)
... ....+.+++|+|+++++++... ...| .+++.|
T Consensus 222 ~~~--p~~~~~~pedvA~~v~~l~s~~~~~~~tG~~i~vdg 260 (280)
T 1xkq_A 222 ECI--PIGAAGKPEHIANIILFLADRNLSFYILGQSIVADG 260 (280)
T ss_dssp TTC--TTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEEST
T ss_pred cCC--CCCCCCCHHHHHHHHHHhcCcccccCccCCeEEECC
Confidence 111 1235789999999999999754 2346 445544
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-28 Score=202.98 Aligned_cols=220 Identities=17% Similarity=0.136 Sum_probs=163.5
Q ss_pred chhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--
Q 023515 3 SVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-- 80 (281)
Q Consensus 3 ~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-- 80 (281)
+|+.+++|++|||||+|+||++++++|+++|++|++++|+.++...+.... ..++.++++|++|.++++++++
T Consensus 24 ~~~~l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~v~~~~~~~ 98 (281)
T 3ppi_A 24 TIKQFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADEL-----GNRAEFVSTNVTSEDSVLAAIEAA 98 (281)
T ss_dssp CCGGGTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CTTEEEEECCTTCHHHHHHHHHHH
T ss_pred hhhccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh-----CCceEEEEcCCCCHHHHHHHHHHH
Confidence 345577899999999999999999999999999999999875544433322 2468999999999998888775
Q ss_pred ----CCcEeEEec-ccCC----------CCCCCccchhhhhHHHHHHHHHHHhhhCC---------CccEEEEeccceee
Q 023515 81 ----GCDGVCHTA-SPFY----------HDAKDPQVELLDPAVKGTLNVLNSCAKFP---------SIKRVVLTSSMAAV 136 (281)
Q Consensus 81 ----~~d~Vih~a-~~~~----------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---------~~~~~v~~SS~~~~ 136 (281)
++|++|||| +... ....+.++..+++|+.++.++++++.+.+ +.++||++||..++
T Consensus 99 ~~~~~id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~ 178 (281)
T 3ppi_A 99 NQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGY 178 (281)
T ss_dssp TTSSEEEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGT
T ss_pred HHhCCCCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEeccccc
Confidence 689999994 4311 11223367899999999999999988531 34589999998776
Q ss_pred ecCCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHH
Q 023515 137 LNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAV 213 (281)
Q Consensus 137 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~ 213 (281)
.+.+ ....|+.||.+.+.+++.++.++ |+++++++||.|.++..... .....
T Consensus 179 ~~~~----------------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~---~~~~~ 233 (281)
T 3ppi_A 179 EGQI----------------------GQTAYAAAKAGVIGLTIAAARDLSSAGIRVNTIAPGTMKTPIMESV---GEEAL 233 (281)
T ss_dssp SCCT----------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTT---CHHHH
T ss_pred CCCC----------------------CCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCCchhhhcc---cHHHH
Confidence 5221 12459999999999999988875 89999999999988643221 12223
Q ss_pred HHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCCCCccEEEe
Q 023515 214 LSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPSANGRYCLV 256 (281)
Q Consensus 214 ~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~~~g~~~~~ 256 (281)
.......+ ....+++++|+|+++++++......|..+..
T Consensus 234 ~~~~~~~~----~~~~~~~pedvA~~v~~l~s~~~~tG~~i~v 272 (281)
T 3ppi_A 234 AKFAANIP----FPKRLGTPDEFADAAAFLLTNGYINGEVMRL 272 (281)
T ss_dssp HHHHHTCC----SSSSCBCHHHHHHHHHHHHHCSSCCSCEEEE
T ss_pred HHHHhcCC----CCCCCCCHHHHHHHHHHHHcCCCcCCcEEEE
Confidence 33333322 1145889999999999999876667754443
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.8e-28 Score=198.31 Aligned_cols=210 Identities=19% Similarity=0.213 Sum_probs=156.0
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++|+++||||+|+||++++++|+++|++|++++|+.++.+.+.+..... ..++.++++|++|+++++++++
T Consensus 5 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 82 (247)
T 2jah_A 5 LQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAA--GAKVHVLELDVADRQGVDAAVASTVEAL 82 (247)
T ss_dssp TTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 56899999999999999999999999999999999865444333222111 2468899999999988887775
Q ss_pred -CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 -~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
++|+||||||.... ...+.|+..+++|+.++.++++++.+.+ + ++||++||..++.+.+
T Consensus 83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~~----------- 150 (247)
T 2jah_A 83 GGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK-GTVVQMSSIAGRVNVR----------- 150 (247)
T ss_dssp SCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGTCCCT-----------
T ss_pred CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC-CEEEEEccHHhcCCCC-----------
Confidence 78999999996321 2234567889999999999999998752 3 7999999987654211
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCc
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (281)
....|+.+|.+.+.+++.++.++ |+++++++||.+.++....... .. ........+ ...
T Consensus 151 -----------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~--~~-~~~~~~~~~----~~~ 212 (247)
T 2jah_A 151 -----------NAAVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDTELRGHITH--TA-TKEMYEQRI----SQI 212 (247)
T ss_dssp -----------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCCC--HH-HHHHHHHHT----TTS
T ss_pred -----------CCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCCCCCcchhcccc--hh-hHHHHHhcc----ccc
Confidence 12459999999999999988764 8999999999999875322111 11 111111111 112
Q ss_pred cceeHHHHHHHHHHhhcCCC
Q 023515 229 GWVNVKDVANAHIQAFEVPS 248 (281)
Q Consensus 229 ~~i~~~D~a~~i~~~~~~~~ 248 (281)
.+++++|+|+++++++..+.
T Consensus 213 ~~~~pedvA~~v~~l~s~~~ 232 (247)
T 2jah_A 213 RKLQAQDIAEAVRYAVTAPH 232 (247)
T ss_dssp CCBCHHHHHHHHHHHHHSCT
T ss_pred CCCCHHHHHHHHHHHhCCCc
Confidence 25899999999999998654
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.9e-28 Score=200.54 Aligned_cols=228 Identities=18% Similarity=0.179 Sum_probs=163.6
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---CC
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---GC 82 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---~~ 82 (281)
.+++|++|||||+|+||++++++|+++|++|++++|+.++................+.++.+|+++.+.++++++ ++
T Consensus 7 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~i 86 (267)
T 3t4x_A 7 QLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKV 86 (267)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCC
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCC
Confidence 356899999999999999999999999999999999876544433332222223468899999999998888876 78
Q ss_pred cEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeecCCC
Q 023515 83 DGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWF 154 (281)
Q Consensus 83 d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~ 154 (281)
|++|||||.... ...+.|++.+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 87 d~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------------- 152 (267)
T 3t4x_A 87 DILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKEGRVIFIASEAAIMPSQ-------------- 152 (267)
T ss_dssp SEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTEEEEEEECCGGGTSCCT--------------
T ss_pred CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEEcchhhccCCC--------------
Confidence 999999996332 2234567889999999999988887642 567999999987764211
Q ss_pred CChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCC-------CCCCc-cHHHHHHHHhC-CCC
Q 023515 155 SDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQ-------PTLNT-SAAAVLSLIKG-AQT 222 (281)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~-------~~~~~-~~~~~~~~~~~-~~~ 222 (281)
....|+.||++.+.+++.++.++ |+++++++||.+.++... +.... ........... .+.
T Consensus 153 --------~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
T 3t4x_A 153 --------EMAHYSATKTMQLSLSRSLAELTTGTNVTVNTIMPGSTLTEGVETMLNSLYPNEQLTIEEAEKRFMKENRPT 224 (267)
T ss_dssp --------TCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECCBCCHHHHHHHHHSSTTSCCCHHHHHHHHHHHHCTT
T ss_pred --------cchHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeecCccHHHHHhhcCcccCCCHHHHHHHHhhccCCc
Confidence 12459999999999999999875 699999999999886311 00001 11111221111 110
Q ss_pred CCCCCccceeHHHHHHHHHHhhcCCC--CCc-cEEEec
Q 023515 223 YPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (281)
Q Consensus 223 ~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~ 257 (281)
.....+.+++|+|+++++++.... ..| .+++.|
T Consensus 225 --~~~~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdG 260 (267)
T 3t4x_A 225 --SIIQRLIRPEEIAHLVTFLSSPLSSAINGSALRIDG 260 (267)
T ss_dssp --CSSCSCBCTHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred --ccccCccCHHHHHHHHHHHcCccccCccCCeEEECC
Confidence 123458899999999999998543 346 455544
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=5e-28 Score=197.22 Aligned_cols=198 Identities=19% Similarity=0.118 Sum_probs=151.8
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------- 80 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------- 80 (281)
++|++|||||+|+||++++++|+++|++|++++|+.++.+.+.... ..++.++++|++|.++++++++
T Consensus 2 s~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 76 (235)
T 3l6e_A 2 SLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLL-----GNAVIGIVADLAHHEDVDVAFAAAVEWGG 76 (235)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----GGGEEEEECCTTSHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----cCCceEEECCCCCHHHHHHHHHHHHHhcC
Confidence 3789999999999999999999999999999999875544433322 1258999999999998888775
Q ss_pred CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC--CccEEEEeccceeeecCCCCCCCCeeeecCC
Q 023515 81 GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (281)
Q Consensus 81 ~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~ 153 (281)
++|++|||||... ....+.|+..+++|+.|+.++++++.+.+ ...++|++||..++.+.+
T Consensus 77 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~~~~------------- 143 (235)
T 3l6e_A 77 LPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLSSAAQVGKA------------- 143 (235)
T ss_dssp SCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECCSSCS-------------
T ss_pred CCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHHhcCCCC-------------
Confidence 6899999999632 22345577899999999999999997642 223899999987765221
Q ss_pred CCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccc
Q 023515 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGW 230 (281)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (281)
....|+.||++.+.+++.++.++ |+++++++||.+.++....... .....+
T Consensus 144 ---------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~-----------------~~~~~~ 197 (235)
T 3l6e_A 144 ---------NESLYCASKWGMRGFLESLRAELKDSPLRLVNLYPSGIRSEFWDNTDH-----------------VDPSGF 197 (235)
T ss_dssp ---------SHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEEECCCC----------------------------C
T ss_pred ---------CCcHHHHHHHHHHHHHHHHHHHhhccCCEEEEEeCCCccCcchhccCC-----------------CCCcCC
Confidence 12459999999999999998864 7999999999998875321100 011247
Q ss_pred eeHHHHHHHHHHhhcCCCC
Q 023515 231 VNVKDVANAHIQAFEVPSA 249 (281)
Q Consensus 231 i~~~D~a~~i~~~~~~~~~ 249 (281)
++++|+|+++++++.++..
T Consensus 198 ~~pedvA~~v~~l~~~~~~ 216 (235)
T 3l6e_A 198 MTPEDAAAYMLDALEARSS 216 (235)
T ss_dssp BCHHHHHHHHHHHTCCCSS
T ss_pred CCHHHHHHHHHHHHhCCCC
Confidence 8999999999999987654
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-27 Score=202.14 Aligned_cols=234 Identities=19% Similarity=0.140 Sum_probs=156.3
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC--cchhhhhhhc-cCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND--PKKTRHLLAL-DGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~--~~~~~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
|++|++|||||+|+||++++++|+++|++|++++|+... .+.++.+... .....++.++++|++|.+++.++++
T Consensus 3 m~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~ 82 (324)
T 3u9l_A 3 MSKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQII 82 (324)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHH
Confidence 457899999999999999999999999999999997432 2222222111 0112468999999999999888886
Q ss_pred ----CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCee
Q 023515 81 ----GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVV 148 (281)
Q Consensus 81 ----~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (281)
++|+||||||... ....+.++..+++|+.|+.++++++.+.+ +.+++|++||..+..+..+
T Consensus 83 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~~g~iV~isS~~~~~~~~~------- 155 (324)
T 3u9l_A 83 GEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQKHGLLIWISSSSSAGGTPP------- 155 (324)
T ss_dssp HHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCCS-------
T ss_pred HHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEecchhccCCCC-------
Confidence 8999999999632 22345567889999999999999996432 5678999999877542110
Q ss_pred eecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCC---CCccHHHHHHHHhCC-C
Q 023515 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPT---LNTSAAAVLSLIKGA-Q 221 (281)
Q Consensus 149 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~---~~~~~~~~~~~~~~~-~ 221 (281)
....|+.||.+.|.+++.++.+ +|+++++|+||.+.++..... ............... .
T Consensus 156 --------------~~~~Y~asKaa~~~~~~~la~el~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (324)
T 3u9l_A 156 --------------YLAPYFAAKAAMDAIAVQYARELSRWGIETSIIVPGAFTSGTNHFAHSGVPDDHARQAEYEAGPNA 221 (324)
T ss_dssp --------------SCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCC---------CBCCSCHHHHHHHHHTTTT
T ss_pred --------------cchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEECCccccCchhhcccCCchHHHHHHhhcccccc
Confidence 1245999999999999999887 589999999999987642111 011111111111110 0
Q ss_pred CCC--------CCCccceeHHHHHHHHHHhhcCCCCCc--cEEEecCCCC
Q 023515 222 TYP--------NVTFGWVNVKDVANAHIQAFEVPSANG--RYCLVERVSH 261 (281)
Q Consensus 222 ~~~--------~~~~~~i~~~D~a~~i~~~~~~~~~~g--~~~~~~~~~t 261 (281)
..+ ....+..+++|+|++++.+++.+.... .+.++.....
T Consensus 222 ~~~~~~~~~~~~l~~~~~~p~~vA~aiv~~~~~~~~~~~~~~~~gp~~~~ 271 (324)
T 3u9l_A 222 GLGEEIKKAFAAIVPPDADVSLVADAIVRVVGTASGKRPFRVHVDPAEDG 271 (324)
T ss_dssp THHHHHHHHHHHTSCTTCCTHHHHHHHHHHHTSCTTCCCSEEEECTTCCS
T ss_pred CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeCCcchH
Confidence 000 011223689999999999998774322 3444433444
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=9.1e-28 Score=201.28 Aligned_cols=221 Identities=16% Similarity=0.124 Sum_probs=159.1
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++|+|+||||+|+||++++++|+++|++|++++|+.++.+.+.+..... ..++.++.+|++|.++++++++
T Consensus 41 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 118 (285)
T 2c07_A 41 CGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSF--GYESSGYAGDVSKKEEISEVINKILTE 118 (285)
T ss_dssp CCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhc--CCceeEEECCCCCHHHHHHHHHHHHHh
Confidence 356789999999999999999999999999999888754443332222111 2468899999999998888774
Q ss_pred --CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 --~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|+||||||.... ...+.++..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 119 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~---------- 188 (285)
T 2c07_A 119 HKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGNV---------- 188 (285)
T ss_dssp CSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCT----------
T ss_pred cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccCCC----------
Confidence 68999999996432 2234567889999999999999887531 457999999987765321
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
....|+.+|.+.+.+++.++.++ |+++++++||.+.++..... ............+ .
T Consensus 189 ------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~---~~~~~~~~~~~~~-----~ 248 (285)
T 2c07_A 189 ------------GQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKI---SEQIKKNIISNIP-----A 248 (285)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----C---CHHHHHHHHTTCT-----T
T ss_pred ------------CCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcEecCchhhc---CHHHHHHHHhhCC-----C
Confidence 12459999999999999988764 89999999999998864321 1122222222211 2
Q ss_pred ccceeHHHHHHHHHHhhcCCC--CCc-cEEEecC
Q 023515 228 FGWVNVKDVANAHIQAFEVPS--ANG-RYCLVER 258 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~~ 258 (281)
..+++++|+|+++++++.... ..| .+++.|+
T Consensus 249 ~~~~~~~dvA~~~~~l~~~~~~~~~G~~i~v~gG 282 (285)
T 2c07_A 249 GRMGTPEEVANLACFLSSDKSGYINGRVFVIDGG 282 (285)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCCCHHHHHHHHHHHhCCCcCCCCCCEEEeCCC
Confidence 348899999999999997643 245 4555443
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-27 Score=196.23 Aligned_cols=223 Identities=11% Similarity=0.061 Sum_probs=164.9
Q ss_pred ccCCCeEEEeCCchH--HHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 6 AAAGKVVCVTGASGY--IASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~--iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
.+++|+++||||+|+ ||++++++|+++|++|++++|+....+.+.++..... ..++.++++|++|+++++++++
T Consensus 4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~ 82 (266)
T 3oig_A 4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLD-RNDSIILPCDVTNDAEIETCFASIK 82 (266)
T ss_dssp CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSS-SCCCEEEECCCSSSHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcC-CCCceEEeCCCCCHHHHHHHHHHHH
Confidence 467899999999977 9999999999999999999998644444443332221 2368999999999998888775
Q ss_pred ----CCcEeEEecccCC---------CCCCCccchhhhhHHHHHHHHHHHhhhCCC-ccEEEEeccceeeecCCCCCCCC
Q 023515 81 ----GCDGVCHTASPFY---------HDAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAVLNTGKPRTPD 146 (281)
Q Consensus 81 ----~~d~Vih~a~~~~---------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~ 146 (281)
++|++|||||... ....+.++..+++|+.++.++++++.+.+. .++||++||..++.+.+
T Consensus 83 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~------ 156 (266)
T 3oig_A 83 EQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGELVMP------ 156 (266)
T ss_dssp HHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTSCCT------
T ss_pred HHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecccccccCC------
Confidence 6899999998643 122344668899999999999999998743 36899999987765211
Q ss_pred eeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCC
Q 023515 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY 223 (281)
Q Consensus 147 ~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~ 223 (281)
....|+.||++.+.+++.++.++ |+++++++||.|.++...... .............
T Consensus 157 ----------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~-~~~~~~~~~~~~~--- 216 (266)
T 3oig_A 157 ----------------NYNVMGVAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSAKGIS-DFNSILKDIEERA--- 216 (266)
T ss_dssp ----------------TTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCT-THHHHHHHHHHHS---
T ss_pred ----------------CcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCccccccccccc-chHHHHHHHHhcC---
Confidence 12459999999999999998864 899999999999987643321 1222233332222
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCC--CCc-cEEEec
Q 023515 224 PNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (281)
Q Consensus 224 ~~~~~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~ 257 (281)
....+.+++|+|+++++++.... ..| .+++.|
T Consensus 217 --~~~~~~~p~dva~~v~~l~s~~~~~~tG~~i~vdG 251 (266)
T 3oig_A 217 --PLRRTTTPEEVGDTAAFLFSDMSRGITGENLHVDS 251 (266)
T ss_dssp --TTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred --CCCCCCCHHHHHHHHHHHcCCchhcCcCCEEEECC
Confidence 12347899999999999998643 356 445544
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-28 Score=202.80 Aligned_cols=220 Identities=18% Similarity=0.140 Sum_probs=159.1
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC-cchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
.+++|+|+||||+|+||++++++|+++|++|++++|+..+ .+.+....... ..++.++++|++|.+++.++++
T Consensus 26 ~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~ 103 (271)
T 4iin_A 26 QFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEK--GYKAAVIKFDAASESDFIEAIQTIVQ 103 (271)
T ss_dssp CCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999999996533 22222222221 2478999999999988888776
Q ss_pred ---CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeee
Q 023515 81 ---GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (281)
Q Consensus 81 ---~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (281)
++|+||||||.... ...+.++..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 104 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------- 174 (271)
T 4iin_A 104 SDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRFGSVVNVASIIGERGNM--------- 174 (271)
T ss_dssp HHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCT---------
T ss_pred hcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEechhhcCCCC---------
Confidence 78999999997432 2334567899999999999999987742 457899999987765221
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCC
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (281)
....|+.+|.+.+.+++.++.+ .|+++++++||.+.++....... ........ ...
T Consensus 175 -------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~---~~~~~~~~-----~~~ 233 (271)
T 4iin_A 175 -------------GQTNYSASKGGMIAMSKSFAYEGALRNIRFNSVTPGFIETDMNANLKD---ELKADYVK-----NIP 233 (271)
T ss_dssp -------------TCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCC---------------CGG-----GCT
T ss_pred -------------CchHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcccCCchhhhcH---HHHHHHHh-----cCC
Confidence 1245999999999999999887 58999999999999876332110 00010111 112
Q ss_pred CccceeHHHHHHHHHHhhcCCC--CCcc-EEEec
Q 023515 227 TFGWVNVKDVANAHIQAFEVPS--ANGR-YCLVE 257 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~--~~g~-~~~~~ 257 (281)
...+.+++|+|+++++++.... ..|. +++.|
T Consensus 234 ~~~~~~p~dvA~~i~~l~s~~~~~itG~~i~vdG 267 (271)
T 4iin_A 234 LNRLGSAKEVAEAVAFLLSDHSSYITGETLKVNG 267 (271)
T ss_dssp TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred cCCCcCHHHHHHHHHHHhCCCcCCCcCCEEEeCC
Confidence 3457899999999999998643 3564 44443
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-27 Score=197.46 Aligned_cols=220 Identities=15% Similarity=0.170 Sum_probs=160.9
Q ss_pred hccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC-CcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN-DPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 5 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
+.+++|+|+||||+|+||++++++|+++|++|+++.++.. ............ ..++.++++|++|.+++.++++
T Consensus 22 ~~l~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~ 99 (267)
T 4iiu_A 22 SNAMSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQETLNAIVAN--GGNGRLLSFDVANREQCREVLEHEI 99 (267)
T ss_dssp ---CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHH
Confidence 3456889999999999999999999999999988765432 222222221111 2578999999999998888776
Q ss_pred ----CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhh-----hCCCccEEEEeccceeeecCCCCCCCC
Q 023515 81 ----GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCA-----KFPSIKRVVLTSSMAAVLNTGKPRTPD 146 (281)
Q Consensus 81 ----~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~-----~~~~~~~~v~~SS~~~~~~~~~~~~~~ 146 (281)
++|+||||||.... ...+.++..+++|+.++.++++++. +. +.++||++||..++.+.+
T Consensus 100 ~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~g~iv~isS~~~~~~~~------ 172 (267)
T 4iiu_A 100 AQHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGAR-QGGRIITLSSVSGVMGNR------ 172 (267)
T ss_dssp HHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-SCEEEEEECCHHHHHCCT------
T ss_pred HHhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCcEEEEEcchHhccCCC------
Confidence 78999999996432 2344567899999999999999885 33 567999999988775321
Q ss_pred eeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCC
Q 023515 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY 223 (281)
Q Consensus 147 ~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~ 223 (281)
....|+.+|.+.+.+++.++.++ |+++++++||.+.++..... ...........
T Consensus 173 ----------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~----~~~~~~~~~~~--- 229 (267)
T 4iiu_A 173 ----------------GQVNYSAAKAGIIGATKALAIELAKRKITVNCIAPGLIDTGMIEME----ESALKEAMSMI--- 229 (267)
T ss_dssp ----------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCCC----HHHHHHHHHTC---
T ss_pred ----------------CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeecCCccccc----HHHHHHHHhcC---
Confidence 12459999999999999988765 89999999999999875432 23333333332
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCC--CCc-cEEEecC
Q 023515 224 PNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVER 258 (281)
Q Consensus 224 ~~~~~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~~ 258 (281)
....+.+++|+|+++++++.... ..| .+++.|+
T Consensus 230 --p~~~~~~~edva~~~~~L~s~~~~~itG~~i~vdGG 265 (267)
T 4iiu_A 230 --PMKRMGQAEEVAGLASYLMSDIAGYVTRQVISINGG 265 (267)
T ss_dssp --TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred --CCCCCcCHHHHHHHHHHHhCCcccCccCCEEEeCCC
Confidence 12347899999999999998643 346 4455443
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=198.68 Aligned_cols=221 Identities=15% Similarity=0.126 Sum_probs=159.1
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhh-hccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLL-ALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
.+++|++|||||+|+||++++++|+++|++|++++|+.++...+.... ... ..++.++++|++|+++++++++
T Consensus 18 ~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~ 95 (267)
T 1vl8_A 18 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY--GVETMAFRCDVSNYEEVKKLLEAVKE 95 (267)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH--CCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999865433322221 111 2468889999999988888776
Q ss_pred ---CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccce-eeecCCCCCCCCee
Q 023515 81 ---GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMA-AVLNTGKPRTPDVV 148 (281)
Q Consensus 81 ---~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~-~~~~~~~~~~~~~~ 148 (281)
++|+||||||.... ...+.|+..+++|+.++.++++++.+.+ +.++||++||.. +..+.+
T Consensus 96 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~-------- 167 (267)
T 1vl8_A 96 KFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVTMP-------- 167 (267)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCCCSS--------
T ss_pred HcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCcchhccCCC--------
Confidence 78999999996432 2234567889999999999999986532 457999999986 432110
Q ss_pred eecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCC
Q 023515 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (281)
Q Consensus 149 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (281)
....|+.+|.+.+.+++.++.+ .|+++++++||.+.++...... .............+
T Consensus 168 --------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~-~~~~~~~~~~~~~p---- 228 (267)
T 1vl8_A 168 --------------NISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVF-SDPEKLDYMLKRIP---- 228 (267)
T ss_dssp --------------SCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHH-TCHHHHHHHHHTCT----
T ss_pred --------------CChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCccccccccc-cChHHHHHHHhhCC----
Confidence 1245999999999999999876 4899999999999887532100 00111222222211
Q ss_pred CCccceeHHHHHHHHHHhhcCCC--CCccEEEe
Q 023515 226 VTFGWVNVKDVANAHIQAFEVPS--ANGRYCLV 256 (281)
Q Consensus 226 ~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~ 256 (281)
...+++++|+|+++++++.... ..|..+..
T Consensus 229 -~~~~~~p~dvA~~v~~l~s~~~~~itG~~i~v 260 (267)
T 1vl8_A 229 -LGRTGVPEDLKGVAVFLASEEAKYVTGQIIFV 260 (267)
T ss_dssp -TSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEE
T ss_pred -CCCCcCHHHHHHHHHHHcCccccCCcCCeEEE
Confidence 2347899999999999997643 35654443
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=99.95 E-value=5.9e-28 Score=197.85 Aligned_cols=218 Identities=16% Similarity=0.152 Sum_probs=158.5
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEE-EcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKAS-VRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------- 80 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------- 80 (281)
+|+|+||||+|+||++++++|+++|++|+++ +|+.++.+.+.+..... ..++.++++|++|+++++++++
T Consensus 1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 78 (244)
T 1edo_A 1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAY--GGQAITFGGDVSKEADVEAMMKTAIDAWG 78 (244)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH--TCEEEEEECCTTSHHHHHHHHHHHHHHSS
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCcEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 4789999999999999999999999999995 66654433332222111 2468899999999998888876
Q ss_pred CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeecC
Q 023515 81 GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (281)
Q Consensus 81 ~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~ 152 (281)
++|+||||||.... ...+.++..+++|+.++.++++++.+.+ +.++||++||..++++.+
T Consensus 79 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~------------ 146 (244)
T 1edo_A 79 TIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNI------------ 146 (244)
T ss_dssp CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCT------------
T ss_pred CCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECChhhcCCCC------------
Confidence 68999999996432 2234566889999999999999998742 457999999987765221
Q ss_pred CCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCcc
Q 023515 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG 229 (281)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (281)
....|+.+|.+.+.+++.++.+ .|++++++|||.++++..... ............+ ...
T Consensus 147 ----------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~---~~~~~~~~~~~~~-----~~~ 208 (244)
T 1edo_A 147 ----------GQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKL---GEDMEKKILGTIP-----LGR 208 (244)
T ss_dssp ----------TCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTT---CHHHHHHHHTSCT-----TCS
T ss_pred ----------CCccchhhHHHHHHHHHHHHHHhhhcCCEEEEEeeCccccchhhhc---ChHHHHHHhhcCC-----CCC
Confidence 1245999999999999998876 489999999999998753221 1122222222211 234
Q ss_pred ceeHHHHHHHHHHhhcCCC---CCc-cEEEecC
Q 023515 230 WVNVKDVANAHIQAFEVPS---ANG-RYCLVER 258 (281)
Q Consensus 230 ~i~~~D~a~~i~~~~~~~~---~~g-~~~~~~~ 258 (281)
+++++|+|+++++++..+. ..| .|++.++
T Consensus 209 ~~~~~dva~~~~~l~~~~~~~~~~G~~~~v~gG 241 (244)
T 1edo_A 209 TGQPENVAGLVEFLALSPAASYITGQAFTIDGG 241 (244)
T ss_dssp CBCHHHHHHHHHHHHHCSGGGGCCSCEEEESTT
T ss_pred CCCHHHHHHHHHHHhCCCccCCcCCCEEEeCCC
Confidence 8899999999999984432 235 5555543
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=200.78 Aligned_cols=227 Identities=17% Similarity=0.125 Sum_probs=161.4
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC---------cchhhhhhh-ccCCCCcEEEEEcCCCCcCcH
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND---------PKKTRHLLA-LDGASERLQLFKANLLEEGSF 75 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~---------~~~~~~~~~-~~~~~~~~~~~~~D~~~~~~~ 75 (281)
.+++|++|||||+|+||++++++|+++|++|++++|++.. .+.+..... ......++.++++|++|.+++
T Consensus 25 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v 104 (299)
T 3t7c_A 25 KVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAM 104 (299)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred ccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHH
Confidence 3568999999999999999999999999999999997431 122221111 111135789999999999988
Q ss_pred HHHhc-------CCcEeEEecccCCC------CCCCccchhhhhHHHHHHHHHHHhhhCC----CccEEEEeccceeeec
Q 023515 76 DSIVD-------GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFP----SIKRVVLTSSMAAVLN 138 (281)
Q Consensus 76 ~~~~~-------~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~~~v~~SS~~~~~~ 138 (281)
+++++ ++|++|||||.... ...+.|+..+++|+.++.++++++.+.+ +.++||++||..++.+
T Consensus 105 ~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~~~~~~ 184 (299)
T 3t7c_A 105 QAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGLRG 184 (299)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCGGGTSC
T ss_pred HHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccC
Confidence 88776 79999999996332 2345577899999999999999987752 3578999999877652
Q ss_pred CCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCC---------
Q 023515 139 TGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTL--------- 206 (281)
Q Consensus 139 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~--------- 206 (281)
.+ ....|+.||++.+.+++.++.++ |+++++|+||.|.+|......
T Consensus 185 ~~----------------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~ 242 (299)
T 3t7c_A 185 AE----------------------NIGNYIASKHGLHGLMRTMALELGPRNIRVNIVCPSSVATPMLLNEPTYRMFRPDL 242 (299)
T ss_dssp CT----------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHHHHHHHCTTS
T ss_pred CC----------------------CcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCccCccccccchhhhhhhhh
Confidence 21 12459999999999999998875 899999999999998643210
Q ss_pred -CccHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCcc-EEEec
Q 023515 207 -NTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGR-YCLVE 257 (281)
Q Consensus 207 -~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~-~~~~~ 257 (281)
............... .....+..++|+|+++++++.... ..|+ +++.|
T Consensus 243 ~~~~~~~~~~~~~~~~---~~p~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdG 294 (299)
T 3t7c_A 243 ENPTVEDFQVASRQMH---VLPIPYVEPADISNAILFLVSDDARYITGVSLPVDG 294 (299)
T ss_dssp SSCCHHHHHHHHHHHS---SSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred ccchhhHHHHHhhhhc---ccCcCCCCHHHHHHHHHHHhCcccccCcCCEEeeCC
Confidence 000111111000000 011457899999999999997643 3564 44443
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-27 Score=194.40 Aligned_cols=212 Identities=17% Similarity=0.115 Sum_probs=157.0
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++|+++||||+|+||++++++|+++|++|++++|+.++...+... .++.++++|++|+++++++++
T Consensus 3 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~D~~~~~~~~~~~~~~~~~~ 75 (245)
T 1uls_A 3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEA-------VGAHPVVMDVADPASVERGFAEALAHL 75 (245)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT-------TTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------cCCEEEEecCCCHHHHHHHHHHHHHHc
Confidence 5689999999999999999999999999999999976443322211 137889999999988888775
Q ss_pred -CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 -~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
++|+||||||.... ...+.|+..+++|+.++.++++++.+.+ +.++||++||.. ..+.+
T Consensus 76 g~id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~-~~~~~----------- 143 (245)
T 1uls_A 76 GRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRV-YLGNL----------- 143 (245)
T ss_dssp SSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGG-GGCCT-----------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEccch-hcCCC-----------
Confidence 58999999996332 2234567889999999999999998752 457999999987 54211
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCc
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (281)
....|+.+|.+.+.+++.++.++ |+++++++||.+.++..... ............+ ..
T Consensus 144 -----------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~---~~~~~~~~~~~~p-----~~ 204 (245)
T 1uls_A 144 -----------GQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAKV---PEKVREKAIAATP-----LG 204 (245)
T ss_dssp -----------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSSS---CHHHHHHHHHTCT-----TC
T ss_pred -----------CchhHHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCcCcchhhc---CHHHHHHHHhhCC-----CC
Confidence 12459999999999999988764 89999999999998864321 1122222222211 12
Q ss_pred cceeHHHHHHHHHHhhcCCC--CCccEEEe
Q 023515 229 GWVNVKDVANAHIQAFEVPS--ANGRYCLV 256 (281)
Q Consensus 229 ~~i~~~D~a~~i~~~~~~~~--~~g~~~~~ 256 (281)
.+++++|+|+++++++.... ..|..+..
T Consensus 205 ~~~~~~dvA~~v~~l~s~~~~~~tG~~~~v 234 (245)
T 1uls_A 205 RAGKPLEVAYAALFLLSDESSFITGQVLFV 234 (245)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEE
T ss_pred CCcCHHHHHHHHHHHhCchhcCCcCCEEEE
Confidence 37899999999999998543 34644433
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=198.55 Aligned_cols=219 Identities=20% Similarity=0.142 Sum_probs=155.2
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC-CcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN-DPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
+++|++|||||+|+||++++++|+++|++|++++++.. ..+.+....... ..++.++++|++|.++++++++
T Consensus 25 ~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 102 (267)
T 3u5t_A 25 ETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAA--GGKALTAQADVSDPAAVRRLFATAEEA 102 (267)
T ss_dssp --CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999866543 233333222222 2478999999999998888776
Q ss_pred --CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCCCCCeeeecC
Q 023515 81 --GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (281)
Q Consensus 81 --~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~ 152 (281)
++|++|||||... ....+.|+..+++|+.++.++++++.+.+ +.+++|++||..+..+.+
T Consensus 103 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------ 170 (267)
T 3u5t_A 103 FGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVGLLHP------------ 170 (267)
T ss_dssp HSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHHHHCCT------------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhhccCCC------------
Confidence 7899999999633 22334477889999999999999998863 235899999987755221
Q ss_pred CCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCcc
Q 023515 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG 229 (281)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (281)
....|+.||++.+.+++.++.++ |+++++++||.+.++....... ........... ....
T Consensus 171 ----------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~--~~~~~~~~~~~-----p~~r 233 (267)
T 3u5t_A 171 ----------SYGIYAAAKAGVEAMTHVLSKELRGRDITVNAVAPGPTATDLFLEGKS--DEVRDRFAKLA-----PLER 233 (267)
T ss_dssp ----------TCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECCBC-------------CHHHHHTSS-----TTCS
T ss_pred ----------CchHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEEECCCcCccccccCC--HHHHHHHHhcC-----CCCC
Confidence 12459999999999999999875 8999999999999876322110 01111122211 2234
Q ss_pred ceeHHHHHHHHHHhhcCCCC--CccEEEe
Q 023515 230 WVNVKDVANAHIQAFEVPSA--NGRYCLV 256 (281)
Q Consensus 230 ~i~~~D~a~~i~~~~~~~~~--~g~~~~~ 256 (281)
+.+++|+|+++++++..... .|+.+..
T Consensus 234 ~~~pedvA~~v~~L~s~~~~~itG~~i~v 262 (267)
T 3u5t_A 234 LGTPQDIAGAVAFLAGPDGAWVNGQVLRA 262 (267)
T ss_dssp CBCHHHHHHHHHHHHSTTTTTCCSEEEEE
T ss_pred CcCHHHHHHHHHHHhCccccCccCCEEEe
Confidence 78999999999999986543 5654433
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.6e-28 Score=199.71 Aligned_cols=219 Identities=16% Similarity=0.136 Sum_probs=157.9
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC--cchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND--PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+|+++||||+|+||++++++|+++|++|++++|+.++ ...+...... ...++.++++|++|+++++++++
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 79 (258)
T 3a28_C 2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEA--ADQKAVFVGLDVTDKANFDSAIDEAAEKL 79 (258)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHT--TTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999999999997654 3322222211 12468999999999998888776
Q ss_pred -CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---Cc-cEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SI-KRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 -~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~-~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|+||||||.... ...+.|+..+++|+.++.++++++.+.+ +. ++||++||..++.+.+
T Consensus 80 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 149 (258)
T 3a28_C 80 GGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQGFP---------- 149 (258)
T ss_dssp TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGTSCCT----------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcchhccCCC----------
Confidence 79999999996332 2334577899999999999999998752 44 7999999987654211
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCC--------CccHHHHHHHHhC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTL--------NTSAAAVLSLIKG 219 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~--------~~~~~~~~~~~~~ 219 (281)
....|+.+|.+.+.+++.++.++ |+++++++||.+.++...... .............
T Consensus 150 ------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (258)
T 3a28_C 150 ------------ILSAYSTTKFAVRGLTQAAAQELAPKGHTVNAYAPGIVGTGMWEQIDAELSKINGKPIGENFKEYSSS 217 (258)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSHHHHHHHHHHHHHHCCCTTHHHHHHHTT
T ss_pred ------------CchhHHHHHHHHHHHHHHHHHHHHhhCeEEEEEECCccCChhhhhhhhhhccccCCchHHHHHHHHhc
Confidence 12459999999999999988764 899999999999886421100 0000111111111
Q ss_pred CCCCCCCCccceeHHHHHHHHHHhhcCCC--CCccEEEe
Q 023515 220 AQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLV 256 (281)
Q Consensus 220 ~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~ 256 (281)
. ....+.+++|+|+++++++.... ..|..+..
T Consensus 218 ~-----p~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~v 251 (258)
T 3a28_C 218 I-----ALGRPSVPEDVAGLVSFLASENSNYVTGQVMLV 251 (258)
T ss_dssp C-----TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEE
T ss_pred C-----CCCCccCHHHHHHHHHHHhCcccCCCCCCEEEE
Confidence 1 12347899999999999997643 35644433
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-27 Score=196.75 Aligned_cols=222 Identities=12% Similarity=0.015 Sum_probs=163.5
Q ss_pred hhccCCCeEEEeCCchH--HHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-
Q 023515 4 VAAAAGKVVCVTGASGY--IASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD- 80 (281)
Q Consensus 4 ~~~~~~~~ilItGatG~--iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~- 80 (281)
|.++++|+|+||||+|+ ||++++++|+++|++|++++|+. ..+.++.+.... .++.++++|++|.++++++++
T Consensus 21 M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~-~~~~~~~l~~~~---~~~~~~~~Dl~~~~~v~~~~~~ 96 (280)
T 3nrc_A 21 MGFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ-FKDRVEKLCAEF---NPAAVLPCDVISDQEIKDLFVE 96 (280)
T ss_dssp -CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT-CHHHHHHHHGGG---CCSEEEECCTTCHHHHHHHHHH
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch-HHHHHHHHHHhc---CCceEEEeecCCHHHHHHHHHH
Confidence 55677899999999955 99999999999999999999987 223333332221 358899999999998888775
Q ss_pred ------CCcEeEEecccCCC----------CCCCccchhhhhHHHHHHHHHHHhhhCC--CccEEEEeccceeeecCCCC
Q 023515 81 ------GCDGVCHTASPFYH----------DAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKP 142 (281)
Q Consensus 81 ------~~d~Vih~a~~~~~----------~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~ 142 (281)
++|+||||||.... ...+.++..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 97 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~-- 174 (280)
T 3nrc_A 97 LGKVWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEKAMP-- 174 (280)
T ss_dssp HHHHCSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGTSCCT--
T ss_pred HHHHcCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeccccccCCC--
Confidence 57999999997542 3345567899999999999999998752 346999999987765211
Q ss_pred CCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhC
Q 023515 143 RTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKG 219 (281)
Q Consensus 143 ~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~ 219 (281)
....|+.+|++.+.+++.++.+ .|+++++++||.|.++...... ............
T Consensus 175 --------------------~~~~Y~asKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~-~~~~~~~~~~~~ 233 (280)
T 3nrc_A 175 --------------------SYNTMGVAKASLEATVRYTALALGEDGIKVNAVSAGPIKTLAASGIS-NFKKMLDYNAMV 233 (280)
T ss_dssp --------------------TTHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCSGGGGCT-THHHHHHHHHHH
T ss_pred --------------------CchhhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeccccchhhhcCc-chHHHHHHHHhc
Confidence 1245999999999999998876 4899999999999987643221 112222222222
Q ss_pred CCCCCCCCccceeHHHHHHHHHHhhcCCC--CCc-cEEEec
Q 023515 220 AQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (281)
Q Consensus 220 ~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~ 257 (281)
. ....+.+++|+|+++++++.... ..| .+++.|
T Consensus 234 ~-----p~~~~~~pedvA~~v~~l~s~~~~~~tG~~i~vdg 269 (280)
T 3nrc_A 234 S-----PLKKNVDIMEVGNTVAFLCSDMATGITGEVVHVDA 269 (280)
T ss_dssp S-----TTCSCCCHHHHHHHHHHTTSGGGTTCCSCEEEEST
T ss_pred C-----CCCCCCCHHHHHHHHHHHhCcccCCcCCcEEEECC
Confidence 1 12347899999999999998643 356 455544
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-28 Score=205.82 Aligned_cols=229 Identities=18% Similarity=0.202 Sum_probs=162.2
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCc--chhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP--KKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+|+|+||||||+||++++++|+++|++|++++|+.... .....+..+. ..+++++++|++|++++.++++++|+||
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~l~~~~~~~d~vi 81 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFK--QLGAKLIEASLDDHQRLVDALKQVDVVI 81 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHH--TTTCEEECCCSSCHHHHHHHHTTCSEEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHH--hCCeEEEeCCCCCHHHHHHHHhCCCEEE
Confidence 56899999999999999999999999999999986532 1211111111 1468999999999999999999999999
Q ss_pred EecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCC-ccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCc
Q 023515 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL 165 (281)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 165 (281)
|+|+.... ..|+.++.+++++|++. + +++||+ |+ +. ..... . +.+..| ...
T Consensus 82 ~~a~~~~~----------~~~~~~~~~l~~aa~~~-g~v~~~v~-S~---~g-~~~~~----~---~~~~~p-----~~~ 133 (313)
T 1qyd_A 82 SALAGGVL----------SHHILEQLKLVEAIKEA-GNIKRFLP-SE---FG-MDPDI----M---EHALQP-----GSI 133 (313)
T ss_dssp ECCCCSSS----------STTTTTHHHHHHHHHHS-CCCSEEEC-SC---CS-SCTTS----C---CCCCSS-----TTH
T ss_pred ECCccccc----------hhhHHHHHHHHHHHHhc-CCCceEEe-cC---Cc-CCccc----c---ccCCCC-----Ccc
Confidence 99986432 13678899999999998 6 899985 43 21 11000 0 111111 123
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC--CCC--CCCCccceeHHHHHHHHH
Q 023515 166 WYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA--QTY--PNVTFGWVNVKDVANAHI 241 (281)
Q Consensus 166 ~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~i~~~D~a~~i~ 241 (281)
.| .+|.++|++++ +.|++++++||+.++++......... . .....+. ..+ ++..++|++++|+|++++
T Consensus 134 ~y-~sK~~~e~~~~----~~g~~~~ilrp~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~g~~~~~~i~~~Dva~~~~ 205 (313)
T 1qyd_A 134 TF-IDKRKVRRAIE----AASIPYTYVSSNMFAGYFAGSLAQLD-G--HMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTI 205 (313)
T ss_dssp HH-HHHHHHHHHHH----HTTCCBCEEECCEEHHHHTTTSSCTT-C--CSSCCSSEECCBTTSCSEEEEECHHHHHHHHH
T ss_pred hH-HHHHHHHHHHH----hcCCCeEEEEeceecccccccccccc-c--cccCCCCeEEEeCCCCceEEEEEHHHHHHHHH
Confidence 48 99999999884 46899999999998875322110000 0 0000111 222 467789999999999999
Q ss_pred HhhcCCCC-CccEEEe--cCCCCHHHHHHHHHHhCCC
Q 023515 242 QAFEVPSA-NGRYCLV--ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 242 ~~~~~~~~-~g~~~~~--~~~~t~~e~~~~i~~~~~~ 275 (281)
.++.++.. ++.|++. ++.+|+.|+++.+.+.+|.
T Consensus 206 ~~l~~~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~ 242 (313)
T 1qyd_A 206 KSIDDPQTLNKTMYIRPPMNILSQKEVIQIWERLSEQ 242 (313)
T ss_dssp HHTTCGGGSSSEEECCCGGGEEEHHHHHHHHHHHHTC
T ss_pred HHHhCcccCCceEEEeCCCCccCHHHHHHHHHHhcCC
Confidence 99988754 3456664 3689999999999999875
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-27 Score=194.27 Aligned_cols=228 Identities=14% Similarity=0.070 Sum_probs=167.7
Q ss_pred hhccCCCeEEEeCCch--HHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-
Q 023515 4 VAAAAGKVVCVTGASG--YIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD- 80 (281)
Q Consensus 4 ~~~~~~~~ilItGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~- 80 (281)
|+++++|+++||||+| +||+++++.|+++|++|++.+|+.+..+.+.++..... ..++.++++|++|++++.++++
T Consensus 1 M~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~ 79 (256)
T 4fs3_A 1 MLNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLN-QPEAHLYQIDVQSDEEVINGFEQ 79 (256)
T ss_dssp CCCCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGT-CSSCEEEECCTTCHHHHHHHHHH
T ss_pred CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-CCcEEEEEccCCCHHHHHHHHHH
Confidence 4567899999999876 89999999999999999999998766555554433221 2468899999999988887765
Q ss_pred ------CCcEeEEecccCC---------CCCCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCCC
Q 023515 81 ------GCDGVCHTASPFY---------HDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRT 144 (281)
Q Consensus 81 ------~~d~Vih~a~~~~---------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~ 144 (281)
++|++|||||... +...+.|...+++|+.++..+.+.+.+.+ +..++|++||..+..+.+
T Consensus 80 ~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~~~~~---- 155 (256)
T 4fs3_A 80 IGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGEFAVQ---- 155 (256)
T ss_dssp HHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGTSCCT----
T ss_pred HHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEeccccccCcc----
Confidence 7899999998522 11223355677899999999999988763 346899999987765221
Q ss_pred CCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCC
Q 023515 145 PDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ 221 (281)
Q Consensus 145 ~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~ 221 (281)
....|+.||.+.+.+.+.++.++ |+++++|.||.+.+|...... .............|
T Consensus 156 ------------------~~~~Y~asKaal~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~-~~~~~~~~~~~~~P 216 (256)
T 4fs3_A 156 ------------------NYNVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGVG-GFNTILKEIKERAP 216 (256)
T ss_dssp ------------------TTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCT-THHHHHHHHHHHST
T ss_pred ------------------cchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCCCCChhhhhcc-CCHHHHHHHHhcCC
Confidence 12459999999999999998864 899999999999987643322 22233333333221
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCCC--CCccEEEecCCC
Q 023515 222 TYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVERVS 260 (281)
Q Consensus 222 ~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~~~~ 260 (281)
...+..++|+|.++++++.... -.|+.+..++.+
T Consensus 217 -----l~R~g~peevA~~v~fL~Sd~a~~iTG~~i~VDGG~ 252 (256)
T 4fs3_A 217 -----LKRNVDQVEVGKTAAYLLSDLSSGVTGENIHVDSGF 252 (256)
T ss_dssp -----TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred -----CCCCcCHHHHHHHHHHHhCchhcCccCCEEEECcCH
Confidence 1236789999999999997543 357655554433
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-28 Score=201.91 Aligned_cols=219 Identities=16% Similarity=0.117 Sum_probs=157.6
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------C
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------G 81 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~ 81 (281)
+|+++||||+|+||++++++|+++|++|++++|+.++.+.+....... ..++.++++|++|++++.++++ +
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 79 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQA--GGHAVAVKVDVSDRDQVFAAVEQARKTLGG 79 (256)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 678999999999999999999999999999999865443332222111 2468899999999998888876 7
Q ss_pred CcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---C-ccEEEEeccceeeecCCCCCCCCeeeecC
Q 023515 82 CDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---S-IKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (281)
Q Consensus 82 ~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~-~~~~v~~SS~~~~~~~~~~~~~~~~~~e~ 152 (281)
+|+||||||.... ...+.|+..+++|+.++.++++++.+.+ + .++||++||..++.+.+
T Consensus 80 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------ 147 (256)
T 1geg_A 80 FDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGNP------------ 147 (256)
T ss_dssp CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCT------------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC------------
Confidence 9999999986321 2334567899999999999999988752 2 47999999987665211
Q ss_pred CCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCC--------ccHHHHHHHHhCCC
Q 023515 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLN--------TSAAAVLSLIKGAQ 221 (281)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~--------~~~~~~~~~~~~~~ 221 (281)
....|+.+|.+.+.+++.++.+ .|+++++++||.+.++....... .............
T Consensus 148 ----------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 216 (256)
T 1geg_A 148 ----------ELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRI- 216 (256)
T ss_dssp ----------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHHHHHHHHHHHTCCTTHHHHHHHTTC-
T ss_pred ----------CchhHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCCccchhhhhhhhccccccCChHHHHHHHHhcC-
Confidence 1245999999999999998876 48999999999999874211000 0000011111111
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCCC--CCccEEEe
Q 023515 222 TYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLV 256 (281)
Q Consensus 222 ~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~ 256 (281)
....+.+++|+|+++++++.... ..|..+..
T Consensus 217 ----p~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~v 249 (256)
T 1geg_A 217 ----TLGRLSEPEDVAACVSYLASPDSDYMTGQSLLI 249 (256)
T ss_dssp ----TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEE
T ss_pred ----CCCCCcCHHHHHHHHHHHhCccccCCCCCEEEe
Confidence 12347899999999999997643 35644433
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=5.7e-28 Score=200.29 Aligned_cols=221 Identities=17% Similarity=0.154 Sum_probs=157.0
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCc-chhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP-KKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+||+++||||+|+||++++++|+++|++|++++|+.... +.+.++.... ..++.++++|++|+++++++++
T Consensus 5 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 82 (264)
T 3i4f_A 5 RFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDV--EERLQFVQADVTKKEDLHKIVEEAMSH 82 (264)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTGGG--GGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999998876432 2222222111 2479999999999999888876
Q ss_pred --CCcEeEEeccc--CC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCee
Q 023515 81 --GCDGVCHTASP--FY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVV 148 (281)
Q Consensus 81 --~~d~Vih~a~~--~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (281)
++|+||||||. .. ....+.++..+++|+.++.++++++.+.+ +.+++|++||..+....+.
T Consensus 83 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~~~------- 155 (264)
T 3i4f_A 83 FGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQNFGRIINYGFQGADSAPGW------- 155 (264)
T ss_dssp HSCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTTGGGCCCC-------
T ss_pred hCCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEeechhcccCCC-------
Confidence 78999999993 11 12234567889999999999999995431 5578999999744311110
Q ss_pred eecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCC
Q 023515 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (281)
Q Consensus 149 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (281)
.....|+.+|++.+.+++.++.+ .|+++++++||.++++..... ........... .
T Consensus 156 -------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~----~~~~~~~~~~~----~ 214 (264)
T 3i4f_A 156 -------------IYRSAFAAAKVGLVSLTKTVAYEEAEYGITANMVCPGDIIGEMKEAT----IQEARQLKEHN----T 214 (264)
T ss_dssp -------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCGGGGSCC----HHHHHHC---------
T ss_pred -------------CCCchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEccCCccCccchhc----cHHHHHHHhhc----C
Confidence 01245999999999999999887 589999999999999864332 11111111111 1
Q ss_pred CCccceeHHHHHHHHHHhhcCCCC--Cc-cEEEec
Q 023515 226 VTFGWVNVKDVANAHIQAFEVPSA--NG-RYCLVE 257 (281)
Q Consensus 226 ~~~~~i~~~D~a~~i~~~~~~~~~--~g-~~~~~~ 257 (281)
....+.+++|+|+++++++..... .| .+++.|
T Consensus 215 p~~r~~~~~dva~~v~~l~s~~~~~itG~~i~vdG 249 (264)
T 3i4f_A 215 PIGRSGTGEDIARTISFLCEDDSDMITGTIIEVTG 249 (264)
T ss_dssp ---CCCCHHHHHHHHHHHHSGGGTTCCSCEEEESC
T ss_pred CCCCCcCHHHHHHHHHHHcCcccCCCCCcEEEEcC
Confidence 123478999999999999986542 46 455544
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.95 E-value=6e-28 Score=192.22 Aligned_cols=187 Identities=14% Similarity=0.074 Sum_probs=145.4
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcC---CcEeE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG---CDGVC 86 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~---~d~Vi 86 (281)
|+|+||||+|+||++++++|+ +|++|++++|+.. ++.+|++|++++++++++ +|+||
T Consensus 4 M~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~-------------------~~~~D~~~~~~~~~~~~~~~~~d~vi 63 (202)
T 3d7l_A 4 MKILLIGASGTLGSAVKERLE-KKAEVITAGRHSG-------------------DVTVDITNIDSIKKMYEQVGKVDAIV 63 (202)
T ss_dssp CEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS-------------------SEECCTTCHHHHHHHHHHHCCEEEEE
T ss_pred cEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc-------------------ceeeecCCHHHHHHHHHHhCCCCEEE
Confidence 479999999999999999999 9999999998753 357899999999888875 89999
Q ss_pred EecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCCC-ccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhh
Q 023515 87 HTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVC 160 (281)
Q Consensus 87 h~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 160 (281)
|+||.... ...+.++..+++|+.++.++++++.+.+. .++||++||..++.+.+
T Consensus 64 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~~-------------------- 123 (202)
T 3d7l_A 64 SATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGIMMEDPIV-------------------- 123 (202)
T ss_dssp ECCCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECCGGGTSCCT--------------------
T ss_pred ECCCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcchhhcCCCC--------------------
Confidence 99996322 12234557789999999999999998632 36899999976643110
Q ss_pred ccCCchhhhhHHHHHHHHHHHHHhc--CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeHHHHHH
Q 023515 161 KQSELWYPLSKTLAEDAAWKFAKEK--SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVAN 238 (281)
Q Consensus 161 ~~~~~~Y~~sK~~~e~~~~~~~~~~--g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~ 238 (281)
....|+.+|.+.|.+++.++.++ |++++++|||.++|+... .... ...+++++++|+|+
T Consensus 124 --~~~~Y~~sK~~~~~~~~~~~~e~~~gi~v~~v~pg~v~~~~~~------------~~~~-----~~~~~~~~~~dva~ 184 (202)
T 3d7l_A 124 --QGASAAMANGAVTAFAKSAAIEMPRGIRINTVSPNVLEESWDK------------LEPF-----FEGFLPVPAAKVAR 184 (202)
T ss_dssp --TCHHHHHHHHHHHHHHHHHTTSCSTTCEEEEEEECCBGGGHHH------------HGGG-----STTCCCBCHHHHHH
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHccCCeEEEEEecCccCCchhh------------hhhh-----ccccCCCCHHHHHH
Confidence 12459999999999999998764 899999999999987410 1111 13467899999999
Q ss_pred HHHHhhcCCCCCccEEE
Q 023515 239 AHIQAFEVPSANGRYCL 255 (281)
Q Consensus 239 ~i~~~~~~~~~~g~~~~ 255 (281)
+++.++.+...+..|++
T Consensus 185 ~~~~~~~~~~~G~~~~v 201 (202)
T 3d7l_A 185 AFEKSVFGAQTGESYQV 201 (202)
T ss_dssp HHHHHHHSCCCSCEEEE
T ss_pred HHHHhhhccccCceEec
Confidence 99998854433336664
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-28 Score=204.87 Aligned_cols=222 Identities=14% Similarity=0.072 Sum_probs=160.6
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC--CcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN--DPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
.+++|++|||||+|+||++++++|+++|++|++++|+.. ..+.+..+.... ..++.++++|++|.++++++++
T Consensus 46 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~ 123 (294)
T 3r3s_A 46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEEC--GRKAVLLPGDLSDESFARSLVHKAR 123 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHT--TCCEEECCCCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHc--CCcEEEEEecCCCHHHHHHHHHHHH
Confidence 356899999999999999999999999999999988643 222222222221 2578999999999988887765
Q ss_pred ----CCcEeEEecccCC------CCCCCccchhhhhHHHHHHHHHHHhhhCCC-ccEEEEeccceeeecCCCCCCCCeee
Q 023515 81 ----GCDGVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAVLNTGKPRTPDVVV 149 (281)
Q Consensus 81 ----~~d~Vih~a~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (281)
++|++|||||... ....+.|+..+++|+.++.++++++.+.+. .++||++||..++.+.+
T Consensus 124 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~--------- 194 (294)
T 3r3s_A 124 EALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAYQPSP--------- 194 (294)
T ss_dssp HHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGTSCCT---------
T ss_pred HHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhccCCC---------
Confidence 7899999999632 123455778999999999999999998742 35899999987765211
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCC
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (281)
....|+.+|++.+.+++.++.++ |+++++++||.|+++....... .......... ...
T Consensus 195 -------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~-~~~~~~~~~~-----~~p 255 (294)
T 3r3s_A 195 -------------HLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQ-TQDKIPQFGQ-----QTP 255 (294)
T ss_dssp -------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHTTTS-CGGGSTTTTT-----TST
T ss_pred -------------CchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCccccccccCC-CHHHHHHHHh-----cCC
Confidence 12459999999999999998875 8999999999999874211000 0000000000 112
Q ss_pred CccceeHHHHHHHHHHhhcCCC--CCc-cEEEec
Q 023515 227 TFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~ 257 (281)
...+.+++|+|+++++++.... ..| ++++.|
T Consensus 256 ~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdG 289 (294)
T 3r3s_A 256 MKRAGQPAELAPVYVYLASQESSYVTAEVHGVCG 289 (294)
T ss_dssp TSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCCCcCHHHHHHHHHHHhCccccCCCCCEEEECC
Confidence 3457899999999999997543 245 455544
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-27 Score=198.70 Aligned_cols=227 Identities=15% Similarity=0.124 Sum_probs=162.0
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchh-hhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKT-RHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
+++|+|+||||+|+||++++++|+++|++|++++|+..+.... ..+.... ..++.++++|++|.++++++++
T Consensus 12 ~~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 89 (265)
T 1h5q_A 12 FVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEF--GVKTKAYQCDVSNTDIVTKTIQQIDAD 89 (265)
T ss_dssp CTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHH--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHHHHHHhc--CCeeEEEEeeCCCHHHHHHHHHHHHHh
Confidence 5678999999999999999999999999999999976554332 1211111 2468999999999988887765
Q ss_pred --CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC----CccEEEEeccceeeecCCCCCCCCeee
Q 023515 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP----SIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (281)
Q Consensus 81 --~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (281)
++|+||||||.... ...+.++..+++|+.++.++++++.+.+ ..++||++||..++.+...
T Consensus 90 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~-------- 161 (265)
T 1h5q_A 90 LGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQS-------- 161 (265)
T ss_dssp SCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEE--------
T ss_pred cCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchhhccccc--------
Confidence 48999999996332 2234466789999999999999998742 2478999999876542110
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCC
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (281)
...+ ..+...|+.+|.+.+.+++.++.++ |++++++|||.++++..... ............ .
T Consensus 162 -~~~~------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~---~~~~~~~~~~~~-----~ 226 (265)
T 1h5q_A 162 -SLNG------SLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHM---DKKIRDHQASNI-----P 226 (265)
T ss_dssp -ETTE------ECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGS---CHHHHHHHHHTC-----T
T ss_pred -cccc------cccccccHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccccccccc---chhHHHHHHhcC-----c
Confidence 0000 0123459999999999999998764 89999999999998864321 112222222221 1
Q ss_pred CccceeHHHHHHHHHHhhcCCC--CCc-cEEEecC
Q 023515 227 TFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVER 258 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~~ 258 (281)
...+++++|+|+++++++.... ..| .|++.++
T Consensus 227 ~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 261 (265)
T 1h5q_A 227 LNRFAQPEEMTGQAILLLSDHATYMTGGEYFIDGG 261 (265)
T ss_dssp TSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEECTT
T ss_pred ccCCCCHHHHHHHHHhhccCchhcCcCcEEEecCC
Confidence 2347899999999999997643 245 5666554
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6e-28 Score=198.63 Aligned_cols=219 Identities=16% Similarity=0.148 Sum_probs=157.3
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++|+|+||||+|+||++++++|+++|++|++++|+.+..+.+...... ..++.++.+|++|++++.++++
T Consensus 4 ~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (251)
T 1zk4_A 4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT---PDQIQFFQHDSSDEDGWTKLFDATEKAF 80 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhc---cCceEEEECCCCCHHHHHHHHHHHHHHh
Confidence 5689999999999999999999999999999999976543332222111 1468999999999988888776
Q ss_pred -CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---Cc-cEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SI-KRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 -~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~-~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|+||||||.... ...+.++..+++|+.++.++++.+.+.+ +. ++||++||..++.+.+
T Consensus 81 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~---------- 150 (251)
T 1zk4_A 81 GPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGDP---------- 150 (251)
T ss_dssp SSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSCCT----------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCchhccCCC----------
Confidence 48999999986332 2233466899999999998888776531 44 7999999987764211
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHH-----hcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAK-----EKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~-----~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (281)
....|+.+|.+.+.+++.++. ..|++++++|||.++++...... . ......... ..
T Consensus 151 ------------~~~~Y~~sK~a~~~~~~~~a~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~--~-~~~~~~~~~----~~ 211 (251)
T 1zk4_A 151 ------------SLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLP--G-AEEAMSQRT----KT 211 (251)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTST--T-HHHHHTSTT----TC
T ss_pred ------------CCccchHHHHHHHHHHHHHHHHhcccCCCeEEEEEeeCcCcchhhhhcC--c-hhhhHHHhh----cC
Confidence 124599999999999998876 35899999999999987532211 0 111110111 11
Q ss_pred CCccceeHHHHHHHHHHhhcCCC--CCc-cEEEec
Q 023515 226 VTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (281)
Q Consensus 226 ~~~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~ 257 (281)
....+++++|+|+++++++.... ..| .+++.+
T Consensus 212 ~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~g 246 (251)
T 1zk4_A 212 PMGHIGEPNDIAYICVYLASNESKFATGSEFVVDG 246 (251)
T ss_dssp TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCCCCcCHHHHHHHHHHHcCcccccccCcEEEECC
Confidence 12358899999999999997643 245 455554
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=6e-28 Score=201.57 Aligned_cols=229 Identities=18% Similarity=0.133 Sum_probs=161.8
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC----------Ccchhhhhhh-ccCCCCcEEEEEcCCCCcCc
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN----------DPKKTRHLLA-LDGASERLQLFKANLLEEGS 74 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~----------~~~~~~~~~~-~~~~~~~~~~~~~D~~~~~~ 74 (281)
.+++|++|||||+|+||++++++|+++|++|++++|+.. ..+.+..... ......++.++++|++|.++
T Consensus 8 ~l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 87 (277)
T 3tsc_A 8 KLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDR 87 (277)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHH
T ss_pred ccCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHH
Confidence 467899999999999999999999999999999998532 2222222111 11113578999999999998
Q ss_pred HHHHhc-------CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC----CccEEEEeccceeeec
Q 023515 75 FDSIVD-------GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP----SIKRVVLTSSMAAVLN 138 (281)
Q Consensus 75 ~~~~~~-------~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~~~v~~SS~~~~~~ 138 (281)
++++++ ++|++|||||.... ...+.|+..+++|+.++.++++++.+.+ ..++||++||..++.+
T Consensus 88 v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~ 167 (277)
T 3tsc_A 88 LRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMKM 167 (277)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHhhCCC
Confidence 888775 68999999996432 2345577899999999999999987752 2468999999877652
Q ss_pred CCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHH
Q 023515 139 TGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLS 215 (281)
Q Consensus 139 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~ 215 (281)
.+ ....|+.||.+.+.+++.++.++ |+++++++||.|.+|..... ........
T Consensus 168 ~~----------------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~--~~~~~~~~ 223 (277)
T 3tsc_A 168 QP----------------------FMIHYTASKHAVTGLARAFAAELGKHSIRVNSVHPGPVNTPMGSGD--MVTAVGQA 223 (277)
T ss_dssp CS----------------------SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSGGGSHH--HHHHHHHH
T ss_pred CC----------------------CchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeCCCcCCcccch--hhhhhhhc
Confidence 21 12459999999999999998874 89999999999998763210 00001111
Q ss_pred HHhCC---CCC-CCCCccceeHHHHHHHHHHhhcCCC--CCcc-EEEecC
Q 023515 216 LIKGA---QTY-PNVTFGWVNVKDVANAHIQAFEVPS--ANGR-YCLVER 258 (281)
Q Consensus 216 ~~~~~---~~~-~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~-~~~~~~ 258 (281)
..... ... ......+.+++|+|+++++++.... ..|. +++.|+
T Consensus 224 ~~~~~~~~~~~~~~~p~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG 273 (277)
T 3tsc_A 224 METNPQLSHVLTPFLPDWVAEPEDIADTVCWLASDESRKVTAAQIPVDQG 273 (277)
T ss_dssp HHTCGGGTTTTCCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ccccHHHHHHhhhccCCCCCCHHHHHHHHHHHhCccccCCcCCEEeeCCC
Confidence 11111 111 1122248899999999999998654 3564 444443
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-27 Score=199.14 Aligned_cols=223 Identities=17% Similarity=0.110 Sum_probs=159.9
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC-cchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
.+++|++|||||+|+||++++++|+++|++|++++|+..+ .+.+....... ..++.++++|++|.+++.++++
T Consensus 26 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~ 103 (283)
T 1g0o_A 26 SLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKN--GSDAACVKANVGVVEDIVRMFEEAVK 103 (283)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHh--CCCeEEEEcCCCCHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999999998643 12221111111 2468899999999988877765
Q ss_pred ---CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 ---GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 ---~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
++|+||||||.... ...+.|+..+++|+.++.++++++.+.+ +.++||++||..+..+...
T Consensus 104 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~---------- 173 (283)
T 1g0o_A 104 IFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAKAVP---------- 173 (283)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCSSCS----------
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechhhccCCCC----------
Confidence 68999999996432 2345567899999999999999999864 4579999999876542110
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCC-------CC-CccHHHHHHHHh--
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQP-------TL-NTSAAAVLSLIK-- 218 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~-------~~-~~~~~~~~~~~~-- 218 (281)
....|+.||.+.+.+++.++.+ .|+++++++||.+.++.... .. ............
T Consensus 174 -----------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (283)
T 1g0o_A 174 -----------KHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQ 242 (283)
T ss_dssp -----------SCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHH
T ss_pred -----------CCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccchhhhhhhhhccccccccCHHHHHHHHhhc
Confidence 1245999999999999998876 48999999999999874210 00 001122222222
Q ss_pred CCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCccEEEe
Q 023515 219 GAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLV 256 (281)
Q Consensus 219 ~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~ 256 (281)
..+ ...+.+++|+|+++++++.... ..|..+..
T Consensus 243 ~~p-----~~r~~~p~dvA~~v~~l~s~~~~~itG~~i~v 277 (283)
T 1g0o_A 243 WSP-----LRRVGLPIDIARVVCFLASNDGGWVTGKVIGI 277 (283)
T ss_dssp SCT-----TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEE
T ss_pred CCC-----CCCCcCHHHHHHHHHHHhCccccCcCCCEEEe
Confidence 211 2347899999999999998643 35644433
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-27 Score=200.44 Aligned_cols=217 Identities=17% Similarity=0.171 Sum_probs=151.6
Q ss_pred hhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 4 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
|..+++|+||||||+|+||++++++|+++|++|++++|+..+.+.+............+.++++|++|+++++++++
T Consensus 27 m~~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 106 (279)
T 1xg5_A 27 MERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIR 106 (279)
T ss_dssp CGGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHH
Confidence 34467899999999999999999999999999999999865444433322222222468899999999998888776
Q ss_pred ----CCcEeEEecccCCC-----CCCCccchhhhhHHHHHH----HHHHHhhhCCCc--cEEEEeccceeeecCCCCCCC
Q 023515 81 ----GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTL----NVLNSCAKFPSI--KRVVLTSSMAAVLNTGKPRTP 145 (281)
Q Consensus 81 ----~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~----~l~~~~~~~~~~--~~~v~~SS~~~~~~~~~~~~~ 145 (281)
++|+||||||.... ...+.++..+++|+.++. .++..+++. +. ++||++||..++...+
T Consensus 107 ~~~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~-~~~~g~iv~isS~~~~~~~~----- 180 (279)
T 1xg5_A 107 SQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKER-NVDDGHIININSMSGHRVLP----- 180 (279)
T ss_dssp HHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCCSCEEEEECCGGGTSCCS-----
T ss_pred HhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCCceEEEEcChhhcccCC-----
Confidence 79999999996332 123446788999999954 455555554 43 7999999987642100
Q ss_pred CeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh-----cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC
Q 023515 146 DVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE-----KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA 220 (281)
Q Consensus 146 ~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~ 220 (281)
.+ ....|+.+|.+.+.+++.++.+ .++++++++||.+.++................ .
T Consensus 181 ----------~~-----~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~-~-- 242 (279)
T 1xg5_A 181 ----------LS-----VTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKDPEKAAAT-Y-- 242 (279)
T ss_dssp ----------CG-----GGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHTTTCHHHHHHH-H--
T ss_pred ----------CC-----CCchhHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEecCcccchhhhhhcccChhHHhhh-c--
Confidence 00 1245999999999999888765 47999999999998874210000011111111 0
Q ss_pred CCCCCCCccceeHHHHHHHHHHhhcCCCC
Q 023515 221 QTYPNVTFGWVNVKDVANAHIQAFEVPSA 249 (281)
Q Consensus 221 ~~~~~~~~~~i~~~D~a~~i~~~~~~~~~ 249 (281)
....+++++|+|+++++++..+..
T Consensus 243 -----~~~~~~~~~dvA~~i~~l~~~~~~ 266 (279)
T 1xg5_A 243 -----EQMKCLKPEDVAEAVIYVLSTPAH 266 (279)
T ss_dssp -----C---CBCHHHHHHHHHHHHHSCTT
T ss_pred -----ccccCCCHHHHHHHHHHHhcCCcc
Confidence 123478999999999999986543
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.4e-28 Score=198.16 Aligned_cols=211 Identities=20% Similarity=0.171 Sum_probs=155.6
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHH-CCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----C
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLS-RGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-----G 81 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-----~ 81 (281)
+||++|||||+|+||++++++|++ .|++|++++|+..... ..+.++++|++|+++++++++ +
T Consensus 3 ~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~~~------------~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 70 (244)
T 4e4y_A 3 AMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFSA------------ENLKFIKADLTKQQDITNVLDIIKNVS 70 (244)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCCCC------------TTEEEEECCTTCHHHHHHHHHHTTTCC
T ss_pred CCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEecccccccc------------ccceEEecCcCCHHHHHHHHHHHHhCC
Confidence 578999999999999999999999 7899999988765221 357899999999999888876 7
Q ss_pred CcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCCC-ccEEEEeccceeeecCCCCCCCCeeeecCCCC
Q 023515 82 CDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFS 155 (281)
Q Consensus 82 ~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~ 155 (281)
+|++|||||... ....+.|+..+++|+.++.++++++.+.+. .+++|++||..++.+.+
T Consensus 71 id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~--------------- 135 (244)
T 4e4y_A 71 FDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCFIAKP--------------- 135 (244)
T ss_dssp EEEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGTCCCT---------------
T ss_pred CCEEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHccCCC---------------
Confidence 899999999632 223445678999999999999999998732 24899999987765211
Q ss_pred ChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCc--------cHHHHHHHHhCCCCCC
Q 023515 156 DPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNT--------SAAAVLSLIKGAQTYP 224 (281)
Q Consensus 156 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~--------~~~~~~~~~~~~~~~~ 224 (281)
....|+.||++.+.+++.++.+ .|+++++++||.+.+|........ ...........
T Consensus 136 -------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 203 (244)
T 4e4y_A 136 -------NSFAYTLSKGAIAQMTKSLALDLAKYQIRVNTVCPGTVDTDLYRNLIQKYANNVGISFDEAQKQEEKE----- 203 (244)
T ss_dssp -------TBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHTT-----
T ss_pred -------CCchhHHHHHHHHHHHHHHHHHHHHcCeEEEEEecCccCchhhHHHHHhhhhhcCCCHHHHHHHHhhc-----
Confidence 1245999999999999999875 489999999999988742110000 00011111111
Q ss_pred CCCccceeHHHHHHHHHHhhcCCCC--CccEEEec
Q 023515 225 NVTFGWVNVKDVANAHIQAFEVPSA--NGRYCLVE 257 (281)
Q Consensus 225 ~~~~~~i~~~D~a~~i~~~~~~~~~--~g~~~~~~ 257 (281)
.....+.+++|+|+++++++..... .|..+..+
T Consensus 204 ~p~~r~~~p~dvA~~v~~l~s~~~~~itG~~i~vd 238 (244)
T 4e4y_A 204 FPLNRIAQPQEIAELVIFLLSDKSKFMTGGLIPID 238 (244)
T ss_dssp STTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEES
T ss_pred CCCCCCcCHHHHHHHHHHHhcCccccccCCeEeEC
Confidence 1234578999999999999986443 46444333
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-27 Score=198.18 Aligned_cols=221 Identities=17% Similarity=0.124 Sum_probs=157.5
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++|+|+||||+|+||++++++|+++|++|++++|+.++.+.+..+.... ..++.++++|++|.+++.++++
T Consensus 31 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 108 (279)
T 3ctm_A 31 SLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTY--GVHSKAYKCNISDPKSVEETISQQEKD 108 (279)
T ss_dssp CCTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHHHHH--CSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcceEEEeecCCHHHHHHHHHHHHHH
Confidence 366899999999999999999999999999999999876655443332211 2468899999999988888776
Q ss_pred --CCcEeEEecccCCC-------CCCCccchhhhhHHHHHHH----HHHHhhhCCCccEEEEeccceeeecCCCCCCCCe
Q 023515 81 --GCDGVCHTASPFYH-------DAKDPQVELLDPAVKGTLN----VLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDV 147 (281)
Q Consensus 81 --~~d~Vih~a~~~~~-------~~~~~~~~~~~~n~~~~~~----l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (281)
++|+||||||.... ...+.++..+++|+.++.+ ++..+++. +.++||++||..++.+..
T Consensus 109 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~~~iv~isS~~~~~~~~------- 180 (279)
T 3ctm_A 109 FGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKN-GKGSLIITSSISGKIVNI------- 180 (279)
T ss_dssp HSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCCTTSCC---------
T ss_pred hCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCeEEEECchHhccCCC-------
Confidence 48999999996432 1123356789999999654 44444444 568999999987654200
Q ss_pred eeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCC
Q 023515 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP 224 (281)
Q Consensus 148 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (281)
.. ....|+.+|.+.|.+++.++.++ + ++++++||.+.++..... ............
T Consensus 181 -------~~------~~~~Y~~sK~a~~~~~~~la~e~~~~~-~v~~v~Pg~v~t~~~~~~---~~~~~~~~~~~~---- 239 (279)
T 3ctm_A 181 -------PQ------LQAPYNTAKAACTHLAKSLAIEWAPFA-RVNTISPGYIDTDITDFA---SKDMKAKWWQLT---- 239 (279)
T ss_dssp --------C------CHHHHHHHHHHHHHHHHHHHHHTTTTC-EEEEEEECSBSSTTTSSC---CHHHHHHHHHHS----
T ss_pred -------CC------CcccHHHHHHHHHHHHHHHHHHhcccC-CEEEEeccCCcccccccc---ChHHHHHHHHhC----
Confidence 00 12459999999999999998874 6 999999999998864321 112222222211
Q ss_pred CCCccceeHHHHHHHHHHhhcCCC--CCc-cEEEecC
Q 023515 225 NVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVER 258 (281)
Q Consensus 225 ~~~~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~~ 258 (281)
....+++++|+|+++++++.... ..| .+++.|+
T Consensus 240 -p~~~~~~~~dvA~~~~~l~s~~~~~~tG~~i~vdgG 275 (279)
T 3ctm_A 240 -PLGREGLTQELVGGYLYLASNASTFTTGSDVVIDGG 275 (279)
T ss_dssp -TTCSCBCGGGTHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred -CccCCcCHHHHHHHHHHHhCccccCccCCEEEECCC
Confidence 12348899999999999998643 345 4555443
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-27 Score=201.24 Aligned_cols=221 Identities=16% Similarity=0.136 Sum_probs=158.6
Q ss_pred hhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEE-cCCCCcchhhhhhhccCCCCcEEEEEcCCCCcC---------
Q 023515 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASV-RDPNDPKKTRHLLALDGASERLQLFKANLLEEG--------- 73 (281)
Q Consensus 4 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--------- 73 (281)
|..+++|++|||||+|+||++++++|+++|++|++++ |+.++...+....... ...++.++++|++|.+
T Consensus 41 m~~l~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~ 119 (328)
T 2qhx_A 41 MTAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNAR-RPNSAITVQADLSNVATAPVSGADG 119 (328)
T ss_dssp ----CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH-STTCEEEEECCCSSSCBCC------
T ss_pred ccccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhh-cCCeEEEEEeeCCCchhcccccccc
Confidence 3346689999999999999999999999999999999 8764443333222101 1246899999999999
Q ss_pred --------cHHHHhc-------CCcEeEEecccCCC-----CC--------------CCccchhhhhHHHHHHHHHHHhh
Q 023515 74 --------SFDSIVD-------GCDGVCHTASPFYH-----DA--------------KDPQVELLDPAVKGTLNVLNSCA 119 (281)
Q Consensus 74 --------~~~~~~~-------~~d~Vih~a~~~~~-----~~--------------~~~~~~~~~~n~~~~~~l~~~~~ 119 (281)
+++++++ ++|+||||||.... .. .+.|+..+++|+.++.++++++.
T Consensus 120 ~~~~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~ 199 (328)
T 2qhx_A 120 SAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFA 199 (328)
T ss_dssp -CCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887776 78999999986321 11 33456789999999999999998
Q ss_pred hCC---C------ccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CC
Q 023515 120 KFP---S------IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SI 187 (281)
Q Consensus 120 ~~~---~------~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~ 187 (281)
+.+ + .++||++||..++.+.+ ....|+.+|.+.+.+++.++.++ |+
T Consensus 200 ~~m~~~~~~~~~~~g~IV~isS~~~~~~~~----------------------~~~~Y~asKaal~~l~~~la~el~~~gI 257 (328)
T 2qhx_A 200 HRVAGTPAKHRGTNYSIINMVDAMTNQPLL----------------------GYTIYTMAKGALEGLTRSAALELAPLQI 257 (328)
T ss_dssp HHHHHSCGGGSCSCEEEEEECCTTTTSCCT----------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTE
T ss_pred HHHHhcCCcCCCCCcEEEEECchhhccCCC----------------------CcHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 642 3 57899999987654211 12459999999999999998874 89
Q ss_pred cEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCccEEEe
Q 023515 188 DLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLV 256 (281)
Q Consensus 188 ~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~ 256 (281)
++++|+||.|.++. .. ............+ .+ ..+..++|+|+++++++.... ..|.++..
T Consensus 258 rvn~v~PG~v~T~~-~~----~~~~~~~~~~~~p-~~---~r~~~pedvA~~v~~l~s~~~~~itG~~i~v 319 (328)
T 2qhx_A 258 RVNGVGPGLSVLVD-DM----PPAVWEGHRSKVP-LY---QRDSSAAEVSDVVIFLCSSKAKYITGTCVKV 319 (328)
T ss_dssp EEEEEEESSBSCCC-CS----CHHHHHHHHTTCT-TT---TSCBCHHHHHHHHHHHHSGGGTTCCSCEEEE
T ss_pred EEEEEecCcccCCc-cc----cHHHHHHHHhhCC-CC---CCCCCHHHHHHHHHHHhCccccCccCcEEEE
Confidence 99999999999887 21 1222232322211 11 147899999999999997532 35644433
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.1e-27 Score=188.64 Aligned_cols=198 Identities=13% Similarity=0.108 Sum_probs=143.7
Q ss_pred CCeEEEeCCchHHHHHHHHHHH-HCCCEEEEEEcCCC-CcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 9 GKVVCVTGASGYIASWLVKLLL-SRGYTVKASVRDPN-DPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~-~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
||+|+||||||+||++++++|+ ++|++|++++|+++ +...+.. ...+++++++|++|++++.++++++|+||
T Consensus 5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~------~~~~~~~~~~D~~d~~~~~~~~~~~d~vv 78 (221)
T 3r6d_A 5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEII------DHERVTVIEGSFQNPGXLEQAVTNAEVVF 78 (221)
T ss_dssp CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHH------TSTTEEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhcc------CCCceEEEECCCCCHHHHHHHHcCCCEEE
Confidence 5679999999999999999999 89999999999865 4333210 12478999999999999999999999999
Q ss_pred EecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCc-
Q 023515 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL- 165 (281)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~- 165 (281)
|+||.. |+. +.++++++++. +.++||++||..++.+.+ ....+. ......
T Consensus 79 ~~ag~~--------------n~~-~~~~~~~~~~~-~~~~iv~iSs~~~~~~~~------~~~~~~-------~~~~~~~ 129 (221)
T 3r6d_A 79 VGAMES--------------GSD-MASIVKALSRX-NIRRVIGVSMAGLSGEFP------VALEKW-------TFDNLPI 129 (221)
T ss_dssp ESCCCC--------------HHH-HHHHHHHHHHT-TCCEEEEEEETTTTSCSC------HHHHHH-------HHHTSCH
T ss_pred EcCCCC--------------Chh-HHHHHHHHHhc-CCCeEEEEeeceecCCCC------cccccc-------ccccccc
Confidence 999742 455 89999999997 788999999987654211 000000 000112
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhh-
Q 023515 166 WYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAF- 244 (281)
Q Consensus 166 ~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~- 244 (281)
.|+.+|.+.|.+++ ..|++++++|||.++++......... ... ......+++++|+|+++++++
T Consensus 130 ~y~~~K~~~e~~~~----~~~i~~~~vrpg~v~~~~~~~~~~~~--------~~~---~~~~~~~~~~~dvA~~~~~l~~ 194 (221)
T 3r6d_A 130 SYVQGERQARNVLR----ESNLNYTILRLTWLYNDPEXTDYELI--------PEG---AQFNDAQVSREAVVKAIFDILH 194 (221)
T ss_dssp HHHHHHHHHHHHHH----HSCSEEEEEEECEEECCTTCCCCEEE--------CTT---SCCCCCEEEHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH----hCCCCEEEEechhhcCCCCCcceeec--------cCC---ccCCCceeeHHHHHHHHHHHHH
Confidence 59999999999885 46999999999999987322211100 000 011123899999999999999
Q ss_pred -cCCCC--CccEEEe
Q 023515 245 -EVPSA--NGRYCLV 256 (281)
Q Consensus 245 -~~~~~--~g~~~~~ 256 (281)
.++.. .+.+.+.
T Consensus 195 ~~~~~~~~~~~~~i~ 209 (221)
T 3r6d_A 195 AADETPFHRTSIGVG 209 (221)
T ss_dssp CSCCGGGTTEEEEEE
T ss_pred hcChhhhhcceeeec
Confidence 76653 2244444
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-27 Score=198.68 Aligned_cols=222 Identities=16% Similarity=0.141 Sum_probs=158.6
Q ss_pred chhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEE-cCCCCcchhhhhhhccCCCCcEEEEEcCCCCcC--------
Q 023515 3 SVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASV-RDPNDPKKTRHLLALDGASERLQLFKANLLEEG-------- 73 (281)
Q Consensus 3 ~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-------- 73 (281)
+|+.+++|++|||||+|+||++++++|+++|++|++++ |+.++...+....... ...++.++++|++|.+
T Consensus 3 ~m~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~Dl~~~~~~~~~~~~ 81 (291)
T 1e7w_A 3 HMTAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNAR-RPNSAITVQADLSNVATAPVSGAD 81 (291)
T ss_dssp -----CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH-STTCEEEEECCCSSSCBCCCC---
T ss_pred CccCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhh-cCCeeEEEEeecCCcccccccccc
Confidence 46667899999999999999999999999999999999 8764443332222101 1246899999999999
Q ss_pred ---------cHHHHhc-------CCcEeEEecccCCC-----CC--------------CCccchhhhhHHHHHHHHHHHh
Q 023515 74 ---------SFDSIVD-------GCDGVCHTASPFYH-----DA--------------KDPQVELLDPAVKGTLNVLNSC 118 (281)
Q Consensus 74 ---------~~~~~~~-------~~d~Vih~a~~~~~-----~~--------------~~~~~~~~~~n~~~~~~l~~~~ 118 (281)
++.++++ ++|++|||||.... .. .+.|+..+++|+.++.++++++
T Consensus 82 ~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~ 161 (291)
T 1e7w_A 82 GSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAF 161 (291)
T ss_dssp -CCCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHHHHH
Confidence 8887776 78999999986321 12 3446688999999999999999
Q ss_pred hhCC---C------ccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---C
Q 023515 119 AKFP---S------IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---S 186 (281)
Q Consensus 119 ~~~~---~------~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g 186 (281)
.+.+ + .++||++||..++.+.+ ....|+.+|.+.+.+++.++.++ |
T Consensus 162 ~~~m~~~~~~~~~~~g~Iv~isS~~~~~~~~----------------------~~~~Y~asKaa~~~l~~~la~e~~~~g 219 (291)
T 1e7w_A 162 AHRVAGTPAKHRGTNYSIINMVDAMTNQPLL----------------------GYTIYTMAKGALEGLTRSAALELAPLQ 219 (291)
T ss_dssp HHHHHTSCGGGSCSCEEEEEECCTTTTSCCT----------------------TCHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred HHHHHhcCCCCCCCCcEEEEEechhhcCCCC----------------------CCchhHHHHHHHHHHHHHHHHHHHhcC
Confidence 8642 3 47899999987654211 12459999999999999988764 8
Q ss_pred CcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCccEEEe
Q 023515 187 IDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLV 256 (281)
Q Consensus 187 ~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~ 256 (281)
+++++|+||.+.++. . .. ...........+ .+ ..+..++|+|+++++++.... ..|.++..
T Consensus 220 I~vn~v~PG~v~T~~-~--~~--~~~~~~~~~~~p-~~---~r~~~pedvA~~v~~l~s~~~~~itG~~i~v 282 (291)
T 1e7w_A 220 IRVNGVGPGLSVLVD-D--MP--PAVWEGHRSKVP-LY---QRDSSAAEVSDVVIFLCSSKAKYITGTCVKV 282 (291)
T ss_dssp EEEEEEEESSBCCGG-G--SC--HHHHHHHHTTCT-TT---TSCBCHHHHHHHHHHHHSGGGTTCCSCEEEE
T ss_pred eEEEEEeeCCccCCc-c--CC--HHHHHHHHhhCC-CC---CCCCCHHHHHHHHHHHhCCcccCccCcEEEE
Confidence 999999999998876 2 21 222222222111 11 037799999999999997533 35655444
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-28 Score=206.15 Aligned_cols=217 Identities=15% Similarity=0.080 Sum_probs=157.2
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC-CcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN-DPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 87 (281)
+++|+||||||+||++++++|+++|++|++++|+.. +...+..+. ..+++++++|++|++++.++++++|+|||
T Consensus 11 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~-----~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~ 85 (318)
T 2r6j_A 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQ-----SLGAIIVKGELDEHEKLVELMKKVDVVIS 85 (318)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHH-----HTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred CCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhh-----cCCCEEEEecCCCHHHHHHHHcCCCEEEE
Confidence 468999999999999999999999999999999875 222222111 13689999999999999999999999999
Q ss_pred ecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCC-ccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCch
Q 023515 88 TASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (281)
Q Consensus 88 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 166 (281)
+|+... +.++.+++++|++. + +++||+ |+ +. .. .+|..+..|. ...
T Consensus 86 ~a~~~~--------------~~~~~~l~~aa~~~-g~v~~~v~-S~---~g-~~--------~~~~~~~~p~-----~~~ 132 (318)
T 2r6j_A 86 ALAFPQ--------------ILDQFKILEAIKVA-GNIKRFLP-SD---FG-VE--------EDRINALPPF-----EAL 132 (318)
T ss_dssp CCCGGG--------------STTHHHHHHHHHHH-CCCCEEEC-SC---CS-SC--------TTTCCCCHHH-----HHH
T ss_pred CCchhh--------------hHHHHHHHHHHHhc-CCCCEEEe-ec---cc-cC--------cccccCCCCc-----chh
Confidence 997521 45678999999997 6 889985 43 21 11 0122222221 134
Q ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC--C--CCCCCCccceeHHHHHHHHHH
Q 023515 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA--Q--TYPNVTFGWVNVKDVANAHIQ 242 (281)
Q Consensus 167 Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~i~~~D~a~~i~~ 242 (281)
| .+|..+|.+++ +.+++++++||+.+++.. ....+.....+. . ..++..++|++++|+|++++.
T Consensus 133 y-~sK~~~e~~~~----~~~~~~~~lr~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~ 200 (318)
T 2r6j_A 133 I-ERKRMIRRAIE----EANIPYTYVSANCFASYF-------INYLLRPYDPKDEITVYGTGEAKFAMNYEQDIGLYTIK 200 (318)
T ss_dssp H-HHHHHHHHHHH----HTTCCBEEEECCEEHHHH-------HHHHHCTTCCCSEEEEETTSCCEEEEECHHHHHHHHHH
T ss_pred H-HHHHHHHHHHH----hcCCCeEEEEcceehhhh-------hhhhccccCCCCceEEecCCCceeeEeeHHHHHHHHHH
Confidence 8 99999998885 368999999998877531 011111111111 1 124677899999999999999
Q ss_pred hhcCCCCC-ccEEEe--cCCCCHHHHHHHHHHhCCC
Q 023515 243 AFEVPSAN-GRYCLV--ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 243 ~~~~~~~~-g~~~~~--~~~~t~~e~~~~i~~~~~~ 275 (281)
++.++... +.|++. ++.+|+.|+++.+.+.+|.
T Consensus 201 ~l~~~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~ 236 (318)
T 2r6j_A 201 VATDPRALNRVVIYRPSTNIITQLELISRWEKKIGK 236 (318)
T ss_dssp HTTCGGGTTEEEECCCGGGEEEHHHHHHHHHHHHTC
T ss_pred HhcCccccCeEEEecCCCCccCHHHHHHHHHHHhCC
Confidence 99876543 456654 4689999999999999875
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=198.45 Aligned_cols=220 Identities=19% Similarity=0.151 Sum_probs=158.7
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++|+++||||+|+||++++++|+++|++|++++|+.++.+.+....... ..++.++++|++|++++.++++
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (262)
T 1zem_A 4 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK--GVEARSYVCDVTSEEAVIGTVDSVVRD 81 (262)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT--TSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999999865443333222211 2468899999999988877765
Q ss_pred --CCcEeEEecccC-C-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeee
Q 023515 81 --GCDGVCHTASPF-Y-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (281)
Q Consensus 81 --~~d~Vih~a~~~-~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (281)
++|+||||||.. . ....+.|+..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------- 152 (262)
T 1zem_A 82 FGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPP--------- 152 (262)
T ss_dssp HSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSCCT---------
T ss_pred hCCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCCC---------
Confidence 789999999864 1 22334567899999999999999998752 357999999987765221
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCC------------CCccHH-HH
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPT------------LNTSAA-AV 213 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~------------~~~~~~-~~ 213 (281)
....|+.+|.+.+.+++.++.+ .|+++++|+||.+.++..... ...... ..
T Consensus 153 -------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (262)
T 1zem_A 153 -------------NMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVA 219 (262)
T ss_dssp -------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHH
T ss_pred -------------CCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEecCCcCcchhhhhccchhhhccccccccCHHHHH
Confidence 1245999999999999998875 389999999999987642110 000011 11
Q ss_pred HHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCccEE
Q 023515 214 LSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYC 254 (281)
Q Consensus 214 ~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~ 254 (281)
.......| ...+..++|+|+++++++.... ..|..+
T Consensus 220 ~~~~~~~p-----~~r~~~p~dvA~~v~~l~s~~~~~itG~~i 257 (262)
T 1zem_A 220 QQMIGSVP-----MRRYGDINEIPGVVAFLLGDDSSFMTGVNL 257 (262)
T ss_dssp HHHHHTST-----TSSCBCGGGSHHHHHHHHSGGGTTCCSCEE
T ss_pred HHHHhcCC-----CCCCcCHHHHHHHHHHHcCchhcCcCCcEE
Confidence 11222111 1236799999999999997543 246443
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.7e-27 Score=193.18 Aligned_cols=214 Identities=16% Similarity=0.143 Sum_probs=156.6
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++|+++||||+|+||++++++|+++|++|++++|+.++.+.+.... ..++.++++|++|+++++++++
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (254)
T 1hdc_A 3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL-----GDAARYQHLDVTIEEDWQRVVAYAREEF 77 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-----GGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence 56899999999999999999999999999999999864433322211 2468899999999998888876
Q ss_pred -CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 -~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
++|+||||||.... ...+.|+..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 78 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~----------- 146 (254)
T 1hdc_A 78 GSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLA----------- 146 (254)
T ss_dssp SCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT-----------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhccCCC-----------
Confidence 79999999996332 2334577899999999997777766532 457999999987764211
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC-C-CCC-C
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA-Q-TYP-N 225 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~-~-~~~-~ 225 (281)
....|+.+|.+.+.+++.++.++ |+++++++||.++++... ...... . ... .
T Consensus 147 -----------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~-----------~~~~~~~~~~~~~~ 204 (254)
T 1hdc_A 147 -----------LTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMTA-----------ETGIRQGEGNYPNT 204 (254)
T ss_dssp -----------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHH-----------HHTCCCSTTSCTTS
T ss_pred -----------CchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccCcCcccc-----------ccchhHHHHHHhcC
Confidence 12459999999999999988764 899999999999986411 000000 0 001 1
Q ss_pred CCccce-eHHHHHHHHHHhhcCCC--CCcc-EEEecC
Q 023515 226 VTFGWV-NVKDVANAHIQAFEVPS--ANGR-YCLVER 258 (281)
Q Consensus 226 ~~~~~i-~~~D~a~~i~~~~~~~~--~~g~-~~~~~~ 258 (281)
....+. +++|+|+++++++.... ..|. +++.|+
T Consensus 205 p~~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG 241 (254)
T 1hdc_A 205 PMGRVGNEPGEIAGAVVKLLSDTSSYVTGAELAVDGG 241 (254)
T ss_dssp TTSSCB-CHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCCCCCCHHHHHHHHHHHhCchhcCCCCCEEEECCC
Confidence 122467 99999999999997643 3464 444443
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-27 Score=197.24 Aligned_cols=221 Identities=14% Similarity=0.114 Sum_probs=158.3
Q ss_pred hccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC-cchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 5 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
+++++|+++||||+|+||++++++|+++|++|++++|+... ......... ....++.++++|++|.++++++++
T Consensus 21 ~~~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 98 (269)
T 3gk3_A 21 SMQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHER--DAGRDFKAYAVDVADFESCERCAEKVL 98 (269)
T ss_dssp ---CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHH--TTTCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred hhhcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHH--hcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 34668899999999999999999999999999999865432 222111111 123578999999999998888776
Q ss_pred ----CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCee
Q 023515 81 ----GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVV 148 (281)
Q Consensus 81 ----~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (281)
++|+||||||.... ...+.++..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 99 ~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------- 170 (269)
T 3gk3_A 99 ADFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFGRIVNIGSVNGSRGAF-------- 170 (269)
T ss_dssp HHHSCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCT--------
T ss_pred HHcCCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEeCChhhccCCC--------
Confidence 79999999996322 2334567899999999999999987632 457899999987765221
Q ss_pred eecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCC-C
Q 023515 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY-P 224 (281)
Q Consensus 149 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~-~ 224 (281)
....|+.+|++.+.+++.++.++ |+++++++||.+.++....... . ..... .. .
T Consensus 171 --------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~---~----~~~~~-~~~~ 228 (269)
T 3gk3_A 171 --------------GQANYASAKAGIHGFTKTLALETAKRGITVNTVSPGYLATAMVEAVPQ---D----VLEAK-ILPQ 228 (269)
T ss_dssp --------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTC--------------CC-SGGG
T ss_pred --------------CcchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCcccchhhhhhch---h----HHHHH-hhhc
Confidence 12459999999999999988764 8999999999999886432110 0 00100 00 1
Q ss_pred CCCccceeHHHHHHHHHHhhcCCC--CCc-cEEEec
Q 023515 225 NVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (281)
Q Consensus 225 ~~~~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~ 257 (281)
.....+.+++|+|+++++++.... ..| .+++.|
T Consensus 229 ~~~~~~~~p~dvA~~v~~L~s~~~~~itG~~i~vdg 264 (269)
T 3gk3_A 229 IPVGRLGRPDEVAALIAFLCSDDAGFVTGADLAING 264 (269)
T ss_dssp CTTSSCBCHHHHHHHHHHHTSTTCTTCCSCEEEEST
T ss_pred CCcCCccCHHHHHHHHHHHhCCCcCCeeCcEEEECC
Confidence 123347799999999999998654 346 455544
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-28 Score=205.76 Aligned_cols=212 Identities=12% Similarity=0.115 Sum_probs=154.6
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++|++|||||+|+||++++++|+++|++|++++|+.++.+.+........ ...+.++++|++|.++++++++
T Consensus 31 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 109 (281)
T 4dry_A 31 GEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRT-GNIVRAVVCDVGDPDQVAALFAAVRAEF 109 (281)
T ss_dssp ---CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-CCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 468999999999999999999999999999999998765444333322111 1236899999999998888775
Q ss_pred -CCcEeEEecccCCC------CCCCccchhhhhHHHHHHHHHHHhhhCC---C--ccEEEEeccceeeecCCCCCCCCee
Q 023515 81 -GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFP---S--IKRVVLTSSMAAVLNTGKPRTPDVV 148 (281)
Q Consensus 81 -~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~--~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (281)
++|+||||||.... ...+.|+..+++|+.++.++++++.+.+ + .++||++||..++.+.+
T Consensus 110 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~~-------- 181 (281)
T 4dry_A 110 ARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQTPRP-------- 181 (281)
T ss_dssp SCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGTCCCT--------
T ss_pred CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhCCCCC--------
Confidence 67999999996322 2345577899999999999999988752 1 46899999987765211
Q ss_pred eecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC-CCCC
Q 023515 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA-QTYP 224 (281)
Q Consensus 149 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~-~~~~ 224 (281)
....|+.||.+.+.+++.++.+ .|+++++|+||.|.++...... ... ....
T Consensus 182 --------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~-----------~~~~~~~~ 236 (281)
T 4dry_A 182 --------------NSAPYTATKHAITGLTKSTALDGRMHDIACGQIDIGNAATDMTARMS-----------TGVLQANG 236 (281)
T ss_dssp --------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEECBCC------------------CEEECTTS
T ss_pred --------------CChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcCcChhhhhhc-----------chhhhhhh
Confidence 1245999999999999999876 4899999999999887532110 000 0111
Q ss_pred -CCCccceeHHHHHHHHHHhhcCCCCCcc
Q 023515 225 -NVTFGWVNVKDVANAHIQAFEVPSANGR 252 (281)
Q Consensus 225 -~~~~~~i~~~D~a~~i~~~~~~~~~~g~ 252 (281)
.....++.++|+|+++++++.++...++
T Consensus 237 ~~~~~~~~~pedvA~~v~fL~s~~~~~~i 265 (281)
T 4dry_A 237 EVAAEPTIPIEHIAEAVVYMASLPLSANV 265 (281)
T ss_dssp CEEECCCBCHHHHHHHHHHHHHSCTTEEE
T ss_pred cccccCCCCHHHHHHHHHHHhCCCccCcc
Confidence 1123478999999999999998776443
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=198.12 Aligned_cols=227 Identities=17% Similarity=0.109 Sum_probs=159.9
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHH-CCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLS-RGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.++|+|+||||+|+||++++++|++ +|++|++++|+.++...+....... ..++.++.+|++|.+++.++++
T Consensus 2 ~~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 79 (276)
T 1wma_A 2 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAE--GLSPRFHQLDIDDLQSIRALRDFLRKE 79 (276)
T ss_dssp CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHT--TCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhc--CCeeEEEECCCCCHHHHHHHHHHHHHh
Confidence 3588999999999999999999999 9999999999865443332222111 2468899999999998888876
Q ss_pred --CCcEeEEecccCCCCC-----CCccchhhhhHHHHHHHHHHHhhhCCC-ccEEEEeccceeeecCCCCC------CCC
Q 023515 81 --GCDGVCHTASPFYHDA-----KDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAVLNTGKPR------TPD 146 (281)
Q Consensus 81 --~~d~Vih~a~~~~~~~-----~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~------~~~ 146 (281)
++|+||||||...... .+.++..+++|+.++.++++++.+.+. .++||++||..++++..... ...
T Consensus 80 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~~~~~~~~~ 159 (276)
T 1wma_A 80 YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRS 159 (276)
T ss_dssp HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHHC
T ss_pred cCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECChhhhcccccCChhHHhhccc
Confidence 7999999999643211 234568899999999999999998632 35899999987764211000 000
Q ss_pred eeeecCCCCC-------------hhhhccCCchhhhhHHHHHHHHHHHHHh-------cCCcEEEEcCCcccCCCCCCCC
Q 023515 147 VVVDETWFSD-------------PEVCKQSELWYPLSKTLAEDAAWKFAKE-------KSIDLVTINPAMVIGPLLQPTL 206 (281)
Q Consensus 147 ~~~~e~~~~~-------------~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-------~g~~~~~irp~~v~g~~~~~~~ 206 (281)
..++|+++.. ...+..+...|+.+|.+.+.+++.++++ .|+++++++||.+.++....
T Consensus 160 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~~~~~i~v~~v~PG~v~t~~~~~-- 237 (276)
T 1wma_A 160 ETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGP-- 237 (276)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTTCT--
T ss_pred cccchhhhhhhhhhhhhhhcccccccCCCccchhHHHHHHHHHHHHHHHHHhhcccCCCceEEEEecCCccccCcCCc--
Confidence 0111111000 0000012256999999999999988876 48999999999998875321
Q ss_pred CccHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC----CCccEEEecC
Q 023515 207 NTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS----ANGRYCLVER 258 (281)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~----~~g~~~~~~~ 258 (281)
..+.+++|+|+++++++..+. ..|.|+..+.
T Consensus 238 ---------------------~~~~~~~~~a~~~~~l~~~~~~~~~~~G~~~~~~~ 272 (276)
T 1wma_A 238 ---------------------KATKSPEEGAETPVYLALLPPDAEGPHGQFVSEKR 272 (276)
T ss_dssp ---------------------TCSBCHHHHTHHHHHHHSCCTTCCCCCSCEEETTE
T ss_pred ---------------------cccCChhHhhhhHhhhhcCcccccccCceEeccCc
Confidence 136899999999999997542 3566654333
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-26 Score=192.68 Aligned_cols=212 Identities=19% Similarity=0.143 Sum_probs=158.7
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchh-------hhhhhccCCCCcEEEEEcCCCCcCcHHHHh
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKT-------RHLLALDGASERLQLFKANLLEEGSFDSIV 79 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-------~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 79 (281)
+++|+++||||+|+||++++++|+++|++|++++|+.++.+.+ ...... ...++.++++|++|.+++++++
T Consensus 7 l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~ 84 (285)
T 3sc4_A 7 LRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEE--AGGQALPIVGDIRDGDAVAAAV 84 (285)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHH--HTSEEEEEECCTTSHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHh--cCCcEEEEECCCCCHHHHHHHH
Confidence 6789999999999999999999999999999999987653322 111111 1257899999999999888877
Q ss_pred c-------CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCC
Q 023515 80 D-------GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRT 144 (281)
Q Consensus 80 ~-------~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~ 144 (281)
+ ++|++|||||... ....+.|+..+++|+.++.++++++.+.+ +.++||++||..+..+..
T Consensus 85 ~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~---- 160 (285)
T 3sc4_A 85 AKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEPKW---- 160 (285)
T ss_dssp HHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCCCSGGG----
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhccCCC----
Confidence 6 7999999999633 22334567889999999999999999864 346899999987654210
Q ss_pred CCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCc-ccCCCCCCCCCccHHHHHHHHhCC
Q 023515 145 PDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAM-VIGPLLQPTLNTSAAAVLSLIKGA 220 (281)
Q Consensus 145 ~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~-v~g~~~~~~~~~~~~~~~~~~~~~ 220 (281)
.....|+.||++.+.+++.++.+ .|+++++|+||. +.++ .........
T Consensus 161 -----------------~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~v~PG~~v~t~-----------~~~~~~~~~ 212 (285)
T 3sc4_A 161 -----------------LRPTPYMMAKYGMTLCALGIAEELRDAGIASNTLWPRTTVATA-----------AVQNLLGGD 212 (285)
T ss_dssp -----------------SCSHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECSSCBCCH-----------HHHHHHTSC
T ss_pred -----------------CCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeCCCccccH-----------HHHhhcccc
Confidence 01245999999999999999887 489999999994 5432 122222222
Q ss_pred CCCCCCCccceeHHHHHHHHHHhhcCCC-CCccEEEe
Q 023515 221 QTYPNVTFGWVNVKDVANAHIQAFEVPS-ANGRYCLV 256 (281)
Q Consensus 221 ~~~~~~~~~~i~~~D~a~~i~~~~~~~~-~~g~~~~~ 256 (281)
. ....+..++|+|+++++++.... ..|..+..
T Consensus 213 ~----~~~r~~~pedvA~~~~~l~s~~~~~tG~~i~~ 245 (285)
T 3sc4_A 213 E----AMARSRKPEVYADAAYVVLNKPSSYTGNTLLC 245 (285)
T ss_dssp C----CCTTCBCTHHHHHHHHHHHTSCTTCCSCEEEH
T ss_pred c----cccCCCCHHHHHHHHHHHhCCcccccceEEEE
Confidence 1 12346799999999999998764 34554443
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.4e-27 Score=192.54 Aligned_cols=209 Identities=14% Similarity=0.144 Sum_probs=153.2
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++|+|+||||+|+||++++++|+++|++|++++|+.++... +..+++|++|+++++++++
T Consensus 12 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~-------------~~~~~~D~~~~~~~~~~~~~~~~~ 78 (247)
T 1uzm_A 12 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKG-------------LFGVEVDVTDSDAVDRAFTAVEEH 78 (247)
T ss_dssp CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTT-------------SEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHH-------------hcCeeccCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999999998754322 1237899999988887775
Q ss_pred --CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 --GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 --~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|+||||||... ....+.|+..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 79 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 148 (247)
T 1uzm_A 79 QGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGIG---------- 148 (247)
T ss_dssp HSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC---------------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEECCHhhccCCC----------
Confidence 6899999999633 22345577899999999999999987632 557999999987765221
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
....|+.+|.+.+.+++.++.+ .|+++++++||.+.++..... ............+ .
T Consensus 149 ------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~---~~~~~~~~~~~~p-----~ 208 (247)
T 1uzm_A 149 ------------NQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRAL---DERIQQGALQFIP-----A 208 (247)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHS---CHHHHHHHGGGCT-----T
T ss_pred ------------CChhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCCcccchhhc---CHHHHHHHHhcCC-----C
Confidence 1245999999999999998876 489999999999987642110 1111111111111 2
Q ss_pred ccceeHHHHHHHHHHhhcCCC--CCcc-EEEec
Q 023515 228 FGWVNVKDVANAHIQAFEVPS--ANGR-YCLVE 257 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~--~~g~-~~~~~ 257 (281)
..+++++|+|+++++++.... ..|. +++.|
T Consensus 209 ~~~~~~~dvA~~~~~l~s~~~~~~~G~~i~vdg 241 (247)
T 1uzm_A 209 KRVGTPAEVAGVVSFLASEDASYISGAVIPVDG 241 (247)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCCcCHHHHHHHHHHHcCccccCCcCCEEEECC
Confidence 347899999999999997543 2464 44444
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=196.72 Aligned_cols=220 Identities=14% Similarity=0.115 Sum_probs=159.7
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEc-CCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVR-DPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
..++|+||||||+|+||++++++|+++|++|+++++ +......+....... ..++.++++|++|.++++++++
T Consensus 10 ~~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~ 87 (256)
T 3ezl_A 10 VMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKAL--GFDFYASEGNVGDWDSTKQAFDKVKA 87 (256)
T ss_dssp ---CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHHT--TCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCeeEEEecCCCCHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999885 444433322222211 2468999999999988888776
Q ss_pred ---CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeee
Q 023515 81 ---GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (281)
Q Consensus 81 ---~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (281)
++|+||||||.... ...+.++..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 88 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------- 158 (256)
T 3ezl_A 88 EVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQKGQF--------- 158 (256)
T ss_dssp HTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCGGGSCS---------
T ss_pred hcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhccCCC---------
Confidence 68999999996432 2334567899999999999998886632 457899999987765221
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCC
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (281)
....|+.+|.+.+.+++.++.+ .|+++++++||.+.++..... ............ .
T Consensus 159 -------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~---~~~~~~~~~~~~-----~ 217 (256)
T 3ezl_A 159 -------------GQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKAI---RPDVLEKIVATI-----P 217 (256)
T ss_dssp -------------CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTS---CHHHHHHHHHHS-----T
T ss_pred -------------CCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEEECcccCcccccc---CHHHHHHHHhcC-----C
Confidence 1245999999999999999876 489999999999988753221 123333333322 2
Q ss_pred CccceeHHHHHHHHHHhhcCCC--CCc-cEEEec
Q 023515 227 TFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~ 257 (281)
...+.+++|+|+++++++.... ..| .+++.|
T Consensus 218 ~~~~~~~~dva~~~~~l~s~~~~~~tG~~i~vdg 251 (256)
T 3ezl_A 218 VRRLGSPDEIGSIVAWLASEESGFSTGADFSLNG 251 (256)
T ss_dssp TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCCCcCHHHHHHHHHHHhCCcccCCcCcEEEECC
Confidence 3447899999999999997543 346 455544
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-28 Score=199.99 Aligned_cols=221 Identities=17% Similarity=0.126 Sum_probs=157.0
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++|+++||||+|+||++++++|+++|++|++++|+.++...+.... ..++.++++|++|+++++++++
T Consensus 4 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 78 (253)
T 1hxh_A 4 LQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL-----GERSMFVRHDVSSEADWTLVMAAVQRRL 78 (253)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH-----CTTEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc-----CCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 56899999999999999999999999999999999764433322221 2468899999999988887775
Q ss_pred -CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 -~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
++|+||||||.... ...+.|+..+++|+.++.++++++.+.+ + ++||++||..++.+.+
T Consensus 79 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~~----------- 146 (253)
T 1hxh_A 79 GTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG-GSIINMASVSSWLPIE----------- 146 (253)
T ss_dssp CSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC-EEEEEECCGGGTSCCT-----------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC-CEEEEEcchhhcCCCC-----------
Confidence 57999999996332 2234567899999999998888776532 4 7999999987764211
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc-----CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCC
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK-----SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (281)
....|+.+|.+.+.+++.++.++ |++++++|||.++||........ ............ ...
T Consensus 147 -----------~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~--~~~~~~~~~~~~-~~p 212 (253)
T 1hxh_A 147 -----------QYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPK--GVSKEMVLHDPK-LNR 212 (253)
T ss_dssp -----------TBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSCT--TCCHHHHBCBTT-TBT
T ss_pred -----------CCccHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEEEeCCccCchhhhccch--hhhHHHHhhhhc-cCc
Confidence 12459999999999999988763 89999999999998752110000 000110111000 001
Q ss_pred CccceeHHHHHHHHHHhhcCCC--CCccE-EEecC
Q 023515 227 TFGWVNVKDVANAHIQAFEVPS--ANGRY-CLVER 258 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~--~~g~~-~~~~~ 258 (281)
...+.+++|+|+++++++.... ..|.+ ++.|+
T Consensus 213 ~~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG 247 (253)
T 1hxh_A 213 AGRAYMPERIAQLVLFLASDESSVMSGSELHADNS 247 (253)
T ss_dssp TCCEECHHHHHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred cCCCCCHHHHHHHHHHHcCccccCCCCcEEEECCC
Confidence 2347899999999999998643 34644 44443
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-27 Score=194.89 Aligned_cols=218 Identities=17% Similarity=0.107 Sum_probs=156.4
Q ss_pred hhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 4 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
|+++++|++|||||+++||+++++.|+++|++|++++|+..+.. .+..++++|++++++++++++
T Consensus 6 l~~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~------------~~~~~~~~Dv~~~~~v~~~~~~~~ 73 (261)
T 4h15_A 6 FLNLRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPEGL------------PEELFVEADLTTKEGCAIVAEATR 73 (261)
T ss_dssp CCCCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCTTS------------CTTTEEECCTTSHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchhCC------------CcEEEEEcCCCCHHHHHHHHHHHH
Confidence 44578999999999999999999999999999999999764321 123478899999988887765
Q ss_pred ----CCcEeEEecccCC-------CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCC
Q 023515 81 ----GCDGVCHTASPFY-------HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPD 146 (281)
Q Consensus 81 ----~~d~Vih~a~~~~-------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~ 146 (281)
++|++|||||... +...+.|+..+++|+.++.++.+++.+++ +..++|++||..+..+.+.
T Consensus 74 ~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Iv~isS~~~~~~~~~----- 148 (261)
T 4h15_A 74 QRLGGVDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGSGVVVHVTSIQRVLPLPE----- 148 (261)
T ss_dssp HHTSSCSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTT-----
T ss_pred HHcCCCCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCCceEEEEEehhhccCCCC-----
Confidence 6899999998522 22345678999999999999999998753 4578999999877542110
Q ss_pred eeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCC-------CCccHHHHHHH
Q 023515 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPT-------LNTSAAAVLSL 216 (281)
Q Consensus 147 ~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~-------~~~~~~~~~~~ 216 (281)
....|+.||.+.+.+.+.++.++ |+++++|.||.|.+|..... .........+.
T Consensus 149 ----------------~~~~Y~asKaal~~lt~~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~ 212 (261)
T 4h15_A 149 ----------------STTAYAAAKAALSTYSKAMSKEVSPKGVRVVRVSPGWIETEASVRLAERLAKQAGTDLEGGKKI 212 (261)
T ss_dssp ----------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred ----------------ccHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEeCCCcCCcchhhhhHHHHHhhccchhhHHHH
Confidence 12459999999999999998874 89999999999987641100 00000111111
Q ss_pred Hh-CCCCCCCCCccceeHHHHHHHHHHhhcCCCC--CccEEEe
Q 023515 217 IK-GAQTYPNVTFGWVNVKDVANAHIQAFEVPSA--NGRYCLV 256 (281)
Q Consensus 217 ~~-~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~~--~g~~~~~ 256 (281)
.. .....+ ...+..++|+|.++++++..... .|+.+..
T Consensus 213 ~~~~~~~~P--lgR~g~peevA~~v~fLaS~~a~~itG~~i~V 253 (261)
T 4h15_A 213 IMDGLGGIP--LGRPAKPEEVANLIAFLASDRAASITGAEYTI 253 (261)
T ss_dssp HHHHTTCCT--TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEE
T ss_pred HHHHhcCCC--CCCCcCHHHHHHHHHHHhCchhcCccCcEEEE
Confidence 10 001111 12367999999999999975432 5644443
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.4e-27 Score=192.93 Aligned_cols=222 Identities=17% Similarity=0.116 Sum_probs=160.3
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCC-CCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDP-NDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
++++|+++||||+|+||++++++|+++|++|++++++. +............ ..++.++.+|++|.++++.+++
T Consensus 4 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (255)
T 3icc_A 4 MLKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSN--GGSAFSIGANLESLHGVEALYSSLDN 81 (255)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhc--CCceEEEecCcCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999875543 3333322222211 2578899999999988777664
Q ss_pred ---------CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCCCC
Q 023515 81 ---------GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTP 145 (281)
Q Consensus 81 ---------~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~ 145 (281)
++|++|||||.... ...+.++..+++|+.++.++++++.+.+ +.+++|++||..++.+.+
T Consensus 82 ~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~----- 156 (255)
T 3icc_A 82 ELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRISLP----- 156 (255)
T ss_dssp HHHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGTSCCT-----
T ss_pred HhcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChhhccCCC-----
Confidence 28999999996322 2334466889999999999999999864 345899999987765211
Q ss_pred CeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCC
Q 023515 146 DVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT 222 (281)
Q Consensus 146 ~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~ 222 (281)
....|+.+|++.+.+++.++.++ |+++++++||.+.++....... ............
T Consensus 157 -----------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~-~~~~~~~~~~~~-- 216 (255)
T 3icc_A 157 -----------------DFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFVKTDMNAELLS-DPMMKQYATTIS-- 216 (255)
T ss_dssp -----------------TBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCSSSTTTTT-SHHHHHHHHHTS--
T ss_pred -----------------CcchhHHhHHHHHHHHHHHHHHHHhcCeEEEEEEEeeecccchhhhcc-cHHHHHhhhccC--
Confidence 12459999999999999998874 8999999999999886543322 111112122211
Q ss_pred CCCCCccceeHHHHHHHHHHhhcCCC--CCcc-EEEec
Q 023515 223 YPNVTFGWVNVKDVANAHIQAFEVPS--ANGR-YCLVE 257 (281)
Q Consensus 223 ~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~-~~~~~ 257 (281)
....+.+++|+|+++++++.... ..|. +++.|
T Consensus 217 ---~~~~~~~~~dva~~~~~l~s~~~~~~tG~~i~vdg 251 (255)
T 3icc_A 217 ---AFNRLGEVEDIADTAAFLASPDSRWVTGQLIDVSG 251 (255)
T ss_dssp ---TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESS
T ss_pred ---CcCCCCCHHHHHHHHHHHhCcccCCccCCEEEecC
Confidence 23457899999999999997543 3564 44443
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.7e-27 Score=195.42 Aligned_cols=223 Identities=17% Similarity=0.120 Sum_probs=160.3
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC-cchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
.+++|++|||||+|+||++++++|+++|++|++++++..+ .+.+....... ..++.++++|++|.+++.++++
T Consensus 15 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~ 92 (270)
T 3is3_A 15 RLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKAL--GSDAIAIKADIRQVPEIVKLFDQAVA 92 (270)
T ss_dssp CCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999998876532 22222222221 2578999999999998888776
Q ss_pred ---CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCCC-ccEEEEeccceee-ecCCCCCCCCeeee
Q 023515 81 ---GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAV-LNTGKPRTPDVVVD 150 (281)
Q Consensus 81 ---~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~-~~~~~~~~~~~~~~ 150 (281)
++|++|||||.... ...+.|+..+++|+.++.++++++.+.+. .+++|++||..+. .+.+
T Consensus 93 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~---------- 162 (270)
T 3is3_A 93 HFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSKDFSVP---------- 162 (270)
T ss_dssp HHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTTTCCCT----------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhccCCCC----------
Confidence 78999999996432 23455778999999999999999998642 3589999997532 1100
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCC-------C-CccHHHHHH-HHh
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPT-------L-NTSAAAVLS-LIK 218 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~-------~-~~~~~~~~~-~~~ 218 (281)
....|+.||++.+.+++.++.++ |+++++++||.+.++..... . ......... ...
T Consensus 163 ------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (270)
T 3is3_A 163 ------------KHSLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMAAH 230 (270)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTTHHHHGGGGSTTGGGSCHHHHHHHHHH
T ss_pred ------------CCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhhhhccccccccchHHHHHHHHh
Confidence 12459999999999999998874 89999999999998853210 0 001111222 112
Q ss_pred CCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCcc-EEEec
Q 023515 219 GAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGR-YCLVE 257 (281)
Q Consensus 219 ~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~-~~~~~ 257 (281)
.. ....+.+++|+|+++++++.... ..|+ +++.|
T Consensus 231 ~~-----p~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdG 267 (270)
T 3is3_A 231 AS-----PLHRNGWPQDVANVVGFLVSKEGEWVNGKVLTLDG 267 (270)
T ss_dssp HS-----TTCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred cC-----CCCCCCCHHHHHHHHHHHcCCccCCccCcEEEeCC
Confidence 11 23347799999999999997543 3564 44433
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=99.95 E-value=7.1e-27 Score=196.13 Aligned_cols=219 Identities=17% Similarity=0.156 Sum_probs=158.1
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCC-CCcchhhhhhhccCCCCcEEEEEcCCCC----cCcHHHHhc
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDP-NDPKKTRHLLALDGASERLQLFKANLLE----EGSFDSIVD 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~~----~~~~~~~~~ 80 (281)
.+++|+++||||+|+||++++++|+++|++|++++|+. ++...+....... ...++.++++|++| .+++.++++
T Consensus 20 ~l~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~-~~~~~~~~~~Dv~~~~~~~~~v~~~~~ 98 (288)
T 2x9g_A 20 HMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKE-RSNTAVVCQADLTNSNVLPASCEEIIN 98 (288)
T ss_dssp --CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHH-STTCEEEEECCCSCSTTHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhh-cCCceEEEEeecCCccCCHHHHHHHHH
Confidence 46789999999999999999999999999999999987 4443333222101 12468999999999 777777665
Q ss_pred -------CCcEeEEecccCCC---------------CCCCccchhhhhHHHHHHHHHHHhhhCCC---------ccEEEE
Q 023515 81 -------GCDGVCHTASPFYH---------------DAKDPQVELLDPAVKGTLNVLNSCAKFPS---------IKRVVL 129 (281)
Q Consensus 81 -------~~d~Vih~a~~~~~---------------~~~~~~~~~~~~n~~~~~~l~~~~~~~~~---------~~~~v~ 129 (281)
++|+||||||.... ...+.++..+++|+.++.++++++.+.+. .++||+
T Consensus 99 ~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iv~ 178 (288)
T 2x9g_A 99 SCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVN 178 (288)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCCEEEEE
T ss_pred HHHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCCeEEEE
Confidence 78999999996321 11234567899999999999999987532 458999
Q ss_pred eccceeeecCCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCC
Q 023515 130 TSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTL 206 (281)
Q Consensus 130 ~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~ 206 (281)
+||..++.+.+ ....|+.||++.+.+++.++.++ |+++++|+||.+++|. . ..
T Consensus 179 isS~~~~~~~~----------------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~-~-~~ 234 (288)
T 2x9g_A 179 LCDAMVDQPCM----------------------AFSLYNMGKHALVGLTQSAALELAPYGIRVNGVAPGVSLLPV-A-MG 234 (288)
T ss_dssp ECCTTTTSCCT----------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSCSCCT-T-SC
T ss_pred EecccccCCCC----------------------CCchHHHHHHHHHHHHHHHHHHhhccCeEEEEEEeccccCcc-c-cC
Confidence 99987654211 12459999999999999988764 8999999999999987 3 11
Q ss_pred CccHHHHHHHHhCCCCCCCCCccc-eeHHHHHHHHHHhhcCCC--CCccEEEec
Q 023515 207 NTSAAAVLSLIKGAQTYPNVTFGW-VNVKDVANAHIQAFEVPS--ANGRYCLVE 257 (281)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~-i~~~D~a~~i~~~~~~~~--~~g~~~~~~ 257 (281)
...........+ ...+ .+++|+|+++++++.... ..|.++..+
T Consensus 235 ---~~~~~~~~~~~p-----~~r~~~~pedvA~~v~~l~s~~~~~itG~~i~vd 280 (288)
T 2x9g_A 235 ---EEEKDKWRRKVP-----LGRREASAEQIADAVIFLVSGSAQYITGSIIKVD 280 (288)
T ss_dssp ---HHHHHHHHHTCT-----TTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEES
T ss_pred ---hHHHHHHHhhCC-----CCCCCCCHHHHHHHHHHHhCccccCccCCEEEEC
Confidence 122222222221 1224 799999999999997533 356554443
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-27 Score=201.05 Aligned_cols=224 Identities=13% Similarity=0.085 Sum_probs=158.8
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhcc---CCCCcEEEEEcCCCCcCcHHHHhc--
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALD---GASERLQLFKANLLEEGSFDSIVD-- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~-- 80 (281)
.+++|+|+||||+|+||++++++|+++|++|++++|+.++...+....... ....++.++++|++|.+++.++++
T Consensus 15 ~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 94 (303)
T 1yxm_A 15 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST 94 (303)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHH
Confidence 356799999999999999999999999999999999865443332222110 012478999999999998888776
Q ss_pred -----CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCe
Q 023515 81 -----GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDV 147 (281)
Q Consensus 81 -----~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (281)
++|+||||||... ....+.++..+++|+.++.++++++.+.+ +.++||++||.. ..+.+
T Consensus 95 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~-~~~~~------- 166 (303)
T 1yxm_A 95 LDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPT-KAGFP------- 166 (303)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCC-TTCCT-------
T ss_pred HHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEeec-ccCCC-------
Confidence 5899999999532 12234466889999999999999988731 246899999976 33110
Q ss_pred eeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCc-cHHHHHHHHhCCCCC
Q 023515 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNT-SAAAVLSLIKGAQTY 223 (281)
Q Consensus 148 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~-~~~~~~~~~~~~~~~ 223 (281)
....|+.+|.+.+.+++.++.++ |++++++|||.++|+........ ............
T Consensus 167 ---------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~--- 228 (303)
T 1yxm_A 167 ---------------LAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKI--- 228 (303)
T ss_dssp ---------------TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGGS---
T ss_pred ---------------cchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCcccchhhhhccccchHHHHHHHhcC---
Confidence 12359999999999999998875 89999999999999842111110 001111111111
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCC--CCc-cEEEec
Q 023515 224 PNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (281)
Q Consensus 224 ~~~~~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~ 257 (281)
....+++++|+|+++++++.... ..| .+++.+
T Consensus 229 --p~~~~~~~~dvA~~i~~l~~~~~~~~~G~~~~v~g 263 (303)
T 1yxm_A 229 --PAKRIGVPEEVSSVVCFLLSPAASFITGQSVDVDG 263 (303)
T ss_dssp --TTSSCBCTHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred --cccCCCCHHHHHHHHHHHhCcccccCCCcEEEECC
Confidence 12347899999999999997543 345 455554
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=5.8e-27 Score=194.86 Aligned_cols=221 Identities=12% Similarity=0.025 Sum_probs=160.4
Q ss_pred ccCCCeEEEeCCc--hHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 6 AAAGKVVCVTGAS--GYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 6 ~~~~~~ilItGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
..++|+||||||+ |+||++++++|+++|++|++++|+....+.+..+.... .++.++++|++|.++++++++
T Consensus 11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~ 87 (271)
T 3ek2_A 11 FLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEF---GSELVFPCDVADDAQIDALFASLK 87 (271)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHT---TCCCEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHc---CCcEEEECCCCCHHHHHHHHHHHH
Confidence 3568999999999 99999999999999999999999854433333332222 347899999999998888876
Q ss_pred ----CCcEeEEecccCCC----------CCCCccchhhhhHHHHHHHHHHHhhhCCC-ccEEEEeccceeeecCCCCCCC
Q 023515 81 ----GCDGVCHTASPFYH----------DAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAVLNTGKPRTP 145 (281)
Q Consensus 81 ----~~d~Vih~a~~~~~----------~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~ 145 (281)
++|++|||||.... ...+.++..+++|+.++.++++++.+.+. .++||++||..++.+.+
T Consensus 88 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~----- 162 (271)
T 3ek2_A 88 THWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERAIP----- 162 (271)
T ss_dssp HHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCT-----
T ss_pred HHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEeccccccCCC-----
Confidence 67999999997432 23345678999999999999999998642 45899999987765221
Q ss_pred CeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCC
Q 023515 146 DVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT 222 (281)
Q Consensus 146 ~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~ 222 (281)
....|+.+|++.+.+++.++.++ |+++++++||.|.++..... ..............
T Consensus 163 -----------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~-~~~~~~~~~~~~~~-- 222 (271)
T 3ek2_A 163 -----------------NYNTMGLAKAALEASVRYLAVSLGAKGVRVNAISAGPIKTLAASGI-KSFGKILDFVESNS-- 222 (271)
T ss_dssp -----------------TTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCC-----CCC-HHHHHHHHHHHHHS--
T ss_pred -----------------CccchhHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccchhhhcc-cchHHHHHHHHhcC--
Confidence 12459999999999999998764 89999999999998764322 11122222222222
Q ss_pred CCCCCccceeHHHHHHHHHHhhcCCC--CCc-cEEEec
Q 023515 223 YPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (281)
Q Consensus 223 ~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g-~~~~~~ 257 (281)
....+..++|+|+++++++.... ..| .+++.|
T Consensus 223 ---~~~~~~~pedva~~i~~l~s~~~~~~tG~~i~vdg 257 (271)
T 3ek2_A 223 ---PLKRNVTIEQVGNAGAFLLSDLASGVTAEVMHVDS 257 (271)
T ss_dssp ---TTSSCCCHHHHHHHHHHHHSGGGTTCCSEEEEEST
T ss_pred ---CcCCCCCHHHHHHHHHHHcCcccCCeeeeEEEECC
Confidence 12347799999999999998643 356 455544
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-28 Score=206.57 Aligned_cols=223 Identities=17% Similarity=0.228 Sum_probs=158.9
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCc---chhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP---KKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
||+|+||||||+||++++++|+++|++|++++|+.... .....+..+. ..+++++++|++|++++.++++++|+|
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~--~~~v~~v~~D~~d~~~l~~~~~~~d~v 81 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFK--ASGANIVHGSIDDHASLVEAVKNVDVV 81 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHH--TTTCEEECCCTTCHHHHHHHHHTCSEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHH--hCCCEEEEeccCCHHHHHHHHcCCCEE
Confidence 57899999999999999999999999999999986532 1111111111 146899999999999999999999999
Q ss_pred EEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCC-ccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCC
Q 023515 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSE 164 (281)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 164 (281)
||+|+... +.++.+++++|++. + +++||+ |+.+. .. +|..+..|. .
T Consensus 82 i~~a~~~~--------------~~~~~~l~~aa~~~-g~v~~~v~-S~~g~---~~---------~~~~~~~p~-----~ 128 (308)
T 1qyc_A 82 ISTVGSLQ--------------IESQVNIIKAIKEV-GTVKRFFP-SEFGN---DV---------DNVHAVEPA-----K 128 (308)
T ss_dssp EECCCGGG--------------SGGGHHHHHHHHHH-CCCSEEEC-SCCSS---CT---------TSCCCCTTH-----H
T ss_pred EECCcchh--------------hhhHHHHHHHHHhc-CCCceEee-ccccc---Cc---------cccccCCcc-----h
Confidence 99997521 44678999999998 6 899984 43211 10 122222221 1
Q ss_pred chhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC--C--CCCCCCccceeHHHHHHHH
Q 023515 165 LWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA--Q--TYPNVTFGWVNVKDVANAH 240 (281)
Q Consensus 165 ~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~i~~~D~a~~i 240 (281)
..| .+|..+|.++++ .+++++++||+.++++......... .....+. . ..++..++|++++|+|+++
T Consensus 129 ~~y-~sK~~~e~~~~~----~~~~~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~ 199 (308)
T 1qyc_A 129 SVF-EVKAKVRRAIEA----EGIPYTYVSSNCFAGYFLRSLAQAG----LTAPPRDKVVILGDGNARVVFVKEEDIGTFT 199 (308)
T ss_dssp HHH-HHHHHHHHHHHH----HTCCBEEEECCEEHHHHTTTTTCTT----CSSCCSSEEEEETTSCCEEEEECHHHHHHHH
T ss_pred hHH-HHHHHHHHHHHh----cCCCeEEEEeceecccccccccccc----ccCCCCCceEEecCCCceEEEecHHHHHHHH
Confidence 348 999999998854 5899999999999875322111000 0000111 1 1246778999999999999
Q ss_pred HHhhcCCCCCc-cEEEe--cCCCCHHHHHHHHHHhCCC
Q 023515 241 IQAFEVPSANG-RYCLV--ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 241 ~~~~~~~~~~g-~~~~~--~~~~t~~e~~~~i~~~~~~ 275 (281)
+.++.++...+ .|++. ++.+|+.|+++.+.+.+|.
T Consensus 200 ~~~l~~~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~ 237 (308)
T 1qyc_A 200 IKAVDDPRTLNKTLYLRLPANTLSLNELVALWEKKIDK 237 (308)
T ss_dssp HTTSSCGGGTTEEEECCCGGGEEEHHHHHHHHHHHTTS
T ss_pred HHHHhCccccCeEEEEeCCCCccCHHHHHHHHHHHhCC
Confidence 99998765434 66664 3689999999999999985
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.6e-27 Score=192.72 Aligned_cols=205 Identities=16% Similarity=0.137 Sum_probs=153.0
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhcc-CCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALD-GASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
+++|++|||||+|+||++++++|+++|++|++++|+.++.+.+.+..... ....++.++++|++|.++++++++
T Consensus 5 ~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (250)
T 3nyw_A 5 KQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQK 84 (250)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHh
Confidence 56899999999999999999999999999999999876555544332221 112568899999999988888775
Q ss_pred --CCcEeEEecccCCCC----CCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 --GCDGVCHTASPFYHD----AKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 --~~d~Vih~a~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
++|++|||||..... ..+.|+..+++|+.++.++++++.+.+ +.+++|++||..+..+..
T Consensus 85 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~----------- 153 (250)
T 3nyw_A 85 YGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKYGFA----------- 153 (250)
T ss_dssp HCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC-------C-----------
T ss_pred cCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEccHHhcCCCC-----------
Confidence 689999999973321 224467899999999999999997642 457999999987765221
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCc
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (281)
+...|+.+|.+.+.+++.++.++ |+++++++||.+.++.. ... . . .....
T Consensus 154 -----------~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~-----------~~~-~-~---~~~~~ 206 (250)
T 3nyw_A 154 -----------DGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNTDMA-----------KKA-G-T---PFKDE 206 (250)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHHH-----------HHT-T-C---CSCGG
T ss_pred -----------CCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCchh-----------hhc-C-C---Ccccc
Confidence 12459999999999999998874 89999999999987531 110 0 0 01123
Q ss_pred cceeHHHHHHHHHHhhcCCCC
Q 023515 229 GWVNVKDVANAHIQAFEVPSA 249 (281)
Q Consensus 229 ~~i~~~D~a~~i~~~~~~~~~ 249 (281)
.+++++|+|+++++++..+..
T Consensus 207 ~~~~p~dva~~v~~l~s~~~~ 227 (250)
T 3nyw_A 207 EMIQPDDLLNTIRCLLNLSEN 227 (250)
T ss_dssp GSBCHHHHHHHHHHHHTSCTT
T ss_pred cCCCHHHHHHHHHHHHcCCCc
Confidence 478999999999999997654
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-26 Score=191.42 Aligned_cols=211 Identities=15% Similarity=0.157 Sum_probs=160.8
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCC---CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRG---YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-- 80 (281)
.+++|+||||||+|+||++++++|+++| ++|++++|+.++.+.+..+... ..++.++.+|++|.++++++++
T Consensus 18 ~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~~~l~~~---~~~~~~~~~Dl~~~~~v~~~~~~~ 94 (267)
T 1sny_A 18 GSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKN---HSNIHILEIDLRNFDAYDKLVADI 94 (267)
T ss_dssp --CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHH---CTTEEEEECCTTCGGGHHHHHHHH
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHHHHhhcc---CCceEEEEecCCChHHHHHHHHHH
Confidence 3568999999999999999999999999 9999999988765554433222 2468999999999999988886
Q ss_pred -------CCcEeEEecccCC------CCCCCccchhhhhHHHHHHHHHHHhhhCC---------C-----ccEEEEeccc
Q 023515 81 -------GCDGVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKFP---------S-----IKRVVLTSSM 133 (281)
Q Consensus 81 -------~~d~Vih~a~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---------~-----~~~~v~~SS~ 133 (281)
++|+||||||... ....+.++..+++|+.++.++++++.+.+ + .++||++||.
T Consensus 95 ~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~ 174 (267)
T 1sny_A 95 EGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSI 174 (267)
T ss_dssp HHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCG
T ss_pred HHhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEEEecc
Confidence 6999999999643 12234466789999999999999998752 1 4689999998
Q ss_pred eeeecCCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccH
Q 023515 134 AAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSA 210 (281)
Q Consensus 134 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~ 210 (281)
.++.+... . .....|+.+|.+.+.+++.++.+ .|++++++|||.+.++....
T Consensus 175 ~~~~~~~~-----------~--------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~------ 229 (267)
T 1sny_A 175 LGSIQGNT-----------D--------GGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMGGS------ 229 (267)
T ss_dssp GGCSTTCC-----------S--------CCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTTTCT------
T ss_pred cccccCCC-----------C--------CCchHHHHHHHHHHHHHHHHHHHhhcCCcEEEEeCCcceecCCCCC------
Confidence 77652210 0 01245999999999999998876 58999999999998875321
Q ss_pred HHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCccEEEe-cCCCC
Q 023515 211 AAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLV-ERVSH 261 (281)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~-~~~~t 261 (281)
..++.++|+|+.++.++.... ..|.|+.. |+.+.
T Consensus 230 -----------------~~~~~~~~~a~~~~~~~~~~~~~~~G~~~~~~g~~~~ 266 (267)
T 1sny_A 230 -----------------SAPLDVPTSTGQIVQTISKLGEKQNGGFVNYDGTPLA 266 (267)
T ss_dssp -----------------TCSBCHHHHHHHHHHHHHHCCGGGTTCEECTTSCBCC
T ss_pred -----------------CCCCCHHHHHHHHHHHHHhcCcCCCCcEEccCCcCcC
Confidence 125789999999999997543 35666543 44443
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=189.88 Aligned_cols=211 Identities=18% Similarity=0.180 Sum_probs=153.8
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------C
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------G 81 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~ 81 (281)
+|+++||||+|+||++++++|+++|++|++++|+.++ +.+.. ++.++++|++| ++++++++ +
T Consensus 2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~---~~~~~-------~~~~~~~D~~~-~~~~~~~~~~~~~~g~ 70 (239)
T 2ekp_A 2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEE---AAQSL-------GAVPLPTDLEK-DDPKGLVKRALEALGG 70 (239)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH---HHHHH-------TCEEEECCTTT-SCHHHHHHHHHHHHTS
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH---HHHhh-------CcEEEecCCch-HHHHHHHHHHHHHcCC
Confidence 6799999999999999999999999999999998643 11111 26788999999 88777654 7
Q ss_pred CcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeecCC
Q 023515 82 CDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (281)
Q Consensus 82 ~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~ 153 (281)
+|++|||||.... ...+.|+..+++|+.++.++++++.+.+ +.++||++||..++.+.. .
T Consensus 71 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------~ 138 (239)
T 2ekp_A 71 LHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWGRVLFIGSVTTFTAGG------------P 138 (239)
T ss_dssp CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT------------T
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhccCCC------------C
Confidence 8999999986321 2334577899999999999999997542 467999999987764210 0
Q ss_pred CCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccc
Q 023515 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGW 230 (281)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (281)
+ ....|+.||.+.+.+++.++.++ |+++++++||.+.++...... .............+ ...+
T Consensus 139 ~--------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~-~~~~~~~~~~~~~p-----~~~~ 204 (239)
T 2ekp_A 139 V--------PIPAYTTAKTALLGLTRALAKEWARLGIRVNLLCPGYVETEFTLPLR-QNPELYEPITARIP-----MGRW 204 (239)
T ss_dssp S--------CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHH-TCHHHHHHHHTTCT-----TSSC
T ss_pred C--------CCccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCccCchhhccc-cCHHHHHHHHhcCC-----CCCC
Confidence 0 12459999999999999998775 899999999999987532100 01111222222111 2347
Q ss_pred eeHHHHHHHHHHhhcCCC--CCccEEEe
Q 023515 231 VNVKDVANAHIQAFEVPS--ANGRYCLV 256 (281)
Q Consensus 231 i~~~D~a~~i~~~~~~~~--~~g~~~~~ 256 (281)
.+++|+|+++++++.... ..|.++..
T Consensus 205 ~~~~dvA~~~~~l~s~~~~~~tG~~~~v 232 (239)
T 2ekp_A 205 ARPEEIARVAAVLCGDEAEYLTGQAVAV 232 (239)
T ss_dssp BCHHHHHHHHHHHTSGGGTTCCSCEEEE
T ss_pred cCHHHHHHHHHHHcCchhcCCCCCEEEE
Confidence 899999999999997543 25654444
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-28 Score=205.12 Aligned_cols=223 Identities=13% Similarity=0.121 Sum_probs=157.6
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC-Cc---chhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN-DP---KKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~---~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~ 84 (281)
||+|+||||||+||++++++|+++|++|++++|+.. .. .....+.... ..+++++++|++|++++.++++++|+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~--~~~v~~v~~D~~d~~~l~~~~~~~d~ 79 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQ--SLGVILLEGDINDHETLVKAIKQVDI 79 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHH--HTTCEEEECCTTCHHHHHHHHTTCSE
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHH--hCCCEEEEeCCCCHHHHHHHHhCCCE
Confidence 678999999999999999999999999999999862 11 1111111111 13688999999999999999999999
Q ss_pred eEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCC-ccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccC
Q 023515 85 VCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQS 163 (281)
Q Consensus 85 Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 163 (281)
|||+|+... +.++.+++++|++. + +++||+ |+ +. .. . +|..+..|.
T Consensus 80 vi~~a~~~~--------------~~~~~~l~~aa~~~-g~v~~~v~-S~---~g-~~----~----~~~~~~~p~----- 126 (307)
T 2gas_A 80 VICAAGRLL--------------IEDQVKIIKAIKEA-GNVKKFFP-SE---FG-LD----V----DRHDAVEPV----- 126 (307)
T ss_dssp EEECSSSSC--------------GGGHHHHHHHHHHH-CCCSEEEC-SC---CS-SC----T----TSCCCCTTH-----
T ss_pred EEECCcccc--------------cccHHHHHHHHHhc-CCceEEee-cc---cc-cC----c----ccccCCCcc-----
Confidence 999998532 45678999999987 6 889983 33 21 11 0 112222221
Q ss_pred CchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC--C--CCCCCCccceeHHHHHHH
Q 023515 164 ELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA--Q--TYPNVTFGWVNVKDVANA 239 (281)
Q Consensus 164 ~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~i~~~D~a~~ 239 (281)
.+.| .+|..+|.+++. .+++++++||+.++++......... .....+. . ..++..++|++++|+|++
T Consensus 127 ~~~y-~sK~~~e~~~~~----~~i~~~~lrp~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~ 197 (307)
T 2gas_A 127 RQVF-EEKASIRRVIEA----EGVPYTYLCCHAFTGYFLRNLAQLD----ATDPPRDKVVILGDGNVKGAYVTEADVGTF 197 (307)
T ss_dssp HHHH-HHHHHHHHHHHH----HTCCBEEEECCEETTTTGGGTTCTT----CSSCCSSEEEEETTSCSEEEEECHHHHHHH
T ss_pred hhHH-HHHHHHHHHHHH----cCCCeEEEEcceeeccccccccccc----cccCCCCeEEEecCCCcceEEeeHHHHHHH
Confidence 1359 999999998853 5899999999998875422110000 0000111 1 124567899999999999
Q ss_pred HHHhhcCCCCCc-cEEEe--cCCCCHHHHHHHHHHhCCC
Q 023515 240 HIQAFEVPSANG-RYCLV--ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 240 i~~~~~~~~~~g-~~~~~--~~~~t~~e~~~~i~~~~~~ 275 (281)
++.++.++...+ .|++. ++.+|+.|+++.+.+.+|.
T Consensus 198 ~~~~l~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~ 236 (307)
T 2gas_A 198 TIRAANDPNTLNKAVHIRLPKNYLTQNEVIALWEKKIGK 236 (307)
T ss_dssp HHHHHTCGGGTTEEEECCCGGGEEEHHHHHHHHHHHHTS
T ss_pred HHHHHcCccccCceEEEeCCCCcCCHHHHHHHHHHHhCC
Confidence 999998765434 56654 3689999999999999875
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=191.59 Aligned_cols=216 Identities=19% Similarity=0.149 Sum_probs=156.6
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+|+++||||+|+||++++++|+++| +.|++++|+.++.+.+.... ..++.++++|++|.++++++++
T Consensus 2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 76 (254)
T 3kzv_A 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKY-----GDRFFYVVGDITEDSVLKQLVNAAVKGH 76 (254)
T ss_dssp CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHH-----GGGEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHh-----CCceEEEECCCCCHHHHHHHHHHHHHhc
Confidence 6899999999999999999999985 78988988765444333221 2468999999999998888776
Q ss_pred -CCcEeEEecccCCC------CCCCccchhhhhHHHHHHHHHHHhhhCC--CccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 -GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 -~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
++|++|||||.... ...+.|+..+++|+.++.++++++.+.+ ..+++|++||..++.+.+
T Consensus 77 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~g~iv~isS~~~~~~~~----------- 145 (254)
T 3kzv_A 77 GKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTNGNVVFVSSDACNMYFS----------- 145 (254)
T ss_dssp SCCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCSCCCCSSC-----------
T ss_pred CCccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEcCchhccCCC-----------
Confidence 78999999996322 2234567899999999999999996542 126999999987765211
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc-CCcEEEEcCCcccCCCCCCCCCc------cHHHHHHHHhCCCCCC
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK-SIDLVTINPAMVIGPLLQPTLNT------SAAAVLSLIKGAQTYP 224 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-g~~~~~irp~~v~g~~~~~~~~~------~~~~~~~~~~~~~~~~ 224 (281)
....|+.||.+.+.+++.++.++ |+++++++||.+.++........ ............
T Consensus 146 -----------~~~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 210 (254)
T 3kzv_A 146 -----------SWGAYGSSKAALNHFAMTLANEERQVKAIAVAPGIVDTDMQVNIRENVGPSSMSAEQLKMFRGLK---- 210 (254)
T ss_dssp -----------CSHHHHHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCCCCSCCCCCCCCTTTSCHHHHHHHHHHH----
T ss_pred -----------CcchHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcccchhHHHhhcccCccccCHHHHHHHHHHH----
Confidence 12459999999999999999876 89999999999999865432110 122222222211
Q ss_pred CCCccceeHHHHHHHHHHhhcCCC---CCccEEEe
Q 023515 225 NVTFGWVNVKDVANAHIQAFEVPS---ANGRYCLV 256 (281)
Q Consensus 225 ~~~~~~i~~~D~a~~i~~~~~~~~---~~g~~~~~ 256 (281)
....+.+++|+|+++++++.... ..|.++..
T Consensus 211 -~~~r~~~p~dva~~v~~L~s~~~~~~itG~~i~v 244 (254)
T 3kzv_A 211 -ENNQLLDSSVPATVYAKLALHGIPDGVNGQYLSY 244 (254)
T ss_dssp -TTC----CHHHHHHHHHHHHHCCCGGGTTCEEET
T ss_pred -hcCCcCCcccHHHHHHHHHhhcccCCCCccEEEe
Confidence 12347899999999999998653 35655443
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=5.2e-27 Score=195.35 Aligned_cols=222 Identities=12% Similarity=0.082 Sum_probs=161.7
Q ss_pred hccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 5 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
+.+++|+|+||||+|+||++++++|+++|++|++++|+.+..+.+....... ..++.++++|++|.+++.++++
T Consensus 27 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~ 104 (272)
T 1yb1_A 27 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL--GAKVHTFVVDCSNREDIYSSAKKVKA 104 (272)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhc--CCeEEEEEeeCCCHHHHHHHHHHHHH
Confidence 3467899999999999999999999999999999999865443332222111 2468999999999988887775
Q ss_pred ---CCcEeEEecccCCCC-----CCCccchhhhhHHHHHHHHHHHhhhC---CCccEEEEeccceeeecCCCCCCCCeee
Q 023515 81 ---GCDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (281)
Q Consensus 81 ---~~d~Vih~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (281)
++|+||||||..... ..+.++..+++|+.++.++++++.+. .+.++||++||..++.+.
T Consensus 105 ~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~---------- 174 (272)
T 1yb1_A 105 EIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSV---------- 174 (272)
T ss_dssp HTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CCCH----------
T ss_pred HCCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEechhhcCCC----------
Confidence 789999999964321 12345688999999999988888753 256799999998775411
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc------CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCC
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK------SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY 223 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~------g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~ 223 (281)
+ ....|+.+|.+.+.+++.++.++ |+++++++||.+.++..... ..
T Consensus 175 -------~-----~~~~Y~~sK~a~~~l~~~la~e~~~~~~~gi~v~~v~Pg~v~t~~~~~~-------~~--------- 226 (272)
T 1yb1_A 175 -------P-----FLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNP-------ST--------- 226 (272)
T ss_dssp -------H-----HHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTCT-------HH---------
T ss_pred -------C-----CchhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCccccc-------cc---------
Confidence 0 12459999999999999988764 89999999999998763210 00
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCCCCccEEEecCCCCHHHHHHHHHHhCC
Q 023515 224 PNVTFGWVNVKDVANAHIQAFEVPSANGRYCLVERVSHYSEIVNIIRELYP 274 (281)
Q Consensus 224 ~~~~~~~i~~~D~a~~i~~~~~~~~~~g~~~~~~~~~t~~e~~~~i~~~~~ 274 (281)
....+++++|+|++++.++.++.. +...+.... +...+.+.+|
T Consensus 227 --~~~~~~~~~dva~~i~~~~~~~~~---~~~~~~~~~---~~~~~~~~~P 269 (272)
T 1yb1_A 227 --SLGPTLEPEEVVNRLMHGILTEQK---MIFIPSSIA---FLTTLERILP 269 (272)
T ss_dssp --HHCCCCCHHHHHHHHHHHHHTTCS---EEEECCCCC---HHHHHHTTC-
T ss_pred --cccCCCCHHHHHHHHHHHHHcCCC---EEECCchHH---HHHHHHHhCC
Confidence 012378999999999999987654 233333333 3344555554
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=188.50 Aligned_cols=210 Identities=17% Similarity=0.156 Sum_probs=157.9
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------- 80 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------- 80 (281)
+||+++||||+|+||++++++|+++|++|++++|+.++.+.+....... ...++.++++|++|++++.++++
T Consensus 1 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 79 (235)
T 3l77_A 1 EMKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQE-QGVEVFYHHLDVSKAESVEEFSKKVLERFG 79 (235)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH-HCCCEEEEECCTTCHHHHHHHCC-HHHHHS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhh-cCCeEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence 3789999999999999999999999999999999876544433322111 12578999999999999888876
Q ss_pred CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC--CccEEEEeccceeeecCCCCCCCCeeeecCC
Q 023515 81 GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (281)
Q Consensus 81 ~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~ 153 (281)
++|++|||||.... ...+.++..+++|+.++.++++++.+.+ +.+++|++||..+..+.+
T Consensus 80 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~ii~~sS~~~~~~~~------------- 146 (235)
T 3l77_A 80 DVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTGGLALVTTSDVSARLIP------------- 146 (235)
T ss_dssp SCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSCCT-------------
T ss_pred CCCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEEecchhcccCC-------------
Confidence 78999999996332 2345567899999999999999998742 235788888876654211
Q ss_pred CCChhhhccCCchhhhhHHHHHHHHHHHHHh-cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCcccee
Q 023515 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKE-KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVN 232 (281)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 232 (281)
....|+.+|++.+.+++.+..+ .|+++++++||.+.++....... ......++.
T Consensus 147 ---------~~~~Y~~sKaa~~~~~~~l~~~~~~i~v~~v~PG~v~T~~~~~~~~----------------~~~~~~~~~ 201 (235)
T 3l77_A 147 ---------YGGGYVSTKWAARALVRTFQIENPDVRFFELRPGAVDTYFGGSKPG----------------KPKEKGYLK 201 (235)
T ss_dssp ---------TCHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEECSBSSSTTTCCSC----------------CCGGGTCBC
T ss_pred ---------CcchHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCccccccccccCC----------------cccccCCCC
Confidence 1245999999999999998554 48999999999998876332111 011225789
Q ss_pred HHHHHHHHHHhhcCCCC--CccEEEe
Q 023515 233 VKDVANAHIQAFEVPSA--NGRYCLV 256 (281)
Q Consensus 233 ~~D~a~~i~~~~~~~~~--~g~~~~~ 256 (281)
++|+|+++++++.++.. .|...+.
T Consensus 202 p~dva~~v~~l~~~~~~~~~~~~~~~ 227 (235)
T 3l77_A 202 PDEIAEAVRCLLKLPKDVRVEELMLR 227 (235)
T ss_dssp HHHHHHHHHHHHTSCTTCCCCEEEEC
T ss_pred HHHHHHHHHHHHcCCCCCccceEEEe
Confidence 99999999999998764 3444443
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-26 Score=187.66 Aligned_cols=201 Identities=15% Similarity=0.128 Sum_probs=138.2
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
++||+||||||||+||++++++|+++| ++|++++|++++...+. ..+++++++|++|++++.++++++|+|
T Consensus 21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~--------~~~~~~~~~Dl~d~~~~~~~~~~~D~v 92 (236)
T 3qvo_A 21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPY--------PTNSQIIMGDVLNHAALKQAMQGQDIV 92 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSC--------CTTEEEEECCTTCHHHHHHHHTTCSEE
T ss_pred CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccc--------cCCcEEEEecCCCHHHHHHHhcCCCEE
Confidence 457899999999999999999999999 89999999875443311 146899999999999999999999999
Q ss_pred EEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCc
Q 023515 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL 165 (281)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 165 (281)
||+|+... ....+.++++++++. +.++||++||..++...+. ......+..+..
T Consensus 93 v~~a~~~~-------------~~~~~~~~~~~~~~~-~~~~iV~iSS~~~~~~~~~---~~~~~~~~~~~~--------- 146 (236)
T 3qvo_A 93 YANLTGED-------------LDIQANSVIAAMKAC-DVKRLIFVLSLGIYDEVPG---KFVEWNNAVIGE--------- 146 (236)
T ss_dssp EEECCSTT-------------HHHHHHHHHHHHHHT-TCCEEEEECCCCC-------------------CG---------
T ss_pred EEcCCCCc-------------hhHHHHHHHHHHHHc-CCCEEEEEecceecCCCCc---ccccchhhcccc---------
Confidence 99997411 113567899999998 7889999999877652211 111112222111
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhc
Q 023515 166 WYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFE 245 (281)
Q Consensus 166 ~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~ 245 (281)
+...+..+|..+ ++.|++++++|||.++++...... . ...+. .....+++++|+|+++++++.
T Consensus 147 -~~~~~~~~~~~l----~~~gi~~~~vrPg~i~~~~~~~~~-~-------~~~~~----~~~~~~i~~~DvA~~i~~ll~ 209 (236)
T 3qvo_A 147 -PLKPFRRAADAI----EASGLEYTILRPAWLTDEDIIDYE-L-------TSRNE----PFKGTIVSRKSVAALITDIID 209 (236)
T ss_dssp -GGHHHHHHHHHH----HTSCSEEEEEEECEEECCSCCCCE-E-------ECTTS----CCSCSEEEHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHH----HHCCCCEEEEeCCcccCCCCcceE-E-------eccCC----CCCCcEECHHHHHHHHHHHHc
Confidence 333344445544 457999999999999987532110 0 00011 112358999999999999999
Q ss_pred CCC--CCccEEEecC
Q 023515 246 VPS--ANGRYCLVER 258 (281)
Q Consensus 246 ~~~--~~g~~~~~~~ 258 (281)
++. .++.|++.+.
T Consensus 210 ~~~~~~g~~~~i~~~ 224 (236)
T 3qvo_A 210 KPEKHIGENIGINQP 224 (236)
T ss_dssp STTTTTTEEEEEECS
T ss_pred CcccccCeeEEecCC
Confidence 876 3347777653
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-26 Score=190.04 Aligned_cols=213 Identities=17% Similarity=0.120 Sum_probs=158.3
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCC--CCcCcHHHHhc---
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL--LEEGSFDSIVD--- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~--~~~~~~~~~~~--- 80 (281)
.+++|+++||||+|+||++++++|+++|++|++++|+.++...+........ ..++.++++|+ +|.++++++++
T Consensus 9 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 87 (252)
T 3f1l_A 9 LLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEET-GRQPQWFILDLLTCTSENCQQLAQRIA 87 (252)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-SCCCEEEECCTTTCCHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCCceEEEEecccCCHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999998765444333222111 13678999999 88887777765
Q ss_pred ----CCcEeEEecccCC------CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCe
Q 023515 81 ----GCDGVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDV 147 (281)
Q Consensus 81 ----~~d~Vih~a~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (281)
++|++|||||... ....+.|+..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 88 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~------- 160 (252)
T 3f1l_A 88 VNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRA------- 160 (252)
T ss_dssp HHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGTSCCT-------
T ss_pred HhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCEEEEECChhhccCCC-------
Confidence 7899999999632 12234467889999999999999996532 557999999987765221
Q ss_pred eeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhcC--CcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCC
Q 023515 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKS--IDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (281)
Q Consensus 148 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g--~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (281)
....|+.||.+.+.+++.++.+++ ++++++.||.+.++. ....... .
T Consensus 161 ---------------~~~~Y~asK~a~~~l~~~la~e~~~~irvn~v~PG~v~t~~-----------~~~~~~~-----~ 209 (252)
T 3f1l_A 161 ---------------NWGAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRTAM-----------RASAFPT-----E 209 (252)
T ss_dssp ---------------TCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECCSBSSHH-----------HHHHCTT-----C
T ss_pred ---------------CCchhHHHHHHHHHHHHHHHHHhcCCcEEEEEecCcccCch-----------hhhhCCc-----c
Confidence 124599999999999999998864 899999999997643 1111111 1
Q ss_pred CCccceeHHHHHHHHHHhhcCCC--CCcc-EEEec
Q 023515 226 VTFGWVNVKDVANAHIQAFEVPS--ANGR-YCLVE 257 (281)
Q Consensus 226 ~~~~~i~~~D~a~~i~~~~~~~~--~~g~-~~~~~ 257 (281)
....+.+++|+|+++++++.... ..|. +++.|
T Consensus 210 ~~~~~~~p~dva~~~~~L~s~~~~~itG~~i~vdg 244 (252)
T 3f1l_A 210 DPQKLKTPADIMPLYLWLMGDDSRRKTGMTFDAQP 244 (252)
T ss_dssp CGGGSBCTGGGHHHHHHHHSGGGTTCCSCEEESSC
T ss_pred chhccCCHHHHHHHHHHHcCccccCCCCCEEEeCC
Confidence 22347799999999999998653 3464 44443
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=7.8e-27 Score=190.30 Aligned_cols=188 Identities=19% Similarity=0.168 Sum_probs=145.5
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------- 80 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------- 80 (281)
++|++|||||+|+||++++++|+++|++|++++|+.++.. ....++.+|++|++++.++++
T Consensus 2 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~------------~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 69 (236)
T 1ooe_A 2 SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA------------DSNILVDGNKNWTEQEQSILEQTASSLQ 69 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS------------SEEEECCTTSCHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccccc------------cccEEEeCCCCCHHHHHHHHHHHHHHhC
Confidence 4789999999999999999999999999999999875432 135678899999988877765
Q ss_pred --CCcEeEEecccCC------CCCCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 --GCDGVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 --~~d~Vih~a~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
++|+||||||... ....+.++..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 70 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~----------- 138 (236)
T 1ooe_A 70 GSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGPTP----------- 138 (236)
T ss_dssp TCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCT-----------
T ss_pred CCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhccCCC-----------
Confidence 7899999999632 12234467889999999999999999863 235899999987764211
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHhcC-----CcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCC
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKS-----IDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g-----~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (281)
....|+.+|.+.+.+++.++.+++ +++++++||.+.++.. ... ... ..
T Consensus 139 -----------~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~-----------~~~-~~~----~~ 191 (236)
T 1ooe_A 139 -----------SMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPMN-----------RKW-MPN----AD 191 (236)
T ss_dssp -----------TBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHHH-----------HHH-STT----CC
T ss_pred -----------CcHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCcccCcch-----------hhc-CCC----cc
Confidence 124599999999999999987754 9999999999987631 111 010 11
Q ss_pred CccceeHHHHHHHHHHhhc
Q 023515 227 TFGWVNVKDVANAHIQAFE 245 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~ 245 (281)
...+++++|+|++++.++.
T Consensus 192 ~~~~~~~~dvA~~i~~~l~ 210 (236)
T 1ooe_A 192 HSSWTPLSFISEHLLKWTT 210 (236)
T ss_dssp GGGCBCHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHc
Confidence 2346789999999996663
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.4e-27 Score=191.17 Aligned_cols=204 Identities=13% Similarity=0.163 Sum_probs=146.9
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------CC
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------GC 82 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~ 82 (281)
|+++||||+|+||++++++|+++|++|++++|+.++.+.+.... ..++.++++|++|+++++++++ ++
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 75 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL-----GDNLYIAQLDVRNRAAIEEMLASLPAEWCNI 75 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CTTEEEEECCTTCHHHHHHHHHTSCTTTCCC
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----cCceEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence 57999999999999999999999999999999865433322221 1368899999999999888876 68
Q ss_pred cEeEEecccCC------CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeecCC
Q 023515 83 DGVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (281)
Q Consensus 83 d~Vih~a~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~ 153 (281)
|++|||||... ....+.|+..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 76 D~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~------------- 142 (248)
T 3asu_A 76 DILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYA------------- 142 (248)
T ss_dssp CEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCT-------------
T ss_pred CEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEccchhccCCC-------------
Confidence 99999999642 12234567899999999999999998532 457999999987654211
Q ss_pred CCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCccc-CCCCCCCCCccHHHHHHHHhCCCCCCCCCcc
Q 023515 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVI-GPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG 229 (281)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (281)
....|+.||.+.+.+++.++.++ |+++++++||.+. ++................. ....
T Consensus 143 ---------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~gT~~~~~~~~~~~~~~~~~~--------~~~~ 205 (248)
T 3asu_A 143 ---------GGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKAEKTY--------QNTV 205 (248)
T ss_dssp ---------TCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECSBCC------------------------------C
T ss_pred ---------CCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeccccccCcchhhcccCchHHHHHHH--------hccC
Confidence 12459999999999999998764 8999999999999 5642211000000000000 0122
Q ss_pred ceeHHHHHHHHHHhhcCCC
Q 023515 230 WVNVKDVANAHIQAFEVPS 248 (281)
Q Consensus 230 ~i~~~D~a~~i~~~~~~~~ 248 (281)
+++++|+|+++++++..+.
T Consensus 206 ~~~p~dvA~~v~~l~s~~~ 224 (248)
T 3asu_A 206 ALTPEDVSEAVWWVSTLPA 224 (248)
T ss_dssp CBCHHHHHHHHHHHHHSCT
T ss_pred CCCHHHHHHHHHHHhcCCc
Confidence 4699999999999998643
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.8e-27 Score=190.81 Aligned_cols=198 Identities=18% Similarity=0.166 Sum_probs=146.7
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCC----cE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGC----DG 84 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~----d~ 84 (281)
||+||||||+|+||++++++|+++|++|++++|+.++.+.+.... ..++.++.+|+++.++++++++.+ |+
T Consensus 1 Mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~ 75 (230)
T 3guy_A 1 MSLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCL-----SNNVGYRARDLASHQEVEQLFEQLDSIPST 75 (230)
T ss_dssp --CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTC-----SSCCCEEECCTTCHHHHHHHHHSCSSCCSE
T ss_pred CCEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH-----hhccCeEeecCCCHHHHHHHHHHHhhcCCE
Confidence 468999999999999999999999999999999875544333221 246889999999999999988754 99
Q ss_pred eEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCCC--ccEEEEeccceeeecCCCCCCCCeeeecCCCCCh
Q 023515 85 VCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFPS--IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDP 157 (281)
Q Consensus 85 Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~ 157 (281)
||||||... ....+.++..+++|+.++.++++++.+.+. ..++|++||..++.+.+
T Consensus 76 lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~~~~----------------- 138 (230)
T 3guy_A 76 VVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQQPKA----------------- 138 (230)
T ss_dssp EEECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGTSCCT-----------------
T ss_pred EEEeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccCCCCC-----------------
Confidence 999998632 223345678999999999999999987521 23899999987764211
Q ss_pred hhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeHH
Q 023515 158 EVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVK 234 (281)
Q Consensus 158 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 234 (281)
....|+.||++.+.+++.++.++ |+++++++||.+.++...... .. .....+++++
T Consensus 139 -----~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~-----------~~-----~~~~~~~~~~ 197 (230)
T 3guy_A 139 -----QESTYCAVKWAVKGLIESVRLELKGKPMKIIAVYPGGMATEFWETSG-----------KS-----LDTSSFMSAE 197 (230)
T ss_dssp -----TCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEECCC--------------------------------CCCHH
T ss_pred -----CCchhHHHHHHHHHHHHHHHHHHHhcCeEEEEEECCcccChHHHhcC-----------CC-----CCcccCCCHH
Confidence 12459999999999999999875 799999999999887532210 00 0123478999
Q ss_pred HHHHHHHHhhcCCCC
Q 023515 235 DVANAHIQAFEVPSA 249 (281)
Q Consensus 235 D~a~~i~~~~~~~~~ 249 (281)
|+|+++++++.++..
T Consensus 198 dvA~~i~~l~~~~~~ 212 (230)
T 3guy_A 198 DAALMIHGALANIGN 212 (230)
T ss_dssp HHHHHHHHHCCEETT
T ss_pred HHHHHHHHHHhCcCC
Confidence 999999999986543
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-26 Score=190.17 Aligned_cols=197 Identities=18% Similarity=0.164 Sum_probs=151.4
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------- 80 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------- 80 (281)
++|+|+||||+|+||++++++|+++|++|++++|+..+... ..+.+|++|.++++++++
T Consensus 21 m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~--------------~~~~~d~~d~~~v~~~~~~~~~~~g 86 (251)
T 3orf_A 21 MSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNAD--------------HSFTIKDSGEEEIKSVIEKINSKSI 86 (251)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTSS--------------EEEECSCSSHHHHHHHHHHHHTTTC
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccccc--------------cceEEEeCCHHHHHHHHHHHHHHcC
Confidence 57899999999999999999999999999999998764321 356788999988887775
Q ss_pred CCcEeEEecccCC------CCCCCccchhhhhHHHHHHHHHHHhhhCCC-ccEEEEeccceeeecCCCCCCCCeeeecCC
Q 023515 81 GCDGVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (281)
Q Consensus 81 ~~d~Vih~a~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~ 153 (281)
++|+||||||... ....+.++..+++|+.++.++++++.+.+. .++||++||..++.+.+
T Consensus 87 ~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~------------- 153 (251)
T 3orf_A 87 KVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAALNRTS------------- 153 (251)
T ss_dssp CEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCT-------------
T ss_pred CCCEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhccCCC-------------
Confidence 5699999999632 222344678899999999999999998632 35899999987765211
Q ss_pred CCChhhhccCCchhhhhHHHHHHHHHHHHHh-----cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCc
Q 023515 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKE-----KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (281)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (281)
....|+.+|.+.+.+++.++.+ .|+++++++||.+.++. ...... .....
T Consensus 154 ---------~~~~Y~~sKaa~~~~~~~la~e~~~~~~gi~v~~v~PG~v~t~~-----------~~~~~~-----~~~~~ 208 (251)
T 3orf_A 154 ---------GMIAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTPT-----------NRKYMS-----DANFD 208 (251)
T ss_dssp ---------TBHHHHHHHHHHHHHHHHHTSTTSSSCTTCEEEEEEESCBCCHH-----------HHHHCT-----TSCGG
T ss_pred ---------CCchhHHHHHHHHHHHHHHHHHhcccCCCcEEEEEecCcCcCcc-----------hhhhcc-----ccccc
Confidence 1245999999999999999887 47999999999998753 111111 12344
Q ss_pred cceeHHHHHHHHHHhhcC---CCCCc-cEEEe
Q 023515 229 GWVNVKDVANAHIQAFEV---PSANG-RYCLV 256 (281)
Q Consensus 229 ~~i~~~D~a~~i~~~~~~---~~~~g-~~~~~ 256 (281)
.+++++|+|+++++++.. ....| .+++.
T Consensus 209 ~~~~~~dva~~i~~l~~~~~~~~~tG~~i~v~ 240 (251)
T 3orf_A 209 DWTPLSEVAEKLFEWSTNSDSRPTNGSLVKFE 240 (251)
T ss_dssp GSBCHHHHHHHHHHHHHCGGGCCCTTCEEEEE
T ss_pred ccCCHHHHHHHHHHHhcCccccCCcceEEEEe
Confidence 588999999999999987 33356 45554
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-26 Score=191.11 Aligned_cols=220 Identities=15% Similarity=0.128 Sum_probs=157.2
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++|++|||||+|+||++++++|+++|++|++++|+.++...+... . ..++.++++|++|.+++.++++
T Consensus 3 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~---~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 77 (281)
T 3zv4_A 3 LTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVA---H--GGNAVGVVGDVRSLQDQKRAAERCLAAF 77 (281)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---T--BTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHH---c--CCcEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 6689999999999999999999999999999999986544333222 1 2478999999999988877765
Q ss_pred -CCcEeEEecccCCCC------C----CCccchhhhhHHHHHHHHHHHhhhCC--CccEEEEeccceeeecCCCCCCCCe
Q 023515 81 -GCDGVCHTASPFYHD------A----KDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDV 147 (281)
Q Consensus 81 -~~d~Vih~a~~~~~~------~----~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (281)
++|++|||||..... . .+.|+..+++|+.++.++++++.+.+ +.+++|++||..++.+.+
T Consensus 78 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------- 150 (281)
T 3zv4_A 78 GKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSRGSVVFTISNAGFYPNG------- 150 (281)
T ss_dssp SCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTSSSS-------
T ss_pred CCCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCeEEEEecchhccCCC-------
Confidence 689999999963211 1 12366789999999999999998752 235899999987765221
Q ss_pred eeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc--CCcEEEEcCCcccCCCCCCCCCccH-H-----HHHHHHhC
Q 023515 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK--SIDLVTINPAMVIGPLLQPTLNTSA-A-----AVLSLIKG 219 (281)
Q Consensus 148 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--g~~~~~irp~~v~g~~~~~~~~~~~-~-----~~~~~~~~ 219 (281)
....|+.||++.+.+++.++.++ .+++++|+||.+.++.......... . ........
T Consensus 151 ---------------~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (281)
T 3zv4_A 151 ---------------GGPLYTATKHAVVGLVRQMAFELAPHVRVNGVAPGGMNTDLRGPSSLGLSEQSISSVPLADMLKS 215 (281)
T ss_dssp ---------------SCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSSCC--CCCTTCC--------CCHHHHHHH
T ss_pred ---------------CCchhHHHHHHHHHHHHHHHHHhcCCCEEEEEECCcCcCCcccccccccccccccchhHHHHHHh
Confidence 12459999999999999999875 3999999999999885432111000 0 01111111
Q ss_pred CCCCCCCCccceeHHHHHHHHHHhhcCCC---CCccEEEec
Q 023515 220 AQTYPNVTFGWVNVKDVANAHIQAFEVPS---ANGRYCLVE 257 (281)
Q Consensus 220 ~~~~~~~~~~~i~~~D~a~~i~~~~~~~~---~~g~~~~~~ 257 (281)
.. ....+..++|+|+++++++..+. ..|+.+..+
T Consensus 216 ~~----p~~r~~~pedvA~~v~fL~s~~~~~~itG~~i~vd 252 (281)
T 3zv4_A 216 VL----PIGRMPALEEYTGAYVFFATRGDSLPATGALLNYD 252 (281)
T ss_dssp TC----TTSSCCCGGGGSHHHHHHHSTTTSTTCSSCEEEES
T ss_pred cC----CCCCCCCHHHHHHHHHHhhcccccccccCcEEEEC
Confidence 11 12347799999999999998332 356444433
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=99.94 E-value=8.1e-27 Score=193.66 Aligned_cols=223 Identities=16% Similarity=0.107 Sum_probs=162.5
Q ss_pred hccCCCeEEEeCCc--hHHHHHHHHHHHHCCCEEEEEEcCCCCc-ch-hhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc
Q 023515 5 AAAAGKVVCVTGAS--GYIASWLVKLLLSRGYTVKASVRDPNDP-KK-TRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (281)
Q Consensus 5 ~~~~~~~ilItGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 80 (281)
..+++|+++||||+ |+||++++++|+++|++|++++|+..+. .. +..+.... ..++.++++|++|.++++++++
T Consensus 16 ~~l~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~Dl~~~~~v~~~~~ 93 (267)
T 3gdg_A 16 LSLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTY--GIKAKAYKCQVDSYESCEKLVK 93 (267)
T ss_dssp HCCTTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHHHHHHHH--CCCEECCBCCTTCHHHHHHHHH
T ss_pred cCcCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHHHHHHhc--CCceeEEecCCCCHHHHHHHHH
Confidence 34678999999999 9999999999999999999999987654 22 22222111 2578999999999998888775
Q ss_pred -------CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCC
Q 023515 81 -------GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTP 145 (281)
Q Consensus 81 -------~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~ 145 (281)
++|+||||||.... ...+.++..+++|+.++.++++++.+.+ +.+++|++||..+..+...+
T Consensus 94 ~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~--- 170 (267)
T 3gdg_A 94 DVVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTGSLVITASMSGHIANFPQ--- 170 (267)
T ss_dssp HHHHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCSSS---
T ss_pred HHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcCCceEEEEccccccccCCCC---
Confidence 67999999996332 1334567899999999999999996532 45699999998776522100
Q ss_pred CeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhcC--CcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCC
Q 023515 146 DVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKS--IDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY 223 (281)
Q Consensus 146 ~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g--~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~ 223 (281)
....|+.+|++.+.+++.++.+++ ++++++.||.+.++..... ............
T Consensus 171 -----------------~~~~Y~~sK~a~~~~~~~la~e~~~~i~v~~v~PG~v~t~~~~~~---~~~~~~~~~~~~--- 227 (267)
T 3gdg_A 171 -----------------EQTSYNVAKAGCIHMARSLANEWRDFARVNSISPGYIDTGLSDFV---PKETQQLWHSMI--- 227 (267)
T ss_dssp -----------------CCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEECCEECSCGGGS---CHHHHHHHHTTS---
T ss_pred -----------------CCCcchHHHHHHHHHHHHHHHHhccCcEEEEEECCccccchhhhC---CHHHHHHHHhcC---
Confidence 124599999999999999998864 7899999999988763321 112222222221
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCC--CCccEEEec
Q 023515 224 PNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVE 257 (281)
Q Consensus 224 ~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~ 257 (281)
....+.+++|+|+++++++.... ..|..+..+
T Consensus 228 --~~~r~~~~~dva~~~~~l~s~~~~~itG~~i~vd 261 (267)
T 3gdg_A 228 --PMGRDGLAKELKGAYVYFASDASTYTTGADLLID 261 (267)
T ss_dssp --TTSSCEETHHHHHHHHHHHSTTCTTCCSCEEEES
T ss_pred --CCCCCcCHHHHHhHhheeecCccccccCCEEEEC
Confidence 23457899999999999997643 356444433
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-26 Score=192.28 Aligned_cols=209 Identities=13% Similarity=0.124 Sum_probs=147.7
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.|+ |++|||||+|+||++++++|+++|++|++++|+.++.+.+...... ..++.++++|++|.++++++++
T Consensus 19 ~~~-k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 94 (272)
T 2nwq_A 19 HMS-STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSA---KTRVLPLTLDVRDRAAMSAAVDNLPEE 94 (272)
T ss_dssp --C-CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTT---TSCEEEEECCTTCHHHHHHHHHTCCGG
T ss_pred CcC-cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhc---CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 344 8999999999999999999999999999999986544333222211 1368899999999999888876
Q ss_pred --CCcEeEEecccCCC------CCCCccchhhhhHHHHHHHHHHHhhhCC---Ccc-EEEEeccceeeecCCCCCCCCee
Q 023515 81 --GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIK-RVVLTSSMAAVLNTGKPRTPDVV 148 (281)
Q Consensus 81 --~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~-~~v~~SS~~~~~~~~~~~~~~~~ 148 (281)
++|+||||||.... ...+.|+..+++|+.++.++++++.+.+ +.+ +||++||..++.+.+
T Consensus 95 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS~~~~~~~~-------- 166 (272)
T 2nwq_A 95 FATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWPYP-------- 166 (272)
T ss_dssp GSSCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGTSCCT--------
T ss_pred hCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchhccCCC--------
Confidence 45999999986431 2234567899999999999999887642 346 999999987654211
Q ss_pred eecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCC
Q 023515 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (281)
Q Consensus 149 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (281)
....|+.+|.+.+.+++.++.++ |+++++++||.+.++..................
T Consensus 167 --------------~~~~Y~asKaa~~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~------- 225 (272)
T 2nwq_A 167 --------------GSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESEFSLVRFGGDQARYDKTYA------- 225 (272)
T ss_dssp --------------TCHHHHHHHHHHHHHHHHHHTTCTTSCCEEEEEEECSBC---------------------------
T ss_pred --------------CCchHHHHHHHHHHHHHHHHHHhCccCeEEEEEEcCCCcCcchhcccccchHHHHHhhc-------
Confidence 12459999999999999998764 899999999999987532110000000000000
Q ss_pred CCccceeHHHHHHHHHHhhcCCC
Q 023515 226 VTFGWVNVKDVANAHIQAFEVPS 248 (281)
Q Consensus 226 ~~~~~i~~~D~a~~i~~~~~~~~ 248 (281)
...++.++|+|+++++++..+.
T Consensus 226 -~~~~~~pedvA~~v~~l~s~~~ 247 (272)
T 2nwq_A 226 -GAHPIQPEDIAETIFWIMNQPA 247 (272)
T ss_dssp -CCCCBCHHHHHHHHHHHHTSCT
T ss_pred -cCCCCCHHHHHHHHHHHhCCCc
Confidence 1125799999999999998654
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-27 Score=200.53 Aligned_cols=220 Identities=14% Similarity=0.097 Sum_probs=158.1
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCC-CCc--chhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDP-NDP--KKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~--~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
||+|+||||||+||++++++|+++|++|++++|+. ... .....+.... ..+++++++|++|++++.++++++|+|
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~--~~~v~~v~~D~~d~~~l~~a~~~~d~v 81 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFR--SMGVTIIEGEMEEHEKMVSVLKQVDIV 81 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHH--HTTCEEEECCTTCHHHHHHHHTTCSEE
T ss_pred ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhh--cCCcEEEEecCCCHHHHHHHHcCCCEE
Confidence 56899999999999999999999999999999986 221 1111111111 136899999999999999999999999
Q ss_pred EEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCC-ccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCC
Q 023515 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSE 164 (281)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 164 (281)
||+|+... +.++.+++++|++. + +++||+ |+ +. .. .+|..+..|. .
T Consensus 82 i~~a~~~~--------------~~~~~~l~~aa~~~-g~v~~~v~-S~---~g-~~--------~~~~~~~~p~-----~ 128 (321)
T 3c1o_A 82 ISALPFPM--------------ISSQIHIINAIKAA-GNIKRFLP-SD---FG-CE--------EDRIKPLPPF-----E 128 (321)
T ss_dssp EECCCGGG--------------SGGGHHHHHHHHHH-CCCCEEEC-SC---CS-SC--------GGGCCCCHHH-----H
T ss_pred EECCCccc--------------hhhHHHHHHHHHHh-CCccEEec-cc---cc-cC--------ccccccCCCc-----c
Confidence 99997532 45678999999997 6 889983 32 21 11 1222222221 2
Q ss_pred chhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHH---HHHhCC--C--CCCCCCccceeHHHHH
Q 023515 165 LWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVL---SLIKGA--Q--TYPNVTFGWVNVKDVA 237 (281)
Q Consensus 165 ~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~---~~~~~~--~--~~~~~~~~~i~~~D~a 237 (281)
+.| .+|..+|.+++. .+++++++||+.++++.. ..... ....+. . ..++..++|++++|+|
T Consensus 129 ~~y-~sK~~~e~~~~~----~~~~~~~lrp~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva 196 (321)
T 3c1o_A 129 SVL-EKKRIIRRAIEA----AALPYTYVSANCFGAYFV-------NYLLHPSPHPNRNDDIVIYGTGETKFVLNYEEDIA 196 (321)
T ss_dssp HHH-HHHHHHHHHHHH----HTCCBEEEECCEEHHHHH-------HHHHCCCSSCCTTSCEEEETTSCCEEEEECHHHHH
T ss_pred hHH-HHHHHHHHHHHH----cCCCeEEEEeceeccccc-------cccccccccccccCceEEecCCCcceeEeeHHHHH
Confidence 359 999999998853 589999999999876421 00000 001111 1 1246778999999999
Q ss_pred HHHHHhhcCCCCCc-cEEEe--cCCCCHHHHHHHHHHhCCC
Q 023515 238 NAHIQAFEVPSANG-RYCLV--ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 238 ~~i~~~~~~~~~~g-~~~~~--~~~~t~~e~~~~i~~~~~~ 275 (281)
++++.++.++...| .|++. ++.+|+.|+++.+.+.+|.
T Consensus 197 ~~~~~~l~~~~~~g~~~~~~g~~~~~t~~e~~~~~~~~~g~ 237 (321)
T 3c1o_A 197 KYTIKVACDPRCCNRIVIYRPPKNIISQNELISLWEAKSGL 237 (321)
T ss_dssp HHHHHHHHCGGGTTEEEECCCGGGEEEHHHHHHHHHHHHTS
T ss_pred HHHHHHHhCccccCeEEEEeCCCCcccHHHHHHHHHHHcCC
Confidence 99999998875444 56665 4789999999999999875
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-26 Score=188.54 Aligned_cols=200 Identities=13% Similarity=0.086 Sum_probs=151.5
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
.++|+|+||||+|+||++++++|+++|++|++++|+.++.. ....++++|++|+++++++++
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~------------~~~~~~~~D~~~~~~v~~~~~~~~~~~ 72 (241)
T 1dhr_A 5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA------------SASVIVKMTDSFTEQADQVTAEVGKLL 72 (241)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS------------SEEEECCCCSCHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhcc------------CCcEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 45889999999999999999999999999999999875432 135678899999988887765
Q ss_pred ---CCcEeEEecccCC------CCCCCccchhhhhHHHHHHHHHHHhhhCCC-ccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 ---GCDGVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 ---~~d~Vih~a~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|+||||||... ....+.++..+++|+.++.++++++.+.+. .++||++||..++.+.+
T Consensus 73 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 142 (241)
T 1dhr_A 73 GDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGTP---------- 142 (241)
T ss_dssp TTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCT----------
T ss_pred CCCCCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHHHccCCC----------
Confidence 6899999999632 112344668899999999999999998632 36899999987764211
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc-----CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK-----SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (281)
....|+.+|.+.+.+++.++.++ |+++++++||.+.++.. ..... ..
T Consensus 143 ------------~~~~Y~asK~a~~~~~~~la~e~~~~~~gi~v~~v~PG~v~T~~~-----------~~~~~-----~~ 194 (241)
T 1dhr_A 143 ------------GMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPMN-----------RKSMP-----EA 194 (241)
T ss_dssp ------------TBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHHH-----------HHHST-----TS
T ss_pred ------------CchHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEecCcccCccc-----------cccCc-----ch
Confidence 12459999999999999998764 59999999999977531 11100 01
Q ss_pred CCccceeHHHHHHHHHHhhcCCCC--Ccc-EEEe
Q 023515 226 VTFGWVNVKDVANAHIQAFEVPSA--NGR-YCLV 256 (281)
Q Consensus 226 ~~~~~i~~~D~a~~i~~~~~~~~~--~g~-~~~~ 256 (281)
....+++++|+|+++++++..... .|. +.+.
T Consensus 195 ~~~~~~~~~~vA~~v~~l~~~~~~~~~G~~~~v~ 228 (241)
T 1dhr_A 195 DFSSWTPLEFLVETFHDWITGNKRPNSGSLIQVV 228 (241)
T ss_dssp CGGGSEEHHHHHHHHHHHHTTTTCCCTTCEEEEE
T ss_pred hhccCCCHHHHHHHHHHHhcCCCcCccceEEEEe
Confidence 223468999999999999976432 454 4443
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-26 Score=187.91 Aligned_cols=194 Identities=22% Similarity=0.157 Sum_probs=140.8
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------- 80 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------- 80 (281)
++|+|+||||+|+||++++++|+++|++|++++|+.++...+.... .++.++.+|++|.++++++++
T Consensus 4 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (234)
T 2ehd_A 4 MKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAEL------EGALPLPGDVREEGDWARAVAAMEEAFG 77 (234)
T ss_dssp CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh------hhceEEEecCCCHHHHHHHHHHHHHHcC
Confidence 3678999999999999999999999999999999764433322211 257889999999988887765
Q ss_pred CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhC---CCccEEEEeccceeeecCCCCCCCCeeeecC
Q 023515 81 GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (281)
Q Consensus 81 ~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~ 152 (281)
++|+|||+||.... ...+.++..+++|+.++.++++.+.+. .+.++||++||..++.+.+
T Consensus 78 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~------------ 145 (234)
T 2ehd_A 78 ELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGGGTIVNVGSLAGKNPFK------------ 145 (234)
T ss_dssp CCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCTTTTSCCT------------
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEECCchhcCCCC------------
Confidence 68999999986321 223456789999999998777776542 1568999999987654110
Q ss_pred CCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCcc
Q 023515 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG 229 (281)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (281)
....|+.+|.+.+.+++.++.+ .|++++++|||.+.++..... . . . ..
T Consensus 146 ----------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~--------~----~------~-~~ 196 (234)
T 2ehd_A 146 ----------GGAAYNASKFGLLGLAGAAMLDLREANVRVVNVLPGSVDTGFAGNT--------P----G------Q-AW 196 (234)
T ss_dssp ----------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEECC----------------------------------
T ss_pred ----------CCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCccccc--------c----c------c-cC
Confidence 1245999999999999988775 489999999999987642210 0 0 0 11
Q ss_pred ceeHHHHHHHHHHhhcCCC
Q 023515 230 WVNVKDVANAHIQAFEVPS 248 (281)
Q Consensus 230 ~i~~~D~a~~i~~~~~~~~ 248 (281)
+++++|+|+++++++.++.
T Consensus 197 ~~~~~dvA~~~~~l~~~~~ 215 (234)
T 2ehd_A 197 KLKPEDVAQAVLFALEMPG 215 (234)
T ss_dssp -CCHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHhCCCc
Confidence 5799999999999998654
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=191.53 Aligned_cols=226 Identities=15% Similarity=0.093 Sum_probs=146.7
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----CCcE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----GCDG 84 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~d~ 84 (281)
||+|+||||+|+||++++++|+++|++|++++|+.++... . +++|++|.++++++++ ++|+
T Consensus 1 mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~--------------~-~~~Dl~~~~~v~~~~~~~~~~id~ 65 (257)
T 1fjh_A 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIA--------------D-LSTAEGRKQAIADVLAKCSKGMDG 65 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC--------------C-TTSHHHHHHHHHHHHTTCTTCCSE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhcc--------------c-cccCCCCHHHHHHHHHHhCCCCCE
Confidence 4689999999999999999999999999999998754321 1 5689999988888886 4599
Q ss_pred eEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeecCCCCChh---
Q 023515 85 VCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPE--- 158 (281)
Q Consensus 85 Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~--- 158 (281)
||||||.... ...++..+++|+.++.++++++.+.+ +.++||++||..++.+...+......+.+.+.....
T Consensus 66 lv~~Ag~~~~--~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (257)
T 1fjh_A 66 LVLCAGLGPQ--TKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIV 143 (257)
T ss_dssp EEECCCCCTT--CSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHTCHHHHHHHH
T ss_pred EEECCCCCCC--cccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhhccccccchhhhhhcccchhhhhhhh
Confidence 9999997542 23478999999999999999998531 457999999987763211111111111111100000
Q ss_pred ---hhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCcccee
Q 023515 159 ---VCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVN 232 (281)
Q Consensus 159 ---~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 232 (281)
.+......|+.||.+.+.+++.++.+ .|+++++++||.+.++....... .......... +......+++
T Consensus 144 ~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~ 218 (257)
T 1fjh_A 144 EHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQ--DPRYGESIAK---FVPPMGRRAE 218 (257)
T ss_dssp HTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC--------------------------CCCSTTSCCC
T ss_pred hcccCCCCccHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCccchhhcc--chhHHHHHHh---cccccCCCCC
Confidence 00001245999999999999998876 58999999999999886432100 0001111110 0111234789
Q ss_pred HHHHHHHHHHhhcCCC--CCccEEEe
Q 023515 233 VKDVANAHIQAFEVPS--ANGRYCLV 256 (281)
Q Consensus 233 ~~D~a~~i~~~~~~~~--~~g~~~~~ 256 (281)
++|+|+++++++..+. ..|.++..
T Consensus 219 ~~dvA~~~~~l~~~~~~~~tG~~~~v 244 (257)
T 1fjh_A 219 PSEMASVIAFLMSPAASYVHGAQIVI 244 (257)
T ss_dssp THHHHHHHHHHTSGGGTTCCSCEEEE
T ss_pred HHHHHHHHHHHhCchhcCCcCCEEEE
Confidence 9999999999998653 34654443
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-27 Score=193.60 Aligned_cols=208 Identities=20% Similarity=0.124 Sum_probs=138.5
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcC---cHHHHhc---
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEG---SFDSIVD--- 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~---~~~~~~~--- 80 (281)
+++|++|||||+|+||++++++|++ |++|++++|+.+....+.. ..++.++.+|+++.+ .+.+.++
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 74 (245)
T 3e9n_A 3 LKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEHLAALAE-------IEGVEPIESDIVKEVLEEGGVDKLKNLD 74 (245)
T ss_dssp ---CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHHT-------STTEEEEECCHHHHHHTSSSCGGGTTCS
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHh-------hcCCcceecccchHHHHHHHHHHHHhcC
Confidence 5689999999999999999999987 9999999997654433222 136889999998763 2223332
Q ss_pred CCcEeEEecccCCCC-----CCCccchhhhhHHHHHHHHHHHhhhCC--CccEEEEeccceeeecCCCCCCCCeeeecCC
Q 023515 81 GCDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (281)
Q Consensus 81 ~~d~Vih~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~ 153 (281)
++|+||||||..... ..+.++..+++|+.++.++++++.+.+ ..+++|++||..++.+.+
T Consensus 75 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~------------- 141 (245)
T 3e9n_A 75 HVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAASGCVIYINSGAGNGPHP------------- 141 (245)
T ss_dssp CCSEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEC----------------------
T ss_pred CCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEcCcccccCCC-------------
Confidence 789999999963321 233466889999999999999987642 126899999987765211
Q ss_pred CCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccc
Q 023515 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGW 230 (281)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (281)
....|+.||.+.+.+++.++.+ .|+++++++||.+.++....... .... ......+
T Consensus 142 ---------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~-------~~~~-----~~~~~~~ 200 (245)
T 3e9n_A 142 ---------GNTIYAASKHALRGLADAFRKEEANNGIRVSTVSPGPTNTPMLQGLMD-------SQGT-----NFRPEIY 200 (245)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC----------------------------CCGGG
T ss_pred ---------CchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCccCchhhhhhh-------hhhc-----ccccccC
Confidence 1245999999999999999886 48999999999999876332110 0000 0122457
Q ss_pred eeHHHHHHHHHHhhcCCCCCccEEEe
Q 023515 231 VNVKDVANAHIQAFEVPSANGRYCLV 256 (281)
Q Consensus 231 i~~~D~a~~i~~~~~~~~~~g~~~~~ 256 (281)
++++|+|++++++++.+...++|++.
T Consensus 201 ~~p~dvA~~i~~l~~~~~~~~~~~i~ 226 (245)
T 3e9n_A 201 IEPKEIANAIRFVIDAGETTQITNVD 226 (245)
T ss_dssp SCHHHHHHHHHHHHTSCTTEEEEEEE
T ss_pred CCHHHHHHHHHHHHcCCCccceeeeE
Confidence 89999999999999988766677654
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=7.4e-26 Score=185.94 Aligned_cols=210 Identities=12% Similarity=0.059 Sum_probs=151.0
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---CC
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---GC 82 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---~~ 82 (281)
.+++|+|+||||+|+||++++++|+++|++|++++|+.+ .+..+ ..+.++ +|+ .++++++++ ++
T Consensus 16 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~---~~~~~-------~~~~~~-~D~--~~~~~~~~~~~~~i 82 (249)
T 1o5i_A 16 GIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEE---LLKRS-------GHRYVV-CDL--RKDLDLLFEKVKEV 82 (249)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH---HHHHT-------CSEEEE-CCT--TTCHHHHHHHSCCC
T ss_pred ccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHH---HHHhh-------CCeEEE-eeH--HHHHHHHHHHhcCC
Confidence 457899999999999999999999999999999999762 11111 246667 999 455666554 78
Q ss_pred cEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeecCCC
Q 023515 83 DGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWF 154 (281)
Q Consensus 83 d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~ 154 (281)
|+||||||.... ...+.++..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 83 D~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------------- 148 (249)
T 1o5i_A 83 DILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISPIE-------------- 148 (249)
T ss_dssp SEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT--------------
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchHhcCCCC--------------
Confidence 999999986322 2334567899999999998877776532 457999999987764211
Q ss_pred CChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHH-HHHhCCCCCCCCCccc
Q 023515 155 SDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVL-SLIKGAQTYPNVTFGW 230 (281)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 230 (281)
....|+.+|.+.+.+++.++.+ .|+++++++||.++++....... .... ...... ....+
T Consensus 149 --------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~---~~~~~~~~~~~-----p~~~~ 212 (249)
T 1o5i_A 149 --------NLYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKELLS---EEKKKQVESQI-----PMRRM 212 (249)
T ss_dssp --------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHHSC---HHHHHHHHTTS-----TTSSC
T ss_pred --------CCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCccCcccccch---hhHHHHHHhcC-----CCCCC
Confidence 1245999999999999998876 48999999999999986321000 1111 222211 12358
Q ss_pred eeHHHHHHHHHHhhcCCC--CCc-cEEEecC
Q 023515 231 VNVKDVANAHIQAFEVPS--ANG-RYCLVER 258 (281)
Q Consensus 231 i~~~D~a~~i~~~~~~~~--~~g-~~~~~~~ 258 (281)
++++|+|+++++++.... ..| .+++.|+
T Consensus 213 ~~~~dvA~~i~~l~s~~~~~~tG~~~~vdgG 243 (249)
T 1o5i_A 213 AKPEEIASVVAFLCSEKASYLTGQTIVVDGG 243 (249)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cCHHHHHHHHHHHcCccccCCCCCEEEECCC
Confidence 899999999999997543 246 4555544
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-25 Score=191.87 Aligned_cols=215 Identities=15% Similarity=0.182 Sum_probs=157.7
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhh----hhh-hccCCCCcEEEEEcCCCCcCcHHHHhc
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTR----HLL-ALDGASERLQLFKANLLEEGSFDSIVD 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~----~~~-~~~~~~~~~~~~~~D~~~~~~~~~~~~ 80 (281)
.+++|+||||||+|+||++++++|+++|++|++++|+.++.+.+. ... .......++.++++|++|.++++++++
T Consensus 42 ~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~ 121 (346)
T 3kvo_A 42 RLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAVE 121 (346)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHH
Confidence 456899999999999999999999999999999999877543321 110 011112578999999999998888776
Q ss_pred -------CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCC
Q 023515 81 -------GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTP 145 (281)
Q Consensus 81 -------~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~ 145 (281)
++|+||||||... ....+.|+..+++|+.++.++++++.+.+ +.++||++||..++.+...
T Consensus 122 ~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~~~~~~~---- 197 (346)
T 3kvo_A 122 KAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNPVWF---- 197 (346)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCCCCGGGT----
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHHcCCCCC----
Confidence 7999999999632 22234567899999999999999997642 4579999999876542100
Q ss_pred CeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc--CCcEEEEcCCc-ccCCCCCCCCCccHHHHHHHHhCCCC
Q 023515 146 DVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK--SIDLVTINPAM-VIGPLLQPTLNTSAAAVLSLIKGAQT 222 (281)
Q Consensus 146 ~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--g~~~~~irp~~-v~g~~~~~~~~~~~~~~~~~~~~~~~ 222 (281)
.....|+.+|.+.+.+++.++.++ |+++++|.||. +.++. .. ...+.
T Consensus 198 ----------------~~~~~Y~aSKaal~~l~~~la~e~~~gIrvn~v~PG~~i~T~~-----------~~-~~~~~-- 247 (346)
T 3kvo_A 198 ----------------KQHCAYTIAKYGMSMYVLGMAEEFKGEIAVNALWPKTAIHTAA-----------MD-MLGGP-- 247 (346)
T ss_dssp ----------------SSSHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECSBCBCCHH-----------HH-HHCC---
T ss_pred ----------------CCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCccccHH-----------HH-hhccc--
Confidence 012459999999999999999885 79999999995 54321 11 11111
Q ss_pred CCCCCccceeHHHHHHHHHHhhcCCC-CCccEEEe
Q 023515 223 YPNVTFGWVNVKDVANAHIQAFEVPS-ANGRYCLV 256 (281)
Q Consensus 223 ~~~~~~~~i~~~D~a~~i~~~~~~~~-~~g~~~~~ 256 (281)
.....+..++|+|+++++++.... ..|.+++.
T Consensus 248 --~~~~r~~~pedvA~~v~~L~s~~~~itG~~ivd 280 (346)
T 3kvo_A 248 --GIESQCRKVDIIADAAYSIFQKPKSFTGNFVID 280 (346)
T ss_dssp ---CGGGCBCTHHHHHHHHHHHTSCTTCCSCEEEH
T ss_pred --cccccCCCHHHHHHHHHHHHhcCCCCCceEEEC
Confidence 112346799999999999998722 25666543
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.6e-26 Score=189.26 Aligned_cols=213 Identities=15% Similarity=0.163 Sum_probs=155.7
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhh----hhhh-ccCCCCcEEEEEcCCCCcCcHHHHhc-
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTR----HLLA-LDGASERLQLFKANLLEEGSFDSIVD- 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~----~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~- 80 (281)
+++|+++||||+|+||++++++|+++|++|++++|+.++.+.+. .... ......++.++++|++|.++++++++
T Consensus 4 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 83 (274)
T 3e03_A 4 LSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVAA 83 (274)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH
Confidence 67899999999999999999999999999999999876533221 1110 01112578999999999998888775
Q ss_pred ------CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCC
Q 023515 81 ------GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPD 146 (281)
Q Consensus 81 ------~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~ 146 (281)
++|++|||||... ....+.|+..+++|+.++.++++++.+.+ +.+++|++||..++.+..
T Consensus 84 ~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~------ 157 (274)
T 3e03_A 84 TVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPAW------ 157 (274)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCCCCHHH------
T ss_pred HHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHhcCCCC------
Confidence 7899999999632 22334567899999999999999998742 457899999987654200
Q ss_pred eeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCc-ccCCCCCCCCCccHHHHHHHHhCCCC
Q 023515 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAM-VIGPLLQPTLNTSAAAVLSLIKGAQT 222 (281)
Q Consensus 147 ~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~-v~g~~~~~~~~~~~~~~~~~~~~~~~ 222 (281)
......|+.||.+.+.+++.++.++ |+++++++||. +.++... ....
T Consensus 158 --------------~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~~v~T~~~~------------~~~~--- 208 (274)
T 3e03_A 158 --------------WGAHTGYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRTVIATDAIN------------MLPG--- 208 (274)
T ss_dssp --------------HHHCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECSBCBCC-------------------C---
T ss_pred --------------CCCCchHHHHHHHHHHHHHHHHHHhhhcCEEEEEEECCcccccchhh------------hccc---
Confidence 0012459999999999999998864 89999999994 5554310 1111
Q ss_pred CCCCCccceeHHHHHHHHHHhhcCCCC--CccEEEe
Q 023515 223 YPNVTFGWVNVKDVANAHIQAFEVPSA--NGRYCLV 256 (281)
Q Consensus 223 ~~~~~~~~i~~~D~a~~i~~~~~~~~~--~g~~~~~ 256 (281)
.....+..++|+|+++++++..... .|+++..
T Consensus 209 --~~~~~~~~pedvA~~v~~l~s~~~~~itG~~i~~ 242 (274)
T 3e03_A 209 --VDAAACRRPEIMADAAHAVLTREAAGFHGQFLID 242 (274)
T ss_dssp --CCGGGSBCTHHHHHHHHHHHTSCCTTCCSCEEEH
T ss_pred --ccccccCCHHHHHHHHHHHhCccccccCCeEEEc
Confidence 1123377999999999999986543 5666543
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=9.4e-26 Score=185.09 Aligned_cols=203 Identities=16% Similarity=0.143 Sum_probs=152.1
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCC--CCcCcHHHHhc---
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL--LEEGSFDSIVD--- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~--~~~~~~~~~~~--- 80 (281)
.+++|+++||||+|+||++++++|+++|++|++++|+.++.+.+.+...... ..+..++.+|+ ++.+++.++++
T Consensus 11 ~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~d~d~~~~~~~~~~~~~~~ 89 (247)
T 3i1j_A 11 LLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAG-QPQPLIIALNLENATAQQYRELAARVE 89 (247)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-SCCCEEEECCTTTCCHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC-CCCceEEEeccccCCHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999998765554443332221 13567777777 78777777665
Q ss_pred ----CCcEeEEecccCCC------CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCe
Q 023515 81 ----GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDV 147 (281)
Q Consensus 81 ----~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (281)
++|+||||||.... ...+.++..+++|+.++.++++++.+.+ +.+++|++||..+..+.+
T Consensus 90 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~------- 162 (247)
T 3i1j_A 90 HEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGRKGRA------- 162 (247)
T ss_dssp HHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECCGGGTSCCT-------
T ss_pred HhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcchhhcCCCC-------
Confidence 78999999996321 2335567899999999999999996532 457899999987654211
Q ss_pred eeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh----cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCC
Q 023515 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE----KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY 223 (281)
Q Consensus 148 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~ 223 (281)
....|+.+|++.+.+++.++.+ .++++++++||.+.++. .......
T Consensus 163 ---------------~~~~Y~~sK~a~~~~~~~la~e~~~~~~i~v~~v~PG~v~t~~-----------~~~~~~~---- 212 (247)
T 3i1j_A 163 ---------------NWGAYGVSKFATEGLMQTLADELEGVTAVRANSINPGATRTGM-----------RAQAYPD---- 212 (247)
T ss_dssp ---------------TCHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEECCCCSSHH-----------HHHHSTT----
T ss_pred ---------------CcchhHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCcccCcc-----------chhcccc----
Confidence 1245999999999999999876 37899999999997643 1111111
Q ss_pred CCCCccceeHHHHHHHHHHhhcCC
Q 023515 224 PNVTFGWVNVKDVANAHIQAFEVP 247 (281)
Q Consensus 224 ~~~~~~~i~~~D~a~~i~~~~~~~ 247 (281)
.....+..++|+|+++++++...
T Consensus 213 -~~~~~~~~p~dva~~~~~l~s~~ 235 (247)
T 3i1j_A 213 -ENPLNNPAPEDIMPVYLYLMGPD 235 (247)
T ss_dssp -SCGGGSCCGGGGTHHHHHHHSGG
T ss_pred -cCccCCCCHHHHHHHHHHHhCch
Confidence 12234678999999999999754
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.8e-26 Score=187.03 Aligned_cols=221 Identities=16% Similarity=0.126 Sum_probs=152.5
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++|+++||||+|+||++++++|+++|++|++++|+.++...+....... ..++.++++|++|+++++++++
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (260)
T 2qq5_A 3 MNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSL--GGQCVPVVCDSSQESEVRSLFEQVDREQ 80 (260)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH--SSEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHc--CCceEEEECCCCCHHHHHHHHHHHHHhc
Confidence 56899999999999999999999999999999999865443332222111 2468899999999988777654
Q ss_pred --CCcEeEEecc--cC----------CCCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCC
Q 023515 81 --GCDGVCHTAS--PF----------YHDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPR 143 (281)
Q Consensus 81 --~~d~Vih~a~--~~----------~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~ 143 (281)
++|++||||| .. .....+.|+..+++|+.++.++.+++.+.+ +.++||++||..++.+.
T Consensus 81 ~g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---- 156 (260)
T 2qq5_A 81 QGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSLQYM---- 156 (260)
T ss_dssp TTCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGTCCEEEEECCGGGTSCC----
T ss_pred CCCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcCCcEEEEEcChhhcCCC----
Confidence 4799999994 21 123345677899999999999888876532 45799999998664311
Q ss_pred CCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC
Q 023515 144 TPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA 220 (281)
Q Consensus 144 ~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~ 220 (281)
+...|+.||.+.+.+++.++.+ +|+++++++||.+.++...................
T Consensus 157 -------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~- 216 (260)
T 2qq5_A 157 -------------------FNVPYGVGKAACDKLAADCAHELRRHGVSCVSLWPGIVQTELLKEHMAKEEVLQDPVLKQ- 216 (260)
T ss_dssp -------------------SSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCCSCTTTC------------------
T ss_pred -------------------CCCchHHHHHHHHHHHHHHHHHhccCCeEEEEEecCccccHHHHHhhccccccchhHHHH-
Confidence 1235999999999999999875 48999999999999886332110000000000000
Q ss_pred CCCCCCCccceeHHHHHHHHHHhhcCCCC---CccEEE
Q 023515 221 QTYPNVTFGWVNVKDVANAHIQAFEVPSA---NGRYCL 255 (281)
Q Consensus 221 ~~~~~~~~~~i~~~D~a~~i~~~~~~~~~---~g~~~~ 255 (281)
.......+..++|+|+++++++..... .|.++.
T Consensus 217 --~~~~~~~~~~pe~va~~v~~l~s~~~~~~itG~~i~ 252 (260)
T 2qq5_A 217 --FKSAFSSAETTELSGKCVVALATDPNILSLSGKVLP 252 (260)
T ss_dssp -------CHHHHHHHHHHHHHHHHTCTTGGGGTTCEEE
T ss_pred --HHhhhccCCCHHHHHHHHHHHhcCcccccccceeec
Confidence 000011246899999999999987542 565544
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-26 Score=190.98 Aligned_cols=213 Identities=16% Similarity=0.090 Sum_probs=153.0
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHH---CCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLS---RGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~---~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
+++|+++||||+|+||++++++|++ +|++|++++|+.++.+.+...........++.++++|++|+++++++++
T Consensus 4 l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 83 (259)
T 1oaa_A 4 LGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVR 83 (259)
T ss_dssp CBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHH
Confidence 5688999999999999999999999 8999999999865444333222111112468999999999988877664
Q ss_pred ------CCc--EeEEecccCCC--------CCCCccchhhhhHHHHHHHHHHHhhhCC-----CccEEEEeccceeeecC
Q 023515 81 ------GCD--GVCHTASPFYH--------DAKDPQVELLDPAVKGTLNVLNSCAKFP-----SIKRVVLTSSMAAVLNT 139 (281)
Q Consensus 81 ------~~d--~Vih~a~~~~~--------~~~~~~~~~~~~n~~~~~~l~~~~~~~~-----~~~~~v~~SS~~~~~~~ 139 (281)
++| +||||||.... ...+.|+..+++|+.++.++++++.+.+ +.++||++||..++.+.
T Consensus 84 ~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~~~~~ 163 (259)
T 1oaa_A 84 ELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQPY 163 (259)
T ss_dssp HSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTSCC
T ss_pred hccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchhcCCC
Confidence 358 99999996432 2335577899999999999999999864 23579999998775421
Q ss_pred CCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc-CCcEEEEcCCcccCCCCCCCCC--ccHHHHHHH
Q 023515 140 GKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK-SIDLVTINPAMVIGPLLQPTLN--TSAAAVLSL 216 (281)
Q Consensus 140 ~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-g~~~~~irp~~v~g~~~~~~~~--~~~~~~~~~ 216 (281)
+ ....|+.||.+.+.+++.++.++ ++++++++||.+.++....... .........
T Consensus 164 ~----------------------~~~~Y~asKaa~~~~~~~la~e~~~i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~ 221 (259)
T 1oaa_A 164 K----------------------GWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDNDMQQLARETSKDPELRSKL 221 (259)
T ss_dssp T----------------------TCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSHHHHHHHHHCSCHHHHHHH
T ss_pred C----------------------CccHHHHHHHHHHHHHHHHHhhCCCceEEEecCCCcCcchHHHHhhccCChhHHHHH
Confidence 1 12459999999999999999886 5899999999997753110000 000111111
Q ss_pred HhCCCCCCCCCccceeHHHHHHHHHHhhcC
Q 023515 217 IKGAQTYPNVTFGWVNVKDVANAHIQAFEV 246 (281)
Q Consensus 217 ~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~ 246 (281)
.... ....+.+++|+|+++++++..
T Consensus 222 ~~~~-----p~~~~~~p~dvA~~v~~l~~~ 246 (259)
T 1oaa_A 222 QKLK-----SDGALVDCGTSAQKLLGLLQK 246 (259)
T ss_dssp HHHH-----HTTCSBCHHHHHHHHHHHHHH
T ss_pred HHhh-----hcCCcCCHHHHHHHHHHHHhh
Confidence 1100 022378999999999999974
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.2e-26 Score=186.61 Aligned_cols=213 Identities=12% Similarity=0.011 Sum_probs=148.1
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------C
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------G 81 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~ 81 (281)
||+++||||+|+||++++++|+++|++|++++|+.++.+.+..+... . .++.++ |.++++++++ +
T Consensus 1 Mk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~-~--~~~~~~-----d~~~v~~~~~~~~~~~g~ 72 (254)
T 1zmt_A 1 MSTAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAET-Y--PQLKPM-----SEQEPAELIEAVTSAYGQ 72 (254)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHH-C--TTSEEC-----CCCSHHHHHHHHHHHHSC
T ss_pred CeEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-C--CcEEEE-----CHHHHHHHHHHHHHHhCC
Confidence 46899999999999999999999999999999987665443332111 1 233333 5555655554 7
Q ss_pred CcEeEEecccC-C-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeecC
Q 023515 82 CDGVCHTASPF-Y-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (281)
Q Consensus 82 ~d~Vih~a~~~-~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~ 152 (281)
+|+||||||.. . ....+.++..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 73 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------ 140 (254)
T 1zmt_A 73 VDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPWK------------ 140 (254)
T ss_dssp CCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTSCCT------------
T ss_pred CCEEEECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCcccccCCC------------
Confidence 89999999965 2 12234567899999999999999997642 357999999987654211
Q ss_pred CCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCc-----cHHHHHHHHhCCCCCC
Q 023515 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNT-----SAAAVLSLIKGAQTYP 224 (281)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~-----~~~~~~~~~~~~~~~~ 224 (281)
....|+.||.+.+.+++.++.++ |+++++++||.++||........ ............
T Consensus 141 ----------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~~~~~~~~~~T~~~~~~~~~~~~~~~~~---- 206 (254)
T 1zmt_A 141 ----------ELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVT---- 206 (254)
T ss_dssp ----------TCHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHHS----
T ss_pred ----------CchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCccccccccccCCCcccccChHHHHHHhccC----
Confidence 12459999999999999998764 89999999999987753322111 011111111111
Q ss_pred CCCccceeHHHHHHHHHHhhcCCCC--CccEEEe
Q 023515 225 NVTFGWVNVKDVANAHIQAFEVPSA--NGRYCLV 256 (281)
Q Consensus 225 ~~~~~~i~~~D~a~~i~~~~~~~~~--~g~~~~~ 256 (281)
....+.+++|+|+++++++..... .|.++..
T Consensus 207 -p~~~~~~p~dvA~~v~~l~s~~~~~~tG~~~~v 239 (254)
T 1zmt_A 207 -ALQRLGTQKELGELVAFLASGSCDYLTGQVFWL 239 (254)
T ss_dssp -SSSSCBCHHHHHHHHHHHHTTSCGGGTTCEEEE
T ss_pred -CCCCCcCHHHHHHHHHHHhCcccCCccCCEEEE
Confidence 122378999999999999986542 5644443
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-25 Score=188.69 Aligned_cols=205 Identities=16% Similarity=0.079 Sum_probs=152.3
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
++++|+|+||||+|+||++++++|+++|++|++++|+.++.+.+.......+ ..++.++.+|++|.++++++++
T Consensus 25 ~~~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 103 (286)
T 1xu9_A 25 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELG-AASAHYIAGTMEDMTFAEQFVAQAGKL 103 (286)
T ss_dssp GGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT-CSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999998655443332221111 1368899999999988887765
Q ss_pred --CCcEeEEe-cccCCC----CCCCccchhhhhHHHHHHHHHHHhhhCC--CccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 --GCDGVCHT-ASPFYH----DAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 --~~d~Vih~-a~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
++|+|||| |+.... ...+.++..+++|+.|+.++++++.+.+ +.++||++||..++.+.+
T Consensus 104 ~g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~----------- 172 (286)
T 1xu9_A 104 MGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYP----------- 172 (286)
T ss_dssp HTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTSCCT-----------
T ss_pred cCCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCCCEEEEECCcccccCCC-----------
Confidence 78999999 564321 1223456789999999999999998742 236999999987654211
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc-----CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCC
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK-----SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (281)
....|+.||.+.+.+++.++.++ ++++++++||.+.++.. .....+ ..
T Consensus 173 -----------~~~~Y~asK~a~~~~~~~l~~e~~~~~~~i~v~~v~Pg~v~t~~~-----------~~~~~~-----~~ 225 (286)
T 1xu9_A 173 -----------MVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETA-----------MKAVSG-----IV 225 (286)
T ss_dssp -----------TCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHHH-----------HHHSCG-----GG
T ss_pred -----------CccHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeecCccCChhH-----------HHhccc-----cc
Confidence 12459999999999999887764 89999999999977531 111011 11
Q ss_pred CccceeHHHHHHHHHHhhcCCCC
Q 023515 227 TFGWVNVKDVANAHIQAFEVPSA 249 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~~ 249 (281)
...+++++|+|+.++.++..+..
T Consensus 226 ~~~~~~~~~vA~~i~~~~~~~~~ 248 (286)
T 1xu9_A 226 HMQAAPKEECALEIIKGGALRQE 248 (286)
T ss_dssp GGGCBCHHHHHHHHHHHHHTTCS
T ss_pred cCCCCCHHHHHHHHHHHHhcCCc
Confidence 23478999999999999986543
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-26 Score=190.22 Aligned_cols=220 Identities=12% Similarity=0.082 Sum_probs=156.0
Q ss_pred ccCCCeEEEeCC--chHHHHHHHHHHHHCCCEEEEEEcCCCCc-chhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--
Q 023515 6 AAAGKVVCVTGA--SGYIASWLVKLLLSRGYTVKASVRDPNDP-KKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-- 80 (281)
Q Consensus 6 ~~~~~~ilItGa--tG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-- 80 (281)
.+++|+++|||| +|+||++++++|+++|++|++++|+..+. +.+... . ..++.++++|++|+++++++++
T Consensus 4 ~l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~~Dv~~~~~v~~~~~~~ 78 (269)
T 2h7i_A 4 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDR---L--PAKAPLLELDVQNEEHLASLAGRV 78 (269)
T ss_dssp TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTT---S--SSCCCEEECCTTCHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHHh---c--CCCceEEEccCCCHHHHHHHHHHH
Confidence 466899999999 99999999999999999999999976431 222111 1 2357889999999998888776
Q ss_pred --------CCcEeEEecccCC----------CCCCCccchhhhhHHHHHHHHHHHhhhCCC-ccEEEEeccceeeecCCC
Q 023515 81 --------GCDGVCHTASPFY----------HDAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAVLNTGK 141 (281)
Q Consensus 81 --------~~d~Vih~a~~~~----------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~ 141 (281)
++|+||||||... ....+.|+..+++|+.++.++++++.+.+. .++||++||..... .+
T Consensus 79 ~~~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss~~~~~-~~- 156 (269)
T 2h7i_A 79 TEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRA-MP- 156 (269)
T ss_dssp HHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSSC-CT-
T ss_pred HHHhCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcCccccc-cC-
Confidence 7899999999643 122344668899999999999999998632 36899999965421 10
Q ss_pred CCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCC----CCcc-HH--
Q 023515 142 PRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPT----LNTS-AA-- 211 (281)
Q Consensus 142 ~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~----~~~~-~~-- 211 (281)
....|+.+|.+.+.+++.++.++ |+++++++||.+.++..... .... ..
T Consensus 157 ---------------------~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~ 215 (269)
T 2h7i_A 157 ---------------------AYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQI 215 (269)
T ss_dssp ---------------------TTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHH
T ss_pred ---------------------chHHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccchhhhccccccchhhHHHHH
Confidence 12459999999999999988764 89999999999987632100 0000 00
Q ss_pred --HHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCccEEEec
Q 023515 212 --AVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVE 257 (281)
Q Consensus 212 --~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~ 257 (281)
.........| . .+.+..++|+|+++++++.... ..|..+..+
T Consensus 216 ~~~~~~~~~~~p-~---~rr~~~p~dvA~~v~~L~s~~~~~itG~~i~vd 261 (269)
T 2h7i_A 216 QLLEEGWDQRAP-I---GWNMKDATPVAKTVCALLSDWLPATTGDIIYAD 261 (269)
T ss_dssp HHHHHHHHHHCT-T---CCCTTCCHHHHHHHHHHHSSSCTTCCSEEEEES
T ss_pred HHHHHhhhccCC-c---ccCCCCHHHHHHHHHHHhCchhccCcceEEEec
Confidence 0111111111 1 1136789999999999998543 256554443
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-25 Score=189.82 Aligned_cols=222 Identities=19% Similarity=0.152 Sum_probs=153.8
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhc----cCCCCcEEEEEcCCCCcCcHHHHhcC---
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLAL----DGASERLQLFKANLLEEGSFDSIVDG--- 81 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~~~D~~~~~~~~~~~~~--- 81 (281)
+|+|+||||+|+||++++++|+++|++|++++|+..+......+... .....++.++++|++|.+++.++++.
T Consensus 2 ~k~vlVTGas~GIG~ala~~L~~~G~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 81 (327)
T 1jtv_A 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE 81 (327)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHHhc
Confidence 67899999999999999999999999999988876554443332211 11124689999999999999988874
Q ss_pred --CcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 82 --CDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 82 --~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
+|+||||||... ....+.++..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 82 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~~g~IV~isS~~~~~~~~----------- 150 (327)
T 1jtv_A 82 GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLP----------- 150 (327)
T ss_dssp SCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTSCCT-----------
T ss_pred CCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCcccccCCC-----------
Confidence 899999998632 12334567899999999999999986532 467999999987764211
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccH-----------HHHHHHH
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSA-----------AAVLSLI 217 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~-----------~~~~~~~ 217 (281)
....|+.||++.+.+++.++.+ .|+++++|+||.|.++.......... ..+....
T Consensus 151 -----------~~~~Y~aSK~a~~~~~~~la~el~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (327)
T 1jtv_A 151 -----------FNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTFHRFYQYL 219 (327)
T ss_dssp -----------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC-------CCHHHHHHTSCHHHHHHHHHHH
T ss_pred -----------CChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCcccChHHhhhhhcchhhhccCCHHHHHHHHHHH
Confidence 1245999999999999999875 58999999999999886432111100 0011110
Q ss_pred hCCCCCCCCCccceeHHHHHHHHHHhhcCCCCCccEE
Q 023515 218 KGAQTYPNVTFGWVNVKDVANAHIQAFEVPSANGRYC 254 (281)
Q Consensus 218 ~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~~~g~~~ 254 (281)
.... ....+-.+.++|+|+++++++..+.....|.
T Consensus 220 ~~~~--~~~~~~~~~pedvA~~i~~l~~~~~~~~~~~ 254 (327)
T 1jtv_A 220 AHSK--QVFREAAQNPEEVAEVFLTALRAPKPTLRYF 254 (327)
T ss_dssp HHHH--HHHHHHCBCHHHHHHHHHHHHHCSSCCSEEE
T ss_pred HHHH--HhhhhcCCCHHHHHHHHHHHHcCCCCCeEEE
Confidence 0000 0000112589999999999998765444444
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=4.8e-25 Score=186.70 Aligned_cols=226 Identities=17% Similarity=0.143 Sum_probs=154.7
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCc-CcHHHHhc----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEE-GSFDSIVD---- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~---- 80 (281)
++++|+||||||+|+||++++++|+++|++|++++|+..+........... ...++.++++|++|. +.++.+++
T Consensus 9 ~~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~Dl~~~~~~v~~~~~~~~~ 87 (311)
T 3o26_A 9 VTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNS-NHENVVFHQLDVTDPIATMSSLADFIKT 87 (311)
T ss_dssp ---CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT-TCCSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cCCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCCceEEEEccCCCcHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999876544433322221 124799999999998 77766654
Q ss_pred ---CCcEeEEecccCCC-----------------------------------CCCCccchhhhhHHHHHHHHHHHhhhCC
Q 023515 81 ---GCDGVCHTASPFYH-----------------------------------DAKDPQVELLDPAVKGTLNVLNSCAKFP 122 (281)
Q Consensus 81 ---~~d~Vih~a~~~~~-----------------------------------~~~~~~~~~~~~n~~~~~~l~~~~~~~~ 122 (281)
++|+||||||.... ...+.++..+++|+.|+.++++++.+.+
T Consensus 88 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l 167 (311)
T 3o26_A 88 HFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLL 167 (311)
T ss_dssp HHSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred hCCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHHhhHhh
Confidence 79999999997531 1223345679999999999999987642
Q ss_pred ---CccEEEEeccceeeecCCCCCCCCeee-ecCCC--------------------CChhhhccCCchhhhhHHHHHHHH
Q 023515 123 ---SIKRVVLTSSMAAVLNTGKPRTPDVVV-DETWF--------------------SDPEVCKQSELWYPLSKTLAEDAA 178 (281)
Q Consensus 123 ---~~~~~v~~SS~~~~~~~~~~~~~~~~~-~e~~~--------------------~~~~~~~~~~~~Y~~sK~~~e~~~ 178 (281)
+.++||++||..+..+..........+ +++.+ ............|+.||++.+.++
T Consensus 168 ~~~~~~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~ 247 (311)
T 3o26_A 168 QLSDSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSKACLNAYT 247 (311)
T ss_dssp TTSSSCEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTCTTTTTCCSSCHHHHHHHHHHHHHH
T ss_pred ccCCCCeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhccccccccCcccchhhHHHHHHHHHHH
Confidence 457999999987765321000000000 00000 000000012345999999999999
Q ss_pred HHHHHhc-CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCCC--CccEEE
Q 023515 179 WKFAKEK-SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPSA--NGRYCL 255 (281)
Q Consensus 179 ~~~~~~~-g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~~--~g~~~~ 255 (281)
+.++.++ ++++++++||.|.++.... .....+++.++.++.++..+.. .|.|+.
T Consensus 248 ~~la~e~~~i~v~~v~PG~v~T~~~~~-----------------------~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~ 304 (311)
T 3o26_A 248 RVLANKIPKFQVNCVCPGLVKTEMNYG-----------------------IGNYTAEEGAEHVVRIALFPDDGPSGFFYD 304 (311)
T ss_dssp HHHHHHCTTSEEEEECCCSBCSGGGTT-----------------------CCSBCHHHHHHHHHHHHTCCSSCCCSCEET
T ss_pred HHHHhhcCCceEEEecCCceecCCcCC-----------------------CCCCCHHHHHHHHHHHHhCCCCCCCceEec
Confidence 9999886 7999999999998865221 1135789999999988876543 445543
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-24 Score=191.13 Aligned_cols=215 Identities=19% Similarity=0.120 Sum_probs=154.5
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++++++||||+|+||+++++.|+++|++|++++|+... +.+...... .++.++.+|++|.++++++++
T Consensus 211 l~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~~~-~~l~~~~~~----~~~~~~~~Dvtd~~~v~~~~~~~~~~~ 285 (454)
T 3u0b_A 211 LDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGAA-EDLKRVADK----VGGTALTLDVTADDAVDKITAHVTEHH 285 (454)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGGGH-HHHHHHHHH----HTCEEEECCTTSTTHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCccH-HHHHHHHHH----cCCeEEEEecCCHHHHHHHHHHHHHHc
Confidence 468999999999999999999999999999999986432 222222111 146789999999999888775
Q ss_pred -C-CcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 -G-CDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 -~-~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
+ +|+||||||.... ...+.|+..+++|+.|+.++.+++.+.+ +..+||++||..++.+.+
T Consensus 286 g~~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS~a~~~g~~---------- 355 (454)
T 3u0b_A 286 GGKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGIAGNR---------- 355 (454)
T ss_dssp TTCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECCHHHHHCCT----------
T ss_pred CCCceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeChHhCCCCC----------
Confidence 3 9999999997432 2345577899999999999999999763 456899999998876432
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
.+..|+.+|.+.+.+++.++.+ .|+++++|+||.+.++....... ......... ...
T Consensus 356 ------------g~~~YaasKaal~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~----~~~~~~~~~----~~l 415 (454)
T 3u0b_A 356 ------------GQTNYATTKAGMIGLAEALAPVLADKGITINAVAPGFIETKMTEAIPL----ATREVGRRL----NSL 415 (454)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECSBCC--------------CHHHHHS----BTT
T ss_pred ------------CCHHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEcCcccChhhhhcch----hhHHHHHhh----ccc
Confidence 1345999999999999988865 48999999999999875332110 111111111 112
Q ss_pred ccceeHHHHHHHHHHhhcCCC--CCccEEEe
Q 023515 228 FGWVNVKDVANAHIQAFEVPS--ANGRYCLV 256 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~ 256 (281)
..+..++|+|+++.+++.... ..|..+..
T Consensus 416 ~r~g~pedvA~~v~fL~s~~a~~itG~~i~v 446 (454)
T 3u0b_A 416 FQGGQPVDVAELIAYFASPASNAVTGNTIRV 446 (454)
T ss_dssp SSCBCHHHHHHHHHHHHCGGGTTCCSCEEEE
T ss_pred cCCCCHHHHHHHHHHHhCCccCCCCCcEEEE
Confidence 335789999999999997543 35644433
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-24 Score=175.99 Aligned_cols=208 Identities=14% Similarity=0.068 Sum_probs=143.5
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEE-E--cCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKAS-V--RDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~-~--r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
+|+++||||+|+||++++++|+++|++|+++ + |+.++.+.+.... .+.. +.|.++++++++
T Consensus 1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~~~~~~~~~~------~~~~-----~~~~~~v~~~~~~~~~~ 69 (244)
T 1zmo_A 1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESEN------PGTI-----ALAEQKPERLVDATLQH 69 (244)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHS------TTEE-----ECCCCCGGGHHHHHGGG
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHHHHHHHHHHh------CCCc-----ccCHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999 5 8764433322221 1122 225555554443
Q ss_pred --CCcEeEEecccCCC--------CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCe
Q 023515 81 --GCDGVCHTASPFYH--------DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDV 147 (281)
Q Consensus 81 --~~d~Vih~a~~~~~--------~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (281)
++|+||||||.... ...+.|+..+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 70 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~------- 142 (244)
T 1zmo_A 70 GEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGGASVIFITSSVGKKPLA------- 142 (244)
T ss_dssp SSCEEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCCT-------
T ss_pred cCCCCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhCCCCC-------
Confidence 68999999996432 1234467899999999999999997532 457899999987764211
Q ss_pred eeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCC---CCCCCccHHHHHHHHh-CC
Q 023515 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLL---QPTLNTSAAAVLSLIK-GA 220 (281)
Q Consensus 148 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~---~~~~~~~~~~~~~~~~-~~ 220 (281)
....|+.+|.+.+.+++.++.++ |+++++++||.+.++.. .... .. ........ ..
T Consensus 143 ---------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~-~~-~~~~~~~~~~~ 205 (244)
T 1zmo_A 143 ---------------YNPLYGPARAATVALVESAAKTLSRDGILLYAIGPNFFNNPTYFPTSDWE-NN-PELRERVDRDV 205 (244)
T ss_dssp ---------------TCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCBTTTBCHHHHH-HC-HHHHHHHHHHC
T ss_pred ---------------CchHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCccccccccc-ch-HHHHHHHhcCC
Confidence 12359999999999999988764 89999999999988763 1100 00 11112211 11
Q ss_pred CCCCCCCccceeHHHHHHHHHHhhcCCCC--CccEEEe
Q 023515 221 QTYPNVTFGWVNVKDVANAHIQAFEVPSA--NGRYCLV 256 (281)
Q Consensus 221 ~~~~~~~~~~i~~~D~a~~i~~~~~~~~~--~g~~~~~ 256 (281)
+ ...+..++|+|+++++++..... .|.++..
T Consensus 206 p-----~~r~~~pe~vA~~v~~l~s~~~~~~tG~~i~v 238 (244)
T 1zmo_A 206 P-----LGRLGRPDEMGALITFLASRRAAPIVGQFFAF 238 (244)
T ss_dssp T-----TCSCBCHHHHHHHHHHHHTTTTGGGTTCEEEE
T ss_pred C-----CCCCcCHHHHHHHHHHHcCccccCccCCEEEe
Confidence 1 12377999999999999986442 4655444
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.6e-24 Score=180.69 Aligned_cols=202 Identities=18% Similarity=0.125 Sum_probs=143.7
Q ss_pred CcchhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcC---------CCCcchhhhhhhccCCCCcEEEEEcCCCC
Q 023515 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRD---------PNDPKKTRHLLALDGASERLQLFKANLLE 71 (281)
Q Consensus 1 ~~~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~---------~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 71 (281)
|.+.+.+++|+++||||+|+||++++++|+++|++|++++|. ..+.+.+........ . ...+|+++
T Consensus 1 M~~~~~l~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~--~---~~~~D~~~ 75 (319)
T 1gz6_A 1 MASPLRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRG--G---KAVANYDS 75 (319)
T ss_dssp --CCCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTT--C---EEEEECCC
T ss_pred CCCCCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhhC--C---eEEEeCCC
Confidence 443334678999999999999999999999999999998663 222222111111111 1 23579999
Q ss_pred cCcHHHHhc-------CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceee
Q 023515 72 EGSFDSIVD-------GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAV 136 (281)
Q Consensus 72 ~~~~~~~~~-------~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~ 136 (281)
.+++.++++ ++|+||||||.... ...+.++..+++|+.|+.++++++.+.+ +.++||++||..+.
T Consensus 76 ~~~~~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~grIV~vsS~~~~ 155 (319)
T 1gz6_A 76 VEAGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGI 155 (319)
T ss_dssp GGGHHHHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhc
Confidence 887766653 68999999996432 2344577899999999999999986642 45799999998776
Q ss_pred ecCCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHH
Q 023515 137 LNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAV 213 (281)
Q Consensus 137 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~ 213 (281)
++.+ ....|+.||.+.+.+++.++.++ |+++++++||.+ ++...... . .
T Consensus 156 ~~~~----------------------~~~~Y~aSK~a~~~~~~~la~el~~~gI~vn~v~PG~~-t~~~~~~~--~-~-- 207 (319)
T 1gz6_A 156 YGNF----------------------GQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAG-SRMTETVM--P-E-- 207 (319)
T ss_dssp HCCT----------------------TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECC-STTTGGGS--C-H--
T ss_pred cCCC----------------------CCHHHHHHHHHHHHHHHHHHHHhcccCEEEEEEeCCCc-cccccccC--C-h--
Confidence 5321 12459999999999999998874 899999999987 43311100 0 0
Q ss_pred HHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCC
Q 023515 214 LSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP 247 (281)
Q Consensus 214 ~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~ 247 (281)
....+++++|+|.++++++..+
T Consensus 208 ------------~~~~~~~p~dvA~~~~~l~s~~ 229 (319)
T 1gz6_A 208 ------------DLVEALKPEYVAPLVLWLCHES 229 (319)
T ss_dssp ------------HHHHHSCGGGTHHHHHHHTSTT
T ss_pred ------------hhhccCCHHHHHHHHHHHhCch
Confidence 1122568999999999999764
|
| >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.9e-23 Score=172.99 Aligned_cols=222 Identities=12% Similarity=0.041 Sum_probs=148.5
Q ss_pred cCCCeEEEeCCc--hHHHHHHHHHHHHCCCEEEEEEcCC-----------CCcchhhhhhhccCCCCcEEEEEcC-----
Q 023515 7 AAGKVVCVTGAS--GYIASWLVKLLLSRGYTVKASVRDP-----------NDPKKTRHLLALDGASERLQLFKAN----- 68 (281)
Q Consensus 7 ~~~~~ilItGat--G~iG~~l~~~L~~~g~~V~~~~r~~-----------~~~~~~~~~~~~~~~~~~~~~~~~D----- 68 (281)
+++|+++||||+ |+||++++++|+++|++|++++|++ .+.+.+..+. ..........+.+|
T Consensus 6 l~~k~~lVTGas~~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 84 (297)
T 1d7o_A 6 LRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLP-DGSLMEIKKVYPLDAVFDN 84 (297)
T ss_dssp CTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCT-TSSBCCEEEEEEECTTCCS
T ss_pred cCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEeeccccchhhhhhhhhhHhhhhhhhc-cccccccccccccceeccc
Confidence 568999999999 9999999999999999999998642 2222211110 00000012333333
Q ss_pred ---CC----C--------cCcHHHHhc-------CCcEeEEecccCC-------CCCCCccchhhhhHHHHHHHHHHHhh
Q 023515 69 ---LL----E--------EGSFDSIVD-------GCDGVCHTASPFY-------HDAKDPQVELLDPAVKGTLNVLNSCA 119 (281)
Q Consensus 69 ---~~----~--------~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~~~~~~~~n~~~~~~l~~~~~ 119 (281)
+. | +++++++++ ++|++|||||... ....+.|+..+++|+.++.++++++.
T Consensus 85 ~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~ 164 (297)
T 1d7o_A 85 PEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHFL 164 (297)
T ss_dssp GGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHG
T ss_pred hhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHH
Confidence 22 2 556666654 6899999998521 22334567899999999999999999
Q ss_pred hCCC-ccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCC-chhhhhHHHHHHHHHHHHHh----cCCcEEEEc
Q 023515 120 KFPS-IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSE-LWYPLSKTLAEDAAWKFAKE----KSIDLVTIN 193 (281)
Q Consensus 120 ~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~-~~Y~~sK~~~e~~~~~~~~~----~g~~~~~ir 193 (281)
+.+. .++||++||..++.+.+ .. ..|+.||.+.+.+++.++.+ .|+++++|+
T Consensus 165 ~~m~~~g~iv~isS~~~~~~~~----------------------~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~vn~v~ 222 (297)
T 1d7o_A 165 PIMNPGGASISLTYIASERIIP----------------------GYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTIS 222 (297)
T ss_dssp GGEEEEEEEEEEECGGGTSCCT----------------------TCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_pred HHhccCceEEEEeccccccCCC----------------------CcchHHHHHHHHHHHHHHHHHHHhCcccCcEEEEEe
Confidence 8642 36899999987654211 11 24999999999999988875 589999999
Q ss_pred CCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCccE-EEec
Q 023515 194 PAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRY-CLVE 257 (281)
Q Consensus 194 p~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~-~~~~ 257 (281)
||.+.+|..... ..............+ ...+.+++|+|+++++++.... ..|.+ ++.+
T Consensus 223 PG~v~T~~~~~~-~~~~~~~~~~~~~~p-----~~r~~~pedvA~~v~~l~s~~~~~itG~~i~vdg 283 (297)
T 1d7o_A 223 AGPLGSRAAKAI-GFIDTMIEYSYNNAP-----IQKTLTADEVGNAAAFLVSPLASAITGATIYVDN 283 (297)
T ss_dssp ECCCBCCCSSCC-SHHHHHHHHHHHHSS-----SCCCBCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred ccccccchhhhc-cccHHHHHHhhccCC-----CCCCCCHHHHHHHHHHHhCccccCCCCCEEEECC
Confidence 999999874431 111222222222221 1236799999999999997533 24644 4443
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-23 Score=185.76 Aligned_cols=225 Identities=15% Similarity=0.157 Sum_probs=160.8
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhhhh-ccCCCCcEEEEEcCCCCcCcHHHHhcCC---
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLA-LDGASERLQLFKANLLEEGSFDSIVDGC--- 82 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~~~--- 82 (281)
.+++||||||+|+||++++++|+++|+ +|++++|+........++.. +.....++.++.+|++|.+++.++++.+
T Consensus 225 ~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i~~~ 304 (486)
T 2fr1_A 225 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGDD 304 (486)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 478999999999999999999999998 59999998643322222111 1111257899999999999999988754
Q ss_pred ---cEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCC
Q 023515 83 ---DGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWF 154 (281)
Q Consensus 83 ---d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~ 154 (281)
|+|||+||.... ...+.++..+++|+.|+.++++++.+. +.++||++||..++++..+
T Consensus 305 g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~-~~~~~V~~SS~a~~~g~~g------------- 370 (486)
T 2fr1_A 305 VPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTREL-DLTAFVLFSSFASAFGAPG------------- 370 (486)
T ss_dssp SCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTS-CCSEEEEEEEHHHHTCCTT-------------
T ss_pred CCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcC-CCCEEEEEcChHhcCCCCC-------------
Confidence 999999997442 223446688899999999999999987 7899999999887764321
Q ss_pred CChhhhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeHH
Q 023515 155 SDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVK 234 (281)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 234 (281)
+..|+.+|...+.+.+++. ..|+++++|+||.+.++++... ... ..+......+++++
T Consensus 371 ---------~~~Yaaaka~l~~la~~~~-~~gi~v~~i~pG~~~~~gm~~~------~~~------~~~~~~g~~~i~~e 428 (486)
T 2fr1_A 371 ---------LGGYAPGNAYLDGLAQQRR-SDGLPATAVAWGTWAGSGMAEG------PVA------DRFRRHGVIEMPPE 428 (486)
T ss_dssp ---------CTTTHHHHHHHHHHHHHHH-HTTCCCEEEEECCBC------------------------CTTTTEECBCHH
T ss_pred ---------CHHHHHHHHHHHHHHHHHH-hcCCeEEEEECCeeCCCcccch------hHH------HHHHhcCCCCCCHH
Confidence 2349999999999988775 4699999999999987643211 000 01112234679999
Q ss_pred HHHHHHHHhhcCCCCCccEEEecCCCCHHHHHHHHHHh
Q 023515 235 DVANAHIQAFEVPSANGRYCLVERVSHYSEIVNIIREL 272 (281)
Q Consensus 235 D~a~~i~~~~~~~~~~g~~~~~~~~~t~~e~~~~i~~~ 272 (281)
|+++++..++..+.. .+.+.+ +.|..+...+...
T Consensus 429 ~~a~~l~~~l~~~~~--~~~v~~--~d~~~~~~~~~~~ 462 (486)
T 2fr1_A 429 TACRALQNALDRAEV--CPIVID--VRWDRFLLAYTAQ 462 (486)
T ss_dssp HHHHHHHHHHHTTCS--SCEECE--ECHHHHHHHHTSS
T ss_pred HHHHHHHHHHhCCCC--eEEEEe--CCHHHHhhhhccc
Confidence 999999999987653 233222 4577666655443
|
| >2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-23 Score=176.94 Aligned_cols=232 Identities=13% Similarity=0.046 Sum_probs=130.5
Q ss_pred cCCCeEEEeCC--chHHHHHHHHHHHHCCCEEEEEEcCC-----------CCcchh-----------hhhhhccCCC-Cc
Q 023515 7 AAGKVVCVTGA--SGYIASWLVKLLLSRGYTVKASVRDP-----------NDPKKT-----------RHLLALDGAS-ER 61 (281)
Q Consensus 7 ~~~~~ilItGa--tG~iG~~l~~~L~~~g~~V~~~~r~~-----------~~~~~~-----------~~~~~~~~~~-~~ 61 (281)
+++|+++|||| +|+||++++++|+++|++|++++|++ ++.... .......+.. ..
T Consensus 7 l~~k~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (319)
T 2ptg_A 7 LRGKTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKPVDLVF 86 (319)
T ss_dssp CTTCEEEEECCCCTTSHHHHHHHHHHHTTCEEEEEECHHHHHHHHC--------------------------------CC
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhccccccc
Confidence 56899999999 89999999999999999999998642 111110 0000000000 00
Q ss_pred EEEEEcC------------CCC--------cCcHHHHhc-------CCcEeEEecccCC-------CCCCCccchhhhhH
Q 023515 62 LQLFKAN------------LLE--------EGSFDSIVD-------GCDGVCHTASPFY-------HDAKDPQVELLDPA 107 (281)
Q Consensus 62 ~~~~~~D------------~~~--------~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~~~~~~~~n 107 (281)
..++.+| ++| .++++++++ ++|++|||||... ....+.|+..+++|
T Consensus 87 ~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~vN 166 (319)
T 2ptg_A 87 DKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAAVSSS 166 (319)
T ss_dssp SEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHHHHHHHH
T ss_pred cccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHHHHHhHh
Confidence 2444444 333 346666554 6899999998531 22334567899999
Q ss_pred HHHHHHHHHHhhhCCC-ccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCC-chhhhhHHHHHHHHHHHHHh-
Q 023515 108 VKGTLNVLNSCAKFPS-IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSE-LWYPLSKTLAEDAAWKFAKE- 184 (281)
Q Consensus 108 ~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~-~~Y~~sK~~~e~~~~~~~~~- 184 (281)
+.++.++++++.+.+. .++||++||..+..+.+ .. ..|+.||++.+.+++.++.+
T Consensus 167 ~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~~----------------------~~~~~Y~asKaal~~l~~~la~el 224 (319)
T 2ptg_A 167 SYSFVSLLQHFLPLMKEGGSALALSYIASEKVIP----------------------GYGGGMSSAKAALESDCRTLAFEA 224 (319)
T ss_dssp THHHHHHHHHHGGGEEEEEEEEEEEECC----------------------------------------THHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCceEEEEeccccccccC----------------------ccchhhHHHHHHHHHHHHHHHHHh
Confidence 9999999999998642 36899999987654211 01 24999999999999988765
Q ss_pred ---cCCcEEEEcCCcccCCCCCCCCCccHHHH-HHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCccEEEecC
Q 023515 185 ---KSIDLVTINPAMVIGPLLQPTLNTSAAAV-LSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVER 258 (281)
Q Consensus 185 ---~g~~~~~irp~~v~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~~ 258 (281)
.|+++++|+||.|.++............+ ........ .......+..++|+|+++++++.... ..|.++..++
T Consensus 225 ~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~r~~~peevA~~v~~L~s~~~~~itG~~i~vdG 303 (319)
T 2ptg_A 225 GRARAVRVNCISAGPLKSRAASAIGKAGDKTFIDLAIDYSE-ANAPLQKELESDDVGRAALFLLSPLARAVTGATLYVDN 303 (319)
T ss_dssp HHHHCCEEEEEEECCCC--------------------------------CCCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred ccccCeeEEEEeeCCccChhhhhcccccchhhHHHHHHHHh-ccCCCCCCCCHHHHHHHHHHHhCcccCCccCCEEEECC
Confidence 48999999999999875321100000000 00000000 00011236799999999999998533 3565555544
Q ss_pred CCC
Q 023515 259 VSH 261 (281)
Q Consensus 259 ~~t 261 (281)
..+
T Consensus 304 G~~ 306 (319)
T 2ptg_A 304 GLH 306 (319)
T ss_dssp TCT
T ss_pred Cce
Confidence 333
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-22 Score=179.78 Aligned_cols=226 Identities=15% Similarity=0.144 Sum_probs=162.6
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhhh-hccCCCCcEEEEEcCCCCcCcHHHHhcC--Cc
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLL-ALDGASERLQLFKANLLEEGSFDSIVDG--CD 83 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~d 83 (281)
.+++||||||+|+||++++++|+++|+ +|++++|+......+..+. .+.....++.++.+|++|.+++.++++. +|
T Consensus 258 ~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~~~ld 337 (511)
T 2z5l_A 258 PSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALVTAYPPN 337 (511)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHHSCCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhcCCCc
Confidence 478999999999999999999999998 6899999864332222211 1111235789999999999999999875 99
Q ss_pred EeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChh
Q 023515 84 GVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPE 158 (281)
Q Consensus 84 ~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~ 158 (281)
+|||+||.... ...+.++..+++|+.|+.++.+++....+.++||++||..++++..
T Consensus 338 ~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~SS~a~~~g~~------------------ 399 (511)
T 2z5l_A 338 AVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFSSVTGTWGNA------------------ 399 (511)
T ss_dssp EEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEEEGGGTTCCT------------------
T ss_pred EEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeCHHhcCCCC------------------
Confidence 99999997432 2234456788999999999999988643568999999987766432
Q ss_pred hhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeHHHHHH
Q 023515 159 VCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVAN 238 (281)
Q Consensus 159 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~ 238 (281)
.+..|+.+|...+.+++.+ +..|+++++|+||.+...++... . ....... ....+++++|+++
T Consensus 400 ----g~~~YaaaKa~ld~la~~~-~~~gi~v~sv~pG~~~~tgm~~~---~--~~~~~~~-------~g~~~l~~e~~a~ 462 (511)
T 2z5l_A 400 ----GQGAYAAANAALDALAERR-RAAGLPATSVAWGLWGGGGMAAG---A--GEESLSR-------RGLRAMDPDAAVD 462 (511)
T ss_dssp ----TBHHHHHHHHHHHHHHHHH-HTTTCCCEEEEECCBCSTTCCCC---H--HHHHHHH-------HTBCCBCHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHHHHH-HHcCCcEEEEECCcccCCccccc---c--cHHHHHh-------cCCCCCCHHHHHH
Confidence 1245999999999999877 45699999999999843332211 1 1111111 1234789999999
Q ss_pred HHHHhhcCCCCCccEEEecCCCCHHHHHHHHHHh
Q 023515 239 AHIQAFEVPSANGRYCLVERVSHYSEIVNIIREL 272 (281)
Q Consensus 239 ~i~~~~~~~~~~g~~~~~~~~~t~~e~~~~i~~~ 272 (281)
++..++.++.. .+.+. .+.|..+...+...
T Consensus 463 ~l~~al~~~~~--~v~v~--~~d~~~~~~~~~~~ 492 (511)
T 2z5l_A 463 ALLGAMGRNDV--CVTVV--DVDWERFAPATNAI 492 (511)
T ss_dssp HHHHHHHHTCS--EEEEC--CBCHHHHHHHHHHH
T ss_pred HHHHHHhCCCC--EEEEE--eCCHHHHHhhhccc
Confidence 99999986643 22222 35577776665543
|
| >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-22 Score=170.50 Aligned_cols=224 Identities=14% Similarity=0.043 Sum_probs=146.2
Q ss_pred cCCCeEEEeCC--chHHHHHHHHHHHHCCCEEEEEEcCC-----------CCcchhhhhhhccCCCCcEEEEEcC-----
Q 023515 7 AAGKVVCVTGA--SGYIASWLVKLLLSRGYTVKASVRDP-----------NDPKKTRHLLALDGASERLQLFKAN----- 68 (281)
Q Consensus 7 ~~~~~ilItGa--tG~iG~~l~~~L~~~g~~V~~~~r~~-----------~~~~~~~~~~~~~~~~~~~~~~~~D----- 68 (281)
+++|+++|||| +|+||++++++|+++|++|++++|++ .+...+..+. .......+.++.+|
T Consensus 7 l~gk~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~ 85 (315)
T 2o2s_A 7 LRGQTAFVAGVADSHGYGWAIAKHLASAGARVALGTWPPVLGLFQKSLQSGRLDEDRKLP-DGSLIEFAGVYPLDAAFDK 85 (315)
T ss_dssp CTTCEEEEECCSSSSSHHHHHHHHHHTTTCEEEEEECHHHHHHHHHHHHHTTTHHHHBCT-TSCBCCCSCEEECCTTCSS
T ss_pred CCCCEEEEeCCCCCCChHHHHHHHHHHCCCEEEEEecccccchhhhhhhhhhhhhhhhhh-ccccccccccccccccccc
Confidence 56899999999 89999999999999999999998742 1111111110 00000012333333
Q ss_pred -------CCC--------cCcHHHHhc-------CCcEeEEecccCC-------CCCCCccchhhhhHHHHHHHHHHHhh
Q 023515 69 -------LLE--------EGSFDSIVD-------GCDGVCHTASPFY-------HDAKDPQVELLDPAVKGTLNVLNSCA 119 (281)
Q Consensus 69 -------~~~--------~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~~~~~~~~n~~~~~~l~~~~~ 119 (281)
++| .++++++++ ++|++|||||... ....+.|+..+++|+.++.++++++.
T Consensus 86 ~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~ 165 (315)
T 2o2s_A 86 PEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLLQHFG 165 (315)
T ss_dssp TTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHS
T ss_pred cchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHH
Confidence 332 556666654 6899999998531 22334567899999999999999999
Q ss_pred hCCC-ccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh----cCCcEEEEcC
Q 023515 120 KFPS-IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE----KSIDLVTINP 194 (281)
Q Consensus 120 ~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~g~~~~~irp 194 (281)
+.+. .++||++||..+..+.+. ....|+.||++.+.+++.++.+ .|+++++|+|
T Consensus 166 ~~m~~~g~Iv~isS~~~~~~~~~---------------------~~~~Y~asKaal~~l~~~la~el~~~~gIrvn~v~P 224 (315)
T 2o2s_A 166 PIMNEGGSAVTLSYLAAERVVPG---------------------YGGGMSSAKAALESDTRTLAWEAGQKYGVRVNAISA 224 (315)
T ss_dssp TTEEEEEEEEEEEEGGGTSCCTT---------------------CCTTHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred HHHhcCCEEEEEecccccccCCC---------------------ccHHHHHHHHHHHHHHHHHHHHhCcccCeEEEEEec
Confidence 8742 368999999876542110 0024999999999999988765 5899999999
Q ss_pred CcccCCCCCCC----CCccHHHH-HHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCccEEEec
Q 023515 195 AMVIGPLLQPT----LNTSAAAV-LSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVE 257 (281)
Q Consensus 195 ~~v~g~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~ 257 (281)
|.|.++..... ........ .......| ...+..++|+|+++++++.... ..|.++..+
T Consensus 225 G~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~p-----~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vd 289 (315)
T 2o2s_A 225 GPLKSRAASAIGKSGEKSFIDYAIDYSYNNAP-----LRRDLHSDDVGGAALFLLSPLARAVSGVTLYVD 289 (315)
T ss_dssp CCCCCHHHHHTTCSSSSCHHHHHHHHHHHHSS-----SCCCCCHHHHHHHHHHHTSGGGTTCCSCEEEES
T ss_pred ccccchhhhhccccccchhHHHHHHHHhccCC-----CCCCCCHHHHHHHHHHHhCchhccCcCCEEEEC
Confidence 99987631100 00011111 11111111 1236799999999999997533 356555544
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-22 Score=180.07 Aligned_cols=206 Identities=16% Similarity=0.120 Sum_probs=153.4
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhhhh-ccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLA-LDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
++++|||||+|+||+++++.|+++|+ +|+++.|+....+...++.. ......++.++.+|++|.+++.++++
T Consensus 239 ~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~i~~~g 318 (496)
T 3mje_A 239 HGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAELPEDA 318 (496)
T ss_dssp CSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTCCTTS
T ss_pred CCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHhC
Confidence 48999999999999999999999998 78888887543322222111 11123579999999999999998886
Q ss_pred CCcEeEEecccC-CC-----CCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCC
Q 023515 81 GCDGVCHTASPF-YH-----DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWF 154 (281)
Q Consensus 81 ~~d~Vih~a~~~-~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~ 154 (281)
++|+||||||.. .. ...+.++..+++|+.|+.++.+++.+. ..++||++||+.++.+.+
T Consensus 319 ~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~-~~~~iV~~SS~a~~~g~~-------------- 383 (496)
T 3mje_A 319 PLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADL-DLDAFVLFSSGAAVWGSG-------------- 383 (496)
T ss_dssp CEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTS-CCSEEEEEEEHHHHTTCT--------------
T ss_pred CCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhcc-CCCEEEEEeChHhcCCCC--------------
Confidence 479999999975 22 123346688999999999999999998 778999999998876432
Q ss_pred CChhhhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeHH
Q 023515 155 SDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVK 234 (281)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 234 (281)
.+..|+.+|...+.+.+++. ..|+++++|.||.+.++++.... .....+.+. ....+.++
T Consensus 384 --------g~~~YaAaKa~ldala~~~~-~~Gi~v~sV~pG~w~~~gm~~~~----~~~~~l~~~-------g~~~l~pe 443 (496)
T 3mje_A 384 --------GQPGYAAANAYLDALAEHRR-SLGLTASSVAWGTWGEVGMATDP----EVHDRLVRQ-------GVLAMEPE 443 (496)
T ss_dssp --------TCHHHHHHHHHHHHHHHHHH-HTTCCCEEEEECEESSSCC----------CHHHHHT-------TEEEECHH
T ss_pred --------CcHHHHHHHHHHHHHHHHHH-hcCCeEEEEECCcccCCccccCh----HHHHHHHhc-------CCCCCCHH
Confidence 12459999999999998774 46999999999999876543211 111122221 23367999
Q ss_pred HHHHHHHHhhcCCCC
Q 023515 235 DVANAHIQAFEVPSA 249 (281)
Q Consensus 235 D~a~~i~~~~~~~~~ 249 (281)
+.++++..++..+..
T Consensus 444 ~~~~~l~~~l~~~~~ 458 (496)
T 3mje_A 444 HALGALDQMLENDDT 458 (496)
T ss_dssp HHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHcCCCc
Confidence 999999999986654
|
| >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ... | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-22 Score=172.21 Aligned_cols=171 Identities=10% Similarity=0.082 Sum_probs=127.1
Q ss_pred CCeEEEeCCch--HHHHHHHHHHHHCCCEEEEEEcCC---------CCcchhhhhhhc-cCCCCcEEEEEcCCCCc--C-
Q 023515 9 GKVVCVTGASG--YIASWLVKLLLSRGYTVKASVRDP---------NDPKKTRHLLAL-DGASERLQLFKANLLEE--G- 73 (281)
Q Consensus 9 ~~~ilItGatG--~iG~~l~~~L~~~g~~V~~~~r~~---------~~~~~~~~~~~~-~~~~~~~~~~~~D~~~~--~- 73 (281)
+|+++||||++ +||++++++|+++|++|++.+|++ ++.......... ......+.++.+|+++. +
T Consensus 2 ~k~~lITGas~~~GIG~aiA~~la~~G~~Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~ 81 (329)
T 3lt0_A 2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAND 81 (329)
T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCSSGGG
T ss_pred CcEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCccccccccchHHHHHHHHHHHhhcccccccccccccccccchhh
Confidence 68999999875 999999999999999999776553 222221111111 11123578899999887 6
Q ss_pred -----------------cHHHHhc-------CCcEeEEecccCC-------CCCCCccchhhhhHHHHHHHHHHHhhhCC
Q 023515 74 -----------------SFDSIVD-------GCDGVCHTASPFY-------HDAKDPQVELLDPAVKGTLNVLNSCAKFP 122 (281)
Q Consensus 74 -----------------~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~ 122 (281)
++.++++ ++|++|||||... ....+.|+..+++|+.++.++++++.+.+
T Consensus 82 ~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m 161 (329)
T 3lt0_A 82 IDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNIM 161 (329)
T ss_dssp CCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGE
T ss_pred hhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 6666654 6899999998521 12334577899999999999999999874
Q ss_pred C-ccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCc-hhhhhHHHHHHHHHHHHHh----cCCcEEEEcCCc
Q 023515 123 S-IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL-WYPLSKTLAEDAAWKFAKE----KSIDLVTINPAM 196 (281)
Q Consensus 123 ~-~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~-~Y~~sK~~~e~~~~~~~~~----~g~~~~~irp~~ 196 (281)
. .++||++||..+..+.+ ... .|+.||++.+.+++.++.+ .|+++++|.||.
T Consensus 162 ~~~g~Iv~isS~~~~~~~~----------------------~~~~~Y~asKaal~~~~~~la~el~~~~gI~vn~v~PG~ 219 (329)
T 3lt0_A 162 KPQSSIISLTYHASQKVVP----------------------GYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGP 219 (329)
T ss_dssp EEEEEEEEEECGGGTSCCT----------------------TCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred hhCCeEEEEeCccccCCCC----------------------cchHHHHHHHHHHHHHHHHHHHHhCCccCeEEEEEecce
Confidence 2 26899999987654221 112 4999999999999988765 489999999999
Q ss_pred ccCCC
Q 023515 197 VIGPL 201 (281)
Q Consensus 197 v~g~~ 201 (281)
|.++.
T Consensus 220 v~T~~ 224 (329)
T 3lt0_A 220 LKSRA 224 (329)
T ss_dssp CCCHH
T ss_pred eechh
Confidence 98864
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.8e-21 Score=172.55 Aligned_cols=224 Identities=13% Similarity=0.059 Sum_probs=158.1
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCE-EEEE-EcCCCC-------------cchhhhhhhccCCCCcEEEEEcCCCCc
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYT-VKAS-VRDPND-------------PKKTRHLLALDGASERLQLFKANLLEE 72 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~-V~~~-~r~~~~-------------~~~~~~~~~~~~~~~~~~~~~~D~~~~ 72 (281)
+++++|||||+|+||.++++.|+++|++ |+++ +|+... ...+...... ...++.++.+|++|.
T Consensus 250 ~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~--~g~~v~~~~~Dvtd~ 327 (525)
T 3qp9_A 250 ADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELAD--LGATATVVTCDLTDA 327 (525)
T ss_dssp TTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHH--HTCEEEEEECCTTSH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHh--cCCEEEEEECCCCCH
Confidence 4789999999999999999999999987 5556 777432 2222221111 125799999999999
Q ss_pred CcHHHHhc------CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCCC----ccEEEEeccceeee
Q 023515 73 GSFDSIVD------GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFPS----IKRVVLTSSMAAVL 137 (281)
Q Consensus 73 ~~~~~~~~------~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~----~~~~v~~SS~~~~~ 137 (281)
+++.++++ ++|+||||||.... ...+.++..+++|+.|+.++.+++.+.+. .++||++||+.++.
T Consensus 328 ~~v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~iV~~SS~a~~~ 407 (525)
T 3qp9_A 328 EAAARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSSVAAIW 407 (525)
T ss_dssp HHHHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCEEEEEEEGGGTT
T ss_pred HHHHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCEEEEECCHHHcC
Confidence 99998886 46999999997432 22344678899999999999999998731 67999999998876
Q ss_pred cCCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHH
Q 023515 138 NTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLI 217 (281)
Q Consensus 138 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~ 217 (281)
+.+ .+..|+.+|...+.+.+++. ..|+++++|+||.+-++.... . .....+.
T Consensus 408 g~~----------------------g~~~YaaaKa~l~~lA~~~~-~~gi~v~sI~pG~~~tgm~~~--~---~~~~~~~ 459 (525)
T 3qp9_A 408 GGA----------------------GQGAYAAGTAFLDALAGQHR-ADGPTVTSVAWSPWEGSRVTE--G---ATGERLR 459 (525)
T ss_dssp CCT----------------------TCHHHHHHHHHHHHHHTSCC-SSCCEEEEEEECCBTTSGGGS--S---HHHHHHH
T ss_pred CCC----------------------CCHHHHHHHHHHHHHHHHHH-hCCCCEEEEECCccccccccc--h---hhHHHHH
Confidence 432 12459999999999876653 459999999999995433211 0 1111121
Q ss_pred hCCCCCCCCCccceeHHHHHHHHHHhhcCCCCCccEEEecCCCCHHHHHHHHHHh
Q 023515 218 KGAQTYPNVTFGWVNVKDVANAHIQAFEVPSANGRYCLVERVSHYSEIVNIIREL 272 (281)
Q Consensus 218 ~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~~~g~~~~~~~~~t~~e~~~~i~~~ 272 (281)
. .....+.++++++++..++..+.. .+.-..+.|..+...+...
T Consensus 460 ~-------~g~~~l~pee~a~~l~~~l~~~~~----~v~v~~~dw~~~~~~~~~~ 503 (525)
T 3qp9_A 460 R-------LGLRPLAPATALTALDTALGHGDT----AVTIADVDWSSFAPGFTTA 503 (525)
T ss_dssp H-------TTBCCBCHHHHHHHHHHHHHHTCS----EEEECCBCHHHHHHHHHSS
T ss_pred h-------cCCCCCCHHHHHHHHHHHHhCCCC----eEEEEeCCHHHHHhhcccc
Confidence 1 123468999999999999986643 1222345566666655443
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-21 Score=179.86 Aligned_cols=197 Identities=17% Similarity=0.146 Sum_probs=138.3
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEc---------CCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHH
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVR---------DPNDPKKTRHLLALDGASERLQLFKANLLEEGSFD 76 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r---------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 76 (281)
.+++|+++||||+|+||++++++|+++|++|++++| +....+.+........ .. +.+|++|.++++
T Consensus 16 ~l~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~--~~---~~~D~~d~~~~~ 90 (613)
T 3oml_A 16 RYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAG--GE---AVADYNSVIDGA 90 (613)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHTT--CC---EEECCCCGGGHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHhC--Ce---EEEEeCCHHHHH
Confidence 467899999999999999999999999999999988 3333333322222111 12 347999988888
Q ss_pred HHhc-------CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCC
Q 023515 77 SIVD-------GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGK 141 (281)
Q Consensus 77 ~~~~-------~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~ 141 (281)
++++ ++|++|||||... ....+.|+..+++|+.|+.++++++.+.+ +.++||++||..+.++..
T Consensus 91 ~~~~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~g~IV~isS~a~~~~~~- 169 (613)
T 3oml_A 91 KVIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSSNSGIYGNF- 169 (613)
T ss_dssp HHHC----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCHHHHHCCT-
T ss_pred HHHHHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcCCCC-
Confidence 7776 6899999999643 22345577899999999999999996532 457999999988776322
Q ss_pred CCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHh
Q 023515 142 PRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIK 218 (281)
Q Consensus 142 ~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~ 218 (281)
....|+.||.+.+.+++.++.++ |+++++|.||.+ .+......
T Consensus 170 ---------------------~~~~Y~asKaal~~lt~~la~e~~~~gI~vn~v~Pg~~-t~~~~~~~------------ 215 (613)
T 3oml_A 170 ---------------------GQVNYTAAKMGLIGLANTVAIEGARNNVLCNVIVPTAA-SRMTEGIL------------ 215 (613)
T ss_dssp ---------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-------CCCC------------
T ss_pred ---------------------CChHHHHHHHHHHHHHHHHHHHhCccCeEEEEEECCCC-Chhhhhcc------------
Confidence 12459999999999999998764 899999999865 22211110
Q ss_pred CCCCCCCCCccceeHHHHHHHHHHhhcCC
Q 023515 219 GAQTYPNVTFGWVNVKDVANAHIQAFEVP 247 (281)
Q Consensus 219 ~~~~~~~~~~~~i~~~D~a~~i~~~~~~~ 247 (281)
+......+.++|+|.++++++...
T Consensus 216 -----~~~~~~~~~pedvA~~v~~L~s~~ 239 (613)
T 3oml_A 216 -----PDILFNELKPKLIAPVVAYLCHES 239 (613)
T ss_dssp -----CHHHHTTCCGGGTHHHHHHTTSTT
T ss_pred -----chhhhhcCCHHHHHHHHHHhcCCC
Confidence 011123468999999999999865
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=7.9e-22 Score=168.10 Aligned_cols=175 Identities=15% Similarity=0.059 Sum_probs=124.1
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCC-------EEEEEEcCCCCcchhhhh-hhccCCCCcEEEEEcCCCCcCcHHHHhc
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGY-------TVKASVRDPNDPKKTRHL-LALDGASERLQLFKANLLEEGSFDSIVD 80 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 80 (281)
.|||+||||+||||++++..|+++|+ +|+++++.+.. ...... ..... ..+.++ +|+++.+++.++++
T Consensus 4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~-~~~~g~~~dl~~--~~~~~~-~di~~~~~~~~a~~ 79 (327)
T 1y7t_A 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAM-KALEGVVMELED--CAFPLL-AGLEATDDPKVAFK 79 (327)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGH-HHHHHHHHHHHT--TTCTTE-EEEEEESCHHHHTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCch-hhccchhhhhhc--cccccc-CCeEeccChHHHhC
Confidence 45899999999999999999999886 89999875410 111110 00100 112233 67877778888899
Q ss_pred CCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCCCCCeeeecCC-CCChh
Q 023515 81 GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDETW-FSDPE 158 (281)
Q Consensus 81 ~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~-~~~~~ 158 (281)
++|+|||+||...... ....++++.|+.++.+++++++++. ...+++++|+..... .....|.. ...
T Consensus 80 ~~D~Vih~Ag~~~~~~-~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~--------~~~~~~~~~~~~-- 148 (327)
T 1y7t_A 80 DADYALLVGAAPRKAG-MERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTN--------ALIAYKNAPGLN-- 148 (327)
T ss_dssp TCSEEEECCCCCCCTT-CCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHH--------HHHHHHTCTTSC--
T ss_pred CCCEEEECCCcCCCCC-CCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhh--------HHHHHHHcCCCC--
Confidence 9999999999755433 3345889999999999999999972 223788877743111 00011211 111
Q ss_pred hhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCC
Q 023515 159 VCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLL 202 (281)
Q Consensus 159 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~ 202 (281)
+.+.|+.+|...|++...+++.+|++.+++||++||||..
T Consensus 149 ----p~~~yg~tkl~~er~~~~~a~~~g~~~~~vr~~~V~G~h~ 188 (327)
T 1y7t_A 149 ----PRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHS 188 (327)
T ss_dssp ----GGGEEECCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSS
T ss_pred ----hhheeccchHHHHHHHHHHHHHhCcChhheeeeEEEcCCC
Confidence 2256999999999999999988999999999999999864
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.8e-20 Score=169.35 Aligned_cols=224 Identities=14% Similarity=0.092 Sum_probs=155.2
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCC-CCcCcH-HHHh---c
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL-LEEGSF-DSIV---D 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~-~~~~~~-~~~~---~ 80 (281)
.+++|+++||||+++||++++++|+++|++|++.+|+. .+.+..+.... ..++..+.+|+ .+.+.+ +.+. .
T Consensus 319 ~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~--~~~~~~~i~~~--g~~~~~~~~Dv~~~~~~~~~~~~~~~G 394 (604)
T 2et6_A 319 SLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKD--ATKTVDEIKAA--GGEAWPDQHDVAKDSEAIIKNVIDKYG 394 (604)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSC--CHHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHHHS
T ss_pred ccCCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCcc--HHHHHHHHHhc--CCeEEEEEcChHHHHHHHHHHHHHhcC
Confidence 35689999999999999999999999999999988743 22222222111 23577788898 554332 2222 2
Q ss_pred CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeecC
Q 023515 81 GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (281)
Q Consensus 81 ~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~ 152 (281)
++|++|||||... ....+.|+..+++|+.|+.++.+++.+++ +..+||++||..+..+.+
T Consensus 395 ~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~ag~~~~~------------ 462 (604)
T 2et6_A 395 TIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSGIYGNF------------ 462 (604)
T ss_dssp CCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSCCT------------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccCCC------------
Confidence 7999999999632 23345688999999999999999998753 346899999987765321
Q ss_pred CCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCcc
Q 023515 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG 229 (281)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (281)
....|+.||.+...+.+.++.+ +|+++++|.||. .++.... ... ....+
T Consensus 463 ----------~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~PG~-~T~m~~~-------~~~----------~~~~~ 514 (604)
T 2et6_A 463 ----------GQANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPHA-ETAMTLS-------IMR----------EQDKN 514 (604)
T ss_dssp ----------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECC-CCCC--------------------------CC
T ss_pred ----------CChhHHHHHHHHHHHHHHHHHHhCccCeEEEEEcCCC-CCccccc-------cCc----------hhhcc
Confidence 1245999999999999999876 489999999984 4433110 000 01123
Q ss_pred ceeHHHHHHHHHHhhcCCC-CCcc-EEEec------------------CCCCHHHHHHHHHHhC
Q 023515 230 WVNVKDVANAHIQAFEVPS-ANGR-YCLVE------------------RVSHYSEIVNIIRELY 273 (281)
Q Consensus 230 ~i~~~D~a~~i~~~~~~~~-~~g~-~~~~~------------------~~~t~~e~~~~i~~~~ 273 (281)
...++|+|.++++++.... ..|. +.+.| ..++..++.+.+.+..
T Consensus 515 ~~~pe~vA~~v~~L~s~~~~itG~~~~vdGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 578 (604)
T 2et6_A 515 LYHADQVAPLLVYLGTDDVPVTGETFEIGGGWIGNTRWQRAKGAVSHDEHTTVEFIKEHLNEIT 578 (604)
T ss_dssp SSCGGGTHHHHHHTTSTTCCCCSCEEEEETTEEEEEEEEECCCEECCSSSCCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhCCccCCCCcEEEECCCeeEeeeeeccccccCCCCCCCHHHHHHHHHHHh
Confidence 4589999999999987543 2443 33222 2367788887777664
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-20 Score=171.78 Aligned_cols=201 Identities=19% Similarity=0.155 Sum_probs=140.2
Q ss_pred CcchhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCC---------CCcchhhhhhhccCCCCcEEEEEcCCCC
Q 023515 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDP---------NDPKKTRHLLALDGASERLQLFKANLLE 71 (281)
Q Consensus 1 ~~~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~---------~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 71 (281)
|++| .+++|+++||||+++||+++++.|+++|++|++.+|+. +..+.+..+....+ ..+ .+|+.|
T Consensus 1 m~~~-~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g--~~~---~~d~~d 74 (604)
T 2et6_A 1 MSPV-DFKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNG--GVA---VADYNN 74 (604)
T ss_dssp -CCC-CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHHHHHTT--CEE---EEECCC
T ss_pred CCCC-CCCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHhcC--CeE---EEEcCC
Confidence 4433 36789999999999999999999999999999998764 22222222221111 122 357777
Q ss_pred cCcHHHHhc-------CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceee
Q 023515 72 EGSFDSIVD-------GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAV 136 (281)
Q Consensus 72 ~~~~~~~~~-------~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~ 136 (281)
.++++++++ ++|++|||||... ....+.|+..+++|+.|+.++++++.+++ +.++||++||..+.
T Consensus 75 ~~~~~~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G~IVnisS~ag~ 154 (604)
T 2et6_A 75 VLDGDKIVETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAGL 154 (604)
T ss_dssp TTCHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCHHHc
Confidence 766555543 7999999999632 23345688999999999999999998764 34689999998776
Q ss_pred ecCCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHH
Q 023515 137 LNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAV 213 (281)
Q Consensus 137 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~ 213 (281)
.+.+ ....|+.||.+...+.+.++.+ +|+++++|.|+ +.++......
T Consensus 155 ~~~~----------------------~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~Pg-~~T~m~~~~~------- 204 (604)
T 2et6_A 155 YGNF----------------------GQANYASAKSALLGFAETLAKEGAKYNIKANAIAPL-ARSRMTESIM------- 204 (604)
T ss_dssp HCCT----------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-CCCHHHHTTS-------
T ss_pred CCCC----------------------CchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEccC-CcCccccccC-------
Confidence 5321 1235999999999999999876 48999999996 3322100000
Q ss_pred HHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCC
Q 023515 214 LSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP 247 (281)
Q Consensus 214 ~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~ 247 (281)
+........++|+|.++++++...
T Consensus 205 ----------~~~~~~~~~pe~vA~~v~~L~s~~ 228 (604)
T 2et6_A 205 ----------PPPMLEKLGPEKVAPLVLYLSSAE 228 (604)
T ss_dssp ----------CHHHHTTCSHHHHHHHHHHHTSSS
T ss_pred ----------ChhhhccCCHHHHHHHHHHHhCCc
Confidence 000112358999999999999764
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.7e-20 Score=157.91 Aligned_cols=207 Identities=8% Similarity=-0.067 Sum_probs=145.0
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHH-CCCEEEEEEcCCCCcch------------hhhhhhccCCCCcEEEEEcCCCCcCc
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLS-RGYTVKASVRDPNDPKK------------TRHLLALDGASERLQLFKANLLEEGS 74 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~------------~~~~~~~~~~~~~~~~~~~D~~~~~~ 74 (281)
.+|++|||||+++||+++++.|++ +|.+|++++|+.+.... +..+.... ...+..+.+|++|+++
T Consensus 46 ~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~--G~~a~~i~~Dvtd~~~ 123 (405)
T 3zu3_A 46 GPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQK--GLYAKSINGDAFSDEI 123 (405)
T ss_dssp CCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHT--TCCEEEEESCTTSHHH
T ss_pred CCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHHhc--CCceEEEECCCCCHHH
Confidence 478999999999999999999999 99999999987655321 11111111 2468889999999988
Q ss_pred HHHHhc-------CCcEeEEecccC---------------------------------------CCCCCCccchhhhhHH
Q 023515 75 FDSIVD-------GCDGVCHTASPF---------------------------------------YHDAKDPQVELLDPAV 108 (281)
Q Consensus 75 ~~~~~~-------~~d~Vih~a~~~---------------------------------------~~~~~~~~~~~~~~n~ 108 (281)
+.++++ ++|++|||||.. .+...+.|+..+++|+
T Consensus 124 v~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~v~Vn~ 203 (405)
T 3zu3_A 124 KQLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAVMG 203 (405)
T ss_dssp HHHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhhc
Confidence 887765 689999999863 1123345778888888
Q ss_pred HHHH-HHHHHhhh-CC--CccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh
Q 023515 109 KGTL-NVLNSCAK-FP--SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE 184 (281)
Q Consensus 109 ~~~~-~l~~~~~~-~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~ 184 (281)
.++. .+++++.. .+ +..++|++||+.+..+.+.. ....|+++|.+.+.+.+.++.+
T Consensus 204 ~~~~~~~~~~~~~~~m~~~gG~IVniSSi~~~~~~p~~--------------------~~~aY~AaKaal~~ltrsLA~E 263 (405)
T 3zu3_A 204 GEDWQMWIDALLDAGVLAEGAQTTAFTYLGEKITHDIY--------------------WNGSIGAAKKDLDQKVLAIRES 263 (405)
T ss_dssp SHHHHHHHHHHHHHTCEEEEEEEEEEECCCCGGGTTTT--------------------TTSHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhhhCCcEEEEEeCchhhCcCCCc--------------------cchHHHHHHHHHHHHHHHHHHH
Confidence 8776 56666543 21 23589999998765432110 0135999999999999999876
Q ss_pred ---c-CCcEEEEcCCcccCCCCC--CCCCccHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcC
Q 023515 185 ---K-SIDLVTINPAMVIGPLLQ--PTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEV 246 (281)
Q Consensus 185 ---~-g~~~~~irp~~v~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~ 246 (281)
. |+++.++.||.+.++... +........+.+.++ .+..++||++++.+++..
T Consensus 264 la~~~GIRVNaVaPG~i~T~~s~~ip~~p~y~~~l~~~mk----------r~G~~Ed~a~~i~~L~sd 321 (405)
T 3zu3_A 264 LAAHGGGDARVSVLKAVVSQASSAIPMMPLYLSLLFKVMK----------EKGTHEGCIEQVYSLYKD 321 (405)
T ss_dssp HHTTTSCEEEEEECCCCCCHHHHTSTTHHHHHHHHHHHHH----------HHTCCCCHHHHHHHHHHH
T ss_pred hCcccCeEEEEEEeCCCcCchhhcCCCCcHHHHHHHHHHh----------cCCCcHHHHHHHHHHHhc
Confidence 4 899999999999887422 111001111222222 245789999999999874
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-19 Score=157.12 Aligned_cols=207 Identities=9% Similarity=-0.091 Sum_probs=142.5
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHH-CCCEEEEEEcCCCCcch------------hhhhhhccCCCCcEEEEEcCCCCcCc
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLS-RGYTVKASVRDPNDPKK------------TRHLLALDGASERLQLFKANLLEEGS 74 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~------------~~~~~~~~~~~~~~~~~~~D~~~~~~ 74 (281)
.+|++|||||+++||+++++.|++ +|.+|++++|+.+.... +.++.... ...+..+.+|++|+++
T Consensus 60 ~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~--G~~a~~i~~Dvtd~~~ 137 (422)
T 3s8m_A 60 GPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAA--GLYSKSINGDAFSDAA 137 (422)
T ss_dssp SCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHT--TCCEEEEESCTTSHHH
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHHhc--CCcEEEEEecCCCHHH
Confidence 378999999999999999999999 99999999997665432 11221111 2468889999999988
Q ss_pred HHHHhc--------CCcEeEEecccC---------------C------------------------CCCCCccchhhhhH
Q 023515 75 FDSIVD--------GCDGVCHTASPF---------------Y------------------------HDAKDPQVELLDPA 107 (281)
Q Consensus 75 ~~~~~~--------~~d~Vih~a~~~---------------~------------------------~~~~~~~~~~~~~n 107 (281)
++++++ ++|++|||||.. . +...+.|+..+++|
T Consensus 138 v~~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~v~Vn 217 (422)
T 3s8m_A 138 RAQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITVM 217 (422)
T ss_dssp HHHHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHHHHHhh
Confidence 776653 579999999752 0 11233455677777
Q ss_pred HHHHH-HHHHHhhhC-C--CccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHH
Q 023515 108 VKGTL-NVLNSCAKF-P--SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAK 183 (281)
Q Consensus 108 ~~~~~-~l~~~~~~~-~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~ 183 (281)
..++. .+++++... + +..++|++||+.+..+.+ . .....|++||.+.+.+.+.++.
T Consensus 218 ~~~~~~~~~~a~~~~~m~~~gG~IVniSSi~g~~~~p-----------------~---~~~~aY~ASKaAl~~lTrsLA~ 277 (422)
T 3s8m_A 218 GGQDWELWIDALEGAGVLADGARSVAFSYIGTEITWP-----------------I---YWHGALGKAKVDLDRTAQRLNA 277 (422)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEEEEEEEECCCGGGHH-----------------H---HTSHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhhCCCEEEEEeCchhhccCC-----------------C---ccchHHHHHHHHHHHHHHHHHH
Confidence 77665 666666542 1 235899999987653211 0 0013499999999999999987
Q ss_pred hc---CCcEEEEcCCcccCCCCCCCCCccHH---HHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCC
Q 023515 184 EK---SIDLVTINPAMVIGPLLQPTLNTSAA---AVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP 247 (281)
Q Consensus 184 ~~---g~~~~~irp~~v~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~ 247 (281)
++ |+++++|.||.|.++..... ..... ...+.++ .+..++||++++.+++...
T Consensus 278 Ela~~GIRVNaVaPG~i~T~~~~~i-p~~~~~~~~~~~~m~----------r~G~pEdva~~v~~L~sd~ 336 (422)
T 3s8m_A 278 RLAKHGGGANVAVLKSVVTQASAAI-PVMPLYISMVYKIMK----------EKGLHEGTIEQLDRLFRER 336 (422)
T ss_dssp HHHTTTCEEEEEEECCCCCTTGGGS-THHHHHHHHHHHHHH----------HTTCCCCHHHHHHHHHHHT
T ss_pred HhCccCEEEEEEEcCCCcChhhhcC-CCChHHHHHHHhhhc----------CCcChHHHHHHHHHHhcch
Confidence 64 89999999999998763321 11111 1111222 1447899999999998643
|
| >4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-19 Score=155.96 Aligned_cols=215 Identities=9% Similarity=-0.080 Sum_probs=144.3
Q ss_pred cCCCeEEEeCCchHHHHH--HHHHHHHCCCEEEEEEcCCCCcc------------hhhhhhhccCCCCcEEEEEcCCCCc
Q 023515 7 AAGKVVCVTGASGYIASW--LVKLLLSRGYTVKASVRDPNDPK------------KTRHLLALDGASERLQLFKANLLEE 72 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~--l~~~L~~~g~~V~~~~r~~~~~~------------~~~~~~~~~~~~~~~~~~~~D~~~~ 72 (281)
..+|++|||||+++||++ +++.|.++|++|++++|+..... .+..+.... ...+.++++|++|.
T Consensus 58 ~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~Dvtd~ 135 (418)
T 4eue_A 58 RGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKK--GLVAKNFIEDAFSN 135 (418)
T ss_dssp CCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHT--TCCEEEEESCTTCH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHHHHHHc--CCcEEEEEeeCCCH
Confidence 358999999999999999 99999999999999999765432 222221111 24688999999999
Q ss_pred CcHHHHhc-------CCcEeEEecccCC---------------------------------------CCCCCccchhhhh
Q 023515 73 GSFDSIVD-------GCDGVCHTASPFY---------------------------------------HDAKDPQVELLDP 106 (281)
Q Consensus 73 ~~~~~~~~-------~~d~Vih~a~~~~---------------------------------------~~~~~~~~~~~~~ 106 (281)
++++++++ ++|++|||||... +...+.|+..+++
T Consensus 136 ~~v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~~~v 215 (418)
T 4eue_A 136 ETKDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEETRKV 215 (418)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHH
Confidence 88877765 6899999998630 1122335566666
Q ss_pred HHHHHH-HHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHH
Q 023515 107 AVKGTL-NVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFA 182 (281)
Q Consensus 107 n~~~~~-~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~ 182 (281)
|..+.. .+++++...+ +..++|++||+++..+.+.. ....|+++|.+.+.+++.++
T Consensus 216 n~~~~~~~~~~~l~~~~~~~~gg~IV~iSSi~~~~~~p~~--------------------~~~aY~ASKaAL~~ltrsLA 275 (418)
T 4eue_A 216 MGGEDWQEWCEELLYEDCFSDKATTIAYSYIGSPRTYKIY--------------------REGTIGIAKKDLEDKAKLIN 275 (418)
T ss_dssp HSSHHHHHHHHHHHHTTCEEEEEEEEEEECCCCGGGTTTT--------------------TTSHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhcCCcEEEEEeCchhcCCCCcc--------------------ccHHHHHHHHHHHHHHHHHH
Confidence 766555 5566655431 23579999998665422100 01459999999999999988
Q ss_pred Hh----cCCcEEEEcCCcccCCCCCCCCCcc--HHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCCCCccE
Q 023515 183 KE----KSIDLVTINPAMVIGPLLQPTLNTS--AAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPSANGRY 253 (281)
Q Consensus 183 ~~----~g~~~~~irp~~v~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~~~g~~ 253 (281)
.+ .|++++++.||.|.++......... ...+.+.++. ...++|+++++.+++...-.+|.+
T Consensus 276 ~ELa~~~GIrVN~V~PG~v~T~~s~~ip~~p~y~~~~~~~mk~----------~G~~E~v~e~~~~L~sd~~~~g~~ 342 (418)
T 4eue_A 276 EKLNRVIGGRAFVSVNKALVTKASAYIPTFPLYAAILYKVMKE----------KNIHENCIMQIERMFSEKIYSNEK 342 (418)
T ss_dssp HHHHHHHSCEEEEEECCCCCCHHHHTSTTHHHHHHHHHHHHHH----------TTCCCCHHHHHHHHHHHTTSSSSC
T ss_pred HHhCCccCeEEEEEECCcCcChhhhcCCCCcHHHHHHHHHHhh----------cCChHHHHHHHHHHhhccccCCCc
Confidence 75 5799999999999886422111110 1111222221 336889999999998765444544
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3e-19 Score=176.43 Aligned_cols=207 Identities=13% Similarity=0.076 Sum_probs=145.2
Q ss_pred ccCCCeEEEeCCchH-HHHHHHHHHHHCCCEEEEEE-cCCCCcchhhhhh-h-ccCCCCcEEEEEcCCCCcCcHHHHhc-
Q 023515 6 AAAGKVVCVTGASGY-IASWLVKLLLSRGYTVKASV-RDPNDPKKTRHLL-A-LDGASERLQLFKANLLEEGSFDSIVD- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~-iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~~~-~-~~~~~~~~~~~~~D~~~~~~~~~~~~- 80 (281)
.+++|++|||||+|+ ||+++++.|+++|++|++++ |+..+...+.... . ......++.++.+|++|.++++++++
T Consensus 672 ~l~gKvaLVTGASsGgIG~aIA~~La~~GA~Vvl~~~R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~sV~alv~~ 751 (1887)
T 2uv8_A 672 TFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEF 751 (1887)
T ss_dssp CCTTCEEEEESCCSSSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHHH
Confidence 366899999999998 99999999999999999985 5443332221111 1 11112478999999999988887763
Q ss_pred ------------CCcEeEEecccCCCC------C--CCccchhhhhHHHHHHHHHHHhh--hCC---CccEEEEecccee
Q 023515 81 ------------GCDGVCHTASPFYHD------A--KDPQVELLDPAVKGTLNVLNSCA--KFP---SIKRVVLTSSMAA 135 (281)
Q Consensus 81 ------------~~d~Vih~a~~~~~~------~--~~~~~~~~~~n~~~~~~l~~~~~--~~~---~~~~~v~~SS~~~ 135 (281)
++|+||||||..... . .+.|+..+++|+.++.+++++++ +.+ +.++||++||..+
T Consensus 752 i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~~G~IVnISS~ag 831 (1887)
T 2uv8_A 752 IYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHG 831 (1887)
T ss_dssp HHSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCCEEEEEEECSCTT
T ss_pred HHHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCCCEEEEEcChHh
Confidence 489999999974321 1 24467899999999999999884 322 2368999999876
Q ss_pred eecCCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHH-HHHHHHhcC--CcEEEEcCCcccC-CCCCCCCCccHH
Q 023515 136 VLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDA-AWKFAKEKS--IDLVTINPAMVIG-PLLQPTLNTSAA 211 (281)
Q Consensus 136 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~-~~~~~~~~g--~~~~~irp~~v~g-~~~~~~~~~~~~ 211 (281)
..+. ...|+.||++.+.+ .+.++++++ +++++|.||.+.| +..... ...
T Consensus 832 ~~gg------------------------~~aYaASKAAL~~Lttr~lA~ela~~IrVNaV~PG~V~tT~m~~~~-~~~-- 884 (1887)
T 2uv8_A 832 TFGG------------------------DGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGLMSAN-NII-- 884 (1887)
T ss_dssp CSSC------------------------BTTHHHHHHHGGGHHHHHHHSSCTTTEEEEEEEECCEECC-----C-CTT--
T ss_pred ccCC------------------------CchHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEecccccccccccc-hhH--
Confidence 5420 12499999999998 777766554 8999999999984 432211 111
Q ss_pred HHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCC
Q 023515 212 AVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP 247 (281)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~ 247 (281)
....... ...+..++|+|.++++++...
T Consensus 885 --~~~~~~~------plr~~sPEEVA~avlfLaSd~ 912 (1887)
T 2uv8_A 885 --AEGIEKM------GVRTFSQKEMAFNLLGLLTPE 912 (1887)
T ss_dssp --HHHHHTT------SCCCEEHHHHHHHHHGGGSHH
T ss_pred --HHHHHhc------CCCCCCHHHHHHHHHHHhCCC
Confidence 1111211 113569999999999999765
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.5e-19 Score=172.13 Aligned_cols=206 Identities=14% Similarity=0.087 Sum_probs=143.8
Q ss_pred cCCCeEEEeCCchH-HHHHHHHHHHHCCCEEEEEE-cCCCCcchhhhhh-hc-cCCCCcEEEEEcCCCCcCcHHHHhc--
Q 023515 7 AAGKVVCVTGASGY-IASWLVKLLLSRGYTVKASV-RDPNDPKKTRHLL-AL-DGASERLQLFKANLLEEGSFDSIVD-- 80 (281)
Q Consensus 7 ~~~~~ilItGatG~-iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~~~-~~-~~~~~~~~~~~~D~~~~~~~~~~~~-- 80 (281)
+++|++|||||+|+ ||+++++.|+++|++|++++ |+.++...+.+.. .. .....++.++.+|++|.++++++++
T Consensus 474 L~GKvALVTGASgGGIGrAIAr~LA~~GA~VVL~~~R~~e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~esVeaLVe~I 553 (1688)
T 2pff_A 474 FKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEFI 553 (1688)
T ss_dssp CCSCCEEECSCSSSSTHHHHHHHHHHHTCEEEEEESSCSTTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTHHHHHHHHH
T ss_pred cCCCEEEEECCChHHHHHHHHHHHHHCcCEEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHHHHHHHHHH
Confidence 56889999999998 99999999999999999984 5554443322221 11 1113468999999999999888763
Q ss_pred -----------CCcEeEEecccCCCC------C--CCccchhhhhHHHHHHHHHHHh--hhCC---CccEEEEeccceee
Q 023515 81 -----------GCDGVCHTASPFYHD------A--KDPQVELLDPAVKGTLNVLNSC--AKFP---SIKRVVLTSSMAAV 136 (281)
Q Consensus 81 -----------~~d~Vih~a~~~~~~------~--~~~~~~~~~~n~~~~~~l~~~~--~~~~---~~~~~v~~SS~~~~ 136 (281)
++|+||||||..... . .+.|+..+++|+.++.++++++ .+.+ +.++||++||..+.
T Consensus 554 ~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krggGrIVnISSiAG~ 633 (1688)
T 2pff_A 554 YDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHGT 633 (1688)
T ss_dssp HSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSCEEECCCCCSCTTT
T ss_pred HHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCCCCEEEEEEChHhc
Confidence 489999999964321 1 2346789999999999999988 3332 23589999998665
Q ss_pred ecCCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHH-HHHHHHhcC--CcEEEEcCCcccC-CCCCCCCCccHHH
Q 023515 137 LNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDA-AWKFAKEKS--IDLVTINPAMVIG-PLLQPTLNTSAAA 212 (281)
Q Consensus 137 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~-~~~~~~~~g--~~~~~irp~~v~g-~~~~~~~~~~~~~ 212 (281)
.+. ...|+.||++.+.+ .+.++++++ +++++|.||.+.| +..... ...
T Consensus 634 ~Gg------------------------~saYaASKAAL~aLttrsLAeEla~~IRVNaVaPG~V~TT~M~~~~-e~~--- 685 (1688)
T 2pff_A 634 FGG------------------------DGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGLMSAN-NII--- 685 (1688)
T ss_dssp SSC------------------------BTTHHHHHHHHTHHHHHTTTSSCTTTEECCCCCCCCCCCCSSSCTT-TTC---
T ss_pred cCC------------------------chHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEECcCcCCcccCCc-hHH---
Confidence 420 13499999999998 454544443 8889999999984 432210 000
Q ss_pred HHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCC
Q 023515 213 VLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP 247 (281)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~ 247 (281)
..........+..++|+|+++++++...
T Consensus 686 -------~~~l~~iplR~~sPEEVA~aIlFLaSd~ 713 (1688)
T 2pff_A 686 -------AEGIEKMGVRTFSQKEMAFNLLGLLTPE 713 (1688)
T ss_dssp -------STTTSSSSCCCCCCCTTHHHHHHHTSTT
T ss_pred -------HHHHHhCCCCCCCHHHHHHHHHHHhCCC
Confidence 0000111113458999999999999865
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=99.78 E-value=7e-19 Score=165.56 Aligned_cols=207 Identities=17% Similarity=0.171 Sum_probs=150.8
Q ss_pred CCCeEEEeCCchHHHHHHHHHHH-HCCC-EEEEEEcCCCCcchhhhhhh-ccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 8 AGKVVCVTGASGYIASWLVKLLL-SRGY-TVKASVRDPNDPKKTRHLLA-LDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~-~~g~-~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
+++++|||||+|+||+++++.|+ ++|. +|++++|+..+.+...+... +.....++.++.+|++|.+++.++++
T Consensus 529 ~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~G~~v~~~~~Dvsd~~~v~~~~~~~~~ 608 (795)
T 3slk_A 529 AAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAYGAEVSLQACDVADRETLAKVLASIPD 608 (795)
T ss_dssp TTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCT
T ss_pred cccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHH
Confidence 47899999999999999999999 7897 69999998443332222111 11123579999999999999988876
Q ss_pred --CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCC
Q 023515 81 --GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (281)
Q Consensus 81 --~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~ 153 (281)
++|+||||||... ....+.|+..+++|+.|+.++.+++.+.+ +||++||+.+..+.+
T Consensus 609 ~~~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~~~l---~iV~~SS~ag~~g~~------------- 672 (795)
T 3slk_A 609 EHPLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELIDPDV---ALVLFSSVSGVLGSG------------- 672 (795)
T ss_dssp TSCEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSCTTS---EEEEEEETHHHHTCS-------------
T ss_pred hCCCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHhhCC---EEEEEccHHhcCCCC-------------
Confidence 4799999999643 23345678999999999999999996654 899999998877432
Q ss_pred CCChhhhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeH
Q 023515 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNV 233 (281)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 233 (281)
.+..|+++|...+.+.+++.. .|+++++|.||.+.+++... .........+.. .....+..
T Consensus 673 ---------g~~~YaAaka~~~alA~~~~~-~Gi~v~sI~pG~v~t~g~~~---~~~~~~~~~~~~------~g~~~l~~ 733 (795)
T 3slk_A 673 ---------GQGNYAAANSFLDALAQQRQS-RGLPTRSLAWGPWAEHGMAS---TLREAEQDRLAR------SGLLPIST 733 (795)
T ss_dssp ---------SCHHHHHHHHHHHHHHHHHHH-TTCCEEEEEECCCSCCCHHH---HHHHHHHHHHHH------TTBCCCCH
T ss_pred ---------CCHHHHHHHHHHHHHHHHHHH-cCCeEEEEECCeECcchhhc---cccHHHHHHHHh------cCCCCCCH
Confidence 134599999999988887754 69999999999987654210 001111111111 12345788
Q ss_pred HHHHHHHHHhhcCCCC
Q 023515 234 KDVANAHIQAFEVPSA 249 (281)
Q Consensus 234 ~D~a~~i~~~~~~~~~ 249 (281)
++....+..++..+..
T Consensus 734 ~e~~~~~~~~l~~~~~ 749 (795)
T 3slk_A 734 EEGLSQFDAACGGAHT 749 (795)
T ss_dssp HHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHHHhCCCc
Confidence 9999999988876543
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4e-18 Score=168.27 Aligned_cols=206 Identities=14% Similarity=0.071 Sum_probs=144.3
Q ss_pred cCCCeEEEeCCchH-HHHHHHHHHHHCCCEEEEEEcCC-CCcchh-hhhhh-ccCCCCcEEEEEcCCCCcCcHHHHhc--
Q 023515 7 AAGKVVCVTGASGY-IASWLVKLLLSRGYTVKASVRDP-NDPKKT-RHLLA-LDGASERLQLFKANLLEEGSFDSIVD-- 80 (281)
Q Consensus 7 ~~~~~ilItGatG~-iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~-~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~-- 80 (281)
+++|++|||||+|+ ||+++++.|+++|++|++++++. ...... ..+.. ......++.++.+|++|.+++.++++
T Consensus 650 L~gKvaLVTGASgGgIG~aIAr~LA~~GA~VVl~~~R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~esV~alv~~i 729 (1878)
T 2uv9_A 650 FQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQDVEALVNYI 729 (1878)
T ss_dssp CTTCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCChHHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 56899999999999 99999999999999999986543 222221 11111 11112478999999999998887763
Q ss_pred ---------CCcEeEEecccCCCC---C-----CCccchhhhhHHHHHHHHHHHh--hhCC---CccEEEEeccceeeec
Q 023515 81 ---------GCDGVCHTASPFYHD---A-----KDPQVELLDPAVKGTLNVLNSC--AKFP---SIKRVVLTSSMAAVLN 138 (281)
Q Consensus 81 ---------~~d~Vih~a~~~~~~---~-----~~~~~~~~~~n~~~~~~l~~~~--~~~~---~~~~~v~~SS~~~~~~ 138 (281)
++|+||||||..... . .+.|+..+++|+.++.++++++ .+.+ +.++||++||..+..+
T Consensus 730 ~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~G~IVnISS~ag~~g 809 (1878)
T 2uv9_A 730 YDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPAQVILPLSPNHGTFG 809 (1878)
T ss_dssp HCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCEEECCEECSCSSSSS
T ss_pred HHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCCCEEEEEcchhhccC
Confidence 489999999964321 1 2446789999999999998873 3332 2368999999876642
Q ss_pred CCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh-c--CCcEEEEcCCccc-CCCCCCCCCccHHHHH
Q 023515 139 TGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE-K--SIDLVTINPAMVI-GPLLQPTLNTSAAAVL 214 (281)
Q Consensus 139 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-~--g~~~~~irp~~v~-g~~~~~~~~~~~~~~~ 214 (281)
. ...|+.+|++.+.+++.+..+ + ++++++|.||.+. ++.... .....
T Consensus 810 g------------------------~~aYaASKAAL~aLt~~laAeEla~~IrVNaVaPG~V~gT~m~~~-----~~~~~ 860 (1878)
T 2uv9_A 810 N------------------------DGLYSESKLALETLFNRWYSESWGNYLTICGAVIGWTRGTGLMSA-----NNLVA 860 (1878)
T ss_dssp C------------------------CSSHHHHHHHHTTHHHHHHHSTTTTTEEEEEEEECCBCCTTSCSH-----HHHTH
T ss_pred C------------------------chHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEecceecCccccc-----chhhH
Confidence 1 124999999999998766543 2 3899999999998 554221 11112
Q ss_pred HHHhCCCCCCCCCccceeHHHHHHHHHHhhcCC
Q 023515 215 SLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP 247 (281)
Q Consensus 215 ~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~ 247 (281)
...... + ..+..++|+|.++++++...
T Consensus 861 ~~~~~~---p---lr~~sPeEVA~avlfLaSd~ 887 (1878)
T 2uv9_A 861 EGVEKL---G---VRTFSQQEMAFNLLGLMAPA 887 (1878)
T ss_dssp HHHHTT---T---CCCBCHHHHHHHHHHHHSHH
T ss_pred HHHHhc---C---CCCCCHHHHHHHHHHHhCCc
Confidence 222221 1 13458999999999998754
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-15 Score=156.39 Aligned_cols=228 Identities=19% Similarity=0.139 Sum_probs=147.6
Q ss_pred cCCCeEEEeCCchH-HHHHHHHHHHHCCCEEEEEEcCCCC-----cchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc
Q 023515 7 AAGKVVCVTGASGY-IASWLVKLLLSRGYTVKASVRDPND-----PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (281)
Q Consensus 7 ~~~~~ilItGatG~-iG~~l~~~L~~~g~~V~~~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 80 (281)
+++|++|||||+++ ||+++++.|+++|.+|++++|+.+. ...+.... ......+..+++|++|.++++++++
T Consensus 2134 l~gKvaLVTGAs~GsIG~AiA~~La~~GA~Vvi~~r~~~~~~~~~~~~l~~~l--~~~G~~~~~v~~Dvtd~~~v~~lv~ 2211 (3089)
T 3zen_D 2134 XXDEVAVVTGASKGSIAASVVGQLLDGGATVIATTSRLDDDRLAFYKQLYRDH--ARFDATLWVVPANMASYSDIDKLVE 2211 (3089)
T ss_dssp CCCCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESCCSHHHHHHHHHHHHHH--CCTTCEEEEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHHCCCEEEEEeCChhhhhhHHHHHHHHHH--hhcCCeEEEEEecCCCHHHHHHHHH
Confidence 67899999999999 9999999999999999999998764 22222221 1122468889999999988877643
Q ss_pred -----------CCcEeEEeccc----CC------CCCCCccchh----hhhHHHHHHHHHHHhhhCC---Ccc---EEE-
Q 023515 81 -----------GCDGVCHTASP----FY------HDAKDPQVEL----LDPAVKGTLNVLNSCAKFP---SIK---RVV- 128 (281)
Q Consensus 81 -----------~~d~Vih~a~~----~~------~~~~~~~~~~----~~~n~~~~~~l~~~~~~~~---~~~---~~v- 128 (281)
++|++|||||. .. ....+.|+.. +++|+.+++.+++.+.+.+ +.. .+|
T Consensus 2212 ~i~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~~~~~g~~~~ii~ 2291 (3089)
T 3zen_D 2212 WVGTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAERDIASRLHVVL 2291 (3089)
T ss_dssp HHTSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCCEEEEE
T ss_pred HHHhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEE
Confidence 47999999996 11 1112234333 8999999999998887642 111 222
Q ss_pred EeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh--c--CCcEEEEcCCcccCCCCCC
Q 023515 129 LTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE--K--SIDLVTINPAMVIGPLLQP 204 (281)
Q Consensus 129 ~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~--~--g~~~~~irp~~v~g~~~~~ 204 (281)
..|+.....+ ....|+.||.+.+.+++.++.+ + +++++.+.||.|.+.....
T Consensus 2292 ~~ss~~g~~g------------------------~~~aYsASKaAl~~LtrslA~E~~~a~~IrVn~v~PG~v~tT~l~~ 2347 (3089)
T 3zen_D 2292 PGSPNRGMFG------------------------GDGAYGEAKSALDALENRWSAEKSWAERVSLAHALIGWTKGTGLMG 2347 (3089)
T ss_dssp EECSSTTSCS------------------------SCSSHHHHGGGHHHHHHHHHHCSTTTTTEEEEEEECCCEECSTTTT
T ss_pred ECCcccccCC------------------------CchHHHHHHHHHHHHHHHHHhccccCCCeEEEEEeecccCCCcccc
Confidence 2222111110 0124999999999999999988 4 5788999999998443221
Q ss_pred CCCccHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCCC---Cc-cEE--Eec---C-CCCHHHHHHHHH
Q 023515 205 TLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPSA---NG-RYC--LVE---R-VSHYSEIVNIIR 270 (281)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~~---~g-~~~--~~~---~-~~t~~e~~~~i~ 270 (281)
..... ....... ......++|+|.++++++..... .+ ... +.| . ...+.++...+.
T Consensus 2348 ~~~~~----~~~~~~~------~~r~~~PeEIA~avlfLaS~~a~~~~~~~p~~vdl~GG~~~~~~~~~~~~~~~~ 2413 (3089)
T 3zen_D 2348 QNDAI----VSAVEEA------GVTTYTTDEMAAMLLDLCTVETKVAAAGAPVKVDLTGGLGDIKIDMAELAAKAR 2413 (3089)
T ss_dssp TTTTT----HHHHGGG------SCBCEEHHHHHHHHHHTTSHHHHHHHHHSCEEEECSBSCSSCCCCHHHHTHHHH
T ss_pred cchhH----HHHHHhc------CCCCCCHHHHHHHHHHHhChhhhhHhcCCeEEEEcCCCcCcCCCCHHHHHHHHH
Confidence 11111 1111111 11233899999999999874322 22 122 223 2 357787776553
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.7e-15 Score=154.14 Aligned_cols=168 Identities=14% Similarity=0.104 Sum_probs=122.5
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCE-EEEEEcCCCCcchhhhhh-hccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYT-VKASVRDPNDPKKTRHLL-ALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+|+++||||+|+||+++++.|+++|.+ |++++|+..+.+...... .......++.++.+|++|.++++++++
T Consensus 1883 ~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvsd~~~v~~~~~~~~~~ 1962 (2512)
T 2vz8_A 1883 PHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQGVQVLVSTSNASSLDGARSLITEATQL 1962 (2512)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCCEEEEECSSCCCSHHHHHHHHHHHHTTCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHhc
Confidence 4789999999999999999999999986 788888876543222111 111112478899999999988887765
Q ss_pred -CCcEeEEecccC-----CCCCCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCCCCCeeeecCC
Q 023515 81 -GCDGVCHTASPF-----YHDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (281)
Q Consensus 81 -~~d~Vih~a~~~-----~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~ 153 (281)
++|+||||||.. .+...+.|+..+++|+.|+.++.+++.+.+ ..++||++||..+..+.+
T Consensus 1963 g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~g~iV~iSS~ag~~g~~------------- 2029 (2512)
T 2vz8_A 1963 GPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPELDYFVIFSSVSCGRGNA------------- 2029 (2512)
T ss_dssp SCEEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCTTCCEEEEECCHHHHTTCT-------------
T ss_pred CCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCEEEEecchhhcCCCC-------------
Confidence 689999999863 233456788999999999999998887642 347999999988765332
Q ss_pred CCChhhhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCccc
Q 023515 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVI 198 (281)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~ 198 (281)
.+..|+++|.+.+.+++.... .|++...+..+.+-
T Consensus 2030 ---------g~~~Y~aaKaal~~l~~~rr~-~Gl~~~a~~~g~~~ 2064 (2512)
T 2vz8_A 2030 ---------GQANYGFANSAMERICEKRRH-DGLPGLAVQWGAIG 2064 (2512)
T ss_dssp ---------TCHHHHHHHHHHHHHHHHHHH-TTSCCCEEEECCBC
T ss_pred ---------CcHHHHHHHHHHHHHHHHHHH-CCCcEEEEEccCcC
Confidence 124599999999999987754 48998888877653
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=99.38 E-value=7.9e-13 Score=95.06 Aligned_cols=95 Identities=20% Similarity=0.226 Sum_probs=75.5
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
++++|+|+|+ |++|+++++.|+++| ++|++++|++++...+. ..++.++.+|+.+.+.+.++++++|+||
T Consensus 4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~--------~~~~~~~~~d~~~~~~~~~~~~~~d~vi 74 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN--------RMGVATKQVDAKDEAGLAKALGGFDAVI 74 (118)
T ss_dssp TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH--------TTTCEEEECCTTCHHHHHHHTTTCSEEE
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH--------hCCCcEEEecCCCHHHHHHHHcCCCEEE
Confidence 3678999999 999999999999999 99999999765443322 1357788999999999999999999999
Q ss_pred EecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEE
Q 023515 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVL 129 (281)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~ 129 (281)
|+++.. ....++++|.+. +++.|..
T Consensus 75 ~~~~~~-----------------~~~~~~~~~~~~-g~~~~~~ 99 (118)
T 3ic5_A 75 SAAPFF-----------------LTPIIAKAAKAA-GAHYFDL 99 (118)
T ss_dssp ECSCGG-----------------GHHHHHHHHHHT-TCEEECC
T ss_pred ECCCch-----------------hhHHHHHHHHHh-CCCEEEe
Confidence 998421 136788888887 6654443
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=99.32 E-value=7e-13 Score=112.63 Aligned_cols=173 Identities=13% Similarity=0.023 Sum_probs=114.5
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCC-------EEEEEEcC----CCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHH
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGY-------TVKASVRD----PNDPKKTRHLLALDGASERLQLFKANLLEEGSFDS 77 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~-------~V~~~~r~----~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 77 (281)
.+||+||||+|+||++++..|+.+|. +|+++++. .++............ ..+ ..|+....++.+
T Consensus 5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~--~~~---~~~i~~~~~~~~ 79 (329)
T 1b8p_A 5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCA--FPL---LAGMTAHADPMT 79 (329)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTT--CTT---EEEEEEESSHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhc--ccc---cCcEEEecCcHH
Confidence 46899999999999999999999885 78888876 221211011111100 011 246666677888
Q ss_pred HhcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCCCCCeeeecCCCCC
Q 023515 78 IVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSD 156 (281)
Q Consensus 78 ~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~ 156 (281)
+++++|+|||+||........ ..++++.|+.++.++++.+.++. ...+||++|...... .....+..+-.
T Consensus 80 al~~aD~Vi~~ag~~~~~g~~-r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~--------t~~~~~~~~~~ 150 (329)
T 1b8p_A 80 AFKDADVALLVGARPRGPGME-RKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTN--------AYIAMKSAPSL 150 (329)
T ss_dssp HTTTCSEEEECCCCCCCTTCC-HHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHH--------HHHHHHTCTTS
T ss_pred HhCCCCEEEEeCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHH--------HHHHHHHcCCC
Confidence 999999999999975543332 34788999999999999999973 344899998732110 00000000000
Q ss_pred hhhhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCC
Q 023515 157 PEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGP 200 (281)
Q Consensus 157 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~ 200 (281)
| +...|+.++....++...+++..|++...++...|+|.
T Consensus 151 p-----~~~v~g~t~Ld~~r~~~~la~~lgv~~~~v~~~~v~G~ 189 (329)
T 1b8p_A 151 P-----AKNFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGN 189 (329)
T ss_dssp C-----GGGEEECCHHHHHHHHHHHHHHHTCCGGGEESCEEEBC
T ss_pred C-----HHHEEEeecHHHHHHHHHHHHHhCcCHHHceEEEEEec
Confidence 0 11348888888888888888888887777776667774
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=99.24 E-value=2.9e-11 Score=102.49 Aligned_cols=116 Identities=17% Similarity=0.124 Sum_probs=81.8
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+|||+||||+|++|..++..|+.+| ++|+++++++. ......+..... ...+.. +.+..++.++++++|+||
T Consensus 8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~-~~~~~dL~~~~~-~~~v~~----~~~t~d~~~al~gaDvVi 81 (326)
T 1smk_A 8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA-PGVTADISHMDT-GAVVRG----FLGQQQLEAALTGMDLII 81 (326)
T ss_dssp CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH-HHHHHHHHTSCS-SCEEEE----EESHHHHHHHHTTCSEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc-HhHHHHhhcccc-cceEEE----EeCCCCHHHHcCCCCEEE
Confidence 5689999999999999999999998 89999987764 111111111000 012222 223346778899999999
Q ss_pred EecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
|+|+....... ...++.+.|+.++.++++.+.+. ..+.+|+++|
T Consensus 82 ~~ag~~~~~g~-~r~dl~~~N~~~~~~i~~~i~~~-~p~~~viv~S 125 (326)
T 1smk_A 82 VPAGVPRKPGM-TRDDLFKINAGIVKTLCEGIAKC-CPRAIVNLIS 125 (326)
T ss_dssp ECCCCCCCSSC-CCSHHHHHHHHHHHHHHHHHHHH-CTTSEEEECC
T ss_pred EcCCcCCCCCC-CHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEEC
Confidence 99986543332 22377899999999999999998 5566777766
|
| >4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A | Back alignment and structure |
|---|
Probab=99.16 E-value=3e-10 Score=96.64 Aligned_cols=171 Identities=12% Similarity=-0.003 Sum_probs=107.3
Q ss_pred CCCeEEEeCCchHHHHHHHHHHH-HCCCEEEEEEcCCCCcchh------------hhhhhccCCCCcEEEEEcCCCCcCc
Q 023515 8 AGKVVCVTGASGYIASWLVKLLL-SRGYTVKASVRDPNDPKKT------------RHLLALDGASERLQLFKANLLEEGS 74 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~-~~g~~V~~~~r~~~~~~~~------------~~~~~~~~~~~~~~~~~~D~~~~~~ 74 (281)
..|++|||||+.+||.+.+..|+ ..|..|+++.+..+..+.. .+..+.. ......+.+|+++++.
T Consensus 49 ~pK~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~--G~~a~~i~~Dv~d~e~ 126 (401)
T 4ggo_A 49 APKNVLVLGCSNGYGLASRITAAFGYGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKRE--GLYSVTIDGDAFSDEI 126 (401)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHH--TCCEEEEESCTTSHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecCCcccccccccccchhHHHHHHHHHHc--CCCceeEeCCCCCHHH
Confidence 46899999999999999999998 6789999998866543321 1111111 2578899999999988
Q ss_pred HHHHhc-------CCcEeEEecccCCCCCC----------Cc----------------c-----chhhhhHHHHHHHH--
Q 023515 75 FDSIVD-------GCDGVCHTASPFYHDAK----------DP----------------Q-----VELLDPAVKGTLNV-- 114 (281)
Q Consensus 75 ~~~~~~-------~~d~Vih~a~~~~~~~~----------~~----------------~-----~~~~~~n~~~~~~l-- 114 (281)
++++++ ++|++||++|....... ++ + +..-+.++.+|...
T Consensus 127 i~~vi~~i~~~~G~IDiLVhS~A~~~r~~p~~g~~~~S~LKpi~~~~~~~~ldt~~~~i~~~~l~pat~eeie~T~~vMg 206 (401)
T 4ggo_A 127 KAQVIEEAKKKGIKFDLIVYSLASPVRTDPDTGIMHKSVLKPFGKTFTGKTVDPFTGELKEISAEPANDEEAAATVKVMG 206 (401)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEECTTTCCEEEEEECCCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCCCEEEEecccccccCCCCCceeeeeecccccccccccccccccccccccccCCcHHHHHHHHHHHh
Confidence 888775 78999999985321100 00 0 00111122333321
Q ss_pred -------HHHhhhC--C-CccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh
Q 023515 115 -------LNSCAKF--P-SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE 184 (281)
Q Consensus 115 -------~~~~~~~--~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~ 184 (281)
..+.... + ...++|-+|+.+.-...+ . -....+|.+|.+.|..++.++.+
T Consensus 207 ~s~~s~w~~al~~a~lla~G~siva~SYiGse~t~P-----------------~---Y~~G~mG~AKaaLEa~~r~La~e 266 (401)
T 4ggo_A 207 GEDWERWIKQLSKEGLLEEGCITLAYSYIGPEATQA-----------------L---YRKGTIGKAKEHLEATAHRLNKE 266 (401)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEEEEEEECCCCGGGHH-----------------H---HTTSHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhcccCCceEEEEeccCcceeec-----------------C---CCccHHHHHHHHHHHHHHHHHHh
Confidence 2222222 1 235788888764421000 0 00113799999999999999988
Q ss_pred c-CCcEEEEcCCcccCC
Q 023515 185 K-SIDLVTINPAMVIGP 200 (281)
Q Consensus 185 ~-g~~~~~irp~~v~g~ 200 (281)
. ++++.++-++.+-+.
T Consensus 267 L~~~~a~v~v~~a~vT~ 283 (401)
T 4ggo_A 267 NPSIRAFVSVNKGLVTR 283 (401)
T ss_dssp CTTEEEEEEECCCCCCT
T ss_pred cCCCcEEEEEcCccccc
Confidence 6 566777777776654
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.9e-10 Score=96.96 Aligned_cols=168 Identities=17% Similarity=0.135 Sum_probs=100.2
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCC--EEEEEEc--CCCCcchhh-hhhh-ccCCCCcEEEEEcCCCCc-CcHHHHhcCC
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGY--TVKASVR--DPNDPKKTR-HLLA-LDGASERLQLFKANLLEE-GSFDSIVDGC 82 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~r--~~~~~~~~~-~~~~-~~~~~~~~~~~~~D~~~~-~~~~~~~~~~ 82 (281)
|||+||||+|++|++++..|+.+|. ++.++++ +..+.+... .+.. ......++ ++++. +++.++++++
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~-----~i~~~~d~l~~al~ga 75 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDA-----NIYVESDENLRIIDES 75 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCC-----EEEEEETTCGGGGTTC
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCe-----EEEeCCcchHHHhCCC
Confidence 4799999999999999999998884 6777877 332111100 0110 01100112 22221 2356778999
Q ss_pred cEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhcc
Q 023515 83 DGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQ 162 (281)
Q Consensus 83 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 162 (281)
|+|||+||........ ...+++.|+.++++++++++++ . +.+|+++|-=+.- .......... .+
T Consensus 76 D~Vi~~Ag~~~~~g~~-r~dl~~~N~~i~~~i~~~i~~~-~-~~~vlv~SNPv~~------~t~~~~k~~~-------~p 139 (313)
T 1hye_A 76 DVVIITSGVPRKEGMS-RMDLAKTNAKIVGKYAKKIAEI-C-DTKIFVITNPVDV------MTYKALVDSK-------FE 139 (313)
T ss_dssp SEEEECCSCCCCTTCC-HHHHHHHHHHHHHHHHHHHHHH-C-CCEEEECSSSHHH------HHHHHHHHHC-------CC
T ss_pred CEEEECCCCCCCCCCc-HHHHHHHHHHHHHHHHHHHHHh-C-CeEEEEecCcHHH------HHHHHHHhhC-------cC
Confidence 9999999975543332 3478899999999999999998 5 6677776631110 0000000000 00
Q ss_pred CCchhhh-hHHHHHHHHHHHHHhcCCcEEEEcCCcccC
Q 023515 163 SELWYPL-SKTLAEDAAWKFAKEKSIDLVTINPAMVIG 199 (281)
Q Consensus 163 ~~~~Y~~-sK~~~e~~~~~~~~~~g~~~~~irp~~v~g 199 (281)
+...+|. +.....++...+++..|++...++. .++|
T Consensus 140 ~~rviG~gt~LD~~r~~~~la~~lgv~~~~v~~-~v~G 176 (313)
T 1hye_A 140 RNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRT-RIIG 176 (313)
T ss_dssp TTSEEECTTHHHHHHHHHHHHHHHTCCGGGEEC-CEEE
T ss_pred hhcEEEeCccHHHHHHHHHHHHHhCcCHHHeEE-EEee
Confidence 1234777 6766777777777777765444443 3444
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=3.4e-11 Score=100.47 Aligned_cols=82 Identities=17% Similarity=0.170 Sum_probs=66.2
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+++++++||||+|++|+++++.|+++|++|++++|+.++.+.+.+..... .++.++.+|+++.+++.++++.+|+||
T Consensus 117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~DvlV 193 (287)
T 1lu9_A 117 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKR---FKVNVTAAETADDASRAEAVKGAHFVF 193 (287)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH---HTCCCEEEECCSHHHHHHHTTTCSEEE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhc---CCcEEEEecCCCHHHHHHHHHhCCEEE
Confidence 46899999999999999999999999999999999865544433322111 135677899999999999999999999
Q ss_pred Eeccc
Q 023515 87 HTASP 91 (281)
Q Consensus 87 h~a~~ 91 (281)
|+|+.
T Consensus 194 n~ag~ 198 (287)
T 1lu9_A 194 TAGAI 198 (287)
T ss_dssp ECCCT
T ss_pred ECCCc
Confidence 99974
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=2.8e-10 Score=84.49 Aligned_cols=102 Identities=17% Similarity=0.107 Sum_probs=71.5
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHH-hcCCcEe
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI-VDGCDGV 85 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~V 85 (281)
+++++|+|+|+ |.+|+.+++.|.+.|++|++++|++++...+.. .....+.+|.++.+.+.++ ++++|+|
T Consensus 4 ~~~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~--------~~~~~~~~d~~~~~~l~~~~~~~~d~v 74 (144)
T 2hmt_A 4 IKNKQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS--------YATHAVIANATEENELLSLGIRNFEYV 74 (144)
T ss_dssp --CCSEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTT--------TCSEEEECCTTCHHHHHTTTGGGCSEE
T ss_pred CcCCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--------hCCEEEEeCCCCHHHHHhcCCCCCCEE
Confidence 45788999998 999999999999999999999987543322111 1346678999887777665 6789999
Q ss_pred EEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccc
Q 023515 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (281)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (281)
|++++. + .+.|. .+...+++. +.+++|..++.
T Consensus 75 i~~~~~-------~----~~~~~----~~~~~~~~~-~~~~ii~~~~~ 106 (144)
T 2hmt_A 75 IVAIGA-------N----IQAST----LTTLLLKEL-DIPNIWVKAQN 106 (144)
T ss_dssp EECCCS-------C----HHHHH----HHHHHHHHT-TCSEEEEECCS
T ss_pred EECCCC-------c----hHHHH----HHHHHHHHc-CCCeEEEEeCC
Confidence 998752 1 12232 355666776 55677766654
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=99.06 E-value=5.9e-10 Score=93.45 Aligned_cols=115 Identities=16% Similarity=0.054 Sum_probs=76.9
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCC--EEEEEEc--CCCCcchhhhhhhcc-CCCCcEEEEEcCCCCcCcHHHHhcCCcE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGY--TVKASVR--DPNDPKKTRHLLALD-GASERLQLFKANLLEEGSFDSIVDGCDG 84 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~r--~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~d~ 84 (281)
|||+||||+|++|++++..|+..|. ++.++++ ..++.+......... ....++.+.. + + .++++++|+
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~-~--~----~~a~~~aDv 73 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ-G--G----YEDTAGSDV 73 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE-C--C----GGGGTTCSE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEe-C--C----HHHhCCCCE
Confidence 4899999999999999999998874 6888877 432211111111100 0112233322 1 1 445789999
Q ss_pred eEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccc
Q 023515 85 VCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (281)
Q Consensus 85 Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (281)
|||+|+........ ..++++.|+.+++++++++.++ ..+.+|+++|-
T Consensus 74 Vi~~ag~~~~~g~~-r~dl~~~N~~i~~~i~~~i~~~-~p~~~viv~SN 120 (303)
T 1o6z_A 74 VVITAGIPRQPGQT-RIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSN 120 (303)
T ss_dssp EEECCCCCCCTTCC-HHHHHHHHHHHHHHHHHHHHTT-CSCCEEEECCS
T ss_pred EEEcCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEeCC
Confidence 99999975543332 2377899999999999999998 66667777663
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.95 E-value=6.8e-10 Score=82.35 Aligned_cols=75 Identities=21% Similarity=0.198 Sum_probs=59.1
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHH-hcCCcEe
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI-VDGCDGV 85 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~V 85 (281)
++|++|+|+|+ |++|+++++.|.++|++|++++++++..+.+.. .++.++.+|.++++.+.++ ++++|+|
T Consensus 4 ~~~~~v~I~G~-G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~--------~~~~~~~gd~~~~~~l~~~~~~~~d~v 74 (141)
T 3llv_A 4 NGRYEYIVIGS-EAAGVGLVRELTAAGKKVLAVDKSKEKIELLED--------EGFDAVIADPTDESFYRSLDLEGVSAV 74 (141)
T ss_dssp --CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH--------TTCEEEECCTTCHHHHHHSCCTTCSEE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH--------CCCcEEECCCCCHHHHHhCCcccCCEE
Confidence 45778999997 999999999999999999999997654433222 2477899999998888775 4589999
Q ss_pred EEecc
Q 023515 86 CHTAS 90 (281)
Q Consensus 86 ih~a~ 90 (281)
|.+.+
T Consensus 75 i~~~~ 79 (141)
T 3llv_A 75 LITGS 79 (141)
T ss_dssp EECCS
T ss_pred EEecC
Confidence 97653
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1.2e-09 Score=96.59 Aligned_cols=108 Identities=17% Similarity=0.192 Sum_probs=77.0
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 87 (281)
++++|+|+| +|++|+++++.|++.|++|++++|+.++...+... -.++..+++|++|.+++.++++++|+|||
T Consensus 2 ~~k~VlViG-aG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~------~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn 74 (450)
T 1ff9_A 2 ATKSVLMLG-SGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAG------VQHSTPISLDVNDDAALDAEVAKHDLVIS 74 (450)
T ss_dssp CCCEEEEEC-CSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTT------CTTEEEEECCTTCHHHHHHHHTTSSEEEE
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHh------cCCceEEEeecCCHHHHHHHHcCCcEEEE
Confidence 478999998 79999999999999999999999976544332221 12477889999998889999999999999
Q ss_pred ecccCCCCCCCccchhhh--hH-------HHHHHHHHHHhhhCCCcc
Q 023515 88 TASPFYHDAKDPQVELLD--PA-------VKGTLNVLNSCAKFPSIK 125 (281)
Q Consensus 88 ~a~~~~~~~~~~~~~~~~--~n-------~~~~~~l~~~~~~~~~~~ 125 (281)
+++...... .....++ .| ...+.+++++|++. ++.
T Consensus 75 ~a~~~~~~~--i~~a~l~~g~~vvd~~~~~~~~~~l~~aA~~a-Gv~ 118 (450)
T 1ff9_A 75 LIPYTFHAT--VIKSAIRQKKHVVTTSYVSPAMMELDQAAKDA-GIT 118 (450)
T ss_dssp CCC--CHHH--HHHHHHHHTCEEEESSCCCHHHHHTHHHHHHT-TCE
T ss_pred CCccccchH--HHHHHHhCCCeEEEeecccHHHHHHHHHHHHC-CCe
Confidence 997532110 0001111 11 24678899999987 653
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=4.1e-08 Score=82.58 Aligned_cols=116 Identities=18% Similarity=0.149 Sum_probs=79.8
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 87 (281)
|||.|+||+|++|..++..|+..| .+|+++++++. ......+. ......++.... ...+++++++++|+||+
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~-~~~a~dL~-~~~~~~~l~~~~----~t~d~~~a~~~aDvVvi 74 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT-PGVAADLS-HIETRATVKGYL----GPEQLPDCLKGCDVVVI 74 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSH-HHHHHHHT-TSSSSCEEEEEE----SGGGHHHHHTTCSEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCcc-HHHHHHHh-ccCcCceEEEec----CCCCHHHHhCCCCEEEE
Confidence 479999999999999999999888 79999999861 11111111 110011222211 12357778899999999
Q ss_pred ecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 88 TASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 88 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
+|+......... .+.+..|+..+..+++.+.++....++|++|-
T Consensus 75 ~ag~~~~~g~~r-~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sN 118 (314)
T 1mld_A 75 PAGVPRKPGMTR-DDLFNTNATIVATLTAACAQHCPDAMICIISN 118 (314)
T ss_dssp CCSCCCCTTCCG-GGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred CCCcCCCCCCcH-HHHHHHHHHHHHHHHHHHHhhCCCeEEEEECC
Confidence 998755433333 37789999999999999998744457777654
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.81 E-value=1.8e-08 Score=74.16 Aligned_cols=98 Identities=12% Similarity=0.136 Sum_probs=67.6
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHH-hcCCcEeEE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI-VDGCDGVCH 87 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~Vih 87 (281)
+|+|+|+|+ |++|+.+++.|.+.|++|++++|+++....+... .++.++.+|..+.+.+.+. ++++|+||+
T Consensus 4 ~m~i~IiG~-G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~-------~~~~~~~~d~~~~~~l~~~~~~~~d~vi~ 75 (140)
T 1lss_A 4 GMYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE-------IDALVINGDCTKIKTLEDAGIEDADMYIA 75 (140)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------CSSEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh-------cCcEEEEcCCCCHHHHHHcCcccCCEEEE
Confidence 468999986 9999999999999999999999876443322211 1356778999887766654 678999999
Q ss_pred ecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEec
Q 023515 88 TASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131 (281)
Q Consensus 88 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S 131 (281)
+... . +.|. .+.+.++.. +.+++|..+
T Consensus 76 ~~~~-------~-----~~~~----~~~~~~~~~-~~~~ii~~~ 102 (140)
T 1lss_A 76 VTGK-------E-----EVNL----MSSLLAKSY-GINKTIARI 102 (140)
T ss_dssp CCSC-------H-----HHHH----HHHHHHHHT-TCCCEEEEC
T ss_pred eeCC-------c-----hHHH----HHHHHHHHc-CCCEEEEEe
Confidence 8631 1 2232 445566665 556666543
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=98.78 E-value=5.4e-09 Score=91.22 Aligned_cols=81 Identities=11% Similarity=0.101 Sum_probs=64.3
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCC---CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcC--Cc
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRG---YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG--CD 83 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~d 83 (281)
|++|+|+|| |+||+++++.|+++| .+|++.+|+.++.+.+........ ..++..+.+|++|.+++++++++ +|
T Consensus 1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~-~~~~~~~~~D~~d~~~l~~~l~~~~~D 78 (405)
T 4ina_A 1 MAKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKG-YGEIDITTVDADSIEELVALINEVKPQ 78 (405)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTT-CCCCEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhc-CCceEEEEecCCCHHHHHHHHHhhCCC
Confidence 468999998 999999999999998 389999998776655444322111 13588899999999999999986 89
Q ss_pred EeEEeccc
Q 023515 84 GVCHTASP 91 (281)
Q Consensus 84 ~Vih~a~~ 91 (281)
+|||++++
T Consensus 79 vVin~ag~ 86 (405)
T 4ina_A 79 IVLNIALP 86 (405)
T ss_dssp EEEECSCG
T ss_pred EEEECCCc
Confidence 99999874
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.1e-08 Score=88.21 Aligned_cols=94 Identities=16% Similarity=0.137 Sum_probs=70.4
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 87 (281)
+.|||+|.|| |++|+.+++.|.+ .++|++.+|+..+.+.+. ..+..++.|+.|.+++.++++++|+||+
T Consensus 15 ~~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~---------~~~~~~~~d~~d~~~l~~~~~~~DvVi~ 83 (365)
T 3abi_A 15 RHMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENLEKVK---------EFATPLKVDASNFDKLVEVMKEFELVIG 83 (365)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHHHHHT---------TTSEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred CccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHh---------ccCCcEEEecCCHHHHHHHHhCCCEEEE
Confidence 3568999998 9999999999854 689999998765443322 2467788999999999999999999999
Q ss_pred ecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEec
Q 023515 88 TASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131 (281)
Q Consensus 88 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S 131 (281)
++++.. ...++++|.+. ++ ++|=+|
T Consensus 84 ~~p~~~-----------------~~~v~~~~~~~-g~-~yvD~s 108 (365)
T 3abi_A 84 ALPGFL-----------------GFKSIKAAIKS-KV-DMVDVS 108 (365)
T ss_dssp CCCGGG-----------------HHHHHHHHHHH-TC-EEEECC
T ss_pred ecCCcc-----------------cchHHHHHHhc-Cc-ceEeee
Confidence 875321 13567788876 43 555544
|
| >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=2.1e-08 Score=79.57 Aligned_cols=73 Identities=11% Similarity=0.071 Sum_probs=54.1
Q ss_pred ccCCCeEEEeCC----------------chHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCC
Q 023515 6 AAAGKVVCVTGA----------------SGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69 (281)
Q Consensus 6 ~~~~~~ilItGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 69 (281)
.+++|+|||||| ||.+|.++++.|+++|++|+++.+... ... ..++. ..|+
T Consensus 5 ~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~~-l~~----------~~g~~--~~dv 71 (226)
T 1u7z_A 5 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVS-LPT----------PPFVK--RVDV 71 (226)
T ss_dssp TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCC-CCC----------CTTEE--EEEC
T ss_pred CCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCcc-ccc----------CCCCe--EEcc
Confidence 367899999999 699999999999999999999987652 110 01232 3577
Q ss_pred CCcCcHHHH----hcCCcEeEEeccc
Q 023515 70 LEEGSFDSI----VDGCDGVCHTASP 91 (281)
Q Consensus 70 ~~~~~~~~~----~~~~d~Vih~a~~ 91 (281)
++.+++.+. +.++|++||+||.
T Consensus 72 ~~~~~~~~~v~~~~~~~Dili~~Aav 97 (226)
T 1u7z_A 72 MTALEMEAAVNASVQQQNIFIGCAAV 97 (226)
T ss_dssp CSHHHHHHHHHHHGGGCSEEEECCBC
T ss_pred CcHHHHHHHHHHhcCCCCEEEECCcc
Confidence 765544433 3479999999996
|
| >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=98.74 E-value=3.1e-08 Score=78.86 Aligned_cols=74 Identities=16% Similarity=0.182 Sum_probs=52.3
Q ss_pred CCCeEEEeCC----------------chHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCC
Q 023515 8 AGKVVCVTGA----------------SGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71 (281)
Q Consensus 8 ~~~~ilItGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 71 (281)
++|+|||||| ||.+|.++++.|+++|++|+++.|....... ...++..+ |+..
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~~~~---------~~~~~~~~--~v~s 70 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALKPE---------PHPNLSIR--EITN 70 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSCCCC---------CCTTEEEE--ECCS
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCcccccc---------CCCCeEEE--EHhH
Confidence 3899999999 9999999999999999999999997532110 01234433 4444
Q ss_pred cCcHH----HHhcCCcEeEEecccC
Q 023515 72 EGSFD----SIVDGCDGVCHTASPF 92 (281)
Q Consensus 72 ~~~~~----~~~~~~d~Vih~a~~~ 92 (281)
.+++. +.+.++|++||+||..
T Consensus 71 ~~em~~~v~~~~~~~Dili~aAAvs 95 (232)
T 2gk4_A 71 TKDLLIEMQERVQDYQVLIHSMAVS 95 (232)
T ss_dssp HHHHHHHHHHHGGGCSEEEECSBCC
T ss_pred HHHHHHHHHHhcCCCCEEEEcCccc
Confidence 33332 3344799999999963
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.3e-08 Score=89.99 Aligned_cols=77 Identities=16% Similarity=0.257 Sum_probs=62.1
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHC-CCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSR-GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
+++++|+|+|+ |++|+++++.|++. |++|++++|+.++...+... .++..+.+|+.|.+++.++++++|+|
T Consensus 21 l~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~-------~~~~~~~~D~~d~~~l~~~l~~~DvV 92 (467)
T 2axq_A 21 HMGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLANAQALAKP-------SGSKAISLDVTDDSALDKVLADNDVV 92 (467)
T ss_dssp --CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGG-------GTCEEEECCTTCHHHHHHHHHTSSEE
T ss_pred CCCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHh-------cCCcEEEEecCCHHHHHHHHcCCCEE
Confidence 46789999997 99999999999998 68999999986554443221 13667789999988888889999999
Q ss_pred EEeccc
Q 023515 86 CHTASP 91 (281)
Q Consensus 86 ih~a~~ 91 (281)
||+++.
T Consensus 93 In~tp~ 98 (467)
T 2axq_A 93 ISLIPY 98 (467)
T ss_dssp EECSCG
T ss_pred EECCch
Confidence 999875
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=2.6e-08 Score=84.22 Aligned_cols=118 Identities=18% Similarity=0.050 Sum_probs=77.9
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCC--E-----EEEEEcCCC--CcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHh
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGY--T-----VKASVRDPN--DPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV 79 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~--~-----V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 79 (281)
.+||+||||+|+||++++..|+..|. + ++++++.+. ..+-......... ..-. .++.......+.+
T Consensus 3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~-~~~~----~~~~~~~~~~~~~ 77 (333)
T 5mdh_A 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCA-LPLL----KDVIATDKEEIAF 77 (333)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTC-CTTE----EEEEEESCHHHHT
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhh-hccc----CCEEEcCCcHHHh
Confidence 35899999999999999999998763 4 888887542 1111111111100 0111 1232234567778
Q ss_pred cCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCcc-EEEEecc
Q 023515 80 DGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIK-RVVLTSS 132 (281)
Q Consensus 80 ~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~v~~SS 132 (281)
+++|+|||.||....... ...+.++.|+..++.+++.+.++.... +++.+|-
T Consensus 78 ~daDvVvitAg~prkpG~-tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsN 130 (333)
T 5mdh_A 78 KDLDVAILVGSMPRRDGM-ERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGN 130 (333)
T ss_dssp TTCSEEEECCSCCCCTTC-CTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred CCCCEEEEeCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 899999999986543333 334888999999999999999983323 5777665
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.64 E-value=6.1e-08 Score=72.79 Aligned_cols=75 Identities=17% Similarity=0.250 Sum_probs=59.0
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCC-CCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHH-hcCCcEeE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDP-NDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI-VDGCDGVC 86 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~Vi 86 (281)
.++|+|+|+ |.+|+.+++.|.+.|++|+++++++ +..+.+.... ..++.++.+|.++++.+.++ ++++|.||
T Consensus 3 ~~~vlI~G~-G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~-----~~~~~~i~gd~~~~~~l~~a~i~~ad~vi 76 (153)
T 1id1_A 3 KDHFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL-----GDNADVIPGDSNDSSVLKKAGIDRCRAIL 76 (153)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH-----CTTCEEEESCTTSHHHHHHHTTTTCSEEE
T ss_pred CCcEEEECC-CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhh-----cCCCeEEEcCCCCHHHHHHcChhhCCEEE
Confidence 568999995 9999999999999999999999974 2222222211 13578999999999888876 88999999
Q ss_pred Eec
Q 023515 87 HTA 89 (281)
Q Consensus 87 h~a 89 (281)
-+.
T Consensus 77 ~~~ 79 (153)
T 1id1_A 77 ALS 79 (153)
T ss_dssp ECS
T ss_pred Eec
Confidence 775
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=3.8e-07 Score=68.53 Aligned_cols=76 Identities=14% Similarity=0.126 Sum_probs=58.6
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHH-hcCCcEe
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI-VDGCDGV 85 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~V 85 (281)
..+++|+|+|+ |.+|..+++.|.+.|++|++++|++++.+.+.. ..++..+.+|..+.+.+.++ ++++|+|
T Consensus 17 ~~~~~v~IiG~-G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~-------~~g~~~~~~d~~~~~~l~~~~~~~ad~V 88 (155)
T 2g1u_A 17 QKSKYIVIFGC-GRLGSLIANLASSSGHSVVVVDKNEYAFHRLNS-------EFSGFTVVGDAAEFETLKECGMEKADMV 88 (155)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT-------TCCSEEEESCTTSHHHHHTTTGGGCSEE
T ss_pred cCCCcEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh-------cCCCcEEEecCCCHHHHHHcCcccCCEE
Confidence 45789999995 999999999999999999999998765443221 12456777898877666655 6789999
Q ss_pred EEecc
Q 023515 86 CHTAS 90 (281)
Q Consensus 86 ih~a~ 90 (281)
|.+.+
T Consensus 89 i~~~~ 93 (155)
T 2g1u_A 89 FAFTN 93 (155)
T ss_dssp EECSS
T ss_pred EEEeC
Confidence 98764
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.58 E-value=3.2e-08 Score=83.87 Aligned_cols=118 Identities=8% Similarity=0.019 Sum_probs=77.3
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCCcchhhh-hhhccCCCCcEEEEEcCCCCcCcHHHHhcCCc
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRH-LLALDGASERLQLFKANLLEEGSFDSIVDGCD 83 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d 83 (281)
|.++||.|+|++|++|+.++..|+..| .+|+++++..++.+.... +....... .++.-..+..++++++|
T Consensus 6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~-------~~i~~t~d~~~al~dAD 78 (343)
T 3fi9_A 6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEG-------LNLTFTSDIKEALTDAK 78 (343)
T ss_dssp SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTT-------CCCEEESCHHHHHTTEE
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCC-------CceEEcCCHHHHhCCCC
Confidence 457899999999999999999999998 589999986543322111 11111100 12222245677889999
Q ss_pred EeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccE-EEEecc
Q 023515 84 GVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKR-VVLTSS 132 (281)
Q Consensus 84 ~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~v~~SS 132 (281)
+||.+||........ ..+.++.|+...+.+.+.+.++..... ++.+|-
T Consensus 79 vVvitaG~p~kpG~~-R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsN 127 (343)
T 3fi9_A 79 YIVSSGGAPRKEGMT-REDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFN 127 (343)
T ss_dssp EEEECCC-------C-HHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred EEEEccCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecC
Confidence 999999864433322 337789999999999999998733332 555554
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=5.4e-07 Score=75.82 Aligned_cols=123 Identities=14% Similarity=0.107 Sum_probs=68.7
Q ss_pred CcchhccCCCeEEEeCCchHHHHHHHHHHHHCCC--EEEEEEcCCCCcchhhhhhhcc-CCCCcEEEEEcCCCCcCcHHH
Q 023515 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLALD-GASERLQLFKANLLEEGSFDS 77 (281)
Q Consensus 1 ~~~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~ 77 (281)
|.+.....++||.|+|+ |.+|..++..|+..|. +++++++++++.+-........ ....++....+| .+
T Consensus 1 ~~~~~~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~-------~~ 72 (326)
T 3vku_A 1 MASITDKDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAE-------YS 72 (326)
T ss_dssp ------CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECC-------GG
T ss_pred CcccccCCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECc-------HH
Confidence 44555667889999996 9999999999999885 8999998654433211111110 000123332222 34
Q ss_pred HhcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 78 IVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 78 ~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
.++++|+||.+||......+. ..+.++.|+.-.+.+.+.+.++.+...++.+|-
T Consensus 73 a~~~aDiVvi~ag~~~kpG~t-R~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtN 126 (326)
T 3vku_A 73 DAKDADLVVITAGAPQKPGET-RLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN 126 (326)
T ss_dssp GGTTCSEEEECCCCC-----------------CHHHHHHHHHTTTCCSEEEECSS
T ss_pred HhcCCCEEEECCCCCCCCCch-HHHHHHHHHHHHHHHHHHHHhcCCceEEEEccC
Confidence 577999999999864433222 337789999999999999998844445655553
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.43 E-value=2.7e-07 Score=68.11 Aligned_cols=72 Identities=14% Similarity=0.106 Sum_probs=58.6
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHH-hcCCcEeEE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI-VDGCDGVCH 87 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~Vih 87 (281)
.++|+|.|+ |.+|+.+++.|.+.|++|++++++++..+.+.. .++.++.+|.++++.+.++ ++++|+||-
T Consensus 7 ~~~viIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~--------~g~~~i~gd~~~~~~l~~a~i~~ad~vi~ 77 (140)
T 3fwz_A 7 CNHALLVGY-GRVGSLLGEKLLASDIPLVVIETSRTRVDELRE--------RGVRAVLGNAANEEIMQLAHLECAKWLIL 77 (140)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH--------TTCEEEESCTTSHHHHHHTTGGGCSEEEE
T ss_pred CCCEEEECc-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH--------cCCCEEECCCCCHHHHHhcCcccCCEEEE
Confidence 567999996 999999999999999999999998765444322 2578899999998877765 568999987
Q ss_pred ec
Q 023515 88 TA 89 (281)
Q Consensus 88 ~a 89 (281)
+.
T Consensus 78 ~~ 79 (140)
T 3fwz_A 78 TI 79 (140)
T ss_dssp CC
T ss_pred EC
Confidence 64
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.7e-07 Score=73.48 Aligned_cols=72 Identities=18% Similarity=0.150 Sum_probs=58.5
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHH-hcCCcEeEEe
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI-VDGCDGVCHT 88 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~Vih~ 88 (281)
|+|+|+|+ |.+|+++++.|.++|++|++++++++..+.+... .++.++.+|.++++.+.++ ++++|+||-+
T Consensus 1 M~iiIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~-------~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~ 72 (218)
T 3l4b_C 1 MKVIIIGG-ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKK-------LKATIIHGDGSHKEILRDAEVSKNDVVVIL 72 (218)
T ss_dssp CCEEEECC-HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH-------SSSEEEESCTTSHHHHHHHTCCTTCEEEEC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH-------cCCeEEEcCCCCHHHHHhcCcccCCEEEEe
Confidence 47999996 9999999999999999999999887654433221 2467899999998888876 6789999965
Q ss_pred c
Q 023515 89 A 89 (281)
Q Consensus 89 a 89 (281)
.
T Consensus 73 ~ 73 (218)
T 3l4b_C 73 T 73 (218)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.40 E-value=5.8e-07 Score=69.44 Aligned_cols=73 Identities=15% Similarity=0.125 Sum_probs=58.4
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHC-CCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHH--hcCCcE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSR-GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI--VDGCDG 84 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~--~~~~d~ 84 (281)
.+++|+|.| .|.+|..+++.|.+. |++|+++++++++...+.. .++..+.+|.++.+.+.++ ++++|+
T Consensus 38 ~~~~v~IiG-~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~--------~g~~~~~gd~~~~~~l~~~~~~~~ad~ 108 (183)
T 3c85_A 38 GHAQVLILG-MGRIGTGAYDELRARYGKISLGIEIREEAAQQHRS--------EGRNVISGDATDPDFWERILDTGHVKL 108 (183)
T ss_dssp TTCSEEEEC-CSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH--------TTCCEEECCTTCHHHHHTBCSCCCCCE
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH--------CCCCEEEcCCCCHHHHHhccCCCCCCE
Confidence 466899998 599999999999999 9999999998754433221 2466788999988777776 778999
Q ss_pred eEEec
Q 023515 85 VCHTA 89 (281)
Q Consensus 85 Vih~a 89 (281)
||.+.
T Consensus 109 vi~~~ 113 (183)
T 3c85_A 109 VLLAM 113 (183)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 99865
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=1.7e-06 Score=72.84 Aligned_cols=116 Identities=14% Similarity=0.100 Sum_probs=77.7
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCC--EEEEEEcCCCCcchhhhhhhc--cCCCCcEEEEEcCCCCcCcHHHHhcCCc
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLAL--DGASERLQLFKANLLEEGSFDSIVDGCD 83 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~~~d 83 (281)
.+++|.|+|+ |++|..++..|+..|. +|+++++++++.+........ .....++.....| .+.++++|
T Consensus 4 ~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~-------~~a~~~aD 75 (326)
T 3pqe_A 4 HVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGT-------YEDCKDAD 75 (326)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEEC-------GGGGTTCS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCc-------HHHhCCCC
Confidence 3678999996 9999999999999885 899999876543331111111 1111233332222 23577999
Q ss_pred EeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 84 GVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 84 ~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
+||.+||........ ..+.++.|+.....+.+.+.++.+...++.+|-
T Consensus 76 vVvi~ag~p~kpG~~-R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtN 123 (326)
T 3pqe_A 76 IVCICAGANQKPGET-RLELVEKNLKIFKGIVSEVMASGFDGIFLVATN 123 (326)
T ss_dssp EEEECCSCCCCTTCC-HHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred EEEEecccCCCCCcc-HHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCC
Confidence 999999865443332 337789999999999999998744445665554
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=4e-07 Score=71.28 Aligned_cols=98 Identities=16% Similarity=0.132 Sum_probs=64.3
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----CC
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-----GC 82 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-----~~ 82 (281)
.+++|+|+||+|.||..+++.+...|++|++++|++++.+.+..+ + .. . ..|..+.+..+.+.+ ++
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~----g--~~--~-~~d~~~~~~~~~~~~~~~~~~~ 108 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRL----G--VE--Y-VGDSRSVDFADEILELTDGYGV 108 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTT----C--CS--E-EEETTCSTHHHHHHHHTTTCCE
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----C--CC--E-EeeCCcHHHHHHHHHHhCCCCC
Confidence 478999999999999999999999999999999876443332211 1 11 1 236666543333322 58
Q ss_pred cEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccce
Q 023515 83 DGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMA 134 (281)
Q Consensus 83 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~ 134 (281)
|+||++++. . .....++.+++. .++|.+++..
T Consensus 109 D~vi~~~g~----------~-------~~~~~~~~l~~~---G~~v~~g~~~ 140 (198)
T 1pqw_A 109 DVVLNSLAG----------E-------AIQRGVQILAPG---GRFIELGKKD 140 (198)
T ss_dssp EEEEECCCT----------H-------HHHHHHHTEEEE---EEEEECSCGG
T ss_pred eEEEECCch----------H-------HHHHHHHHhccC---CEEEEEcCCC
Confidence 999999862 1 123344444443 5899888753
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=2.4e-06 Score=72.35 Aligned_cols=115 Identities=19% Similarity=0.135 Sum_probs=75.4
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhh-hh-hcc--CCCCcEEEEEcCCCCcCcHHHHhcCC
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRH-LL-ALD--GASERLQLFKANLLEEGSFDSIVDGC 82 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~-~~-~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~ 82 (281)
+.+||.|+|| |.+|..++..|+..|+ +|++++++++..+.... +. ... ....++.+ ..+++++++++
T Consensus 8 ~~~kI~VIGa-G~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~-------t~d~~ea~~~a 79 (331)
T 1pzg_A 8 RRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA-------EYSYEAALTGA 79 (331)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE-------ECSHHHHHTTC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEE-------eCCHHHHhCCC
Confidence 3578999998 9999999999999998 99999998754443111 11 000 00112221 24466678899
Q ss_pred cEeEEecccCCCCCCC----ccchhhhhHHHHHHHHHHHhhhCCCccEEEEe
Q 023515 83 DGVCHTASPFYHDAKD----PQVELLDPAVKGTLNVLNSCAKFPSIKRVVLT 130 (281)
Q Consensus 83 d~Vih~a~~~~~~~~~----~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~ 130 (281)
|+||-.++........ ........|+.-.+.+.+.+.+..+...+|.+
T Consensus 80 DiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~ 131 (331)
T 1pzg_A 80 DCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVV 131 (331)
T ss_dssp SEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred CEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEE
Confidence 9999999764433220 12366778888999999999887333344443
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=9.5e-06 Score=67.87 Aligned_cols=116 Identities=18% Similarity=0.128 Sum_probs=76.5
Q ss_pred CeEEEeCCchHHHHHHHHHHHHC-C--CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSR-G--YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~-g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
|||.|+||+|.+|..++..|..+ + .+++++++.+ +..-............+++.+.+ ....+.++++|+||
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl~~~~~~~~v~~~~~-----~~~~~~~~~aDivi 74 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSG-----EDATPALEGADVVL 74 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHHHTSCSSEEEEEECS-----SCCHHHHTTCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHhhCCCCCceEEEecC-----CCcHHHhCCCCEEE
Confidence 47999999999999999999875 5 5899999876 32211111111110111221111 12356778999999
Q ss_pred EecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
-.||........ ..+.++.|+.-.+.+.+.+.++.+...++.+|-
T Consensus 75 i~ag~~rkpG~~-R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtN 119 (312)
T 3hhp_A 75 ISAGVARKPGMD-RSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119 (312)
T ss_dssp ECCSCSCCTTCC-HHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred EeCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 999875543333 348889999999999999998744445666654
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=2e-06 Score=72.43 Aligned_cols=116 Identities=19% Similarity=0.169 Sum_probs=76.5
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhhhhc----cCCCCcEEEEEcCCCCcCcHHHHhcC
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLAL----DGASERLQLFKANLLEEGSFDSIVDG 81 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~~~D~~~~~~~~~~~~~ 81 (281)
|+++||.|+|+ |.+|..++..|+..|+ +|+++++++++.+........ .....++.. .. +. +++++
T Consensus 5 m~~~kI~viGa-G~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~-t~------d~-~a~~~ 75 (324)
T 3gvi_A 5 MARNKIALIGS-GMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTG-AN------DY-AAIEG 75 (324)
T ss_dssp -CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE-ES------SG-GGGTT
T ss_pred CcCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEE-eC------CH-HHHCC
Confidence 45789999998 9999999999999998 999999987654321111110 000112221 11 22 56789
Q ss_pred CcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 82 CDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 82 ~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
+|+||..||........ ..+.+..|+.-...+.+.+.++.....++.+|-
T Consensus 76 aDiVIiaag~p~k~G~~-R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtN 125 (324)
T 3gvi_A 76 ADVVIVTAGVPRKPGMS-RDDLLGINLKVMEQVGAGIKKYAPEAFVICITN 125 (324)
T ss_dssp CSEEEECCSCCCC------CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CCEEEEccCcCCCCCCC-HHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCC
Confidence 99999999865433322 237788899999999999998744345666654
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=1.2e-05 Score=67.38 Aligned_cols=113 Identities=15% Similarity=0.160 Sum_probs=71.1
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhhhhc----cCCCCcEEEEEcCCCCcCcHHHHhcCCc
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLAL----DGASERLQLFKANLLEEGSFDSIVDGCD 83 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~~~D~~~~~~~~~~~~~~d 83 (281)
++||.|+|| |.+|..++..|+..|+ +|+++++++++.+........ .....+++. ..+. +.++++|
T Consensus 2 ~~kI~VIGa-G~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~-------t~d~-~a~~~aD 72 (309)
T 1ur5_A 2 RKKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTG-------TNNY-ADTANSD 72 (309)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEE-------ESCG-GGGTTCS
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEE-------CCCH-HHHCCCC
Confidence 468999998 9999999999999996 888888876544321111110 000112221 1223 4578999
Q ss_pred EeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 84 GVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 84 ~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
+||.+++........ ..+....|+.....+.+.+.+. ....+|.+.|
T Consensus 73 ~Vi~a~g~p~~~g~~-r~dl~~~n~~i~~~i~~~i~~~-~p~a~vi~~t 119 (309)
T 1ur5_A 73 VIVVTSGAPRKPGMS-REDLIKVNADITRACISQAAPL-SPNAVIIMVN 119 (309)
T ss_dssp EEEECCCC---------CHHHHHHHHHHHHHHHHHGGG-CTTCEEEECC
T ss_pred EEEEcCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEcC
Confidence 999999864433222 2266788999999999999987 3444544444
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=98.19 E-value=6.5e-06 Score=69.02 Aligned_cols=116 Identities=18% Similarity=0.094 Sum_probs=77.3
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCC--CCcchhhhhhhc----cCCCCcEEEEEcCCCCcCcHHHHh
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDP--NDPKKTRHLLAL----DGASERLQLFKANLLEEGSFDSIV 79 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~--~~~~~~~~~~~~----~~~~~~~~~~~~D~~~~~~~~~~~ 79 (281)
|++++|.|+|+ |.+|..++..|+..|+ +|+++++++ ............ .....++.. . .+ .+.+
T Consensus 6 ~~~~kv~ViGa-G~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~--t--~d----~~a~ 76 (315)
T 3tl2_A 6 IKRKKVSVIGA-GFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIG--T--SD----YADT 76 (315)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEE--E--SC----GGGG
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEE--c--CC----HHHh
Confidence 45789999996 9999999999999998 999999973 222211111100 000112221 0 11 2457
Q ss_pred cCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 80 DGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 80 ~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
+++|+||-+||........ ..+.++.|+...+.+.+.+.++.+...++.+|.
T Consensus 77 ~~aDvVIiaag~p~kpg~~-R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsN 128 (315)
T 3tl2_A 77 ADSDVVVITAGIARKPGMS-RDDLVATNSKIMKSITRDIAKHSPNAIIVVLTN 128 (315)
T ss_dssp TTCSEEEECCSCCCCTTCC-HHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CCCCEEEEeCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence 7999999999875544333 347889999999999999998744445666664
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=2.5e-06 Score=71.39 Aligned_cols=80 Identities=13% Similarity=0.088 Sum_probs=56.9
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCC---CCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCC
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDP---NDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGC 82 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~---~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 82 (281)
+++++++|+|+ |++|++++..|.+.|. +|++++|+. ++.+.+........ .......++.+.+++.+.++++
T Consensus 152 l~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~---~~~~~~~~~~~~~~l~~~l~~a 227 (315)
T 3tnl_A 152 IIGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKT---DCKAQLFDIEDHEQLRKEIAES 227 (315)
T ss_dssp CTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHS---SCEEEEEETTCHHHHHHHHHTC
T ss_pred ccCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhc---CCceEEeccchHHHHHhhhcCC
Confidence 46899999997 8999999999999997 899999984 33333322221111 1233344565656677778899
Q ss_pred cEeEEecc
Q 023515 83 DGVCHTAS 90 (281)
Q Consensus 83 d~Vih~a~ 90 (281)
|+|||+..
T Consensus 228 DiIINaTp 235 (315)
T 3tnl_A 228 VIFTNATG 235 (315)
T ss_dssp SEEEECSS
T ss_pred CEEEECcc
Confidence 99999864
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=98.17 E-value=3.6e-06 Score=70.81 Aligned_cols=116 Identities=19% Similarity=0.093 Sum_probs=77.8
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhhhhcc----CCCCcEEEEEcCCCCcCcHHHHhcC
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALD----GASERLQLFKANLLEEGSFDSIVDG 81 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~~D~~~~~~~~~~~~~ 81 (281)
|+++||.|+|+ |.+|..++..|+..|. +|+++++++++.+......... ....++.. .. + .+++++
T Consensus 3 m~~~kI~iiGa-G~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~-t~---d----~~a~~~ 73 (321)
T 3p7m_A 3 MARKKITLVGA-GNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRG-TN---D----YKDLEN 73 (321)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEE-ES---C----GGGGTT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEE-cC---C----HHHHCC
Confidence 34679999995 9999999999999887 9999999876543221111110 00112221 11 2 246789
Q ss_pred CcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 82 CDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 82 ~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
+|+||..|+....... ...+.+..|+.....+.+.+.++.+...++.+|-
T Consensus 74 aDvVIi~ag~p~k~G~-~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN 123 (321)
T 3p7m_A 74 SDVVIVTAGVPRKPGM-SRDDLLGINIKVMQTVGEGIKHNCPNAFVICITN 123 (321)
T ss_dssp CSEEEECCSCCCCTTC-CHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CCEEEEcCCcCCCCCC-CHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 9999999986544333 2337788899999999999998743345666643
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=7.4e-06 Score=69.11 Aligned_cols=123 Identities=14% Similarity=0.103 Sum_probs=76.0
Q ss_pred CcchhccCCCeEEEeCCchHHHHHHHHHHHHCCC--EEEEEEcCCCCcchhhhhhhc-cCCCCcEEEEEcCCCCcCcHHH
Q 023515 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLAL-DGASERLQLFKANLLEEGSFDS 77 (281)
Q Consensus 1 ~~~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~D~~~~~~~~~ 77 (281)
|.|.+..+++||.|+|| |.+|..++..|+..+. +++++++++++.+........ .....++.+.. | + .+
T Consensus 1 ~~~~~~~~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~-~--~----~~ 72 (326)
T 2zqz_A 1 MASITDKDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYS-A--E----YS 72 (326)
T ss_dssp -----CCCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE-C--C----GG
T ss_pred CCccccCCCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEE-C--C----HH
Confidence 45566666789999998 9999999999988774 899999865433221111111 00012233322 1 1 34
Q ss_pred HhcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 78 IVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 78 ~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
+++++|+||..++........ ....+..|+.....+.+.+.++.....+|.+|-
T Consensus 73 a~~~aDvVii~ag~~~k~g~~-R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 126 (326)
T 2zqz_A 73 DAKDADLVVITAGAPQKPGET-RLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN 126 (326)
T ss_dssp GGGGCSEEEECCCCC-----C-HHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred HhCCCCEEEEcCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 578999999999864433222 236778899999999999988744456666543
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=1.2e-05 Score=66.74 Aligned_cols=113 Identities=11% Similarity=0.016 Sum_probs=76.6
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCC--EEEEEEcCCCCcch----hhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCc
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKK----TRHLLALDGASERLQLFKANLLEEGSFDSIVDGCD 83 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~----~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d 83 (281)
|||.|+|+ |.+|.+++..|+..|+ +|+++++++++.+. +.+.........++.. . .+ .++++++|
T Consensus 1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~--t-----~d-~~a~~~aD 71 (294)
T 1oju_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG--G-----AD-YSLLKGSE 71 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEE--E-----SC-GGGGTTCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEE--e-----CC-HHHhCCCC
Confidence 47999999 9999999999999887 99999998755431 1111110111112221 1 12 45678999
Q ss_pred EeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 84 GVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 84 ~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
+||..|+........ ..+.++.|+.-.+.+.+.+.++.+...++.+|-
T Consensus 72 iVViaag~~~kpG~~-R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsN 119 (294)
T 1oju_A 72 IIVVTAGLARKPGMT-RLDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (294)
T ss_dssp EEEECCCCCCCSSCC-HHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred EEEECCCCCCCCCCc-HHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence 999999865443332 337788999999999999999844455666654
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=8.8e-07 Score=70.06 Aligned_cols=73 Identities=15% Similarity=0.141 Sum_probs=51.2
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEec
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a 89 (281)
|+|+|+||+|++|+++++.|++.|++|++++|++++.+.+.+..... +. ..|+. ..++.++++++|+||++.
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~-----~~--~~~~~-~~~~~~~~~~~D~Vi~~~ 72 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRI-----AG--DASIT-GMKNEDAAEACDIAVLTI 72 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHH-----HS--SCCEE-EEEHHHHHHHCSEEEECS
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccc-----cc--cCCCC-hhhHHHHHhcCCEEEEeC
Confidence 47999999999999999999999999999999865444332211100 00 02232 245667788899999986
Q ss_pred c
Q 023515 90 S 90 (281)
Q Consensus 90 ~ 90 (281)
.
T Consensus 73 ~ 73 (212)
T 1jay_A 73 P 73 (212)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.15 E-value=4e-06 Score=71.49 Aligned_cols=74 Identities=23% Similarity=0.279 Sum_probs=54.6
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----CC
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-----GC 82 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-----~~ 82 (281)
.+++|||+||+|.||..+++.+...|.+|++++|++++.+.+..+ +.. ...|.++.+++.+.++ ++
T Consensus 169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~--------g~~-~~~d~~~~~~~~~~~~~~~~~~~ 239 (347)
T 2hcy_A 169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSI--------GGE-VFIDFTKEKDIVGAVLKATDGGA 239 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHT--------TCC-EEEETTTCSCHHHHHHHHHTSCE
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHc--------CCc-eEEecCccHhHHHHHHHHhCCCC
Confidence 478999999999999999999999999999999987654433221 111 1237765555555443 68
Q ss_pred cEeEEecc
Q 023515 83 DGVCHTAS 90 (281)
Q Consensus 83 d~Vih~a~ 90 (281)
|+||++++
T Consensus 240 D~vi~~~g 247 (347)
T 2hcy_A 240 HGVINVSV 247 (347)
T ss_dssp EEEEECSS
T ss_pred CEEEECCC
Confidence 99999986
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=2e-05 Score=66.30 Aligned_cols=113 Identities=15% Similarity=0.122 Sum_probs=71.0
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCC--EEEEEEcCCCCcchhhhhhhcc-CCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLALD-GASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
++||.|+|+ |++|..++..|+..|. +|+++++++++.+......... ....++.+. . .+ .++++++|+|
T Consensus 7 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~-~--~~----~~a~~~aDvV 78 (318)
T 1y6j_A 7 RSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLY-A--GD----YSDVKDCDVI 78 (318)
T ss_dssp CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC-----C----GGGGTTCSEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEE-E--CC----HHHhCCCCEE
Confidence 568999998 9999999999999986 9999999876544322211111 011223222 1 12 3457899999
Q ss_pred EEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEe
Q 023515 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLT 130 (281)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~ 130 (281)
|.+++........ ..+....|+.....+.+.+.++.+...+|.+
T Consensus 79 ii~~g~p~k~g~~-r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~ 122 (318)
T 1y6j_A 79 VVTAGANRKPGET-RLDLAKKNVMIAKEVTQNIMKYYNHGVILVV 122 (318)
T ss_dssp EECCCC------C-HHHHHHHHHHHHHHHHHHHHHHCCSCEEEEC
T ss_pred EEcCCCCCCCCcC-HHHHHHhhHHHHHHHHHHHHHhCCCcEEEEe
Confidence 9999864432222 2367788999999999999987333445554
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=1.6e-05 Score=66.89 Aligned_cols=116 Identities=14% Similarity=0.073 Sum_probs=75.0
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCCcchhhh-hh-hccCCCCcEEEEEcCCCCcCcHHHHhcCC
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRH-LL-ALDGASERLQLFKANLLEEGSFDSIVDGC 82 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~-~~-~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 82 (281)
|+++||.|+|+ |.+|..++..|+.+| .+|.++++++++.+.... +. .......++.+.. | + .++++++
T Consensus 4 m~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~-~--~----~~a~~~a 75 (317)
T 3d0o_A 4 FKGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA-G--E----YSDCHDA 75 (317)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE-C--C----GGGGTTC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe-C--C----HHHhCCC
Confidence 34679999998 999999999999888 589999887533322111 11 0111011233222 1 1 4457899
Q ss_pred cEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEec
Q 023515 83 DGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131 (281)
Q Consensus 83 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S 131 (281)
|+||..++........ ....+..|+.-...+.+.+.++.....++.+|
T Consensus 76 DvVvi~ag~~~~~g~~-r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t 123 (317)
T 3d0o_A 76 DLVVICAGAAQKPGET-RLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT 123 (317)
T ss_dssp SEEEECCCCCCCTTCC-HHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred CEEEECCCCCCCCCCc-HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 9999999865433222 23677889999999999999884444555543
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.8e-06 Score=74.25 Aligned_cols=76 Identities=17% Similarity=0.151 Sum_probs=58.3
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+.+++|+|+|+ |.||+.+++.|...|++|++++|++++.+.+.... + .. +..|..+.+++.++++++|+||
T Consensus 164 l~~~~V~ViGa-G~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~---g--~~---~~~~~~~~~~l~~~~~~~DvVi 234 (369)
T 2eez_A 164 VAPASVVILGG-GTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVF---G--GR---VITLTATEANIKKSVQHADLLI 234 (369)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT---T--TS---EEEEECCHHHHHHHHHHCSEEE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhc---C--ce---EEEecCCHHHHHHHHhCCCEEE
Confidence 56789999999 99999999999999999999999865443322211 1 12 3456667777888888999999
Q ss_pred Eeccc
Q 023515 87 HTASP 91 (281)
Q Consensus 87 h~a~~ 91 (281)
++++.
T Consensus 235 ~~~g~ 239 (369)
T 2eez_A 235 GAVLV 239 (369)
T ss_dssp ECCC-
T ss_pred ECCCC
Confidence 99874
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=3.1e-06 Score=71.76 Aligned_cols=74 Identities=18% Similarity=0.233 Sum_probs=53.5
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----CC
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-----GC 82 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-----~~ 82 (281)
.+++|+||||+|.||..+++.+...|++|++++|++++.+.+..+ + .. ...|.++.+++.+.++ ++
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~----g--~~---~~~d~~~~~~~~~~~~~~~~~~~ 215 (333)
T 1v3u_A 145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI----G--FD---AAFNYKTVNSLEEALKKASPDGY 215 (333)
T ss_dssp SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----T--CS---EEEETTSCSCHHHHHHHHCTTCE
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhc----C--Cc---EEEecCCHHHHHHHHHHHhCCCC
Confidence 478999999999999999999999999999999876544333221 1 11 2247766444444432 58
Q ss_pred cEeEEecc
Q 023515 83 DGVCHTAS 90 (281)
Q Consensus 83 d~Vih~a~ 90 (281)
|+||+++|
T Consensus 216 d~vi~~~g 223 (333)
T 1v3u_A 216 DCYFDNVG 223 (333)
T ss_dssp EEEEESSC
T ss_pred eEEEECCC
Confidence 99999987
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=5.7e-05 Score=63.56 Aligned_cols=115 Identities=15% Similarity=0.100 Sum_probs=73.7
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhhhhc----cCCCCcEEEEEcCCCCcCcHHHHhcCCc
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLAL----DGASERLQLFKANLLEEGSFDSIVDGCD 83 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~~~D~~~~~~~~~~~~~~d 83 (281)
++||.|+|| |.+|..++..|+..|+ +|+++++++++.+........ .....+++. ..++ ++++++|
T Consensus 4 ~~kI~VIGa-G~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~-------t~d~-~al~~aD 74 (322)
T 1t2d_A 4 KAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSG-------SNTY-DDLAGAD 74 (322)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEE-------ECCG-GGGTTCS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEE-------CCCH-HHhCCCC
Confidence 578999998 9999999999999997 888888886544322111111 010112221 1234 5678999
Q ss_pred EeEEecccCCCCCCC----ccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 84 GVCHTASPFYHDAKD----PQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 84 ~Vih~a~~~~~~~~~----~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
+||.+++.+...... ...+....|+.-.+.+.+.+.+..+...+|.+|-
T Consensus 75 ~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 127 (322)
T 1t2d_A 75 VVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTN 127 (322)
T ss_dssp EEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred EEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 999999754332221 0236677788888888888888743334555543
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=98.05 E-value=6.3e-05 Score=63.52 Aligned_cols=115 Identities=20% Similarity=0.145 Sum_probs=73.5
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhhhh--c--cCCCCcEEEEEcCCCCcCcHHHHhcCC
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLA--L--DGASERLQLFKANLLEEGSFDSIVDGC 82 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~--~--~~~~~~~~~~~~D~~~~~~~~~~~~~~ 82 (281)
++++|.|+|| |.+|..++..|+..|+ +|++.+++++..+....... . .....+++. ..++ ++++++
T Consensus 13 ~~~kI~ViGa-G~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~-------t~d~-~al~~a 83 (328)
T 2hjr_A 13 MRKKISIIGA-GQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFG-------ENNY-EYLQNS 83 (328)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEE-------ESCG-GGGTTC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEE-------CCCH-HHHCCC
Confidence 3468999998 9999999999999998 99999998765443111110 0 000112322 1224 467899
Q ss_pred cEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 83 DGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 83 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
|+||-+++.+....... .+....|+.-...+.+.+.+..+...++.+|-
T Consensus 84 D~VI~avg~p~k~g~tr-~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tN 132 (328)
T 2hjr_A 84 DVVIITAGVPRKPNMTR-SDLLTVNAKIVGSVAENVGKYCPNAFVICITN 132 (328)
T ss_dssp SEEEECCSCCCCTTCCS-GGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CEEEEcCCCCCCCCCch-hhHHhhhHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 99999987543222211 25667788888888888887633334454443
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=98.03 E-value=3.5e-05 Score=64.90 Aligned_cols=118 Identities=11% Similarity=0.106 Sum_probs=78.4
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCC--EEEEEEcCCCCcchhhhhhhcc-CCCCcEEEEEcCCCCcCcHHHHhcCCc
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLALD-GASERLQLFKANLLEEGSFDSIVDGCD 83 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~d 83 (281)
..+++|.|+|+ |.+|..++..|+.+|. +|++++++.++.+......... ........+.. .| .+ .++++|
T Consensus 17 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~--~d---~~-~~~~aD 89 (331)
T 4aj2_A 17 VPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSS--KD---YS-VTANSK 89 (331)
T ss_dssp CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEEC--SS---GG-GGTTEE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEc--CC---HH-HhCCCC
Confidence 34689999997 9999999999999985 8999998754333321111110 00011112211 12 23 478999
Q ss_pred EeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 84 GVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 84 ~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
+||.+||......+. ..+.++.|+.-.+.+.+.+.++.+...++.+|-
T Consensus 90 iVvi~aG~~~kpG~t-R~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtN 137 (331)
T 4aj2_A 90 LVIITAGARQQEGES-RLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSN 137 (331)
T ss_dssp EEEECCSCCCCTTCC-GGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred EEEEccCCCCCCCcc-HHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 999999875543333 348899999999999999998744446666664
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=98.01 E-value=2.5e-06 Score=68.59 Aligned_cols=70 Identities=11% Similarity=0.067 Sum_probs=56.6
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHH-hcCCcEeEE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI-VDGCDGVCH 87 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~Vih 87 (281)
.++|+|.|+ |.+|+.+++.|.+.|+ |++++++++....+. .++.++.+|.++++.+.++ ++++|.||.
T Consensus 9 ~~~viI~G~-G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~---------~~~~~i~gd~~~~~~l~~a~i~~ad~vi~ 77 (234)
T 2aef_A 9 SRHVVICGW-SESTLECLRELRGSEV-FVLAEDENVRKKVLR---------SGANFVHGDPTRVSDLEKANVRGARAVIV 77 (234)
T ss_dssp -CEEEEESC-CHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH---------TTCEEEESCTTCHHHHHHTTCTTCSEEEE
T ss_pred CCEEEEECC-ChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh---------cCCeEEEcCCCCHHHHHhcCcchhcEEEE
Confidence 568999997 9999999999999999 999988765433221 2478899999999888876 789999997
Q ss_pred ec
Q 023515 88 TA 89 (281)
Q Consensus 88 ~a 89 (281)
+.
T Consensus 78 ~~ 79 (234)
T 2aef_A 78 DL 79 (234)
T ss_dssp CC
T ss_pred cC
Confidence 64
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.01 E-value=2.8e-05 Score=65.38 Aligned_cols=115 Identities=12% Similarity=0.078 Sum_probs=72.3
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCC--EEEEEEcCCCCcchhhhhhhc-cCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLAL-DGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
.+||.|+|| |.+|..++..|+..+. +++++++++++.+........ .....++++.. | + .++++++|+|
T Consensus 5 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~-~--~----~~a~~~aDvV 76 (318)
T 1ez4_A 5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS-G--E----YSDCKDADLV 76 (318)
T ss_dssp BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE-C--C----GGGGTTCSEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEE-C--C----HHHhCCCCEE
Confidence 478999998 9999999999998874 899999865443321111111 00112233322 1 1 4457899999
Q ss_pred EEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
|..++........ ..+.+..|+.....+.+.+.++.....++.+|-
T Consensus 77 ii~ag~~~~~g~~-R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 122 (318)
T 1ez4_A 77 VITAGAPQKPGES-RLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN 122 (318)
T ss_dssp EECCCC-----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred EECCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 9999864433222 236778899999999999998844455666543
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.01 E-value=5.2e-05 Score=64.19 Aligned_cols=174 Identities=14% Similarity=0.084 Sum_probs=98.5
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCC-------EEEEEEcCCCCc--chhhhhhhccCCCCcEEEEEcCCCCcCcHHH
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-------TVKASVRDPNDP--KKTRHLLALDGASERLQLFKANLLEEGSFDS 77 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 77 (281)
|+.-||.|+||+|.||..++-.|..... ++.+++..+... +-.....+.-..........+ .+..+
T Consensus 22 ~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~-----~~~~~ 96 (345)
T 4h7p_A 22 MSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVT-----ADPRV 96 (345)
T ss_dssp CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEE-----SCHHH
T ss_pred CCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEc-----CChHH
Confidence 4456899999999999999998887542 688888754211 111111111111111222221 23467
Q ss_pred HhcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCcc-EEEEeccceeeecCCCCCCCCeeeec-C-CC
Q 023515 78 IVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIK-RVVLTSSMAAVLNTGKPRTPDVVVDE-T-WF 154 (281)
Q Consensus 78 ~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~v~~SS~~~~~~~~~~~~~~~~~~e-~-~~ 154 (281)
+++++|+||-.||......... .++++.|..-.+.+.+.+.++.... .++.+|-..-.. ....-+ . ..
T Consensus 97 a~~~advVvi~aG~prkpGmtR-~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~~--------~~i~~~~~~g~ 167 (345)
T 4h7p_A 97 AFDGVAIAIMCGAFPRKAGMER-KDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTN--------ALILLKSAQGK 167 (345)
T ss_dssp HTTTCSEEEECCCCCCCTTCCH-HHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHH--------HHHHHHHTTTC
T ss_pred HhCCCCEEEECCCCCCCCCCCH-HHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcchH--------HHHHHHHccCC
Confidence 7899999999999766544433 4889999999999999998752223 445555321000 000000 0 00
Q ss_pred CChhhhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCC
Q 023515 155 SDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGP 200 (281)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~ 200 (281)
+.+ ...-+.+..-.-++-..++++.|+....+.-..|+|.
T Consensus 168 ~~~------r~i~~~t~LDs~R~~~~la~~~~v~~~~V~~~~V~G~ 207 (345)
T 4h7p_A 168 LNP------RHVTAMTRLDHNRALSLLARKAGVPVSQVRNVIIWGN 207 (345)
T ss_dssp SCG------GGEEECCHHHHHHHHHHHHHHHTSCGGGEECCEEEBC
T ss_pred CCc------ceeeeccchhHHHHHHHHHHHHCcChhheecceeecC
Confidence 111 1224555555566666666767776555554445553
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=3.6e-05 Score=64.69 Aligned_cols=116 Identities=14% Similarity=0.131 Sum_probs=73.6
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCCcchhhh-hhh-ccCCCCcEEEEEcCCCCcCcHHHHhcCC
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRH-LLA-LDGASERLQLFKANLLEEGSFDSIVDGC 82 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~-~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 82 (281)
.+++||.|+|+ |.+|..++..|+..| .+|++++++++..+.... +.. ......++.+.. | + .+.++++
T Consensus 4 ~~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~-~--~----~~al~~a 75 (316)
T 1ldn_A 4 NGGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH-G--D----YDDCRDA 75 (316)
T ss_dssp TTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE-C--C----GGGTTTC
T ss_pred CCCCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEc-C--c----HHHhCCC
Confidence 34679999998 999999999998877 489999997643322111 111 111111233321 1 1 3457899
Q ss_pred cEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEec
Q 023515 83 DGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131 (281)
Q Consensus 83 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S 131 (281)
|+||-+++......... .+.+..|..-...+.+.+.++.+...++.+|
T Consensus 76 DvViia~~~~~~~g~~r-~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~t 123 (316)
T 1ldn_A 76 DLVVICAGANQKPGETR-LDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123 (316)
T ss_dssp SEEEECCSCCCCTTTCS-GGGHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred CEEEEcCCCCCCCCCCH-HHHHHcChHHHHHHHHHHHHHCCCCEEEEeC
Confidence 99999998644333222 3667889998899999888873333444443
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=98.00 E-value=6.2e-06 Score=67.82 Aligned_cols=74 Identities=19% Similarity=0.234 Sum_probs=51.6
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+++++++|+|+ |.+|++++..|++.|.+|++++|+.++.+.+.+..... ..+. ..|+ +++.+ .++|+||
T Consensus 117 l~~k~vlViGa-Gg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~---~~~~--~~~~---~~~~~--~~~DivV 185 (271)
T 1nyt_A 117 RPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHT---GSIQ--ALSM---DELEG--HEFDLII 185 (271)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGG---SSEE--ECCS---GGGTT--CCCSEEE
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhcc---CCee--EecH---HHhcc--CCCCEEE
Confidence 46889999998 78999999999999999999999876555443332111 1121 1232 22322 5899999
Q ss_pred Eeccc
Q 023515 87 HTASP 91 (281)
Q Consensus 87 h~a~~ 91 (281)
++++.
T Consensus 186 n~t~~ 190 (271)
T 1nyt_A 186 NATSS 190 (271)
T ss_dssp ECCSC
T ss_pred ECCCC
Confidence 99975
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=98.00 E-value=3.6e-05 Score=64.40 Aligned_cols=115 Identities=11% Similarity=0.005 Sum_probs=73.6
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCC--EEEEEEcCCCCcchhhhhhhc--cCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLAL--DGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
|||.|+|+ |.+|..++..|+..|. +|+++++++++.+........ .....+....-. .+ .+.++++|+|
T Consensus 1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~--~~----~~a~~~aDvV 73 (314)
T 3nep_X 1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGT--ND----YGPTEDSDVC 73 (314)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEE--SS----SGGGTTCSEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEEC--CC----HHHhCCCCEE
Confidence 57999996 9999999999999885 899999988654322111110 000011222111 11 3467789999
Q ss_pred EEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
|.+||........ ..+.++.|+.-.+.+.+.+.++.+...++.+|-
T Consensus 74 ii~ag~~~kpG~~-R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN 119 (314)
T 3nep_X 74 IITAGLPRSPGMS-RDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVAN 119 (314)
T ss_dssp EECCCC--------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCS
T ss_pred EECCCCCCCCCCC-HHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCC
Confidence 9999875443332 338889999999999999999844445665554
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.97 E-value=5.2e-06 Score=70.16 Aligned_cols=74 Identities=12% Similarity=0.113 Sum_probs=52.8
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----CC
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-----GC 82 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-----~~ 82 (281)
.+++|+|+||+|.||..+++.+...|++|++++|++++.+.+.++ + ... ..|.++.+..+.+.+ ++
T Consensus 140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~----g--~~~---~~~~~~~~~~~~~~~~~~~~~~ 210 (327)
T 1qor_A 140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKA----G--AWQ---VINYREEDLVERLKEITGGKKV 210 (327)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH----T--CSE---EEETTTSCHHHHHHHHTTTCCE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----C--CCE---EEECCCccHHHHHHHHhCCCCc
Confidence 478999999999999999999999999999999876544433322 1 111 236655444333332 58
Q ss_pred cEeEEecc
Q 023515 83 DGVCHTAS 90 (281)
Q Consensus 83 d~Vih~a~ 90 (281)
|+||+++|
T Consensus 211 D~vi~~~g 218 (327)
T 1qor_A 211 RVVYDSVG 218 (327)
T ss_dssp EEEEECSC
T ss_pred eEEEECCc
Confidence 99999987
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=97.95 E-value=5.8e-06 Score=70.10 Aligned_cols=74 Identities=22% Similarity=0.268 Sum_probs=52.7
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHh-----cCC
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV-----DGC 82 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-----~~~ 82 (281)
.+++|+|+||+|.||..+++.+...|++|++++|++++.+.+.++ + ... ..|.++.+..+.+. +++
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~----g--~~~---~~d~~~~~~~~~i~~~~~~~~~ 215 (333)
T 1wly_A 145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKL----G--CHH---TINYSTQDFAEVVREITGGKGV 215 (333)
T ss_dssp TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----T--CSE---EEETTTSCHHHHHHHHHTTCCE
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----C--CCE---EEECCCHHHHHHHHHHhCCCCC
Confidence 478999999999999999999999999999999986544433322 1 111 23665544333332 268
Q ss_pred cEeEEecc
Q 023515 83 DGVCHTAS 90 (281)
Q Consensus 83 d~Vih~a~ 90 (281)
|+||+++|
T Consensus 216 d~vi~~~g 223 (333)
T 1wly_A 216 DVVYDSIG 223 (333)
T ss_dssp EEEEECSC
T ss_pred eEEEECCc
Confidence 99999987
|
| >1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1 | Back alignment and structure |
|---|
Probab=97.93 E-value=5e-05 Score=63.14 Aligned_cols=73 Identities=23% Similarity=0.209 Sum_probs=47.2
Q ss_pred cCCCe-EEEe-CCc-----------------hHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhh--------hhc-cCC
Q 023515 7 AAGKV-VCVT-GAS-----------------GYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHL--------LAL-DGA 58 (281)
Q Consensus 7 ~~~~~-ilIt-Gat-----------------G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~--------~~~-~~~ 58 (281)
+.+++ |||| |+| |..|.+++++++++|++|+.+.+...-.....++ ... ...
T Consensus 34 l~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga~V~lv~g~~sl~p~~r~~~~~~~~~~~~~~~~~ 113 (313)
T 1p9o_A 34 AQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARSAFPYAHRFPPQTWLSALRPSGPA 113 (313)
T ss_dssp HTTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTCEEEEEEETTSCCTTGGGSCHHHHHHHCEECCC-
T ss_pred hcCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCCEEEEEecCCCcCcchhccCccchhhhhcccccc
Confidence 46777 9999 557 9999999999999999999999864322211110 000 001
Q ss_pred CCcEEEEEcCCCCcCcHHHHh
Q 023515 59 SERLQLFKANLLEEGSFDSIV 79 (281)
Q Consensus 59 ~~~~~~~~~D~~~~~~~~~~~ 79 (281)
..++..+..|+...+++.+++
T Consensus 114 ~~~~~~i~v~v~sa~~m~~av 134 (313)
T 1p9o_A 114 LSGLLSLEAEENALPGFAEAL 134 (313)
T ss_dssp CCSEEEEEEETTTSTTHHHHH
T ss_pred ccccceeeeccccHHHHHHHH
Confidence 134556777777666655544
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=7.7e-06 Score=69.64 Aligned_cols=75 Identities=21% Similarity=0.214 Sum_probs=52.5
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----CC
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-----GC 82 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-----~~ 82 (281)
.+++|||+||+|.||..+++.+...|++|++++|++++.+.+.+. . + ... ..|..+.+++.+.++ ++
T Consensus 155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~--~-g--~~~---~~d~~~~~~~~~~~~~~~~~~~ 226 (345)
T 2j3h_A 155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTK--F-G--FDD---AFNYKEESDLTAALKRCFPNGI 226 (345)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT--S-C--CSE---EEETTSCSCSHHHHHHHCTTCE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH--c-C--Cce---EEecCCHHHHHHHHHHHhCCCC
Confidence 478999999999999999999999999999999876544333211 1 1 111 236655434443332 68
Q ss_pred cEeEEecc
Q 023515 83 DGVCHTAS 90 (281)
Q Consensus 83 d~Vih~a~ 90 (281)
|+||+++|
T Consensus 227 d~vi~~~g 234 (345)
T 2j3h_A 227 DIYFENVG 234 (345)
T ss_dssp EEEEESSC
T ss_pred cEEEECCC
Confidence 99999986
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.91 E-value=1.2e-05 Score=66.48 Aligned_cols=78 Identities=15% Similarity=0.250 Sum_probs=56.2
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
+++++++|+|+ |++|++++..|.+.|. +|++++|+.++.+.+.+...... ..+.....+ .+++.+.+++.|+|
T Consensus 125 l~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~--~~~~i~~~~---~~~l~~~l~~~DiV 198 (283)
T 3jyo_A 125 AKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAV--GREAVVGVD---ARGIEDVIAAADGV 198 (283)
T ss_dssp CCCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHH--TSCCEEEEC---STTHHHHHHHSSEE
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhc--CCceEEEcC---HHHHHHHHhcCCEE
Confidence 56899999997 8999999999999997 79999998877666544332111 112222222 34577778889999
Q ss_pred EEecc
Q 023515 86 CHTAS 90 (281)
Q Consensus 86 ih~a~ 90 (281)
||+..
T Consensus 199 InaTp 203 (283)
T 3jyo_A 199 VNATP 203 (283)
T ss_dssp EECSS
T ss_pred EECCC
Confidence 99864
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.88 E-value=1e-05 Score=69.14 Aligned_cols=74 Identities=23% Similarity=0.209 Sum_probs=52.3
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHh---c--CC
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV---D--GC 82 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~---~--~~ 82 (281)
.+++|+|+||+|.||..+++.+...|++|++++|++++.+....+ + .. ...|..+.+..+.+. . ++
T Consensus 170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----g--a~---~~~d~~~~~~~~~~~~~~~~~~~ 240 (351)
T 1yb5_A 170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQN----G--AH---EVFNHREVNYIDKIKKYVGEKGI 240 (351)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----T--CS---EEEETTSTTHHHHHHHHHCTTCE
T ss_pred CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHc----C--CC---EEEeCCCchHHHHHHHHcCCCCc
Confidence 478999999999999999999999999999999886544432221 1 11 123555544333332 2 68
Q ss_pred cEeEEecc
Q 023515 83 DGVCHTAS 90 (281)
Q Consensus 83 d~Vih~a~ 90 (281)
|+||+++|
T Consensus 241 D~vi~~~G 248 (351)
T 1yb5_A 241 DIIIEMLA 248 (351)
T ss_dssp EEEEESCH
T ss_pred EEEEECCC
Confidence 99999986
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00015 Score=60.67 Aligned_cols=113 Identities=13% Similarity=0.029 Sum_probs=72.9
Q ss_pred CeEEEeCCchHHHHHHHHHHHHC--CCEEEEEEcCCCCcchhhhhhhc----cCCCCcEEEEEcCCCCcCcHHHHhcCCc
Q 023515 10 KVVCVTGASGYIASWLVKLLLSR--GYTVKASVRDPNDPKKTRHLLAL----DGASERLQLFKANLLEEGSFDSIVDGCD 83 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~~~D~~~~~~~~~~~~~~d 83 (281)
|+|.|+|+ |.+|..++..|+.. |++|+++++++++.+.+...... .....++.. ..+.++ ++++|
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~-------t~d~~~-l~~aD 71 (310)
T 1guz_A 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG-------SNDYAD-TANSD 71 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEE-------ESCGGG-GTTCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEE-------CCCHHH-HCCCC
Confidence 47999998 99999999999985 79999999987654433211110 000111221 122334 77899
Q ss_pred EeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 84 GVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 84 ~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
+||-+++........ ..+.++.|+.....+.+.+.++.....+|.++.
T Consensus 72 vViiav~~p~~~g~~-r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tN 119 (310)
T 1guz_A 72 IVIITAGLPRKPGMT-REDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN 119 (310)
T ss_dssp EEEECCSCCCCTTCC-HHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS
T ss_pred EEEEeCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 999998753322221 236777899999999998888734445566543
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=1.1e-05 Score=68.98 Aligned_cols=74 Identities=14% Similarity=0.136 Sum_probs=52.9
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHh---c--CC
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV---D--GC 82 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~---~--~~ 82 (281)
.+++|+|+||+|.||..+++.+...|++|++++|++++.+.+.++ + .. ...|..+.+..+.+. . ++
T Consensus 162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----g--~~---~~~~~~~~~~~~~~~~~~~~~~~ 232 (354)
T 2j8z_A 162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKL----G--AA---AGFNYKKEDFSEATLKFTKGAGV 232 (354)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----T--CS---EEEETTTSCHHHHHHHHTTTSCE
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----C--Cc---EEEecCChHHHHHHHHHhcCCCc
Confidence 478999999999999999999999999999999886554443222 1 11 123555544333332 2 68
Q ss_pred cEeEEecc
Q 023515 83 DGVCHTAS 90 (281)
Q Consensus 83 d~Vih~a~ 90 (281)
|+||+++|
T Consensus 233 d~vi~~~G 240 (354)
T 2j8z_A 233 NLILDCIG 240 (354)
T ss_dssp EEEEESSC
T ss_pred eEEEECCC
Confidence 99999987
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=8e-05 Score=61.64 Aligned_cols=115 Identities=11% Similarity=0.046 Sum_probs=74.4
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCCcchhhhhhhc--cCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLAL--DGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
|||.|+|+ |+||+.++-.|+.++ .++.+++..+...+-....+.. ............ .|+ +.++++|+|
T Consensus 1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~--~d~----~~~~~aDvV 73 (294)
T 2x0j_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG--ADY----SLLKGSEII 73 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEE--SCG----GGGTTCSEE
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecC--CCH----HHhCCCCEE
Confidence 57999995 999999999999887 5899999876332211111110 000011222211 122 246789999
Q ss_pred EEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
|-.||......... .+.++.|..-.+.+.+.+.++.....++.+|-
T Consensus 74 vitAG~prkpGmtR-~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsN 119 (294)
T 2x0j_A 74 VVTAGLARKPGMTR-LDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (294)
T ss_dssp EECCCCCCCSSSCH-HHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred EEecCCCCCCCCch-HHHHHHHHHHHHHHHHHHHhcCCceEEEEecC
Confidence 99999765544433 48899999999999999999844344444443
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=97.84 E-value=9.8e-05 Score=62.03 Aligned_cols=115 Identities=12% Similarity=-0.009 Sum_probs=76.5
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCC--EEEEEEcCCCCcchhhhhhh--cc-CCCCcEEEEEcCCCCcCcHHHHhcCC
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLA--LD-GASERLQLFKANLLEEGSFDSIVDGC 82 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~--~~-~~~~~~~~~~~D~~~~~~~~~~~~~~ 82 (281)
.++||.|+|+ |.+|..++..|+..|. +|+++++++++.+....... .. ....++.. ..| . ++ ++++
T Consensus 20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~-t~d---~---~~-~~da 90 (330)
T 3ldh_A 20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVS-GKD---Y---SV-SAGS 90 (330)
T ss_dssp CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEE-ESS---S---CS-CSSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEE-cCC---H---HH-hCCC
Confidence 3579999998 9999999999999885 89999986644332111111 01 11112221 122 2 22 6789
Q ss_pred cEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 83 DGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 83 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
|+||-.||......+.. .+.+..|+.-.+.+.+.+.++.+...++.+|-
T Consensus 91 DiVIitaG~p~kpG~tR-~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtN 139 (330)
T 3ldh_A 91 KLVVITAGARQQEGESR-LNLVQRNVNIFKFIIPNIVKHSPDCLKELHPE 139 (330)
T ss_dssp SEEEECCSCCCCSSCCT-TGGGHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred CEEEEeCCCCCCCCCCH-HHHHHhhHHHHHHHHHHHHhhCCCceEEeCCC
Confidence 99999998755443333 37888999999999999998744445666654
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=1.7e-05 Score=67.85 Aligned_cols=73 Identities=18% Similarity=0.116 Sum_probs=50.7
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----CCcE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----GCDG 84 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~d~ 84 (281)
++|+|+||+|.||..+++.+...|. +|+++++++++.+.+.+. . + .. ...|..+.+..+.+.+ ++|+
T Consensus 162 ~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~--~-g--~~---~~~d~~~~~~~~~~~~~~~~~~d~ 233 (357)
T 2zb4_A 162 KTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSE--L-G--FD---AAINYKKDNVAEQLRESCPAGVDV 233 (357)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT--S-C--CS---EEEETTTSCHHHHHHHHCTTCEEE
T ss_pred cEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH--c-C--Cc---eEEecCchHHHHHHHHhcCCCCCE
Confidence 8999999999999999999999999 999999876443333221 1 1 11 1246655432222222 5899
Q ss_pred eEEecc
Q 023515 85 VCHTAS 90 (281)
Q Consensus 85 Vih~a~ 90 (281)
||+++|
T Consensus 234 vi~~~G 239 (357)
T 2zb4_A 234 YFDNVG 239 (357)
T ss_dssp EEESCC
T ss_pred EEECCC
Confidence 999987
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0001 Score=61.59 Aligned_cols=113 Identities=18% Similarity=0.167 Sum_probs=67.4
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCC--EEEEEEcCCCCcchhhhhhhc-cCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLAL-DGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
|||.|+|+ |.+|..++..|+..|+ +|+++++++++.......... ........+.. .+ .+.++++|+||
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~---~~----~~a~~~aDvVI 72 (304)
T 2v6b_A 1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWH---GG----HSELADAQVVI 72 (304)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEE---EC----GGGGTTCSEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEE---CC----HHHhCCCCEEE
Confidence 47999998 9999999999999998 999999976433221111110 00001222221 12 23577999999
Q ss_pred EecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEec
Q 023515 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131 (281)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S 131 (281)
.+++........ ..+.+..|+.....+++.+.++.....+|.+|
T Consensus 73 i~~~~~~~~g~~-r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~t 116 (304)
T 2v6b_A 73 LTAGANQKPGES-RLDLLEKNADIFRELVPQITRAAPDAVLLVTS 116 (304)
T ss_dssp ECC-------------CHHHHHHHHHHHHHHHHHHCSSSEEEECS
T ss_pred EcCCCCCCCCCc-HHHHHHhHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 998754332222 23677889999999999988863333455544
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=1.3e-05 Score=69.83 Aligned_cols=72 Identities=19% Similarity=0.271 Sum_probs=59.4
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHH-hcCCcEeEE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI-VDGCDGVCH 87 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~Vih 87 (281)
+++|+|.|. |.+|+.+++.|.+.|++|++++++++..+.+.. .++.++.||.++++.+.++ ++++|+||-
T Consensus 4 ~~~viIiG~-Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~--------~g~~vi~GDat~~~~L~~agi~~A~~viv 74 (413)
T 3l9w_A 4 GMRVIIAGF-GRFGQITGRLLLSSGVKMVVLDHDPDHIETLRK--------FGMKVFYGDATRMDLLESAGAAKAEVLIN 74 (413)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH--------TTCCCEESCTTCHHHHHHTTTTTCSEEEE
T ss_pred CCeEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh--------CCCeEEEcCCCCHHHHHhcCCCccCEEEE
Confidence 467999996 999999999999999999999998765444332 2577899999999888887 678999887
Q ss_pred ec
Q 023515 88 TA 89 (281)
Q Consensus 88 ~a 89 (281)
+.
T Consensus 75 ~~ 76 (413)
T 3l9w_A 75 AI 76 (413)
T ss_dssp CC
T ss_pred CC
Confidence 64
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=97.81 E-value=3.4e-05 Score=62.55 Aligned_cols=106 Identities=14% Similarity=0.101 Sum_probs=66.8
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCC-------------------cchhhhhhhccCCCCcEEEEE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPND-------------------PKKTRHLLALDGASERLQLFK 66 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~-------------------~~~~~~~~~~~~~~~~~~~~~ 66 (281)
+++++|+|.|+ |.+|+++++.|+..|. ++++++++.-. .+.+.+.........+++.+.
T Consensus 29 l~~~~VlVvG~-Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~ 107 (249)
T 1jw9_B 29 LKDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVN 107 (249)
T ss_dssp HHHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred HhCCeEEEEee-CHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEe
Confidence 45689999995 8999999999999996 89999988622 222211111111113456666
Q ss_pred cCCCCcCcHHHHhcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 67 ANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 67 ~D~~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
.++++ +.+.+++++.|+||.+.. .. ..-..+.++|.+. +. .+|+.+.
T Consensus 108 ~~~~~-~~~~~~~~~~DvVi~~~d--------~~--------~~~~~l~~~~~~~-~~-p~i~~~~ 154 (249)
T 1jw9_B 108 ALLDD-AELAALIAEHDLVLDCTD--------NV--------AVRNQLNAGCFAA-KV-PLVSGAA 154 (249)
T ss_dssp SCCCH-HHHHHHHHTSSEEEECCS--------SH--------HHHHHHHHHHHHH-TC-CEEEEEE
T ss_pred ccCCH-hHHHHHHhCCCEEEEeCC--------CH--------HHHHHHHHHHHHc-CC-CEEEeee
Confidence 66653 456677889999998741 11 1224556667765 43 3666543
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=97.80 E-value=3.6e-05 Score=64.76 Aligned_cols=114 Identities=18% Similarity=0.132 Sum_probs=72.8
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhh-hhhh-c--cCCCCcEEEEEcCCCCcCcHHHHhcCCc
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTR-HLLA-L--DGASERLQLFKANLLEEGSFDSIVDGCD 83 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~-~~~~-~--~~~~~~~~~~~~D~~~~~~~~~~~~~~d 83 (281)
+++|.|.|+ |.+|..++..|+..|+ +|++++++++..+... .+.. . .....++... .++ +.++++|
T Consensus 4 ~~kI~VIGa-G~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t-------~d~-~a~~~aD 74 (317)
T 2ewd_A 4 RRKIAVIGS-GQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGT-------DDY-ADISGSD 74 (317)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEE-------SCG-GGGTTCS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEEC-------CCH-HHhCCCC
Confidence 568999997 9999999999999998 9999999875443321 1100 0 0001122211 223 4577999
Q ss_pred EeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 84 GVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 84 ~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
+||-+++......... .+....|+.....+++.+.+..+...+|.+|.
T Consensus 75 iVi~avg~p~~~g~~r-~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sN 122 (317)
T 2ewd_A 75 VVIITASIPGRPKDDR-SELLFGNARILDSVAEGVKKYCPNAFVICITN 122 (317)
T ss_dssp EEEECCCCSSCCSSCG-GGGHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred EEEEeCCCCCCCCCcH-HHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 9999997644332222 25556688888888888887634334555554
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=97.80 E-value=6.6e-06 Score=60.82 Aligned_cols=71 Identities=17% Similarity=0.260 Sum_probs=52.7
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 87 (281)
.+++|+|.|+ |.+|+.+++.|.+.|++|++.+|++++...+.... +.. ....+++.++++++|+||.
T Consensus 20 ~~~~v~iiG~-G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~-------~~~-----~~~~~~~~~~~~~~Divi~ 86 (144)
T 3oj0_A 20 GGNKILLVGN-GMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKY-------EYE-----YVLINDIDSLIKNNDVIIT 86 (144)
T ss_dssp CCCEEEEECC-SHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHH-------TCE-----EEECSCHHHHHHTCSEEEE
T ss_pred cCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHh-------CCc-----eEeecCHHHHhcCCCEEEE
Confidence 4789999995 99999999999999999999999876554433221 111 1233457778889999999
Q ss_pred eccc
Q 023515 88 TASP 91 (281)
Q Consensus 88 ~a~~ 91 (281)
+.+.
T Consensus 87 at~~ 90 (144)
T 3oj0_A 87 ATSS 90 (144)
T ss_dssp CSCC
T ss_pred eCCC
Confidence 8753
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.80 E-value=3e-06 Score=70.33 Aligned_cols=78 Identities=14% Similarity=0.098 Sum_probs=51.5
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+++++++|||++ .+|+++++.|++.| +|++.+|+.++.+.+......... ... .+.+|+.+ +.+.+.++|+||
T Consensus 126 l~~k~vlV~GaG-giG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~-~~~-~~~~d~~~---~~~~~~~~DilV 198 (287)
T 1nvt_A 126 VKDKNIVIYGAG-GAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLN-KKF-GEEVKFSG---LDVDLDGVDIII 198 (287)
T ss_dssp CCSCEEEEECCS-HHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHT-CCH-HHHEEEEC---TTCCCTTCCEEE
T ss_pred cCCCEEEEECch-HHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcc-ccc-ceeEEEee---HHHhhCCCCEEE
Confidence 468899999985 99999999999999 999999986555444332211000 000 01123333 133456899999
Q ss_pred Eeccc
Q 023515 87 HTASP 91 (281)
Q Consensus 87 h~a~~ 91 (281)
|+++.
T Consensus 199 n~ag~ 203 (287)
T 1nvt_A 199 NATPI 203 (287)
T ss_dssp ECSCT
T ss_pred ECCCC
Confidence 99975
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=3.6e-05 Score=63.15 Aligned_cols=35 Identities=26% Similarity=0.395 Sum_probs=28.5
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHC-CCEEEEEEcC
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSR-GYTVKASVRD 42 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~-g~~V~~~~r~ 42 (281)
++++|.|+|++|.+|+.+++.+.+. +++++++.+.
T Consensus 4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~ 39 (273)
T 1dih_A 4 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALER 39 (273)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECC
T ss_pred CCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence 4568999999999999999998854 6888855443
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=1.9e-05 Score=66.97 Aligned_cols=74 Identities=16% Similarity=0.196 Sum_probs=52.3
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchh-hhhhhccCCCCcEEEEEcCCCCcCcHHHHh----cCC
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKT-RHLLALDGASERLQLFKANLLEEGSFDSIV----DGC 82 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~----~~~ 82 (281)
.+++|||+||+|.||..+++.+...|.+|++++|++++.+.+ ..+ +... ..|..+.+..+.+. +++
T Consensus 149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~--------g~~~-~~~~~~~~~~~~~~~~~~~~~ 219 (336)
T 4b7c_A 149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEEL--------GFDG-AIDYKNEDLAAGLKRECPKGI 219 (336)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTT--------CCSE-EEETTTSCHHHHHHHHCTTCE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc--------CCCE-EEECCCHHHHHHHHHhcCCCc
Confidence 478999999999999999999999999999999887654443 222 1111 23555544333332 268
Q ss_pred cEeEEecc
Q 023515 83 DGVCHTAS 90 (281)
Q Consensus 83 d~Vih~a~ 90 (281)
|+||+++|
T Consensus 220 d~vi~~~g 227 (336)
T 4b7c_A 220 DVFFDNVG 227 (336)
T ss_dssp EEEEESSC
T ss_pred eEEEECCC
Confidence 99999986
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.78 E-value=1.1e-05 Score=71.47 Aligned_cols=72 Identities=11% Similarity=0.178 Sum_probs=58.6
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHH-hcCCcEeEE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI-VDGCDGVCH 87 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~Vih 87 (281)
.|+|+|.|+ |.+|+++++.|.++|++|++++++++....+... -++..+.||-++++.++++ ++++|.+|-
T Consensus 3 ~M~iiI~G~-G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~-------~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia 74 (461)
T 4g65_A 3 AMKIIILGA-GQVGGTLAENLVGENNDITIVDKDGDRLRELQDK-------YDLRVVNGHASHPDVLHEAGAQDADMLVA 74 (461)
T ss_dssp CEEEEEECC-SHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHH-------SSCEEEESCTTCHHHHHHHTTTTCSEEEE
T ss_pred cCEEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHh-------cCcEEEEEcCCCHHHHHhcCCCcCCEEEE
Confidence 458999996 9999999999999999999999887655443322 2578899999999988887 568999884
Q ss_pred e
Q 023515 88 T 88 (281)
Q Consensus 88 ~ 88 (281)
+
T Consensus 75 ~ 75 (461)
T 4g65_A 75 V 75 (461)
T ss_dssp C
T ss_pred E
Confidence 3
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=2.3e-05 Score=65.45 Aligned_cols=80 Identities=15% Similarity=0.153 Sum_probs=53.2
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCC---CCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCC
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDP---NDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGC 82 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~---~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 82 (281)
.++++++|+|+ |++|++++..|.+.|. +|+++.|+. ++.+.+.+...... .......++.+.+.+.+.+++.
T Consensus 146 l~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~---~~~v~~~~~~~l~~~~~~l~~~ 221 (312)
T 3t4e_A 146 MRGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENT---DCVVTVTDLADQHAFTEALASA 221 (312)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHS---SCEEEEEETTCHHHHHHHHHHC
T ss_pred cCCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhcc---CcceEEechHhhhhhHhhccCc
Confidence 46899999997 8999999999999997 899999984 33443333221111 1222223443322335567789
Q ss_pred cEeEEecc
Q 023515 83 DGVCHTAS 90 (281)
Q Consensus 83 d~Vih~a~ 90 (281)
|+|||+..
T Consensus 222 DiIINaTp 229 (312)
T 3t4e_A 222 DILTNGTK 229 (312)
T ss_dssp SEEEECSS
T ss_pred eEEEECCc
Confidence 99999864
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00015 Score=60.58 Aligned_cols=114 Identities=13% Similarity=0.100 Sum_probs=75.1
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCCcchhhhhhhc-cCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLAL-DGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
|||.|+|+ |.+|..++..|+..+ .+++++++++++.+........ .....++.+.. + + .++++++|+||
T Consensus 1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~-~--~----~~a~~~aD~Vi 72 (310)
T 2xxj_A 1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWA-G--S----YGDLEGARAVV 72 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEE-C--C----GGGGTTEEEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEE-C--C----HHHhCCCCEEE
Confidence 58999998 999999999999887 6899999875443321111111 00011233322 1 2 34578999999
Q ss_pred EecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
..++........ .......|+.....+.+.+.++.....++.+|-
T Consensus 73 i~ag~~~~~g~~-r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 117 (310)
T 2xxj_A 73 LAAGVAQRPGET-RLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATN 117 (310)
T ss_dssp ECCCCCCCTTCC-HHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred ECCCCCCCCCcC-HHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 999865443332 236778899999999999998744455666543
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.72 E-value=2.8e-05 Score=68.57 Aligned_cols=80 Identities=15% Similarity=0.103 Sum_probs=52.0
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEE-EE-----EcCCCCcCcHHHHhcCCc
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQ-LF-----KANLLEEGSFDSIVDGCD 83 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~-----~~D~~~~~~~~~~~~~~d 83 (281)
|+|.|.| +|++|..++..|++.|++|++++|++++.+.+.+-...... .+.. .+ .+.+.-..++.++++++|
T Consensus 3 mkI~VIG-~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e-~gl~~~l~~~~~~~~l~~t~d~~ea~~~aD 80 (450)
T 3gg2_A 3 LDIAVVG-IGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYE-PGLEKMIARNVKAGRLRFGTEIEQAVPEAD 80 (450)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCS-TTHHHHHHHHHHTTSEEEESCHHHHGGGCS
T ss_pred CEEEEEC-cCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccC-CCHHHHHHhhcccCcEEEECCHHHHHhcCC
Confidence 5899998 59999999999999999999999987655554331100000 0000 00 112222245677788999
Q ss_pred EeEEeccc
Q 023515 84 GVCHTASP 91 (281)
Q Consensus 84 ~Vih~a~~ 91 (281)
+||-+...
T Consensus 81 vViiaVpt 88 (450)
T 3gg2_A 81 IIFIAVGT 88 (450)
T ss_dssp EEEECCCC
T ss_pred EEEEEcCC
Confidence 99988753
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0002 Score=59.99 Aligned_cols=113 Identities=12% Similarity=0.061 Sum_probs=71.0
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCCcchhhhhhh--ccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLA--LDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
|+|.|.| +|.+|..++..|++.| ++|++++|++++.+.+..... .......+..... + . +.++++|+|
T Consensus 2 ~kI~VIG-aG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---d---~-~~~~~aDvV 73 (309)
T 1hyh_A 2 RKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVIN---D---W-AALADADVV 73 (309)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEES---C---G-GGGTTCSEE
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeC---C---H-HHhCCCCEE
Confidence 5899999 7999999999999999 899999998654443322111 1000112222212 2 3 456789999
Q ss_pred EEecccCCC----CCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEec
Q 023515 86 CHTASPFYH----DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131 (281)
Q Consensus 86 ih~a~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S 131 (281)
|-+++.... .... .......|+.....+++.+.+......+|.++
T Consensus 74 iiav~~~~~~~~~~g~~-r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~t 122 (309)
T 1hyh_A 74 ISTLGNIKLQQDNPTGD-RFAELKFTSSMVQSVGTNLKESGFHGVLVVIS 122 (309)
T ss_dssp EECCSCGGGTC--------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred EEecCCcccCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEc
Confidence 998865331 1111 22667788888889999888763333455443
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.70 E-value=2.7e-05 Score=64.79 Aligned_cols=75 Identities=19% Similarity=0.109 Sum_probs=53.7
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
+.+++++|+|+ |.+|++++..|++.|. +|++.+|+.++.+.+.+..... .. ++.+.+++.+.++++|+|
T Consensus 139 l~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~---~~------~~~~~~~~~~~~~~aDiv 208 (297)
T 2egg_A 139 LDGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDER---RS------AYFSLAEAETRLAEYDII 208 (297)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSS---SC------CEECHHHHHHTGGGCSEE
T ss_pred CCCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhc---cC------ceeeHHHHHhhhccCCEE
Confidence 46889999997 7899999999999997 9999999876655543322110 00 111223566677899999
Q ss_pred EEeccc
Q 023515 86 CHTASP 91 (281)
Q Consensus 86 ih~a~~ 91 (281)
|++.+.
T Consensus 209 In~t~~ 214 (297)
T 2egg_A 209 INTTSV 214 (297)
T ss_dssp EECSCT
T ss_pred EECCCC
Confidence 999864
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00011 Score=62.39 Aligned_cols=96 Identities=18% Similarity=0.193 Sum_probs=57.6
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhhhh-ccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLA-LDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
|++|.|.||||++|+.+++.|.+++ .+++.+.++......+..... ..+. ..+ .+.+. ++ ++++|+||
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~-~~~-----~~~~~---~~-~~~vDvV~ 73 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGR-TNL-----KFVPP---EK-LEPADILV 73 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTT-CCC-----BCBCG---GG-CCCCSEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCc-ccc-----cccch---hH-hcCCCEEE
Confidence 5689999999999999999999876 488887664433222221110 0000 011 12222 22 37899999
Q ss_pred EecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccc
Q 023515 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (281)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (281)
.+++.. .+..++..+.+. ++ ++|-+|+.
T Consensus 74 ~a~g~~-----------------~s~~~a~~~~~a-G~-~VId~Sa~ 101 (345)
T 2ozp_A 74 LALPHG-----------------VFAREFDRYSAL-AP-VLVDLSAD 101 (345)
T ss_dssp ECCCTT-----------------HHHHTHHHHHTT-CS-EEEECSST
T ss_pred EcCCcH-----------------HHHHHHHHHHHC-CC-EEEEcCcc
Confidence 887421 123445555565 54 58888874
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=1e-05 Score=72.88 Aligned_cols=72 Identities=21% Similarity=0.152 Sum_probs=45.7
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHH-HhcCCcEe
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDS-IVDGCDGV 85 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~-~~~~~d~V 85 (281)
+++++++|||| |++|++++..|++.|++|++++|+.++.+.+..... ..+. ++.+ +.+ ....+|++
T Consensus 362 l~~k~vlV~Ga-GGig~aia~~L~~~G~~V~i~~R~~~~a~~la~~~~-----~~~~----~~~d---l~~~~~~~~Dil 428 (523)
T 2o7s_A 362 LASKTVVVIGA-GGAGKALAYGAKEKGAKVVIANRTYERALELAEAIG-----GKAL----SLTD---LDNYHPEDGMVL 428 (523)
T ss_dssp ----CEEEECC-SHHHHHHHHHHHHHCC-CEEEESSHHHHHHHHHHTT-----C-CE----ETTT---TTTC--CCSEEE
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC-----Ccee----eHHH---hhhccccCceEE
Confidence 45789999999 799999999999999999999998665544433221 1111 1222 222 12358999
Q ss_pred EEeccc
Q 023515 86 CHTASP 91 (281)
Q Consensus 86 ih~a~~ 91 (281)
||+++.
T Consensus 429 VN~agv 434 (523)
T 2o7s_A 429 ANTTSM 434 (523)
T ss_dssp EECSST
T ss_pred EECCCC
Confidence 999985
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.68 E-value=2.8e-05 Score=66.16 Aligned_cols=97 Identities=16% Similarity=0.191 Sum_probs=64.2
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCc---HHHHhc--CC
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGS---FDSIVD--GC 82 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~---~~~~~~--~~ 82 (281)
.+++|||+||+|.||..+++.+...|++|++++|++++.+.+..+ + ... ..|.++.+. +.++.. ++
T Consensus 166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~----g--a~~---~~d~~~~~~~~~~~~~~~~~~~ 236 (343)
T 2eih_A 166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKAL----G--ADE---TVNYTHPDWPKEVRRLTGGKGA 236 (343)
T ss_dssp TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----T--CSE---EEETTSTTHHHHHHHHTTTTCE
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhc----C--CCE---EEcCCcccHHHHHHHHhCCCCc
Confidence 478999999999999999999999999999999876554443322 1 111 136655432 222322 68
Q ss_pred cEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccc
Q 023515 83 DGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (281)
Q Consensus 83 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (281)
|+||+++|. . .....++.+++. .+++.+++.
T Consensus 237 d~vi~~~g~-~----------------~~~~~~~~l~~~---G~~v~~g~~ 267 (343)
T 2eih_A 237 DKVVDHTGA-L----------------YFEGVIKATANG---GRIAIAGAS 267 (343)
T ss_dssp EEEEESSCS-S----------------SHHHHHHHEEEE---EEEEESSCC
T ss_pred eEEEECCCH-H----------------HHHHHHHhhccC---CEEEEEecC
Confidence 999999871 1 113344555543 578888764
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=97.67 E-value=7.1e-05 Score=63.63 Aligned_cols=36 Identities=31% Similarity=0.428 Sum_probs=30.4
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCC-----C-EEEEEEcCC
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRG-----Y-TVKASVRDP 43 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g-----~-~V~~~~r~~ 43 (281)
+|++|+|.||||++|+.+++.|++++ + +++.+.++.
T Consensus 8 ~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~ 49 (352)
T 2nqt_A 8 NATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAAT 49 (352)
T ss_dssp SCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESS
T ss_pred cCCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCC
Confidence 46799999999999999999999887 4 777776543
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=97.66 E-value=7.1e-05 Score=63.51 Aligned_cols=74 Identities=12% Similarity=0.204 Sum_probs=53.2
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHh---c--CC
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV---D--GC 82 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~---~--~~ 82 (281)
.+.+|+|+||+|.||..+++.+...|.+|+++++++++.+.+.++. .... .|..+.+..+.+. . ++
T Consensus 144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lg------a~~~---~~~~~~~~~~~~~~~~~~~g~ 214 (340)
T 3gms_A 144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLG------AAYV---IDTSTAPLYETVMELTNGIGA 214 (340)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHT------CSEE---EETTTSCHHHHHHHHTTTSCE
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCC------CcEE---EeCCcccHHHHHHHHhCCCCC
Confidence 4789999999999999999999889999999999887766554431 1111 2444433333222 2 68
Q ss_pred cEeEEecc
Q 023515 83 DGVCHTAS 90 (281)
Q Consensus 83 d~Vih~a~ 90 (281)
|+||+++|
T Consensus 215 Dvvid~~g 222 (340)
T 3gms_A 215 DAAIDSIG 222 (340)
T ss_dssp EEEEESSC
T ss_pred cEEEECCC
Confidence 99999986
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.64 E-value=4.2e-05 Score=65.32 Aligned_cols=74 Identities=19% Similarity=0.171 Sum_probs=52.6
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHh----cCCc
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV----DGCD 83 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~----~~~d 83 (281)
.+.+|+|+||+|.||..+++.+...|.+|+++++++++.+.+.++. ... ..|..+.+..+.+. +++|
T Consensus 167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lG------a~~---~~~~~~~~~~~~~~~~~~~g~D 237 (353)
T 4dup_A 167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLG------AKR---GINYRSEDFAAVIKAETGQGVD 237 (353)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHT------CSE---EEETTTSCHHHHHHHHHSSCEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcC------CCE---EEeCCchHHHHHHHHHhCCCce
Confidence 4789999999999999999999999999999998876554443321 111 13444433333222 2689
Q ss_pred EeEEecc
Q 023515 84 GVCHTAS 90 (281)
Q Consensus 84 ~Vih~a~ 90 (281)
+||+++|
T Consensus 238 vvid~~g 244 (353)
T 4dup_A 238 IILDMIG 244 (353)
T ss_dssp EEEESCC
T ss_pred EEEECCC
Confidence 9999987
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=97.64 E-value=7.4e-05 Score=63.81 Aligned_cols=36 Identities=28% Similarity=0.411 Sum_probs=30.5
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCC
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDP 43 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~ 43 (281)
++++|.|.||+|++|+.+++.|.+++ .+++.+.++.
T Consensus 15 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~ 51 (359)
T 1xyg_A 15 KDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADR 51 (359)
T ss_dssp CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCST
T ss_pred cCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCch
Confidence 45689999999999999999999886 4888876654
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00014 Score=61.66 Aligned_cols=94 Identities=15% Similarity=0.124 Sum_probs=54.7
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCC---CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRG---YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
+++|+|.||||++|+.+++.|.+++ .+++.+..+......+. .. ...+.+ .|. +++. ++++|+|
T Consensus 6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~----~~--g~~i~~--~~~-~~~~----~~~~DvV 72 (340)
T 2hjs_A 6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMG----FA--ESSLRV--GDV-DSFD----FSSVGLA 72 (340)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEE----ET--TEEEEC--EEG-GGCC----GGGCSEE
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCccc----cC--CcceEE--ecC-CHHH----hcCCCEE
Confidence 4689999999999999999999765 35565543221111100 00 011222 222 2222 3589999
Q ss_pred EEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccce
Q 023515 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMA 134 (281)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~ 134 (281)
|.+.+. ..+..++..+.+. +. ++|-+|+..
T Consensus 73 ~~a~g~-----------------~~s~~~a~~~~~a-G~-kvId~Sa~~ 102 (340)
T 2hjs_A 73 FFAAAA-----------------EVSRAHAERARAA-GC-SVIDLSGAL 102 (340)
T ss_dssp EECSCH-----------------HHHHHHHHHHHHT-TC-EEEETTCTT
T ss_pred EEcCCc-----------------HHHHHHHHHHHHC-CC-EEEEeCCCC
Confidence 988642 1234556666666 65 477777753
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.63 E-value=4.5e-05 Score=60.59 Aligned_cols=68 Identities=13% Similarity=0.039 Sum_probs=47.6
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEE-EEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKA-SVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
|+||+|.|.| +|.+|.++++.|.+.|++|++ .+|++++.+.+.... ++... .+..+.++++|+|
T Consensus 21 m~mmkI~IIG-~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~-------g~~~~-------~~~~~~~~~aDvV 85 (220)
T 4huj_A 21 QSMTTYAIIG-AGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRF-------GASVK-------AVELKDALQADVV 85 (220)
T ss_dssp GGSCCEEEEE-CHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHH-------TTTEE-------ECCHHHHTTSSEE
T ss_pred hcCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHh-------CCCcc-------cChHHHHhcCCEE
Confidence 4467899999 799999999999999999999 788766554433221 11111 1123346789999
Q ss_pred EEec
Q 023515 86 CHTA 89 (281)
Q Consensus 86 ih~a 89 (281)
|-+.
T Consensus 86 ilav 89 (220)
T 4huj_A 86 ILAV 89 (220)
T ss_dssp EEES
T ss_pred EEeC
Confidence 8765
|
| >3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=4.8e-05 Score=57.05 Aligned_cols=72 Identities=14% Similarity=0.148 Sum_probs=51.0
Q ss_pred chHHHHHHHHHHHHCCCEEEEEEcCCCCcchh---hhhhhccCCCCcEEEEEcCCCCc--CcHHHHhc------CCcEeE
Q 023515 18 SGYIASWLVKLLLSRGYTVKASVRDPNDPKKT---RHLLALDGASERLQLFKANLLEE--GSFDSIVD------GCDGVC 86 (281)
Q Consensus 18 tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~---~~~~~~~~~~~~~~~~~~D~~~~--~~~~~~~~------~~d~Vi 86 (281)
+|.++.+.++.|.+.|.+|++..|........ ....... +.++..+.+|++++ +++.++++ +-|++|
T Consensus 25 s~~p~~a~a~~La~~Ga~vvi~~r~~~e~~~~~~~~~~~~~~--G~~~~~i~~Dv~~~~~~~v~~~~~~i~~~~G~dVLV 102 (157)
T 3gxh_A 25 SGLPNEQQFSLLKQAGVDVVINLMPDSSKDAHPDEGKLVTQA--GMDYVYIPVDWQNPKVEDVEAFFAAMDQHKGKDVLV 102 (157)
T ss_dssp EBCCCHHHHHHHHHTTCCEEEECSCTTSTTSCTTHHHHHHHT--TCEEEECCCCTTSCCHHHHHHHHHHHHHTTTSCEEE
T ss_pred cCCCCHHHHHHHHHcCCCEEEECCCcccccccccHHHHHHHc--CCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 46788999999999999999888865443221 1221111 24677888999998 77776654 239999
Q ss_pred Eeccc
Q 023515 87 HTASP 91 (281)
Q Consensus 87 h~a~~ 91 (281)
||||.
T Consensus 103 nnAgg 107 (157)
T 3gxh_A 103 HCLAN 107 (157)
T ss_dssp ECSBS
T ss_pred ECCCC
Confidence 99974
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0001 Score=60.31 Aligned_cols=75 Identities=15% Similarity=0.167 Sum_probs=46.7
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHC-CCEEEEE-EcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSR-GYTVKAS-VRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~-g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~ 84 (281)
|+|+||.|+|++|.+|+.+++.+.++ ++++++. +|+.+...- ....... +.. .++.-.++++++++++|+
T Consensus 5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G-~d~gel~----g~~---~gv~v~~dl~~ll~~~DV 76 (272)
T 4f3y_A 5 MSSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLG-QDAGAFL----GKQ---TGVALTDDIERVCAEADY 76 (272)
T ss_dssp -CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTT-SBTTTTT----TCC---CSCBCBCCHHHHHHHCSE
T ss_pred ccccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCccccc-ccHHHHh----CCC---CCceecCCHHHHhcCCCE
Confidence 34679999999999999999999876 5777774 655432110 0000000 110 023334567777778899
Q ss_pred eEEec
Q 023515 85 VCHTA 89 (281)
Q Consensus 85 Vih~a 89 (281)
||.+.
T Consensus 77 VIDfT 81 (272)
T 4f3y_A 77 LIDFT 81 (272)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 99875
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=6.4e-05 Score=59.49 Aligned_cols=65 Identities=20% Similarity=0.222 Sum_probs=47.8
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEe
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~ 88 (281)
+++|.|.| +|.+|+++++.|.+.|++|++.+|++++.+.+.. .++... ++.++++++|+||.+
T Consensus 28 ~~~I~iiG-~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~--------~g~~~~--------~~~~~~~~~DvVi~a 90 (215)
T 2vns_A 28 APKVGILG-SGDFARSLATRLVGSGFKVVVGSRNPKRTARLFP--------SAAQVT--------FQEEAVSSPEVIFVA 90 (215)
T ss_dssp -CCEEEEC-CSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSB--------TTSEEE--------EHHHHTTSCSEEEEC
T ss_pred CCEEEEEc-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--------cCCcee--------cHHHHHhCCCEEEEC
Confidence 56899999 7999999999999999999999987654332211 122221 456678899999987
Q ss_pred cc
Q 023515 89 AS 90 (281)
Q Consensus 89 a~ 90 (281)
..
T Consensus 91 v~ 92 (215)
T 2vns_A 91 VF 92 (215)
T ss_dssp SC
T ss_pred CC
Confidence 64
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00082 Score=57.33 Aligned_cols=119 Identities=13% Similarity=0.079 Sum_probs=73.7
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCC--E---EEEEEcCCCCc-chhhhh-hhc-cCCCCcEEEEEcCCCCcCcHHHHhc
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGY--T---VKASVRDPNDP-KKTRHL-LAL-DGASERLQLFKANLLEEGSFDSIVD 80 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~--~---V~~~~r~~~~~-~~~~~~-~~~-~~~~~~~~~~~~D~~~~~~~~~~~~ 80 (281)
.+||.|+||+|.||.+++-.|+..+. + +.+.+...+.. +.++.. ..+ +....-..-+. +. ....+.++
T Consensus 32 ~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~--i~--~~~y~~~~ 107 (375)
T 7mdh_A 32 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVS--IG--IDPYEVFE 107 (375)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEE--EE--SCHHHHTT
T ss_pred CCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcE--Ee--cCCHHHhC
Confidence 56899999999999999999998762 2 66655543321 111111 011 11000011111 11 13456788
Q ss_pred CCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhC-CCccEEEEecc
Q 023515 81 GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKF-PSIKRVVLTSS 132 (281)
Q Consensus 81 ~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~SS 132 (281)
++|+||-.||......+. ..+.++.|+.-.+.+.+.+.++ .....++.+|.
T Consensus 108 daDvVVitag~prkpG~t-R~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsN 159 (375)
T 7mdh_A 108 DVDWALLIGAKPRGPGME-RAALLDINGQIFADQGKALNAVASKNVKVLVVGN 159 (375)
T ss_dssp TCSEEEECCCCCCCTTCC-HHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred CCCEEEEcCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 999999999875543333 3488999999999999999874 23445666654
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=97.61 E-value=2.2e-05 Score=67.25 Aligned_cols=76 Identities=14% Similarity=0.167 Sum_probs=55.1
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
.++++|+|+|+ |.+|+.+++.|...|.+|++++|++++.+.+..... ..+..+ ..+.+++.+.++++|+||
T Consensus 165 l~~~~VlViGa-GgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~-----~~~~~~---~~~~~~~~~~~~~~DvVI 235 (361)
T 1pjc_A 165 VKPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFG-----SRVELL---YSNSAEIETAVAEADLLI 235 (361)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-----GGSEEE---ECCHHHHHHHHHTCSEEE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhC-----ceeEee---eCCHHHHHHHHcCCCEEE
Confidence 45689999998 999999999999999999999998765544433221 112111 123345667777999999
Q ss_pred Eeccc
Q 023515 87 HTASP 91 (281)
Q Consensus 87 h~a~~ 91 (281)
++++.
T Consensus 236 ~~~~~ 240 (361)
T 1pjc_A 236 GAVLV 240 (361)
T ss_dssp ECCCC
T ss_pred ECCCc
Confidence 99864
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=97.61 E-value=5.8e-05 Score=62.46 Aligned_cols=65 Identities=18% Similarity=0.249 Sum_probs=47.7
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEe
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~ 88 (281)
||+|.|.|+||.+|+.+++.|.+.|++|++.+|++++.+.+... ++ +.. +..++++++|+||-+
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~--------g~-----~~~---~~~~~~~~aDvVi~a 74 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGM--------GI-----PLT---DGDGWIDEADVVVLA 74 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHT--------TC-----CCC---CSSGGGGTCSEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhc--------CC-----CcC---CHHHHhcCCCEEEEc
Confidence 56899999999999999999999999999999876544332221 11 112 234466789999977
Q ss_pred c
Q 023515 89 A 89 (281)
Q Consensus 89 a 89 (281)
.
T Consensus 75 v 75 (286)
T 3c24_A 75 L 75 (286)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=3.3e-05 Score=63.47 Aligned_cols=69 Identities=14% Similarity=0.091 Sum_probs=51.6
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
+++++++|+|+ |.+|++++..|.+.|. +|++++|+.++.+.+.. .+... ..+++.++++++|+|
T Consensus 115 l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~---------~~~~~-----~~~~~~~~~~~aDiV 179 (277)
T 3don_A 115 IEDAYILILGA-GGASKGIANELYKIVRPTLTVANRTMSRFNNWSL---------NINKI-----NLSHAESHLDEFDII 179 (277)
T ss_dssp GGGCCEEEECC-SHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCS---------CCEEE-----CHHHHHHTGGGCSEE
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH---------hcccc-----cHhhHHHHhcCCCEE
Confidence 45789999996 8999999999999998 89999998766554321 11111 234466667789999
Q ss_pred EEecc
Q 023515 86 CHTAS 90 (281)
Q Consensus 86 ih~a~ 90 (281)
|++..
T Consensus 180 InaTp 184 (277)
T 3don_A 180 INTTP 184 (277)
T ss_dssp EECCC
T ss_pred EECcc
Confidence 99864
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=97.58 E-value=6.1e-05 Score=62.82 Aligned_cols=73 Identities=22% Similarity=0.176 Sum_probs=52.0
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 87 (281)
.+.+|+|+||+|.+|..+++.+...|.+|+++++++++.+.+.++ +... ..|..+.+++.+.++++|+||+
T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~--------ga~~-~~~~~~~~~~~~~~~~~d~vid 195 (302)
T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLAL--------GAEE-AATYAEVPERAKAWGGLDLVLE 195 (302)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHT--------TCSE-EEEGGGHHHHHHHTTSEEEEEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhc--------CCCE-EEECCcchhHHHHhcCceEEEE
Confidence 478999999999999999999999999999999987665544332 1111 1244331234444478999999
Q ss_pred ecc
Q 023515 88 TAS 90 (281)
Q Consensus 88 ~a~ 90 (281)
+|
T Consensus 196 -~g 197 (302)
T 1iz0_A 196 -VR 197 (302)
T ss_dssp -CS
T ss_pred -CC
Confidence 86
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=6.7e-05 Score=63.49 Aligned_cols=74 Identities=20% Similarity=0.254 Sum_probs=51.5
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHH---h--cCC
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI---V--DGC 82 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~---~--~~~ 82 (281)
.+.+|||+||+|.||..+++.+...|.+|+++++++++.+....+ + ... ..|..+.+..+.+ . +++
T Consensus 148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----g--a~~---~~~~~~~~~~~~~~~~~~~~g~ 218 (334)
T 3qwb_A 148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEY----G--AEY---LINASKEDILRQVLKFTNGKGV 218 (334)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----T--CSE---EEETTTSCHHHHHHHHTTTSCE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----C--CcE---EEeCCCchHHHHHHHHhCCCCc
Confidence 478999999999999999999999999999999876554433222 1 111 1244443333332 2 268
Q ss_pred cEeEEecc
Q 023515 83 DGVCHTAS 90 (281)
Q Consensus 83 d~Vih~a~ 90 (281)
|+||+++|
T Consensus 219 D~vid~~g 226 (334)
T 3qwb_A 219 DASFDSVG 226 (334)
T ss_dssp EEEEECCG
T ss_pred eEEEECCC
Confidence 99999987
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00026 Score=58.46 Aligned_cols=107 Identities=14% Similarity=0.165 Sum_probs=66.8
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCc------------------chhhhhhhccCCCCcEEEEEc
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDP------------------KKTRHLLALDGASERLQLFKA 67 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~------------------~~~~~~~~~~~~~~~~~~~~~ 67 (281)
++.++|+|.|+ |.+|+++++.|+..| -+++++|++.-+. +...+.........+++.+..
T Consensus 34 L~~~~VlVvGa-GGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~~~ 112 (292)
T 3h8v_A 34 IRTFAVAIVGV-GGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNY 112 (292)
T ss_dssp GGGCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEECC
T ss_pred HhCCeEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEecc
Confidence 45789999995 899999999999999 4888888765222 111111111111245677777
Q ss_pred CCCCcCcHHHHh-----------cCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 68 NLLEEGSFDSIV-----------DGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 68 D~~~~~~~~~~~-----------~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
++++.+.++.++ ++.|+||.+. + |...-..+-++|.+. +. .+|+.+.
T Consensus 113 ~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~--------D--------n~~~R~~in~~c~~~-~~-Pli~~gv 170 (292)
T 3h8v_A 113 NITTVENFQHFMDRISNGGLEEGKPVDLVLSCV--------D--------NFEARMTINTACNEL-GQ-TWMESGV 170 (292)
T ss_dssp CTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECC--------S--------SHHHHHHHHHHHHHH-TC-CEEEEEE
T ss_pred cCCcHHHHHHHhhhhcccccccCCCCCEEEECC--------c--------chhhhhHHHHHHHHh-CC-CEEEeee
Confidence 776645555554 5789999764 2 223334566777776 54 4666544
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=6e-05 Score=64.19 Aligned_cols=74 Identities=19% Similarity=0.234 Sum_probs=52.4
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHC-CCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCc---HHHHh--cC
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSR-GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGS---FDSIV--DG 81 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~---~~~~~--~~ 81 (281)
.+++|+|+|++|.||..+++.+... |.+|+++++++++.+.+.++ + ... ..|..+.+. +.++. .+
T Consensus 170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~----g--~~~---~~~~~~~~~~~~~~~~~~~~~ 240 (347)
T 1jvb_A 170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----G--ADY---VINASMQDPLAEIRRITESKG 240 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----T--CSE---EEETTTSCHHHHHHHHTTTSC
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----C--CCE---EecCCCccHHHHHHHHhcCCC
Confidence 4789999999999999999999998 99999999876554443222 1 111 135555433 34444 36
Q ss_pred CcEeEEecc
Q 023515 82 CDGVCHTAS 90 (281)
Q Consensus 82 ~d~Vih~a~ 90 (281)
+|+||+++|
T Consensus 241 ~d~vi~~~g 249 (347)
T 1jvb_A 241 VDAVIDLNN 249 (347)
T ss_dssp EEEEEESCC
T ss_pred ceEEEECCC
Confidence 899999987
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=7.2e-05 Score=61.43 Aligned_cols=73 Identities=21% Similarity=0.175 Sum_probs=51.3
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHh-cCCcEe
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV-DGCDGV 85 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-~~~d~V 85 (281)
+++++++|+|+ |.+|++++..|++.|++|++.+|+.++.+.+.+..... ..+.. .|+ +++. .++|+|
T Consensus 117 ~~~~~vlvlGa-Gg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~---~~~~~--~~~------~~~~~~~~Div 184 (272)
T 1p77_A 117 RPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPY---GNIQA--VSM------DSIPLQTYDLV 184 (272)
T ss_dssp CTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGG---SCEEE--EEG------GGCCCSCCSEE
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcccc---CCeEE--eeH------HHhccCCCCEE
Confidence 45789999997 78999999999999999999999876665554332111 12222 222 1121 379999
Q ss_pred EEeccc
Q 023515 86 CHTASP 91 (281)
Q Consensus 86 ih~a~~ 91 (281)
|++++.
T Consensus 185 In~t~~ 190 (272)
T 1p77_A 185 INATSA 190 (272)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 999864
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=97.55 E-value=3.1e-05 Score=65.67 Aligned_cols=70 Identities=10% Similarity=0.051 Sum_probs=57.3
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHH-hcCCcEeEE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI-VDGCDGVCH 87 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~Vih 87 (281)
.++++|.|+ |.+|+.++++|.++|+ |++++++++..+ +.+ .++.++.||.+|++.++++ ++++|.||-
T Consensus 115 ~~~viI~G~-G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~--------~~~~~i~gd~~~~~~L~~a~i~~a~~vi~ 183 (336)
T 1lnq_A 115 SRHVVICGW-SESTLECLRELRGSEV-FVLAEDENVRKK-VLR--------SGANFVHGDPTRVSDLEKANVRGARAVIV 183 (336)
T ss_dssp -CEEEEESC-CHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHH--------TTCEEEESCTTSHHHHHHTCSTTEEEEEE
T ss_pred cCCEEEECC-cHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHh--------CCcEEEEeCCCCHHHHHhcChhhccEEEE
Confidence 357999996 9999999999999999 999988775443 222 3688999999999998887 788999986
Q ss_pred ec
Q 023515 88 TA 89 (281)
Q Consensus 88 ~a 89 (281)
+.
T Consensus 184 ~~ 185 (336)
T 1lnq_A 184 DL 185 (336)
T ss_dssp CC
T ss_pred cC
Confidence 54
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0001 Score=63.26 Aligned_cols=69 Identities=17% Similarity=0.252 Sum_probs=49.1
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCC---CCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHh---cCC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDP---NDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV---DGC 82 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~---~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~---~~~ 82 (281)
+++|+|+|+ |.||..+++.+...|.+|+++++++ ++.+.+..+ ++..+ | .+ +..+.+. .++
T Consensus 181 g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~--------ga~~v--~-~~-~~~~~~~~~~~~~ 247 (366)
T 2cdc_A 181 CRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEET--------KTNYY--N-SS-NGYDKLKDSVGKF 247 (366)
T ss_dssp TCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHH--------TCEEE--E-CT-TCSHHHHHHHCCE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHh--------CCcee--c-hH-HHHHHHHHhCCCC
Confidence 889999999 9999999999998999999999987 433322221 23333 5 44 2222221 469
Q ss_pred cEeEEecc
Q 023515 83 DGVCHTAS 90 (281)
Q Consensus 83 d~Vih~a~ 90 (281)
|+||++++
T Consensus 248 d~vid~~g 255 (366)
T 2cdc_A 248 DVIIDATG 255 (366)
T ss_dssp EEEEECCC
T ss_pred CEEEECCC
Confidence 99999986
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00026 Score=59.54 Aligned_cols=113 Identities=15% Similarity=0.167 Sum_probs=71.2
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCC--EEEEEEcCCCCcchhhhhhhc-cCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLAL-DGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
|+|.|.|+ |.+|..++..|+..|+ +|+++++++++.+.+...... ........+.. ++. +.++++|+||
T Consensus 1 mkI~VIGa-G~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~---~d~----~~~~~aDvVi 72 (319)
T 1a5z_A 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYA---GDY----ADLKGSDVVI 72 (319)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEE---CCG----GGGTTCSEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEe---CCH----HHhCCCCEEE
Confidence 47999998 9999999999999998 999999986544332211110 00001112211 222 3467899999
Q ss_pred EecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEec
Q 023515 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131 (281)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S 131 (281)
-+++......... .+....|+.....+++.+.+..+...+|.+|
T Consensus 73 iav~~~~~~g~~r-~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~t 116 (319)
T 1a5z_A 73 VAAGVPQKPGETR-LQLLGRNARVMKEIARNVSKYAPDSIVIVVT 116 (319)
T ss_dssp ECCCCCCCSSCCH-HHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred EccCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 9886543222222 2667778888889998888763333555554
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00013 Score=62.03 Aligned_cols=72 Identities=22% Similarity=0.254 Sum_probs=51.2
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHH----Hhc--C
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDS----IVD--G 81 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~----~~~--~ 81 (281)
.+.+|||+||+|.||..+++.+...|.+|+++++++++.+.+.++. .. ..+ |.. +++.+ +.. +
T Consensus 159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g------a~-~v~--~~~--~~~~~~v~~~~~~~g 227 (342)
T 4eye_A 159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVG------AD-IVL--PLE--EGWAKAVREATGGAG 227 (342)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHT------CS-EEE--ESS--TTHHHHHHHHTTTSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcC------Cc-EEe--cCc--hhHHHHHHHHhCCCC
Confidence 4789999999999999999999999999999999876655444321 11 112 332 22322 222 5
Q ss_pred CcEeEEecc
Q 023515 82 CDGVCHTAS 90 (281)
Q Consensus 82 ~d~Vih~a~ 90 (281)
+|+||+++|
T Consensus 228 ~Dvvid~~g 236 (342)
T 4eye_A 228 VDMVVDPIG 236 (342)
T ss_dssp EEEEEESCC
T ss_pred ceEEEECCc
Confidence 899999987
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=5e-05 Score=62.76 Aligned_cols=81 Identities=17% Similarity=0.145 Sum_probs=51.2
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhc-------c--C-CCCcEEEEEcCCCCcCcHHH
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLAL-------D--G-ASERLQLFKANLLEEGSFDS 77 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-------~--~-~~~~~~~~~~D~~~~~~~~~ 77 (281)
++++|.|.|+ |.+|+.++..|++.|++|++.+|+++..+........ . . ......-....+.-..++.+
T Consensus 3 ~~~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~ 81 (283)
T 4e12_A 3 GITNVTVLGT-GVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQ 81 (283)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHH
Confidence 3678999985 9999999999999999999999987654443322100 0 0 00000000001111245667
Q ss_pred HhcCCcEeEEec
Q 023515 78 IVDGCDGVCHTA 89 (281)
Q Consensus 78 ~~~~~d~Vih~a 89 (281)
+++++|+||.+.
T Consensus 82 ~~~~aDlVi~av 93 (283)
T 4e12_A 82 AVKDADLVIEAV 93 (283)
T ss_dssp HTTTCSEEEECC
T ss_pred HhccCCEEEEec
Confidence 788999999876
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=6.9e-05 Score=63.19 Aligned_cols=74 Identities=16% Similarity=0.253 Sum_probs=52.0
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHh---c--CC
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV---D--GC 82 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~---~--~~ 82 (281)
.+.+|+|+||+|.||..+++.+...|.+|+++++++++.+.+.++. ... ..|..+.+..+.+. . ++
T Consensus 140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~G------a~~---~~~~~~~~~~~~~~~~~~~~g~ 210 (325)
T 3jyn_A 140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALG------AWE---TIDYSHEDVAKRVLELTDGKKC 210 (325)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHT------CSE---EEETTTSCHHHHHHHHTTTCCE
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC------CCE---EEeCCCccHHHHHHHHhCCCCc
Confidence 4789999999999999999999999999999998766554433321 111 12444433333332 2 68
Q ss_pred cEeEEecc
Q 023515 83 DGVCHTAS 90 (281)
Q Consensus 83 d~Vih~a~ 90 (281)
|+||+++|
T Consensus 211 Dvvid~~g 218 (325)
T 3jyn_A 211 PVVYDGVG 218 (325)
T ss_dssp EEEEESSC
T ss_pred eEEEECCC
Confidence 99999987
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=97.49 E-value=6.9e-05 Score=62.67 Aligned_cols=40 Identities=23% Similarity=0.242 Sum_probs=33.6
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchh
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKT 49 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~ 49 (281)
||+|.|.|+ |.+|..++..|.+.|++|++++|++++.+.+
T Consensus 3 ~m~i~iiG~-G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~ 42 (316)
T 2ew2_A 3 AMKIAIAGA-GAMGSRLGIMLHQGGNDVTLIDQWPAHIEAI 42 (316)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred CCeEEEECc-CHHHHHHHHHHHhCCCcEEEEECCHHHHHHH
Confidence 468999995 9999999999999999999999986554443
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00021 Score=60.92 Aligned_cols=41 Identities=27% Similarity=0.315 Sum_probs=29.7
Q ss_pred CcchhccCCCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcC
Q 023515 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRD 42 (281)
Q Consensus 1 ~~~~~~~~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~ 42 (281)
|++..+ ++++|.|.||||++|+.+++.|.+++ .+|+.+.++
T Consensus 1 m~~~~~-M~~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s 42 (354)
T 1ys4_A 1 MSKGEK-MKIKVGVLGATGSVGQRFVQLLADHPMFELTALAAS 42 (354)
T ss_dssp -------CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEEC
T ss_pred CCCccc-ccceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcc
Confidence 444332 24689999999999999999998875 688888764
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00028 Score=60.80 Aligned_cols=70 Identities=16% Similarity=0.297 Sum_probs=54.3
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+.+++|+|.|+ |.+|+.+++.+.+.|++|++++..+..... .. --.++..|..|.+.+.++++++|+|.
T Consensus 10 ~~~~~IlIlG~-G~lg~~la~aa~~lG~~viv~d~~~~~p~~--~~--------ad~~~~~~~~d~~~l~~~~~~~dvi~ 78 (377)
T 3orq_A 10 KFGATIGIIGG-GQLGKMMAQSAQKMGYKVVVLDPSEDCPCR--YV--------AHEFIQAKYDDEKALNQLGQKCDVIT 78 (377)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCTTCTTG--GG--------SSEEEECCTTCHHHHHHHHHHCSEEE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCCChhh--hh--------CCEEEECCCCCHHHHHHHHHhCCcce
Confidence 45789999995 889999999999999999999876542211 00 12466789999999999988899874
Q ss_pred E
Q 023515 87 H 87 (281)
Q Consensus 87 h 87 (281)
-
T Consensus 79 ~ 79 (377)
T 3orq_A 79 Y 79 (377)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00037 Score=58.47 Aligned_cols=104 Identities=17% Similarity=0.106 Sum_probs=65.7
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCC--EEEEEEcCCCCcc--hhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPK--KTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~ 84 (281)
+|+|.|.|+ |.+|..++..|+..|+ +|++++|+++..+ .+.-....... ........ ++ . +.++++|+
T Consensus 7 ~mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~--~~---~-~~~~~aD~ 78 (319)
T 1lld_A 7 PTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFY-PTVSIDGS--DD---P-EICRDADM 78 (319)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGS-TTCEEEEE--SC---G-GGGTTCSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhc-CCeEEEeC--CC---H-HHhCCCCE
Confidence 568999997 9999999999999998 9999999764332 11100001000 11221111 12 1 34678999
Q ss_pred eEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhC
Q 023515 85 VCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKF 121 (281)
Q Consensus 85 Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~ 121 (281)
||-+++....... ...+.+..|+.....+++.+.+.
T Consensus 79 Vii~v~~~~~~g~-~r~~~~~~n~~~~~~~~~~i~~~ 114 (319)
T 1lld_A 79 VVITAGPRQKPGQ-SRLELVGATVNILKAIMPNLVKV 114 (319)
T ss_dssp EEECCCCCCCTTC-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHh
Confidence 9998864332222 22366777888888888888775
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00085 Score=56.00 Aligned_cols=112 Identities=22% Similarity=0.272 Sum_probs=73.5
Q ss_pred eEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhhhhc----cCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 11 VVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLAL----DGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
||.|+|| |.+|..++..|+..|. +|+++++++++.+........ .....+++.. . +. +.++++|+|
T Consensus 1 KI~IiGa-G~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t-~------d~-~a~~~aD~V 71 (308)
T 2d4a_B 1 MITILGA-GKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGS-N------SY-EDMRGSDIV 71 (308)
T ss_dssp CEEEECC-SHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEE-S------CG-GGGTTCSEE
T ss_pred CEEEECc-CHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEEC-C------CH-HHhCCCCEE
Confidence 5899998 9999999999988886 799999986544332111111 0101122211 1 22 367899999
Q ss_pred EEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
|-.++........ ..+....|+.-...+++.+.++.+...+|.+|-
T Consensus 72 i~~ag~~~k~G~~-r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 117 (308)
T 2d4a_B 72 LVTAGIGRKPGMT-REQLLEANANTMADLAEKIKAYAKDAIVVITTN 117 (308)
T ss_dssp EECCSCCCCSSCC-THHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred EEeCCCCCCCCCc-HHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 9998864433322 236778899999999999988634445666644
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00019 Score=61.24 Aligned_cols=80 Identities=20% Similarity=0.102 Sum_probs=50.1
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCC-CCcCcHHHHhcCCcEeEE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL-LEEGSFDSIVDGCDGVCH 87 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~-~~~~~~~~~~~~~d~Vih 87 (281)
+|+|.|.|+ |.+|..++..|.+.|++|++++|+++..+.+.+............. ...+ ....++.++++++|+||-
T Consensus 4 ~mki~iiG~-G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~vi~ 81 (359)
T 1bg6_A 4 SKTYAVLGL-GNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAG-TAHPDLLTSDIGLAVKDADVILI 81 (359)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCE-EECCSEEESCHHHHHTTCSEEEE
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEecccccc-ccccceecCCHHHHHhcCCEEEE
Confidence 578999995 9999999999999999999999876554443222100000000000 0111 112356667788999998
Q ss_pred ecc
Q 023515 88 TAS 90 (281)
Q Consensus 88 ~a~ 90 (281)
+..
T Consensus 82 ~v~ 84 (359)
T 1bg6_A 82 VVP 84 (359)
T ss_dssp CSC
T ss_pred eCC
Confidence 763
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=9.2e-05 Score=63.43 Aligned_cols=97 Identities=19% Similarity=0.199 Sum_probs=63.4
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHh-----cCC
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV-----DGC 82 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-----~~~ 82 (281)
.+.+|||+||+|.||..+++.+...|.+|+++++++++.+.+.++ + ... . .|..+. ++.+.+ +++
T Consensus 163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~----G--a~~-~--~~~~~~-~~~~~~~~~~~~g~ 232 (362)
T 2c0c_A 163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSL----G--CDR-P--INYKTE-PVGTVLKQEYPEGV 232 (362)
T ss_dssp TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----T--CSE-E--EETTTS-CHHHHHHHHCTTCE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHc----C--CcE-E--EecCCh-hHHHHHHHhcCCCC
Confidence 478999999999999999999999999999999876544443322 1 111 1 244332 233322 268
Q ss_pred cEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccce
Q 023515 83 DGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMA 134 (281)
Q Consensus 83 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~ 134 (281)
|+||++++. . .....++.+++. .++|.+++..
T Consensus 233 D~vid~~g~----------~-------~~~~~~~~l~~~---G~iv~~g~~~ 264 (362)
T 2c0c_A 233 DVVYESVGG----------A-------MFDLAVDALATK---GRLIVIGFIS 264 (362)
T ss_dssp EEEEECSCT----------H-------HHHHHHHHEEEE---EEEEECCCGG
T ss_pred CEEEECCCH----------H-------HHHHHHHHHhcC---CEEEEEeCCC
Confidence 999999862 1 123345555553 5888888753
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.45 E-value=7.9e-05 Score=62.31 Aligned_cols=67 Identities=16% Similarity=0.152 Sum_probs=49.9
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
.++++|.|.| .|.+|..+++.|++.|++|++.+|++++.+.+... ++. ...++.++++++|+||
T Consensus 7 ~~~~~IgiIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~--------g~~-------~~~~~~e~~~~aDvVi 70 (306)
T 3l6d_A 7 SFEFDVSVIG-LGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAA--------GAH-------LCESVKAALSASPATI 70 (306)
T ss_dssp CCSCSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH--------TCE-------ECSSHHHHHHHSSEEE
T ss_pred cCCCeEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHC--------CCe-------ecCCHHHHHhcCCEEE
Confidence 4467899998 69999999999999999999999987655443321 111 1245667777889888
Q ss_pred Eec
Q 023515 87 HTA 89 (281)
Q Consensus 87 h~a 89 (281)
-+.
T Consensus 71 ~~v 73 (306)
T 3l6d_A 71 FVL 73 (306)
T ss_dssp ECC
T ss_pred EEe
Confidence 765
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00028 Score=56.70 Aligned_cols=34 Identities=15% Similarity=0.272 Sum_probs=28.4
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEE-EEcCC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKA-SVRDP 43 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-~~r~~ 43 (281)
|+||.|+|+ |.+|+.+++.+.++++++++ ++|..
T Consensus 3 MmkI~ViGa-GrMG~~i~~~l~~~~~eLva~~d~~~ 37 (243)
T 3qy9_A 3 SMKILLIGY-GAMNQRVARLAEEKGHEIVGVIENTP 37 (243)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEECSSC
T ss_pred ceEEEEECc-CHHHHHHHHHHHhCCCEEEEEEecCc
Confidence 679999999 99999999999998777666 45543
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00094 Score=54.88 Aligned_cols=75 Identities=17% Similarity=0.162 Sum_probs=45.0
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHC-CCEEEEE-EcCCCCc--chhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcC
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSR-GYTVKAS-VRDPNDP--KKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG 81 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~-g~~V~~~-~r~~~~~--~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 81 (281)
|.++.+|.|.|++|.+|+.+++.+.+. +.++++. +|+.+.. .....+ . ++. ..++.-.+++++++++
T Consensus 18 m~~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel---~----G~~--~~gv~v~~dl~~ll~~ 88 (288)
T 3ijp_A 18 GPGSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASIL---I----GSD--FLGVRITDDPESAFSN 88 (288)
T ss_dssp ---CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGG---T----TCS--CCSCBCBSCHHHHTTS
T ss_pred ccCCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHh---h----ccC--cCCceeeCCHHHHhcC
Confidence 345678999999999999999999866 5787766 5543221 111111 0 000 1223333567777778
Q ss_pred CcEeEEec
Q 023515 82 CDGVCHTA 89 (281)
Q Consensus 82 ~d~Vih~a 89 (281)
+|+||...
T Consensus 89 aDVvIDFT 96 (288)
T 3ijp_A 89 TEGILDFS 96 (288)
T ss_dssp CSEEEECS
T ss_pred CCEEEEcC
Confidence 88888764
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0015 Score=54.39 Aligned_cols=112 Identities=10% Similarity=0.115 Sum_probs=71.4
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCC--EEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
.++||.|+|| |.+|..++..|+.+|. +|++++++++.......+.... ..+++.. . ++ +.++++|+|
T Consensus 13 ~~~kV~ViGa-G~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~--~~~i~~t-~------d~-~~l~~aD~V 81 (303)
T 2i6t_A 13 TVNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFN--LPNVEIS-K------DL-SASAHSKVV 81 (303)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHT--CTTEEEE-S------CG-GGGTTCSEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhc--CCCeEEe-C------CH-HHHCCCCEE
Confidence 3578999996 9999999999999997 9999999774211111221111 1234331 2 23 457899999
Q ss_pred EEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
|-.++.. ... ....+....|+.-.+.+++.+.++.....++.+|-
T Consensus 82 i~aag~~-~pG-~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sN 126 (303)
T 2i6t_A 82 IFTVNSL-GSS-QSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQ 126 (303)
T ss_dssp EECCCC------CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSS
T ss_pred EEcCCCC-CCC-CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 9999873 222 22336778899999999999988643344555554
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00021 Score=59.79 Aligned_cols=67 Identities=15% Similarity=0.089 Sum_probs=50.8
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
..||+|.|.| +|.+|..+++.|++.|++|++.+|++++.+.+... ++. -..++.++++++|+||
T Consensus 19 ~~m~~I~iIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~--------g~~-------~~~~~~~~~~~aDvvi 82 (310)
T 3doj_A 19 SHMMEVGFLG-LGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEH--------GAS-------VCESPAEVIKKCKYTI 82 (310)
T ss_dssp CCSCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHT--------TCE-------ECSSHHHHHHHCSEEE
T ss_pred ccCCEEEEEC-ccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHC--------CCe-------EcCCHHHHHHhCCEEE
Confidence 4578999998 69999999999999999999999988765554321 121 1245667777888888
Q ss_pred Eec
Q 023515 87 HTA 89 (281)
Q Consensus 87 h~a 89 (281)
-+.
T Consensus 83 ~~v 85 (310)
T 3doj_A 83 AML 85 (310)
T ss_dssp ECC
T ss_pred EEc
Confidence 765
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0004 Score=56.23 Aligned_cols=106 Identities=15% Similarity=0.166 Sum_probs=65.7
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhh-------------------hhhccCCCCcEEEEE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRH-------------------LLALDGASERLQLFK 66 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~-------------------~~~~~~~~~~~~~~~ 66 (281)
++.++|+|.|+ |.+|+++++.|+..|. ++++++++.-....+.+ .........+++.+.
T Consensus 26 l~~~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~ 104 (251)
T 1zud_1 26 LLDSQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQ 104 (251)
T ss_dssp HHTCEEEEECC-STTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred HhcCcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEe
Confidence 45789999997 7799999999999995 78888776432222111 111001113455555
Q ss_pred cCCCCcCcHHHHhcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 67 ANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 67 ~D~~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
.++++ +.+.+++++.|+||.+. +. ...-..+.++|.+. +. .+|+.+.
T Consensus 105 ~~~~~-~~~~~~~~~~DvVi~~~--------d~--------~~~r~~l~~~~~~~-~~-p~i~~~~ 151 (251)
T 1zud_1 105 QRLTG-EALKDAVARADVVLDCT--------DN--------MATRQEINAACVAL-NT-PLITASA 151 (251)
T ss_dssp SCCCH-HHHHHHHHHCSEEEECC--------SS--------HHHHHHHHHHHHHT-TC-CEEEEEE
T ss_pred ccCCH-HHHHHHHhcCCEEEECC--------CC--------HHHHHHHHHHHHHh-CC-CEEEEec
Confidence 55543 45677788999999864 11 12234566677775 54 4676654
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00024 Score=58.19 Aligned_cols=72 Identities=21% Similarity=0.211 Sum_probs=50.9
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
+++++++|+|+ |.+|++++..|.+.|. +|++++|+.++.+.+.+.... ..+..+ ++ +++.. ++.|+|
T Consensus 118 l~~k~~lvlGa-Gg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~----~~~~~~--~~---~~l~~--~~~Div 185 (272)
T 3pwz_A 118 LRNRRVLLLGA-GGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDH----SRLRIS--RY---EALEG--QSFDIV 185 (272)
T ss_dssp CTTSEEEEECC-SHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCC----TTEEEE--CS---GGGTT--CCCSEE
T ss_pred ccCCEEEEECc-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcc----CCeeEe--eH---HHhcc--cCCCEE
Confidence 46889999997 8999999999999995 999999988766655443211 123332 22 22222 578999
Q ss_pred EEecc
Q 023515 86 CHTAS 90 (281)
Q Consensus 86 ih~a~ 90 (281)
||+..
T Consensus 186 InaTp 190 (272)
T 3pwz_A 186 VNATS 190 (272)
T ss_dssp EECSS
T ss_pred EECCC
Confidence 99864
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00043 Score=61.20 Aligned_cols=100 Identities=18% Similarity=0.257 Sum_probs=74.3
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHH-hcCCcEeEE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI-VDGCDGVCH 87 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~Vih 87 (281)
-++|+|.|| |.||.++++.| +++++|.++.+++++.+.+.... .+..++.||.+|++-+.+. ++++|++|-
T Consensus 235 ~~~v~I~Gg-G~ig~~lA~~L-~~~~~v~iIE~d~~r~~~la~~l------~~~~Vi~GD~td~~~L~ee~i~~~D~~ia 306 (461)
T 4g65_A 235 YRRIMIVGG-GNIGASLAKRL-EQTYSVKLIERNLQRAEKLSEEL------ENTIVFCGDAADQELLTEENIDQVDVFIA 306 (461)
T ss_dssp CCEEEEECC-SHHHHHHHHHH-TTTSEEEEEESCHHHHHHHHHHC------TTSEEEESCTTCHHHHHHTTGGGCSEEEE
T ss_pred ccEEEEEcc-hHHHHHHHHHh-hhcCceEEEecCHHHHHHHHHHC------CCceEEeccccchhhHhhcCchhhcEEEE
Confidence 578999995 99999999998 55799999999887777665542 4678999999998877765 568999986
Q ss_pred ecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccc
Q 023515 88 TASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (281)
Q Consensus 88 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (281)
+.+ ++ +.|+... ..|++. +++++|-.-.-
T Consensus 307 ~T~-------~D-----e~Ni~~~----llAk~~-gv~kvIa~vn~ 335 (461)
T 4g65_A 307 LTN-------ED-----ETNIMSA----MLAKRM-GAKKVMVLIQR 335 (461)
T ss_dssp CCS-------CH-----HHHHHHH----HHHHHT-TCSEEEEECSC
T ss_pred ccc-------Cc-----HHHHHHH----HHHHHc-CCccccccccc
Confidence 531 22 4566653 345666 77777765543
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00015 Score=62.39 Aligned_cols=76 Identities=16% Similarity=0.086 Sum_probs=55.2
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+.+++|+|+|+ |.||+.+++.+...|.+|++++|++.+.+.+.... + ..+. .+..+.+++.++++++|+||
T Consensus 166 l~g~~V~ViG~-G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~---g--~~~~---~~~~~~~~l~~~l~~aDvVi 236 (377)
T 2vhw_A 166 VEPADVVVIGA-GTAGYNAARIANGMGATVTVLDINIDKLRQLDAEF---C--GRIH---TRYSSAYELEGAVKRADLVI 236 (377)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT---T--TSSE---EEECCHHHHHHHHHHCSEEE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhc---C--CeeE---eccCCHHHHHHHHcCCCEEE
Confidence 56899999998 99999999999999999999999875443332211 1 1111 12234456777888999999
Q ss_pred Eeccc
Q 023515 87 HTASP 91 (281)
Q Consensus 87 h~a~~ 91 (281)
.+++.
T Consensus 237 ~~~~~ 241 (377)
T 2vhw_A 237 GAVLV 241 (377)
T ss_dssp ECCCC
T ss_pred ECCCc
Confidence 98764
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0002 Score=58.95 Aligned_cols=72 Identities=18% Similarity=0.218 Sum_probs=50.9
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
+++++++|+|+ |.+|++++..|.+.|. +|++.+|+.++.+.+.+..... ..+... ++. ++.+++|+|
T Consensus 124 l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~---~~~~~~--~~~------~l~~~aDiI 191 (281)
T 3o8q_A 124 LKGATILLIGA-GGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAY---GEVKAQ--AFE------QLKQSYDVI 191 (281)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGG---SCEEEE--EGG------GCCSCEEEE
T ss_pred ccCCEEEEECc-hHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhcc---CCeeEe--eHH------HhcCCCCEE
Confidence 46899999997 7899999999999995 9999999887665554433211 123332 221 222678999
Q ss_pred EEecc
Q 023515 86 CHTAS 90 (281)
Q Consensus 86 ih~a~ 90 (281)
|++..
T Consensus 192 InaTp 196 (281)
T 3o8q_A 192 INSTS 196 (281)
T ss_dssp EECSC
T ss_pred EEcCc
Confidence 99864
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00016 Score=60.89 Aligned_cols=67 Identities=15% Similarity=0.179 Sum_probs=50.3
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
.++|+|.|.| +|.+|..+++.|++.|++|++.+|++++.+.+... ++. -..++.++++++|+||
T Consensus 29 ~~~~~I~iIG-~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~--------g~~-------~~~~~~e~~~~aDvVi 92 (320)
T 4dll_A 29 PYARKITFLG-TGSMGLPMARRLCEAGYALQVWNRTPARAASLAAL--------GAT-------IHEQARAAARDADIVV 92 (320)
T ss_dssp CCCSEEEEEC-CTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTT--------TCE-------EESSHHHHHTTCSEEE
T ss_pred cCCCEEEEEC-ccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHC--------CCE-------eeCCHHHHHhcCCEEE
Confidence 3467999998 59999999999999999999999987654443221 121 1245677788899988
Q ss_pred Eec
Q 023515 87 HTA 89 (281)
Q Consensus 87 h~a 89 (281)
-+.
T Consensus 93 ~~v 95 (320)
T 4dll_A 93 SML 95 (320)
T ss_dssp ECC
T ss_pred EEC
Confidence 765
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00011 Score=62.82 Aligned_cols=80 Identities=11% Similarity=0.120 Sum_probs=51.9
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 87 (281)
++|+|.|.|+ |.+|.+++..|.+.|++|++.+|+++..+.+..........+++.+ ...+.-..++.++++++|+||-
T Consensus 28 ~~mkI~VIGa-G~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l-~~~i~~t~d~~ea~~~aDvVil 105 (356)
T 3k96_A 28 FKHPIAILGA-GSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPF-PETLKAYCDLKASLEGVTDILI 105 (356)
T ss_dssp CCSCEEEECC-SHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCC-CTTEEEESCHHHHHTTCCEEEE
T ss_pred cCCeEEEECc-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCcc-CCCeEEECCHHHHHhcCCEEEE
Confidence 3578999995 9999999999999999999999987655444332111100011111 1112222456777889999986
Q ss_pred ec
Q 023515 88 TA 89 (281)
Q Consensus 88 ~a 89 (281)
+.
T Consensus 106 aV 107 (356)
T 3k96_A 106 VV 107 (356)
T ss_dssp CC
T ss_pred CC
Confidence 54
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0002 Score=62.98 Aligned_cols=79 Identities=16% Similarity=0.112 Sum_probs=50.0
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEE-EE-----EcCCCCcCcHHHHhcCCc
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQ-LF-----KANLLEEGSFDSIVDGCD 83 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~-----~~D~~~~~~~~~~~~~~d 83 (281)
|+|.|.| +|++|..++..|++.|++|++++|++++.+.+.+.. ......+.. .+ .+.+....++.++++++|
T Consensus 1 mkI~VIG-~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~-~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aD 78 (436)
T 1mv8_A 1 MRISIFG-LGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGK-SPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSD 78 (436)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTC-CSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCS
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCC-CCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCC
Confidence 4799998 699999999999999999999999876554433210 000000000 00 011222334566778899
Q ss_pred EeEEecc
Q 023515 84 GVCHTAS 90 (281)
Q Consensus 84 ~Vih~a~ 90 (281)
+||-+..
T Consensus 79 vviiaVp 85 (436)
T 1mv8_A 79 VSFICVG 85 (436)
T ss_dssp EEEECCC
T ss_pred EEEEEcC
Confidence 9998874
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00021 Score=59.45 Aligned_cols=64 Identities=9% Similarity=-0.058 Sum_probs=49.8
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEe
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~ 88 (281)
+++|.|.| .|.+|..+++.|++.|++|++.+|++++.+.+... ++. -..++.++++ +|+||-+
T Consensus 15 ~~~I~vIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~--------g~~-------~~~~~~~~~~-aDvvi~~ 77 (296)
T 3qha_A 15 QLKLGYIG-LGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEA--------GAT-------LADSVADVAA-ADLIHIT 77 (296)
T ss_dssp CCCEEEEC-CSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHT--------TCE-------ECSSHHHHTT-SSEEEEC
T ss_pred CCeEEEEC-cCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHC--------CCE-------EcCCHHHHHh-CCEEEEE
Confidence 46899998 69999999999999999999999998876654332 222 1245677787 9999876
Q ss_pred c
Q 023515 89 A 89 (281)
Q Consensus 89 a 89 (281)
.
T Consensus 78 v 78 (296)
T 3qha_A 78 V 78 (296)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00069 Score=59.37 Aligned_cols=95 Identities=9% Similarity=0.153 Sum_probs=63.0
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCC-C---EEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCc---CcHHHHhcC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRG-Y---TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEE---GSFDSIVDG 81 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g-~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~---~~~~~~~~~ 81 (281)
.++|+|.| .|.||+.+++.|++++ + +|++.+.........+.. ++.+...++++. +.+.+++++
T Consensus 13 ~~rVlIIG-aGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~~~~~~~--------g~~~~~~~Vdadnv~~~l~aLl~~ 83 (480)
T 2ph5_A 13 KNRFVILG-FGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQY--------GVSFKLQQITPQNYLEVIGSTLEE 83 (480)
T ss_dssp CSCEEEEC-CSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSCCHHHHH--------TCEEEECCCCTTTHHHHTGGGCCT
T ss_pred CCCEEEEC-cCHHHHHHHHHHHhCCCCceeEEEEeccchhhhhHHhhc--------CCceeEEeccchhHHHHHHHHhcC
Confidence 45799999 7999999999999875 4 688887765443221111 345666666543 335567776
Q ss_pred CcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccc
Q 023515 82 CDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (281)
Q Consensus 82 ~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (281)
.|+|||++-+. ....++++|.+. ++ -|++++
T Consensus 84 ~DvVIN~s~~~-----------------~~l~Im~aclea-Gv---~YlDTa 114 (480)
T 2ph5_A 84 NDFLIDVSIGI-----------------SSLALIILCNQK-GA---LYINAA 114 (480)
T ss_dssp TCEEEECCSSS-----------------CHHHHHHHHHHH-TC---EEEESS
T ss_pred CCEEEECCccc-----------------cCHHHHHHHHHc-CC---CEEECC
Confidence 79999865221 125679999997 43 455554
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00025 Score=60.18 Aligned_cols=70 Identities=23% Similarity=0.295 Sum_probs=48.2
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHh------cC
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV------DG 81 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~------~~ 81 (281)
.+.+|||+||+|.||..+++.+...|.+|+++ +++++.+.+.++ ++.. .| .+ +++.+.+ ++
T Consensus 150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~l--------Ga~~--i~-~~-~~~~~~~~~~~~~~g 216 (343)
T 3gaz_A 150 DGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDL--------GATP--ID-AS-REPEDYAAEHTAGQG 216 (343)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHH--------TSEE--EE-TT-SCHHHHHHHHHTTSC
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHc--------CCCE--ec-cC-CCHHHHHHHHhcCCC
Confidence 47899999999999999999999999999998 655443332222 2223 23 33 2233322 26
Q ss_pred CcEeEEecc
Q 023515 82 CDGVCHTAS 90 (281)
Q Consensus 82 ~d~Vih~a~ 90 (281)
+|+||+++|
T Consensus 217 ~D~vid~~g 225 (343)
T 3gaz_A 217 FDLVYDTLG 225 (343)
T ss_dssp EEEEEESSC
T ss_pred ceEEEECCC
Confidence 899999986
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00045 Score=60.32 Aligned_cols=69 Identities=20% Similarity=0.334 Sum_probs=53.7
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+.+++|+|.|+ |.+|+.+++.+.+.|++|++++..+..... .. --.++..|..|.+.+.++++++|+|+
T Consensus 33 ~~~~~IlIlG~-G~lg~~~~~aa~~lG~~v~v~d~~~~~p~~--~~--------ad~~~~~~~~d~~~l~~~a~~~D~V~ 101 (419)
T 4e4t_A 33 LPGAWLGMVGG-GQLGRMFCFAAQSMGYRVAVLDPDPASPAG--AV--------ADRHLRAAYDDEAALAELAGLCEAVS 101 (419)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCTTCHHH--HH--------SSEEECCCTTCHHHHHHHHHHCSEEE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEECCCCcCchh--hh--------CCEEEECCcCCHHHHHHHHhcCCEEE
Confidence 45789999995 899999999999999999999765433211 10 11355688889999999888999987
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00028 Score=60.21 Aligned_cols=67 Identities=12% Similarity=0.043 Sum_probs=47.0
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCC---c
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGC---D 83 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~---d 83 (281)
+++|+|.|.| .|.+|..+++.|++.|++|++.+|++++.+.+... + +....++.++++.+ |
T Consensus 20 m~~mkIgiIG-lG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~--------g-------~~~~~s~~e~~~~a~~~D 83 (358)
T 4e21_A 20 FQSMQIGMIG-LGRMGADMVRRLRKGGHECVVYDLNVNAVQALERE--------G-------IAGARSIEEFCAKLVKPR 83 (358)
T ss_dssp --CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTT--------T-------CBCCSSHHHHHHHSCSSC
T ss_pred hcCCEEEEEC-chHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHC--------C-------CEEeCCHHHHHhcCCCCC
Confidence 4568999999 69999999999999999999999987654443221 1 12223455555555 8
Q ss_pred EeEEec
Q 023515 84 GVCHTA 89 (281)
Q Consensus 84 ~Vih~a 89 (281)
+||-+.
T Consensus 84 vVi~~v 89 (358)
T 4e21_A 84 VVWLMV 89 (358)
T ss_dssp EEEECS
T ss_pred EEEEeC
Confidence 887764
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00077 Score=59.45 Aligned_cols=81 Identities=19% Similarity=0.158 Sum_probs=53.8
Q ss_pred CcchhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCc-chhhhhhhccCCCCcEEEEEcCCCCcCcHHHHh
Q 023515 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP-KKTRHLLALDGASERLQLFKANLLEEGSFDSIV 79 (281)
Q Consensus 1 ~~~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 79 (281)
|.+++.+++++|+|.|. |..|.++++.|+++|++|++.+++.... .....+.. .++.+..+.-. + .++
T Consensus 1 m~~~~~~~~k~v~viG~-G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~-----~gi~~~~g~~~--~---~~~ 69 (451)
T 3lk7_A 1 MKTITTFENKKVLVLGL-ARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLE-----EGIKVVCGSHP--L---ELL 69 (451)
T ss_dssp ---CCTTTTCEEEEECC-TTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHH-----TTCEEEESCCC--G---GGG
T ss_pred CcchhhcCCCEEEEEee-CHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHh-----CCCEEEECCCh--H---Hhh
Confidence 55555577899999998 8899999999999999999999876322 12222211 24666555431 1 234
Q ss_pred cC-CcEeEEecccC
Q 023515 80 DG-CDGVCHTASPF 92 (281)
Q Consensus 80 ~~-~d~Vih~a~~~ 92 (281)
++ +|.||...|..
T Consensus 70 ~~~~d~vv~spgi~ 83 (451)
T 3lk7_A 70 DEDFCYMIKNPGIP 83 (451)
T ss_dssp GSCEEEEEECTTSC
T ss_pred cCCCCEEEECCcCC
Confidence 55 89999887753
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00092 Score=57.74 Aligned_cols=69 Identities=16% Similarity=0.179 Sum_probs=52.2
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+.+++|+|.|+ |.+|+.+++.+.+.|++|++++..+..... . .--..+..+..|.+.+.++++.+|+|.
T Consensus 12 ~~~k~IlIlG~-G~~g~~la~aa~~~G~~vi~~d~~~~~~~~--~--------~ad~~~~~~~~d~~~l~~~~~~~dvI~ 80 (389)
T 3q2o_A 12 LPGKTIGIIGG-GQLGRMMALAAKEMGYKIAVLDPTKNSPCA--Q--------VADIEIVASYDDLKAIQHLAEISDVVT 80 (389)
T ss_dssp CTTSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSTTCTTT--T--------TCSEEEECCTTCHHHHHHHHHTCSEEE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCCCCchH--H--------hCCceEecCcCCHHHHHHHHHhCCEee
Confidence 45789999995 789999999999999999999876532211 0 011345578888888888888889874
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00062 Score=58.49 Aligned_cols=73 Identities=16% Similarity=0.206 Sum_probs=48.6
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHh--cCCcEe
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV--DGCDGV 85 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~--~~~d~V 85 (281)
.+.+|+|+||+|.||..+++.+...|.+|+++++ +++.+.+.++ +... ..|..+.+..+.+. .++|+|
T Consensus 183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~-~~~~~~~~~l--------Ga~~-v~~~~~~~~~~~~~~~~g~D~v 252 (375)
T 2vn8_A 183 TGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCS-QDASELVRKL--------GADD-VIDYKSGSVEEQLKSLKPFDFI 252 (375)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC-GGGHHHHHHT--------TCSE-EEETTSSCHHHHHHTSCCBSEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeC-hHHHHHHHHc--------CCCE-EEECCchHHHHHHhhcCCCCEE
Confidence 4789999999999999999999999999998873 3333322221 1111 12444433333333 379999
Q ss_pred EEecc
Q 023515 86 CHTAS 90 (281)
Q Consensus 86 ih~a~ 90 (281)
|+++|
T Consensus 253 id~~g 257 (375)
T 2vn8_A 253 LDNVG 257 (375)
T ss_dssp EESSC
T ss_pred EECCC
Confidence 99986
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.001 Score=54.17 Aligned_cols=64 Identities=20% Similarity=0.076 Sum_probs=48.6
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEe
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~ 88 (281)
+++++|.|+ |..|++++..|.+.|.+|++++|+.++.+.+. .. ++... ++.+ + .+.|+|||+
T Consensus 118 ~k~vlvlGa-GGaaraia~~L~~~G~~v~V~nRt~~ka~~la-~~-------~~~~~--~~~~---l----~~~DiVIna 179 (269)
T 3phh_A 118 YQNALILGA-GGSAKALACELKKQGLQVSVLNRSSRGLDFFQ-RL-------GCDCF--MEPP---K----SAFDLIINA 179 (269)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH-HH-------TCEEE--SSCC---S----SCCSEEEEC
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HC-------CCeEe--cHHH---h----ccCCEEEEc
Confidence 689999996 99999999999999999999999998877655 21 12222 2222 2 178999998
Q ss_pred cc
Q 023515 89 AS 90 (281)
Q Consensus 89 a~ 90 (281)
..
T Consensus 180 Tp 181 (269)
T 3phh_A 180 TS 181 (269)
T ss_dssp CT
T ss_pred cc
Confidence 64
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00022 Score=59.79 Aligned_cols=70 Identities=16% Similarity=0.128 Sum_probs=46.3
Q ss_pred hhccCCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCC--CCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc
Q 023515 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDP--NDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (281)
Q Consensus 4 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 80 (281)
|+++.+|+|.|.| +|.+|..+++.|++.|+ +|++.+|++ .+.+.+... ++.. ..+..++++
T Consensus 19 ~~~~~~~~I~iIG-~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~--------g~~~-------~~~~~e~~~ 82 (312)
T 3qsg_A 19 YFQSNAMKLGFIG-FGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEEL--------GVSC-------KASVAEVAG 82 (312)
T ss_dssp ------CEEEEEC-CSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHT--------TCEE-------CSCHHHHHH
T ss_pred cccCCCCEEEEEC-ccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHC--------CCEE-------eCCHHHHHh
Confidence 4344578999999 59999999999999999 999999974 222222111 2221 235667777
Q ss_pred CCcEeEEec
Q 023515 81 GCDGVCHTA 89 (281)
Q Consensus 81 ~~d~Vih~a 89 (281)
++|+||-+.
T Consensus 83 ~aDvVi~~v 91 (312)
T 3qsg_A 83 ECDVIFSLV 91 (312)
T ss_dssp HCSEEEECS
T ss_pred cCCEEEEec
Confidence 899998775
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00046 Score=57.43 Aligned_cols=70 Identities=20% Similarity=0.248 Sum_probs=52.0
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+.+++|+|.|+ |.||+.+++.|...|.+|++.+|+.++...+... ++..+ +.++++++++++|+||
T Consensus 155 l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~--------g~~~~-----~~~~l~~~l~~aDvVi 220 (300)
T 2rir_A 155 IHGSQVAVLGL-GRTGMTIARTFAALGANVKVGARSSAHLARITEM--------GLVPF-----HTDELKEHVKDIDICI 220 (300)
T ss_dssp STTSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT--------TCEEE-----EGGGHHHHSTTCSEEE
T ss_pred CCCCEEEEEcc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC--------CCeEE-----chhhHHHHhhCCCEEE
Confidence 56899999995 9999999999999999999999976433221111 22222 2245788889999999
Q ss_pred Eecc
Q 023515 87 HTAS 90 (281)
Q Consensus 87 h~a~ 90 (281)
.+..
T Consensus 221 ~~~p 224 (300)
T 2rir_A 221 NTIP 224 (300)
T ss_dssp ECCS
T ss_pred ECCC
Confidence 8864
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00019 Score=63.61 Aligned_cols=80 Identities=16% Similarity=0.181 Sum_probs=49.4
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHC--CCEEEEEEcCCCCcchhhhhhhccCCCCcE-EEEE----cCCCCcCcHHHHhcC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSR--GYTVKASVRDPNDPKKTRHLLALDGASERL-QLFK----ANLLEEGSFDSIVDG 81 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~----~D~~~~~~~~~~~~~ 81 (281)
+|+|.|.| +|++|..++..|++. |++|++++|++++.+.+.+.. ........ ..+. ..+.-..++.+++++
T Consensus 5 ~mkI~VIG-~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~-~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~ 82 (467)
T 2q3e_A 5 IKKICCIG-AGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPT-LPIYEPGLKEVVESCRGKNLFFSTNIDDAIKE 82 (467)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSS-CSSCCTTHHHHHHHHBTTTEEEESCHHHHHHH
T ss_pred ccEEEEEC-CCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCC-CCcCCCCHHHHHHHhhcCCEEEECCHHHHHhc
Confidence 57899998 699999999999998 899999999876544432210 00000000 0000 011112345566778
Q ss_pred CcEeEEecc
Q 023515 82 CDGVCHTAS 90 (281)
Q Consensus 82 ~d~Vih~a~ 90 (281)
+|+||-+..
T Consensus 83 aDvViiaVp 91 (467)
T 2q3e_A 83 ADLVFISVN 91 (467)
T ss_dssp CSEEEECCC
T ss_pred CCEEEEEcC
Confidence 999998864
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0012 Score=54.52 Aligned_cols=63 Identities=22% Similarity=0.152 Sum_probs=50.2
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+.+++|.|.| .|.||+.+++.|...|++|++.+|+..+... ....++++++++++|+|+
T Consensus 120 l~g~tvGIIG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~--------------------~~~~~~l~ell~~aDiV~ 178 (290)
T 3gvx_A 120 LYGKALGILG-YGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV--------------------DVISESPADLFRQSDFVL 178 (290)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSSCCCTTC--------------------SEECSSHHHHHHHCSEEE
T ss_pred eecchheeec-cCchhHHHHHHHHhhCcEEEEEecccccccc--------------------ccccCChHHHhhccCeEE
Confidence 5689999999 6999999999999999999999987654211 112346888899999998
Q ss_pred Eecc
Q 023515 87 HTAS 90 (281)
Q Consensus 87 h~a~ 90 (281)
.+..
T Consensus 179 l~~P 182 (290)
T 3gvx_A 179 IAIP 182 (290)
T ss_dssp ECCC
T ss_pred EEee
Confidence 8763
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00037 Score=59.31 Aligned_cols=72 Identities=10% Similarity=0.100 Sum_probs=50.4
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHH---Hh--cCCcE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDS---IV--DGCDG 84 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~---~~--~~~d~ 84 (281)
++++|+||+|.||...++.+...|.+|+++++++++.+.+.++. ... . .|..+.+..+. +. +++|+
T Consensus 166 ~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~~G------a~~-~--~~~~~~~~~~~v~~~~~~~g~D~ 236 (349)
T 3pi7_A 166 KAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDIG------AAH-V--LNEKAPDFEATLREVMKAEQPRI 236 (349)
T ss_dssp SEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHT------CSE-E--EETTSTTHHHHHHHHHHHHCCCE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC------CCE-E--EECCcHHHHHHHHHHhcCCCCcE
Confidence 78999999999999999999889999999998876655543321 111 1 24433322222 22 27999
Q ss_pred eEEecc
Q 023515 85 VCHTAS 90 (281)
Q Consensus 85 Vih~a~ 90 (281)
||+++|
T Consensus 237 vid~~g 242 (349)
T 3pi7_A 237 FLDAVT 242 (349)
T ss_dssp EEESSC
T ss_pred EEECCC
Confidence 999986
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00043 Score=59.34 Aligned_cols=75 Identities=17% Similarity=0.207 Sum_probs=53.1
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 87 (281)
.+.+|||+|+ |.||..+++.+...|.+|+++++++++.+...+. + +... ..|..+.+.+.++..++|+||+
T Consensus 187 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~--l-----Ga~~-v~~~~~~~~~~~~~~~~D~vid 257 (366)
T 1yqd_A 187 PGKHIGIVGL-GGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKN--F-----GADS-FLVSRDQEQMQAAAGTLDGIID 257 (366)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHT--S-----CCSE-EEETTCHHHHHHTTTCEEEEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh--c-----CCce-EEeccCHHHHHHhhCCCCEEEE
Confidence 5789999996 9999999999999999999999887554332211 1 1111 1345554556655568999999
Q ss_pred eccc
Q 023515 88 TASP 91 (281)
Q Consensus 88 ~a~~ 91 (281)
+++.
T Consensus 258 ~~g~ 261 (366)
T 1yqd_A 258 TVSA 261 (366)
T ss_dssp CCSS
T ss_pred CCCc
Confidence 9863
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00027 Score=59.86 Aligned_cols=73 Identities=23% Similarity=0.237 Sum_probs=50.5
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHH---HHhcCCcE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFD---SIVDGCDG 84 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~---~~~~~~d~ 84 (281)
.+.+|||+|+ |.||..+++.+...|.+|++++|++++.+.+.++ ++.. ..|..+.+..+ ++..++|+
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l--------Ga~~-~~d~~~~~~~~~~~~~~~~~d~ 233 (339)
T 1rjw_A 164 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKEL--------GADL-VVNPLKEDAAKFMKEKVGGVHA 233 (339)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT--------TCSE-EECTTTSCHHHHHHHHHSSEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHC--------CCCE-EecCCCccHHHHHHHHhCCCCE
Confidence 4789999999 7799999999999999999999876554443322 1111 23655433222 22247999
Q ss_pred eEEecc
Q 023515 85 VCHTAS 90 (281)
Q Consensus 85 Vih~a~ 90 (281)
||++++
T Consensus 234 vid~~g 239 (339)
T 1rjw_A 234 AVVTAV 239 (339)
T ss_dssp EEESSC
T ss_pred EEECCC
Confidence 999986
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0023 Score=54.32 Aligned_cols=69 Identities=17% Similarity=0.279 Sum_probs=52.2
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
.+.+|+|.|.| .|.||+.+++.|...|++|++.+|++.+.+..... ++.. .++++++++++|+|
T Consensus 161 ~l~gktvGIIG-~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~--------g~~~-------~~~l~ell~~aDvV 224 (351)
T 3jtm_A 161 DLEGKTIGTVG-AGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKET--------GAKF-------VEDLNEMLPKCDVI 224 (351)
T ss_dssp CSTTCEEEEEC-CSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHH--------CCEE-------CSCHHHHGGGCSEE
T ss_pred cccCCEEeEEE-eCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhC--------CCeE-------cCCHHHHHhcCCEE
Confidence 35689999999 69999999999999999999999876544332211 1221 24688899999999
Q ss_pred EEecc
Q 023515 86 CHTAS 90 (281)
Q Consensus 86 ih~a~ 90 (281)
+.+..
T Consensus 225 ~l~~P 229 (351)
T 3jtm_A 225 VINMP 229 (351)
T ss_dssp EECSC
T ss_pred EECCC
Confidence 87763
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00053 Score=56.85 Aligned_cols=69 Identities=17% Similarity=0.217 Sum_probs=51.4
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+.+++|+|.| .|.||+.+++.|...|.+|++.+|+..+....... ++..+ +.++++++++++|+|+
T Consensus 153 l~g~~v~IiG-~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~--------g~~~~-----~~~~l~~~l~~aDvVi 218 (293)
T 3d4o_A 153 IHGANVAVLG-LGRVGMSVARKFAALGAKVKVGARESDLLARIAEM--------GMEPF-----HISKAAQELRDVDVCI 218 (293)
T ss_dssp STTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT--------TSEEE-----EGGGHHHHTTTCSEEE
T ss_pred CCCCEEEEEe-eCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHC--------CCeec-----ChhhHHHHhcCCCEEE
Confidence 5689999999 59999999999999999999999976433222111 22222 2345778889999999
Q ss_pred Eec
Q 023515 87 HTA 89 (281)
Q Consensus 87 h~a 89 (281)
.+.
T Consensus 219 ~~~ 221 (293)
T 3d4o_A 219 NTI 221 (293)
T ss_dssp ECC
T ss_pred ECC
Confidence 876
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00077 Score=59.63 Aligned_cols=37 Identities=22% Similarity=0.255 Sum_probs=33.9
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHC-CC-EEEEEEcCCC
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSR-GY-TVKASVRDPN 44 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~-g~-~V~~~~r~~~ 44 (281)
+++|+|.|.| +|++|..++..|++. |+ +|++++|+++
T Consensus 16 ~~~mkIaVIG-lG~mG~~lA~~la~~~G~~~V~~~D~~~~ 54 (478)
T 3g79_A 16 GPIKKIGVLG-MGYVGIPAAVLFADAPCFEKVLGFQRNSK 54 (478)
T ss_dssp CSCCEEEEEC-CSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred CCCCEEEEEC-cCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence 3467999998 599999999999999 99 9999999987
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00052 Score=57.05 Aligned_cols=64 Identities=14% Similarity=0.174 Sum_probs=42.7
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEec
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a 89 (281)
+||.+.| .|.+|..+++.|++.||+|++.+|++++.+.+... +++. .++..++++++|+||-+.
T Consensus 6 ~kIgfIG-LG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~--------G~~~-------~~s~~e~~~~~dvvi~~l 69 (297)
T 4gbj_A 6 EKIAFLG-LGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKL--------GATV-------VENAIDAITPGGIVFSVL 69 (297)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEC-------CTTTTT--------TCEE-------CSSGGGGCCTTCEEEECC
T ss_pred CcEEEEe-cHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHc--------CCeE-------eCCHHHHHhcCCceeeec
Confidence 5799998 69999999999999999999999998877664332 2221 234566677788888764
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00061 Score=56.64 Aligned_cols=35 Identities=17% Similarity=0.376 Sum_probs=32.1
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDP 43 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 43 (281)
+++|.|.||+|.+|..++..|.+.|++|++++|++
T Consensus 21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~ 55 (298)
T 2pv7_A 21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDRED 55 (298)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence 56899999999999999999999999999998765
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00067 Score=57.71 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=28.4
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRG-YTVKASV 40 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~ 40 (281)
++++|.|.||+|++|+.+++.|.++. .+++.+.
T Consensus 3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~ 36 (350)
T 2ep5_A 3 DKIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVS 36 (350)
T ss_dssp CCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred CCcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEe
Confidence 35689999999999999999998775 5888775
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00053 Score=56.66 Aligned_cols=64 Identities=19% Similarity=0.260 Sum_probs=48.7
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEec
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a 89 (281)
|+|.|.| +|.+|..+++.|++.|++|++.+|++++.+.+.+. ++. -..++.++++++|+||-+.
T Consensus 2 ~~i~iIG-~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~--------g~~-------~~~~~~~~~~~aDvvi~~v 65 (287)
T 3pef_A 2 QKFGFIG-LGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAAL--------GAE-------RAATPCEVVESCPVTFAML 65 (287)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHT--------TCE-------ECSSHHHHHHHCSEEEECC
T ss_pred CEEEEEe-ecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHC--------CCe-------ecCCHHHHHhcCCEEEEEc
Confidence 5799999 59999999999999999999999987765554332 121 1245677777889988765
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00078 Score=56.05 Aligned_cols=39 Identities=21% Similarity=0.186 Sum_probs=34.4
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcc
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPK 47 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~ 47 (281)
.+++|.|.|+ |.+|..++..|++.|++|++++|+++..+
T Consensus 14 ~~~~I~VIG~-G~mG~~iA~~la~~G~~V~~~d~~~~~~~ 52 (302)
T 1f0y_A 14 IVKHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTEDILA 52 (302)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred cCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHH
Confidence 4678999997 99999999999999999999999875544
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00027 Score=58.40 Aligned_cols=65 Identities=17% Similarity=0.191 Sum_probs=48.9
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEe
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~ 88 (281)
|++|.|.| +|.+|..+++.|++.|++|++.+|++++.+.+.+. ++. -..+..++++++|+||-+
T Consensus 1 M~~I~iiG-~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~--------g~~-------~~~~~~~~~~~advvi~~ 64 (287)
T 3pdu_A 1 MTTYGFLG-LGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVAL--------GAR-------QASSPAEVCAACDITIAM 64 (287)
T ss_dssp CCCEEEEC-CSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHH--------TCE-------ECSCHHHHHHHCSEEEEC
T ss_pred CCeEEEEc-cCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHC--------CCe-------ecCCHHHHHHcCCEEEEE
Confidence 35799998 69999999999999999999999988766554332 111 123566677788888876
Q ss_pred c
Q 023515 89 A 89 (281)
Q Consensus 89 a 89 (281)
.
T Consensus 65 v 65 (287)
T 3pdu_A 65 L 65 (287)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00022 Score=63.46 Aligned_cols=42 Identities=14% Similarity=0.165 Sum_probs=35.0
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHC--CCEEEEEEcCCCCcchh
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSR--GYTVKASVRDPNDPKKT 49 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~ 49 (281)
+++|+|.|.| +|++|..++..|++. |++|++++|++++.+.+
T Consensus 7 ~~~mkI~VIG-~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l 50 (481)
T 2o3j_A 7 GKVSKVVCVG-AGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEW 50 (481)
T ss_dssp CCCCEEEEEC-CSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHH
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHH
Confidence 3467899999 599999999999998 79999999987655443
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00092 Score=56.36 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=29.6
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDP 43 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~ 43 (281)
|++|.|.||||++|+.+++.|.++. +++..+..+.
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~ 39 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSA 39 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEET
T ss_pred ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecC
Confidence 4689999999999999999999864 6888775544
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00048 Score=57.73 Aligned_cols=68 Identities=19% Similarity=0.181 Sum_probs=47.5
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCC--EEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHH-HhcCCcE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDS-IVDGCDG 84 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~-~~~~~d~ 84 (281)
+.++|.|.| .|.+|..+++.|.+.|+ +|++.+|+++..+..... + -+... ..++.+ +++++|+
T Consensus 32 ~~~kI~IIG-~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~----G---~~~~~------~~~~~~~~~~~aDv 97 (314)
T 3ggo_A 32 SMQNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----G---IIDEG------TTSIAKVEDFSPDF 97 (314)
T ss_dssp SCSEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----T---SCSEE------ESCTTGGGGGCCSE
T ss_pred CCCEEEEEe-eCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHC----C---Ccchh------cCCHHHHhhccCCE
Confidence 457999999 79999999999999998 999999987544332211 0 00000 123345 6778999
Q ss_pred eEEec
Q 023515 85 VCHTA 89 (281)
Q Consensus 85 Vih~a 89 (281)
||-+.
T Consensus 98 Vilav 102 (314)
T 3ggo_A 98 VMLSS 102 (314)
T ss_dssp EEECS
T ss_pred EEEeC
Confidence 99775
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0032 Score=45.85 Aligned_cols=88 Identities=19% Similarity=0.246 Sum_probs=56.3
Q ss_pred cCCCeEEEeCCc---hHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCc
Q 023515 7 AAGKVVCVTGAS---GYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCD 83 (281)
Q Consensus 7 ~~~~~ilItGat---G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d 83 (281)
...++|.|.|+| |.+|..+++.|++.|++|+.++.+.++ . ..+.-..++.++.+.+|
T Consensus 12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~--i------------------~G~~~~~s~~el~~~vD 71 (138)
T 1y81_A 12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDE--I------------------EGLKCYRSVRELPKDVD 71 (138)
T ss_dssp --CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE--E------------------TTEECBSSGGGSCTTCC
T ss_pred cCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCe--E------------------CCeeecCCHHHhCCCCC
Confidence 346789999997 899999999999999997766554311 1 11222344555556789
Q ss_pred EeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 84 GVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 84 ~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
+++-+... ..+..+++.|.+. +++.++..+|
T Consensus 72 lvii~vp~-----------------~~v~~v~~~~~~~-g~~~i~~~~~ 102 (138)
T 1y81_A 72 VIVFVVPP-----------------KVGLQVAKEAVEA-GFKKLWFQPG 102 (138)
T ss_dssp EEEECSCH-----------------HHHHHHHHHHHHT-TCCEEEECTT
T ss_pred EEEEEeCH-----------------HHHHHHHHHHHHc-CCCEEEEcCc
Confidence 98865420 1223455556665 6777666554
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0027 Score=51.05 Aligned_cols=72 Identities=17% Similarity=0.175 Sum_probs=49.5
Q ss_pred CeEEEeCCchHHHHHHHHHHHHC-CCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----CCc
Q 023515 10 KVVCVTGASGYIASWLVKLLLSR-GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-----GCD 83 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-----~~d 83 (281)
++|.|.|++|.+|+.+++.+.+. ++++++...+..+.+. .... +.. +..|++.++...+.++ +++
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~---~~~~-----~~D-vvIDfT~p~a~~~~~~~a~~~g~~ 71 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSL---LTDG-----NTE-VVIDFTHPDVVMGNLEFLIDNGIH 71 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHH---HHHT-----TCC-EEEECSCTTTHHHHHHHHHHTTCE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHH---Hhcc-----CCc-EEEEccChHHHHHHHHHHHHcCCC
Confidence 47999999999999999999876 7998877655433222 1110 122 5568888887665543 678
Q ss_pred EeEEecc
Q 023515 84 GVCHTAS 90 (281)
Q Consensus 84 ~Vih~a~ 90 (281)
+|+-..|
T Consensus 72 ~VigTTG 78 (245)
T 1p9l_A 72 AVVGTTG 78 (245)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 8875544
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00092 Score=56.50 Aligned_cols=93 Identities=16% Similarity=0.145 Sum_probs=55.7
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCC---CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRG---YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
|++|.|.||||++|+.+++.|.+++ .+++.+.........+. .. ...+.+. +. +++. ++++|+|
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~----~~--~~~i~~~--~~-~~~~----~~~vDvV 69 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYR----FN--GKTVRVQ--NV-EEFD----WSQVHIA 69 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEE----ET--TEEEEEE--EG-GGCC----GGGCSEE
T ss_pred ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCcee----ec--CceeEEe--cC-ChHH----hcCCCEE
Confidence 5689999999999999999999883 56777763221111110 10 1123332 22 2222 2589999
Q ss_pred EEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccc
Q 023515 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (281)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (281)
|-+.+- ..+......+.+. ++ ++|-.|+.
T Consensus 70 f~a~g~-----------------~~s~~~a~~~~~~-G~-~vId~s~~ 98 (336)
T 2r00_A 70 LFSAGG-----------------ELSAKWAPIAAEA-GV-VVIDNTSH 98 (336)
T ss_dssp EECSCH-----------------HHHHHHHHHHHHT-TC-EEEECSST
T ss_pred EECCCc-----------------hHHHHHHHHHHHc-CC-EEEEcCCc
Confidence 987642 1134455556665 55 67877875
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00027 Score=57.26 Aligned_cols=67 Identities=24% Similarity=0.288 Sum_probs=50.0
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
++ +++|.|+ |..|++++..|++.|. +|++++|+.++.+.+.+. +... ..+++.++++++|+||
T Consensus 108 ~~-~vliiGa-Gg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~---------~~~~-----~~~~~~~~~~~aDiVI 171 (253)
T 3u62_A 108 KE-PVVVVGA-GGAARAVIYALLQMGVKDIWVVNRTIERAKALDFP---------VKIF-----SLDQLDEVVKKAKSLF 171 (253)
T ss_dssp CS-SEEEECC-SHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSS---------CEEE-----EGGGHHHHHHTCSEEE
T ss_pred CC-eEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH---------cccC-----CHHHHHhhhcCCCEEE
Confidence 46 8999996 9999999999999997 899999987655443221 1111 2245667788999999
Q ss_pred Eecc
Q 023515 87 HTAS 90 (281)
Q Consensus 87 h~a~ 90 (281)
++..
T Consensus 172 natp 175 (253)
T 3u62_A 172 NTTS 175 (253)
T ss_dssp ECSS
T ss_pred ECCC
Confidence 9763
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00053 Score=58.58 Aligned_cols=75 Identities=15% Similarity=0.116 Sum_probs=54.7
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCC------------------
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL------------------ 69 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~------------------ 69 (281)
.+.+|+|.|+ |-+|..+++.|...|.+|++++|++.+.+.+..+ +.+++..++
T Consensus 183 ~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~l--------Ga~~~~l~~~~~~~~gya~~~~~~~~~ 253 (381)
T 3p2y_A 183 KPASALVLGV-GVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSV--------GAQWLDLGIDAAGEGGYARELSEAERA 253 (381)
T ss_dssp CCCEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHT--------TCEECCCC-------------CHHHHH
T ss_pred CCCEEEEECc-hHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc--------CCeEEeccccccccccchhhhhHHHHh
Confidence 5689999997 9999999999999999999999998765554332 233332221
Q ss_pred CCcCcHHHHhcCCcEeEEeccc
Q 023515 70 LEEGSFDSIVDGCDGVCHTASP 91 (281)
Q Consensus 70 ~~~~~~~~~~~~~d~Vih~a~~ 91 (281)
.+.+.+.++++++|+||.++..
T Consensus 254 ~~~~~l~e~l~~aDIVI~tv~i 275 (381)
T 3p2y_A 254 QQQQALEDAITKFDIVITTALV 275 (381)
T ss_dssp HHHHHHHHHHTTCSEEEECCCC
T ss_pred hhHHHHHHHHhcCCEEEECCCC
Confidence 1124577788899999987643
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0012 Score=57.84 Aligned_cols=79 Identities=15% Similarity=0.081 Sum_probs=52.7
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEE-E-----EEcCCCCcCcHHHHhcCCc
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQ-L-----FKANLLEEGSFDSIVDGCD 83 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~-----~~~D~~~~~~~~~~~~~~d 83 (281)
-+|.|.| +|++|..++..|++.|++|++.+|++++.+.+.+....... .++. . ..+.++-..++.++++++|
T Consensus 9 ~~~~vIG-lG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~e-pgl~~~~~~~~~~g~l~~ttd~~ea~~~aD 86 (446)
T 4a7p_A 9 VRIAMIG-TGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYE-PGLDALVASNVKAGRLSFTTDLAEGVKDAD 86 (446)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCC-TTHHHHHHHHHHTTCEEEESCHHHHHTTCS
T ss_pred eEEEEEc-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccC-CCHHHHHHhhcccCCEEEECCHHHHHhcCC
Confidence 4688999 69999999999999999999999999877665442110000 0000 0 0011222245677888999
Q ss_pred EeEEecc
Q 023515 84 GVCHTAS 90 (281)
Q Consensus 84 ~Vih~a~ 90 (281)
+||-+.+
T Consensus 87 vvii~Vp 93 (446)
T 4a7p_A 87 AVFIAVG 93 (446)
T ss_dssp EEEECCC
T ss_pred EEEEEcC
Confidence 9998764
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00091 Score=57.67 Aligned_cols=43 Identities=16% Similarity=0.071 Sum_probs=36.8
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchh
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKT 49 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~ 49 (281)
.+.+++|+|+|+ |.+|..+++.+...|.+|++++|++.+.+..
T Consensus 169 ~l~g~~V~ViGa-G~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~ 211 (384)
T 1l7d_A 169 TVPPARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAATKEQV 211 (384)
T ss_dssp EECCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCSTTHHHH
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 346889999995 9999999999999999999999988765443
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0031 Score=53.34 Aligned_cols=96 Identities=19% Similarity=0.163 Sum_probs=63.3
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+.+++|.|.| .|.||+.+++.|...|++|++.+|+..+... ..+.+ .+++++++++|+|+
T Consensus 146 l~gktvgIiG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~-----------~~~~~--------~~l~ell~~aDvV~ 205 (343)
T 2yq5_A 146 IYNLTVGLIG-VGHIGSAVAEIFSAMGAKVIAYDVAYNPEFE-----------PFLTY--------TDFDTVLKEADIVS 205 (343)
T ss_dssp GGGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCGGGT-----------TTCEE--------CCHHHHHHHCSEEE
T ss_pred cCCCeEEEEe-cCHHHHHHHHHHhhCCCEEEEECCChhhhhh-----------ccccc--------cCHHHHHhcCCEEE
Confidence 4589999999 6999999999999999999999998753100 11222 26788889999998
Q ss_pred EecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceee
Q 023515 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAV 136 (281)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~ 136 (281)
.+...... +. .++. ...+..+++ ..-||++|+....
T Consensus 206 l~~Plt~~--t~---~li~------~~~l~~mk~---gailIN~aRg~~v 241 (343)
T 2yq5_A 206 LHTPLFPS--TE---NMIG------EKQLKEMKK---SAYLINCARGELV 241 (343)
T ss_dssp ECCCCCTT--TT---TCBC------HHHHHHSCT---TCEEEECSCGGGB
T ss_pred EcCCCCHH--HH---HHhh------HHHHhhCCC---CcEEEECCCChhh
Confidence 77632221 11 2221 123333333 2468888876543
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00054 Score=55.26 Aligned_cols=39 Identities=26% Similarity=0.376 Sum_probs=33.1
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND 45 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 45 (281)
.+.+++|.|.| +|.+|.++++.|++.|++|++.+|++++
T Consensus 16 ~~~~~kIgiIG-~G~mG~alA~~L~~~G~~V~~~~r~~~~ 54 (245)
T 3dtt_A 16 YFQGMKIAVLG-TGTVGRTMAGALADLGHEVTIGTRDPKA 54 (245)
T ss_dssp ---CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred ccCCCeEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCChhh
Confidence 35678999998 7999999999999999999999998654
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00072 Score=57.75 Aligned_cols=74 Identities=22% Similarity=0.145 Sum_probs=52.1
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCc-CcHHHHhcCCcEeE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEE-GSFDSIVDGCDGVC 86 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~d~Vi 86 (281)
.+.+|||+|+ |.+|..+++.+...|.+|+++++++.+.+.+.++. ... . .|..+. +..+.+..++|+||
T Consensus 179 ~g~~VlV~Ga-G~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lG------a~~-v--~~~~~~~~~~~~~~~~~D~vi 248 (360)
T 1piw_A 179 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDAMKMG------ADH-Y--IATLEEGDWGEKYFDTFDLIV 248 (360)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHT------CSE-E--EEGGGTSCHHHHSCSCEEEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcC------CCE-E--EcCcCchHHHHHhhcCCCEEE
Confidence 4789999999 99999999988888999999999887765544331 111 1 244333 22333334799999
Q ss_pred Eeccc
Q 023515 87 HTASP 91 (281)
Q Consensus 87 h~a~~ 91 (281)
.+++.
T Consensus 249 d~~g~ 253 (360)
T 1piw_A 249 VCASS 253 (360)
T ss_dssp ECCSC
T ss_pred ECCCC
Confidence 99864
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00041 Score=57.01 Aligned_cols=70 Identities=21% Similarity=0.243 Sum_probs=50.4
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+.+++|+|.|+ |.+|+++++.|.+.|++|++.+|+.++.+.+.... ++.. .+ ++.++++++|+||
T Consensus 127 ~~~~~v~iiGa-G~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~-------g~~~-----~~--~~~~~~~~aDiVi 191 (275)
T 2hk9_A 127 VKEKSILVLGA-GGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKF-------PLEV-----VN--SPEEVIDKVQVIV 191 (275)
T ss_dssp GGGSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTS-------CEEE-----CS--CGGGTGGGCSEEE
T ss_pred cCCCEEEEECc-hHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHc-------CCee-----eh--hHHhhhcCCCEEE
Confidence 35789999995 89999999999999999999998865444332211 2221 11 3556677899999
Q ss_pred Eeccc
Q 023515 87 HTASP 91 (281)
Q Consensus 87 h~a~~ 91 (281)
++...
T Consensus 192 ~atp~ 196 (275)
T 2hk9_A 192 NTTSV 196 (275)
T ss_dssp ECSST
T ss_pred EeCCC
Confidence 98754
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0026 Score=53.58 Aligned_cols=68 Identities=15% Similarity=0.117 Sum_probs=50.4
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
.+.+++|.|.|. |.||+.+++.|...|++|++.+|+..+.+.... .++.+ .++.++++++|+|
T Consensus 152 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~--------~g~~~--------~~l~e~l~~aDvV 214 (330)
T 2gcg_A 152 GLTQSTVGIIGL-GRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAE--------FQAEF--------VSTPELAAQSDFI 214 (330)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHT--------TTCEE--------CCHHHHHHHCSEE
T ss_pred CCCCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCCCcchhHHHh--------cCcee--------CCHHHHHhhCCEE
Confidence 356899999995 999999999999999999999988754433111 12222 1466778889999
Q ss_pred EEecc
Q 023515 86 CHTAS 90 (281)
Q Consensus 86 ih~a~ 90 (281)
+-+..
T Consensus 215 i~~vp 219 (330)
T 2gcg_A 215 VVACS 219 (330)
T ss_dssp EECCC
T ss_pred EEeCC
Confidence 87763
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0013 Score=56.60 Aligned_cols=76 Identities=17% Similarity=0.105 Sum_probs=54.9
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcC----------------CCC
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKAN----------------LLE 71 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D----------------~~~ 71 (281)
.+.+|+|+|+ |-+|...++.|...|.+|+++++++.+.+.+..+ +..++..+ +++
T Consensus 189 ~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~--------G~~~~~~~~~~~~d~~~~~~ya~e~s~ 259 (405)
T 4dio_A 189 PAAKIFVMGA-GVAGLQAIATARRLGAVVSATDVRPAAKEQVASL--------GAKFIAVEDEEFKAAETAGGYAKEMSG 259 (405)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHT--------TCEECCCCC-----------------C
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHc--------CCceeecccccccccccccchhhhcch
Confidence 5679999997 9999999999999999999999998765444332 12232222 112
Q ss_pred ------cCcHHHHhcCCcEeEEecccC
Q 023515 72 ------EGSFDSIVDGCDGVCHTASPF 92 (281)
Q Consensus 72 ------~~~~~~~~~~~d~Vih~a~~~ 92 (281)
.+.+.++++++|+||+++...
T Consensus 260 ~~~~~~~~~l~e~l~~aDVVI~tvlip 286 (405)
T 4dio_A 260 EYQVKQAALVAEHIAKQDIVITTALIP 286 (405)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEECCCCS
T ss_pred hhhhhhHhHHHHHhcCCCEEEECCcCC
Confidence 235777888999999987543
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00049 Score=58.48 Aligned_cols=97 Identities=22% Similarity=0.203 Sum_probs=61.5
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHH---hc--C
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI---VD--G 81 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~---~~--~ 81 (281)
.+.+|||+|+ |.||..+++.+...|. +|+++++++++.+.+.++ ++.. ..|..+.+..+.+ .. +
T Consensus 167 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~--------Ga~~-~~~~~~~~~~~~v~~~~~g~g 236 (348)
T 2d8a_A 167 SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKV--------GADY-VINPFEEDVVKEVMDITDGNG 236 (348)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHH--------TCSE-EECTTTSCHHHHHHHHTTTSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh--------CCCE-EECCCCcCHHHHHHHHcCCCC
Confidence 5788999999 9999999999999998 999999876544443322 1111 1344443322222 22 6
Q ss_pred CcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccc
Q 023515 82 CDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (281)
Q Consensus 82 ~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (281)
+|+||++++.. ......++.+++. .+++.+++.
T Consensus 237 ~D~vid~~g~~----------------~~~~~~~~~l~~~---G~iv~~g~~ 269 (348)
T 2d8a_A 237 VDVFLEFSGAP----------------KALEQGLQAVTPA---GRVSLLGLY 269 (348)
T ss_dssp EEEEEECSCCH----------------HHHHHHHHHEEEE---EEEEECCCC
T ss_pred CCEEEECCCCH----------------HHHHHHHHHHhcC---CEEEEEccC
Confidence 89999998620 1123344555443 578888763
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00052 Score=57.08 Aligned_cols=65 Identities=18% Similarity=0.125 Sum_probs=48.4
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEe
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~ 88 (281)
|++|.+.| .|.+|+.+++.|++.||+|++.+|++++.+.+... +.+ -.++..++++.+|+||-|
T Consensus 3 M~kIgfIG-lG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~--------Ga~-------~a~s~~e~~~~~dvv~~~ 66 (300)
T 3obb_A 3 MKQIAFIG-LGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAA--------GAS-------AARSARDAVQGADVVISM 66 (300)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHT--------TCE-------ECSSHHHHHTTCSEEEEC
T ss_pred cCEEEEee-ehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHc--------CCE-------EcCCHHHHHhcCCceeec
Confidence 67899999 79999999999999999999999987766554332 111 123456666677777766
Q ss_pred c
Q 023515 89 A 89 (281)
Q Consensus 89 a 89 (281)
-
T Consensus 67 l 67 (300)
T 3obb_A 67 L 67 (300)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0004 Score=61.65 Aligned_cols=80 Identities=14% Similarity=-0.013 Sum_probs=50.1
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEE-EE-----EcCCCCcCcHHHHhcCC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQ-LF-----KANLLEEGSFDSIVDGC 82 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~-----~~D~~~~~~~~~~~~~~ 82 (281)
.|+|.|.| +|++|..++..|++.|++|++++|++++.+.+.+....... .+.. .+ .+.+.-..++.++++++
T Consensus 8 ~~~I~VIG-~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e-~gl~~~l~~~~~~~~l~~ttd~~~a~~~a 85 (478)
T 2y0c_A 8 SMNLTIIG-SGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHE-PGLKEVIARNRSAGRLRFSTDIEAAVAHG 85 (478)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCC-TTHHHHHHHHHHTTCEEEECCHHHHHHHC
T ss_pred CceEEEEC-cCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCC-CCHHHHHHHhcccCCEEEECCHHHHhhcC
Confidence 35899998 69999999999999999999999987655444332100000 0000 00 00111123455667789
Q ss_pred cEeEEecc
Q 023515 83 DGVCHTAS 90 (281)
Q Consensus 83 d~Vih~a~ 90 (281)
|+||-+..
T Consensus 86 DvviiaVp 93 (478)
T 2y0c_A 86 DVQFIAVG 93 (478)
T ss_dssp SEEEECCC
T ss_pred CEEEEEeC
Confidence 99998764
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00055 Score=59.49 Aligned_cols=71 Identities=21% Similarity=0.176 Sum_probs=52.2
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
..+++|+|.|+ |.+|+.+++.|...|. +|++++|+.++...+.... +... . +.+++.++++++|+|
T Consensus 165 l~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~-------g~~~--~---~~~~l~~~l~~aDvV 231 (404)
T 1gpj_A 165 LHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL-------GGEA--V---RFDELVDHLARSDVV 231 (404)
T ss_dssp CTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH-------TCEE--C---CGGGHHHHHHTCSEE
T ss_pred ccCCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc-------CCce--e---cHHhHHHHhcCCCEE
Confidence 56899999997 9999999999999998 9999999865443322211 1221 1 224577777899999
Q ss_pred EEecc
Q 023515 86 CHTAS 90 (281)
Q Consensus 86 ih~a~ 90 (281)
|.+.+
T Consensus 232 i~at~ 236 (404)
T 1gpj_A 232 VSATA 236 (404)
T ss_dssp EECCS
T ss_pred EEccC
Confidence 99875
|
| >3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0017 Score=55.84 Aligned_cols=68 Identities=16% Similarity=0.258 Sum_probs=51.6
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 87 (281)
||+|+|+|+ |.+|+.+++.|.+.|++|++++..+..... .. . -.++..|..|.+.+.++++++|.|+.
T Consensus 1 M~~Ililg~-g~~g~~~~~a~~~~G~~v~~~~~~~~~~~~--~~-------~-~~~~~~~~~d~~~l~~~~~~~d~v~~ 68 (380)
T 3ax6_A 1 MKKIGIIGG-GQLGKMMTLEAKKMGFYVIVLDPTPRSPAG--QV-------A-DEQIVAGFFDSERIEDLVKGSDVTTY 68 (380)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSTTCTTG--GG-------S-SEEEECCTTCHHHHHHHHHTCSEEEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCCchh--hh-------C-ceEEECCCCCHHHHHHHHhcCCEEEe
Confidence 468999996 789999999999999999999876543211 01 1 13456788888888888888999875
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0018 Score=52.87 Aligned_cols=56 Identities=21% Similarity=0.224 Sum_probs=47.4
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+.+++++|.|+++.+|+.++..|+.+|.+|+++.|.. ..+.+.++++|+||
T Consensus 158 l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t-----------------------------~~L~~~~~~ADIVI 208 (285)
T 3p2o_A 158 LEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT-----------------------------KDLSLYTRQADLII 208 (285)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC-----------------------------SCHHHHHTTCSEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc-----------------------------hhHHHHhhcCCEEE
Confidence 5789999999999999999999999999999886431 24667788999999
Q ss_pred Eeccc
Q 023515 87 HTASP 91 (281)
Q Consensus 87 h~a~~ 91 (281)
...+.
T Consensus 209 ~Avg~ 213 (285)
T 3p2o_A 209 VAAGC 213 (285)
T ss_dssp ECSSC
T ss_pred ECCCC
Confidence 98864
|
| >3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0012 Score=57.22 Aligned_cols=70 Identities=20% Similarity=0.219 Sum_probs=53.5
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCc-chhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP-KKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
|++++|+|.|+ |.+|+.+++.+.+.|++|++++ .+... ..+. .....+.+|..|.+.+.++++.+|+|
T Consensus 22 m~~~~I~ilGg-G~lg~~l~~aa~~lG~~v~~~d-~~~~p~~~~a---------d~~~~~~~~~~d~~~l~~~a~~~d~i 90 (403)
T 3k5i_A 22 WNSRKVGVLGG-GQLGRMLVESANRLNIQVNVLD-ADNSPAKQIS---------AHDGHVTGSFKEREAVRQLAKTCDVV 90 (403)
T ss_dssp CSCCEEEEECC-SHHHHHHHHHHHHHTCEEEEEE-STTCTTGGGC---------CSSCCEESCTTCHHHHHHHHTTCSEE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEE-CCCCcHHHhc---------cccceeecCCCCHHHHHHHHHhCCEE
Confidence 45789999996 7899999999999999999999 54221 1111 11235678999999999999999987
Q ss_pred EE
Q 023515 86 CH 87 (281)
Q Consensus 86 ih 87 (281)
+-
T Consensus 91 ~~ 92 (403)
T 3k5i_A 91 TA 92 (403)
T ss_dssp EE
T ss_pred EE
Confidence 63
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00048 Score=57.42 Aligned_cols=67 Identities=12% Similarity=0.002 Sum_probs=46.4
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 87 (281)
++|+|.|.| +|.+|..+++.|++.|++|++.+|++++.+.+.+. +.... ..++.++++++|+||-
T Consensus 6 ~~~~I~iIG-~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~--------g~~~~------~~~~~e~~~~aDvvi~ 70 (303)
T 3g0o_A 6 TDFHVGIVG-LGSMGMGAARSCLRAGLSTWGADLNPQACANLLAE--------GACGA------AASAREFAGVVDALVI 70 (303)
T ss_dssp -CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT--------TCSEE------ESSSTTTTTTCSEEEE
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHc--------CCccc------cCCHHHHHhcCCEEEE
Confidence 356899998 69999999999999999999999987655443321 11111 1233445667788876
Q ss_pred ec
Q 023515 88 TA 89 (281)
Q Consensus 88 ~a 89 (281)
+.
T Consensus 71 ~v 72 (303)
T 3g0o_A 71 LV 72 (303)
T ss_dssp CC
T ss_pred EC
Confidence 64
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00091 Score=56.82 Aligned_cols=68 Identities=21% Similarity=0.253 Sum_probs=49.9
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 87 (281)
.+.+|||+|+ |.||...++.+...|.+|+++++++++.+.+.++ +...+. .+.+.+. +++|+||.
T Consensus 176 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l--------Ga~~v~---~~~~~~~---~~~D~vid 240 (348)
T 3two_A 176 KGTKVGVAGF-GGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSM--------GVKHFY---TDPKQCK---EELDFIIS 240 (348)
T ss_dssp TTCEEEEESC-SHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHT--------TCSEEE---SSGGGCC---SCEEEEEE
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhc--------CCCeec---CCHHHHh---cCCCEEEE
Confidence 4789999997 9999999999989999999999988776654443 122222 3333332 28999999
Q ss_pred ecc
Q 023515 88 TAS 90 (281)
Q Consensus 88 ~a~ 90 (281)
+++
T Consensus 241 ~~g 243 (348)
T 3two_A 241 TIP 243 (348)
T ss_dssp CCC
T ss_pred CCC
Confidence 886
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0015 Score=54.65 Aligned_cols=66 Identities=9% Similarity=0.169 Sum_probs=50.5
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
.+.+|+|.|.| .|.||+.+++.|...|++|++.+|++..... +.... ...+++++++++|+|
T Consensus 136 ~l~g~tvGIiG-~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-------------~~~~~----~~~~l~ell~~aDiV 197 (315)
T 3pp8_A 136 TREEFSVGIMG-AGVLGAKVAESLQAWGFPLRCWSRSRKSWPG-------------VESYV----GREELRAFLNQTRVL 197 (315)
T ss_dssp CSTTCCEEEEC-CSHHHHHHHHHHHTTTCCEEEEESSCCCCTT-------------CEEEE----SHHHHHHHHHTCSEE
T ss_pred CcCCCEEEEEe-eCHHHHHHHHHHHHCCCEEEEEcCCchhhhh-------------hhhhc----ccCCHHHHHhhCCEE
Confidence 35689999999 5999999999999999999999998754321 11111 125688889999998
Q ss_pred EEec
Q 023515 86 CHTA 89 (281)
Q Consensus 86 ih~a 89 (281)
+.+.
T Consensus 198 ~l~~ 201 (315)
T 3pp8_A 198 INLL 201 (315)
T ss_dssp EECC
T ss_pred EEec
Confidence 8765
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00076 Score=55.52 Aligned_cols=66 Identities=15% Similarity=0.130 Sum_probs=49.2
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCC---EEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGY---TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
+++|.|.|+ |.+|.++++.|++.|+ +|++.+|++++.+.+.... ++.. ..+..++++++|+|
T Consensus 3 ~~~I~iIG~-G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~-------gi~~-------~~~~~~~~~~aDvV 67 (280)
T 3tri_A 3 TSNITFIGG-GNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKC-------GVHT-------TQDNRQGALNADVV 67 (280)
T ss_dssp CSCEEEESC-SHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTT-------CCEE-------ESCHHHHHSSCSEE
T ss_pred CCEEEEEcc-cHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHc-------CCEE-------eCChHHHHhcCCeE
Confidence 568999996 9999999999999998 8999999876554433211 2221 23456678899999
Q ss_pred EEec
Q 023515 86 CHTA 89 (281)
Q Consensus 86 ih~a 89 (281)
|-+.
T Consensus 68 ilav 71 (280)
T 3tri_A 68 VLAV 71 (280)
T ss_dssp EECS
T ss_pred EEEe
Confidence 8765
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00019 Score=61.46 Aligned_cols=79 Identities=11% Similarity=0.049 Sum_probs=48.6
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEe
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~ 88 (281)
|++|.|.|+ |.+|.+++..|++.|++|++.+|++++.+.+.+.........+.. +...+.-..+..++++++|+||-+
T Consensus 15 M~kI~iIG~-G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~aDvVila 92 (366)
T 1evy_A 15 LNKAVVFGS-GAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQ-LASNITFTSDVEKAYNGAEIILFV 92 (366)
T ss_dssp EEEEEEECC-SHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCB-CCTTEEEESCHHHHHTTCSSEEEC
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccc-cccceeeeCCHHHHHcCCCEEEEC
Confidence 338999995 999999999999999999999998655444332210000000100 000111113455667789999876
Q ss_pred c
Q 023515 89 A 89 (281)
Q Consensus 89 a 89 (281)
.
T Consensus 93 v 93 (366)
T 1evy_A 93 I 93 (366)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0013 Score=55.37 Aligned_cols=71 Identities=25% Similarity=0.266 Sum_probs=47.3
Q ss_pred eEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCc--CcHHHHh-cCCcEeEE
Q 023515 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEE--GSFDSIV-DGCDGVCH 87 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~--~~~~~~~-~~~d~Vih 87 (281)
+|||+||+|.+|...++.+...|.+|+++++++++.+.+.++. .... .|..+. +.+.++. .++|+||+
T Consensus 152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lG------a~~~---i~~~~~~~~~~~~~~~~~~d~vid 222 (328)
T 1xa0_A 152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLG------AKEV---LAREDVMAERIRPLDKQRWAAAVD 222 (328)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTT------CSEE---EECC---------CCSCCEEEEEE
T ss_pred eEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcC------CcEE---EecCCcHHHHHHHhcCCcccEEEE
Confidence 7999999999999999999999999999999877665544321 1111 133322 1122221 26899999
Q ss_pred ecc
Q 023515 88 TAS 90 (281)
Q Consensus 88 ~a~ 90 (281)
+++
T Consensus 223 ~~g 225 (328)
T 1xa0_A 223 PVG 225 (328)
T ss_dssp CST
T ss_pred CCc
Confidence 986
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00061 Score=55.30 Aligned_cols=66 Identities=21% Similarity=0.138 Sum_probs=47.7
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEe
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~ 88 (281)
||+|.|.| +|.+|+.+++.|.+.|++|.+.+|++++...+.+.. + +.-..++.++++++|+||-+
T Consensus 3 ~m~i~iiG-~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~-------g-------~~~~~~~~~~~~~~D~Vi~~ 67 (259)
T 2ahr_A 3 AMKIGIIG-VGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL-------A-------LPYAMSHQDLIDQVDLVILG 67 (259)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH-------T-------CCBCSSHHHHHHTCSEEEEC
T ss_pred ccEEEEEC-CCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHc-------C-------CEeeCCHHHHHhcCCEEEEE
Confidence 46899999 699999999999999999999998765444332211 1 11123456677789999887
Q ss_pred c
Q 023515 89 A 89 (281)
Q Consensus 89 a 89 (281)
.
T Consensus 68 v 68 (259)
T 2ahr_A 68 I 68 (259)
T ss_dssp S
T ss_pred e
Confidence 6
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0011 Score=55.49 Aligned_cols=65 Identities=23% Similarity=0.200 Sum_probs=47.6
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEe
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~ 88 (281)
.++|.|.| +|.+|+.+++.|.+.|++|++.+|++++.+.+... ++.. ..+..++++++|+||-+
T Consensus 30 ~~~I~iIG-~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~--------g~~~-------~~~~~~~~~~~DvVi~a 93 (316)
T 2uyy_A 30 DKKIGFLG-LGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQE--------GARL-------GRTPAEVVSTCDITFAC 93 (316)
T ss_dssp SSCEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHT--------TCEE-------CSCHHHHHHHCSEEEEC
T ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHc--------CCEE-------cCCHHHHHhcCCEEEEe
Confidence 47899999 59999999999999999999999987655443221 1211 12355667788998877
Q ss_pred c
Q 023515 89 A 89 (281)
Q Consensus 89 a 89 (281)
.
T Consensus 94 v 94 (316)
T 2uyy_A 94 V 94 (316)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0005 Score=57.08 Aligned_cols=64 Identities=22% Similarity=0.301 Sum_probs=46.8
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEec
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a 89 (281)
|+|.|.| +|.+|..+++.|.+.|++|++.+|++++.+.+... ++.. ..++.++++++|+||.+.
T Consensus 6 m~i~iiG-~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~--------g~~~-------~~~~~~~~~~~D~vi~~v 69 (299)
T 1vpd_A 6 MKVGFIG-LGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAA--------GAET-------ASTAKAIAEQCDVIITML 69 (299)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT--------TCEE-------CSSHHHHHHHCSEEEECC
T ss_pred ceEEEEC-chHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHC--------CCee-------cCCHHHHHhCCCEEEEEC
Confidence 5899999 69999999999999999999998876544332221 1211 234566677889988775
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00033 Score=57.62 Aligned_cols=67 Identities=12% Similarity=0.197 Sum_probs=48.3
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
..+++++|+|+ |..|++++..|.+.|. +|++++|+.++.+.+... +..+ ++ +++.+ + +.|+|
T Consensus 120 ~~~k~vlvlGa-GGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~---------~~~~--~~---~~l~~-l-~~Div 182 (282)
T 3fbt_A 120 IKNNICVVLGS-GGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGE---------FKVI--SY---DELSN-L-KGDVI 182 (282)
T ss_dssp CTTSEEEEECS-STTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTT---------SEEE--EH---HHHTT-C-CCSEE
T ss_pred ccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh---------cCcc--cH---HHHHh-c-cCCEE
Confidence 45889999996 8899999999999997 899999987665554332 1111 11 22333 3 78999
Q ss_pred EEecc
Q 023515 86 CHTAS 90 (281)
Q Consensus 86 ih~a~ 90 (281)
||+..
T Consensus 183 InaTp 187 (282)
T 3fbt_A 183 INCTP 187 (282)
T ss_dssp EECSS
T ss_pred EECCc
Confidence 99864
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00053 Score=56.95 Aligned_cols=65 Identities=15% Similarity=0.033 Sum_probs=47.0
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEe
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~ 88 (281)
+++|.|.| +|.+|..+++.|.+.|++|++.+|++++...+... ++.. ..++.++++++|+||-+
T Consensus 4 ~~~i~iiG-~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~--------g~~~-------~~~~~~~~~~~D~vi~~ 67 (301)
T 3cky_A 4 SIKIGFIG-LGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQ--------GAQA-------CENNQKVAAASDIIFTS 67 (301)
T ss_dssp CCEEEEEC-CCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTT--------TCEE-------CSSHHHHHHHCSEEEEC
T ss_pred CCEEEEEC-ccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHC--------CCee-------cCCHHHHHhCCCEEEEE
Confidence 56899999 59999999999999999999998876544332211 1221 23456667788998877
Q ss_pred c
Q 023515 89 A 89 (281)
Q Consensus 89 a 89 (281)
.
T Consensus 68 v 68 (301)
T 3cky_A 68 L 68 (301)
T ss_dssp C
T ss_pred C
Confidence 5
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 281 | ||||
| d1y1pa1 | 342 | c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo | 2e-39 | |
| d2b69a1 | 312 | c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 | 4e-26 | |
| d1r6da_ | 322 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 2e-24 | |
| d1kewa_ | 361 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 2e-22 | |
| d1db3a_ | 357 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric | 6e-21 | |
| d1e6ua_ | 315 | c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras | 1e-19 | |
| d1t2aa_ | 347 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H | 2e-18 | |
| d1rpna_ | 321 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo | 3e-17 | |
| d1oc2a_ | 346 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 1e-15 | |
| d1qyda_ | 312 | c.2.1.2 (A:) Pinoresinol-lariciresinol reductase { | 8e-15 | |
| d2q46a1 | 252 | c.2.1.2 (A:2-253) Hypothetical protein At5g02240 ( | 6e-14 | |
| d1xgka_ | 350 | c.2.1.2 (A:) Negative transcriptional regulator Nm | 7e-14 | |
| d1hdoa_ | 205 | c.2.1.2 (A:) Biliverdin IX beta reductase {Human ( | 1e-13 | |
| d1n7ha_ | 339 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cr | 1e-13 | |
| d1orra_ | 338 | c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella | 3e-13 | |
| d1qyca_ | 307 | c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta | 5e-13 | |
| d2c5aa1 | 363 | c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {T | 2e-12 | |
| d1udca_ | 338 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 2e-12 | |
| d1sb8a_ | 341 | c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase W | 3e-12 | |
| d1z45a2 | 347 | c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep | 3e-12 | |
| d1rkxa_ | 356 | c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia | 2e-10 | |
| d2a35a1 | 212 | c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pse | 1e-08 | |
| d2bkaa1 | 232 | c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {H | 1e-08 | |
| d1i24a_ | 393 | c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 | 4e-08 | |
| d1xg5a_ | 257 | c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC41 | 5e-08 | |
| d2gdza1 | 254 | c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrog | 2e-07 | |
| d1eq2a_ | 307 | c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimer | 6e-07 | |
| d1ek6a_ | 346 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 1e-06 | |
| d1xhla_ | 274 | c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorh | 2e-06 | |
| d2blla1 | 342 | c.2.1.2 (A:316-657) Polymyxin resistance protein A | 4e-06 | |
| d1xkqa_ | 272 | c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorh | 5e-06 | |
| d1vl0a_ | 281 | c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD | 8e-06 | |
| d1spxa_ | 264 | c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nemato | 9e-06 | |
| d2bgka1 | 268 | c.2.1.2 (A:11-278) Rhizome secoisolariciresinol de | 1e-05 | |
| d1yxma1 | 297 | c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA re | 1e-05 | |
| d1ooea_ | 235 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 1e-05 | |
| d1iy8a_ | 258 | c.2.1.2 (A:) Levodione reductase {Corynebacterium | 2e-05 | |
| d1yb1a_ | 244 | c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase | 2e-05 | |
| d1n2sa_ | 298 | c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reduct | 2e-05 | |
| d1cyda_ | 242 | c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus muscul | 5e-05 | |
| d1fmca_ | 255 | c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase | 6e-05 | |
| d1hxha_ | 253 | c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydroge | 9e-05 | |
| d1pr9a_ | 244 | c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapie | 1e-04 | |
| d1dhra_ | 236 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 1e-04 | |
| d1ydea1 | 250 | c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase | 1e-04 | |
| d1ae1a_ | 258 | c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu | 2e-04 | |
| d1yo6a1 | 250 | c.2.1.2 (A:1-250) Putative carbonyl reductase snif | 2e-04 | |
| d1zk4a1 | 251 | c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase | 2e-04 | |
| d2ae2a_ | 259 | c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu | 3e-04 | |
| d1bdba_ | 276 | c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehy | 4e-04 | |
| d1sbya1 | 254 | c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase | 4e-04 | |
| d1hdca_ | 254 | c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydr | 5e-04 | |
| d1oaaa_ | 259 | c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus mus | 5e-04 | |
| d2c07a1 | 251 | c.2.1.2 (A:54-304) beta-keto acyl carrier protein | 5e-04 | |
| d1h5qa_ | 260 | c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Aga | 6e-04 | |
| d1nffa_ | 244 | c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycob | 6e-04 | |
| d1ulua_ | 256 | c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermoph | 7e-04 | |
| d1k2wa_ | 256 | c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter s | 7e-04 | |
| d1q7ba_ | 243 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 9e-04 | |
| d1ja9a_ | 259 | c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reduc | 0.001 | |
| d1gz6a_ | 302 | c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase do | 0.001 | |
| d1gy8a_ | 383 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 0.001 | |
| d2d1ya1 | 248 | c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {T | 0.001 | |
| d1g0oa_ | 272 | c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase | 0.002 | |
| d1xq1a_ | 259 | c.2.1.2 (A:) Tropinone reductase {Thale cress (Ara | 0.002 | |
| d2rhca1 | 257 | c.2.1.2 (A:5-261) beta-keto acyl carrier protein r | 0.002 | |
| d1zema1 | 260 | c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconoba | 0.002 | |
| d2ew8a1 | 247 | c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenas | 0.002 | |
| d1uzma1 | 237 | c.2.1.2 (A:9-245) beta-keto acyl carrier protein r | 0.002 | |
| d1xu9a_ | 269 | c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase | 0.002 | |
| d2a4ka1 | 241 | c.2.1.2 (A:2-242) beta-keto acyl carrier protein r | 0.002 | |
| d1vl8a_ | 251 | c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga | 0.004 | |
| d1x1ta1 | 260 | c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydroge | 0.004 |
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Score = 138 bits (347), Expect = 2e-39
Identities = 74/299 (24%), Positives = 125/299 (41%), Gaps = 21/299 (7%)
Query: 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASE 60
+ + G +V VTGA+G++AS +V+ LL GY V+ + R + +
Sbjct: 3 IDNAVLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGR 62
Query: 61 RLQLFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAK 120
++L++G++D ++ G + E++ PA+ GTLN L + A
Sbjct: 63 FETAVVEDMLKQGAYDEVIKGAA--GVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAA 120
Query: 121 FPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYP----------LS 170
PS+KR VLTSS + L KP + +DE ++ + K L S
Sbjct: 121 TPSVKRFVLTSSTVSALI-PKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAAS 179
Query: 171 KTLAEDAAWKFAKEKSI--DLVTINPAMVIGPLLQPTLN--TSAAAVLSLIKGAQTYPNV 226
KT AE AAWKF E L + P IG + P +++ ++SL G +
Sbjct: 180 KTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALA 239
Query: 227 TFG---WVNVKDVANAHIQAFEVPSANGRYCL-VERVSHYSEIVNIIRELYPAFQLPEK 281
+V+ D+ H+ +P R ++ ++ R+LYP+ P
Sbjct: 240 LMPPQYYVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPAD 298
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 102 bits (255), Expect = 4e-26
Identities = 43/270 (15%), Positives = 88/270 (32%), Gaps = 24/270 (8%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69
K + +TG +G++ S L L+ G+ V K+ + E +L ++
Sbjct: 2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRN---VEHWIGHENFELINHDV 58
Query: 70 LEEGSFDSIVDGCDGVCHTASPFYHDA--KDPQVELLDPAVKGTLNVLNSCAKFPSIKRV 127
+ + + D + H ASP +P ++ L GTLN+L + R+
Sbjct: 59 V-----EPLYIEVDQIYHLASPASPPNYMYNP-IKTLKTNTIGTLNMLGLAKRVG--ARL 110
Query: 128 VLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSI 187
+L S+ + + P C Y K +AE + + K++ +
Sbjct: 111 LLASTSEVYGDPEVHPQSEDYWGHVNPIGPRAC------YDEGKRVAETMCYAYMKQEGV 164
Query: 188 DLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG-----WVNVKDVANAHIQ 242
++ GP + + + + G + V D+ N +
Sbjct: 165 EVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVA 224
Query: 243 AFEVPSANGRYCLVERVSHYSEIVNIIREL 272
++ E +I+ L
Sbjct: 225 LMNSNVSSPVNLGNPEEHTILEFAQLIKNL 254
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Score = 98.0 bits (243), Expect = 2e-24
Identities = 49/253 (19%), Positives = 80/253 (31%), Gaps = 22/253 (8%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKAS----VRDPNDPKKTRHLLALDGASERLQLFKA 67
+ VTG +G+I S V+ LL+ Y + V D R LA A RL+
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHG 62
Query: 68 NLLEEGSFDSIVDGCDGVCHTASP-FYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKR 126
++ + G + G D + H A+ + + V+GT +L + R
Sbjct: 63 DIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAG-VGR 121
Query: 127 VVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKS 186
VV S+ E+ +P Y SK ++ A + +
Sbjct: 122 VVHVSTNQVY-----GSIDSGSWTESSPLEPNSP------YAASKAGSDLVARAYHRTYG 170
Query: 187 IDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ----TYPNVTFGWVNVKDVANAHIQ 242
+D+ GP P V +L+ G WV+ D
Sbjct: 171 LDVRITRCCNNYGPYQHPE-KLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIAL 229
Query: 243 AFEVPSANGRYCL 255
A Y +
Sbjct: 230 VLAGGRAGEIYHI 242
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 92.9 bits (230), Expect = 2e-22
Identities = 41/261 (15%), Positives = 83/261 (31%), Gaps = 22/261 (8%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ +TG +G+I S +V+ ++ ++ L + S R A++ +
Sbjct: 3 ILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISE-SNRYNFEHADICD 61
Query: 72 EGSFDSIVDG--CDGVCHTASPFYHDA--KDPQVELLDPAVKGTLNVLNSCAKF------ 121
I + D V H A+ + D P ++ + GT +L K+
Sbjct: 62 SAEITRIFEQYQPDAVMHLAAESHVDRSITGP-AAFIETNIVGTYALLEVARKYWSALGE 120
Query: 122 --PSIKRVVLTSSMAAVLNTGK-PRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAA 178
+ R S+ + + V + S Y SK ++
Sbjct: 121 DKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSS--PYSASKASSDHLV 178
Query: 179 WKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ----TYPNVTFGWVNVK 234
+ + + + N + GP P +L+ ++G + W+ V+
Sbjct: 179 RAWRRTYGLPTIVTNCSNNYGPYHFPE-KLIPLVILNALEGKPLPIYGKGDQIRDWLYVE 237
Query: 235 DVANAHIQAFEVPSANGRYCL 255
D A A A Y +
Sbjct: 238 DHARALHMVVTEGKAGETYNI 258
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Score = 88.7 bits (219), Expect = 6e-21
Identities = 39/251 (15%), Positives = 70/251 (27%), Gaps = 26/251 (10%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN--DPKKTRHLL-ALDGASERLQLFK 66
KV +TG +G S+L + LL +GY V R + + ++ H+ + + L
Sbjct: 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHY 61
Query: 67 ANLLEEGSFDSIVDGCD---GVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKF-- 121
+L + + I+ A + + D GTL +L +
Sbjct: 62 GDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGL 121
Query: 122 PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKF 181
R S+ G ++ ET P Y ++K A +
Sbjct: 122 EKKTRFYQASTSELY---GLV--QEIPQKETTPFYPRSP------YAVAKLYAYWITVNY 170
Query: 182 AKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG-------WVNVK 234
+ + P T T + G W + K
Sbjct: 171 RESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAK 230
Query: 235 DVANAHIQAFE 245
D +
Sbjct: 231 DYVKMQWMMLQ 241
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Score = 84.5 bits (208), Expect = 1e-19
Identities = 27/195 (13%), Positives = 61/195 (31%), Gaps = 33/195 (16%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69
+ V + G G + S + + L RG L L E NL
Sbjct: 3 QRVFIAGHRGMVGSAIRRQLEQRGDVE----------------LVLRTRDE------LNL 40
Query: 70 LEEGSFDSIV--DGCDGVCHTASPFYHDA--KDPQVELLDPAVKGTLNVLNSCAKFPSIK 125
L+ + + D V A+ + + + N++++ + +
Sbjct: 41 LDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQND-VN 99
Query: 126 RVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK 185
+++ S P+ + E+ + +E Y ++K + ++
Sbjct: 100 KLLFLGSSCIY-----PKLAKQPMAESELLQGTLEPTNE-PYAIAKIAGIKLCESYNRQY 153
Query: 186 SIDLVTINPAMVIGP 200
D ++ P + GP
Sbjct: 154 GRDYRSVMPTNLYGP 168
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.6 bits (200), Expect = 2e-18
Identities = 42/261 (16%), Positives = 73/261 (27%), Gaps = 27/261 (10%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN--DPKKTRHLLALDGA--SERLQLF 65
V +TG +G S+L + LL +GY V VR + + + HL A ++L
Sbjct: 2 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLH 61
Query: 66 KANLLEEGSFDSIVDGCDGVCH---TASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKF- 121
+L + I++ A + D D GTL +L++
Sbjct: 62 YGDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCG 121
Query: 122 -PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWK 180
+ + S+ ++ ET P Y +K A
Sbjct: 122 LINSVKFYQASTSELYGK-----VQEIPQKETTPFYPRSP------YGAAKLYAYWIVVN 170
Query: 181 FAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG-------WVNV 233
F + ++ V P T + + G W +
Sbjct: 171 FREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHA 230
Query: 234 KDVANAHIQAFEVPSANGRYC 254
KD A +
Sbjct: 231 KDYVEAMWLMLQNDEPEDFVI 251
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 78.1 bits (191), Expect = 3e-17
Identities = 42/255 (16%), Positives = 70/255 (27%), Gaps = 23/255 (9%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69
+ VTG +G ++L KLLL +GY V V + + R L G +Q ++
Sbjct: 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWR--LRELGIEGDIQYEDGDM 58
Query: 70 LEEGSFDSIVDGCD---GVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKR 126
+ S V A F + + V G ++L + +F R
Sbjct: 59 ADACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETR 118
Query: 127 VVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKS 186
S+ DE Y ++K + +
Sbjct: 119 FYQASTSEM-----FGLIQAERQDENT------PFYPRSPYGVAKLYGHWITVNYRESFG 167
Query: 187 IDLVTINPAMVIGPLLQPTLNTS--AAAVLSLIKGAQTYPNVTFG-----WVNVKDVANA 239
+ + PL T AV + G Q + W D A
Sbjct: 168 LHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEA 227
Query: 240 HIQAFEVPSANGRYC 254
+ A+
Sbjct: 228 MWLMLQQDKADDYVV 242
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 73.5 bits (179), Expect = 1e-15
Identities = 36/250 (14%), Positives = 73/250 (29%), Gaps = 8/250 (3%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69
K + VTG +G+I S V + + V +V D + L +R++L ++
Sbjct: 3 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLE-AILGDRVELVVGDI 61
Query: 70 LEEGSFDSIVDGCDGVCHTASPFYHDA--KDPQVELLDPAVKGTLNVLNSCAKFPSIKRV 127
+ D + D + H A+ ++D DP + GT +L + + I+
Sbjct: 62 ADAELVDKLAAKADAIVHYAAESHNDNSLNDPS-PFIHTNFIGTYTLLEAA-RKYDIRFH 119
Query: 128 VLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSI 187
+++ + P E Y +K ++ + + +
Sbjct: 120 HVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSFGV 179
Query: 188 DLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY---PNVTFGWVNVKDVANAHIQAF 244
N + GP L W++ D +
Sbjct: 180 KATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAIL 239
Query: 245 EVPSANGRYC 254
Y
Sbjct: 240 TKGRMGETYL 249
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Score = 71.0 bits (172), Expect = 8e-15
Identities = 37/265 (13%), Positives = 69/265 (26%), Gaps = 36/265 (13%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
V + G +GYI +V +S G+ R + + L +L +A+L +
Sbjct: 6 VLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDD 65
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131
+ D V + + L A + +IKR + +
Sbjct: 66 HQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEA----------IKEAGNIKRFLPSE 115
Query: 132 SMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVT 191
E Q + K + + SI
Sbjct: 116 FGM------------------DPDIMEHALQPGSITFIDKR----KVRRAIEAASIPYTY 153
Query: 192 INPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT-FGWVNVKDVANAHIQAFEVPSAN 250
++ M G + K WV+ DV I++ + P
Sbjct: 154 VSSNMFAGYFAGSLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQTL 213
Query: 251 GR---YCLVERVSHYSEIVNIIREL 272
+ + E++ I L
Sbjct: 214 NKTMYIRPPMNILSQKEVIQIWERL 238
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 67.5 bits (163), Expect = 6e-14
Identities = 36/245 (14%), Positives = 60/245 (24%), Gaps = 27/245 (11%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
V VTGASG + K L + K VR +K +F
Sbjct: 4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI---------GGEADVFIG 54
Query: 68 NLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRV 127
++ + S + G D + S DP G + ++P
Sbjct: 55 DITDADSINPAFQGIDALVILTSAVPKMKPG-----FDPTKGGRPEFIFEDGQYPEQVDW 109
Query: 128 VLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSI 187
+ + + VV + + L A ++ +
Sbjct: 110 IGQKNQIDAAKVAGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWK---RKAEQYLADSGT 166
Query: 188 DLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP 247
I ++ L+ V DVA IQA
Sbjct: 167 PYTIIRAGGLLDKE--------GGVRELLVGKDDELLQTDTKTVPRADVAEVCIQALLFE 218
Query: 248 SANGR 252
A +
Sbjct: 219 EAKNK 223
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Score = 68.5 bits (166), Expect = 7e-14
Identities = 33/269 (12%), Positives = 66/269 (24%), Gaps = 47/269 (17%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69
K + V GA+G + L+++ + G+ V+A V L A+ LF+ L
Sbjct: 4 KTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIA-EELQAIPNV----TLFQGPL 58
Query: 70 LEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVL 129
L + + + + + L A AK + +
Sbjct: 59 LNNVPLMDTLFEGAHLAFINTTSQAGDEIAIGKDLADA-----------AKRAGTIQHYI 107
Query: 130 TSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDL 189
SSM G W + + + ++ +
Sbjct: 108 YSSMPDHSLYGP------------------------WPAVPMWAPKFTVENYVRQLGLPS 143
Query: 190 VTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVN----VKDVANAHIQAFE 245
+ + ++ P + DV A +Q F+
Sbjct: 144 TFVYAGIYNNNFTSLPYPLFQMELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFK 203
Query: 246 VPS---ANGRYCLVERVSHYSEIVNIIRE 271
R L ++
Sbjct: 204 DGPQKWNGHRIALTFETLSPVQVCAAFSR 232
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.2 bits (160), Expect = 1e-13
Identities = 33/245 (13%), Positives = 64/245 (26%), Gaps = 49/245 (20%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
A K + + GA+G + + GY V VRD + +
Sbjct: 2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGP--------RPAHVVVG 53
Query: 68 NLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRV 127
++L+ D V G D V + +G N++ + K + +V
Sbjct: 54 DVLQAADVDKTVAGQDAVIVLLGT------RNDLSPTTVMSEGARNIVAAM-KAHGVDKV 106
Query: 128 VLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSI 187
V +S DP + T K +E +
Sbjct: 107 VACTSA------------------FLLWDPT----KVPPRLQAVTDDHIRMHKVLRESGL 144
Query: 188 DLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP 247
V + P + L + ++ D+ + ++
Sbjct: 145 KYVAVMPPHIGDQPLTGAYTVTL------------DGRGPSRVISKHDLGHFMLRCLTTD 192
Query: 248 SANGR 252
+G
Sbjct: 193 EYDGH 197
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 67.8 bits (164), Expect = 1e-13
Identities = 40/263 (15%), Positives = 73/263 (27%), Gaps = 30/263 (11%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN--DPKKTRHLLAL--DGASERLQLF 65
K+ +TG +G S+L + LL +GY V +R + + ++ H+ + ++L
Sbjct: 2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLH 61
Query: 66 KANLLEEGSFDSIVD--GCDGVCHTASPFYHD--AKDPQVELLDP---AVKGTLNVLNSC 118
A+L + S +D D V + A+ + + P A++ V +
Sbjct: 62 YADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHT 121
Query: 119 AKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAA 178
+ S +T P ET P Y SK A
Sbjct: 122 IDSGRTVKYYQAGSSEMFGSTPPP------QSETTPFHP------RSPYAASKCAAHWYT 169
Query: 179 WKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG-------WV 231
+ + + P T + G W
Sbjct: 170 VNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWG 229
Query: 232 NVKDVANAHIQAFEVPSANGRYC 254
D A + +
Sbjct: 230 FAGDYVEAMWLMLQQEKPDDYVV 252
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Score = 66.7 bits (161), Expect = 3e-13
Identities = 27/161 (16%), Positives = 55/161 (34%), Gaps = 7/161 (4%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ +TG G++ S L LS+G + V D K L + + ++
Sbjct: 3 LLITGGCGFLGSNLASFALSQGIDLI--VFDNLSRKGATDNLHWLSSLGNFEFVHGDIRN 60
Query: 72 EGSFDSIVDGC--DGVCHTASPFYHDA--KDPQVELLDPAVKGTLNVLNSCAKFPSIKRV 127
+ ++ D H A +P + V GTLN+L + ++ S +
Sbjct: 61 KNDVTRLITKYMPDSCFHLAGQVAMTTSIDNP-CMDFEINVGGTLNLLEAVRQYNSNCNI 119
Query: 128 VLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYP 168
+ +S+ + + + + T P +S
Sbjct: 120 IYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDF 160
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Score = 65.6 bits (158), Expect = 5e-13
Identities = 34/268 (12%), Positives = 71/268 (26%), Gaps = 43/268 (16%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDG-ASERLQLFKAN 68
+ + GA+GYI + K L G+ VR+ + L+ + + +
Sbjct: 4 SRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGS 63
Query: 69 LLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVV 128
+ + S V D V T +++ + K +
Sbjct: 64 IDDHASLVEAVKNVDVVISTVGSLQIESQVN---------------IIKAIKEVGTVKRF 108
Query: 129 LTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSID 188
S VD +P + + + I
Sbjct: 109 FPSEFG------------NDVDNVHAVEPAKSVFEVKAKV----------RRAIEAEGIP 146
Query: 189 LVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS 248
++ G L+ A N +V +D+ I+A + P
Sbjct: 147 YTYVSSNCFAGYFLRSLAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPR 206
Query: 249 ANGRYCLV----ERVSHYSEIVNIIREL 272
+ + +S +E+V + +
Sbjct: 207 TLNKTLYLRLPANTLS-LNELVALWEKK 233
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 363 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 64.6 bits (156), Expect = 2e-12
Identities = 43/273 (15%), Positives = 87/273 (31%), Gaps = 27/273 (9%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ +TGA G+IAS + + L G+ V AS D KK H+ E +L
Sbjct: 18 ISITGAGGFIASHIARRLKHEGHYVIAS-----DWKKNEHMTEDMFCDE---FHLVDLRV 69
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPA--VKGTLNVLNSCAKFPSIKRVVL 129
+ + +G D V + A+ + + N++ + IKR
Sbjct: 70 MENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARING-IKRFFY 128
Query: 130 TSSMAAVLNTGKPRTPDVVV--DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSI 187
SS + T +V + + W ++P+ + L K E+ + K+ I
Sbjct: 129 ASSACIYPEFKQLETTNVSLKESDAWPAEPQDA------FGLEKLATEELCKHYNKDFGI 182
Query: 188 DLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP--------NVTFGWVNVKDVANA 239
+ + GP A K + T + + +
Sbjct: 183 ECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEG 242
Query: 240 HIQAFEVPSANGRYCLVERVSHYSEIVNIIREL 272
++ + + + +E+ ++
Sbjct: 243 VLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSF 275
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Score = 63.8 bits (154), Expect = 2e-12
Identities = 48/263 (18%), Positives = 84/263 (31%), Gaps = 10/263 (3%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
V VTG SGYI S LL G+ V N + ++ G + + ++
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRN 61
Query: 72 EGSFDSIVD--GCDGVCHTASPFYHDA--KDPQVELLDPAVKGTLNVLNSCAKFPSIKRV 127
E I+ D V H A + P +E D V GTL ++++ ++K
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQKP-LEYYDNNVNGTLRLISAMRAA-NVKNF 119
Query: 128 VLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSI 187
+ +SS + K + T S K A W A +
Sbjct: 120 IFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKA-QPDWSIALLRYF 178
Query: 188 DLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANA--HIQAFE 245
+ V +P+ +G Q N + + G + + +D +I +
Sbjct: 179 NPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMD 238
Query: 246 VPSANGRYCLVERVSHYSEIVNI 268
+ + I N+
Sbjct: 239 LADGHVVAMEKLANKPGVHIYNL 261
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Score = 63.8 bits (154), Expect = 3e-12
Identities = 49/276 (17%), Positives = 88/276 (31%), Gaps = 27/276 (9%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKA----SVRDPNDPKKTRHLLALDGAS--ERLQ 63
KV +TG +G+I S L++ LL V + + + R L++ S + +Q
Sbjct: 17 KVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQ 76
Query: 64 LFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS 123
NL + + + VD S DP + G LN+L +
Sbjct: 77 GDIRNLDDCNNACAGVDYVLHQAALGSVPRSI-NDPITS-NATNIDGFLNMLIAARDAKV 134
Query: 124 IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAK 183
SS + G P E P Y ++K + E A F++
Sbjct: 135 QSFTYAASSSTYGDHPGLP------KVEDTIGKPLSP------YAVTKYVNELYADVFSR 182
Query: 184 EKSIDLVTINPAMVIGPLLQPTLNTSA---AAVLSLIKGAQTY----PNVTFGWVNVKDV 236
+ + V G P +A S+I+G Y + + +++
Sbjct: 183 CYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENT 242
Query: 237 ANAHIQAFEVPSANGRYCLVERVSHYSEIVNIIREL 272
A++ A V + + + L
Sbjct: 243 VQANLLAATAGLDARNQVYNIAVGGRTSLNQLFFAL 278
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 63.9 bits (154), Expect = 3e-12
Identities = 41/271 (15%), Positives = 83/271 (30%), Gaps = 14/271 (5%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69
K+V VTG +GYI S V L+ GY + N + L + + ++ +L
Sbjct: 2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVL-TKHHIPFYEVDL 60
Query: 70 LEEGSFDSIVD--GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRV 127
+ + + D V H A VL + ++ +
Sbjct: 61 CDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKF 120
Query: 128 VLTSSMAAVLNTGKPRTPDVVVDETWFSDPE----VCKQSELWYPLSKTLAEDAAWKFAK 183
V +SS + + + + E P K + ++ +WKFA
Sbjct: 121 VFSSSATVYGDATRFPN-MIPIPEECPLGPTNPYGHTKYAIENILNDLYNSDKKSWKFAI 179
Query: 184 EKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV------TFGWVNVKDVA 237
+ + + +P+ +IG N + + G + + + ++D
Sbjct: 180 LRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRDYI 239
Query: 238 NAHIQAFEVPSANGRYCLVERVSHYSEIVNI 268
+ A +A N+
Sbjct: 240 HVVDLAKGHIAALQYLEAYNENEGLCREWNL 270
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Score = 58.3 bits (139), Expect = 2e-10
Identities = 34/200 (17%), Positives = 57/200 (28%), Gaps = 7/200 (3%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKAN 68
GK V VTG +G+ WL L + G TVK L ++ +Q +
Sbjct: 8 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP---TVPSLFETARVADGMQSEIGD 64
Query: 69 LLEEGS---FDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIK 125
+ ++ A P + VE V GT+ +L + +K
Sbjct: 65 IRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVK 124
Query: 126 RVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK 185
VV + + + + DP + S +
Sbjct: 125 AVV-NITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQH 183
Query: 186 SIDLVTINPAMVIGPLLQPT 205
+ T+ VIG
Sbjct: 184 GTAVATVRAGNVIGGGDWAL 203
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Score = 51.7 bits (122), Expect = 1e-08
Identities = 35/261 (13%), Positives = 65/261 (24%), Gaps = 53/261 (20%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69
K V + GA+G L+ +LS K +
Sbjct: 3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE--------------------- 41
Query: 70 LEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVL 129
H + LD ++ L + K +
Sbjct: 42 -----------------HPRLDNPVGPLAELLPQLDGSIDTAFCCLGTTIKEAGSEEAFR 84
Query: 130 TSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDL 189
L GK S +S ++Y K E A + +
Sbjct: 85 AVDFDLPLAVGKRALEMGARHYLVVSALGADAKSSIFYNRVKGELEQALQEQGWPQLT-- 142
Query: 190 VTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPSA 249
P+++ GP + L AA ++ I + + + D+A A +
Sbjct: 143 -IARPSLLFGPREEFRLAEILAAPIARILPGKYHG------IEACDLARALWRLALEEGK 195
Query: 250 NGRYCLVERVSHYSEIVNIIR 270
R+ E+ + +
Sbjct: 196 GVRFV------ESDELRKLGK 210
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.7 bits (122), Expect = 1e-08
Identities = 31/261 (11%), Positives = 56/261 (21%), Gaps = 44/261 (16%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69
K V + GASG L+K +L +G K ++ +
Sbjct: 15 KSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDY 74
Query: 70 LEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVL 129
+ C G + +
Sbjct: 75 ASAFQGHDVGFCCLGTTRGKAGAEGFVRVD------------------------------ 104
Query: 130 TSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDL 189
VL + + S K S Y K E + K
Sbjct: 105 ---RDYVLKSAELAKAGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEEL---KFDRY 158
Query: 190 VTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPSA 249
P +++ + ++ G+ + V V V A + P
Sbjct: 159 SVFRPGVLLCDRQESRPGE---WLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRD 215
Query: 250 NGRYCLVERVSHYSEIVNIIR 270
L I ++ +
Sbjct: 216 KQMELL-----ENKAIHDLGK 231
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 51.5 bits (121), Expect = 4e-08
Identities = 35/215 (16%), Positives = 56/215 (26%), Gaps = 23/215 (10%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGYTV---------------KASVRDPNDPKKTRHLL 53
G V V G GY L + Y V P R
Sbjct: 1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISR 60
Query: 54 ALDGASERLQLFKANLLEEGSFDSIVD------GCDGVCHTASPFYHDAKDPQVELLDPA 107
+ ++L+ ++ + ++P+ + V
Sbjct: 61 WKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNN 120
Query: 108 VKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFS--DPEVCKQSEL 165
V GTLNVL + +F +V +M + KQ+
Sbjct: 121 VIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASS 180
Query: 166 WYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGP 200
+Y LSK K I +N +V G
Sbjct: 181 FYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGV 215
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.3 bits (120), Expect = 5e-08
Identities = 24/153 (15%), Positives = 51/153 (33%), Gaps = 21/153 (13%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKAN 68
++ VTGASG I + + + L+ +G V R + ++ G L ++ +
Sbjct: 10 DRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCD 69
Query: 69 LLEEGSFDSIVD-------GCDGVCHTA-----SPFYHDAKDPQVELLDPAVKGTLNVLN 116
L E S+ G D + A + ++ + V +
Sbjct: 70 LSNEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLAL--SIC 127
Query: 117 SCAKFPSIK-------RVVLTSSMAAVLNTGKP 142
+ + S+K ++ +SM+
Sbjct: 128 TREAYQSMKERNVDDGHIININSMSGHRVLPLS 160
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.5 bits (115), Expect = 2e-07
Identities = 36/241 (14%), Positives = 73/241 (30%), Gaps = 27/241 (11%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKAN 68
GKV VTGA+ I + LL +G V + + + L ++ + +
Sbjct: 3 GKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCD 62
Query: 69 LLEEGSFDSIVD-------GCDGVCHTASPFYHDAKDPQVEL-LDPAVKGTLNVLNSCAK 120
+ ++ D + + A + +++ L + GT L+ +K
Sbjct: 63 VADQQQLRDTFRKVVDHFGRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSK 122
Query: 121 FPS--IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAA 178
++ SS+A + + P C +++ A A
Sbjct: 123 QNGGEGGIIINMSSLAGL--MPVAQQPV------------YCASKHGIVGFTRSAALAAN 168
Query: 179 WKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVAN 238
+ L I P V +L+ K +G ++ +AN
Sbjct: 169 L---MNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMIKYYGILDPPLIAN 225
Query: 239 A 239
Sbjct: 226 G 226
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Score = 47.7 bits (111), Expect = 6e-07
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALD 56
+ VTG +G+I S +VK L +G T V + D K +L+ L+
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLN 46
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.0 bits (110), Expect = 1e-06
Identities = 34/202 (16%), Positives = 65/202 (32%), Gaps = 24/202 (11%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTV-------KASVRDPNDPKKTRHLLALDGASERL 62
+ V VTG +GYI S V LL GY A + P+ R + L G +
Sbjct: 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTG--RSV 60
Query: 63 QLFKANLLEEGSFDSIVDGCDGVCHT---ASPFYHDAKDPQVELLDPAVKGTLNVLNSCA 119
+ + ++L++G+ + + ++ ++ + GT+ +L
Sbjct: 61 EFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMK 120
Query: 120 KFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAW 179
+ ++ SS A V + D ++P Y SK E+
Sbjct: 121 AHG--VKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNP---------YGKSKFFIEEMIR 169
Query: 180 KFAKEKSIDLVTI-NPAMVIGP 200
+ + G
Sbjct: 170 DLCQADKTWNAVLLRYFNPTGA 191
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Score = 45.8 bits (108), Expect = 2e-06
Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 8/96 (8%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKT-RHLLALDGASERLQLFK 66
+GK V +TG+S I + G V + R+ + ++T + +L +E++
Sbjct: 3 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVV 62
Query: 67 ANLLEEGSFDSIVD-------GCDGVCHTASPFYHD 95
A++ E D I++ D + + A D
Sbjct: 63 ADVTEASGQDDIINTTLAKFGKIDILVNNAGANLAD 98
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Score = 44.9 bits (104), Expect = 4e-06
Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 7/84 (8%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
V + G +G+I + L + LL + + +D L + ++
Sbjct: 3 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAIS--RFL----NHPHFHFVEGDISI 56
Query: 72 EGSF-DSIVDGCDGVCHTASPFYH 94
+ + V CD V +
Sbjct: 57 HSEWIEYHVKKCDVVLPLVAIATP 80
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Score = 44.6 bits (105), Expect = 5e-06
Identities = 42/242 (17%), Positives = 75/242 (30%), Gaps = 18/242 (7%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASE-RLQLFK 66
+ K V +TG+S I L G V + R ++TR ++ G SE ++
Sbjct: 4 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVV 63
Query: 67 ANLLEEGSFDSIVD-------GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCA 119
A++ E D I++ D + + A DA + LN A
Sbjct: 64 ADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQA 123
Query: 120 KFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYP-LSKTLAEDAA 178
K+V +V D ++ +++ A D A
Sbjct: 124 VIEMTKKVK---PHLVASKGEIVNVSSIVAGPQAQPDFLYYAIAKAALDQYTRSTAIDLA 180
Query: 179 WKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG-WVNVKDVA 237
+ I + +++P MV A+ A + G + +A
Sbjct: 181 -----KFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKECIPIGAAGKPEHIA 235
Query: 238 NA 239
N
Sbjct: 236 NI 237
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Score = 44.0 bits (102), Expect = 8e-06
Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVR---DPNDPKKTRHLLA 54
+ +TGA+G + + K L + V + D +
Sbjct: 4 ILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDITNVLAVNKFFN 49
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.8 bits (103), Expect = 9e-06
Identities = 41/256 (16%), Positives = 79/256 (30%), Gaps = 46/256 (17%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTR-HLLALDGASERLQLFK 66
A KV +TG+S I L G V + R ++TR +LA + + +
Sbjct: 4 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVV 63
Query: 67 ANLLEEGSFDSIVD-------GCDGVCHTASPFYHDAKDPQVELLDPA---------VKG 110
A++ + D I+ D + + A D++ ++
Sbjct: 64 ADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRS 123
Query: 111 TLNVLNSCAKFPSIKR--VVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYP 168
+ + S + +V SS+A+ L+ P P +Y
Sbjct: 124 VIALTKKAVPHLSSTKGEIVNISSIASGLH-ATPDFP--------------------YYS 162
Query: 169 LSK----TLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP 224
++K + A + I + +I+P +V + A
Sbjct: 163 IAKAAIDQYTRNTAIDLIQHG-IRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKE 221
Query: 225 NVTFG-WVNVKDVANA 239
V G +D+A
Sbjct: 222 CVPAGVMGQPQDIAEV 237
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Score = 43.5 bits (102), Expect = 1e-05
Identities = 38/246 (15%), Positives = 66/246 (26%), Gaps = 35/246 (14%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQ---- 63
KV +TG +G I KL + G V + + +K + + +
Sbjct: 5 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVT 64
Query: 64 -------LFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLN 116
L + + G D + + T + ++D V G V
Sbjct: 65 KDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLV-- 122
Query: 117 SCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAED 176
P +V S + Y +K
Sbjct: 123 ----------------AKHAARVMIPAKKGSIVFTASISSFTAGEGVSHVYTATKHAVLG 166
Query: 177 AAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNV 233
E I + ++P +V PLL ++ V L A +
Sbjct: 167 LTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAANLKG---TLLRA 223
Query: 234 KDVANA 239
+DVA+A
Sbjct: 224 EDVADA 229
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.5 bits (102), Expect = 1e-05
Identities = 40/247 (16%), Positives = 74/247 (29%), Gaps = 36/247 (14%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASE---RLQL 64
G+V VTG + I +VK LL G V + R K L + R+
Sbjct: 11 QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIP 70
Query: 65 FKANLLEEGSFDSIVD------GCDGVCH------TASPFYHDAKDPQVELLDPAVKGTL 112
+ N+ E +++V G SP H + +L+ + GT
Sbjct: 71 IQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTF 130
Query: 113 NVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKT 172
+ + + ++ G P + Y L+K+
Sbjct: 131 YMCKAVYSSWMKEHGGSIVNIIVPTKAGFP----------LAVHSGAARAG--VYNLTKS 178
Query: 173 LAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVN 232
LA + A I + + P ++ + + Q P G
Sbjct: 179 LALEWA-----CSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGS--FQKIPAKRIG--V 229
Query: 233 VKDVANA 239
++V++
Sbjct: 230 PEEVSSV 236
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.3 bits (101), Expect = 1e-05
Identities = 23/134 (17%), Positives = 48/134 (35%), Gaps = 5/134 (3%)
Query: 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGAS----ERL 62
++GKV+ V G G + S +++ GYTV ND + L+ + + +
Sbjct: 1 SSGKVI-VYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILVDGNKNWTEQEQSI 59
Query: 63 QLFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFP 122
A+ L+ D + G ++ K+ + + + +
Sbjct: 60 LEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLK 119
Query: 123 SIKRVVLTSSMAAV 136
+ LT + AA+
Sbjct: 120 PGGLLQLTGAAAAM 133
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Score = 42.8 bits (100), Expect = 2e-05
Identities = 12/96 (12%), Positives = 28/96 (29%), Gaps = 7/96 (7%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
+VV +TG + L + G + + ++ + + A
Sbjct: 3 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVA 62
Query: 68 NLLEEGSFDSIVD-------GCDGVCHTASPFYHDA 96
++ +E ++ V DG + A
Sbjct: 63 DVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQN 98
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (100), Expect = 2e-05
Identities = 20/143 (13%), Positives = 40/143 (27%), Gaps = 17/143 (11%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
G++V +TGA I + + + ++T G ++ F
Sbjct: 6 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAA--KCKGLGAKVHTFVV 63
Query: 68 NLLEEGSFDSIVD-------GCDGVCHTASPFY----HDAKDPQVE-LLDPAVKGTLNVL 115
+ S + + A Y +DPQ+E + V
Sbjct: 64 DCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTT 123
Query: 116 NSCAKFPSIK---RVVLTSSMAA 135
+ + +V +S A
Sbjct: 124 KAFLPAMTKNNHGHIVTVASAAG 146
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Score = 42.6 bits (98), Expect = 2e-05
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVR------DPNDPKKTRHLLA 54
+ + G +G + L + L G + V D ++PK +
Sbjct: 3 ILLFGKTGQVGWELQRSLAPVGNLIALDVHSKEFCGDFSNPKGVAETVR 51
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 41.5 bits (97), Expect = 5e-05
Identities = 38/241 (15%), Positives = 76/241 (31%), Gaps = 37/241 (15%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
+G VTGA I VK L + G V A R +D L++L ++
Sbjct: 4 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSD------LVSLAKECPGIEPVCV 57
Query: 68 NLLEEGSFDSIVD---GCDGVCHTA-----SPFYHDAKDPQVELLDPAVKGTLNVLNSCA 119
+L + + + + D + + A PF K+ ++ V A
Sbjct: 58 DLGDWDATEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVA 117
Query: 120 KFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAW 179
+ + V + + + + T + L+K +A +
Sbjct: 118 RDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGA----------MTMLTKAMAMELG- 166
Query: 180 KFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG-WVNVKDVAN 238
I + ++NP +V+ + + A + + V+DV N
Sbjct: 167 ----PHKIRVNSVNPTVVLTDMGKKVSADPEFA-------RKLKERHPLRKFAEVEDVVN 215
Query: 239 A 239
+
Sbjct: 216 S 216
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 41.2 bits (96), Expect = 6e-05
Identities = 31/232 (13%), Positives = 64/232 (27%), Gaps = 14/232 (6%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
GK +TGA I + + G +V S + + + G + +
Sbjct: 10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG--QAFACRC 67
Query: 68 NLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRV 127
++ E ++ D ++A + D +
Sbjct: 68 DITSEQELSALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQ 127
Query: 128 VLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSI 187
++ M + + + L + +A D EK+I
Sbjct: 128 LVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLG-----EKNI 182
Query: 188 DLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANA 239
+ I P ++ L+ + + Q P G +D+ANA
Sbjct: 183 RVNGIAPGAILTDALKSVITPEIEQKM-----LQHTPIRRLG--QPQDIANA 227
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Score = 40.7 bits (95), Expect = 9e-05
Identities = 32/247 (12%), Positives = 72/247 (29%), Gaps = 41/247 (16%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
GKV VTG + + +VKLLL G V S + ++ L ER +
Sbjct: 5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL-----GERSMFVRH 59
Query: 68 NLLEEGSFDSIVD-------GCDGVCHTA-----SPFYHDAKDPQVELLDPAVKGTLNVL 115
++ E + ++ + + + A + LL +
Sbjct: 60 DVSSEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGC 119
Query: 116 NSCAKFPSIK--RVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTL 173
++ +S+++ + + L++
Sbjct: 120 QQGIAAMKETGGSIINMASVSSW--LPIEQYAGYSASKAA------------VSALTRAA 165
Query: 174 AEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG-WVN 232
A + +I + +I+P + P++Q +L + + G
Sbjct: 166 ALSCRK---QGYAIRVNSIHPDGIYTPMMQASLPKGVSKEM----VLHDPKLNRAGRAYM 218
Query: 233 VKDVANA 239
+ +A
Sbjct: 219 PERIAQL 225
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (93), Expect = 1e-04
Identities = 40/240 (16%), Positives = 73/240 (30%), Gaps = 35/240 (14%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
AG+ V VTGA I V+ L + G V A R D L +L ++
Sbjct: 6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQAD------LDSLVRECPGIEPVCV 59
Query: 68 NLLEEGSFDSIVD---GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSI 124
+L + + + + D + + A + +N A
Sbjct: 60 DLGDWEATERALGSVGPVDLLVNN----AAVALLQPFLEVTKEAFDRSFEVNLRAVIQVS 115
Query: 125 KRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSK----TLAEDAAWK 180
+ P +V+ + + + Y +K L + A +
Sbjct: 116 Q--------IVARGLIARGVPGAIVNVSSQC-SQRAVTNHSVYCSTKGALDMLTKVMALE 166
Query: 181 FAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG-WVNVKDVANA 239
I + +NP +V+ + Q T + A + G + V+ V NA
Sbjct: 167 LGP-HKIRVNAVNPTVVMTSMGQATWSDPHKA-------KTMLNRIPLGKFAEVEHVVNA 218
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 236 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.8 bits (92), Expect = 1e-04
Identities = 19/132 (14%), Positives = 45/132 (34%), Gaps = 4/132 (3%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGAS----ERLQL 64
+ V V G G + S V+ +R + V + N+ ++ + + +++
Sbjct: 2 ARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVIVKMTDSFTEQADQVTA 61
Query: 65 FKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSI 124
LL + D+I+ G + K+ + T++ +
Sbjct: 62 EVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEG 121
Query: 125 KRVVLTSSMAAV 136
+ L + AA+
Sbjct: 122 GLLTLAGAKAAL 133
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.9 bits (93), Expect = 1e-04
Identities = 44/242 (18%), Positives = 79/242 (32%), Gaps = 32/242 (13%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTR------HLLALDGASER 61
AGKVV VTG I + +V+ ++ G V +D + + + D E
Sbjct: 5 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFILCDVTQED 64
Query: 62 --LQLFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCA 119
L + G D +V+ P A+ + +LL+ + GT +
Sbjct: 65 DVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFR-QLLELNLLGTYTLTKLAL 123
Query: 120 KFPSIK--RVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDA 177
+ V+ SS+ + P V + + ++K LA D
Sbjct: 124 PYLRKSQGNVINISSLVG-------------AIGQAQAVPYVATKGAVTA-MTKALALDE 169
Query: 178 AWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVA 237
+ + + I+P + PL + S+ +G P G +V
Sbjct: 170 S-----PYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQPLGRMG--QPAEVG 222
Query: 238 NA 239
A
Sbjct: 223 AA 224
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Score = 39.7 bits (92), Expect = 2e-04
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 2/73 (2%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
G VTG S I +V+ L G V R+ + + + G + +
Sbjct: 5 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNV--EGSVC 62
Query: 68 NLLEEGSFDSIVD 80
+LL D ++
Sbjct: 63 DLLSRTERDKLMQ 75
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Score = 39.5 bits (91), Expect = 2e-04
Identities = 37/241 (15%), Positives = 67/241 (27%), Gaps = 22/241 (9%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVK--ASVRDPNDPKKTR-------HLLALD-- 56
+ V VTGA+ I LV+ L+ A+ RD + + H+L L
Sbjct: 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVT 61
Query: 57 --GASERLQLFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNV 114
+ + ++ ++ GV + + E LD + +
Sbjct: 62 CDKSLDTFVSKVGEIVGSDGLS-LLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLL 120
Query: 115 LNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLA 174
+ +V + T + L Y +SK
Sbjct: 121 TQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQFPV-LAYRMSKAAI 179
Query: 175 EDAAWKFAKE---KSIDLVTINPAMVIGPLLQP----TLNTSAAAVLSLIKGAQTYPNVT 227
A + ++ +V P V L T+ S A ++S N
Sbjct: 180 NMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGKNAALTVEQSTAELISSFNKLDNSHNGR 239
Query: 228 F 228
F
Sbjct: 240 F 240
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Score = 39.2 bits (91), Expect = 2e-04
Identities = 16/94 (17%), Positives = 35/94 (37%), Gaps = 10/94 (10%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
GKV +TG + I + + G V + R + +K + G +++Q F+
Sbjct: 5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSV---GTPDQIQFFQH 61
Query: 68 NLLEEGSFDSIVD-------GCDGVCHTASPFYH 94
+ +E + + D + + A +
Sbjct: 62 DSSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVN 95
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Score = 38.8 bits (90), Expect = 3e-04
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 2/73 (2%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
G VTG S I +V+ L S G +V R+ + G +++
Sbjct: 7 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGF--KVEASVC 64
Query: 68 NLLEEGSFDSIVD 80
+L +++
Sbjct: 65 DLSSRSERQELMN 77
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Score = 38.9 bits (90), Expect = 4e-04
Identities = 37/249 (14%), Positives = 74/249 (29%), Gaps = 38/249 (15%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTR-------HLLALDGASE 60
G+ V +TG + + LV ++ G V + + + D S
Sbjct: 4 KGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHGDNVLGIVGDVRSL 63
Query: 61 --RLQLFKANLLEEGSFDSIVDGCDGVCHTASPF----YHDAKDPQVELLDPAVKGTLNV 114
+ Q + G D+++ G+ ++ E+ VKG ++
Sbjct: 64 EDQKQAASRCVARFGKIDTLIP-NAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHA 122
Query: 115 LNSCAKF--PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKT 172
+ +C S V+ T S A P + L +
Sbjct: 123 VKACLPALVASRGNVIFTISNAGF--YPNGGGPLYTAAKHAIV------------GLVRE 168
Query: 173 LAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT-FG-W 230
LA + A + + + + L P+ + +S + A +V G
Sbjct: 169 LAFELAPY------VRVNGVGSGGINSDLRGPSSLGMGSKAISTVPLADMLKSVLPIGRM 222
Query: 231 VNVKDVANA 239
V++ A
Sbjct: 223 PEVEEYTGA 231
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Score = 38.5 bits (89), Expect = 4e-04
Identities = 17/139 (12%), Positives = 32/139 (23%), Gaps = 12/139 (8%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
K V A G I + L+ R + +P L A +
Sbjct: 4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKA-INPKVNITFHTY 62
Query: 68 NLLEEGS-----FDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFP 122
++ + I D V + + G +N + F
Sbjct: 63 DVTVPVAESKKLLKKIFDQLKTVDILINGAGILDDHQIERTIAINFTGLVNTTTAILDFW 122
Query: 123 SIK------RVVLTSSMAA 135
+ + S+
Sbjct: 123 DKRKGGPGGIIANICSVTG 141
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Score = 38.4 bits (89), Expect = 5e-04
Identities = 33/222 (14%), Positives = 66/222 (29%), Gaps = 33/222 (14%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTR-------HLLALDGASE 60
+GK V +TG + + + + ++ G V + + T LD E
Sbjct: 4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTIE 63
Query: 61 --RLQLFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSC 118
++ E GS D +V+ T ++ + ++++ + G + +
Sbjct: 64 EDWQRVVAYAREEFGSVDGLVNNAG--ISTGMFLETESVERFRKVVEINLTGVFIGMKTV 121
Query: 119 AKFPSIK---RVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAE 175
+V SS A ++ S K LSK A
Sbjct: 122 IPAMKDAGGGSIVNISSAAGLMGL------------ALTSSYGASKWGVRG--LSKLAAV 167
Query: 176 DAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLI 217
+ I + +++P M P+ T
Sbjct: 168 ELG-----TDRIRVNSVHPGMTYTPMTAETGIRQGEGNYPNT 204
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.2 bits (88), Expect = 5e-04
Identities = 33/247 (13%), Positives = 69/247 (27%), Gaps = 27/247 (10%)
Query: 8 AGKVVCVTGASGYIASWLVKLL---LSRGYTVKASVRDPNDPKKTRHLLALDGASERLQL 64
V +TGAS L L LS G + S R + ++ + L ++ L
Sbjct: 5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVL 64
Query: 65 FKANLLEEGSFDSIVDGC-----------DGVCHTASPFYHDAKDPQVELLDPAVKGTLN 113
A+L E ++ + + A+ +K V
Sbjct: 65 AAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWA 124
Query: 114 VLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYP-LSKT 172
+ + + L + + + + + + + L +
Sbjct: 125 LNLTS--MLCLTSGTLNAFQDSPGLSKTVVNISSLCALQPYKGWGLYCAGKAARDMLYQV 182
Query: 173 LAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVN 232
LA + E S+ +++ P + + Q TS L K + + +
Sbjct: 183 LAAE-------EPSVRVLSYAPGPLDNDMQQLARETSKDPEL-RSKLQKLKSDGALV--D 232
Query: 233 VKDVANA 239
A
Sbjct: 233 CGTSAQK 239
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 38.5 bits (89), Expect = 5e-04
Identities = 18/143 (12%), Positives = 42/143 (29%), Gaps = 17/143 (11%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKAN 68
KV VTGA I + K+L V R + G + +
Sbjct: 10 NKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGY--ESSGYAGD 67
Query: 69 LLEEGSFDSIVDG--------CDGVCHTASPFYHDAKDPQVELLDPAVKGTLN--VLNSC 118
+ ++ +++ V + + + + + ++ LN +
Sbjct: 68 VSKKEEISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQ 127
Query: 119 AKFPSIK-----RVVLTSSMAAV 136
+ R++ SS+ +
Sbjct: 128 PISKRMINNRYGRIINISSIVGL 150
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Score = 38.1 bits (88), Expect = 6e-04
Identities = 11/94 (11%), Positives = 27/94 (28%), Gaps = 8/94 (8%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
K + VTG + I + + + G V R D + + + + + ++
Sbjct: 8 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGV-KTKAYQC 66
Query: 68 NLLEEGSFDSIVD-------GCDGVCHTASPFYH 94
++ + G+ A
Sbjct: 67 DVSNTDIVTKTIQQIDADLGPISGLIANAGVSVV 100
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 38.1 bits (88), Expect = 6e-04
Identities = 31/203 (15%), Positives = 66/203 (32%), Gaps = 23/203 (11%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
GKV V+G + + + V+ +++ G V + K LA + +
Sbjct: 5 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA-----DAARYVHL 59
Query: 68 NLLEEGSFDSIVD-------GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAK 120
++ + + + VD G + + A +E + +N
Sbjct: 60 DVTQPAQWKAAVDTAVTAFGGLHVLVNNA----GILNIGTIEDYALTEWQRILDVNLTGV 115
Query: 121 FPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWK 180
F I+ VV A + + + + K + L+K+ A +
Sbjct: 116 FLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRG--LTKSTALELG-- 171
Query: 181 FAKEKSIDLVTINPAMVIGPLLQ 203
I + +I+P +V P+
Sbjct: 172 ---PSGIRVNSIHPGLVKTPMTD 191
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Score = 37.9 bits (87), Expect = 7e-04
Identities = 25/144 (17%), Positives = 39/144 (27%), Gaps = 16/144 (11%)
Query: 8 AGKVVCVTGASGY--IASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDG-------- 57
+GK V G + + + L G V S + + L G
Sbjct: 7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRAD 66
Query: 58 ---ASERLQLFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNV 114
E LF G D +V A + Q LL V V
Sbjct: 67 VTQDEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLV 126
Query: 115 LNSCAKFPSIKR---VVLTSSMAA 135
+ P ++ +V + A+
Sbjct: 127 AVARRAEPLLREGGGIVTLTYYAS 150
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Score = 37.9 bits (87), Expect = 7e-04
Identities = 31/241 (12%), Positives = 64/241 (26%), Gaps = 23/241 (9%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
GK +TG++ I + + G V + + + T
Sbjct: 4 DGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARAT-----AAEIGPAACAIAL 58
Query: 68 NLLEEGSFDSIVD------GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKF 121
++ ++ S D V G + + + A ++ +NV +
Sbjct: 59 DVTDQASIDRCVAELLDRWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMM 118
Query: 122 PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKF 181
++ R + +A C L+++ +
Sbjct: 119 QAVAR----AMIAGGRGGKIINMASQAGRRGEALVGVYCATKAAVISLTQSAGLNLI--- 171
Query: 182 AKEKSIDLVTINPAMVIGPLLQPTLNTSAAA--VLSLIKGAQTYPNVTFG-WVNVKDVAN 238
I++ I P +V G A + K Q V FG +D+
Sbjct: 172 --RHGINVNAIAPGVVDGEHWDGVDAKFADYENLPRGEKKRQVGAAVPFGRMGRAEDLTG 229
Query: 239 A 239
Sbjct: 230 M 230
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Score = 37.4 bits (86), Expect = 9e-04
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDG 57
GK+ VTGAS I + + L +RG V + N + L +G
Sbjct: 3 EGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGANG 52
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 37.4 bits (86), Expect = 0.001
Identities = 26/147 (17%), Positives = 48/147 (32%), Gaps = 13/147 (8%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
AGKV TGA I + L RG +V + + + L + +A
Sbjct: 5 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGS-SSKAAEEVVAELKKLGAQGVAIQA 63
Query: 68 NLLEEGSFDSIVD-------GCDGVCH-----TASPFYHDAKDPQVELLDPAVKGTLNVL 115
++ + ++ D G D V ++ ++ + +G V
Sbjct: 64 DISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVA 123
Query: 116 NSCAKFPSIKRVVLTSSMAAVLNTGKP 142
K ++ +S A + TG P
Sbjct: 124 QQGLKHCRRGGRIILTSSIAAVMTGIP 150
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.7 bits (87), Expect = 0.001
Identities = 14/56 (25%), Positives = 21/56 (37%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQ 63
G+VV VTGA G + RG V + + + A D E ++
Sbjct: 6 DGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIR 61
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Score = 37.8 bits (86), Expect = 0.001
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 12 VCVTGASGYIASWLVKLLLSR-GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLL 70
V V G +GYI S V+ LL ++V K+ H+ + + +LQ
Sbjct: 5 VLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKP 64
Query: 71 EEGSFDSIVDGCD 83
+ ++ D
Sbjct: 65 PWADRYAALEVGD 77
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Score = 37.1 bits (86), Expect = 0.001
Identities = 35/245 (14%), Positives = 69/245 (28%), Gaps = 40/245 (16%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHL----LALDGASER-- 61
AGK V VTG + I + + G V P + + +D ER
Sbjct: 4 AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEAIGGAFFQVDLEDERER 63
Query: 62 LQLFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKF 121
++ + G D +V+ + S + + +L+ + +++ A+
Sbjct: 64 VRFVEEAAYALGRVDVLVN-NAAIAAPGSALTVRLPEWR-RVLEVNLTAPMHLSALAARE 121
Query: 122 PSIKR---VVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSK----TLA 174
+V +S+ + Y SK L
Sbjct: 122 MRKVGGGAIVNVASVQG--LFAEQENA--------------------AYNASKGGLVNLT 159
Query: 175 EDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVK 234
A A I + + P + + + S + + G +
Sbjct: 160 RSLALDLAP-LRIRVNAVAPGAIATEAVLEAIALSPDPERTRRDWEDLHALRRLG--KPE 216
Query: 235 DVANA 239
+VA A
Sbjct: 217 EVAEA 221
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 37.0 bits (85), Expect = 0.002
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP-KKTRHLLALDGASERLQLFK 66
GKV VTGA I + L RG V + + + ++ + +G+ K
Sbjct: 17 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGS--DAACVK 74
Query: 67 ANLLEEGSFDSIVD 80
AN+ + +
Sbjct: 75 ANVGVVEDIVRMFE 88
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 36.9 bits (85), Expect = 0.002
Identities = 10/73 (13%), Positives = 23/73 (31%), Gaps = 2/73 (2%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
K V VTG + I +V+ G + R+ + + G ++
Sbjct: 7 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGF--QVTGSVC 64
Query: 68 NLLEEGSFDSIVD 80
+ + ++
Sbjct: 65 DASLRPEREKLMQ 77
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Score = 36.6 bits (84), Expect = 0.002
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 2/72 (2%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKAN 68
+V VTGA+ I + + L G V R + T L G +
Sbjct: 2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGV--EADGRTCD 59
Query: 69 LLEEGSFDSIVD 80
+ +++V
Sbjct: 60 VRSVPEIEALVA 71
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Score = 36.7 bits (84), Expect = 0.002
Identities = 13/52 (25%), Positives = 17/52 (32%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGAS 59
GKV VTGA G I L G + + +K + G
Sbjct: 4 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVE 55
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Score = 36.4 bits (84), Expect = 0.002
Identities = 10/73 (13%), Positives = 25/73 (34%), Gaps = 4/73 (5%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
K+ +TG + I + + G + + P + A+ R+ K
Sbjct: 4 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEA----AIRNLGRRVLTVKC 59
Query: 68 NLLEEGSFDSIVD 80
++ + G ++
Sbjct: 60 DVSQPGDVEAFGK 72
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 36.2 bits (83), Expect = 0.002
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKK 48
+ V VTG + I + + L + G+ V + R PK
Sbjct: 6 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKG 46
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.3 bits (83), Expect = 0.002
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKT 49
GK V VTGAS I + L G V + R +K
Sbjct: 13 QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKV 54
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Score = 36.2 bits (83), Expect = 0.002
Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 12/89 (13%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
+GK + VTGA+ I + L G ++ A R+ + A+ A
Sbjct: 4 SGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAE-----AVAALEAEAIAVVA 58
Query: 68 NLLEEGSFDSIVD-------GCDGVCHTA 89
++ + + +++ GV H A
Sbjct: 59 DVSDPKAVEAVFAEALEEFGRLHGVAHFA 87
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Score = 35.4 bits (81), Expect = 0.004
Identities = 12/73 (16%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
G+V VTG S + + + L G +V + R+ + + L + F+
Sbjct: 4 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLT-EKYGVETMAFRC 62
Query: 68 NLLEEGSFDSIVD 80
++ +++
Sbjct: 63 DVSNYEEVKKLLE 75
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Score = 35.6 bits (81), Expect = 0.004
Identities = 30/210 (14%), Positives = 64/210 (30%), Gaps = 16/210 (7%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKAN 68
GKV VTG++ I + L ++G + + + ++ A+
Sbjct: 4 GKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGAD 63
Query: 69 LLEEGSFDSIVD------GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFP 122
L + + +VD G + + H A LN+
Sbjct: 64 LSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTA 123
Query: 123 SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFA 182
+ + ++N +++ + K + + +K A + A
Sbjct: 124 AALPHMKKQGFGRIINIASAHGLVASANKSAYVA---AKHGVVGF--TKVTALETA---- 174
Query: 183 KEKSIDLVTINPAMVIGPLLQPTLNTSAAA 212
+ I I P V PL++ ++ A
Sbjct: 175 -GQGITANAICPGWVRTPLVEKQISALAEK 203
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 281 | |||
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 100.0 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 100.0 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 100.0 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 100.0 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 100.0 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 100.0 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 100.0 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 100.0 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 100.0 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 100.0 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 100.0 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 100.0 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 100.0 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 99.97 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 99.97 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 99.97 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 99.96 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 99.96 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 99.96 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 99.96 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 99.96 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 99.96 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 99.96 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 99.96 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 99.96 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 99.96 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 99.96 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 99.96 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.95 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 99.95 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 99.95 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 99.95 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 99.95 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 99.95 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 99.95 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.95 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 99.95 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 99.95 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 99.95 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 99.95 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 99.95 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 99.95 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 99.95 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 99.95 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 99.95 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 99.95 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 99.95 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 99.95 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 99.94 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 99.94 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 99.94 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 99.94 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 99.94 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 99.94 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 99.94 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 99.94 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 99.94 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 99.94 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 99.94 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 99.94 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 99.94 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 99.94 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 99.94 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 99.93 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 99.93 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 99.93 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 99.93 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 99.93 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 99.92 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 99.92 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 99.92 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 99.92 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 99.92 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 99.91 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 99.91 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 99.9 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 99.89 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 99.89 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 99.89 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 99.89 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 99.88 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 99.87 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 99.87 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 99.86 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 99.85 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 99.83 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 99.83 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 99.82 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 99.82 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 99.77 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 99.53 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.74 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 98.72 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.66 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 98.55 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 98.53 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 98.5 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 98.37 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 98.36 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 98.35 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 98.35 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 98.32 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 98.26 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 98.22 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 98.19 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 98.18 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 98.17 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 98.15 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 98.14 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 98.13 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 98.07 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 98.07 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 98.06 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 98.01 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 97.99 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.89 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 97.87 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 97.87 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 97.86 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 97.86 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 97.85 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 97.84 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 97.84 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 97.83 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 97.81 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 97.78 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 97.72 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 97.71 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 97.7 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 97.7 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 97.69 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 97.69 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 97.69 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 97.64 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 97.63 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 97.56 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.54 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 97.53 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.52 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 97.51 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.46 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 97.44 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 97.43 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 97.43 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 97.35 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 97.35 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 97.34 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 97.34 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 97.31 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 97.24 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 97.23 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.23 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 97.2 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 97.16 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 97.15 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 97.11 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 97.1 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 97.07 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 97.07 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 97.02 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.01 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 97.0 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.99 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 96.97 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 96.93 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 96.89 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 96.89 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 96.81 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 96.78 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.76 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 96.75 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 96.72 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 96.72 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 96.7 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 96.7 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.65 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 96.57 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.56 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.53 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 96.52 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 96.48 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.47 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 96.46 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 96.46 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 96.45 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 96.45 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 96.44 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 96.43 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.39 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 96.38 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 96.35 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 96.27 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.26 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.26 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 96.24 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 96.24 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 96.24 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 96.21 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 96.18 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 96.18 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 96.16 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 96.15 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.11 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 96.1 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 96.1 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 96.07 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 96.06 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 96.05 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 96.0 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 95.99 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 95.86 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 95.85 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.84 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 95.83 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 95.82 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 95.78 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 95.76 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 95.76 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 95.69 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 95.67 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 95.66 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 95.64 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 95.62 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 95.54 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 95.52 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 95.41 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 95.41 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 95.4 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 95.32 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 95.3 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 95.26 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.1 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 95.09 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 95.03 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 94.99 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 94.89 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 94.81 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 94.81 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 94.76 | |
| d1p9oa_ | 290 | Phosphopantothenoylcysteine synthetase {Human (Hom | 94.73 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.6 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 94.55 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 94.53 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 94.5 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 94.23 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 94.18 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 94.16 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 94.16 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.11 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 93.99 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 93.98 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 93.91 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 93.9 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 93.8 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 93.68 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 93.51 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 93.34 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 93.29 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 93.28 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 93.18 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 93.17 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 93.16 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 93.0 | |
| d2g82a1 | 168 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 92.86 | |
| d1dssg1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 92.85 | |
| d1k3ta1 | 190 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 92.84 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 92.82 | |
| d1gsoa2 | 105 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 92.74 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 92.5 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 92.48 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 92.4 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 92.29 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 92.24 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 92.19 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 92.12 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 91.95 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 91.93 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 91.77 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 91.54 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 91.4 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 91.28 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 91.05 | |
| d1vkza2 | 90 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 91.03 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 90.92 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 90.76 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 90.42 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 90.39 | |
| d2blna2 | 203 | Polymyxin resistance protein ArnA, N-terminal doma | 90.35 | |
| d1p3y1_ | 183 | MrsD {Bacillus sp. hil-y85/54728 [TaxId: 69002]} | 89.98 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 89.78 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 89.59 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 89.49 | |
| d2b4ro1 | 166 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 89.46 | |
| d1f0ka_ | 351 | Peptidoglycan biosynthesis glycosyltransferase Mur | 89.44 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 89.43 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 89.42 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 89.09 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 89.06 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 88.47 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 88.03 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 87.9 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 87.69 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 87.56 | |
| d2csua3 | 163 | Acetate-CoA ligase alpha chain, AcdA, domains 2 an | 87.51 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 87.5 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 87.47 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 87.35 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 86.98 | |
| d1gado1 | 166 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 86.6 | |
| d1fmta2 | 206 | Methionyl-tRNAfmet formyltransferase {Escherichia | 86.29 | |
| d2bisa1 | 437 | Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI | 85.57 | |
| d2bw0a2 | 203 | 10-formyltetrahydrofolate dehydrogenase domain 1 { | 85.33 | |
| d1u8fo1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 85.28 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 84.96 | |
| d1hdgo1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 84.79 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 84.6 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 84.53 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 84.47 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 83.92 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 83.39 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 83.38 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 83.35 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 82.67 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 82.15 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 82.13 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 82.05 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 82.05 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 81.78 | |
| d1rzua_ | 477 | Glycogen synthase 1, GlgA {Agrobacterium tumefacie | 81.65 | |
| d1rm4a1 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 80.64 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 80.62 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 80.4 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 80.38 |
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.9e-41 Score=288.70 Aligned_cols=253 Identities=16% Similarity=0.154 Sum_probs=192.6
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC--cchhhhhhhc-cCCCCcEEEEEcCCCCcCcHHHHhc--CCcE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND--PKKTRHLLAL-DGASERLQLFKANLLEEGSFDSIVD--GCDG 84 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~--~~~~~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~ 84 (281)
|+|||||||||||++|+++|+++|++|++++|.... ...+...... .....+++++++|++|.+++.++++ ++|+
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPDE 81 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCSE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCCE
Confidence 689999999999999999999999999999996532 2222222211 1123579999999999999999998 5699
Q ss_pred eEEecccCCC-CCCCccchhhhhHHHHHHHHHHHhhhCC--CccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhc
Q 023515 85 VCHTASPFYH-DAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCK 161 (281)
Q Consensus 85 Vih~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 161 (281)
|||+||.... ...+..+..+++|+.||.+|+++|++.. +.++|||+||..+|+ . ....+++|+++..|.
T Consensus 82 v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG-~----~~~~~~~E~~~~~P~--- 153 (357)
T d1db3a_ 82 VYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYG-L----VQEIPQKETTPFYPR--- 153 (357)
T ss_dssp EEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGT-T----CCSSSBCTTSCCCCC---
T ss_pred EEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhC-C----CCCCCcCCCCCCCCC---
Confidence 9999997432 2233345788999999999999999861 345799999987653 2 234568899887653
Q ss_pred cCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCC--ccHHHHHHHHhCCC-----CCCCCCccceeHH
Q 023515 162 QSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLN--TSAAAVLSLIKGAQ-----TYPNVTFGWVNVK 234 (281)
Q Consensus 162 ~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~~~~~i~~~ 234 (281)
++|+.+|.++|.+++.+++.++++++++||+++|||+..+... .+...+.....+.+ ..+++.++|+|++
T Consensus 154 ---~~Y~~sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~ 230 (357)
T d1db3a_ 154 ---SPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAK 230 (357)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEESCTTCEECCEEHH
T ss_pred ---ChHHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCCCcCCCchHHHHHHHHHHhCCCceEEECCCCeeecceeec
Confidence 6799999999999999999999999999999999997554321 22334444455542 1257889999999
Q ss_pred HHHHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCC
Q 023515 235 DVANAHIQAFEVPSANGRYCLV-ERVSHYSEIVNIIRELYP 274 (281)
Q Consensus 235 D~a~~i~~~~~~~~~~g~~~~~-~~~~t~~e~~~~i~~~~~ 274 (281)
|+|++++.++++. ..+.||++ ++.+|+.|+++.+.+.++
T Consensus 231 D~~~a~~~~~~~~-~~~~yni~sg~~~s~~~~~~~~~~~~g 270 (357)
T d1db3a_ 231 DYVKMQWMMLQQE-QPEDFVIATGVQYSVRQFVEMAAAQLG 270 (357)
T ss_dssp HHHHHHHHTTSSS-SCCCEEECCCCCEEHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHhCC-CCCeEEECCCCceehHHHHHHHHHHhC
Confidence 9999999999865 45789886 688999999999999886
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=100.00 E-value=7.4e-39 Score=273.58 Aligned_cols=271 Identities=29% Similarity=0.460 Sum_probs=204.8
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
..+|+|||||||||||++|+++|+++|++|++++|+..+...+.+............++.+|++|.+.+..+++++|.|+
T Consensus 9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~ 88 (342)
T d1y1pa1 9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVA 88 (342)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEE
T ss_pred CCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhh
Confidence 35899999999999999999999999999999999876555544433222222455678899999999999999999999
Q ss_pred EecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCCh---------
Q 023515 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDP--------- 157 (281)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~--------- 157 (281)
|+|+..... ......++.|+.||.+++++|.+..++++|||+||+.+.++.. +.......+|+.+...
T Consensus 89 ~~a~~~~~~--~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~SS~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~ 165 (342)
T d1y1pa1 89 HIASVVSFS--NKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPK-PNVEGIYLDEKSWNLESIDKAKTLP 165 (342)
T ss_dssp ECCCCCSCC--SCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCC-TTCCCCEECTTCCCHHHHHHHHHSC
T ss_pred hhccccccc--ccccccccchhhhHHHHHHhhhcccccccccccccceeeccCC-CCCCCcccccccccccccccccccc
Confidence 999876542 3344788899999999999999975789999999987655322 2223333444432211
Q ss_pred -hhhccCCchhhhhHHHHHHHHHHHHHhc--CCcEEEEcCCcccCCCCCCCCC--ccHHHHHHHHhCCCC---CCCCCcc
Q 023515 158 -EVCKQSELWYPLSKTLAEDAAWKFAKEK--SIDLVTINPAMVIGPLLQPTLN--TSAAAVLSLIKGAQT---YPNVTFG 229 (281)
Q Consensus 158 -~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--g~~~~~irp~~v~g~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~ 229 (281)
..+..+.++|+.+|..+|.+++.+.+.+ +++++++||+.+|||...+... ....++..+..+... .+.+.++
T Consensus 166 e~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~i~p~~v~Gp~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~ 245 (342)
T d1y1pa1 166 ESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALMPPQY 245 (342)
T ss_dssp TTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHHHHTCCSEE
T ss_pred ccCCCCCcCcccchhHhHHHHHHHhhhhcccccccceecccceeCCCCCccccccchHHHHHHHHcCCcCcccCCcccee
Confidence 1111123569999999999999998876 4678899999999996544332 345566666666632 2567789
Q ss_pred ceeHHHHHHHHHHhhcCCCCCccEEE-ecCCCCHHHHHHHHHHhCCCCCCCC
Q 023515 230 WVNVKDVANAHIQAFEVPSANGRYCL-VERVSHYSEIVNIIRELYPAFQLPE 280 (281)
Q Consensus 230 ~i~~~D~a~~i~~~~~~~~~~g~~~~-~~~~~t~~e~~~~i~~~~~~~~~p~ 280 (281)
|+|++|+|++++.+++++...|.|++ +++.+++.|+++.|.+.+|...+|.
T Consensus 246 ~v~v~Dva~~~i~~l~~~~~~g~~~~~~~~~~t~~eia~~i~k~~p~~~~~~ 297 (342)
T d1y1pa1 246 YVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPA 297 (342)
T ss_dssp EEEHHHHHHHHHHHHHCTTCCSCEEEECCEEECHHHHHHHHHHHCTTSCCCC
T ss_pred eeeHHHHHHHHHHhhcCccccceEEEEcCCceEHHHHHHHHHHHcCCCcCCc
Confidence 99999999999999998887776655 4689999999999999998766553
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=100.00 E-value=2.8e-39 Score=274.03 Aligned_cols=251 Identities=19% Similarity=0.214 Sum_probs=199.7
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEE------EEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCc
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTV------KASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCD 83 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V------~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d 83 (281)
|||||||||||||++|+++|+++|++| +.+++....... ..+... ....+++++.+|+.+..........+|
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~-~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~d 78 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNR-ANLAPV-DADPRLRFVHGDIRDAGLLARELRGVD 78 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCG-GGGGGG-TTCTTEEEEECCTTCHHHHHHHTTTCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccH-hHhhhh-hcCCCeEEEEeccccchhhhccccccc
Confidence 579999999999999999999998754 444443222111 111111 123579999999999998888888999
Q ss_pred EeEEecccCCC-CCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhcc
Q 023515 84 GVCHTASPFYH-DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQ 162 (281)
Q Consensus 84 ~Vih~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 162 (281)
.|+|+|+.... .........+++|+.|+.+++++|.+. ++++|||+||+++|+. ....+++|+++..|.
T Consensus 79 ~vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~-~~~~~I~~Ss~~~yg~-----~~~~~~~E~~~~~p~---- 148 (322)
T d1r6da_ 79 AIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDA-GVGRVVHVSTNQVYGS-----IDSGSWTESSPLEPN---- 148 (322)
T ss_dssp EEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHT-TCCEEEEEEEGGGGCC-----CSSSCBCTTSCCCCC----
T ss_pred eEEeecccccccccccchHHHhhhhHHHHHHHHHHHHHc-CCceEEEeecceeecC-----CCCCCCCCCCCCCCC----
Confidence 99999976322 122334578899999999999999998 8899999999877652 234567888887764
Q ss_pred CCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCC--C--CCCCCccceeHHHHHH
Q 023515 163 SELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--T--YPNVTFGWVNVKDVAN 238 (281)
Q Consensus 163 ~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~i~~~D~a~ 238 (281)
++|+.+|.++|.+++.++++++++++++||+++|||++.+. ..+..++.++..+.+ . .|++.++|+|++|+|+
T Consensus 149 --~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~-~~i~~~i~~~~~~~~i~v~~~g~~~r~~i~v~D~a~ 225 (322)
T d1r6da_ 149 --SPYAASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPE-KLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCR 225 (322)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTT-SHHHHHHHHHHTTCCEEEETTSCCEEEEEEHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHHHHHhCCCEEEEEeeeEECcCCCcC-cHHHHHHHHHHcCCCcEEecCCCeEEccEEHHHHHH
Confidence 67999999999999999999999999999999999986543 335566777777774 2 3688999999999999
Q ss_pred HHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 239 AHIQAFEVPSANGRYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 239 ~i~~~~~~~~~~g~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
++..+++++..++.||++ ++..++.|+++.+.+.++.
T Consensus 226 ai~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~ 263 (322)
T d1r6da_ 226 GIALVLAGGRAGEIYHIGGGLELTNRELTGILLDSLGA 263 (322)
T ss_dssp HHHHHHHHCCTTCEEEECCCCEEEHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCCCCeeEEeecccchhHHHHHHHHHHhCC
Confidence 999999988877799987 6889999999999998863
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.1e-40 Score=276.11 Aligned_cols=249 Identities=18% Similarity=0.256 Sum_probs=186.2
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC-cchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 87 (281)
.|||||||||||||++|+++|+++|++|++++|.... ...+.... ...++.....|+ ++.++.++|+|||
T Consensus 1 kKKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~----~~~~~d~~~~~~-----~~~~~~~~d~Vih 71 (312)
T d2b69a1 1 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWI----GHENFELINHDV-----VEPLYIEVDQIYH 71 (312)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGT----TCTTEEEEECCT-----TSCCCCCCSEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHHHHhc----CCCceEEEehHH-----HHHHHcCCCEEEE
Confidence 4789999999999999999999999999999874432 22222211 112455544444 4445568999999
Q ss_pred ecccCCC-CCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCch
Q 023515 88 TASPFYH-DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (281)
Q Consensus 88 ~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 166 (281)
+||.... .........+++|+.|+.+|+++|++. ++ ++||+||.++|+.. ...+++|+...... +..+.++
T Consensus 72 lAa~~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~-~~-k~I~~SS~~vy~~~-----~~~~~~e~~~~~~~-~~~p~~~ 143 (312)
T d2b69a1 72 LASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRV-GA-RLLLASTSEVYGDP-----EVHPQSEDYWGHVN-PIGPRAC 143 (312)
T ss_dssp CCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHH-TC-EEEEEEEGGGGBSC-----SSSSBCTTCCCBCC-SSSTTHH
T ss_pred CcccCCchhHHhCHHHHHHHHHHHHHHHHHHHHHc-CC-cEEEEEChheecCC-----CCCCCCccccCCCC-CCCCccH
Confidence 9997442 123334588999999999999999997 65 79999998776522 22234444322111 1123467
Q ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCC-ccHHHHHHHHhCCC--C--CCCCCccceeHHHHHHHHH
Q 023515 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLN-TSAAAVLSLIKGAQ--T--YPNVTFGWVNVKDVANAHI 241 (281)
Q Consensus 167 Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~-~~~~~~~~~~~~~~--~--~~~~~~~~i~~~D~a~~i~ 241 (281)
|+.+|.++|.+++.+++.+|++++++||++||||++..... .+..++.++..|.+ . .|.+.++|+|++|++++++
T Consensus 144 Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~i~~~i~~~~~g~~i~i~~~g~~~r~~i~v~D~~~~~~ 223 (312)
T d2b69a1 144 YDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLV 223 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEESSSCCEEECEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEEEeeeEECCCCCCCCccHHHHHHHHHHcCCCeEEeCCCCeeEccEEHHHHHHHHH
Confidence 99999999999999999999999999999999998765433 34567777888874 2 3578899999999999999
Q ss_pred HhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 242 QAFEVPSANGRYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 242 ~~~~~~~~~g~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
.+++.. ..+.||++ +..+++.++++.+++.++.
T Consensus 224 ~~~~~~-~~~~~n~~~~~~~~~~~~~~~i~~~~~~ 257 (312)
T d2b69a1 224 ALMNSN-VSSPVNLGNPEEHTILEFAQLIKNLVGS 257 (312)
T ss_dssp HHHTSS-CCSCEEESCCCEEEHHHHHHHHHHHHTC
T ss_pred HHHhhc-cCCceEecCCcccchhhHHHHHHHHhCC
Confidence 998765 45789886 6899999999999998864
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=1.8e-39 Score=279.27 Aligned_cols=256 Identities=18% Similarity=0.213 Sum_probs=192.6
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--CCcEeEE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVCH 87 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~Vih 87 (281)
|||||||||||||++|+++|+++|++|++..++.........+... ....+++++.+|++|++.+..+++ ++|+|||
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vih 79 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDI-SESNRYNFEHADICDSAEITRIFEQYQPDAVMH 79 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTT-TTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHhh-hhcCCcEEEEccCCCHHHHHHHHHhCCCCEEEE
Confidence 4799999999999999999999998755544433222222222211 123589999999999999999887 6899999
Q ss_pred ecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCC--------CccEEEEeccceeeecCCCC-----CCCCeeeecCC
Q 023515 88 TASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFP--------SIKRVVLTSSMAAVLNTGKP-----RTPDVVVDETW 153 (281)
Q Consensus 88 ~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~--------~~~~~v~~SS~~~~~~~~~~-----~~~~~~~~e~~ 153 (281)
+||..... ........+++|+.|+.+++++|++.. +.++|||+||..+|+..... ........|++
T Consensus 80 lAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~e~~ 159 (361)
T d1kewa_ 80 LAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETT 159 (361)
T ss_dssp CCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCTTS
T ss_pred CccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCCccccccCCCCcccCC
Confidence 99974321 112234788999999999999998751 34589999998776522110 00111123344
Q ss_pred CCChhhhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCC----CCCCCcc
Q 023515 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT----YPNVTFG 229 (281)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 229 (281)
+..| .+.|+.+|.++|.+++.+++.++++++++||++||||..... ..+..++.++..|.+. .|++.++
T Consensus 160 ~~~p------~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~-~~i~~~i~~~~~g~~~~v~g~g~~~r~ 232 (361)
T d1kewa_ 160 AYAP------SSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPE-KLIPLVILNALEGKPLPIYGKGDQIRD 232 (361)
T ss_dssp CCCC------CSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTT-SHHHHHHHHHHHTCCEEEETTSCCEEE
T ss_pred CCCC------CCHHHHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCCCcC-cHHHHHHHHHHcCCCcEEeCCCCeEEe
Confidence 4443 467999999999999999999999999999999999986543 2456677778888742 3588999
Q ss_pred ceeHHHHHHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhC
Q 023515 230 WVNVKDVANAHIQAFEVPSANGRYCLV-ERVSHYSEIVNIIRELY 273 (281)
Q Consensus 230 ~i~~~D~a~~i~~~~~~~~~~g~~~~~-~~~~t~~e~~~~i~~~~ 273 (281)
|+|++|+|++++.++++...++.||++ ++..++.|+++.+.+.+
T Consensus 233 ~i~v~D~a~ai~~~~~~~~~~~~~Ni~s~~~~s~~~~~~~i~~~~ 277 (361)
T d1kewa_ 233 WLYVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLL 277 (361)
T ss_dssp EEEHHHHHHHHHHHHHHCCTTCEEEECCCCEEEHHHHHHHHHHHH
T ss_pred CEEHHHHHHHHHHHHhcCCCCCeEEECCCCCcchHHHHhHhhhhc
Confidence 999999999999999988777799987 57899999999988754
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=1.7e-38 Score=271.17 Aligned_cols=256 Identities=16% Similarity=0.168 Sum_probs=202.8
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC-Ccchhhhhhhcc--CCCCcEEEEEcCCCCcCcHHHHhcCCc
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN-DPKKTRHLLALD--GASERLQLFKANLLEEGSFDSIVDGCD 83 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~d 83 (281)
++.|+|||||||||||++|+++|+++|++|++++|... ....+....... ....+++++.+|+.|...+.......+
T Consensus 14 ~~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~ 93 (341)
T d1sb8a_ 14 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVD 93 (341)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCS
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeecccccccccccccccc
Confidence 35789999999999999999999999999999998443 222222211111 112468999999999988888888999
Q ss_pred EeEEecccCC-CCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhcc
Q 023515 84 GVCHTASPFY-HDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQ 162 (281)
Q Consensus 84 ~Vih~a~~~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 162 (281)
.|+|+++... ....+.....+++|+.|+.+++++|.+. ++++|||+||..+|+ . .+..+.+|+++..|.
T Consensus 94 ~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~-~~~~~i~~SS~~vyg-~----~~~~~~~E~~~~~p~---- 163 (341)
T d1sb8a_ 94 YVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDA-KVQSFTYAASSSTYG-D----HPGLPKVEDTIGKPL---- 163 (341)
T ss_dssp EEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-TCSEEEEEEEGGGGT-T----CCCSSBCTTCCCCCC----
T ss_pred ccccccccccccccccCccchhheeehhHHHHHHHHHhc-CCceEEEcccceeeC-C----CCCCCccCCCCCCCC----
Confidence 9999987532 1122334578899999999999999998 889999999988764 2 345568899887764
Q ss_pred CCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCC---ccHHHHHHHHhCCCC----CCCCCccceeHHH
Q 023515 163 SELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLN---TSAAAVLSLIKGAQT----YPNVTFGWVNVKD 235 (281)
Q Consensus 163 ~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~i~~~D 235 (281)
+.|+.+|.++|.+++.+++.++++++++||+++|||...+... .+...+..+..|.+. .|.+.++|+|++|
T Consensus 164 --~~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~~~~~~~~~~i~~~~~~~~~g~~i~~~g~g~~~r~~i~v~D 241 (341)
T d1sb8a_ 164 --SPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIEN 241 (341)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHH
T ss_pred --CcchHHHHHHHHHHHHHHHHhCCCeEEEEeceeeccCcCCCCchhhhHHHHHHHHHcCCceEEcCCCCEEEEEEEEec
Confidence 6799999999999999999999999999999999998765433 234566777888743 2578899999999
Q ss_pred HHHHHHHhhcCCCC--CccEEEe-cCCCCHHHHHHHHHHhCC
Q 023515 236 VANAHIQAFEVPSA--NGRYCLV-ERVSHYSEIVNIIRELYP 274 (281)
Q Consensus 236 ~a~~i~~~~~~~~~--~g~~~~~-~~~~t~~e~~~~i~~~~~ 274 (281)
+|.++..++..... ++.|+++ ++..|+.|+++.|.+.++
T Consensus 242 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~si~~i~~~i~~~~~ 283 (341)
T d1sb8a_ 242 TVQANLLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLA 283 (341)
T ss_dssp HHHHHHHHHTCCGGGCSEEEEESCSCCEEHHHHHHHHHHHHH
T ss_pred cchhhhhhhhccccccceeeeecccccchHHHHHHHHHHHhc
Confidence 99999999876543 3488887 588999999999998875
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=1e-37 Score=266.85 Aligned_cols=258 Identities=16% Similarity=0.197 Sum_probs=196.5
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC-cchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+||+|||||||||||++|+++|+++|++|.++.++... .......... ...+++++.+|++|.+.+..++++.|.|+
T Consensus 1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~~~~~~~~--~~~~i~~~~~Di~d~~~~~~~~~~~~~v~ 78 (346)
T d1oc2a_ 1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAI--LGDRVELVVGDIADAELVDKLAAKADAIV 78 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGG--CSSSEEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccccHHHHHHh--hcCCeEEEEccCCCHHHHHHHHhhhhhhh
Confidence 37899999999999999999999999876666554321 1111111111 13589999999999999999999999999
Q ss_pred EecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCC-------CCCCCeeeecCCCCChh
Q 023515 87 HTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGK-------PRTPDVVVDETWFSDPE 158 (281)
Q Consensus 87 h~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~-------~~~~~~~~~e~~~~~~~ 158 (281)
|+|+..... ...+....+++|+.|+.+++++|... + .++|++||..+|+..+. ........+|+++..|
T Consensus 79 ~~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~-~-~k~i~~ss~~vyg~~~~~~~~~~~~~~~~~~~~e~~~~~p- 155 (346)
T d1oc2a_ 79 HYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKY-D-IRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNP- 155 (346)
T ss_dssp ECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHH-T-CEEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCCCC-
T ss_pred hhhhcccccchhhCcccceeeehHhHHhhhhhhccc-c-ccccccccceEecccCccccccccccCcccccccCCCCCC-
Confidence 999863321 11223478899999999999999997 5 47899999876642110 1122334555555554
Q ss_pred hhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCC----CCCCCCccceeHH
Q 023515 159 VCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ----TYPNVTFGWVNVK 234 (281)
Q Consensus 159 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~ 234 (281)
.+.|+.+|.++|.+++.+++.++++++++||+++|||..... ......+.....+.+ ..|++.++|+|++
T Consensus 156 -----~s~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~~~~-~~~~~~i~~~~~~~~~~i~~~g~~~r~~i~v~ 229 (346)
T d1oc2a_ 156 -----SSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIE-KFIPRQITNILAGIKPKLYGEGKNVRDWIHTN 229 (346)
T ss_dssp -----CSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCTT-SHHHHHHHHHHHTCCCEEETTSCCEEECEEHH
T ss_pred -----CCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecceeCCCCCcc-chhHHHHHHHHcCCceeEeCCCCccccccchh
Confidence 367999999999999999999999999999999999975433 234455566666653 2368999999999
Q ss_pred HHHHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCC
Q 023515 235 DVANAHIQAFEVPSANGRYCLV-ERVSHYSEIVNIIRELYPAF 276 (281)
Q Consensus 235 D~a~~i~~~~~~~~~~g~~~~~-~~~~t~~e~~~~i~~~~~~~ 276 (281)
|+|++++.++.++..++.|++. ++..++.++++.+.+.++..
T Consensus 230 D~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 272 (346)
T d1oc2a_ 230 DHSTGVWAILTKGRMGETYLIGADGEKNNKEVLELILEKMGQP 272 (346)
T ss_dssp HHHHHHHHHHHHCCTTCEEEECCSCEEEHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHhhcccCccccccccccccchHHHHHHHHHhCCC
Confidence 9999999999988888888776 68899999999999998753
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=3.1e-37 Score=265.46 Aligned_cols=252 Identities=15% Similarity=0.129 Sum_probs=191.7
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 87 (281)
++|||||||||||||++|+++|+++||+|++++|....... .. .....+..+|+++.+.+..+++++|.|||
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~--~~------~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 85 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMT--ED------MFCDEFHLVDLRVMENCLKVTEGVDHVFN 85 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSC--GG------GTCSEEEECCTTSHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchh--hh------cccCcEEEeechhHHHHHHHhhcCCeEee
Confidence 48899999999999999999999999999999886543211 10 13567888999999999999999999999
Q ss_pred ecccCCCC--CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCC--CeeeecCCCCChhhhccC
Q 023515 88 TASPFYHD--AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTP--DVVVDETWFSDPEVCKQS 163 (281)
Q Consensus 88 ~a~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~--~~~~~e~~~~~~~~~~~~ 163 (281)
+|+..... ...........|+.++.+++++|++. ++++||++||..++......... .....|.++..|
T Consensus 86 ~a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~-~vk~~i~~SS~~~~~~~~~~~~~~~~~~~~e~~~~~p------ 158 (363)
T d2c5aa1 86 LAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARIN-GIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEP------ 158 (363)
T ss_dssp CCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCC------
T ss_pred cccccccccccccccccccccccchhhHHHHhHHhh-CccccccccccccccccccccccccccccccCCcCCC------
Confidence 99764332 13444588899999999999999998 89999999998776532211111 112233444333
Q ss_pred CchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCcc---HHHHHH-HHhCCC--C--CCCCCccceeHHH
Q 023515 164 ELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTS---AAAVLS-LIKGAQ--T--YPNVTFGWVNVKD 235 (281)
Q Consensus 164 ~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~---~~~~~~-~~~~~~--~--~~~~~~~~i~~~D 235 (281)
.+.|+.+|.++|++++.+.+++|++++++||+++|||......... ...... .....+ . .|.+.++|+|++|
T Consensus 159 ~~~Yg~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~v~D 238 (363)
T d2c5aa1 159 QDAFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDE 238 (363)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCCEEEEEeeeEeccCCcccccccccccccccccccccccccccCCCCeEEEEeehhH
Confidence 4679999999999999999999999999999999999754332211 111222 222222 2 2578899999999
Q ss_pred HHHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 236 VANAHIQAFEVPSANGRYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 236 ~a~~i~~~~~~~~~~g~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
+++++..++++. .++.||++ +..+++.|+++.+.+.++.
T Consensus 239 ~~~~~~~~~~~~-~~~~~ni~~~~~~s~~~l~~~i~~~~g~ 278 (363)
T d2c5aa1 239 CVEGVLRLTKSD-FREPVNIGSDEMVSMNEMAEMVLSFEEK 278 (363)
T ss_dssp HHHHHHHHHHSS-CCSCEEECCCCCEEHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhCC-CCCeEEEecCCcccHHHHHHHHHHHhCC
Confidence 999999998865 46789886 6899999999999998874
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=2.2e-36 Score=255.78 Aligned_cols=250 Identities=18% Similarity=0.142 Sum_probs=192.0
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCc--chhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--CCcEe
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP--KKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGV 85 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~V 85 (281)
|+|||||||||||++|+++|+++||+|++++|..... ..+..+. ...+++++++|++|.+.+.+.+. ..+++
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~~~~l~~~~----~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~ 76 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELG----IEGDIQYEDGDMADACSVQRAVIKAQPQEV 76 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTT----CGGGEEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcccHHHHHHhc----ccCCcEEEEccccChHHhhhhhcccccccc
Confidence 6899999999999999999999999999999976532 2222221 12479999999999998888776 56788
Q ss_pred EEecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCC
Q 023515 86 CHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSE 164 (281)
Q Consensus 86 ih~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 164 (281)
+|+|+..... ........++.|+.|+.+++++|++....++|++.||. ++++. ......+|+++..|.
T Consensus 77 ~~~a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~-~~~~~----~~~~~~~E~~~~~p~------ 145 (321)
T d1rpna_ 77 YNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTS-EMFGL----IQAERQDENTPFYPR------ 145 (321)
T ss_dssp EECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEG-GGGCS----CSSSSBCTTSCCCCC------
T ss_pred ccccccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccch-hhcCc----ccCCCCCCCCCcccc------
Confidence 8888753322 22334588899999999999999998334567777775 45532 234456788877654
Q ss_pred chhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCC--ccHHHHHHHHhCC-CC----CCCCCccceeHHHHH
Q 023515 165 LWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLN--TSAAAVLSLIKGA-QT----YPNVTFGWVNVKDVA 237 (281)
Q Consensus 165 ~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~--~~~~~~~~~~~~~-~~----~~~~~~~~i~~~D~a 237 (281)
++|+.+|.++|.+++.+++.++++++++||+++|||....... .+...+.+...+. +. .|++.++|+|++|+|
T Consensus 146 ~~Y~~sK~~~E~~~~~~~~~~~~~~~~lr~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~i~~g~g~~~r~~i~v~D~~ 225 (321)
T d1rpna_ 146 SPYGVAKLYGHWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYV 225 (321)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEEECEEHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHhhcCCcEEEEEEecccCCCccccccHHHHHHHHHHHHhCCCCcEEECCCCeEEccEEeHHHH
Confidence 6799999999999999999999999999999999997544321 1233445555554 22 257889999999999
Q ss_pred HHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 238 NAHIQAFEVPSANGRYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 238 ~~i~~~~~~~~~~g~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
++++.+++++.. +.||++ ++..++.++++.+.+.++.
T Consensus 226 ~~~~~~~~~~~~-~~~ni~~~~~~s~~~~~~~~~~~~~~ 263 (321)
T d1rpna_ 226 EAMWLMLQQDKA-DDYVVATGVTTTVRDMCQIAFEHVGL 263 (321)
T ss_dssp HHHHHHHHSSSC-CCEEECCSCEEEHHHHHHHHHHTTTC
T ss_pred HHHHHHHhcCCc-CCceecccccceehhhhHHHHHHhCC
Confidence 999999998754 667776 6889999999999998764
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.4e-36 Score=258.21 Aligned_cols=254 Identities=17% Similarity=0.133 Sum_probs=189.5
Q ss_pred CeE-EEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCc--chhhhhhhcc--CCCCcEEEEEcCCCCcCcHHHHhc--CC
Q 023515 10 KVV-CVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP--KKTRHLLALD--GASERLQLFKANLLEEGSFDSIVD--GC 82 (281)
Q Consensus 10 ~~i-lItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~--~~ 82 (281)
||| ||||||||||++|+++|+++||+|++++|..+.. ..+..+.... ....+++++++|++|++.+..+++ ++
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 80 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKP 80 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCC
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhccc
Confidence 567 9999999999999999999999999999976432 2223222211 112478999999999999999886 67
Q ss_pred cEeEEecccCCC-CCCCccchhhhhHHHHHHHHHHHhhhCC--CccEEEEeccceeeecCCCCCCCCeeeecCCCCChhh
Q 023515 83 DGVCHTASPFYH-DAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEV 159 (281)
Q Consensus 83 d~Vih~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~ 159 (281)
++|+|+|+.... .........+++|+.||.+++++|++.. +.++|||+||..+|+ . ....+++|+++..|.
T Consensus 81 ~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg-~----~~~~~~~E~~~~~P~- 154 (347)
T d1t2aa_ 81 TEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYG-K----VQEIPQKETTPFYPR- 154 (347)
T ss_dssp SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTC-S----CSSSSBCTTSCCCCC-
T ss_pred ceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheec-C----CCCCCCCCCCCCCCC-
Confidence 899999875321 1122334678999999999999999872 335899999987653 2 234568899887754
Q ss_pred hccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCc--cHHHHHHHHhC-CCC----CCCCCcccee
Q 023515 160 CKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNT--SAAAVLSLIKG-AQT----YPNVTFGWVN 232 (281)
Q Consensus 160 ~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~--~~~~~~~~~~~-~~~----~~~~~~~~i~ 232 (281)
++|+.||.++|++++.+++.++++++++||+++|||........ ....+.....+ .+. .+.+.++|+|
T Consensus 155 -----~~Yg~sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~g~~~r~~i~ 229 (347)
T d1t2aa_ 155 -----SPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGH 229 (347)
T ss_dssp -----SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEESCTTCEECCEE
T ss_pred -----CHHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCCCccccccceeeehhhcCCcceeecCCCcceeeeeE
Confidence 67999999999999999998999999999999999975543211 12222222233 322 2578899999
Q ss_pred HHHHHHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 233 VKDVANAHIQAFEVPSANGRYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 233 ~~D~a~~i~~~~~~~~~~g~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
++|++++++.++++... +.|+.. +...++.+..+.+...++.
T Consensus 230 v~D~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (347)
T d1t2aa_ 230 AKDYVEAMWLMLQNDEP-EDFVIATGEVHSVREFVEKSFLHIGK 272 (347)
T ss_dssp HHHHHHHHHHHHHSSSC-CCEEECCSCCEEHHHHHHHHHHHTTC
T ss_pred ecHHHHHHHHHhhcCCC-ccceeccccccccchhhhhhhhhhcc
Confidence 99999999999998754 456655 6788999999988887764
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1e-36 Score=259.82 Aligned_cols=252 Identities=19% Similarity=0.193 Sum_probs=184.4
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcc-hhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--CCcEeE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPK-KTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVC 86 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~Vi 86 (281)
|||||||||||||++|++.|+++|++|++++|-..... .+....... ..+++++++|++|.+.+.++++ ++|+||
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vi 78 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLG--GKHPTFVEGDIRNEALMTEILHDHAIDTVI 78 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHH--TSCCEEEECCTTCHHHHHHHHHHTTCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhc--CCCCEEEEeecCCHHHHHHHHhccCCCEEE
Confidence 57999999999999999999999999999988443322 212111111 2479999999999999999988 799999
Q ss_pred EecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCC-CCChhhhccCC
Q 023515 87 HTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETW-FSDPEVCKQSE 164 (281)
Q Consensus 87 h~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~-~~~~~~~~~~~ 164 (281)
|+||..... ........+++|+.|+.+++++|++. ++++||++||..++... ......|++ ... +.
T Consensus 79 HlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~-~v~~~i~~Ss~~vy~~~-----~~~~~~e~~~~~~------p~ 146 (338)
T d1udca_ 79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSSSATVYGDQ-----PKIPYVESFPTGT------PQ 146 (338)
T ss_dssp ECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEGGGGCSC-----CSSSBCTTSCCCC------CS
T ss_pred ECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHh-CCCEEEecCcceEEccc-----cccccccccccCC------Cc
Confidence 999864321 12223488999999999999999998 89999999998776422 222233333 223 24
Q ss_pred chhhhhHHHHHHHHHHHHHh-cCCcEEEEcCCcccCCCCCCCCC--------ccHH-HHHHHHhCC-C----------CC
Q 023515 165 LWYPLSKTLAEDAAWKFAKE-KSIDLVTINPAMVIGPLLQPTLN--------TSAA-AVLSLIKGA-Q----------TY 223 (281)
Q Consensus 165 ~~Y~~sK~~~e~~~~~~~~~-~g~~~~~irp~~v~g~~~~~~~~--------~~~~-~~~~~~~~~-~----------~~ 223 (281)
++|+.+|.++|.++..+..+ .+++++++||+++|||....... .... ++.....+. + ..
T Consensus 147 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~g~~~~~~~ 226 (338)
T d1udca_ 147 SPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTED 226 (338)
T ss_dssp SHHHHHHHHHHHHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCSSSTT
T ss_pred chHHHHHhhhhHHHHHHHhhccCCeEEEEeeccEEeccCCCCCCCCccccHHHHHHHHHHHHhcCCCCEEEeCCCcccCC
Confidence 67999999999999876665 48999999999999986543221 1222 233232222 1 11
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCC---CCccEEEec-CCCCHHHHHHHHHHhCCC
Q 023515 224 PNVTFGWVNVKDVANAHIQAFEVPS---ANGRYCLVE-RVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 224 ~~~~~~~i~~~D~a~~i~~~~~~~~---~~g~~~~~~-~~~t~~e~~~~i~~~~~~ 275 (281)
|.+.++|+|++|++.++..+..... ..++||+++ +++|+.|+++.+.+.+|.
T Consensus 227 g~~~rd~i~v~D~~~~~~~~~~~~~~~~~~~i~Ni~~~~~~si~e~~~~i~~~~g~ 282 (338)
T d1udca_ 227 GTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGK 282 (338)
T ss_dssp SSCEECEEEHHHHHHHHHHHHHHHTTCCEEEEEEESCSSCEEHHHHHHHHHHHHTS
T ss_pred CCceeeEEEEeehhhhccccccccccccCcceeeecCCCCCcHHHHHHHHHHHHCC
Confidence 5678999999999988887665322 234899874 789999999999998763
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=2.3e-36 Score=262.70 Aligned_cols=266 Identities=17% Similarity=0.147 Sum_probs=182.8
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEc-------------CCCCcchh-hhhhhc-cCCCCcEEEEEcCCCCcC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVR-------------DPNDPKKT-RHLLAL-DGASERLQLFKANLLEEG 73 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r-------------~~~~~~~~-~~~~~~-~~~~~~~~~~~~D~~~~~ 73 (281)
||||||||||||||++|+++|+++||+|+++|. +....... ..+... .....+++++++|++|.+
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~ 80 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDFE 80 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCHH
Confidence 689999999999999999999999999999972 00011010 000000 001247899999999999
Q ss_pred cHHHHhc--CCcEeEEecccCCCC----CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCC-CC
Q 023515 74 SFDSIVD--GCDGVCHTASPFYHD----AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRT-PD 146 (281)
Q Consensus 74 ~~~~~~~--~~d~Vih~a~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~-~~ 146 (281)
.+..+++ ++|+|||+||..... .......++++|+.|+.+++++|++....+.+++.||..++.....+.. ..
T Consensus 81 ~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~~~~~~~~~~ 160 (393)
T d1i24a_ 81 FLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGY 160 (393)
T ss_dssp HHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSSCBCSSE
T ss_pred HHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeecccccccccccccccccc
Confidence 9999987 579999999863321 1122336789999999999999999733445677777544432211111 11
Q ss_pred eeeecCCCCChh-hhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCC---------------C-cc
Q 023515 147 VVVDETWFSDPE-VCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL---------------N-TS 209 (281)
Q Consensus 147 ~~~~e~~~~~~~-~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~---------------~-~~ 209 (281)
....++...... .+..+.++|+.+|.++|.+++.++++++++++++||+++|||...... . .+
T Consensus 161 ~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~i 240 (393)
T d1i24a_ 161 ITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTAL 240 (393)
T ss_dssp EEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTCCHH
T ss_pred ccccccccccccccccccccHHHHHhhhhcccccccccccceeeeecccccccCCCccccccccccccccccccccccch
Confidence 112222111000 011234679999999999999999999999999999999998743221 1 12
Q ss_pred HHHHHHHHhCCC--C--CCCCCccceeHHHHHHHHHHhhcCCCCCccEE---EecCCCCHHHHHHHHHHhCC
Q 023515 210 AAAVLSLIKGAQ--T--YPNVTFGWVNVKDVANAHIQAFEVPSANGRYC---LVERVSHYSEIVNIIRELYP 274 (281)
Q Consensus 210 ~~~~~~~~~~~~--~--~~~~~~~~i~~~D~a~~i~~~~~~~~~~g~~~---~~~~~~t~~e~~~~i~~~~~ 274 (281)
...+.+...+.+ . .+.+.++|+|++|+++++..++++....|.|+ .+++..++.|+++.+.+..+
T Consensus 241 ~~~~~~~~~~~~~~i~g~~~~~rd~v~v~D~~~a~~~~~~~~~~~g~~~~~~~~~~~~si~el~~~i~~~~~ 312 (393)
T d1i24a_ 241 NRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSVNELASLVTKAGS 312 (393)
T ss_dssp HHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHSCCCTTCEEEEEECSEEEEHHHHHHHHHHHHH
T ss_pred hhhhHHhhcCCeeEEeeecccccccccccchHHHHHHHHHhhcccceeeeecCCCCeeEHHHHHHHHHHHHH
Confidence 445556666663 2 25788999999999999999999887777543 33567899999999888743
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.2e-35 Score=251.86 Aligned_cols=251 Identities=15% Similarity=0.235 Sum_probs=186.7
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHH-HhcCCcEeEE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDS-IVDGCDGVCH 87 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~-~~~~~d~Vih 87 (281)
|||||||||||||++|+++|+++| ++|+++++.......+.. ..+++++++|+++.+++.+ +.+++|+|||
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~-------~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih 73 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLN-------HPHFHFVEGDISIHSEWIEYHVKKCDVVLP 73 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTT-------CTTEEEEECCTTTCSHHHHHHHHHCSEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhcc-------CCCeEEEECccCChHHHHHHHHhCCCcccc
Confidence 479999999999999999999999 589999886543333211 2579999999998877665 6678999999
Q ss_pred ecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChh-hhccCCc
Q 023515 88 TASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPE-VCKQSEL 165 (281)
Q Consensus 88 ~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~ 165 (281)
+|+..... ..+.....+++|+.|+.+++++|.+. +. ++++.||..+++... ....+|.....+. ++..+.+
T Consensus 74 ~a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~-~~-~~~~~ss~~~~~~~~-----~~~~~~~~~~~~~~~~~~p~~ 146 (342)
T d2blla1 74 LVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKY-RK-RIIFPSTSEVYGMCS-----DKYFDEDHSNLIVGPVNKPRW 146 (342)
T ss_dssp CBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHT-TC-EEEEECCGGGGBTCC-----CSSBCTTTCCCBCCCTTCGGG
T ss_pred ccccccccccccCCccccccccccccccccccccc-cc-ccccccccccccccc-----ccccccccccccccccCCCcc
Confidence 99874421 11222377899999999999999997 65 567888877766322 1122222211111 1111235
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCC-------ccHHHHHHHHhCCCC----CCCCCccceeHH
Q 023515 166 WYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLN-------TSAAAVLSLIKGAQT----YPNVTFGWVNVK 234 (281)
Q Consensus 166 ~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~-------~~~~~~~~~~~~~~~----~~~~~~~~i~~~ 234 (281)
.|+.+|.++|.+++.+++.+|++++++||+.+|||....... ....++.+++.|.+. .|++.++|+|++
T Consensus 147 ~Y~~sK~~~E~~~~~~~~~~~~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~r~~i~v~ 226 (342)
T d2blla1 147 IYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIR 226 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEGGGSCCEEECEEHH
T ss_pred hhhhcccchhhhhhhhhcccCceeEEeeccccccccccccccccccccccchHHHHHHHhCCCccccCCCCeeeeecccc
Confidence 699999999999999999999999999999999997544321 134556677777742 268899999999
Q ss_pred HHHHHHHHhhcCCC--C-CccEEEe-cC-CCCHHHHHHHHHHhCC
Q 023515 235 DVANAHIQAFEVPS--A-NGRYCLV-ER-VSHYSEIVNIIRELYP 274 (281)
Q Consensus 235 D~a~~i~~~~~~~~--~-~g~~~~~-~~-~~t~~e~~~~i~~~~~ 274 (281)
|+|+++..+++++. . ++.||++ ++ .+|+.|+++.+.+.++
T Consensus 227 D~~~a~~~~~~~~~~~~~g~~~Nig~~~~~~t~~~l~~~i~~~~~ 271 (342)
T d2blla1 227 DGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFE 271 (342)
T ss_dssp HHHHHHHHHHHCGGGTTTTEEEEECCTTSEEEHHHHHHHHHHHHH
T ss_pred cccceeeeehhhccccCCCeEEEEecccchhHHHHHHHHHHHHhC
Confidence 99999999998753 2 3489986 44 5799999999988865
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=1.9e-35 Score=251.73 Aligned_cols=255 Identities=16% Similarity=0.127 Sum_probs=191.9
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC--cchhhhhhhc--cCCCCcEEEEEcCCCCcCcHHHHhc--CC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND--PKKTRHLLAL--DGASERLQLFKANLLEEGSFDSIVD--GC 82 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~--~~~~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~--~~ 82 (281)
.|++||||||||||++|+++|+++||+|++++|..+. ...+..+... ......++++.+|+++.+.+...++ ++
T Consensus 1 ~k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~~ 80 (339)
T d1n7ha_ 1 RKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKP 80 (339)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCC
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhhcc
Confidence 4789999999999999999999999999999996542 2233332211 1123568999999999999988876 68
Q ss_pred cEeEEecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhC----CCccEEEEeccceeeecCCCCCCCCeeeecCCCCCh
Q 023515 83 DGVCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKF----PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDP 157 (281)
Q Consensus 83 d~Vih~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~ 157 (281)
|+|||+|+..... ..+.....++.|+.++.+++++++.. ....++++.||...+. .....++|+++..|
T Consensus 81 D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~------~~~~~~~E~~~~~p 154 (339)
T d1n7ha_ 81 DEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFG------STPPPQSETTPFHP 154 (339)
T ss_dssp SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGT------TSCSSBCTTSCCCC
T ss_pred chhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecccceecc------cCCCCCCCCCCCCC
Confidence 9999999874432 11233478899999999999999864 1334677777754432 12345788888775
Q ss_pred hhhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCC--ccHHHHHHHHhCC-CC----CCCCCccc
Q 023515 158 EVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLN--TSAAAVLSLIKGA-QT----YPNVTFGW 230 (281)
Q Consensus 158 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~--~~~~~~~~~~~~~-~~----~~~~~~~~ 230 (281)
. +.|+.+|.++|.++..+.+.++++++++||++||||....... .+...+.....+. +. .+.+.++|
T Consensus 155 ~------~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~rd~ 228 (339)
T d1n7ha_ 155 R------SPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDW 228 (339)
T ss_dssp C------SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEESCTTCEEEC
T ss_pred c------chhhHHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCCCCCCCcchhhHHHHHHhcCCCCeEEeCCCCccccc
Confidence 4 6799999999999999999999999999999999997554321 1222333333443 21 26789999
Q ss_pred eeHHHHHHHHHHhhcCCCCCccEEEecCCCCHHHHHHHHHHhCCC
Q 023515 231 VNVKDVANAHIQAFEVPSANGRYCLVERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 231 i~~~D~a~~i~~~~~~~~~~g~~~~~~~~~t~~e~~~~i~~~~~~ 275 (281)
+|++|+|+++..+++++...+.++..+...++.++++.+.+.++.
T Consensus 229 ~~v~D~a~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 273 (339)
T d1n7ha_ 229 GFAGDYVEAMWLMLQQEKPDDYVVATEEGHTVEEFLDVSFGYLGL 273 (339)
T ss_dssp EEHHHHHHHHHHHHTSSSCCEEEECCSCEEEHHHHHHHHHHHTTC
T ss_pred eeeehHHHHHHHHHhcCCCCccccccccccccchhhhhhhhhhhc
Confidence 999999999999999987766677778889999999999998864
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=1.4e-34 Score=250.61 Aligned_cols=260 Identities=20% Similarity=0.175 Sum_probs=186.5
Q ss_pred CCeEEEeCCchHHHHHHHHHHHH-CCCEEEEEEcCC---CCcchh---h---hhhh------ccCCCCcEEEEEcCCCCc
Q 023515 9 GKVVCVTGASGYIASWLVKLLLS-RGYTVKASVRDP---NDPKKT---R---HLLA------LDGASERLQLFKANLLEE 72 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~-~g~~V~~~~r~~---~~~~~~---~---~~~~------~~~~~~~~~~~~~D~~~~ 72 (281)
.|||||||||||||++|+++|++ .|++|+++++-. .....+ . .... .......+.++++|++|.
T Consensus 2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~ 81 (383)
T d1gy8a_ 2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE 81 (383)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccCH
Confidence 56899999999999999999996 689999998511 111110 0 0000 011224688999999999
Q ss_pred CcHHHHhc---CCcEeEEecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCC--CCCC
Q 023515 73 GSFDSIVD---GCDGVCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKP--RTPD 146 (281)
Q Consensus 73 ~~~~~~~~---~~d~Vih~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~--~~~~ 146 (281)
+.++++++ ++|+|||+|+..... ..+......++|+.++.+++++++.. ++++++++||...+...... ....
T Consensus 82 ~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~ 160 (383)
T d1gy8a_ 82 DFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLH-KCDKIIFSSSAAIFGNPTMGSVSTNA 160 (383)
T ss_dssp HHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEEEEGGGTBSCCC-----CC
T ss_pred HHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhcc-CCcccccccccccccccccccccccc
Confidence 99999886 679999999864432 12233477889999999999999998 88999999998765422111 1112
Q ss_pred eeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCc--------cHHHHHHHHh
Q 023515 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNT--------SAAAVLSLIK 218 (281)
Q Consensus 147 ~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~--------~~~~~~~~~~ 218 (281)
.++.|+++..| .++|+.+|.++|.+++.+.+.+|++++++||+++|||........ .+..+.++..
T Consensus 161 ~~~~e~~~~~p------~~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~~~~~~~~~~~~~~~~ip~ii~~~~~ 234 (383)
T d1gy8a_ 161 EPIDINAKKSP------ESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMS 234 (383)
T ss_dssp CCBCTTSCCBC------SSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHH
T ss_pred cccccccCCCC------CCHHHhhHhHHHHHHHHHHHHhCCCEEEEecceeeccCccccccccccccchhHHHHHHHHHh
Confidence 34555555554 477999999999999999999999999999999999986543221 1222222221
Q ss_pred C----------------CC----------CCCCCCccceeHHHHHHHHHHhhcCC---------CCCccEEEe-cCCCCH
Q 023515 219 G----------------AQ----------TYPNVTFGWVNVKDVANAHIQAFEVP---------SANGRYCLV-ERVSHY 262 (281)
Q Consensus 219 ~----------------~~----------~~~~~~~~~i~~~D~a~~i~~~~~~~---------~~~g~~~~~-~~~~t~ 262 (281)
+ .+ ..|.+.|+|+|++|+|++++.+++.. ...++||++ ++++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~~~~~~~~~~~~~~~~~i~Ni~s~~~~s~ 314 (383)
T d1gy8a_ 235 DIAPDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSV 314 (383)
T ss_dssp HHSCC-----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSCCEEH
T ss_pred hccccccchhhhhhhcCCceEEeCCccccCCCCeEEeeEEHHHHHHHHHHHHhhhccccccccccCccEEEeCCCCceeH
Confidence 1 10 12467789999999999999988632 122479986 689999
Q ss_pred HHHHHHHHHhCCC
Q 023515 263 SEIVNIIRELYPA 275 (281)
Q Consensus 263 ~e~~~~i~~~~~~ 275 (281)
.|+++.+.+.++.
T Consensus 315 ~el~~~i~~~~~~ 327 (383)
T d1gy8a_ 315 REVIEVARKTTGH 327 (383)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCC
Confidence 9999999998764
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.2e-34 Score=246.08 Aligned_cols=256 Identities=18% Similarity=0.218 Sum_probs=188.2
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC-cchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--CCcEeE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVC 86 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~Vi 86 (281)
|.|||||||||||++|+++|+++|++|+++++.... ........... ..+++++++|++|.+.++.+++ ++|+||
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 79 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLT--KHHIPFYEVDLCDRKGLEKVFKEYKIDSVI 79 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHH--TSCCCEEECCTTCHHHHHHHHHHSCCCEEE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhHHhhc--ccCCeEEEeecCCHHHHHHHHhccCCCEEE
Confidence 469999999999999999999999999999874332 22222221111 2478999999999999999887 799999
Q ss_pred EecccCCC-CCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCc
Q 023515 87 HTASPFYH-DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL 165 (281)
Q Consensus 87 h~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 165 (281)
|+||.... ........+.++|+.++.+++++|++. ++++||++||+.+|+. ........+++|+.+..|. +
T Consensus 80 hlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~-~i~~~i~~SS~~vyg~-~~~~~~~~~~~e~~~~~p~------~ 151 (347)
T d1z45a2 80 HFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQY-NVSKFVFSSSATVYGD-ATRFPNMIPIPEECPLGPT------N 151 (347)
T ss_dssp ECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEGGGGCC-GGGSTTCCSBCTTSCCCCC------S
T ss_pred EccccccccccccCcccccccchhhhHHHHHHHHhc-ccceEEeecceeeecC-cccCCCCCccccccCCCCC------C
Confidence 99997432 112233478889999999999999998 8899999999887752 2223345567787776654 6
Q ss_pred hhhhhHHHHHHHHHHHHHh--cCCcEEEEcCCcccCCCCCCCCC--------ccHHHHHHHHhCC--C--CCC-------
Q 023515 166 WYPLSKTLAEDAAWKFAKE--KSIDLVTINPAMVIGPLLQPTLN--------TSAAAVLSLIKGA--Q--TYP------- 224 (281)
Q Consensus 166 ~Y~~sK~~~e~~~~~~~~~--~g~~~~~irp~~v~g~~~~~~~~--------~~~~~~~~~~~~~--~--~~~------- 224 (281)
+|+.+|.++|.+++.+.+. .+++++++||+++||+....... .....+.....+. + .+|
T Consensus 152 ~Y~~sK~~~E~~~~~~~~~~~~~~~~~~lR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~ 231 (347)
T d1z45a2 152 PYGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRD 231 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC------CC
T ss_pred hhHhHHHHHHHHHHHHHHhhccCCcEEEEeecceEeecCCCccCCCccccHHHHHHHHHHHHhcCCCCeEEeCCCccccC
Confidence 7999999999999998764 58899999999999975432211 1223333333322 2 222
Q ss_pred -CCCccceeHHHHHHHHHHhhcCCC-------CCccEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 225 -NVTFGWVNVKDVANAHIQAFEVPS-------ANGRYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 225 -~~~~~~i~~~D~a~~i~~~~~~~~-------~~g~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
...+|++++.|++.+++.+++... ..+.||++ ++++|+.|+++.+.+.++.
T Consensus 232 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ni~~~~~~s~~e~~~~i~~~~~~ 291 (347)
T d1z45a2 232 GTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGI 291 (347)
T ss_dssp SSCEECEEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTC
T ss_pred CceeeeeeeeecccccccccccccccccccccccccceecCCCcccHHHHHHHHHHHHCC
Confidence 345788999999999888876321 13479986 6899999999999998764
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.2e-34 Score=242.40 Aligned_cols=253 Identities=19% Similarity=0.174 Sum_probs=181.7
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCc-------chhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP-------KKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-- 80 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-------~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-- 80 (281)
|||||||||||||++|+++|+++|++|++++|..... ..+...... ...++.++++|++|.+.+..++.
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~l~~~~~~~ 80 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQEL--TGRSVEFEEMDILDQGALQRLFKKY 80 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHH--HTCCCEEEECCTTCHHHHHHHHHHC
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCccccccccchHHHHHHHHh--cCCCcEEEEeecccccccccccccc
Confidence 5899999999999999999999999999998632211 111111111 12578999999999999998876
Q ss_pred CCcEeEEecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhh
Q 023515 81 GCDGVCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEV 159 (281)
Q Consensus 81 ~~d~Vih~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~ 159 (281)
++++++|+||..... ........+++|+.|+.+++++|+.. ++++|+|+||..+++... ......+.....
T Consensus 81 ~~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~-~v~~~i~~ss~~~~~~~~----~~~~~~~~~~~~--- 152 (346)
T d1ek6a_ 81 SFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH-GVKNLVFSSSATVYGNPQ----YLPLDEAHPTGG--- 152 (346)
T ss_dssp CEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEEEEGGGGCSCS----SSSBCTTSCCCC---
T ss_pred ccccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhc-Ccccccccccceeeeccc----cccccccccccc---
Confidence 567899999864321 12223478899999999999999998 899999999987765221 111111221122
Q ss_pred hccCCchhhhhHHHHHHHHHHHHHh-cCCcEEEEcCCcccCCCCCCCC--------CccHHHH-HHHHhCC-C-------
Q 023515 160 CKQSELWYPLSKTLAEDAAWKFAKE-KSIDLVTINPAMVIGPLLQPTL--------NTSAAAV-LSLIKGA-Q------- 221 (281)
Q Consensus 160 ~~~~~~~Y~~sK~~~e~~~~~~~~~-~g~~~~~irp~~v~g~~~~~~~--------~~~~~~~-~~~~~~~-~------- 221 (281)
+.++|+.+|..+|+.++.+++. .+++.+++||+++|||...... ......+ ....... +
T Consensus 153 ---~~~~Y~~~k~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~ 229 (346)
T d1ek6a_ 153 ---CTNPYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGND 229 (346)
T ss_dssp ---CSSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSC
T ss_pred ---cCChHHHHHHHHHHHHHHHHHhccCCceEEEeecceeccCCCCCcCccccccHHHHHHHHHHHHHcCCCcEEEcCCc
Confidence 2356999999999999988775 5899999999999998653221 1122222 2222222 1
Q ss_pred ---CCCCCCccceeHHHHHHHHHHhhcCCC---CCccEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 222 ---TYPNVTFGWVNVKDVANAHIQAFEVPS---ANGRYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 222 ---~~~~~~~~~i~~~D~a~~i~~~~~~~~---~~g~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
..+.+.++|+|++|+|.++..++.... ..++||++ +..+++.|+++.|.+.++.
T Consensus 230 ~~~~~g~~~Rdfi~v~D~a~~~~~~~~~~~~~~~~~i~Ni~~~~~~s~~dl~~~i~~~~~~ 290 (346)
T d1ek6a_ 230 YDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGK 290 (346)
T ss_dssp SSSSSSSCEECEEEHHHHHHHHHHHHHHHTTTCCEEEEEECCSCCEEHHHHHHHHHHHHCS
T ss_pred ccCCCCCeeEeEEEEEeccchhhhhccccccccCceEEEeCCCCcccHHHHHHHHHHHhCC
Confidence 125677899999999999988765432 33489987 5889999999999999864
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.8e-33 Score=237.12 Aligned_cols=238 Identities=13% Similarity=0.126 Sum_probs=177.6
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--CCcEeE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVC 86 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~Vi 86 (281)
+|||||||||||||++|+++|+++|+.|++++++.+ .|+.+.+.+.++++ ++|.|+
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~~----------------------~~~~~~~~~~~~~~~~~~d~v~ 59 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDE----------------------LNLLDSRAVHDFFASERIDQVY 59 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTT----------------------CCTTCHHHHHHHHHHHCCSEEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCchh----------------------ccccCHHHHHHHHhhcCCCEEE
Confidence 578999999999999999999999999887764421 47888888888876 689999
Q ss_pred EecccCCCCC--CCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCC
Q 023515 87 HTASPFYHDA--KDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSE 164 (281)
Q Consensus 87 h~a~~~~~~~--~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 164 (281)
|+|+...... .....+.+++|+.||.+++++|.+. ++++|||+||.++|+.. ...+++|+.+.... +..+.
T Consensus 60 ~~a~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~-~v~~~i~~SS~~vyg~~-----~~~~~~E~~~~~~~-~~~~~ 132 (315)
T d1e6ua_ 60 LAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQN-DVNKLLFLGSSCIYPKL-----AKQPMAESELLQGT-LEPTN 132 (315)
T ss_dssp ECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEECCGGGSCTT-----CCSSBCGGGTTSSC-CCGGG
T ss_pred EcchhccccccchhhHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEECCceEcCCC-----CCCCccCCccccCC-CCCCC
Confidence 9997644221 1223467889999999999999998 89999999999877522 23345666544321 11123
Q ss_pred chhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCc--cHH-HH-----HHHHhCCC----CCCCCCcccee
Q 023515 165 LWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNT--SAA-AV-----LSLIKGAQ----TYPNVTFGWVN 232 (281)
Q Consensus 165 ~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~--~~~-~~-----~~~~~~~~----~~~~~~~~~i~ 232 (281)
++|+.+|.++|++++.+++++|++++++||++||||+....... ... .. .....+.+ ..+.+.++|+|
T Consensus 133 ~~Y~~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~ 212 (315)
T d1e6ua_ 133 EPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLH 212 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEESCSCCEECEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCCCCccccccceeeeccchhhhhccCCceEEcCCCceEEEEEE
Confidence 56999999999999999999999999999999999976533221 111 11 11222321 22577899999
Q ss_pred HHHHHHHHHHhhcCCC---------CCccEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 233 VKDVANAHIQAFEVPS---------ANGRYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 233 ~~D~a~~i~~~~~~~~---------~~g~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
++|+++++..++.... ..+.++.+ +...++.++++.+.+.++.
T Consensus 213 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~ 265 (315)
T d1e6ua_ 213 VDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGY 265 (315)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTC
T ss_pred eehhHHHHHHhhhhccccccccccccccccccCCCcchHHHHHHHHHHHHhCC
Confidence 9999999999986543 12366664 6788999999999988764
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=100.00 E-value=2.3e-32 Score=234.00 Aligned_cols=256 Identities=17% Similarity=0.128 Sum_probs=187.7
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--CCcE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDG 84 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~ 84 (281)
+++|||||||||||||++|+++|+++|++|++++|...+...+..... ...+++++++|++|++.+.++++ .+|+
T Consensus 6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~---~~~~i~~~~~Dl~d~~~l~~~~~~~~~~~ 82 (356)
T d1rkxa_ 6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETAR---VADGMQSEIGDIRDQNKLLESIREFQPEI 82 (356)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTT---TTTTSEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhh---cccCCeEEEeeccChHhhhhhhhhchhhh
Confidence 579999999999999999999999999999999998766544322211 12479999999999999998887 6799
Q ss_pred eEEecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccC
Q 023515 85 VCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQS 163 (281)
Q Consensus 85 Vih~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 163 (281)
|+|+|+..... ..+......++|+.|+.+++++|........+++.||. ..+... ....+.+|+.+..|
T Consensus 83 v~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~~-~~~~~~---~~~~~~~~~~~~~p------ 152 (356)
T d1rkxa_ 83 VFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSD-KCYDNK---EWIWGYRENEAMGG------ 152 (356)
T ss_dssp EEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCG-GGBCCC---CSSSCBCTTSCBCC------
T ss_pred hhhhhccccccccccCCccccccccccchhhhhhhhcccccccccccccc-cccccc---ccccccccccccCC------
Confidence 99999864321 22334588899999999999999997345556665554 433221 23444556655554
Q ss_pred CchhhhhHHHHHHHHHHHHHh---------cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCC---CCCCCCccce
Q 023515 164 ELWYPLSKTLAEDAAWKFAKE---------KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ---TYPNVTFGWV 231 (281)
Q Consensus 164 ~~~Y~~sK~~~e~~~~~~~~~---------~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i 231 (281)
.++|+.+|...|..+..++++ +++.++++||+++|||.+..........+.....+.+ ..+.+.++|+
T Consensus 153 ~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (356)
T d1rkxa_ 153 YDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQ 232 (356)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSSCHHHHHHHHHHTTCCEECSCTTCEECCE
T ss_pred CCccccccccchhhhhHHhhhcccchhccccCceEEeccCCCeeCCCcchhhHHHHHHHHHHhCCCceEEeecccccccc
Confidence 357999999999999887653 3678999999999999864433333344444444443 3368889999
Q ss_pred eHHHHHHHHHHhhcCCCCCc-----cEEEe---cCCCCHHHHHHHHHHhCCC
Q 023515 232 NVKDVANAHIQAFEVPSANG-----RYCLV---ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 232 ~~~D~a~~i~~~~~~~~~~g-----~~~~~---~~~~t~~e~~~~i~~~~~~ 275 (281)
|++|+++++..++.+....+ ..+.. +...++.++++.+.+.++.
T Consensus 233 ~v~D~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 284 (356)
T d1rkxa_ 233 HVLEPLSGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGE 284 (356)
T ss_dssp ETHHHHHHHHHHHHHHHHTCGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCT
T ss_pred ccccccchhhhhhhhhcccccccccccccccccccccccchhhhhhHHHhCC
Confidence 99999999999987644322 22222 3578999999999998763
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=99.97 E-value=1.3e-31 Score=227.51 Aligned_cols=259 Identities=13% Similarity=0.124 Sum_probs=183.5
Q ss_pred eEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCc--chhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--CCcEeE
Q 023515 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP--KKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVC 86 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~Vi 86 (281)
||||||||||||++|+++|+++|++|+++++-.... ..+..+. ...+++++++|++|.+.+.++++ ++|+||
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~----~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vi 77 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLS----SLGNFEFVHGDIRNKNDVTRLITKYMPDSCF 77 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHH----TTCCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhh----ccCCcEEEEcccCCHHHHHHHHHhcCCceEE
Confidence 799999999999999999999999999998633222 1112221 12579999999999999999987 469999
Q ss_pred EecccCCCC-CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeec----CCCCC---hh
Q 023515 87 HTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDE----TWFSD---PE 158 (281)
Q Consensus 87 h~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e----~~~~~---~~ 158 (281)
|+|+..... ........+++|+.||.+|+++|.+. +.+++|+.||..++++.... .+....++ ...+. ..
T Consensus 78 h~aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~-~~~~~i~~sS~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T d1orra_ 78 HLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQY-NSNCNIIYSSTNKVYGDLEQ-YKYNETETRYTCVDKPNGYDES 155 (338)
T ss_dssp ECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEEEEEGGGGTTCTT-SCEEECSSCEEETTCTTCBCTT
T ss_pred eecccccccccccChHHHHHHHHHHHHHHHHhhhcc-cccccccccccccccccccc-cccccccccccccccccCcccC
Confidence 999875432 11223488899999999999999998 77777777777776643311 11000000 00000 01
Q ss_pred hhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCc--cHHHHHHHHh-----CCC--C--CCCCC
Q 023515 159 VCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNT--SAAAVLSLIK-----GAQ--T--YPNVT 227 (281)
Q Consensus 159 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~--~~~~~~~~~~-----~~~--~--~~~~~ 227 (281)
.+..+.+.|+.+|...|.++..+.+.++.....+|+.++|++........ ....+..... +.+ . .|.+.
T Consensus 156 ~~~~~~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~ 235 (338)
T d1orra_ 156 TQLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQV 235 (338)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEEESSSCCE
T ss_pred CccccccccccccchhhhhhhhhhhccCcccccccccceeeccccccccccccchhhHHHHHHHhccCCceEEeCCCcee
Confidence 11123467999999999999999999999999999999998764433221 2333333322 222 2 25788
Q ss_pred ccceeHHHHHHHHHHhhcCCCC--CccEEEe---cCCCCHHHHHHHHHHhCCC
Q 023515 228 FGWVNVKDVANAHIQAFEVPSA--NGRYCLV---ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~~--~g~~~~~---~~~~t~~e~~~~i~~~~~~ 275 (281)
++|+|++|++++++.++++... +++|++. +..+++.|+++.+.+.++.
T Consensus 236 r~~~~v~D~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~s~~e~~~~i~~~~~~ 288 (338)
T d1orra_ 236 RDVLHAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNI 288 (338)
T ss_dssp EECEEHHHHHHHHHHHHHTHHHHTTCEEEESSCGGGEEEHHHHHHHHHHHHTC
T ss_pred EeeecccchhhHHHHHHhccccccCccccccccccccccHHHHHHHHHHHHCC
Confidence 9999999999999999987542 3477773 3578999999999998764
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.6e-30 Score=209.65 Aligned_cols=210 Identities=17% Similarity=0.072 Sum_probs=159.7
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCC--EEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCc
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCD 83 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d 83 (281)
.|++|+|||||||||||++|+++|+++|+ +|++++|++....... ..++....+|+.+.+++.++++++|
T Consensus 11 ~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~--------~~~i~~~~~D~~~~~~~~~~~~~~d 82 (232)
T d2bkaa1 11 RMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA--------YKNVNQEVVDFEKLDDYASAFQGHD 82 (232)
T ss_dssp HHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG--------GGGCEEEECCGGGGGGGGGGGSSCS
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccc--------cceeeeeeecccccccccccccccc
Confidence 35688999999999999999999999994 8999999875433211 1467888899999999999999999
Q ss_pred EeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccC
Q 023515 84 GVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQS 163 (281)
Q Consensus 84 ~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 163 (281)
+|||++|.... ......+.++|+.++.+++++|.+. ++++|||+||..++.. .
T Consensus 83 ~vi~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~-~v~~fi~~Ss~~~~~~------------------------~ 135 (232)
T d2bkaa1 83 VGFCCLGTTRG--KAGAEGFVRVDRDYVLKSAELAKAG-GCKHFNLLSSKGADKS------------------------S 135 (232)
T ss_dssp EEEECCCCCHH--HHHHHHHHHHHTHHHHHHHHHHHHT-TCCEEEEECCTTCCTT------------------------C
T ss_pred ccccccccccc--ccchhhhhhhcccccceeeeccccc-CccccccCCccccccC------------------------c
Confidence 99999986432 2233477899999999999999998 8999999999865421 1
Q ss_pred CchhhhhHHHHHHHHHHHHHhcCCc-EEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHH
Q 023515 164 ELWYPLSKTLAEDAAWKFAKEKSID-LVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQ 242 (281)
Q Consensus 164 ~~~Y~~sK~~~e~~~~~~~~~~g~~-~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~ 242 (281)
.++|+.+|..+|+.+.+ .+++ ++++||+.+||+..... ............. ..+......|+++|+|++++.
T Consensus 136 ~~~Y~~~K~~~E~~l~~----~~~~~~~IlRP~~i~G~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~I~~~dvA~a~i~ 208 (232)
T d2bkaa1 136 NFLYLQVKGEVEAKVEE----LKFDRYSVFRPGVLLCDRQESR--PGEWLVRKFFGSL-PDSWASGHSVPVVTVVRAMLN 208 (232)
T ss_dssp SSHHHHHHHHHHHHHHT----TCCSEEEEEECCEEECTTGGGS--HHHHHHHHHHCSC-CTTGGGGTEEEHHHHHHHHHH
T ss_pred cchhHHHHHHhhhcccc----ccccceEEecCceeecCCCcCc--HHHHHHHHHhhcc-CCcccCCCeEEHHHHHHHHHH
Confidence 24599999999998744 5664 89999999999864321 1112222232221 223334457999999999999
Q ss_pred hhcCCCCCccEEEec
Q 023515 243 AFEVPSANGRYCLVE 257 (281)
Q Consensus 243 ~~~~~~~~g~~~~~~ 257 (281)
++.++...+.+++.+
T Consensus 209 ~~~~~~~~~~~i~~~ 223 (232)
T d2bkaa1 209 NVVRPRDKQMELLEN 223 (232)
T ss_dssp HHTSCCCSSEEEEEH
T ss_pred HHhcCccCCeEEEcH
Confidence 998888777777764
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=5e-30 Score=202.90 Aligned_cols=201 Identities=14% Similarity=0.131 Sum_probs=153.5
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
|.||||+||||||+||++++++|+++||+|++++|++.+..... ..+++++++|++|.+++.++++++|+||
T Consensus 1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~--------~~~~~~~~gD~~d~~~l~~al~~~d~vi 72 (205)
T d1hdoa_ 1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEG--------PRPAHVVVGDVLQAADVDKTVAGQDAVI 72 (205)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSS--------CCCSEEEESCTTSHHHHHHHHTTCSEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhccccc--------ccccccccccccchhhHHHHhcCCCEEE
Confidence 34889999999999999999999999999999999876543211 2468999999999999999999999999
Q ss_pred EecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCch
Q 023515 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (281)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 166 (281)
|++|..... ...+++..++.++++++++. ++++||++||..+++... . .+ . ....
T Consensus 73 ~~~g~~~~~------~~~~~~~~~~~~l~~aa~~~-~v~r~i~~ss~~~~~~~~--~---------~~-~------~~~~ 127 (205)
T d1hdoa_ 73 VLLGTRNDL------SPTTVMSEGARNIVAAMKAH-GVDKVVACTSAFLLWDPT--K---------VP-P------RLQA 127 (205)
T ss_dssp ECCCCTTCC------SCCCHHHHHHHHHHHHHHHH-TCCEEEEECCGGGTSCTT--C---------SC-G------GGHH
T ss_pred EEeccCCch------hhhhhhHHHHHHHHHHHHhc-CCCeEEEEeeeeccCCCc--c---------cc-c------cccc
Confidence 999864321 33367889999999999998 899999999976654111 0 00 0 1234
Q ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcC
Q 023515 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEV 246 (281)
Q Consensus 167 Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~ 246 (281)
|...|..+|+++ ++.+++++++||+.+++........ ....+.....+|+++|+|++++.++++
T Consensus 128 ~~~~~~~~e~~l----~~~~~~~tiirp~~~~~~~~~~~~~------------~~~~~~~~~~~i~~~DvA~~~~~~l~~ 191 (205)
T d1hdoa_ 128 VTDDHIRMHKVL----RESGLKYVAVMPPHIGDQPLTGAYT------------VTLDGRGPSRVISKHDLGHFMLRCLTT 191 (205)
T ss_dssp HHHHHHHHHHHH----HHTCSEEEEECCSEEECCCCCSCCE------------EESSSCSSCSEEEHHHHHHHHHHTTSC
T ss_pred cchHHHHHHHHH----HhcCCceEEEecceecCCCCcccEE------------EeeCCCCCCCcCCHHHHHHHHHHHhCC
Confidence 888899998877 4479999999999998643221110 012245667899999999999999998
Q ss_pred CCCCc-cEEEe
Q 023515 247 PSANG-RYCLV 256 (281)
Q Consensus 247 ~~~~g-~~~~~ 256 (281)
+...| .+.++
T Consensus 192 ~~~~g~~~~~s 202 (205)
T d1hdoa_ 192 DEYDGHSTYPS 202 (205)
T ss_dssp STTTTCEEEEE
T ss_pred CCCCCEEEecC
Confidence 87655 44443
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.96 E-value=2.3e-30 Score=214.27 Aligned_cols=221 Identities=11% Similarity=0.038 Sum_probs=173.7
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--CCcEeEE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVCH 87 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~Vih 87 (281)
|||||||||||||++|+++|.++||+|++++|+. +|++|.+.++++++ ++|+|||
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~-----------------------~D~~d~~~~~~~l~~~~~d~vih 58 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD-----------------------LDITNVLAVNKFFNEKKPNVVIN 58 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT-----------------------CCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh-----------------------ccCCCHHHHHHHHHHcCCCEEEe
Confidence 5799999999999999999999999999998753 37888888888887 6799999
Q ss_pred ecccCCC-CCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCch
Q 023515 88 TASPFYH-DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (281)
Q Consensus 88 ~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 166 (281)
+|+.... ............|+..+..+.+.+... . ..+++.||..+++. ....+.+|.+++.|. ..
T Consensus 59 ~a~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~-~-~~~~~~ss~~v~~~-----~~~~~~~e~~~~~~~------~~ 125 (281)
T d1vl0a_ 59 CAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSV-G-AEIVQISTDYVFDG-----EAKEPITEFDEVNPQ------SA 125 (281)
T ss_dssp CCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHH-T-CEEEEEEEGGGSCS-----CCSSCBCTTSCCCCC------SH
T ss_pred eccccccccccccchhhcccccccccccccccccc-c-ccccccccceeeec-----cccccccccccccch------hh
Confidence 9986432 112233467788999999999998885 3 56788888766542 234456777666543 56
Q ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC--CCCCCCCccceeHHHHHHHHHHhh
Q 023515 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA--QTYPNVTFGWVNVKDVANAHIQAF 244 (281)
Q Consensus 167 Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~D~a~~i~~~~ 244 (281)
|+.+|...|.++++ .+.+.+++||+++|||+.+ .....+.....+. ...+++.++|+|++|+++++..++
T Consensus 126 ~~~~k~~~e~~~~~----~~~~~~i~R~~~vyG~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~ 197 (281)
T d1vl0a_ 126 YGKTKLEGENFVKA----LNPKYYIVRTAWLYGDGNN----FVKTMINLGKTHDELKVVHDQVGTPTSTVDLARVVLKVI 197 (281)
T ss_dssp HHHHHHHHHHHHHH----HCSSEEEEEECSEESSSSC----HHHHHHHHHHHCSEEEEESSCEECCEEHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHH----hCCCccccceeEEeCCCcc----cccchhhhhccCCceeecCCceeccchhhhhhhhhhhhh
Confidence 99999999988744 5789999999999998742 3344555555555 345788999999999999999999
Q ss_pred cCCCCCccEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 245 EVPSANGRYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 245 ~~~~~~g~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
++.. .|.||++ ++.+|+.|+++.+.+.+|.
T Consensus 198 ~~~~-~g~~~~~~~~~~s~~e~~~~i~~~~g~ 228 (281)
T d1vl0a_ 198 DEKN-YGTFHCTCKGICSWYDFAVEIFRLTGI 228 (281)
T ss_dssp HHTC-CEEEECCCBSCEEHHHHHHHHHHHHCC
T ss_pred hhcc-cCceeEeCCCccchHHHHHHHHHHhCC
Confidence 8765 4788876 6889999999999999874
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.96 E-value=1.3e-29 Score=206.14 Aligned_cols=228 Identities=16% Similarity=0.121 Sum_probs=170.1
Q ss_pred cchhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-
Q 023515 2 SSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD- 80 (281)
Q Consensus 2 ~~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~- 80 (281)
|.+..+++|++|||||+++||+++++.|+++|++|++++|+.++.+.+..+.+.. ..++.++++|++|++++.++++
T Consensus 3 n~~f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~--g~~~~~~~~Dvt~~~~v~~~~~~ 80 (251)
T d2c07a1 3 NYYYCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSF--GYESSGYAGDVSKKEEISEVINK 80 (251)
T ss_dssp CCCCCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTT--TCCEEEEECCTTCHHHHHHHHHH
T ss_pred ccccCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHH
Confidence 3456688999999999999999999999999999999999876665554443332 2478999999999998888775
Q ss_pred ------CCcEeEEecccC-----CCCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCC
Q 023515 81 ------GCDGVCHTASPF-----YHDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPD 146 (281)
Q Consensus 81 ------~~d~Vih~a~~~-----~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~ 146 (281)
++|++||||+.. .....+.|+..+++|+.++..+.+++.+.+ +.+++|++||..+..+.+
T Consensus 81 ~~~~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~~------ 154 (251)
T d2c07a1 81 ILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGNV------ 154 (251)
T ss_dssp HHHHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCT------
T ss_pred HHHhcCCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCHHhcCCCC------
Confidence 789999999852 223345688999999999999999988753 457899999988765321
Q ss_pred eeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCC
Q 023515 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY 223 (281)
Q Consensus 147 ~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~ 223 (281)
....|+.+|++.+.+++.++.++ |+++++|.||.+.++..... ............|
T Consensus 155 ----------------~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~V~PG~v~T~~~~~~---~~~~~~~~~~~~p-- 213 (251)
T d2c07a1 155 ----------------GQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKI---SEQIKKNIISNIP-- 213 (251)
T ss_dssp ----------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----C---CHHHHHHHHTTCT--
T ss_pred ----------------CCHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCEeccccccc---CHHHHHHHHhcCC--
Confidence 12459999999999999998864 89999999999998764332 2222333333221
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCC--CCccEEEecCCCC
Q 023515 224 PNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVERVSH 261 (281)
Q Consensus 224 ~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~~~~t 261 (281)
...+..++|+|.++.+++.... -.|+.+..++.+|
T Consensus 214 ---l~R~~~pedvA~~v~fL~S~~s~~itG~~i~vDGG~s 250 (251)
T d2c07a1 214 ---AGRMGTPEEVANLACFLSSDKSGYINGRVFVIDGGLS 250 (251)
T ss_dssp ---TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSC
T ss_pred ---CCCCcCHHHHHHHHHHHhCchhCCCcCcEEEECCCcC
Confidence 2237799999999999997543 3676655554443
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.96 E-value=5.9e-29 Score=200.31 Aligned_cols=212 Identities=14% Similarity=0.145 Sum_probs=158.0
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++|++|||||+++||+++++.|+++|++|++++|+.+.. .++..+++|++|+++++++++
T Consensus 4 sl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~-------------~~~~~~~~Dv~~~~~v~~~~~~~~~~ 70 (237)
T d1uzma1 4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP-------------KGLFGVEVDVTDSDAVDRAFTAVEEH 70 (237)
T ss_dssp CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCC-------------TTSEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchh-------------cCceEEEEecCCHHHHHHHHHHHHHh
Confidence 37899999999999999999999999999999999987543 246778999999998887765
Q ss_pred --CCcEeEEeccc-----CCCCCCCccchhhhhHHHHHHHHHHHhhhC---CCccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 --GCDGVCHTASP-----FYHDAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 --~~d~Vih~a~~-----~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|++|||||. +.+...+.|++.+++|+.++..+.+++.+. .+.+++|++||..+..+.+
T Consensus 71 ~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Iv~isS~~~~~~~~---------- 140 (237)
T d1uzma1 71 QGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGIG---------- 140 (237)
T ss_dssp HSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC---------------
T ss_pred cCCceEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCCCceEEEcchhhccCCc----------
Confidence 68999999985 223345668899999999999999888765 2456899999988765321
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
....|+.+|++.+.+++.++.++ |+++.+|.||.+.++..... . ....+......+ .
T Consensus 141 ------------~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~~---~-~~~~~~~~~~~p----l 200 (237)
T d1uzma1 141 ------------NQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRAL---D-ERIQQGALQFIP----A 200 (237)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHS---C-HHHHHHHGGGCT----T
T ss_pred ------------ccHHHHHHHHHHHHHHHHHHhhhhcCCceeeeeeeCcCCChhhhcc---C-HHHHHHHHhcCC----C
Confidence 12459999999999999998864 89999999999987642211 1 112222221111 2
Q ss_pred ccceeHHHHHHHHHHhhcCCC--CCccEEEecCCC
Q 023515 228 FGWVNVKDVANAHIQAFEVPS--ANGRYCLVERVS 260 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~~~~ 260 (281)
..+..++|+|.++.+++.... -.|+.+..++.+
T Consensus 201 ~R~~~pedvA~~v~fL~S~~s~~itG~~i~vdGG~ 235 (237)
T d1uzma1 201 KRVGTPAEVAGVVSFLASEDASYISGAVIPVDGGM 235 (237)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred CCCcCHHHHHHHHHHHhCchhcCCcCCeEEECCCC
Confidence 236799999999999997543 357555554433
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=3.5e-29 Score=202.50 Aligned_cols=217 Identities=16% Similarity=0.195 Sum_probs=165.0
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++|+++||||+++||+++++.|+++|++|++++|++++.+.+.++. ..+..++++|++|+++++++++
T Consensus 2 l~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 76 (243)
T d1q7ba_ 2 FEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYL-----GANGKGLMLNVTDPASIESVLEKIRAEF 76 (243)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-----GGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHh-----CCCCcEEEEEecCHHHhhhhhhhhhccc
Confidence 67999999999999999999999999999999999876555544332 2467889999999988887775
Q ss_pred -CCcEeEEeccc-----CCCCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 -GCDGVCHTASP-----FYHDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 -~~d~Vih~a~~-----~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
++|++|||||. +.+...+.|+..+++|+.++..+.+++.+.+ +..++|++||..+..+.+
T Consensus 77 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~~~----------- 145 (243)
T d1q7ba_ 77 GEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNG----------- 145 (243)
T ss_dssp CSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCT-----------
T ss_pred CCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecchhhcCCCC-----------
Confidence 68999999985 2233456688999999999999999998763 346899999988765321
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCc
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (281)
....|+.+|.+.+.+++.++.++ |+++++|.||.+.++..... ............| ..
T Consensus 146 -----------~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~---~~~~~~~~~~~~p-----l~ 206 (243)
T d1q7ba_ 146 -----------GQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRAL---SDDQRAGILAQVP-----AG 206 (243)
T ss_dssp -----------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTS---CHHHHHHHHTTCT-----TS
T ss_pred -----------CCHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecceEechhhhhh---hhhHHHHHHhcCC-----CC
Confidence 12459999999999999998864 89999999999987653221 1122222222211 22
Q ss_pred cceeHHHHHHHHHHhhcCCC--CCccEEEecC
Q 023515 229 GWVNVKDVANAHIQAFEVPS--ANGRYCLVER 258 (281)
Q Consensus 229 ~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~~ 258 (281)
.+..++|+|.++.+++.... -.|+.+..++
T Consensus 207 R~~~pedvA~~v~fL~S~~s~~itGq~i~vdG 238 (243)
T d1q7ba_ 207 RLGGAQEIANAVAFLASDEAAYITGETLHVNG 238 (243)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCCCHHHHHHHHHHHhCchhcCCcCCeEEECC
Confidence 36799999999999997543 3665555443
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=99.96 E-value=7.4e-29 Score=202.31 Aligned_cols=227 Identities=14% Similarity=0.125 Sum_probs=166.9
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++|+++||||+++||+++++.|+++|++|++.+|+.++.+.+...........++.++++|++|+++++++++
T Consensus 2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 81 (258)
T d1iy8a_ 2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF 81 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence 67999999999999999999999999999999999876655544433322233578899999999999888765
Q ss_pred -CCcEeEEecccCC------CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 -GCDGVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 -~~d~Vih~a~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|++|||||... +...+.|+..+++|+.++.++.+++.+.+ +..++|++||..+..+.+
T Consensus 82 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~---------- 151 (258)
T d1iy8a_ 82 GRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGIG---------- 151 (258)
T ss_dssp SCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSBCS----------
T ss_pred CCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCCcccccHhhccCCC----------
Confidence 7899999998521 22346688999999999999999987752 456899999987765321
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCC-----CCccHHHHHHHHhCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPT-----LNTSAAAVLSLIKGAQT 222 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~-----~~~~~~~~~~~~~~~~~ 222 (281)
....|+.+|.+.+.+++.++.++ |+++++|.||.+.+|..... ...............
T Consensus 152 ------------~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~-- 217 (258)
T d1iy8a_ 152 ------------NQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVN-- 217 (258)
T ss_dssp ------------SBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTTC--
T ss_pred ------------CchHHHHHHHHHHHHHHHHHHHhCccCceEEEEeeCcccCHHHHHHHhhcCcccHHHHHHHHHhcC--
Confidence 12459999999999999998864 89999999999987642100 000111122222211
Q ss_pred CCCCCccceeHHHHHHHHHHhhcCCC--CCccEEEecCCC
Q 023515 223 YPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVERVS 260 (281)
Q Consensus 223 ~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~~~~ 260 (281)
....+..++|+|.++++++.... -.|+.+..++..
T Consensus 218 ---pl~R~~~p~dvA~~v~fL~S~~s~~itG~~i~VDGG~ 254 (258)
T d1iy8a_ 218 ---PSKRYGEAPEIAAVVAFLLSDDASYVNATVVPIDGGQ 254 (258)
T ss_dssp ---TTCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTT
T ss_pred ---CCCCCcCHHHHHHHHHHHhCchhcCCcCceEEcCcch
Confidence 12336799999999999997543 367555554433
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=8e-29 Score=201.76 Aligned_cols=223 Identities=15% Similarity=0.099 Sum_probs=167.2
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++|++|||||+++||++++++|+++|++|++++|+.++.+.+.++.+.. ..++.++++|++++++++++++
T Consensus 8 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~--g~~~~~~~~Dvs~~~~~~~~~~~~~~~ 85 (255)
T d1fmca_ 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL--GGQAFACRCDITSEQELSALADFAISK 85 (255)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHc--CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999876655554443332 2578899999999988887765
Q ss_pred --CCcEeEEecccCC----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 --GCDGVCHTASPFY----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 --~~d~Vih~a~~~~----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
++|++|||||... +...+.|+..+++|+.++..+.+.+.+++ +..++|++||..+..+.+
T Consensus 86 ~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Ii~isS~~~~~~~~----------- 154 (255)
T d1fmca_ 86 LGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNI----------- 154 (255)
T ss_dssp HSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCT-----------
T ss_pred cCCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccccchhcccc-----------
Confidence 7899999998632 22345688999999999999999888752 345799999987765221
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCc
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (281)
....|+.+|.+.+.+++.++.++ |+++++|.||.|.+|...... ............| ..
T Consensus 155 -----------~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~--~~e~~~~~~~~~p-----l~ 216 (255)
T d1fmca_ 155 -----------NMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVI--TPEIEQKMLQHTP-----IR 216 (255)
T ss_dssp -----------TCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTC--CHHHHHHHHHTCS-----SC
T ss_pred -----------ccccchhHHHHHHHHHHHHHHHhCccCeEEEEeeeCcCcChHhhccC--CHHHHHHHHhcCC-----CC
Confidence 12459999999999999998764 899999999999887532221 1223333333221 22
Q ss_pred cceeHHHHHHHHHHhhcCCC--CCccEE-EecCC
Q 023515 229 GWVNVKDVANAHIQAFEVPS--ANGRYC-LVERV 259 (281)
Q Consensus 229 ~~i~~~D~a~~i~~~~~~~~--~~g~~~-~~~~~ 259 (281)
.+..++|+|.++.+++.... -.|+.+ +.|+.
T Consensus 217 R~g~pedvA~~v~fL~S~~s~~itG~~i~vDGG~ 250 (255)
T d1fmca_ 217 RLGQPQDIANAALFLCSPAASWVSGQILTVSGGG 250 (255)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred CCcCHHHHHHHHHHHhCchhcCCcCCEEEECcCc
Confidence 36799999999999997543 367554 44443
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.96 E-value=3.8e-28 Score=196.25 Aligned_cols=218 Identities=17% Similarity=0.108 Sum_probs=161.8
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++|+++||||+++||++++++|+++|++|++++|+.++.+.+.+. .++.++++|++|+++++++++
T Consensus 2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~-------~~~~~~~~Dv~~~~~v~~~~~~~~~~ 74 (242)
T d1ulsa_ 2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEA-------VGAHPVVMDVADPASVERGFAEALAH 74 (242)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT-------TTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------cCCeEEEEecCCHHHHHHHHHHHHHh
Confidence 37799999999999999999999999999999999986544333222 257889999999998888765
Q ss_pred --CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 --GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 --~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|++|||||... +...+.|+..+++|+.++..+.+++.+.+ +...++++||. ...+.+
T Consensus 75 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~~~ss~-~~~~~~---------- 143 (242)
T d1ulsa_ 75 LGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASR-VYLGNL---------- 143 (242)
T ss_dssp HSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCG-GGGCCT----------
T ss_pred cCCceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccccceeeeeccc-cccCCC----------
Confidence 6899999998632 33456688999999999999999998753 34467777764 332111
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
....|+.+|.+.+.+.+.++.++ |+++++|.||.|.+|..... ......+.....| .
T Consensus 144 ------------~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~---~~~~~~~~~~~~p-----l 203 (242)
T d1ulsa_ 144 ------------GQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAKV---PEKVREKAIAATP-----L 203 (242)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSSS---CHHHHHHHHHTCT-----T
T ss_pred ------------CCcchHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCcccChhhhcC---CHHHHHHHHhcCC-----C
Confidence 12459999999999999998864 89999999999998864432 2222233333221 2
Q ss_pred ccceeHHHHHHHHHHhhcCCC--CCccEEEecCCCC
Q 023515 228 FGWVNVKDVANAHIQAFEVPS--ANGRYCLVERVSH 261 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~~~~t 261 (281)
..+..++|+|.++.+++.... -.|+.+..++.++
T Consensus 204 ~R~~~pedia~~v~fL~S~~s~~itG~~i~vDGG~t 239 (242)
T d1ulsa_ 204 GRAGKPLEVAYAALFLLSDESSFITGQVLFVDGGRT 239 (242)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred CCCCCHHHHHHHHHHHhchhhCCCCCcEEEECCCcc
Confidence 236799999999999997543 3676665555444
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=99.96 E-value=3e-28 Score=200.15 Aligned_cols=227 Identities=18% Similarity=0.199 Sum_probs=168.1
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++|++|||||+++||+++++.|+++|++|++++|+.++.+.+...... ...+.++++|++|+++++++++
T Consensus 3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (268)
T d2bgka1 3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS---PDVISFVHCDVTKDEDVRNLVDTTIAK 79 (268)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC---CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 36799999999999999999999999999999999987655544433322 2468889999999998888775
Q ss_pred --CCcEeEEecccCCC-------CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCee
Q 023515 81 --GCDGVCHTASPFYH-------DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVV 148 (281)
Q Consensus 81 --~~d~Vih~a~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (281)
++|++|||||.... ...+.|+..+++|+.++..+.+++.+.+ +..++|++||..+..+..+
T Consensus 80 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~ii~iss~~~~~~~~~------- 152 (268)
T d2bgka1 80 HGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGEG------- 152 (268)
T ss_dssp HSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCCTT-------
T ss_pred cCCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCCCCccccccccccccccc-------
Confidence 78999999985221 1234577899999999999999998753 4468999999877642210
Q ss_pred eecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC-CCCC
Q 023515 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA-QTYP 224 (281)
Q Consensus 149 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~-~~~~ 224 (281)
....|+.+|++.+.+++.++.++ |+++++|.||.+.+|.................... +.
T Consensus 153 --------------~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~-- 216 (268)
T d2bgka1 153 --------------VSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAANL-- 216 (268)
T ss_dssp --------------SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHTCSS--
T ss_pred --------------cccccchhHHHHHhCHHHHHHHhChhCeEEEecCCCCccChHHhhhhcCCHHHHHHHHHhcccc--
Confidence 11249999999999999998764 89999999999999875544333333333322211 11
Q ss_pred CCCccceeHHHHHHHHHHhhcCCC--CCccEEEecCCC
Q 023515 225 NVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVERVS 260 (281)
Q Consensus 225 ~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~~~~ 260 (281)
...+..++|+|+++++++.... -.|+.+..++.+
T Consensus 217 --~gr~~~pedvA~~v~fL~S~~s~~itGq~i~VDGG~ 252 (268)
T d2bgka1 217 --KGTLLRAEDVADAVAYLAGDESKYVSGLNLVIDGGY 252 (268)
T ss_dssp --CSCCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred --CCCCcCHHHHHHHHHHHhChhhCCccCceEEECcCc
Confidence 1236789999999999997543 367655554433
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=99.96 E-value=3.8e-28 Score=196.89 Aligned_cols=222 Identities=13% Similarity=0.082 Sum_probs=157.8
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
++++|+++||||+++||+++++.|+++|++|++.+|++.+. .+.+.+.. ..++.++++|++|+++++++++
T Consensus 2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~--~~~~~~~~--g~~~~~~~~Dvs~~~~v~~~~~~~~~~ 77 (247)
T d2ew8a1 2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPE--AEAAIRNL--GRRVLTVKCDVSQPGDVEAFGKQVIST 77 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHH--HHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHH--HHHHHHHc--CCcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 36799999999999999999999999999999999976432 22222222 2578999999999998888765
Q ss_pred --CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 --GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 --~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|++|||||... +...+.|+..+++|+.++..+.+++.+.+ +..++|++||..+..+.+
T Consensus 78 ~G~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~~---------- 147 (247)
T d2ew8a1 78 FGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKIE---------- 147 (247)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCCS----------
T ss_pred cCCCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCccccccchhcccCc----------
Confidence 7899999998622 33456788999999999999999998753 446899999987754221
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
....|+.||++.+.+++.++.++ |+++++|.||.+.+|....... .......... ....
T Consensus 148 ------------~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~--~~~~~~~~~~----~~~l 209 (247)
T d2ew8a1 148 ------------AYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEASAL--SAMFDVLPNM----LQAI 209 (247)
T ss_dssp ------------SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC--------------------CT----TSSS
T ss_pred ------------ccccchhhhccHHHHHHHHHHHhcccCeEEEEEeeCCCCCcccccccc--chhHHHHHHH----hccC
Confidence 12459999999999999998864 8999999999998876432110 0000111110 1112
Q ss_pred ccceeHHHHHHHHHHhhcCCC--CCccEEEecCC
Q 023515 228 FGWVNVKDVANAHIQAFEVPS--ANGRYCLVERV 259 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~~~ 259 (281)
..+..++|+|+++++++.... -.|+.+..++.
T Consensus 210 ~r~~~pedvA~~v~fL~S~~s~~itG~~i~vDGG 243 (247)
T d2ew8a1 210 PRLQVPLDLTGAAAFLASDDASFITGQTLAVDGG 243 (247)
T ss_dssp CSCCCTHHHHHHHHHHTSGGGTTCCSCEEEESSS
T ss_pred CCCCCHHHHHHHHHHHhCchhcCCcCCeEEECCC
Confidence 236789999999999997543 35655544433
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.9e-28 Score=198.37 Aligned_cols=219 Identities=19% Similarity=0.130 Sum_probs=165.2
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---CCc
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---GCD 83 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---~~d 83 (281)
+++|++|||||+++||+++++.|+++|++|++++|+.++.+.+..+. .++.++++|++|.++++++++ ++|
T Consensus 5 L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~d~~~v~~~~~~~g~iD 78 (244)
T d1pr9a_ 5 LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC------PGIEPVCVDLGDWEATERALGSVGPVD 78 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTTCCCCC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHHHHhCCce
Confidence 68999999999999999999999999999999999865544433321 357889999999999998887 789
Q ss_pred EeEEecccC-----CCCCCCccchhhhhHHHHHHHHHHHhhhC----CCccEEEEeccceeeecCCCCCCCCeeeecCCC
Q 023515 84 GVCHTASPF-----YHDAKDPQVELLDPAVKGTLNVLNSCAKF----PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWF 154 (281)
Q Consensus 84 ~Vih~a~~~-----~~~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~ 154 (281)
++||||+.. .+...+.|+..+++|+.++..+.+++.+. .+..++|++||..+..+.+
T Consensus 79 ilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~~-------------- 144 (244)
T d1pr9a_ 79 LLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVT-------------- 144 (244)
T ss_dssp EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCT--------------
T ss_pred EEEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeeccccccccccc--------------
Confidence 999999852 23345668899999999999999988763 2457899999987754221
Q ss_pred CChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccce
Q 023515 155 SDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWV 231 (281)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 231 (281)
....|+.+|++.+.+++.++.++ |+++++|.||.|.+|....... ............| ...+.
T Consensus 145 --------~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~~~-~~~~~~~~~~~~p-----l~R~~ 210 (244)
T d1pr9a_ 145 --------NHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWS-DPHKAKTMLNRIP-----LGKFA 210 (244)
T ss_dssp --------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHTTSC-SHHHHHHHHTTCT-----TCSCB
T ss_pred --------chhhhhhhHHHHHHHHHHHHHHhCCCcEEEEEEeeCcCcChHHhhhcc-ChHHHHHHHhcCC-----CCCCc
Confidence 12459999999999999998864 8999999999998875322211 1222333333221 22377
Q ss_pred eHHHHHHHHHHhhcCCC--CCccEEEecCC
Q 023515 232 NVKDVANAHIQAFEVPS--ANGRYCLVERV 259 (281)
Q Consensus 232 ~~~D~a~~i~~~~~~~~--~~g~~~~~~~~ 259 (281)
.++|+|+++.+++.... -.|+.+..++.
T Consensus 211 ~peevA~~v~fL~S~~a~~itG~~i~vDGG 240 (244)
T d1pr9a_ 211 EVEHVVNAILFLLSDRSGMTTGSTLPVEGG 240 (244)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CHHHHHHHHHHHhCchhCCcCCcEEEECcc
Confidence 99999999999997543 36755555443
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=99.96 E-value=1.3e-28 Score=199.56 Aligned_cols=219 Identities=15% Similarity=0.093 Sum_probs=159.6
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++|++|||||+++||+++++.|+++|++|++.+|+++..+..+. .+..++++|++|.++++++++
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~--------~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 74 (248)
T d2d1ya1 3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEA--------IGGAFFQVDLEDERERVRFVEEAAYAL 74 (248)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHH--------HTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH--------cCCeEEEEeCCCHHHHHHHHHHHHHhc
Confidence 679999999999999999999999999999999998754332221 145678999999988887765
Q ss_pred -CCcEeEEecccC-----CCCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 -GCDGVCHTASPF-----YHDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 -~~d~Vih~a~~~-----~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
++|++|||||.. .+...+.|++.+++|+.++.++.+++.+.+ +..++|++||..+..+.+
T Consensus 75 G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~~~~~~----------- 143 (248)
T d2d1ya1 75 GRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAEQ----------- 143 (248)
T ss_dssp SCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSBCT-----------
T ss_pred CCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccccccccccccccccccccc-----------
Confidence 789999999852 223445688999999999999999998863 346899999988765321
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCC--CccHHHHHHHHhCCCCCCCC
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTL--NTSAAAVLSLIKGAQTYPNV 226 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 226 (281)
....|+.+|++.+.+++.++.++ |+++++|.||.+.+|...... ........+...... .
T Consensus 144 -----------~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~----p 208 (248)
T d2d1ya1 144 -----------ENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIALSPDPERTRRDWEDLH----A 208 (248)
T ss_dssp -----------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHC--------CHHHHTTS----T
T ss_pred -----------ccchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCchHHHHhhcCCCHHHHHHHHHhcC----C
Confidence 12459999999999999998874 899999999999876311000 000011111111111 1
Q ss_pred CccceeHHHHHHHHHHhhcCCC--CCccEEEecCC
Q 023515 227 TFGWVNVKDVANAHIQAFEVPS--ANGRYCLVERV 259 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~~~ 259 (281)
...+..++|+|.++.+++.... -.|+.+..++.
T Consensus 209 l~R~~~pedia~~v~fL~S~~s~~itG~~i~vDGG 243 (248)
T d2d1ya1 209 LRRLGKPEEVAEAVLFLASEKASFITGAILPVDGG 243 (248)
T ss_dssp TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCCcCHHHHHHHHHHHhCchhcCCCCcEEEcCcC
Confidence 2337799999999999997543 36755544433
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.96 E-value=3.2e-28 Score=196.62 Aligned_cols=211 Identities=17% Similarity=0.144 Sum_probs=161.2
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++|+++||||+++||+++++.|+++|++|++.+|++++.+.+.+.. ..++.++++|++|+++++++++
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 78 (244)
T d1nffa_ 4 LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL-----ADAARYVHLDVTQPAQWKAAVDTAVTAF 78 (244)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT-----GGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----hCcceEEEeecCCHHHHHHHHHHHHHHh
Confidence 67999999999999999999999999999999999876554443332 2468899999999998887775
Q ss_pred -CCcEeEEecccC-----CCCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 -GCDGVCHTASPF-----YHDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 -~~d~Vih~a~~~-----~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
++|++|||||.. .+...+.|++.+++|+.+++.+.+.+.+.+ +..++|++||..+..+.+
T Consensus 79 g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~----------- 147 (244)
T d1nffa_ 79 GGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTV----------- 147 (244)
T ss_dssp SCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT-----------
T ss_pred CCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEeccccccccccc-----------
Confidence 689999999862 233446688999999999999999887653 446899999987765221
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCc
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (281)
....|+.+|++.+.+++.++.++ |+++++|.||.+.+|....... ... .....
T Consensus 148 -----------~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~-----------~~~--~~pl~ 203 (244)
T d1nffa_ 148 -----------ACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWVPE-----------DIF--QTALG 203 (244)
T ss_dssp -----------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGTTSCT-----------TCS--CCSSS
T ss_pred -----------cccchhhHHHHHHHHHHHHHHHhcccCEEEEEEeeCCccChhHhhhhH-----------HHH--hcccc
Confidence 12459999999999999999864 8999999999998875321110 000 01122
Q ss_pred cceeHHHHHHHHHHhhcCCC--CCccEEEec
Q 023515 229 GWVNVKDVANAHIQAFEVPS--ANGRYCLVE 257 (281)
Q Consensus 229 ~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~ 257 (281)
.+..++|+|+++.+++.... -.|+.+..+
T Consensus 204 R~~~p~diA~~v~fL~s~~s~~itG~~i~vD 234 (244)
T d1nffa_ 204 RAAEPVEVSNLVVYLASDESSYSTGAEFVVD 234 (244)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEES
T ss_pred CCCCHHHHHHHHHHHhChhhCCCcCCEEEEC
Confidence 37899999999999997543 357544443
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=99.95 E-value=1.8e-28 Score=200.29 Aligned_cols=224 Identities=16% Similarity=0.124 Sum_probs=166.2
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
++++|++|||||+++||+++++.|+++|++|++.+|+.++.+.+..+.... ..++.++++|++|+++++++++
T Consensus 5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (259)
T d2ae2a_ 5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSK--GFKVEASVCDLSSRSERQELMNTVANH 82 (259)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCCceEEEeeCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999876655544433222 2578899999999988777653
Q ss_pred ---CCcEeEEecccC-----CCCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeee
Q 023515 81 ---GCDGVCHTASPF-----YHDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (281)
Q Consensus 81 ---~~d~Vih~a~~~-----~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (281)
++|++|||||.. .+...+.|+..+++|+.++..+.+++.+.+ +..++|++||..+..+.+
T Consensus 83 ~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~--------- 153 (259)
T d2ae2a_ 83 FHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAVP--------- 153 (259)
T ss_dssp TTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTSCCT---------
T ss_pred hCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhcccccccccccccccccc---------
Confidence 489999999852 233445688999999999999999988752 457899999987754221
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCc--cHHHHHHHHhCCCCCC
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNT--SAAAVLSLIKGAQTYP 224 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~--~~~~~~~~~~~~~~~~ 224 (281)
....|+.+|.+.+.+++.++.++ |+++++|.||.|.+|........ ....+.+.....|
T Consensus 154 -------------~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~p--- 217 (259)
T d2ae2a_ 154 -------------YEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCA--- 217 (259)
T ss_dssp -------------TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHTST---
T ss_pred -------------cccchHHHHHHHHHHHHHHHHHhCcCceEEEEeeeCcccCHHHHhhhhchhhHHHHHHHHhcCC---
Confidence 12459999999999999999875 89999999999987642211111 1122233333221
Q ss_pred CCCccceeHHHHHHHHHHhhcCCC--CCccEEEecC
Q 023515 225 NVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVER 258 (281)
Q Consensus 225 ~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~~ 258 (281)
...+..++|+|.++++++.... -.|+.+..++
T Consensus 218 --l~R~g~pedvA~~v~fL~S~~s~~itG~~i~VDG 251 (259)
T d2ae2a_ 218 --LRRMGEPKELAAMVAFLCFPAASYVTGQIIYVDG 251 (259)
T ss_dssp --TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred --CCCCcCHHHHHHHHHHHhCchhCCCcCcEEEECC
Confidence 2236799999999999997543 3576555543
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.95 E-value=1.7e-28 Score=200.29 Aligned_cols=224 Identities=13% Similarity=0.113 Sum_probs=153.4
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
++++|++|||||+++||+++++.|+++|++|++++|+.++.+.+....... ..++.++.+|++++++++++++
T Consensus 5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (259)
T d1xq1a_ 5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKK--GFQVTGSVCDASLRPEREKLMQTVSSM 82 (259)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCceEEEeccCCCHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999876655544433222 2478999999999988777653
Q ss_pred ---CCcEeEEeccc-----CCCCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeee
Q 023515 81 ---GCDGVCHTASP-----FYHDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (281)
Q Consensus 81 ---~~d~Vih~a~~-----~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (281)
.+|++|||||. +.+...+.|+..+++|+.++..+++++.+.+ +..++|++||..+..+.+
T Consensus 83 ~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~~--------- 153 (259)
T d1xq1a_ 83 FGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSAS--------- 153 (259)
T ss_dssp HTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC------------------
T ss_pred hCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhccccccccccccccccccccccc---------
Confidence 48999999985 2233456688999999999999999998753 456899999987765221
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCC
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (281)
....|+.+|.+.+.+++.++.++ |+++++|.||.|.+|....... ....+...... +
T Consensus 154 -------------~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~V~PG~i~T~~~~~~~~---~~~~~~~~~~~--p-- 213 (259)
T d1xq1a_ 154 -------------VGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVYD---DEFKKVVISRK--P-- 213 (259)
T ss_dssp --------------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC----------------------------
T ss_pred -------------ccccccccccchhhhhHHHHHHhcccCeEEEEeccCcccCHHhhhhch---HHHHHHHHhCC--C--
Confidence 12459999999999999998864 8999999999998876432111 11111111110 1
Q ss_pred CccceeHHHHHHHHHHhhcCCC--CCccEEEecCCC
Q 023515 227 TFGWVNVKDVANAHIQAFEVPS--ANGRYCLVERVS 260 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~~~~ 260 (281)
...+..++|+|.++++++.... -.|+.+..++.+
T Consensus 214 l~R~~~pedvA~~v~fL~S~~s~~iTG~~i~vDGG~ 249 (259)
T d1xq1a_ 214 LGRFGEPEEVSSLVAFLCMPAASYITGQTICVDGGL 249 (259)
T ss_dssp ----CCGGGGHHHHHHHTSGGGTTCCSCEEECCCCE
T ss_pred CCCCcCHHHHHHHHHHHhCchhcCCcCcEEEeCCCE
Confidence 1236789999999999997543 356555554433
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=99.95 E-value=7.8e-29 Score=202.76 Aligned_cols=229 Identities=17% Similarity=0.140 Sum_probs=162.2
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC-CcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN-DPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
++++|++|||||+++||++++++|+++|++|++.+|+.. ..+.+....... ...++.++++|++|+++++++++
T Consensus 1 ~L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~-~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 79 (260)
T d1x1ta1 1 MLKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQ-HGVKVLYDGADLSKGEAVRGLVDNAVR 79 (260)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHH-HTSCEEEECCCTTSHHHHHHHHHHHHH
T ss_pred CCCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHh-cCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 367999999999999999999999999999999999753 233333222111 12478899999999998888775
Q ss_pred ---CCcEeEEecccC-----CCCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeee
Q 023515 81 ---GCDGVCHTASPF-----YHDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (281)
Q Consensus 81 ---~~d~Vih~a~~~-----~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (281)
++|++|||||.. .+...+.|+..+++|+.++.++++++.+.+ +..++|++||..+..+.+
T Consensus 80 ~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~~--------- 150 (260)
T d1x1ta1 80 QMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVASA--------- 150 (260)
T ss_dssp HHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT---------
T ss_pred HhCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeecccccceeccC---------
Confidence 689999999862 233456688999999999999999988763 346899999988765321
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccH--------HHHHHHHh
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSA--------AAVLSLIK 218 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~--------~~~~~~~~ 218 (281)
....|+.+|++.+.+++.++.++ |+++++|.||.|.+|.......... ....+...
T Consensus 151 -------------~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (260)
T d1x1ta1 151 -------------NKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLS 217 (260)
T ss_dssp -------------TCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC------------------------CHH
T ss_pred -------------CcchhhhhhhhHHHhHHHHHHHhchhCcEEEEEecCCCCChhhhhhhhhhhhhcCCChHHHHHHHHH
Confidence 12459999999999999998864 8999999999998876432211000 00000000
Q ss_pred CCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCccEEEecCCCC
Q 023515 219 GAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVERVSH 261 (281)
Q Consensus 219 ~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~~~~t 261 (281)
.. .....+..++|+|.++++++.... -.|+.+..++.+|
T Consensus 218 ~~----~Pl~R~g~pediA~~v~fL~S~~a~~itG~~i~vDGG~t 258 (260)
T d1x1ta1 218 EK----QPSLQFVTPEQLGGTAVFLASDAAAQITGTTVSVDGGWT 258 (260)
T ss_dssp HH----CTTCCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred hc----CCCCCCcCHHHHHHHHHHHhChhhCCCcCCEEEECcchh
Confidence 00 012237799999999999997543 3676655554444
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=2.3e-28 Score=198.32 Aligned_cols=221 Identities=18% Similarity=0.188 Sum_probs=164.6
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++|++|||||+++||+++++.|+++|++|++++|+++..+.+.++. .++.++++|++|+++++++++
T Consensus 3 rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~------~~~~~~~~Dvs~~~~v~~~~~~~~~~ 76 (250)
T d1ydea1 3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL------PGAVFILCDVTQEDDVKTLVSETIRR 76 (250)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC------TTEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc------CCCeEEEccCCCHHHHHHHHHHHHHh
Confidence 467999999999999999999999999999999999865544443331 468899999999998888775
Q ss_pred --CCcEeEEecccCC------CCCCCccchhhhhHHHHHHHHHHHhhhCC--CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 --GCDGVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 --~~d~Vih~a~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|++|||||... +...+.|+..+++|+.++.++.+++.+.+ +..++|++||..+..+.+
T Consensus 77 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~isS~~~~~~~~---------- 146 (250)
T d1ydea1 77 FGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAIGQA---------- 146 (250)
T ss_dssp HSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHHCCT----------
T ss_pred cCCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCccccccccccccc----------
Confidence 6899999998522 22345588999999999999999999864 236899999988765221
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCC---CCCCccHHHHHHHHhCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQ---PTLNTSAAAVLSLIKGAQTYP 224 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~---~~~~~~~~~~~~~~~~~~~~~ 224 (281)
....|+.+|.+.+.+++.++.++ |+++++|.||.|.+|... .........+.+.....|
T Consensus 147 ------------~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~p--- 211 (250)
T d1ydea1 147 ------------QAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQP--- 211 (250)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHHTST---
T ss_pred ------------CcchhHHHHhhHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHHhhcCCCHHHHHHHHHhcCC---
Confidence 12459999999999999999864 899999999999876421 111112223333333221
Q ss_pred CCCccceeHHHHHHHHHHhhcCC-CCCccEEEecCC
Q 023515 225 NVTFGWVNVKDVANAHIQAFEVP-SANGRYCLVERV 259 (281)
Q Consensus 225 ~~~~~~i~~~D~a~~i~~~~~~~-~~~g~~~~~~~~ 259 (281)
...+..++|+|.++.+++.+. .-.|+.+..++.
T Consensus 212 --l~R~g~p~eva~~v~fL~Sda~~itG~~i~vDGG 245 (250)
T d1ydea1 212 --LGRMGQPAEVGAAAVFLASEANFCTGIELLVTGG 245 (250)
T ss_dssp --TSSCBCHHHHHHHHHHHHHHCTTCCSCEEEESTT
T ss_pred --CCCCCCHHHHHHHHHHHhCccCCCcCCeEEECCC
Confidence 234779999999999998632 225655544433
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=1.8e-28 Score=198.12 Aligned_cols=218 Identities=19% Similarity=0.137 Sum_probs=162.7
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---CCc
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---GCD 83 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---~~d 83 (281)
+++|++|||||+++||++++++|+++|++|++++|+.++...+.++. .++.++++|++|+++++++++ ++|
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~~~~~v~~~~~~~g~iD 76 (242)
T d1cyda_ 3 FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC------PGIEPVCVDLGDWDATEKALGGIGPVD 76 (242)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTTCCCCS
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHHHHcCCCe
Confidence 78999999999999999999999999999999999875544433321 357889999999999999887 689
Q ss_pred EeEEecccC-----CCCCCCccchhhhhHHHHHHHHHHHhhhC----CCccEEEEeccceeeecCCCCCCCCeeeecCCC
Q 023515 84 GVCHTASPF-----YHDAKDPQVELLDPAVKGTLNVLNSCAKF----PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWF 154 (281)
Q Consensus 84 ~Vih~a~~~-----~~~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~ 154 (281)
++|||||.. .....+.|+..+++|+.++.++.+++.+. ....++|++||..+..+.+
T Consensus 77 ilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~-------------- 142 (242)
T d1cyda_ 77 LLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFP-------------- 142 (242)
T ss_dssp EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCT--------------
T ss_pred EEEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccccCC--------------
Confidence 999999852 23345668899999999999999987753 2346899999986654211
Q ss_pred CChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccce
Q 023515 155 SDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWV 231 (281)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 231 (281)
....|+.+|.+.+.+++.++.++ |+++++|.||.+.+|...... .............| ...+.
T Consensus 143 --------~~~~Y~asKaal~~lt~~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~-~~~~~~~~~~~~~p-----l~R~~ 208 (242)
T d1cyda_ 143 --------NLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVS-ADPEFARKLKERHP-----LRKFA 208 (242)
T ss_dssp --------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHT-CCHHHHHHHHHHST-----TSSCB
T ss_pred --------ccccccchHHHHHHHHHHHHHHhCccCeecccCCCCCccCHHHHhhc-CCHHHHHHHHhcCC-----CCCCc
Confidence 12459999999999999998864 899999999999876421111 11222333322221 23377
Q ss_pred eHHHHHHHHHHhhcCCC--CCccEEEecC
Q 023515 232 NVKDVANAHIQAFEVPS--ANGRYCLVER 258 (281)
Q Consensus 232 ~~~D~a~~i~~~~~~~~--~~g~~~~~~~ 258 (281)
.++|+|+++.+++.... -.|+.+..++
T Consensus 209 ~peeva~~v~fL~S~~s~~itG~~i~vDG 237 (242)
T d1cyda_ 209 EVEDVVNSILFLLSDRSASTSGGGILVDA 237 (242)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSSEEEEST
T ss_pred CHHHHHHHHHHHhCchhcCcCCceEEeCc
Confidence 99999999999997543 3565544443
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=99.95 E-value=4.5e-28 Score=198.03 Aligned_cols=221 Identities=19% Similarity=0.147 Sum_probs=164.8
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++|+++||||+++||+++++.|+++|++|++++|+.++.+.+....+.. ..++.++++|++|+++++++++
T Consensus 2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (260)
T d1zema1 2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK--GVEARSYVCDVTSEEAVIGTVDSVVRD 79 (260)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT--TSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 367999999999999999999999999999999999876655554443322 3578999999999988888775
Q ss_pred --CCcEeEEecccCC------CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeee
Q 023515 81 --GCDGVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (281)
Q Consensus 81 --~~d~Vih~a~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (281)
++|++|||||... +...+.|+..+++|+.++..+.+++.+.| +..++|++||..+..+.+
T Consensus 80 ~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~~~--------- 150 (260)
T d1zema1 80 FGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPP--------- 150 (260)
T ss_dssp HSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSCCT---------
T ss_pred hCCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCCCCCeeechhhccCCc---------
Confidence 7899999998532 23345688999999999999999998753 456899999988765321
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCC------------CCCCccHHHHH
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQ------------PTLNTSAAAVL 214 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~------------~~~~~~~~~~~ 214 (281)
....|+.+|.+.+.+++.++.++ |+++++|.||.|.++... .........+.
T Consensus 151 -------------~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (260)
T d1zema1 151 -------------NMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVA 217 (260)
T ss_dssp -------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHH
T ss_pred -------------chHHHHHHHHHHHHHHHHHHHHhhhhCCEEEEeccCcccCcchhhcchhhhhhhcccccccCHHHHH
Confidence 12459999999999999998875 899999999999886411 01111122222
Q ss_pred H-HHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCccEEE
Q 023515 215 S-LIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCL 255 (281)
Q Consensus 215 ~-~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~ 255 (281)
+ +....| ...+..++|+|.++++++.... -.|+.+.
T Consensus 218 ~~~~~~~P-----l~R~g~pedvA~~v~fL~S~~s~~itG~~i~ 256 (260)
T d1zema1 218 QQMIGSVP-----MRRYGDINEIPGVVAFLLGDDSSFMTGVNLP 256 (260)
T ss_dssp HHHHHTST-----TSSCBCGGGSHHHHHHHHSGGGTTCCSCEEE
T ss_pred HHHHhcCC-----CCCCcCHHHHHHHHHHHhCchhcCccCCeEE
Confidence 2 222211 2236799999999999997543 2564433
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=99.95 E-value=4.5e-28 Score=197.89 Aligned_cols=225 Identities=14% Similarity=0.072 Sum_probs=163.9
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC-cchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
++++|+++||||+++||++++++|+++|++|++++|+.++ .+.+.++.+.. ..++.++++|++|+++++++++
T Consensus 4 dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~--g~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (261)
T d1geea_ 4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKV--GGEAIAVKGDVTVESDVINLVQSAIK 81 (261)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999998643 33333332222 2478899999999998888775
Q ss_pred ---CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---C-ccEEEEeccceeeecCCCCCCCCee
Q 023515 81 ---GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---S-IKRVVLTSSMAAVLNTGKPRTPDVV 148 (281)
Q Consensus 81 ---~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~-~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (281)
++|++|||||... +...+.|++.+++|+.++..+.+++.+.+ + ...+|++||..+..+.+
T Consensus 82 ~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~~~~-------- 153 (261)
T d1geea_ 82 EFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWP-------- 153 (261)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCCT--------
T ss_pred HhCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhcccCc--------
Confidence 7899999998632 23456688999999999999999988753 2 34589999987654211
Q ss_pred eecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCC
Q 023515 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (281)
Q Consensus 149 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (281)
....|+.+|.+.+.+++.++.++ |+++++|.||.|.+|...... ........... ..+
T Consensus 154 --------------~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~-~~~~~~~~~~~-~~p--- 214 (261)
T d1geea_ 154 --------------LFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKF-ADPEQRADVES-MIP--- 214 (261)
T ss_dssp --------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHH-HSHHHHHHHHT-TCT---
T ss_pred --------------cccccccCCccchhhHHHHHHHhhhhCcEEEEEeeCcCcCHhHhhhc-CCHHHHHHHHh-cCC---
Confidence 12459999999999999998864 899999999999887522100 01111122222 111
Q ss_pred CCccceeHHHHHHHHHHhhcCCC--CCccEEEecCCC
Q 023515 226 VTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVERVS 260 (281)
Q Consensus 226 ~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~~~~ 260 (281)
...+..++|+|+++.+++.... -.|+.+..++.+
T Consensus 215 -l~R~~~pediA~~v~fL~S~~s~~itG~~i~vDGG~ 250 (261)
T d1geea_ 215 -MGYIGEPEEIAAVAAWLASSEASYVTGITLFADGGM 250 (261)
T ss_dssp -TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred -CCCCCCHHHHHHHHHHHhCchhcCCcCCeEEECCCe
Confidence 1236799999999999997543 367555554443
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=99.95 E-value=8.6e-28 Score=195.96 Aligned_cols=227 Identities=14% Similarity=0.115 Sum_probs=165.6
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
++++|++|||||+++||++++++|+++|++|++++|++++.+.+.++.+.. ...+.++++|+++.++++++++
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~--~~~~~~~~~D~s~~~~~~~~~~~~~~~ 80 (258)
T d1ae1a_ 3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREK--GLNVEGSVCDLLSRTERDKLMQTVAHV 80 (258)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCCceEEEeecCCHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999999876655544443332 2578899999999988777654
Q ss_pred ---CCcEeEEecccC-----CCCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeee
Q 023515 81 ---GCDGVCHTASPF-----YHDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (281)
Q Consensus 81 ---~~d~Vih~a~~~-----~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (281)
.+|++||||+.. .+...+.|...+++|+.++..+.+++.+.+ +..++|++||..+..+.+
T Consensus 81 ~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~g~ii~isS~~~~~~~~--------- 151 (258)
T d1ae1a_ 81 FDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSALP--------- 151 (258)
T ss_dssp TTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSCCT---------
T ss_pred hCCCcEEEeccccccccCccccCCHHHHhhhhhhccccccccccccccccccccccccccccccccccccc---------
Confidence 479999999852 233456688999999999999999888652 457899999987754221
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCc---cHHHHHHHHhCCCCC
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNT---SAAAVLSLIKGAQTY 223 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~---~~~~~~~~~~~~~~~ 223 (281)
....|+.+|.+.+.+++.+++++ |+++.+|.||.+.+|........ ....+.++.... +
T Consensus 152 -------------~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~-p- 216 (258)
T d1ae1a_ 152 -------------SVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKT-P- 216 (258)
T ss_dssp -------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHHHHS-T-
T ss_pred -------------cchhHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeCcccCcchhhhhhhhhhhHHHHHHHHhcC-C-
Confidence 12459999999999999999874 89999999999998864322211 223333333321 1
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCC--CCccEEEecCCCC
Q 023515 224 PNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVERVSH 261 (281)
Q Consensus 224 ~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~~~~t 261 (281)
...+..++|+|.++.+++.... -.|+.+..++.+|
T Consensus 217 ---lgR~~~pediA~~v~fL~S~~s~~itG~~i~vDGG~s 253 (258)
T d1ae1a_ 217 ---MGRAGKPQEVSALIAFLCFPAASYITGQIIWADGGFT 253 (258)
T ss_dssp ---TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred ---CCCCcCHHHHHHHHHHHhChhhCCCcCcEEEeCCCee
Confidence 2237899999999999996433 3676665554443
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=99.95 E-value=3.1e-28 Score=197.84 Aligned_cols=227 Identities=15% Similarity=0.115 Sum_probs=165.9
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
++++|++|||||+++||+++++.|+++|++|++++|+.++............ ..++.++++|++|+++++++++
T Consensus 2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (251)
T d1vl8a_ 2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY-GVETMAFRCDVSNYEEVKKLLEAVKEK 80 (251)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh-CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999998765544333221111 2468899999999988888775
Q ss_pred --CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 --GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 --~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|++|||||... +...+.|+..+++|+.++..+.+++.+.+ +.+++|++||..+..... +
T Consensus 81 ~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~~~~~~~~-~-------- 151 (251)
T d1vl8a_ 81 FGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVTM-P-------- 151 (251)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCCCS-S--------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccchhccccC-c--------
Confidence 7899999998522 23456688999999999999999998863 346899999965432110 0
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
....|+.+|.+.+.+++.++.++ |+++.+|.||.+.++...... .............| .
T Consensus 152 ------------~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~T~~~~~~~-~~~~~~~~~~~~~p-----l 213 (251)
T d1vl8a_ 152 ------------NISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVF-SDPEKLDYMLKRIP-----L 213 (251)
T ss_dssp ------------SCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHH-TCHHHHHHHHHTCT-----T
T ss_pred ------------cccchHHHHHhHHHHHHHHHHHhcccCeEEEEEeeCcccCHHHHhcc-CCHHHHHHHHhcCC-----C
Confidence 12459999999999999998864 899999999999887632111 11222333333221 1
Q ss_pred ccceeHHHHHHHHHHhhcCCC--CCccEEEecCCC
Q 023515 228 FGWVNVKDVANAHIQAFEVPS--ANGRYCLVERVS 260 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~~~~ 260 (281)
..+..++|+|+++++++.... -.|+.+..++.+
T Consensus 214 ~R~~~pedvA~~v~fL~S~~a~~itG~~i~vDGG~ 248 (251)
T d1vl8a_ 214 GRTGVPEDLKGVAVFLASEEAKYVTGQIIFVDGGW 248 (251)
T ss_dssp SSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred CCCCCHHHHHHHHHHHhCchhCCCcCcEEEeCcCe
Confidence 236789999999999997543 367655555444
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.95 E-value=6.4e-28 Score=196.94 Aligned_cols=223 Identities=16% Similarity=0.103 Sum_probs=164.6
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------C
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------G 81 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~ 81 (281)
+|++|||||+++||+++++.|+++|++|++.+|++++.+.+.++.+.. ..++.++++|++|+++++++++ +
T Consensus 2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~--g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 79 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA--GVEADGRTCDVRSVPEIEALVAAVVERYGP 79 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 789999999999999999999999999999999876655554443332 2578999999999998888775 6
Q ss_pred CcEeEEeccc-----CCCCCCCccchhhhhHHHHHHHHHHHhhhCC-----CccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 82 CDGVCHTASP-----FYHDAKDPQVELLDPAVKGTLNVLNSCAKFP-----SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 82 ~d~Vih~a~~-----~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-----~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
+|++|||||. +.+...+.|++.+++|+.++.++.+++.+++ +..++|++||..+..+.+
T Consensus 80 iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~~~~~----------- 148 (257)
T d2rhca1 80 VDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVV----------- 148 (257)
T ss_dssp CSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGTSCCT-----------
T ss_pred CCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCcccccccccccccccc-----------
Confidence 8999999985 2233456688999999999999999998752 346899999987765221
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCC-------CC-ccHHHHHHHHhCC
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPT-------LN-TSAAAVLSLIKGA 220 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~-------~~-~~~~~~~~~~~~~ 220 (281)
....|+.+|++.+.+++.++.++ |+++++|.||.|.+|..... .. .......++....
T Consensus 149 -----------~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 217 (257)
T d2rhca1 149 -----------HAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARV 217 (257)
T ss_dssp -----------TCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSBCSHHHHHHHHHHHHHTTCCHHHHHHHHHTTS
T ss_pred -----------cchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCHHHHHHHhhhhhhcccChHHHHHHHHhcC
Confidence 12459999999999999999875 79999999999987642100 00 0111222222211
Q ss_pred CCCCCCCccceeHHHHHHHHHHhhcCCC--CCccEEEecCCC
Q 023515 221 QTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVERVS 260 (281)
Q Consensus 221 ~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~~~~ 260 (281)
+ ...+..++|+|+++++++.... -.|+.+..++.+
T Consensus 218 -P----lgR~~~pedia~~v~fL~S~~s~~itG~~i~vDGG~ 254 (257)
T d2rhca1 218 -P----IGRYVQPSEVAEMVAYLIGPGAAAVTAQALNVCGGL 254 (257)
T ss_dssp -T----TSSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTC
T ss_pred -C----CCCCcCHHHHHHHHHHHhCchhcCCcCceEEECcCc
Confidence 1 1237799999999999997543 356555554433
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=99.95 E-value=4.7e-29 Score=209.02 Aligned_cols=231 Identities=16% Similarity=0.126 Sum_probs=161.5
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchh--hhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKT--RHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~--~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
+++||||||||||||++|+++|+++||+|++++|+....... ...... ...+++++++|++|.+.+.+++++++.+
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~--~~~~v~~v~~d~~d~~~~~~~~~~~~~~ 79 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYF--KQLGAKLIEASLDDHQRLVDALKQVDVV 79 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHH--HTTTCEEECCCSSCHHHHHHHHTTCSEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhh--ccCCcEEEEeecccchhhhhhccCcchh
Confidence 356799999999999999999999999999999976543321 111111 1246899999999999999999999999
Q ss_pred EEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCc
Q 023515 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL 165 (281)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 165 (281)
||+++... ...|..++.+++++|.+. ...++++.||.+... .. +..+.. +..
T Consensus 80 ~~~~~~~~----------~~~~~~~~~~~l~~a~~~-~~~~~v~~Ss~g~~~-~~----------~~~~~~------~~~ 131 (312)
T d1qyda_ 80 ISALAGGV----------LSHHILEQLKLVEAIKEA-GNIKRFLPSEFGMDP-DI----------MEHALQ------PGS 131 (312)
T ss_dssp EECCCCSS----------SSTTTTTHHHHHHHHHHS-CCCSEEECSCCSSCT-TS----------CCCCCS------STT
T ss_pred hhhhhhcc----------cccchhhhhHHHHHHHHh-cCCcEEEEeeccccC-CC----------cccccc------hhh
Confidence 99986422 245667778899999987 667788888854322 10 111111 112
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC--CC--CCCCCccceeHHHHHHHHH
Q 023515 166 WYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA--QT--YPNVTFGWVNVKDVANAHI 241 (281)
Q Consensus 166 ~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~i~~~D~a~~i~ 241 (281)
.|..+|..++ .+.++.+++++++||+.+||+......... ......+. .. .|++.++|+|++|+|++++
T Consensus 132 ~~~~~~~~~~----~~~~~~~~~~~i~r~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~ 204 (312)
T d1qyda_ 132 ITFIDKRKVR----RAIEAASIPYTYVSSNMFAGYFAGSLAQLD---GHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTI 204 (312)
T ss_dssp HHHHHHHHHH----HHHHHTTCCBCEEECCEEHHHHTTTSSCTT---CCSSCCSSEECCBTTSCSEEEEECHHHHHHHHH
T ss_pred hhhHHHHHHH----HhhcccccceEEeccceeecCCccchhhHH---HHhhhcccccccccccccccceeeHHHHHHHHH
Confidence 2455554444 455667999999999999986533211100 00001111 22 2578899999999999999
Q ss_pred HhhcCCCCCc-c-EEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 242 QAFEVPSANG-R-YCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 242 ~~~~~~~~~g-~-~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
.++.++...+ . |+++ ++.+|+.|+++.+.+.+|.
T Consensus 205 ~~l~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~ 241 (312)
T d1qyda_ 205 KSIDDPQTLNKTMYIRPPMNILSQKEVIQIWERLSEQ 241 (312)
T ss_dssp HHTTCGGGSSSEEECCCGGGEEEHHHHHHHHHHHHTC
T ss_pred HHhcCccccCceEEEeCCCcCCCHHHHHHHHHHHHCC
Confidence 9999876644 4 4555 4678999999999998764
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=99.95 E-value=5.3e-28 Score=196.51 Aligned_cols=223 Identities=17% Similarity=0.156 Sum_probs=163.4
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++|++|||||+++||+++++.|+++|++|++++|+.+..+.+.+.... ..++.++++|++|+++++++++
T Consensus 4 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (251)
T d1zk4a1 4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT---PDQIQFFQHDSSDEDGWTKLFDATEKAF 80 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC---CCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 6799999999999999999999999999999999987655444433322 3578999999999998888775
Q ss_pred -CCcEeEEecccC-----CCCCCCccchhhhhHHHHHHHHHHHhhhCC---Cc-cEEEEeccceeeecCCCCCCCCeeee
Q 023515 81 -GCDGVCHTASPF-----YHDAKDPQVELLDPAVKGTLNVLNSCAKFP---SI-KRVVLTSSMAAVLNTGKPRTPDVVVD 150 (281)
Q Consensus 81 -~~d~Vih~a~~~-----~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~-~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (281)
++|++|||||.. .+...+.|+..+++|+.++..+.+++.+.| +. .++|++||..+..+.+
T Consensus 81 G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~~~~~---------- 150 (251)
T d1zk4a1 81 GPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGDP---------- 150 (251)
T ss_dssp SSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSCCT----------
T ss_pred CCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccceeccCC----------
Confidence 789999999862 233445678899999999999999988753 22 4799999987754221
Q ss_pred cCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh-----cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCC
Q 023515 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE-----KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (281)
Q Consensus 151 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (281)
....|+.+|.+.+.+.+.++.+ +|+++++|.||.|.+|....... ..... ......+
T Consensus 151 ------------~~~~Y~asKaal~~lt~~lA~e~~l~~~gIrVN~I~PG~i~T~~~~~~~~--~~~~~---~~~~~~p- 212 (251)
T d1zk4a1 151 ------------SLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPG--AEEAM---SQRTKTP- 212 (251)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTSTT--HHHHH---TSTTTCT-
T ss_pred ------------CchhHHHHHHHHhcchHHHHHHHhcCCCcEEEEEEeCCCCCChhHHhcCC--HHHHH---HHHhCCC-
Confidence 1245999999999999988754 47999999999998765322111 11111 1111111
Q ss_pred CCccceeHHHHHHHHHHhhcCCC--CCccEEEecCCCC
Q 023515 226 VTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVERVSH 261 (281)
Q Consensus 226 ~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~~~~t 261 (281)
...+..++|+|.++.+++.... -.|+.+..++.+|
T Consensus 213 -l~R~~~pedvA~~v~fL~S~~s~~itG~~i~vDGG~t 249 (251)
T d1zk4a1 213 -MGHIGEPNDIAYICVYLASNESKFATGSEFVVDGGYT 249 (251)
T ss_dssp -TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred -CCCCcCHHHHHHHHHHHhCchhCCCcCcEEEECcccc
Confidence 1236799999999999997543 3576555554443
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=99.95 E-value=1.3e-27 Score=194.08 Aligned_cols=214 Identities=17% Similarity=0.162 Sum_probs=159.6
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++|++|||||+++||++++++|+++|++|++++|+.++...+.++. ..++.++++|++++++++++++
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 77 (254)
T d1hdca_ 3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL-----GDAARYQHLDVTIEEDWQRVVAYAREEF 77 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-----GGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----CCceEEEEcccCCHHHHHHHHHHHHHHc
Confidence 67999999999999999999999999999999999875544433221 2468999999999998888775
Q ss_pred -CCcEeEEecccC-----CCCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 -GCDGVCHTASPF-----YHDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 -~~d~Vih~a~~~-----~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
++|++|||||.. .....+.|+..+++|+.++..+.+++.+.+ +..++|++||..+..+.+
T Consensus 78 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~~~~~~~~----------- 146 (254)
T d1hdca_ 78 GSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLA----------- 146 (254)
T ss_dssp SCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT-----------
T ss_pred CCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeecccccchhccccc-----------
Confidence 789999999862 233456688999999999999999998752 457999999987765221
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC--CCCCCC
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA--QTYPNV 226 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 226 (281)
....|+.+|++.+.+++.++.++ |+++.+|.||.|.+|.. .+..... ......
T Consensus 147 -----------~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~v~T~~~-----------~~~~~~~~~~~~~~~ 204 (254)
T d1hdca_ 147 -----------LTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMT-----------AETGIRQGEGNYPNT 204 (254)
T ss_dssp -----------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHH-----------HHHTCCCSTTSCTTS
T ss_pred -----------chhhHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeCcccCccc-----------hhcCHHHHHHHHhCC
Confidence 12459999999999999999864 89999999999977531 1111000 111111
Q ss_pred Cc-cc-eeHHHHHHHHHHhhcCCC--CCccEEEecC
Q 023515 227 TF-GW-VNVKDVANAHIQAFEVPS--ANGRYCLVER 258 (281)
Q Consensus 227 ~~-~~-i~~~D~a~~i~~~~~~~~--~~g~~~~~~~ 258 (281)
.. .+ ..++|+|.++++++.... -.|+.+..++
T Consensus 205 pl~R~g~~PedvA~~v~fL~S~~a~~itG~~i~vDG 240 (254)
T d1hdca_ 205 PMGRVGNEPGEIAGAVVKLLSDTSSYVTGAELAVDG 240 (254)
T ss_dssp TTSSCB-CHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCCCCCCCHHHHHHHHHHHhchhhCCCCCceEEeCC
Confidence 11 12 369999999999997543 3575554443
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=5.4e-28 Score=202.04 Aligned_cols=239 Identities=18% Similarity=0.194 Sum_probs=158.2
Q ss_pred EEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCc-HHHH-----hcCCcE
Q 023515 12 VCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGS-FDSI-----VDGCDG 84 (281)
Q Consensus 12 ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-~~~~-----~~~~d~ 84 (281)
|||||||||||++|+++|+++|+ +|+++++-.. ......+... . ..|..+.+. .... +..+++
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~-~~~~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKD-GTKFVNLVDL-----N----IADYMDKEDFLIQIMAGEEFGDVEA 71 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSS-GGGGHHHHTS-----C----CSEEEEHHHHHHHHHTTCCCSSCCE
T ss_pred EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCC-cchhhccccc-----c----hhhhccchHHHHHHhhhhcccchhh
Confidence 89999999999999999999995 7888875332 2121111111 0 112222122 1222 236789
Q ss_pred eEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCC
Q 023515 85 VCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSE 164 (281)
Q Consensus 85 Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 164 (281)
|+|+|+..... ..+.+...+.|+.++.++++++... +++ +|+.||..+++++. ....+++.+.. +.
T Consensus 72 i~~~aa~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~-~i~-~v~~ss~~~~~~~~-----~~~~~~~~~~~------~~ 137 (307)
T d1eq2a_ 72 IFHEGACSSTT-EWDGKYMMDNNYQYSKELLHYCLER-EIP-FLYASSAATYGGRT-----SDFIESREYEK------PL 137 (307)
T ss_dssp EEECCSCCCTT-CCCHHHHHHHTHHHHHHHHHHHHHH-TCC-EEEEEEGGGGTTCC-----SCBCSSGGGCC------CS
T ss_pred hhhhccccccc-ccccccccccccccccccccccccc-ccc-cccccccccccccc-----ccccccccccc------cc
Confidence 99999864433 3344577888999999999999997 664 77777766765432 11222222222 34
Q ss_pred chhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCC--Ccc-HHHHHHHHhCCC--C-C--CCCCccceeHHHH
Q 023515 165 LWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL--NTS-AAAVLSLIKGAQ--T-Y--PNVTFGWVNVKDV 236 (281)
Q Consensus 165 ~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~--~~~-~~~~~~~~~~~~--~-~--~~~~~~~i~~~D~ 236 (281)
++|+.+|..+|.+++.+.++++++++++||+++|||...... ... ......+..+.. . . +.+.++|+|++|+
T Consensus 138 ~~Y~~~K~~~e~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~d~ 217 (307)
T d1eq2a_ 138 NVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDV 217 (307)
T ss_dssp SHHHHHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC-------------CBCEEEHHHH
T ss_pred cccccccchhhhhccccccccccccccccceeEeeccccccccccccccccccccccccceeeecCccceeeeeeecccH
Confidence 679999999999999999999999999999999999764321 122 334444555542 1 2 4667899999999
Q ss_pred HHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 237 ANAHIQAFEVPSANGRYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 237 a~~i~~~~~~~~~~g~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
++++..++++.. .+.|+++ ++..++.|+++.+.+..+.
T Consensus 218 ~~~~~~~~~~~~-~~~~~~~~~~~~si~~i~~~i~~~~~~ 256 (307)
T d1eq2a_ 218 ADVNLWFLENGV-SGIFNLGTGRAESFQAVADATLAYHKK 256 (307)
T ss_dssp HHHHHHHHHHCC-CEEEEESCSCCBCHHHHHHHC------
T ss_pred HHHHHHHhhhcc-ccccccccccchhHHHHHHHHHHhcCC
Confidence 999999998764 4678775 7899999999999887653
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=99.95 E-value=9.1e-28 Score=195.76 Aligned_cols=219 Identities=15% Similarity=0.086 Sum_probs=160.5
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
.+++|+++||||+++||+++++.|+++|++|++.+|+.++.+.+.... ..++.++++|++|+++++++++
T Consensus 2 ~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~-----~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 76 (256)
T d1k2wa_ 2 RLDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEI-----GPAACAIALDVTDQASIDRCVAELLDR 76 (256)
T ss_dssp TTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHH-----CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----CCceEEEEeeCCCHHHHHHHHHHHHHH
Confidence 377999999999999999999999999999999999865544433322 2468899999999998888775
Q ss_pred --CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhC----CCccEEEEeccceeeecCCCCCCCCeee
Q 023515 81 --GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKF----PSIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (281)
Q Consensus 81 --~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (281)
++|++|||||... +...+.|+..+++|+.++..+++++.+. .+..++|++||..+..+.+
T Consensus 77 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~~--------- 147 (256)
T d1k2wa_ 77 WGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRRGEA--------- 147 (256)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCT---------
T ss_pred hCCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhccccc---------
Confidence 7899999999632 2344668899999999999999987653 1346899999987765221
Q ss_pred ecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCC--------ccHHHHHHHHh
Q 023515 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLN--------TSAAAVLSLIK 218 (281)
Q Consensus 150 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~--------~~~~~~~~~~~ 218 (281)
....|+.+|.+.+.+++.++.++ |+++++|.||.+.+|....... ...........
T Consensus 148 -------------~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (256)
T d1k2wa_ 148 -------------LVGVYCATKAAVISLTQSAGLNLIRHGINVNAIAPGVVDGEHWDGVDAKFADYENLPRGEKKRQVGA 214 (256)
T ss_dssp -------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred -------------cccchhhhhhHHHHHHHHHHHHhcccCeEEEEEecCCCCchhhhhhhhhhhhhccCChHHHHHHHHh
Confidence 12459999999999999998764 8999999999998875211000 00001111111
Q ss_pred CCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCccEEEe
Q 023515 219 GAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLV 256 (281)
Q Consensus 219 ~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~ 256 (281)
.. ....+..++|+|.++++++.... -.|+.+..
T Consensus 215 ~~-----PlgR~~~p~evA~~v~fL~S~~a~~iTG~~i~v 249 (256)
T d1k2wa_ 215 AV-----PFGRMGRAEDLTGMAIFLATPEADYIVAQTYNV 249 (256)
T ss_dssp HS-----TTSSCBCHHHHHHHHHHTTSGGGTTCCSCEEEE
T ss_pred cC-----CCCCCcCHHHHHHHHHHHhCchhCCccCceEEE
Confidence 11 12337799999999999997543 35654444
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.95 E-value=7.5e-28 Score=194.72 Aligned_cols=220 Identities=15% Similarity=0.124 Sum_probs=162.9
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCC-CCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------C
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDP-NDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------G 81 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~ 81 (281)
+.||||||+++||++++++|+++|++|++.+++. +..+.+.++.+.. ..++.++++|++|+++++++++ +
T Consensus 2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 79 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAY--GGQAITFGGDVSKEADVEAMMKTAIDAWGT 79 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH--TCEEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHc--CCcEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 4799999999999999999999999999876654 3344444433322 2578899999999998888765 7
Q ss_pred CcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeecCC
Q 023515 82 CDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (281)
Q Consensus 82 ~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~ 153 (281)
+|++|||||... +...+.|++.+++|+.++.++.+++.+.| +..++|++||..+..+.+
T Consensus 80 iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~~------------- 146 (244)
T d1edoa_ 80 IDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNI------------- 146 (244)
T ss_dssp CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCT-------------
T ss_pred CCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChhhcCCCC-------------
Confidence 899999998632 33456688999999999999999998863 457999999998776321
Q ss_pred CCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccc
Q 023515 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGW 230 (281)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (281)
....|+.+|.+.+.+.+.++.++ |+++++|.||.+.+|..... ............| ...+
T Consensus 147 ---------~~~~Y~asKaal~~ltk~lA~el~~~gIrvN~I~PG~i~T~~~~~~---~~~~~~~~~~~~p-----l~R~ 209 (244)
T d1edoa_ 147 ---------GQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKL---GEDMEKKILGTIP-----LGRT 209 (244)
T ss_dssp ---------TCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTT---CHHHHHHHHTSCT-----TCSC
T ss_pred ---------CCHHHHHHHHHHHHChHHHHHHHhhhCcEEEEEecceeccHHHHHh---hHHHHHHHHhcCC-----CCCC
Confidence 12459999999999999999874 89999999999987753221 1122222322211 2237
Q ss_pred eeHHHHHHHHHHhhcCCC---CCccEEEecCCCC
Q 023515 231 VNVKDVANAHIQAFEVPS---ANGRYCLVERVSH 261 (281)
Q Consensus 231 i~~~D~a~~i~~~~~~~~---~~g~~~~~~~~~t 261 (281)
..++|+|+++.+++..+. -.|+.+..++.+|
T Consensus 210 ~~p~dvA~~v~fLa~S~~a~~itG~~i~vdGG~s 243 (244)
T d1edoa_ 210 GQPENVAGLVEFLALSPAASYITGQAFTIDGGIA 243 (244)
T ss_dssp BCHHHHHHHHHHHHHCSGGGGCCSCEEEESTTTT
T ss_pred cCHHHHHHHHHHHHCCchhcCCcCCeEEeCCCee
Confidence 799999999999864332 3576665555444
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.95 E-value=1.2e-27 Score=193.33 Aligned_cols=227 Identities=17% Similarity=0.132 Sum_probs=158.8
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCE--EEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYT--VKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
|++|||||||||||++++++|+++|++ |+.+.|++++... + ..+++++.+|+++.+.+.++++++|.||
T Consensus 3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~---~------~~~~~~~~~d~~~~~~~~~~~~~~d~vi 73 (252)
T d2q46a1 3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEK---I------GGEADVFIGDITDADSINPAFQGIDALV 73 (252)
T ss_dssp CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHH---T------TCCTTEEECCTTSHHHHHHHHTTCSEEE
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHh---c------cCCcEEEEeeeccccccccccccceeeE
Confidence 789999999999999999999999965 6666776543222 1 1467899999999999999999999999
Q ss_pred EecccCCCC--------------CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecC
Q 023515 87 HTASPFYHD--------------AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (281)
Q Consensus 87 h~a~~~~~~--------------~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~ 152 (281)
|+|+..... .........++|+.++.+++..+... ..+.+.+.|+.......
T Consensus 74 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~------------- 139 (252)
T d2q46a1 74 ILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVA-GVKHIVVVGSMGGTNPD------------- 139 (252)
T ss_dssp ECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHH-TCSEEEEEEETTTTCTT-------------
T ss_pred EEEeeccccccccchhhhhhcccccccchhhhccccccceeeccccccc-cccccccccccccCCCC-------------
Confidence 999742210 01223466788999999999999987 77888888886443210
Q ss_pred CCCChhhhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC-CCCCCCCccce
Q 023515 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA-QTYPNVTFGWV 231 (281)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i 231 (281)
.+.. ......|...+.+ ...+..+.|++++++||+.+|||....... ..+. ........+|+
T Consensus 140 ---~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~ilRp~~v~g~~~~~~~~---------~~~~~~~~~~~~~~~i 202 (252)
T d2q46a1 140 ---HPLN-KLGNGNILVWKRK----AEQYLADSGTPYTIIRAGGLLDKEGGVREL---------LVGKDDELLQTDTKTV 202 (252)
T ss_dssp ---CGGG-GGGGCCHHHHHHH----HHHHHHHSSSCEEEEEECEEECSCTTSSCE---------EEESTTGGGGSSCCEE
T ss_pred ---cccc-cccccchhhhhhh----hhhhhhcccccceeecceEEECCCcchhhh---------hhccCcccccCCCCeE
Confidence 0000 0001124444443 344456689999999999999987432110 0111 12234567799
Q ss_pred eHHHHHHHHHHhhcCCCCCc-cEEEec----CCCCHHHHHHHHHHhCCC
Q 023515 232 NVKDVANAHIQAFEVPSANG-RYCLVE----RVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 232 ~~~D~a~~i~~~~~~~~~~g-~~~~~~----~~~t~~e~~~~i~~~~~~ 275 (281)
|++|+|++++.++++++..| +|++++ ...++.|+.+++.+..+.
T Consensus 203 ~~~Dva~a~~~~l~~~~~~g~~~~i~~~~~~~~~~~~~~~~lf~~i~~r 251 (252)
T d2q46a1 203 PRADVAEVCIQALLFEEAKNKAFDLGSKPEGTSTPTKDFKALFSQVTSR 251 (252)
T ss_dssp EHHHHHHHHHHHTTCGGGTTEEEEEEECCTTTSCCCCCHHHHHTTCCCC
T ss_pred EHHHHHHHHHHHhCCccccCcEEEEeeCCCCCChhHHHHHHHHHHHHhc
Confidence 99999999999999887766 898864 246788888777665543
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.3e-27 Score=194.64 Aligned_cols=214 Identities=17% Similarity=0.147 Sum_probs=159.9
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------- 80 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------- 80 (281)
.+|++|||||+++||+++++.|+++|++|++++|+.++.+.............++.++++|++|+++++++++
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 81 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG 81 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 4899999999999999999999999999999999876655544433322233579999999999998888775
Q ss_pred CCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCC------ccEEEEeccceeeecCCCCCCCCeeeecCCC
Q 023515 81 GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS------IKRVVLTSSMAAVLNTGKPRTPDVVVDETWF 154 (281)
Q Consensus 81 ~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~ 154 (281)
++|++|||||... .++|++.+++|+.++.++.+++.+.+. ..++|++||..+..+.+
T Consensus 82 ~iDilVnnAg~~~---~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~~~~~-------------- 144 (254)
T d2gdza1 82 RLDILVNNAGVNN---EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVA-------------- 144 (254)
T ss_dssp CCCEEEECCCCCC---SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCT--------------
T ss_pred CcCeecccccccc---cccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhccCCC--------------
Confidence 7899999999754 356889999999999999999987532 25699999987765221
Q ss_pred CChhhhccCCchhhhhHHHHHHHHHH--HHH---hcCCcEEEEcCCcccCCCCCCCCC--------ccHHHHHH-HHhCC
Q 023515 155 SDPEVCKQSELWYPLSKTLAEDAAWK--FAK---EKSIDLVTINPAMVIGPLLQPTLN--------TSAAAVLS-LIKGA 220 (281)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~e~~~~~--~~~---~~g~~~~~irp~~v~g~~~~~~~~--------~~~~~~~~-~~~~~ 220 (281)
....|+.+|++.+.+++. ++. .+|+++++|.||.|.+|....... .....+.+ ...
T Consensus 145 --------~~~~Y~asKaal~~ltrs~ala~e~~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~p~-- 214 (254)
T d2gdza1 145 --------QQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMIKY-- 214 (254)
T ss_dssp --------TCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGCHHHHGGGGGGHHHHHHHHHH--
T ss_pred --------CccchHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEcCCCCChhhhhccccccccccHHHHHHHHhcCCC--
Confidence 124599999999999885 343 358999999999998764221100 01111111 111
Q ss_pred CCCCCCCccceeHHHHHHHHHHhhcCCCCCccEEE
Q 023515 221 QTYPNVTFGWVNVKDVANAHIQAFEVPSANGRYCL 255 (281)
Q Consensus 221 ~~~~~~~~~~i~~~D~a~~i~~~~~~~~~~g~~~~ 255 (281)
..+..++|+|+++++++.+..-.|+.+.
T Consensus 215 -------~r~~~pedvA~~v~fL~s~~~itG~~i~ 242 (254)
T d2gdza1 215 -------YGILDPPLIANGLITLIEDDALNGAIMK 242 (254)
T ss_dssp -------HCCBCHHHHHHHHHHHHHCTTCSSCEEE
T ss_pred -------CCCcCHHHHHHHHHHHHcCCCCCCCEEE
Confidence 1267899999999999987766775443
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.95 E-value=1.2e-27 Score=194.93 Aligned_cols=220 Identities=16% Similarity=0.124 Sum_probs=160.0
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------CC
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------GC 82 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~ 82 (281)
|.+|||||+++||++++++|+++|++|++.+|++++.+.+.++.+.. ..++.++++|++|+++++++++ ++
T Consensus 2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 79 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQA--GGHAVAVKVDVSDRDQVFAAVEQARKTLGGF 79 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHHHHHTTCC
T ss_pred CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEeeCCCHHHHHHHHHHHHHHhCCc
Confidence 56799999999999999999999999999999877665555444332 2578999999999998888765 78
Q ss_pred cEeEEecccC-----CCCCCCccchhhhhHHHHHHHHHHHhhhC----CCccEEEEeccceeeecCCCCCCCCeeeecCC
Q 023515 83 DGVCHTASPF-----YHDAKDPQVELLDPAVKGTLNVLNSCAKF----PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (281)
Q Consensus 83 d~Vih~a~~~-----~~~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~ 153 (281)
|++|||||.. .+...+.|+..+++|+.++.++++++.+. .+..++|++||..+..+.+
T Consensus 80 DilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~~------------- 146 (255)
T d1gega_ 80 DVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGNP------------- 146 (255)
T ss_dssp CEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCT-------------
T ss_pred cEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhcccCc-------------
Confidence 9999999852 23345668899999999999999998763 2346799999987654221
Q ss_pred CCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCC--------ccHHHHHHHHhCCCC
Q 023515 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLN--------TSAAAVLSLIKGAQT 222 (281)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~--------~~~~~~~~~~~~~~~ 222 (281)
....|+.+|++.+.+++.++.++ |+++++|.||.+.+|....... .............
T Consensus 147 ---------~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 215 (255)
T d1gega_ 147 ---------ELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRI-- 215 (255)
T ss_dssp ---------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHHHHHHHHHHHTCCTTHHHHHHHTTC--
T ss_pred ---------ccccchhCHHHHHhhHHHHHHHhhhhCcEEEEEecCcccChHHhhhhhhhHhhhcccchhHHHHHHhcC--
Confidence 12459999999999999998764 8999999999998764110000 0000111111111
Q ss_pred CCCCCccceeHHHHHHHHHHhhcCCC--CCccEEEecC
Q 023515 223 YPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVER 258 (281)
Q Consensus 223 ~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~~ 258 (281)
....+..++|+|+++++++.... -.|+.+..++
T Consensus 216 ---pl~R~~~peevA~~v~fL~S~~a~~itG~~i~vDG 250 (255)
T d1gega_ 216 ---TLGRLSEPEDVAACVSYLASPDSDYMTGQSLLIDG 250 (255)
T ss_dssp ---TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESS
T ss_pred ---CCCCCcCHHHHHHHHHHHhCchhCCccCcEEEecC
Confidence 12236799999999999997543 2565555443
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=2e-27 Score=193.76 Aligned_cols=218 Identities=16% Similarity=0.156 Sum_probs=160.6
Q ss_pred hhccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 4 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
|.++++|++|||||+++||+++++.|+++|++|++.+|+.++.+.+.++........++.++++|++++++++++++
T Consensus 5 M~~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~ 84 (257)
T d1xg5a_ 5 MERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIR 84 (257)
T ss_dssp CGGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHH
Confidence 44588999999999999999999999999999999999876666655544443334578999999999998888765
Q ss_pred ----CCcEeEEecccC-----CCCCCCccchhhhhHHHHHHHHHHHhhhC----C-CccEEEEeccceeeecCCCCCCCC
Q 023515 81 ----GCDGVCHTASPF-----YHDAKDPQVELLDPAVKGTLNVLNSCAKF----P-SIKRVVLTSSMAAVLNTGKPRTPD 146 (281)
Q Consensus 81 ----~~d~Vih~a~~~-----~~~~~~~~~~~~~~n~~~~~~l~~~~~~~----~-~~~~~v~~SS~~~~~~~~~~~~~~ 146 (281)
++|++|||||.. .....+.|+..+++|+.++.++.+.+.+. . ...++|++||..+....+..
T Consensus 85 ~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~p~~---- 160 (257)
T d1xg5a_ 85 SQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVLPLS---- 160 (257)
T ss_dssp HHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCCSCG----
T ss_pred HhcCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcCCCCCc----
Confidence 789999999862 23345668899999999999998888653 1 24689999998765321100
Q ss_pred eeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh-----cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCC
Q 023515 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE-----KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ 221 (281)
Q Consensus 147 ~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~ 221 (281)
....|+.+|++.+.+++.++.+ +++++++|.||.+-++.................
T Consensus 161 ----------------~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~PG~i~t~~~~~~~~~~~~~~~~~~---- 220 (257)
T d1xg5a_ 161 ----------------VTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKDPEKAAATY---- 220 (257)
T ss_dssp ----------------GGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHTTTCHHHHHHHH----
T ss_pred ----------------ccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEeCCCCCChhhhhcChhhHHHHHhcC----
Confidence 1234999999999999988864 489999999999876532111111111111111
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCCCC
Q 023515 222 TYPNVTFGWVNVKDVANAHIQAFEVPSA 249 (281)
Q Consensus 222 ~~~~~~~~~i~~~D~a~~i~~~~~~~~~ 249 (281)
....++.++|+|+++++++..+..
T Consensus 221 ----~~~r~~~pedvA~~v~fL~s~~a~ 244 (257)
T d1xg5a_ 221 ----EQMKCLKPEDVAEAVIYVLSTPAH 244 (257)
T ss_dssp ----C---CBCHHHHHHHHHHHHHSCTT
T ss_pred ----CCCCCcCHHHHHHHHHHHhCChhc
Confidence 122378999999999999987653
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=99.94 E-value=1.1e-26 Score=188.94 Aligned_cols=218 Identities=14% Similarity=0.108 Sum_probs=161.6
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCC-cCcHHHHhc-----
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE-EGSFDSIVD----- 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~----- 80 (281)
+++|+||||||+++||++++++|+++|++|+++.|+.++...+.++.... ...++.++.+|+++ .++++++++
T Consensus 3 l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 81 (254)
T d1sbya1 3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAIN-PKVNITFHTYDVTVPVAESKKLLKKIFDQ 81 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHC-TTSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHHHhhC-CCCCEEEEEeecCCCHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999887765554433222 23579999999984 445655553
Q ss_pred --CCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCC------ccEEEEeccceeeecCCCCCCCCeeeecC
Q 023515 81 --GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS------IKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (281)
Q Consensus 81 --~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------~~~~v~~SS~~~~~~~~~~~~~~~~~~e~ 152 (281)
++|++|||||... .+.|+..+++|+.|+.++.+++.+.+. ..++|++||..++.+.+
T Consensus 82 ~g~iDilvnnAG~~~---~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~~~~------------ 146 (254)
T d1sbya1 82 LKTVDILINGAGILD---DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAIH------------ 146 (254)
T ss_dssp HSCCCEEEECCCCCC---TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCT------------
T ss_pred cCCCCEEEeCCCCCC---HHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhccCCC------------
Confidence 7899999999643 577889999999999999999998632 35799999988765221
Q ss_pred CCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCC--CCCccHHHHHHHHhCCCCCCCCC
Q 023515 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQP--TLNTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
....|+.+|++...+++.++.++ |+++++|.||.|.+|.... ........+.+... .
T Consensus 147 ----------~~~~Y~asKaal~~~t~~la~el~~~gIrVn~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~--------~ 208 (254)
T d1sbya1 147 ----------QVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLL--------S 208 (254)
T ss_dssp ----------TSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCCGGGSCTTHHHHHT--------T
T ss_pred ----------CCHHHHHHHHHHHHHHHHHHhhccccCeEEEEEEeCCCcCccccccccchhHHHHHHhccc--------c
Confidence 12459999999999999998764 8999999999999863110 00011111222221 1
Q ss_pred ccceeHHHHHHHHHHhhcCCCCCccEEEecC
Q 023515 228 FGWVNVKDVANAHIQAFEVPSANGRYCLVER 258 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~~~g~~~~~~~ 258 (281)
+....++++|++++.+++....+.++.+.|+
T Consensus 209 ~~~~~~e~va~~~~~~~~~~~tG~vi~vdgG 239 (254)
T d1sbya1 209 HPTQTSEQCGQNFVKAIEANKNGAIWKLDLG 239 (254)
T ss_dssp SCCEEHHHHHHHHHHHHHHCCTTCEEEEETT
T ss_pred CCCCCHHHHHHHHHHhhhCCCCCCEEEECCC
Confidence 2355899999999999887654335555543
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=2.5e-27 Score=196.89 Aligned_cols=225 Identities=14% Similarity=0.094 Sum_probs=161.3
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhcc---CCCCcEEEEEcCCCCcCcHHHHhc--
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALD---GASERLQLFKANLLEEGSFDSIVD-- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~-- 80 (281)
++++|++|||||+++||+++++.|+++|++|++++|+.++.+...++.... ....++.++++|++|+++++++++
T Consensus 9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 88 (297)
T d1yxma1 9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST 88 (297)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHH
Confidence 468999999999999999999999999999999999876655543332211 123578999999999998888765
Q ss_pred -----CCcEeEEeccc-----CCCCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCe
Q 023515 81 -----GCDGVCHTASP-----FYHDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDV 147 (281)
Q Consensus 81 -----~~d~Vih~a~~-----~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (281)
++|++||||+. +.....+.|+..+++|+.++..+.+++.+.+ +...+|++||... .+.+
T Consensus 89 ~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~Ii~~ss~~~-~~~~------- 160 (297)
T d1yxma1 89 LDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTK-AGFP------- 160 (297)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCCT-TCCT-------
T ss_pred HHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhcccccccccccccccc-cccc-------
Confidence 78999999985 2223456688999999999999999998753 3356887766422 2110
Q ss_pred eeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHH-HHHHHHhCCCCC
Q 023515 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAA-AVLSLIKGAQTY 223 (281)
Q Consensus 148 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~-~~~~~~~~~~~~ 223 (281)
....|+.+|++.+.+++.++.++ |+++.+|.||.|.++........... .........
T Consensus 161 ---------------~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~--- 222 (297)
T d1yxma1 161 ---------------LAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKI--- 222 (297)
T ss_dssp ---------------TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGGS---
T ss_pred ---------------ccccchhHHHHHHHHHHHHHHHhcccCceEEEeeeCcCcCcchhhhccccCHHHHHHHHhcC---
Confidence 12459999999999999999875 89999999999988753322211111 111111111
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCC--CCccEEEecC
Q 023515 224 PNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVER 258 (281)
Q Consensus 224 ~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~~ 258 (281)
+ ...+..++|+|.++++++.... -.|+.+..++
T Consensus 223 p--lgR~g~pedvA~~v~fL~Sd~s~~iTG~~i~VDG 257 (297)
T d1yxma1 223 P--AKRIGVPEEVSSVVCFLLSPAASFITGQSVDVDG 257 (297)
T ss_dssp T--TSSCBCTHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred C--CCCCcCHHHHHHHHHHHhCchhcCcCCcEEEeCc
Confidence 1 1236789999999999997543 3565544443
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.94 E-value=1.2e-26 Score=189.41 Aligned_cols=224 Identities=14% Similarity=0.082 Sum_probs=158.2
Q ss_pred ccCCCeEEEeCCch--HHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 6 AAAGKVVCVTGASG--YIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
++++|++|||||+| +||++++++|+++|++|++.+|++............ ..+..++++|++|+++++++++
T Consensus 5 ~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~ 81 (256)
T d1ulua_ 5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEA---LGGALLFRADVTQDEELDALFAGVK 81 (256)
T ss_dssp CCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHH---TTCCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhc---cCcccccccccCCHHHHHHHHHHHH
Confidence 47899999999987 899999999999999999888875433322222211 1356789999999988888765
Q ss_pred ----CCcEeEEecccCC---------CCCCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCCCCC
Q 023515 81 ----GCDGVCHTASPFY---------HDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPD 146 (281)
Q Consensus 81 ----~~d~Vih~a~~~~---------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~ 146 (281)
++|++||||+... +...+.|...+++|+.++..+++++.+.+ +.+++|++||..+..+.+
T Consensus 82 ~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~~~~~------ 155 (256)
T d1ulua_ 82 EAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVVP------ 155 (256)
T ss_dssp HHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTSBCT------
T ss_pred HhcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhcCCCC------
Confidence 6899999998521 22234466789999999999999998863 346899999987754221
Q ss_pred eeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCC
Q 023515 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY 223 (281)
Q Consensus 147 ~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~ 223 (281)
....|+.+|.+.+.+++.++.++ |+++++|.||.+.++...... .......+.....|
T Consensus 156 ----------------~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~I~PG~i~t~~~~~~~-~~~~~~~~~~~~~p-- 216 (256)
T d1ulua_ 156 ----------------KYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIP-GFTKMYDRVAQTAP-- 216 (256)
T ss_dssp ----------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC-----------CHHHHHHHHHHST--
T ss_pred ----------------CchHHHHHHHHHHHHHHHHHHHhcccCCEEeeeccceeeeccccchh-hhHHHHHHHHhcCC--
Confidence 12459999999999999999864 899999999999887643221 12223333333221
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCC--CCccEEEecCCC
Q 023515 224 PNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVERVS 260 (281)
Q Consensus 224 ~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~~~~ 260 (281)
...+..++|+|+++++++.... -.|+.+..++..
T Consensus 217 ---l~R~~~pedvA~~v~fL~S~~s~~itG~~i~VDGG~ 252 (256)
T d1ulua_ 217 ---LRRNITQEEVGNLGLFLLSPLASGITGEVVYVDAGY 252 (256)
T ss_dssp ---TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred ---CCCCcCHHHHHHHHHHHhCchhCCccCCeEEECcCE
Confidence 2237799999999999997544 367665555443
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=99.94 E-value=5.7e-27 Score=189.24 Aligned_cols=220 Identities=16% Similarity=0.121 Sum_probs=161.2
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++|+++||||+++||++++++|+++|++|++.+|+.++...+.. .. ..++.++++|++++++++++++
T Consensus 3 l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~---~~--~~~~~~~~~Dls~~~~i~~~~~~i~~~~ 77 (241)
T d2a4ka1 3 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVA---AL--EAEAIAVVADVSDPKAVEAVFAEALEEF 77 (241)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH---TC--CSSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH---Hc--CCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 679999999999999999999999999999999998754433222 11 2578899999999998887765
Q ss_pred -CCcEeEEeccc-----CCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCC
Q 023515 81 -GCDGVCHTASP-----FYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWF 154 (281)
Q Consensus 81 -~~d~Vih~a~~-----~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~ 154 (281)
++|++||||+. +.+...+.|+..+++|+.++..+.+++.+.+..++.|+++|..+....
T Consensus 78 g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~~--------------- 142 (241)
T d2a4ka1 78 GRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGA--------------- 142 (241)
T ss_dssp SCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCH---------------
T ss_pred CCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccccccc---------------
Confidence 68999999985 223345567899999999999999999987554445555554332200
Q ss_pred CChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccce
Q 023515 155 SDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWV 231 (281)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 231 (281)
| ....|+.+|++.|.+++.+++++ |+++.+|.||.+-++.... .......+.....| ...+.
T Consensus 143 --~-----~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~---~~~~~~~~~~~~~p-----~~r~~ 207 (241)
T d2a4ka1 143 --F-----GLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAG---LPPWAWEQEVGASP-----LGRAG 207 (241)
T ss_dssp --H-----HHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTT---SCHHHHHHHHHTST-----TCSCB
T ss_pred --c-----CccccchhhHHHHHHHHHHHHHHhHhCCEEeeeccCcCCCHHHHh---hhHhHHHHHHhCCC-----CCCCc
Confidence 0 12349999999999999999875 7999999999998875332 22334444444321 22367
Q ss_pred eHHHHHHHHHHhhcCCC--CCccEEEecCCCC
Q 023515 232 NVKDVANAHIQAFEVPS--ANGRYCLVERVSH 261 (281)
Q Consensus 232 ~~~D~a~~i~~~~~~~~--~~g~~~~~~~~~t 261 (281)
.++|+|+++.+++.+.. -.|+.+..++.+|
T Consensus 208 ~p~dva~~v~fL~S~~s~~itG~~i~vDGG~s 239 (241)
T d2a4ka1 208 RPEEVAQAALFLLSEESAYITGQALYVDGGRS 239 (241)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred CHHHHHHHHHHHhcchhCCCcCceEEeCCCcc
Confidence 99999999999997543 3676665554444
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=99.94 E-value=7.6e-27 Score=194.26 Aligned_cols=224 Identities=14% Similarity=0.058 Sum_probs=161.7
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--CCcEeEE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVCH 87 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~Vih 87 (281)
|||||||||||||++|+++|.++|+. +.++++... +.+|++|.+.++++++ ++|+|||
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g~~-v~~~~~~~~-------------------~~~Dl~~~~~~~~~i~~~~~D~Vih 60 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVGNL-IALDVHSKE-------------------FCGDFSNPKGVAETVRKLRPDVIVN 60 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTSEE-EEECTTCSS-------------------SCCCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCE-EEEECCCcc-------------------ccCcCCCHHHHHHHHHHcCCCEEEE
Confidence 57999999999999999999988864 445444321 2368999999999887 5799999
Q ss_pred ecccCCC-CCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCch
Q 023515 88 TASPFYH-DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (281)
Q Consensus 88 ~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 166 (281)
+||.... .........+++|+.++.+++++|++. + .+++++||..+++. ....+.+|++++.|. +.
T Consensus 61 ~Aa~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~-~~~~~~ss~~~~~~-----~~~~~~~E~~~~~p~------~~ 127 (298)
T d1n2sa_ 61 AAAHTAVDKAESEPELAQLLNATSVEAIAKAANET-G-AWVVHYSTDYVFPG-----TGDIPWQETDATSPL------NV 127 (298)
T ss_dssp CCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTT-T-CEEEEEEEGGGSCC-----CTTCCBCTTSCCCCS------SH
T ss_pred ecccccccccccCccccccccccccccchhhhhcc-c-cccccccccccccC-----CCCCCCccccccCCC------ch
Confidence 9986432 123344578899999999999999997 5 46888888776652 234567788776653 67
Q ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC--CCCCCCCccceeHHHHHHHHHHhh
Q 023515 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA--QTYPNVTFGWVNVKDVANAHIQAF 244 (281)
Q Consensus 167 Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~D~a~~i~~~~ 244 (281)
|+.+|..+|..++.. ..+..++|++..+++... .........+..+. ...+.+.++++|++|+++++..++
T Consensus 128 y~~~k~~~e~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~i 200 (298)
T d1n2sa_ 128 YGKTKLAGEKALQDN----CPKHLIFRTSWVYAGKGN---NFAKTMLRLAKERQTLSVINDQYGAPTGAELLADCTAHAI 200 (298)
T ss_dssp HHHHHHHHHHHHHHH----CSSEEEEEECSEECSSSC---CHHHHHHHHHHHCSEEEEECSCEECCEEHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhHHhh----hcccccccccceeeccCC---ccchhhhhhhcccceeecccceeecccccchHHHHHHHHH
Confidence 999999999988654 345566776666543211 11122223333333 233577888999999999998887
Q ss_pred c----CCCCCccEEEec-CCCCHHHHHHHHHHhC
Q 023515 245 E----VPSANGRYCLVE-RVSHYSEIVNIIRELY 273 (281)
Q Consensus 245 ~----~~~~~g~~~~~~-~~~t~~e~~~~i~~~~ 273 (281)
. .....++||+++ +.+++.|+++.+.+..
T Consensus 201 ~~~~~~~~~~~~~n~~~~~~~~~~~~~~~i~~~~ 234 (298)
T d1n2sa_ 201 RVALNKPEVAGLYHLVAGGTTTWHDYAALVFDEA 234 (298)
T ss_dssp HHHHHCGGGCEEEECCCBSCEEHHHHHHHHHHHH
T ss_pred hhhhccccccccccccCCCceecHHHHHHHHhhh
Confidence 5 344567899875 7899999999887764
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=99.94 E-value=6.8e-27 Score=188.59 Aligned_cols=198 Identities=15% Similarity=0.119 Sum_probs=155.8
Q ss_pred eEEEeCCchHHHHHHHHHHHHCCCE-------EEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 11 VVCVTGASGYIASWLVKLLLSRGYT-------VKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g~~-------V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
.||||||+++||++++++|+++|++ |+..+|+.++.+.+..+.+.. ..++.++++|++|+++++++++
T Consensus 3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~--g~~~~~~~~Dvt~~~~v~~~~~~~~ 80 (240)
T d2bd0a1 3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAE--GALTDTITADISDMADVRRLTTHIV 80 (240)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTT--TCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHH
Confidence 5899999999999999999999987 888888876655554443332 3578899999999998888765
Q ss_pred ----CCcEeEEecccC-----CCCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCee
Q 023515 81 ----GCDGVCHTASPF-----YHDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVV 148 (281)
Q Consensus 81 ----~~d~Vih~a~~~-----~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (281)
++|++|||||.. .+...+.|+..+++|+.|+..+.+++.++| +.+++|++||..+..+.+
T Consensus 81 ~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~-------- 152 (240)
T d2bd0a1 81 ERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKAFR-------- 152 (240)
T ss_dssp HHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT--------
T ss_pred HHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechhhcCCCC--------
Confidence 689999999862 233456688999999999999999999864 346899999988765321
Q ss_pred eecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh---cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCC
Q 023515 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (281)
Q Consensus 149 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (281)
....|+.+|++.+.+.+.++.+ +|+++++|.||.+.+|....... +
T Consensus 153 --------------~~~~Y~asK~al~~lt~~la~el~~~gIrvn~i~PG~v~T~~~~~~~~-----------------~ 201 (240)
T d2bd0a1 153 --------------HSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKVDD-----------------E 201 (240)
T ss_dssp --------------TCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCCCS-----------------T
T ss_pred --------------CChHHHHHHHHHHHHHHHHHHHhCcCCeEEEEeeeCcccCchhhhcCH-----------------h
Confidence 1245999999999999999876 48999999999998876432111 1
Q ss_pred CCccceeHHHHHHHHHHhhcCCCC
Q 023515 226 VTFGWVNVKDVANAHIQAFEVPSA 249 (281)
Q Consensus 226 ~~~~~i~~~D~a~~i~~~~~~~~~ 249 (281)
....+..++|+|+++++++.++..
T Consensus 202 ~~~~~~~PedvA~~v~~l~s~~~~ 225 (240)
T d2bd0a1 202 MQALMMMPEDIAAPVVQAYLQPSR 225 (240)
T ss_dssp TGGGSBCHHHHHHHHHHHHTSCTT
T ss_pred hHhcCCCHHHHHHHHHHHHcCCcc
Confidence 112356899999999999987654
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.94 E-value=3e-27 Score=192.15 Aligned_cols=222 Identities=17% Similarity=0.131 Sum_probs=160.6
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+++|+++||||+++||+++++.|+++|++|++.+|+.++.+.+.++. ..+..++++|++|.++++++++
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 78 (253)
T d1hxha_ 4 LQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL-----GERSMFVRHDVSSEADWTLVMAAVQRRL 78 (253)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH-----CTTEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----CCCeEEEEeecCCHHHHHHHHHHHHHHh
Confidence 67999999999999999999999999999999999875554443332 2467889999999988887765
Q ss_pred -CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC--CccEEEEeccceeeecCCCCCCCCeeeecC
Q 023515 81 -GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (281)
Q Consensus 81 -~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~ 152 (281)
++|++|||||... ....+.|++.+++|+.++..+++++.+.+ +..++|++||..+..+.+
T Consensus 79 g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~~~~~~------------ 146 (253)
T d1hxha_ 79 GTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWLPIE------------ 146 (253)
T ss_dssp CSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSCCT------------
T ss_pred CCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhhhcCcc------------
Confidence 7899999998622 23345688999999999999999998863 347899999987764221
Q ss_pred CCCChhhhccCCchhhhhHHHHHHHHHHHHHhc-----CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCC
Q 023515 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK-----SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
....|+.+|++.+.+++.++.++ ++++++|.||.+.+|........ ....+........ ...
T Consensus 147 ----------~~~~Y~asKaal~~lt~~lA~e~~~~g~~IrVN~I~PG~i~T~~~~~~~~~--~~~~~~~~~~~~~-~~~ 213 (253)
T d1hxha_ 147 ----------QYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPK--GVSKEMVLHDPKL-NRA 213 (253)
T ss_dssp ----------TBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSCT--TCCHHHHBCBTTT-BTT
T ss_pred ----------ccccccchhHHHHHHHHHHHHHHhhcCCCEEEEEEeECCCcCHhHHhhCcc--hhhHHHHHhCccc-ccc
Confidence 12459999999999999887653 59999999999987642100000 0001111111100 011
Q ss_pred ccceeHHHHHHHHHHhhcCCC--CCccEEEecC
Q 023515 228 FGWVNVKDVANAHIQAFEVPS--ANGRYCLVER 258 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~~ 258 (281)
-.+..++|+|+++++++.... -.|+.+..++
T Consensus 214 gr~~~pedvA~~v~fL~S~~s~~itG~~i~VDG 246 (253)
T d1hxha_ 214 GRAYMPERIAQLVLFLASDESSVMSGSELHADN 246 (253)
T ss_dssp CCEECHHHHHHHHHHHHSGGGTTCCSCEEEESS
T ss_pred CCCCCHHHHHHHHHHHhChhhCCCcCcEEEECc
Confidence 237799999999999997543 3675544443
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.94 E-value=1.3e-26 Score=189.84 Aligned_cols=228 Identities=16% Similarity=0.134 Sum_probs=160.5
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhcc-CCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALD-GASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
.+++|++|||||+++||++++++|+++|++|++++|+.++.+.+..+.... ....++.++++|++++++++++++
T Consensus 2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (264)
T d1spxa_ 2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG 81 (264)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999876665554443322 223579999999999998888775
Q ss_pred ---CCcEeEEecccCCC---------CCCCccchhhhhHHHHHHHHHHHhhhCC--CccEEEEecccee-eecCCCCCCC
Q 023515 81 ---GCDGVCHTASPFYH---------DAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAA-VLNTGKPRTP 145 (281)
Q Consensus 81 ---~~d~Vih~a~~~~~---------~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~-~~~~~~~~~~ 145 (281)
++|++|||||.... ...+.|+..+++|+.++.++.+++.+++ +...+|+++|..+ ..+.+
T Consensus 82 ~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~S~~~~~~~~~----- 156 (264)
T d1spxa_ 82 KFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIASGLHATP----- 156 (264)
T ss_dssp HHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTTSSSSCCT-----
T ss_pred HhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccccCcceeeeeeccccccCC-----
Confidence 78999999985211 1234578899999999999999999863 2246776666543 32111
Q ss_pred CeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCC------ccHHHHHHH
Q 023515 146 DVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLN------TSAAAVLSL 216 (281)
Q Consensus 146 ~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~------~~~~~~~~~ 216 (281)
....|+.+|.+.+.+++.++.++ |+++++|.||.|.++....... .........
T Consensus 157 -----------------~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~ 219 (264)
T d1spxa_ 157 -----------------DFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATM 219 (264)
T ss_dssp -----------------TSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHH
T ss_pred -----------------CchhhhhhhhhHHHHHHHHHHHhcccCeEEEEEeeCCCCCcchhccCCcHHHHHHHHHHHHHH
Confidence 12349999999999999998864 8999999999998875332110 011111222
Q ss_pred HhCCCCCCCCCccceeHHHHHHHHHHhhcCC---CCCccEEEecCCC
Q 023515 217 IKGAQTYPNVTFGWVNVKDVANAHIQAFEVP---SANGRYCLVERVS 260 (281)
Q Consensus 217 ~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~---~~~g~~~~~~~~~ 260 (281)
....| ...+..++|+|+++++++.++ .-.|+.+..++..
T Consensus 220 ~~~~P-----l~R~g~pedvA~~v~fL~S~~~s~~itG~~i~vDGG~ 261 (264)
T d1spxa_ 220 KECVP-----AGVMGQPQDIAEVIAFLADRKTSSYIIGHQLVVDGGS 261 (264)
T ss_dssp HHHCT-----TSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTG
T ss_pred HhcCC-----CCCCcCHHHHHHHHHHHhCCcccCCccCceEEeCCCh
Confidence 22111 223679999999999999743 2367655555443
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=99.94 E-value=1e-27 Score=199.86 Aligned_cols=227 Identities=15% Similarity=0.185 Sum_probs=159.9
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhc-cCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLAL-DGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
++|||||||||||||++++++|+++|++|++++|.............. .....+++++.+|+.+...+.+.+++++.||
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~vi 81 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVI 81 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhceeee
Confidence 378899999999999999999999999999999986554332221110 0112468999999999999999999999999
Q ss_pred EecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCch
Q 023515 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (281)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 166 (281)
|+++.. +..++.++++++... +.+++++.||..... . +.....+ ...
T Consensus 82 ~~~~~~--------------~~~~~~~~~~a~~~~-~~~~~~~~s~~~~~~-~-----------~~~~~~~------~~~ 128 (307)
T d1qyca_ 82 STVGSL--------------QIESQVNIIKAIKEV-GTVKRFFPSEFGNDV-D-----------NVHAVEP------AKS 128 (307)
T ss_dssp ECCCGG--------------GSGGGHHHHHHHHHH-CCCSEEECSCCSSCT-T-----------SCCCCTT------HHH
T ss_pred eccccc--------------ccchhhHHHHHHHHh-ccccceeeecccccc-c-----------ccccccc------ccc
Confidence 987532 334556778888887 777888888853322 1 1111111 122
Q ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC----CCCCCCCccceeHHHHHHHHHH
Q 023515 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA----QTYPNVTFGWVNVKDVANAHIQ 242 (281)
Q Consensus 167 Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~D~a~~i~~ 242 (281)
+...+...+..+ ++.+++++++||+.+||+........ ......+. ...+++.++|+|++|+|++++.
T Consensus 129 ~~~~~~~~~~~~----~~~~~~~~i~r~~~v~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~ 200 (307)
T d1qyca_ 129 VFEVKAKVRRAI----EAEGIPYTYVSSNCFAGYFLRSLAQA----GLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIK 200 (307)
T ss_dssp HHHHHHHHHHHH----HHHTCCBEEEECCEEHHHHTTTTTCT----TCSSCCSSEEEEETTSCCEEEEECHHHHHHHHHT
T ss_pred cccccccccchh----hccCCCceecccceecCCCccchhhh----hhhhhhcccceeeecccccccCCcHHHHHHHHHH
Confidence 455555555544 55689999999999999764322111 11111222 1236888999999999999999
Q ss_pred hhcCCCCCc--cEEEe-cCCCCHHHHHHHHHHhCCC
Q 023515 243 AFEVPSANG--RYCLV-ERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 243 ~~~~~~~~g--~~~~~-~~~~t~~e~~~~i~~~~~~ 275 (281)
+++++...+ .|+++ ++.+|+.|+++.+.+.+|.
T Consensus 201 ~l~~~~~~~~~~~~~~~~~~~s~~ei~~~~~~~~G~ 236 (307)
T d1qyca_ 201 AVDDPRTLNKTLYLRLPANTLSLNELVALWEKKIDK 236 (307)
T ss_dssp TSSCGGGTTEEEECCCGGGEEEHHHHHHHHHHHTTS
T ss_pred HhcChhhcCceeEEeCCCCccCHHHHHHHHHHHHCC
Confidence 999876544 45555 5789999999999999985
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.94 E-value=3e-26 Score=188.40 Aligned_cols=230 Identities=17% Similarity=0.169 Sum_probs=161.8
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhcc-CCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALD-GASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
.+++|++|||||+++||+++++.|+++|++|++.+|+.++.+.+.++.... ....++.++++|++|+++++++++
T Consensus 2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 81 (272)
T d1xkqa_ 2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK 81 (272)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999877665554443322 223578999999999998888775
Q ss_pred ---CCcEeEEecccCCCC---------CCCccchhhhhHHHHHHHHHHHhhhCC--CccEEEEeccc-eeeecCCCCCCC
Q 023515 81 ---GCDGVCHTASPFYHD---------AKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSM-AAVLNTGKPRTP 145 (281)
Q Consensus 81 ---~~d~Vih~a~~~~~~---------~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~-~~~~~~~~~~~~ 145 (281)
++|++|||||..... ..+.|+..+++|+.++.++.+++.+++ +...+|+++|. +...+.+
T Consensus 82 ~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~Ss~a~~~~~~----- 156 (272)
T d1xkqa_ 82 QFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGPQAQP----- 156 (272)
T ss_dssp HHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSSCCC-----
T ss_pred HhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccCCccccccchhccccCCC-----
Confidence 789999999863221 112377889999999999999998863 22456666553 3333111
Q ss_pred CeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCc--cHHHHHHHHhC-
Q 023515 146 DVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNT--SAAAVLSLIKG- 219 (281)
Q Consensus 146 ~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~--~~~~~~~~~~~- 219 (281)
....|+.+|++.+.+++.++.++ |+++++|.||.|.+|........ ...........
T Consensus 157 -----------------~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~ 219 (272)
T d1xkqa_ 157 -----------------DFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASH 219 (272)
T ss_dssp -----------------SSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHC
T ss_pred -----------------CcchhhhHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcchhhhccCCchHHHHHHHHHHHHH
Confidence 12459999999999999998764 89999999999988753211111 11111222111
Q ss_pred CCCCCCCCccceeHHHHHHHHHHhhcCC---CCCccEEEecCC
Q 023515 220 AQTYPNVTFGWVNVKDVANAHIQAFEVP---SANGRYCLVERV 259 (281)
Q Consensus 220 ~~~~~~~~~~~i~~~D~a~~i~~~~~~~---~~~g~~~~~~~~ 259 (281)
....+- ..+..++|+|.++++++... .-.|+.+..++.
T Consensus 220 ~~~~Pl--gR~g~pediA~~v~fL~S~~as~~iTG~~i~vDGG 260 (272)
T d1xkqa_ 220 KECIPI--GAAGKPEHIANIILFLADRNLSFYILGQSIVADGG 260 (272)
T ss_dssp TTTCTT--SSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTT
T ss_pred hcCCCC--CCCcCHHHHHHHHHHHhCcchhCCccCeEEEeCcC
Confidence 111121 23679999999999999642 246765555443
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=99.94 E-value=2.6e-26 Score=187.61 Aligned_cols=228 Identities=14% Similarity=0.143 Sum_probs=162.8
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhh-hccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLL-ALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
++++|++|||||+++||+++++.|+++|++|++++|+.++...+.+.. +.. ..++.++++|++|+++++++++
T Consensus 6 ~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~~ 83 (260)
T d1h5qa_ 6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEF--GVKTKAYQCDVSNTDIVTKTIQQIDA 83 (260)
T ss_dssp CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHH--TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh--CCceEEEEccCCCHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999987765543322 221 2478999999999998888775
Q ss_pred ---CCcEeEEecccC-----CCCCCCccchhhhhHHHHHHHHHHHhhhCC----CccEEEEeccceeeecCCCCCCCCee
Q 023515 81 ---GCDGVCHTASPF-----YHDAKDPQVELLDPAVKGTLNVLNSCAKFP----SIKRVVLTSSMAAVLNTGKPRTPDVV 148 (281)
Q Consensus 81 ---~~d~Vih~a~~~-----~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (281)
++|++||||+.. .+...+.|++.+++|+.++.++.+++.+.+ ....++..||......... .
T Consensus 84 ~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~~~~~~------~ 157 (260)
T d1h5qa_ 84 DLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQS------S 157 (260)
T ss_dssp HSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEE------E
T ss_pred HhCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeecccccccccc------c
Confidence 689999999852 223445688999999999999999887642 4456777777544321000 0
Q ss_pred eecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCC
Q 023515 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (281)
Q Consensus 149 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (281)
+ .. ......|+.+|.+.+.+++.++.++ |+++.+|.||.|.++..... ............|
T Consensus 158 ~-~~--------~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~---~~~~~~~~~~~~p---- 221 (260)
T d1h5qa_ 158 L-NG--------SLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHM---DKKIRDHQASNIP---- 221 (260)
T ss_dssp T-TE--------ECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGS---CHHHHHHHHHTCT----
T ss_pred c-cc--------CccccchhhhhhhHHHHHHHHHHHhchhCeEEeecCCCcccCcchhcc---CHHHHHHHHhcCC----
Confidence 0 00 0012459999999999999998764 89999999999988753321 1222233333221
Q ss_pred CCccceeHHHHHHHHHHhhcCCC--CCccEEEecC
Q 023515 226 VTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVER 258 (281)
Q Consensus 226 ~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~~ 258 (281)
...+..++|+|.++++++.... -.|+.+..++
T Consensus 222 -l~R~g~pedvA~~v~fL~S~~s~~itG~~i~VDG 255 (260)
T d1h5qa_ 222 -LNRFAQPEEMTGQAILLLSDHATYMTGGEYFIDG 255 (260)
T ss_dssp -TSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEECT
T ss_pred -CCCCcCHHHHHHHHHHHhcchhCCCcCceEEECC
Confidence 2237799999999999997543 3575554443
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=99.94 E-value=2.2e-26 Score=185.10 Aligned_cols=214 Identities=13% Similarity=0.058 Sum_probs=154.0
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCc-CcHHHHhcCCcEe
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEE-GSFDSIVDGCDGV 85 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~d~V 85 (281)
+++|++|||||+++||+++++.|+++|++|++++|+++..+. ...+++.+|+++. +.+.+.+.++|++
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~-----------~~~~~~~~Dv~~~~~~~~~~~g~iD~l 70 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKR-----------SGHRYVVCDLRKDLDLLFEKVKEVDIL 70 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-----------TCSEEEECCTTTCHHHHHHHSCCCSEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHh-----------cCCcEEEcchHHHHHHHHHHhCCCcEE
Confidence 579999999999999999999999999999999997543222 2456788999763 2233333489999
Q ss_pred EEecccC-----CCCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeecCCCCCh
Q 023515 86 CHTASPF-----YHDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDP 157 (281)
Q Consensus 86 ih~a~~~-----~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~ 157 (281)
|||||.. .+...+.|++.+++|+.++..+.+++.+.+ +..++|++||.....+.+
T Consensus 71 VnnAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~G~ii~i~S~~~~~~~~----------------- 133 (234)
T d1o5ia_ 71 VLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISPIE----------------- 133 (234)
T ss_dssp EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT-----------------
T ss_pred EecccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhccccccccccccccccccccccccccc-----------------
Confidence 9999852 233455678999999999999999988753 446899999976654211
Q ss_pred hhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeHH
Q 023515 158 EVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVK 234 (281)
Q Consensus 158 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 234 (281)
....|+.+|.+.+.+++.++.++ |+++.+|.||.+.++....... ....+......+ ...+..++
T Consensus 134 -----~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~~~---~~~~~~~~~~~p----l~R~~~pe 201 (234)
T d1o5ia_ 134 -----NLYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKELLS---EEKKKQVESQIP----MRRMAKPE 201 (234)
T ss_dssp -----TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHHSC---HHHHHHHHTTST----TSSCBCHH
T ss_pred -----ccccchhHHHHHHHHHHHHHHHhcccCeEEeecccCccchhhhhhhcC---HHHHHHHHhcCC----CCCCcCHH
Confidence 12459999999999999998864 8999999999998875321111 111222222211 22377999
Q ss_pred HHHHHHHHhhcCCC--CCccEEEecCCC
Q 023515 235 DVANAHIQAFEVPS--ANGRYCLVERVS 260 (281)
Q Consensus 235 D~a~~i~~~~~~~~--~~g~~~~~~~~~ 260 (281)
|+|.++.+++.... -.|+.+..++.+
T Consensus 202 diA~~v~fL~S~~s~~itG~~i~vDGG~ 229 (234)
T d1o5ia_ 202 EIASVVAFLCSEKASYLTGQTIVVDGGL 229 (234)
T ss_dssp HHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred HHHHHHHHHhChhhcCCcCcEEEECccc
Confidence 99999999997543 357665554443
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.94 E-value=2e-26 Score=189.65 Aligned_cols=227 Identities=15% Similarity=0.156 Sum_probs=162.5
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhcc-CCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALD-GASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
+++|+++||||+++||+++++.|+++|++|++.+|+.++.+.+..+.... ....++.++++|++|+++++++++
T Consensus 2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (274)
T d1xhla_ 2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK 81 (274)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999876655554443322 223578999999999988888775
Q ss_pred --CCcEeEEecccCCC-------CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCee
Q 023515 81 --GCDGVCHTASPFYH-------DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVV 148 (281)
Q Consensus 81 --~~d~Vih~a~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (281)
++|++|||||.... ...+.|+..+++|+.++..+.+++.+.+ +...++++||.....+.+
T Consensus 82 ~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~ii~~ss~~~~~~~~-------- 153 (274)
T d1xhla_ 82 FGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQAHS-------- 153 (274)
T ss_dssp HSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSSSCCT--------
T ss_pred cCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccccccccchhhhhccccCC--------
Confidence 68999999985211 1224578999999999999999998753 445788888765543211
Q ss_pred eecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCC--ccHHHHHHHHhCC-CC
Q 023515 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLN--TSAAAVLSLIKGA-QT 222 (281)
Q Consensus 149 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~--~~~~~~~~~~~~~-~~ 222 (281)
....|+.+|.+.+.+++.++.++ |+++++|.||.|.+|....... ............. ..
T Consensus 154 --------------~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (274)
T d1xhla_ 154 --------------GYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKEC 219 (274)
T ss_dssp --------------TSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTT
T ss_pred --------------CCceehhhhhHHHHHHHHHHHHHhHhCCceeeeccCCCcCchhhhhcccchhhHHHHHHHHHHHcC
Confidence 12359999999999999998864 8999999999998874321111 1111222222211 11
Q ss_pred CCCCCccceeHHHHHHHHHHhhcCC---CCCccEEEec
Q 023515 223 YPNVTFGWVNVKDVANAHIQAFEVP---SANGRYCLVE 257 (281)
Q Consensus 223 ~~~~~~~~i~~~D~a~~i~~~~~~~---~~~g~~~~~~ 257 (281)
.|- ..+..++|+|.++++++..+ .-.|+.+..+
T Consensus 220 iPl--gR~g~pediA~~v~fL~S~d~s~~itG~~i~vD 255 (274)
T d1xhla_ 220 IPV--GHCGKPEEIANIIVFLADRNLSSYIIGQSIVAD 255 (274)
T ss_dssp CTT--SSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEES
T ss_pred CCC--CCCcCHHHHHHHHHHHcCCccccCccCcEEEeC
Confidence 121 23669999999999999632 2467555444
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=99.94 E-value=1.5e-26 Score=190.56 Aligned_cols=225 Identities=15% Similarity=0.120 Sum_probs=160.5
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
++++|++|||||+++||++++++|+++|++|++++|+.++...+.... ..++.++++|+++.++++++++
T Consensus 2 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~-----~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 76 (276)
T d1bdba_ 2 KLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDH-----GDNVLGIVGDVRSLEDQKQAASRCVAR 76 (276)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-----CCCeeEEecccccHHHHHHHHHHHHHH
Confidence 378999999999999999999999999999999999865443332221 2478999999999988887765
Q ss_pred --CCcEeEEecccCCCC------CC----CccchhhhhHHHHHHHHHHHhhhCC--CccEEEEeccceeeecCCCCCCCC
Q 023515 81 --GCDGVCHTASPFYHD------AK----DPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPD 146 (281)
Q Consensus 81 --~~d~Vih~a~~~~~~------~~----~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~ 146 (281)
++|++|||||..... .. +.|++.+++|+.++..+.+++.+.+ +..++|++||..+..+.+
T Consensus 77 ~g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~g~iI~i~S~~~~~~~~------ 150 (276)
T d1bdba_ 77 FGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASRGNVIFTISNAGFYPNG------ 150 (276)
T ss_dssp HSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTSTTS------
T ss_pred hCCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcCCCceeeeechhccCCC------
Confidence 789999999853211 11 2377899999999999999998753 236899999976654221
Q ss_pred eeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc--CCcEEEEcCCcccCCCCCCCCCcc------HHHHHHHHh
Q 023515 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK--SIDLVTINPAMVIGPLLQPTLNTS------AAAVLSLIK 218 (281)
Q Consensus 147 ~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--g~~~~~irp~~v~g~~~~~~~~~~------~~~~~~~~~ 218 (281)
....|+.+|++.+.+++.++.++ ++++.+|.||.|.++...+..... .....+...
T Consensus 151 ----------------~~~~Y~asKaal~~ltr~lA~ela~~IrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (276)
T d1bdba_ 151 ----------------GGPLYTAAKHAIVGLVRELAFELAPYVRVNGVGSGGINSDLRGPSSLGMGSKAISTVPLADMLK 214 (276)
T ss_dssp ----------------SCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCSCCCCCGGGC---------CHHHHHT
T ss_pred ----------------CCchHHHHHHHHHHHHHHHHHHhhcceEEcccCCCCEecCcCCccchhhhhhccCcHHHHHHHH
Confidence 12459999999999999998875 589999999999887543321111 011112222
Q ss_pred CCCCCCCCCccceeHHHHHHHHHHhhcCC---CCCccEEEecCCCC
Q 023515 219 GAQTYPNVTFGWVNVKDVANAHIQAFEVP---SANGRYCLVERVSH 261 (281)
Q Consensus 219 ~~~~~~~~~~~~i~~~D~a~~i~~~~~~~---~~~g~~~~~~~~~t 261 (281)
... + ...+..++|+|.++++++..+ .-.|+.+..++.++
T Consensus 215 ~~~--P--lgR~g~peeva~~v~fL~S~~~a~~itG~~i~VDGG~~ 256 (276)
T d1bdba_ 215 SVL--P--IGRMPEVEEYTGAYVFFATRGDAAPATGALLNYDGGLG 256 (276)
T ss_dssp TTC--T--TSSCCCGGGGSHHHHHHHCHHHHTTCSSCEEEESSSGG
T ss_pred hcC--C--CCCCcCHHHHHHHHHHHcCCcccCCeeCcEEEECcChh
Confidence 211 1 122668999999999988532 24675555444333
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.94 E-value=3e-27 Score=187.76 Aligned_cols=194 Identities=18% Similarity=0.160 Sum_probs=133.6
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCC--EEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHH-HhcCCcEe
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDS-IVDGCDGV 85 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~-~~~~~d~V 85 (281)
.|+|||||||||||++|+++|+++|+ +|+.+.|++.... ..+.....|+ .++.. +...+|.|
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~~------------~~~~~~~~d~---~~~~~~~~~~~d~v 66 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEH------------PRLDNPVGPL---AELLPQLDGSIDTA 66 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCC------------TTEECCBSCH---HHHGGGCCSCCSEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhhc------------ccccccccch---hhhhhccccchhee
Confidence 57999999999999999999999997 6777776653221 1333333333 22333 33368999
Q ss_pred EEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCc
Q 023515 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL 165 (281)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 165 (281)
||++|........ .+.+.+.|+.++.+++++|++. ++++|+++||..++.. ..+
T Consensus 67 i~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~-~v~~~i~~Ss~~~~~~------------------------~~~ 120 (212)
T d2a35a1 67 FCCLGTTIKEAGS-EEAFRAVDFDLPLAVGKRALEM-GARHYLVVSALGADAK------------------------SSI 120 (212)
T ss_dssp EECCCCCHHHHSS-HHHHHHHHTHHHHHHHHHHHHT-TCCEEEEECCTTCCTT------------------------CSS
T ss_pred eeeeeeecccccc-ccccccchhhhhhhcccccccc-cccccccccccccccc------------------------ccc
Confidence 9998864322222 2478899999999999999998 9999999999766431 124
Q ss_pred hhhhhHHHHHHHHHHHHHhcCC-cEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhh
Q 023515 166 WYPLSKTLAEDAAWKFAKEKSI-DLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAF 244 (281)
Q Consensus 166 ~Y~~sK~~~e~~~~~~~~~~g~-~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~ 244 (281)
.|+.+|..+|+.++ +.++ +++++||+.+||+....... ..+ ...........+.+||++|+|++++.++
T Consensus 121 ~y~~~K~~~E~~l~----~~~~~~~~I~Rp~~v~G~~~~~~~~---~~~---~~~~~~~~~~~~~~i~v~DvA~ai~~~~ 190 (212)
T d2a35a1 121 FYNRVKGELEQALQ----EQGWPQLTIARPSLLFGPREEFRLA---EIL---AAPIARILPGKYHGIEACDLARALWRLA 190 (212)
T ss_dssp HHHHHHHHHHHHHT----TSCCSEEEEEECCSEESTTSCEEGG---GGT---TCCCC----CHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHhhhcc----ccccccceeeCCcceeCCcccccHH---HHH---HHHHhhccCCCCcEEEHHHHHHHHHHHH
Confidence 59999999999874 4566 59999999999987432110 000 0000111123456799999999999999
Q ss_pred cCCCCCccEE
Q 023515 245 EVPSANGRYC 254 (281)
Q Consensus 245 ~~~~~~g~~~ 254 (281)
.++.. |.++
T Consensus 191 ~~~~~-g~~~ 199 (212)
T d2a35a1 191 LEEGK-GVRF 199 (212)
T ss_dssp TCCCS-EEEE
T ss_pred cCCCC-CCEE
Confidence 87765 4333
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=3e-26 Score=185.44 Aligned_cols=222 Identities=14% Similarity=0.084 Sum_probs=161.2
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---CC
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---GC 82 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---~~ 82 (281)
++++|++|||||+++||+++++.|+++|++|++.+|++++.+.+.+. .++....+|+.+.+..+...+ ++
T Consensus 3 ~l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~~~~i 75 (245)
T d2ag5a1 3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKY-------PGIQTRVLDVTKKKQIDQFANEVERL 75 (245)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGGS-------TTEEEEECCTTCHHHHHHHHHHCSCC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc-------cCCceeeeeccccccccccccccccc
Confidence 37799999999999999999999999999999999986544333222 357888899987766665544 78
Q ss_pred cEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceee-ecCCCCCCCCeeeecCC
Q 023515 83 DGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAV-LNTGKPRTPDVVVDETW 153 (281)
Q Consensus 83 d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~-~~~~~~~~~~~~~~e~~ 153 (281)
|++||+||... +...+.|+..+++|+.++..+.+++.+.+ +..++|++||..+. .+..
T Consensus 76 d~lVn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~~~------------- 142 (245)
T d2ag5a1 76 DVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKGVV------------- 142 (245)
T ss_dssp SEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBCCT-------------
T ss_pred eeEEecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCCCceeeeeechhhccCCcc-------------
Confidence 99999998632 33456688999999999999999998742 45689999987542 1100
Q ss_pred CCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCC---CCccHHHHHHHHhCCCCCCCCC
Q 023515 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPT---LNTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
....|+.+|.+.+.+++.++.++ |+++++|.||.|.+|..... ............... ..
T Consensus 143 ---------~~~~Y~~sKaal~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~-----pl 208 (245)
T d2ag5a1 143 ---------NRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQ-----KT 208 (245)
T ss_dssp ---------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTC-----TT
T ss_pred ---------chhHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeceeechhhHhhhhhhhhhHHHHHHHHhcC-----CC
Confidence 12459999999999999999874 89999999999988642110 000111122222221 12
Q ss_pred ccceeHHHHHHHHHHhhcCCC--CCccEEEecCCCC
Q 023515 228 FGWVNVKDVANAHIQAFEVPS--ANGRYCLVERVSH 261 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~~~~t 261 (281)
..+..++|+|+++.+++.... -.|+.+..++.+|
T Consensus 209 ~R~~~pedva~~v~fL~s~~s~~iTG~~i~VDGG~s 244 (245)
T d2ag5a1 209 GRFATAEEIAMLCVYLASDESAYVTGNPVIIDGGWS 244 (245)
T ss_dssp SSCEEHHHHHHHHHHHHSGGGTTCCSCEEEECTTGG
T ss_pred CCCcCHHHHHHHHHHHhChhhCCCcCceEEeCCCcC
Confidence 347899999999999998543 3676666555444
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=2.5e-26 Score=185.37 Aligned_cols=200 Identities=13% Similarity=0.054 Sum_probs=156.2
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+.||+|+||||+++||++++++|+++|++|++.+|+.++.+.+..+.... ..++.++.+|++|+++++.+++
T Consensus 5 l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~--~~~~~~~~~Dvs~~~~v~~~~~~i~~~~ 82 (244)
T d1yb1a_ 5 VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL--GAKVHTFVVDCSNREDIYSSAKKVKAEI 82 (244)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence 67999999999999999999999999999999999887666655544332 2578999999999998888775
Q ss_pred -CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 -~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
++|++|||||.... ...+.|+..+++|+.|+.++++++.+.+ +.+++|++||..+..+.+
T Consensus 83 g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~~~~~~----------- 151 (244)
T d1yb1a_ 83 GDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSVP----------- 151 (244)
T ss_dssp CCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CCCHH-----------
T ss_pred CCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchhcCCCC-----------
Confidence 68999999986322 2234477999999999999999988752 457899999987764211
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHh------cCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCC
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE------KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~------~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (281)
....|+.||++.+.+.+.++.+ .|+++++|.||.|.++..... ...
T Consensus 152 -----------~~~~Y~asKaal~~~~~~La~El~~~~~~gI~V~~i~PG~v~T~~~~~~-------~~~---------- 203 (244)
T d1yb1a_ 152 -----------FLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNP-------STS---------- 203 (244)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTCT-------HHH----------
T ss_pred -----------CcHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEcCCCCChhhhCc-------Ccc----------
Confidence 1245999999999999999875 379999999999988753321 000
Q ss_pred CCccceeHHHHHHHHHHhhcCCC
Q 023515 226 VTFGWVNVKDVANAHIQAFEVPS 248 (281)
Q Consensus 226 ~~~~~i~~~D~a~~i~~~~~~~~ 248 (281)
...++.++|+|+.++..+....
T Consensus 204 -~~~~~~pe~va~~i~~~~~~~~ 225 (244)
T d1yb1a_ 204 -LGPTLEPEEVVNRLMHGILTEQ 225 (244)
T ss_dssp -HCCCCCHHHHHHHHHHHHHTTC
T ss_pred -ccCCCCHHHHHHHHHHHHhcCC
Confidence 1125679999999998887654
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.93 E-value=8e-26 Score=184.66 Aligned_cols=223 Identities=20% Similarity=0.146 Sum_probs=159.9
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC-cchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
+.+|+||||||+++||++++++|+++|++|++.+|+.++ .+.+.++.+.. ..++.++++|++|.++++++++
T Consensus 4 L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~--g~~~~~~~~D~~~~~~v~~~~~~~~~~ 81 (259)
T d1ja9a_ 4 LAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKL--GAQGVAIQADISKPSEVVALFDKAVSH 81 (259)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHc--CCCceEecCCCCCHHHHHHHHHHHHHH
Confidence 679999999999999999999999999999988776543 33433333322 2578999999999988888775
Q ss_pred --CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCCCCCeeeecC
Q 023515 81 --GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (281)
Q Consensus 81 --~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~ 152 (281)
++|++|||||... ....+.|+..+++|+.++.++++++.+++ +.+++++++|..+..... +
T Consensus 82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~~~~~~----~------- 150 (259)
T d1ja9a_ 82 FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMTGI----P------- 150 (259)
T ss_dssp HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCCSC----C-------
T ss_pred cCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccccccccccCC----C-------
Confidence 6899999998622 23445678999999999999999999864 234676676654432100 0
Q ss_pred CCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCC---------CCCCCccHHHHHHHHhCC
Q 023515 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLL---------QPTLNTSAAAVLSLIKGA 220 (281)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~---------~~~~~~~~~~~~~~~~~~ 220 (281)
....|+.+|++.+.+++.++.++ |+++.+|.||.+.++.. ..........+.+.....
T Consensus 151 ----------~~~~Y~asK~al~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (259)
T d1ja9a_ 151 ----------NHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANM 220 (259)
T ss_dssp ----------SCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHHT
T ss_pred ----------CchhHHHHHHHHHHHHHHHHHHHhhcCeEEeccCcCCccChhhhhhhhhhhhhhcccCCHHHHHHHHHhC
Confidence 12459999999999999999864 89999999999987521 111112223333332222
Q ss_pred CCCCCCCccceeHHHHHHHHHHhhcCCC--CCccEEEe
Q 023515 221 QTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLV 256 (281)
Q Consensus 221 ~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~ 256 (281)
. ....+..++|+|+++.+++.... -.|+.+..
T Consensus 221 ~----pl~R~g~p~eVa~~v~fL~S~~a~~itG~~i~v 254 (259)
T d1ja9a_ 221 N----PLKRIGYPADIGRAVSALCQEESEWINGQVIKL 254 (259)
T ss_dssp S----TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEE
T ss_pred C----CCCCCcCHHHHHHHHHHHhCchhcCCcCceEEe
Confidence 1 12347899999999999998654 35654443
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.93 E-value=6.9e-26 Score=184.20 Aligned_cols=216 Identities=12% Similarity=-0.006 Sum_probs=159.1
Q ss_pred eEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-------CCc
Q 023515 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------GCD 83 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d 83 (281)
++|||||+++||+++++.|+++|++|++.+|+.++.+.++... ..+.++|+++.++++++++ ++|
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~~--------~~~~~~dv~~~~~~~~~~~~~~~~~G~iD 73 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFA--------ETYPQLKPMSEQEPAELIEAVTSAYGQVD 73 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHH--------HHCTTSEECCCCSHHHHHHHHHHHHSCCC
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhhh--------CcEEEeccCCHHHHHHHHHHHHHHcCCCC
Confidence 6999999999999999999999999999999877665544432 2234688998888877765 789
Q ss_pred EeEEecccCC------CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeecCCC
Q 023515 84 GVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWF 154 (281)
Q Consensus 84 ~Vih~a~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~ 154 (281)
++|||||... ....++|+..+++|+.++.++++++.+++ +..++|++||..+..+.+
T Consensus 74 iLVnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IV~isS~~~~~~~~-------------- 139 (252)
T d1zmta1 74 VLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPWK-------------- 139 (252)
T ss_dssp EEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTSCCT--------------
T ss_pred EEEECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccceeecccccccccccc--------------
Confidence 9999998522 12335578899999999999999988753 447899999987754221
Q ss_pred CChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCC-----ccHHHHHHHHhCCCCCCCC
Q 023515 155 SDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLN-----TSAAAVLSLIKGAQTYPNV 226 (281)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 226 (281)
....|+.+|.+.+.+++.++.++ |+++++|.||.|.++....... .............|
T Consensus 140 --------~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~e~~~~~~~~~p----- 206 (252)
T d1zmta1 140 --------ELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTA----- 206 (252)
T ss_dssp --------TCHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHHSS-----
T ss_pred --------cccccccccccHHHHHHHHHHHhcccCcEEEEEecCCCcCcchhhhhhcccccCCHHHHHHHHhcCC-----
Confidence 12459999999999999998864 8999999999998876433221 11222333322221
Q ss_pred CccceeHHHHHHHHHHhhcCCCC--CccEEEecCCCC
Q 023515 227 TFGWVNVKDVANAHIQAFEVPSA--NGRYCLVERVSH 261 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~~--~g~~~~~~~~~t 261 (281)
...+..++|+|.++++++..... .|+.+..++.++
T Consensus 207 l~R~g~pedvA~~v~fL~S~~s~~iTG~~i~vdGG~~ 243 (252)
T d1zmta1 207 LQRLGTQKELGELVAFLASGSCDYLTGQVFWLAGGFP 243 (252)
T ss_dssp SSSCBCHHHHHHHHHHHHTTSCGGGTTCEEEESTTCC
T ss_pred CCCCcCHHHHHHHHHHHhCchhcCCcCCeEEECCCce
Confidence 12377999999999999976543 676665554444
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.93 E-value=4.9e-25 Score=181.25 Aligned_cols=226 Identities=17% Similarity=0.096 Sum_probs=160.8
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC-cchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
++++|++|||||+++||+++++.|+++|++|++++|+.++ .+.+..+.+.. ..++.++++|++|++++.++++
T Consensus 15 sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~--g~~~~~~~~D~~~~~~v~~~~~~~~~ 92 (272)
T d1g0oa_ 15 SLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKN--GSDAACVKANVGVVEDIVRMFEEAVK 92 (272)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhh--CCceeeEeCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999987543 23333332222 2578999999999988888775
Q ss_pred ---CCcEeEEecccC-----CCCCCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 ---GCDGVCHTASPF-----YHDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 ---~~d~Vih~a~~~-----~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
++|++||+++.. .....+.|++.+++|+.++..+++++.+.+ ..+++++++|..+..+..
T Consensus 93 ~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~~~~~~----------- 161 (272)
T d1g0oa_ 93 IFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAKAV----------- 161 (272)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCSSC-----------
T ss_pred HhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccccccccccccc-----------
Confidence 689999999852 233445577999999999999999999864 345788888765432111
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCC--------CCCCccHHHH-HHHHhC
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQ--------PTLNTSAAAV-LSLIKG 219 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~--------~~~~~~~~~~-~~~~~~ 219 (281)
.....|+.+|++.+.+++.++.++ |+++++|.||.|.++... .......... ......
T Consensus 162 ----------~~~~~Y~asKaal~~ltk~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (272)
T d1g0oa_ 162 ----------PKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQ 231 (272)
T ss_dssp ----------SSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHH
T ss_pred ----------cchhhHHHHHHHHHHHHHHHHHHhchhCeEEEEEccCCcCChHHHHHHHhhhhcccccchHHHHHHHHHc
Confidence 012459999999999999998864 899999999999875310 0001111111 111111
Q ss_pred CCCCCCCCccceeHHHHHHHHHHhhcCCC--CCccEEEecC
Q 023515 220 AQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVER 258 (281)
Q Consensus 220 ~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~~ 258 (281)
..+ ...+..++|+|.++.+++.... -.|+.+..++
T Consensus 232 ~~P----lgR~~~peevA~~v~fL~s~~s~~itG~~i~vDG 268 (272)
T d1g0oa_ 232 WSP----LRRVGLPIDIARVVCFLASNDGGWVTGKVIGIDG 268 (272)
T ss_dssp SCT----TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred cCC----CCCCcCHHHHHHHHHHHhCchhcCccCceEeECC
Confidence 111 1237899999999999997544 3676555443
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.92 E-value=3.8e-25 Score=180.67 Aligned_cols=214 Identities=16% Similarity=0.071 Sum_probs=156.1
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHH---CCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLS---RGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~---~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
+++|+++||||+++||++++++|++ +|++|++++|+.++.+.+.++........++.++++|++++++++++++
T Consensus 4 L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~~~ 83 (259)
T d1oaaa_ 4 LGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVR 83 (259)
T ss_dssp CBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHH
Confidence 6699999999999999999999986 7999999999887666655544333333579999999999988877763
Q ss_pred --------CCcEeEEecccCCC--------CCCCccchhhhhHHHHHHHHHHHhhhCCC-----ccEEEEeccceeeecC
Q 023515 81 --------GCDGVCHTASPFYH--------DAKDPQVELLDPAVKGTLNVLNSCAKFPS-----IKRVVLTSSMAAVLNT 139 (281)
Q Consensus 81 --------~~d~Vih~a~~~~~--------~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-----~~~~v~~SS~~~~~~~ 139 (281)
..|++|||||.... ...+.|+..+++|+.++..+.+++.+.+. ..++|++||..+..+.
T Consensus 84 ~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~~~~~~ 163 (259)
T d1oaaa_ 84 ELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQPY 163 (259)
T ss_dssp HSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTSCC
T ss_pred HhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcccccccccccccCCC
Confidence 35789999985321 12245778999999999999999998743 3589999998776522
Q ss_pred CCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc-CCcEEEEcCCcccCCCCCCCC--CccHHHHHHH
Q 023515 140 GKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK-SIDLVTINPAMVIGPLLQPTL--NTSAAAVLSL 216 (281)
Q Consensus 140 ~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-g~~~~~irp~~v~g~~~~~~~--~~~~~~~~~~ 216 (281)
+ ....|+.||++.+.+++.++.+. |+++++|.||.|.++...... ..........
T Consensus 164 ~----------------------~~~~Y~asKaal~~lt~~la~e~~gIrVn~v~PG~i~T~~~~~~~~~~~~~~~~~~~ 221 (259)
T d1oaaa_ 164 K----------------------GWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDNDMQQLARETSKDPELRSKL 221 (259)
T ss_dssp T----------------------TCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSHHHHHHHHHCSCHHHHHHH
T ss_pred c----------------------cchHHHHHHHHHHHHHHHHHhCCCCCEEEEEEcCCCCCHHHHHhhhcCCCHHHHHHH
Confidence 1 12459999999999999998764 899999999999876421000 0011111111
Q ss_pred HhCCCCCCCCCccceeHHHHHHHHHHhhcCC
Q 023515 217 IKGAQTYPNVTFGWVNVKDVANAHIQAFEVP 247 (281)
Q Consensus 217 ~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~ 247 (281)
.... ....+..++|+|+++++++.+.
T Consensus 222 ~~~~-----~~~r~~~p~evA~~i~~ll~~~ 247 (259)
T d1oaaa_ 222 QKLK-----SDGALVDCGTSAQKLLGLLQKD 247 (259)
T ss_dssp HHHH-----HTTCSBCHHHHHHHHHHHHHHC
T ss_pred HhcC-----CCCCCCCHHHHHHHHHHHhhhc
Confidence 1100 0112578999999999998753
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.92 E-value=2.7e-25 Score=184.79 Aligned_cols=200 Identities=17% Similarity=0.062 Sum_probs=148.3
Q ss_pred hccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcc------hhhhhhhccCCCCcEEEEEcCCCCcCcHHHH
Q 023515 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPK------KTRHLLALDGASERLQLFKANLLEEGSFDSI 78 (281)
Q Consensus 5 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~------~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 78 (281)
+++++|++|||||+++||+++++.|+++|++|++.+|+.+... .+++..... ........+|+.|.++.+++
T Consensus 3 m~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~ 80 (302)
T d1gz6a_ 3 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEI--RRRGGKAVANYDSVEAGEKL 80 (302)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHH--HHTTCEEEEECCCGGGHHHH
T ss_pred cCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHH--hhcccccccccchHHHHHHH
Confidence 4578999999999999999999999999999999988654321 111111110 01234566788888777666
Q ss_pred hc-------CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCC
Q 023515 79 VD-------GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPR 143 (281)
Q Consensus 79 ~~-------~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~ 143 (281)
++ ++|++|||||... +...+.|+..+++|+.+++++++++.++| +.++||++||..+..+.+
T Consensus 81 v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~~~~~~~~--- 157 (302)
T d1gz6a_ 81 VKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGNF--- 157 (302)
T ss_dssp HHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCT---
T ss_pred HHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCChhhcCCCC---
Confidence 54 7899999999632 23455688999999999999999999864 447999999998876332
Q ss_pred CCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC
Q 023515 144 TPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA 220 (281)
Q Consensus 144 ~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~ 220 (281)
....|+.+|++.+.+.+.++.++ |+++++|.||.+..+.... ...
T Consensus 158 -------------------~~~~Y~asKaal~~lt~~la~E~~~~gIrVN~I~PG~~~t~~~~~----~~~--------- 205 (302)
T d1gz6a_ 158 -------------------GQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAGSRMTETV----MPE--------- 205 (302)
T ss_dssp -------------------TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECCSTTTGGG----SCH---------
T ss_pred -------------------CcHHHHHHHHHHHHHHHHHHHHHhccCCceeeeCCCCCCcchhhc----CcH---------
Confidence 12459999999999999999874 8999999999875433111 001
Q ss_pred CCCCCCCccceeHHHHHHHHHHhhcC
Q 023515 221 QTYPNVTFGWVNVKDVANAHIQAFEV 246 (281)
Q Consensus 221 ~~~~~~~~~~i~~~D~a~~i~~~~~~ 246 (281)
....++.++|+|.++++++..
T Consensus 206 -----~~~~~~~PedvA~~v~fL~S~ 226 (302)
T d1gz6a_ 206 -----DLVEALKPEYVAPLVLWLCHE 226 (302)
T ss_dssp -----HHHHHSCGGGTHHHHHHHTST
T ss_pred -----hhHhcCCHHHHHHHHHHHcCC
Confidence 112245789999999999864
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=99.92 E-value=8.7e-25 Score=181.90 Aligned_cols=223 Identities=16% Similarity=0.099 Sum_probs=156.2
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhh-hccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLL-ALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
++++|++|||||+|+||++++++|+++|++|++++|+..+...+.+.. ... ...+.++++|+++.++++++++
T Consensus 22 ~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~--g~~~~~~~~D~~~~~~v~~~~~~~~~ 99 (294)
T d1w6ua_ 22 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT--GNKVHAIQCDVRDPDMVQNTVSELIK 99 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH--SSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhc--CCceEEEEecccChHHHHHHhhhhhh
Confidence 578999999999999999999999999999999999876554433322 222 2568899999999988877664
Q ss_pred ---CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhC----CCccEEEEeccceeeecCCCCCCCCee
Q 023515 81 ---GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF----PSIKRVVLTSSMAAVLNTGKPRTPDVV 148 (281)
Q Consensus 81 ---~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (281)
++|++||+||.... .....+...+.+|+.+...+...+... .....++.+||..+..+.+
T Consensus 100 ~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~~~~~-------- 171 (294)
T d1w6ua_ 100 VAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSG-------- 171 (294)
T ss_dssp HTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHCCT--------
T ss_pred hccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchhhhccc--------
Confidence 78999999986332 122345677888988888877665532 2445678888776544221
Q ss_pred eecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCC
Q 023515 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (281)
Q Consensus 149 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (281)
....|+.+|.+.+.+++.++.++ |+++++|.||.|.++..............+.....|
T Consensus 172 --------------~~~~YsasKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~p---- 233 (294)
T d1w6ua_ 172 --------------FVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIP---- 233 (294)
T ss_dssp --------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSHHHHHHHTTCT----
T ss_pred --------------ccchHHHHHHHHHHHHHHHHHHHhHhCeEEEEEccCccccchhhhccCCcHHHHHHHhhcCC----
Confidence 12459999999999999999764 899999999999987643322222233333333221
Q ss_pred CCccceeHHHHHHHHHHhhcCCC--CCccEEEec
Q 023515 226 VTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVE 257 (281)
Q Consensus 226 ~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~ 257 (281)
...+..++|+|.++.+++.... -.|+.+..+
T Consensus 234 -l~R~~~pediA~~v~fL~sd~s~~itG~~i~vD 266 (294)
T d1w6ua_ 234 -CGRLGTVEELANLAAFLCSDYASWINGAVIKFD 266 (294)
T ss_dssp -TSSCBCHHHHHHHHHHHTSGGGTTCCSCEEEES
T ss_pred -CCCCCCHHHHHHHHHHHhCchhcCCCCcEEEEC
Confidence 2236789999999999997543 366554443
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=6.8e-25 Score=181.29 Aligned_cols=225 Identities=20% Similarity=0.146 Sum_probs=153.7
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEE---cCCCCcchhhhhh-hccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASV---RDPNDPKKTRHLL-ALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~---r~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
.|.||||||+++||++++++|+++|.+|+.+. |+.+....+.+.. .......++.++.+|++|++++.++++
T Consensus 2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 81 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE 81 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTT
T ss_pred CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhccc
Confidence 56789999999999999999999998765554 4433333333322 122234689999999999999888775
Q ss_pred -CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC---CccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 -GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 -~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
.+|++||||+... ....+.|+..+++|+.|+.++.+++.+.| +.+++|++||..+..+.+
T Consensus 82 g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~~g~~~~~----------- 150 (285)
T d1jtva_ 82 GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLP----------- 150 (285)
T ss_dssp SCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTSCCT-----------
T ss_pred cchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEechhhcCCCC-----------
Confidence 5899999998522 23446678999999999999999998753 457899999988765221
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHH--------HHHHHHhCC
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAA--------AVLSLIKGA 220 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~--------~~~~~~~~~ 220 (281)
....|+.||++.+.+.+.++.++ |+++++|.||.|.++........... ...+.....
T Consensus 151 -----------~~~~Y~asKaal~~l~~~la~El~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (285)
T d1jtva_ 151 -----------FNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTFHRFYQYL 219 (285)
T ss_dssp -----------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC-------CCHHHHHHTSCHHHHHHHHHHH
T ss_pred -----------CchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCCChHHHHhccCHHHHhhccchhHHHHHHHHH
Confidence 12459999999999999998864 89999999999998764432221111 111100000
Q ss_pred CCC-CCCCccceeHHHHHHHHHHhhcCCCCCccEEE
Q 023515 221 QTY-PNVTFGWVNVKDVANAHIQAFEVPSANGRYCL 255 (281)
Q Consensus 221 ~~~-~~~~~~~i~~~D~a~~i~~~~~~~~~~g~~~~ 255 (281)
... .........++|+|++++++++.+++.-.|..
T Consensus 220 ~~~~~~~~~~~~~PeeVA~~v~~~~~~~~p~~ry~~ 255 (285)
T d1jtva_ 220 AHSKQVFREAAQNPEEVAEVFLTALRAPKPTLRYFT 255 (285)
T ss_dssp HHHHHHHHHHCBCHHHHHHHHHHHHHCSSCCSEEES
T ss_pred HHHhhhhcccCCCHHHHHHHHHHHHhCCCCCeEEec
Confidence 000 00011256899999999999987765434543
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.92 E-value=4.2e-24 Score=173.30 Aligned_cols=172 Identities=16% Similarity=0.189 Sum_probs=133.9
Q ss_pred CCeEEEeCCchHHHHHHHHHHHH---CCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 9 GKVVCVTGASGYIASWLVKLLLS---RGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~---~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
||+||||||+++||++++++|++ +|++|++.+|++++.+.+.++.+. ..++.++++|++|+++++++++
T Consensus 2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dvs~~~~v~~~~~~i~~~ 78 (248)
T d1snya_ 2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKN---HSNIHILEIDLRNFDAYDKLVADIEGV 78 (248)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHH---CTTEEEEECCTTCGGGHHHHHHHHHHH
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhc---CCcEEEEEEEeccHHHHHHHHhhhHHH
Confidence 68999999999999999999974 689999999998887666544332 2479999999999988877654
Q ss_pred ----CCcEeEEecccCCC------CCCCccchhhhhHHHHHHHHHHHhhhCC--------------CccEEEEeccceee
Q 023515 81 ----GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFP--------------SIKRVVLTSSMAAV 136 (281)
Q Consensus 81 ----~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~~--------------~~~~~v~~SS~~~~ 136 (281)
++|++|||||.... ...+.+++.+++|+.|+..+++++.+.+ +..++|++||..+.
T Consensus 79 ~~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S~~g~ 158 (248)
T d1snya_ 79 TKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGS 158 (248)
T ss_dssp HGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGGC
T ss_pred hhcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhccccccccccccccccccccccc
Confidence 58999999986322 1223367899999999999999987642 24689999997654
Q ss_pred ecCCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCC
Q 023515 137 LNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLL 202 (281)
Q Consensus 137 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~ 202 (281)
.... +. .....|+.||++...+++.++.++ |++++.+.||.|.++..
T Consensus 159 ~~~~-~~------------------~~~~~Y~aSKaal~~lt~~la~e~~~~gI~vn~v~PG~v~T~m~ 208 (248)
T d1snya_ 159 IQGN-TD------------------GGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMG 208 (248)
T ss_dssp STTC-CS------------------CCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTTT
T ss_pred cCCC-CC------------------CChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCCcccCCcc
Confidence 3111 00 012359999999999999988754 89999999999988763
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=99.91 E-value=2.3e-24 Score=183.62 Aligned_cols=225 Identities=16% Similarity=0.192 Sum_probs=160.5
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCc-HHHHhcCCcEeE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGS-FDSIVDGCDGVC 86 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-~~~~~~~~d~Vi 86 (281)
+.|+|+|||||||||++|+++|+++||+|+++.|++.+... ..+.. ..+++++++|+.|..+ ++.+++++|.++
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~-~~~~~----~~~v~~~~gD~~d~~~~~~~a~~~~~~~~ 76 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIA-EELQA----IPNVTLFQGPLLNNVPLMDTLFEGAHLAF 76 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHH-HHHHT----STTEEEEESCCTTCHHHHHHHHTTCSEEE
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhh-hhhcc----cCCCEEEEeeCCCcHHHHHHHhcCCceEE
Confidence 47899999999999999999999999999999998765432 11111 2479999999998654 677888999988
Q ss_pred EecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCch
Q 023515 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (281)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 166 (281)
++... ....|+..+.+++++|.+. +++++++.||........ . . ....
T Consensus 77 ~~~~~-----------~~~~~~~~~~~~~~aa~~a-gv~~~v~~Ss~~~~~~~~-~-------------~------~~~~ 124 (350)
T d1xgka_ 77 INTTS-----------QAGDEIAIGKDLADAAKRA-GTIQHYIYSSMPDHSLYG-P-------------W------PAVP 124 (350)
T ss_dssp ECCCS-----------TTSCHHHHHHHHHHHHHHH-SCCSEEEEEECCCGGGTS-S-------------C------CCCT
T ss_pred eeccc-----------ccchhhhhhhHHHHHHHHh-CCCceEEEeeccccccCC-c-------------c------cchh
Confidence 76532 1234678889999999998 778888888864432111 0 0 1133
Q ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCC-----CCCCCCCccceeH-HHHHHHH
Q 023515 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA-----QTYPNVTFGWVNV-KDVANAH 240 (281)
Q Consensus 167 Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~-~D~a~~i 240 (281)
|..+|...+.++ .+.+++++++||+.+++............ .....+. +..++..+.|+++ +|+++++
T Consensus 125 ~~~~k~~~~~~~----~~~~~~~~~vr~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~Dva~~v 198 (350)
T d1xgka_ 125 MWAPKFTVENYV----RQLGLPSTFVYAGIYNNNFTSLPYPLFQM--ELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPAL 198 (350)
T ss_dssp TTHHHHHHHHHH----HTSSSCEEEEEECEEGGGCBSSSCSSCBE--EECTTSCEEEEESSCTTSCEEEECHHHHHHHHH
T ss_pred hhhhHHHHHHHH----HhhccCceeeeeceeeccccccccccccc--cccccccceeeecccCCCcceEEEeHHHHHHHH
Confidence 778888887765 44689999999998876532221111000 0011121 2336777888876 7999999
Q ss_pred HHhhcCCC--CCc-cEEEecCCCCHHHHHHHHHHhCCC
Q 023515 241 IQAFEVPS--ANG-RYCLVERVSHYSEIVNIIRELYPA 275 (281)
Q Consensus 241 ~~~~~~~~--~~g-~~~~~~~~~t~~e~~~~i~~~~~~ 275 (281)
..++..+. ..| .|+++++.+|+.|+++.+.+.+|.
T Consensus 199 ~~~l~~~~~~~~G~~~~~~g~~~T~~eia~~l~~~~G~ 236 (350)
T d1xgka_ 199 LQIFKDGPQKWNGHRIALTFETLSPVQVCAAFSRALNR 236 (350)
T ss_dssp HHHHHHCHHHHTTCEEEECSEEECHHHHHHHHHHHHTS
T ss_pred HHHHhCChhhcCCeEEEEeCCcCCHHHHHHHHHHHHCC
Confidence 99987542 234 778888889999999999999885
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.2e-23 Score=170.65 Aligned_cols=212 Identities=18% Similarity=0.140 Sum_probs=152.2
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
++++|++|||||+++||++++++|+++|++|++++|+.++.+.+.+.. ..+......|+.+.+.++...+
T Consensus 2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (248)
T d2o23a1 2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL-----GNNCVFAPADVTSEKDVQTALALAKGK 76 (248)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHH-----CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh-----CCCcccccccccccccccccccccccc
Confidence 478999999999999999999999999999999999987765544332 2467888899988766555443
Q ss_pred --CCcEeEEecccCC-----------CCCCCccchhhhhHHHHHHHHHHHhhhCC---------CccEEEEeccceeeec
Q 023515 81 --GCDGVCHTASPFY-----------HDAKDPQVELLDPAVKGTLNVLNSCAKFP---------SIKRVVLTSSMAAVLN 138 (281)
Q Consensus 81 --~~d~Vih~a~~~~-----------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---------~~~~~v~~SS~~~~~~ 138 (281)
..|.++++++... ....+.|+..+++|+.++.++.+++.+.+ +..++|++||..+..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~ 156 (248)
T d2o23a1 77 FGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEG 156 (248)
T ss_dssp HSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHC
T ss_pred cccccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhhccC
Confidence 5788888765311 11224577899999999999999987631 2357999999987653
Q ss_pred CCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHH
Q 023515 139 TGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLS 215 (281)
Q Consensus 139 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~ 215 (281)
.+ ....|+.+|++.+.+++.++.++ |+++++|.||.+.++....... .....
T Consensus 157 ~~----------------------~~~~Y~asKaal~~lt~~la~e~~~~gIrvN~I~PG~i~T~~~~~~~~---~~~~~ 211 (248)
T d2o23a1 157 QV----------------------GQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTSLPE---KVCNF 211 (248)
T ss_dssp CT----------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC-------------CH
T ss_pred CC----------------------CchHHHHHHHHHHHHHHHHHHHhcccCcceeeeccCceecchhhcCCH---HHHHH
Confidence 21 12459999999999999999874 8999999999998876432111 11111
Q ss_pred HHhCCCCCCCCCccceeHHHHHHHHHHhhcCCCCCc
Q 023515 216 LIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPSANG 251 (281)
Q Consensus 216 ~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~~~g 251 (281)
.....|.. ..+..++|+|+++.++++...-.|
T Consensus 212 ~~~~~pl~----~R~g~peevA~~v~fL~s~~~itG 243 (248)
T d2o23a1 212 LASQVPFP----SRLGDPAEYAHLVQAIIENPFLNG 243 (248)
T ss_dssp HHHTCSSS----CSCBCHHHHHHHHHHHHHCTTCCS
T ss_pred HHhcCCCC----CCCcCHHHHHHHHHHHHhCCCCCc
Confidence 22221211 126799999999999998554445
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.90 E-value=2.1e-23 Score=169.36 Aligned_cols=211 Identities=19% Similarity=0.196 Sum_probs=144.8
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCC--EEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
+.|+||||||+++||++++++|+++|+ +|++.+|+.++.+.+.++ ...++.++++|++|.++++++++
T Consensus 2 ~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~-----~~~~~~~~~~Dvs~~~~v~~~~~~i~~~ 76 (250)
T d1yo6a1 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSI-----KDSRVHVLPLTVTCDKSLDTFVSKVGEI 76 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTC-----CCTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHh-----hCCceEEEEEecCCHHHHHHHHHHHHHH
Confidence 368999999999999999999999994 788889887665443332 13579999999999988777654
Q ss_pred ----CCcEeEEecccCCC------CCCCccchhhhhHHHHHHHHHHHhhhCC--------------CccEEEEeccceee
Q 023515 81 ----GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFP--------------SIKRVVLTSSMAAV 136 (281)
Q Consensus 81 ----~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~~--------------~~~~~v~~SS~~~~ 136 (281)
++|++|||||.... ...+.|++.+++|+.|+.++++.+.+.+ ...+++.+|+....
T Consensus 77 ~~~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~~~~ 156 (250)
T d1yo6a1 77 VGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGS 156 (250)
T ss_dssp HGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGC
T ss_pred hCCCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceecccccccccccc
Confidence 38999999996321 1223467899999999999999988642 12467888776443
Q ss_pred ecCCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHH
Q 023515 137 LNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAV 213 (281)
Q Consensus 137 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~ 213 (281)
........ . ..+...|+.||++...+++.++.++ |++++++.||.|-++....
T Consensus 157 ~~~~~~~~---------~------~~~~~aY~aSKaal~~l~~~la~el~~~gI~v~~i~PG~v~T~m~~~--------- 212 (250)
T d1yo6a1 157 ITDNTSGS---------A------QFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGK--------- 212 (250)
T ss_dssp STTCCSTT---------S------SSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC----------------
T ss_pred ccCCcccc---------c------chhHHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCCCCCCC---------
Confidence 31110000 0 0012349999999999999998864 8999999999998764211
Q ss_pred HHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCccEEEe-cCCCC
Q 023515 214 LSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLV-ERVSH 261 (281)
Q Consensus 214 ~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~-~~~~t 261 (281)
...+.+++.++.++..+.+.. ..|.|+.. +.++.
T Consensus 213 --------------~~~~~~e~~a~~~~~~~~~~~~~~sG~f~~~~g~p~~ 249 (250)
T d1yo6a1 213 --------------NAALTVEQSTAELISSFNKLDNSHNGRFFMRNLKPYE 249 (250)
T ss_dssp --------------------HHHHHHHHHHHTTCCGGGTTCEEETTEEECC
T ss_pred --------------CCCCCHHHHHHHHHHHHhcCCCCCCeEEECCCCeeCC
Confidence 113578899999988887643 35666543 34443
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=9.4e-24 Score=173.83 Aligned_cols=220 Identities=17% Similarity=0.112 Sum_probs=151.4
Q ss_pred CCeE-EEeCCchHHHHHHHHHHHHC-CCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 9 GKVV-CVTGASGYIASWLVKLLLSR-GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 9 ~~~i-lItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
+|+| |||||+++||++++++|+++ |++|++.+|+.++.+...+..+.. ..++.++++|++|.++++++++
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dvs~~~sv~~~~~~~~~~~ 79 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAE--GLSPRFHQLDIDDLQSIRALRDFLRKEY 79 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHT--TCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEEecCCHHHHHHHHHHHHHhc
Confidence 5555 99999999999999999986 899999999987765554443332 2468899999999988877664
Q ss_pred -CCcEeEEecccCCCC-----CCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCCC------CCe
Q 023515 81 -GCDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRT------PDV 147 (281)
Q Consensus 81 -~~d~Vih~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~------~~~ 147 (281)
++|++|||||..... ..+.|+..+++|+.|+..+++.+.+.+ +..++|++||..+..+.....+ ...
T Consensus 80 g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~~~~~~~~~~~~y~~~k~~~~ 159 (275)
T d1wmaa1 80 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSE 159 (275)
T ss_dssp SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHHCS
T ss_pred CCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccceeccccccchhhhhhhccc
Confidence 789999999963321 123466789999999999999999874 3458999999876542110000 000
Q ss_pred eeec---------------CCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc-------CCcEEEEcCCcccCCCCCCC
Q 023515 148 VVDE---------------TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK-------SIDLVTINPAMVIGPLLQPT 205 (281)
Q Consensus 148 ~~~e---------------~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-------g~~~~~irp~~v~g~~~~~~ 205 (281)
...+ ..... ....+...|+.||.+...+.+.+++++ |++++++.||.|.++...+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~aY~~sK~a~~~~t~~la~~l~~~~~~~~I~vn~v~PG~v~T~m~~~~ 237 (275)
T d1wmaa1 160 TITEEELVGLMNKFVEDTKKGVHQ--KEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGPK 237 (275)
T ss_dssp SCCHHHHHHHHHHHHHHHHTTCTT--TTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTTCTT
T ss_pred ccchhhhccccccchhcccccccc--cCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccCCcccCc
Confidence 0000 00000 000122459999999998887766542 89999999999987653221
Q ss_pred CCccHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC----CCccEEE
Q 023515 206 LNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS----ANGRYCL 255 (281)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~----~~g~~~~ 255 (281)
....++|.|+.+++++..+. ..|.|+-
T Consensus 238 -----------------------~~~~pee~A~~~~~~a~~~~~~~~~~G~~~~ 268 (275)
T d1wmaa1 238 -----------------------ATKSPEEGAETPVYLALLPPDAEGPHGQFVS 268 (275)
T ss_dssp -----------------------CSBCHHHHTHHHHHHHSCCTTCCCCCSCEEE
T ss_pred -----------------------ccCCHHHHHHHHHHHHcCChhhcCCCeEEEE
Confidence 13368999999988764322 2466653
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=99.89 E-value=5.7e-23 Score=167.74 Aligned_cols=206 Identities=16% Similarity=0.146 Sum_probs=150.0
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhhhh-ccCCCCcEEEEEcCCCCcCcHHHHhc------
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLA-LDGASERLQLFKANLLEEGSFDSIVD------ 80 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~------ 80 (281)
.++||||||+|+||++++++|+++|+ +|+++.|+..+.+...+... ......++.++.+|++|.+++.++++
T Consensus 9 ~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i~~~~ 88 (259)
T d2fr1a1 9 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGDDV 88 (259)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCTTS
T ss_pred cCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhccccccc
Confidence 56999999999999999999999998 68888887544333332211 11123579999999999999888775
Q ss_pred CCcEeEEecccCCC-----CCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCCCCCeeeecCCCC
Q 023515 81 GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFS 155 (281)
Q Consensus 81 ~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~ 155 (281)
++|.|||+|+.... ...+.++..+++|+.++.++.+++.+. +..+||++||+.+..+.++
T Consensus 89 ~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~-~~~~iv~~SS~a~~~g~~~-------------- 153 (259)
T d2fr1a1 89 PLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTREL-DLTAFVLFSSFASAFGAPG-------------- 153 (259)
T ss_dssp CEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTS-CCSEEEEEEEHHHHTCCTT--------------
T ss_pred cccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhcc-CCceEeeecchhhccCCcc--------------
Confidence 47999999986332 223446678899999999999998887 7789999999988764331
Q ss_pred ChhhhccCCchhhhhHHHHHHHHHHHHHhcCCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeHHH
Q 023515 156 DPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKD 235 (281)
Q Consensus 156 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D 235 (281)
...|+++|...+.+.+++.. .|+++++|.||.+.+++.... .....+. ......+.+++
T Consensus 154 --------~~~YaAaka~l~~la~~~~~-~Gi~v~~I~pg~~~~~g~~~~------~~~~~~~------~~G~~~~~~~~ 212 (259)
T d2fr1a1 154 --------LGGYAPGNAYLDGLAQQRRS-DGLPATAVAWGTWAGSGMAEG------PVADRFR------RHGVIEMPPET 212 (259)
T ss_dssp --------CTTTHHHHHHHHHHHHHHHH-TTCCCEEEEECCBC------------------CT------TTTEECBCHHH
T ss_pred --------cHHHHHHHHhHHHHHHHHHh-CCCCEEECCCCcccCCccccc------hHHHHHH------hcCCCCCCHHH
Confidence 23499999999999988855 599999999999877653211 1111111 11234678999
Q ss_pred HHHHHHHhhcCCCCC
Q 023515 236 VANAHIQAFEVPSAN 250 (281)
Q Consensus 236 ~a~~i~~~~~~~~~~ 250 (281)
+++++..++.+....
T Consensus 213 ~~~~l~~~l~~~~~~ 227 (259)
T d2fr1a1 213 ACRALQNALDRAEVC 227 (259)
T ss_dssp HHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHhCCCce
Confidence 999999999876653
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=1.5e-22 Score=165.07 Aligned_cols=224 Identities=14% Similarity=0.089 Sum_probs=157.2
Q ss_pred cCCCeEEEeCCch--HHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----
Q 023515 7 AAGKVVCVTGASG--YIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (281)
Q Consensus 7 ~~~~~ilItGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---- 80 (281)
+++|+||||||+| +||+++++.|+++|++|++.+|++.....+.++.... ......+.|+.+..+....++
T Consensus 3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (258)
T d1qsga_ 3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQL---GSDIVLQCDVAEDASIDTMFAELGK 79 (258)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHT---TCCCEEECCTTCHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhhc---CCcceeecccchHHHHHHHHHHhhh
Confidence 6799999999998 8999999999999999999999865444443332222 356777889988776666553
Q ss_pred ---CCcEeEEecccCCCC----------CCCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCCCCC
Q 023515 81 ---GCDGVCHTASPFYHD----------AKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPD 146 (281)
Q Consensus 81 ---~~d~Vih~a~~~~~~----------~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~ 146 (281)
..|++||+|+..... ..+.+....++|+.+...+.+++.+.+ +.+.+|++||..+..+.+
T Consensus 80 ~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~~~~~------ 153 (258)
T d1qsga_ 80 VWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIP------ 153 (258)
T ss_dssp TCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCT------
T ss_pred cccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhccCCC------
Confidence 679999999752211 112245677888999999999888763 234688888876554221
Q ss_pred eeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCC
Q 023515 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY 223 (281)
Q Consensus 147 ~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~ 223 (281)
....|+.+|.+.+.+++.++.++ |+++++|+||.|.++..... ..............|
T Consensus 154 ----------------~~~~Y~~sKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~-~~~~~~~~~~~~~~p-- 214 (258)
T d1qsga_ 154 ----------------NYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGI-KDFRKMLAHCEAVTP-- 214 (258)
T ss_dssp ----------------TTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGS-TTHHHHHHHHHHHST--
T ss_pred ----------------CcHHHHHHHHHHHHHHHHHHHHhCccCceeeccccccccccccccc-chhhhHHHHHHhCCC--
Confidence 12459999999999999999875 79999999999998864322 112222222222211
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCC--CCccEEEecCCCC
Q 023515 224 PNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVERVSH 261 (281)
Q Consensus 224 ~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~~~~t 261 (281)
...+..++|+|.++.+++.+.. -.|+.+..++.++
T Consensus 215 ---l~R~~~peeia~~v~fL~s~~s~~itG~~i~vDGG~~ 251 (258)
T d1qsga_ 215 ---IRRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGGFS 251 (258)
T ss_dssp ---TSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTGG
T ss_pred ---CCCCcCHHHHHHHHHHHhCchhcCccCceEEECcCHH
Confidence 1237799999999999997543 3676555554443
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=7.6e-23 Score=167.73 Aligned_cols=204 Identities=16% Similarity=0.079 Sum_probs=151.2
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 80 (281)
++++|++||||||++||++++++|+++|++|++++|+.++.+.+....... ....+..+.+|+.+.+....+.+
T Consensus 11 ~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 89 (269)
T d1xu9a_ 11 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLEL-GAASAHYIAGTMEDMTFAEQFVAQAGKL 89 (269)
T ss_dssp GGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH-TCSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhh-hcccchhhhhhhhhHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999876655543332211 12568889999988776655443
Q ss_pred --CCcEeEEecccCC-----CCCCCccchhhhhHHHHHHHHHHHhhhCC--CccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 --GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 --~~d~Vih~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
.+|+++|||+... +...+.++..+++|+.++..+.+.+.+.+ +.+++|++||..+..+.+
T Consensus 90 ~g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~G~ii~isS~~~~~~~p----------- 158 (269)
T d1xu9a_ 90 MGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYP----------- 158 (269)
T ss_dssp HTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTSCCT-----------
T ss_pred hCCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcCCcceEeccchhcCCCC-----------
Confidence 6899999998522 12234466889999999999999998753 246899999987765221
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc-----CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCC
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK-----SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (281)
....|+.||++.+.+.+.++.++ +++++.+.||.|.++. ..+...+ ..
T Consensus 159 -----------~~~~Y~asKaal~~~~~~La~El~~~~~~I~V~~v~PG~v~T~~-----------~~~~~~~-----~~ 211 (269)
T d1xu9a_ 159 -----------MVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTET-----------AMKAVSG-----IV 211 (269)
T ss_dssp -----------TCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHH-----------HHHHSCG-----GG
T ss_pred -----------CchHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEecCcCCCcH-----------HHHhccC-----Cc
Confidence 12459999999999999998763 6889999999997643 1222111 12
Q ss_pred CccceeHHHHHHHHHHhhcCCC
Q 023515 227 TFGWVNVKDVANAHIQAFEVPS 248 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~ 248 (281)
......++++|+.++......+
T Consensus 212 ~~~~~~~e~~a~~i~~~~~~~~ 233 (269)
T d1xu9a_ 212 HMQAAPKEECALEIIKGGALRQ 233 (269)
T ss_dssp GGGCBCHHHHHHHHHHHHHTTC
T ss_pred cccCCCHHHHHHHHHHHhhcCC
Confidence 2335678999999988776544
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.88 E-value=2.2e-22 Score=161.76 Aligned_cols=191 Identities=13% Similarity=0.069 Sum_probs=138.9
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHh-------c
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV-------D 80 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-------~ 80 (281)
++|+||||||+|+||++++++|+++|++|.++++...+... ....+..|..+.+..+.+. .
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEAS------------ASVIVKMTDSFTEQADQVTAEVGKLLG 68 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTSS------------EEEECCCCSCHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccccc------------ccceeecccCcHHHHHHHHHHHHHHhC
Confidence 48999999999999999999999999999999987643211 2334445555443333222 2
Q ss_pred --CCcEeEEecccCC---CCC---CCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCCCCCeeeec
Q 023515 81 --GCDGVCHTASPFY---HDA---KDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (281)
Q Consensus 81 --~~d~Vih~a~~~~---~~~---~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~e 151 (281)
++|++|||||... ... .+.|+..+++|+.++.++.+++.+++ +..++|++||..+..+.+
T Consensus 69 ~~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~~~~----------- 137 (236)
T d1dhra_ 69 DQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGTP----------- 137 (236)
T ss_dssp TCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCT-----------
T ss_pred CCCceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHcCCcc-----------
Confidence 5899999998422 111 23466789999999999999999863 346899999987754221
Q ss_pred CCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc-----CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCC
Q 023515 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK-----SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (281)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (281)
....|+.||++.+.+++.++.+. |+++++|.||.+.+|.. ... ... ..
T Consensus 138 -----------~~~~Y~asKaal~~lt~~la~El~~~~~gI~vn~v~PG~v~T~~~-----------~~~-~~~----~~ 190 (236)
T d1dhra_ 138 -----------GMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPMN-----------RKS-MPE----AD 190 (236)
T ss_dssp -----------TBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHHH-----------HHH-STT----SC
T ss_pred -----------CCcccHHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeccCcCCcc-----------hhh-Ccc----ch
Confidence 12459999999999999998763 69999999999987541 111 110 11
Q ss_pred CccceeHHHHHHHHHHhhcCCC
Q 023515 227 TFGWVNVKDVANAHIQAFEVPS 248 (281)
Q Consensus 227 ~~~~i~~~D~a~~i~~~~~~~~ 248 (281)
.-.|+.++|+|+.+.+++....
T Consensus 191 ~~~~~~pe~va~~~~~l~s~~~ 212 (236)
T d1dhra_ 191 FSSWTPLEFLVETFHDWITGNK 212 (236)
T ss_dssp GGGSEEHHHHHHHHHHHHTTTT
T ss_pred hhcCCCHHHHHHHHHHHhCCCc
Confidence 2347899999999999997543
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.87 E-value=3.3e-22 Score=160.69 Aligned_cols=189 Identities=18% Similarity=0.163 Sum_probs=135.4
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHH-------h--
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI-------V-- 79 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-------~-- 79 (281)
..|||||||+++||++++++|+++|++|++++|++.+.. .....+.+|..+.+..... +
T Consensus 2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (235)
T d1ooea_ 2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA------------DSNILVDGNKNWTEQEQSILEQTASSLQG 69 (235)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS------------SEEEECCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchhcc------------cccceeccccCchhHHHHHHHHHHHHhcC
Confidence 357999999999999999999999999999999865321 1233445666544332222 2
Q ss_pred cCCcEeEEecccCCC---CC---CCccchhhhhHHHHHHHHHHHhhhCC-CccEEEEeccceeeecCCCCCCCCeeeecC
Q 023515 80 DGCDGVCHTASPFYH---DA---KDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (281)
Q Consensus 80 ~~~d~Vih~a~~~~~---~~---~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~ 152 (281)
.++|++|||||.... .. .+.|+..+++|+.++..+.+++.+++ +..++|++||..+..+.+
T Consensus 70 g~iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~~~~~------------ 137 (235)
T d1ooea_ 70 SQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGPTP------------ 137 (235)
T ss_dssp CCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCT------------
T ss_pred CCeeEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhcCCcc------------
Confidence 258999999985221 11 23466789999999999999999864 336899999987765221
Q ss_pred CCCChhhhccCCchhhhhHHHHHHHHHHHHHhc-----CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCC
Q 023515 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK-----SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (281)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
....|+.+|++.+.+++.++.++ +++++.+.||.+.++. ..+.... ...
T Consensus 138 ----------~~~~Y~asKaal~~l~~~la~e~~~~~~~i~v~~i~Pg~~~T~~-----------~~~~~~~-----~~~ 191 (235)
T d1ooea_ 138 ----------SMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPM-----------NRKWMPN-----ADH 191 (235)
T ss_dssp ----------TBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHH-----------HHHHSTT-----CCG
T ss_pred ----------cccchHHHHHHHHHHHHHHHHHhccCCCceEEEEEecCcCcCcc-----------hhhhCcC-----Ccc
Confidence 12459999999999999998764 6788899999987643 1222111 123
Q ss_pred ccceeHHHHHHHHHHhhcCC
Q 023515 228 FGWVNVKDVANAHIQAFEVP 247 (281)
Q Consensus 228 ~~~i~~~D~a~~i~~~~~~~ 247 (281)
..|+.++|+++.++..+..+
T Consensus 192 ~~~~~~~~va~~~~~~l~~~ 211 (235)
T d1ooea_ 192 SSWTPLSFISEHLLKWTTET 211 (235)
T ss_dssp GGCBCHHHHHHHHHHHHHCG
T ss_pred ccCCCHHHHHHHHHHHhcCc
Confidence 45789999999998766543
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.87 E-value=1.1e-21 Score=158.13 Aligned_cols=209 Identities=22% Similarity=0.157 Sum_probs=148.0
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc------CCc
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------GCD 83 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------~~d 83 (281)
|++|||||+++||++++++|+++|++|++++|+++.. +....++|+++......+.. ..+
T Consensus 2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~--------------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 67 (241)
T d1uaya_ 2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREGE--------------DLIYVEGDVTREEDVRRAVARAQEEAPLF 67 (241)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCSS--------------SSEEEECCTTCHHHHHHHHHHHHHHSCEE
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcccc--------------cceEeeccccchhhhHHHHHhhhcccccc
Confidence 7899999999999999999999999999999986532 45677899988765555443 344
Q ss_pred EeEEeccc---------CCCCCCCccchhhhhHHHHHHHHHHHhhhC---------CCccEEEEeccceeeecCCCCCCC
Q 023515 84 GVCHTASP---------FYHDAKDPQVELLDPAVKGTLNVLNSCAKF---------PSIKRVVLTSSMAAVLNTGKPRTP 145 (281)
Q Consensus 84 ~Vih~a~~---------~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~---------~~~~~~v~~SS~~~~~~~~~~~~~ 145 (281)
.++++++. ......+.++..+++|+.+...++..+... .+..++|++||..+..+.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~~~----- 142 (241)
T d1uaya_ 68 AVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQI----- 142 (241)
T ss_dssp EEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCCT-----
T ss_pred chhhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhccCCC-----
Confidence 55555442 111122345678899999999888877542 1346899999988765321
Q ss_pred CeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCC
Q 023515 146 DVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT 222 (281)
Q Consensus 146 ~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~ 222 (281)
....|+.+|++.+.+++.++.++ |+++++|.||.|.++..... ......+.....+.
T Consensus 143 -----------------~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~V~PG~i~T~~~~~~---~~~~~~~~~~~~~~ 202 (241)
T d1uaya_ 143 -----------------GQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGL---PEKAKASLAAQVPF 202 (241)
T ss_dssp -----------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTS---CHHHHHHHHTTCCS
T ss_pred -----------------CchhhHHHHHHHHHHHHHHHHHHhhcCCceeeecCCcccccccchh---hhhHHHHHHhcCCC
Confidence 12459999999999999999864 89999999999988753322 12222233332222
Q ss_pred CCCCCccceeHHHHHHHHHHhhcCCCCCccEEEecCCCC
Q 023515 223 YPNVTFGWVNVKDVANAHIQAFEVPSANGRYCLVERVSH 261 (281)
Q Consensus 223 ~~~~~~~~i~~~D~a~~i~~~~~~~~~~g~~~~~~~~~t 261 (281)
. ..+..++|+|.++.+++....-.|+.+..++.++
T Consensus 203 ~----~R~g~pedvA~~v~fL~s~~~iTG~~i~VDGG~~ 237 (241)
T d1uaya_ 203 P----PRLGRPEEYAALVLHILENPMLNGEVVRLDGALR 237 (241)
T ss_dssp S----CSCCCHHHHHHHHHHHHHCTTCCSCEEEESTTCC
T ss_pred C----CCCcCHHHHHHHHHHHHhCCCCCCCEEEECCccc
Confidence 1 2366899999999999986555776665554444
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=99.86 E-value=7e-21 Score=157.22 Aligned_cols=221 Identities=15% Similarity=0.110 Sum_probs=144.3
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC-cchhhhhhhccCCCCcEEE-----------------EEcCCC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-PKKTRHLLALDGASERLQL-----------------FKANLL 70 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~-----------------~~~D~~ 70 (281)
++.++||||+++||+++++.|+++|++|++.+|+..+ .+.+........ ...... ..+|++
T Consensus 2 ~pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~dv~ 80 (284)
T d1e7wa_ 2 VPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARR-PNSAITVQADLSNVATAPVSGADGSAPVT 80 (284)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHS-TTCEEEEECCCSSSCBCCCC----CCCBC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHhhc-CCceEEEEeecccccccccccccccccCC
Confidence 6789999999999999999999999999998886532 333332221111 123333 445577
Q ss_pred CcCcHHHHhc-------CCcEeEEecccCCCC-----CCCcc--------------chhhhhHHHHHHHHHHHhhhC---
Q 023515 71 EEGSFDSIVD-------GCDGVCHTASPFYHD-----AKDPQ--------------VELLDPAVKGTLNVLNSCAKF--- 121 (281)
Q Consensus 71 ~~~~~~~~~~-------~~d~Vih~a~~~~~~-----~~~~~--------------~~~~~~n~~~~~~l~~~~~~~--- 121 (281)
+.++++++++ ++|++|||||..... ..+.+ ...+.+|+.++..+.+++.+.
T Consensus 81 ~~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~ 160 (284)
T d1e7wa_ 81 LFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAG 160 (284)
T ss_dssp HHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccchhhh
Confidence 7766776654 789999999863221 11122 136788999999998876542
Q ss_pred ------CCccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEE
Q 023515 122 ------PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTI 192 (281)
Q Consensus 122 ------~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~i 192 (281)
.+...+|+++|.....+.+ ....|+.+|.+.+.+++.++.++ |+++.+|
T Consensus 161 ~~~~~~~~~~~ii~~~s~~~~~~~~----------------------~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I 218 (284)
T d1e7wa_ 161 TPAKHRGTNYSIINMVDAMTNQPLL----------------------GYTIYTMAKGALEGLTRSAALELAPLQIRVNGV 218 (284)
T ss_dssp SCGGGSCSCEEEEEECCTTTTSCCT----------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEE
T ss_pred hHHHhcCCCCcccccccccccCCcc----------------------ceeeeccccccchhhhHHHHHHhCCcccccccc
Confidence 1234688888865443111 12459999999999999999864 8999999
Q ss_pred cCCcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCccEEEecCCCC
Q 023515 193 NPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVERVSH 261 (281)
Q Consensus 193 rp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~~~~t 261 (281)
.||.+-... ..............|..+ .+..++|+|+++++++.... -.|+.+..++.+|
T Consensus 219 ~PG~t~~~~-----~~~~~~~~~~~~~~pl~~----R~~~peeiA~~v~fL~S~~s~~itG~~i~VDGG~s 280 (284)
T d1e7wa_ 219 GPGLSVLVD-----DMPPAVWEGHRSKVPLYQ----RDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGGYS 280 (284)
T ss_dssp EESSBCCGG-----GSCHHHHHHHHTTCTTTT----SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred ccccccccc-----cCCHHHHHHHHhcCCCCC----CCCCHHHHHHHHHHHhCchhcCccCCeEEECcChh
Confidence 999753322 112233343333322222 36799999999999997543 3676665554443
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=99.85 E-value=5.2e-21 Score=157.24 Aligned_cols=224 Identities=14% Similarity=0.091 Sum_probs=142.4
Q ss_pred ccCCCeEEEeCCch--HHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 6 AAAGKVVCVTGASG--YIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 6 ~~~~~~ilItGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
++++|++|||||+| +||++++++|+++|++|++++|++...+.+.++... .....+.++|+++.++..++++
T Consensus 2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~~~l~~~---~~~~~~~~~d~~~~~~~~~~~~~~~ 78 (274)
T d2pd4a1 2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQE---LNSPYVYELDVSKEEHFKSLYNSVK 78 (274)
T ss_dssp TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHH---TTCCCEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhh---CCceeEeeecccchhhHHHHHHHHH
Confidence 36799999999887 799999999999999999999986433343333222 1356778999999887777664
Q ss_pred ----CCcEeEEecccCCCC------CCCccchhhh---hHHHHHHHHHHHhhhCCCccE-EEEeccceeeecCCCCCCCC
Q 023515 81 ----GCDGVCHTASPFYHD------AKDPQVELLD---PAVKGTLNVLNSCAKFPSIKR-VVLTSSMAAVLNTGKPRTPD 146 (281)
Q Consensus 81 ----~~d~Vih~a~~~~~~------~~~~~~~~~~---~n~~~~~~l~~~~~~~~~~~~-~v~~SS~~~~~~~~~~~~~~ 146 (281)
.+|++|||++..... ....+..... ++..+...+.....+..+... ++.+|+.+...+..
T Consensus 79 ~~~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~~~~------ 152 (274)
T d2pd4a1 79 KDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMA------ 152 (274)
T ss_dssp HHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCT------
T ss_pred HHcCCCCeEEeecccccccccccccccccchhhhhhhccccccccccccccccccccCcceeeecccccccccc------
Confidence 689999999863221 1122212222 222234444444444323334 44444443322110
Q ss_pred eeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCCC
Q 023515 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY 223 (281)
Q Consensus 147 ~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~ 223 (281)
....|+.+|.+.+.+++.++.++ |+++++|.||.+.++....... ............
T Consensus 153 ----------------~~~~y~asK~al~~ltr~lA~e~~~~GIrvN~I~PG~v~T~~~~~~~~-~~~~~~~~~~~~--- 212 (274)
T d2pd4a1 153 ----------------HYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIAD-FRMILKWNEINA--- 212 (274)
T ss_dssp ----------------TCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTT-HHHHHHHHHHHS---
T ss_pred ----------------cchhhhHHHHHHHHHHHhhHHHhcCcCceecccccCcccCccccccCc-hHHHHHHHhhhh---
Confidence 12459999999999999988764 8999999999998875432211 111111111111
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCC--CCccEEEecCCC
Q 023515 224 PNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVERVS 260 (281)
Q Consensus 224 ~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~~~~ 260 (281)
....+..++|+|.++.+++.... -.|+.+..++..
T Consensus 213 --p~~r~~~pedIA~~v~fL~S~~s~~itG~~i~vDGG~ 249 (274)
T d2pd4a1 213 --PLRKNVSLEEVGNAGMYLLSSLSSGVSGEVHFVDAGY 249 (274)
T ss_dssp --TTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred --hccCCcCHHHHHHHHHHHhChhhCCCcCceEEECCCh
Confidence 12347899999999999998643 367655554443
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.83 E-value=7e-20 Score=152.10 Aligned_cols=228 Identities=12% Similarity=0.029 Sum_probs=143.8
Q ss_pred ccCCCeEEEeCCch--HHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhh------h---ccCCCC---cEEEEEcCC--
Q 023515 6 AAAGKVVCVTGASG--YIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLL------A---LDGASE---RLQLFKANL-- 69 (281)
Q Consensus 6 ~~~~~~ilItGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~------~---~~~~~~---~~~~~~~D~-- 69 (281)
.+++|++|||||+| +||+++++.|+++|++|++.+|++.......... . ...... ++..+..++
T Consensus 5 ~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (297)
T d1d7oa_ 5 DLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVFDN 84 (297)
T ss_dssp CCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTCCS
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhhccc
Confidence 47899999999987 8999999999999999999988642111100000 0 000001 122222222
Q ss_pred ----------------CCcCcHHHHhc-------CCcEeEEecccCC-------CCCCCccchhhhhHHHHHHHHHHHhh
Q 023515 70 ----------------LEEGSFDSIVD-------GCDGVCHTASPFY-------HDAKDPQVELLDPAVKGTLNVLNSCA 119 (281)
Q Consensus 70 ----------------~~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~~~~~~~~n~~~~~~l~~~~~ 119 (281)
.+....+++++ ++|++|||||... +...+.|...+++|+.++..+++++.
T Consensus 85 ~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~ 164 (297)
T d1d7oa_ 85 PEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHFL 164 (297)
T ss_dssp GGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHG
T ss_pred cccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhhhhhHHH
Confidence 23333344433 7899999998522 22344577899999999999999999
Q ss_pred hCCC-ccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh----cCCcEEEEcC
Q 023515 120 KFPS-IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE----KSIDLVTINP 194 (281)
Q Consensus 120 ~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~g~~~~~irp 194 (281)
..+. .+..+.+++.+...... + ....|+.+|.+.+.+++.++.+ +|+++++|.|
T Consensus 165 ~~~~~~g~~~~~~~~~~~~~~~-~--------------------~~~~y~~aKaa~~~l~~~~a~e~~~~~gIrvN~I~P 223 (297)
T d1d7oa_ 165 PIMNPGGASISLTYIASERIIP-G--------------------YGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISA 223 (297)
T ss_dssp GGEEEEEEEEEEECGGGTSCCT-T--------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred HHhhcCCcceeeeehhhccccc-c--------------------cccceecccccccccccccchhccccceEEeccccc
Confidence 8632 23455666544332111 0 1234999999999888776554 4899999999
Q ss_pred CcccCCCCCCCCCccHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCccEEEecCCC
Q 023515 195 AMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVERVS 260 (281)
Q Consensus 195 ~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~~~~ 260 (281)
|.+.++..... ..............| ...+..++|+|.++++++.... -.|+.+..++.+
T Consensus 224 G~i~T~~~~~~-~~~~~~~~~~~~~~P-----lgR~~~peevA~~v~fL~S~~a~~itGq~i~vDGG~ 285 (297)
T d1d7oa_ 224 GPLGSRAAKAI-GFIDTMIEYSYNNAP-----IQKTLTADEVGNAAAFLVSPLASAITGATIYVDNGL 285 (297)
T ss_dssp CCCBCCCSSCC-SHHHHHHHHHHHHSS-----SCCCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTG
T ss_pred ccccchhhhhc-cCCHHHHHHHHhCCC-----CCCCCCHHHHHHHHHHHhCchhcCCcCceEEECcCH
Confidence 99998865432 122233333333221 2236799999999999997543 367665554433
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.83 E-value=3e-19 Score=145.85 Aligned_cols=219 Identities=17% Similarity=0.162 Sum_probs=142.0
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCc-chhhhhhhccCCCCcEEEEEcCCCCcCcHH----HHh-----
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP-KKTRHLLALDGASERLQLFKANLLEEGSFD----SIV----- 79 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~----~~~----- 79 (281)
+++|||||+++||++++++|+++|++|++++|+.++. +.+..+..... .....+.+.|..+....+ +++
T Consensus 2 ~vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (266)
T d1mxha_ 2 PAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAAR-AGSAVLCKGDLSLSSSLLDCCEDIIDCSFR 80 (266)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHS-TTCEEEEECCCSSSTTHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHHHhhc-CCceEEEecccccchhHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999986543 33333222211 246777777776544322 222
Q ss_pred --cCCcEeEEecccCCCCC----------------CCccchhhhhHHHHHHHHHHHhhhCC--------CccEEEEeccc
Q 023515 80 --DGCDGVCHTASPFYHDA----------------KDPQVELLDPAVKGTLNVLNSCAKFP--------SIKRVVLTSSM 133 (281)
Q Consensus 80 --~~~d~Vih~a~~~~~~~----------------~~~~~~~~~~n~~~~~~l~~~~~~~~--------~~~~~v~~SS~ 133 (281)
.++|++|||||...... ...+......|+.+...........+ ....++.+|+.
T Consensus 81 ~~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (266)
T d1mxha_ 81 AFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDA 160 (266)
T ss_dssp HHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEECCG
T ss_pred HhCCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccccccccchhhhhc
Confidence 26999999999633211 01123455667777676666666542 12356666665
Q ss_pred eeeecCCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccH
Q 023515 134 AAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSA 210 (281)
Q Consensus 134 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~ 210 (281)
......+ ....|+.||.+.+.+++.++.++ |++++.|.||.+.++...+ .
T Consensus 161 ~~~~~~~----------------------~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~t~~~~~-----~ 213 (266)
T d1mxha_ 161 MTDLPLP----------------------GFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLPPAMP-----Q 213 (266)
T ss_dssp GGGSCCT----------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCCSSSC-----H
T ss_pred cccccCc----------------------chhhhhhhHHHHhhhHHHHHHHhCccCcEEEEeccCcEeccccCC-----H
Confidence 4432111 13459999999999999998864 8999999999998765322 1
Q ss_pred HHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCccEEEecCCC
Q 023515 211 AAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVERVS 260 (281)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~~~~ 260 (281)
........ ..+.+ +.+..++|+|.++++++.... -.|+.+..++.+
T Consensus 214 ~~~~~~~~-~~pl~---r~~~~peeva~~v~fL~s~~s~~itG~~i~vDGG~ 261 (266)
T d1mxha_ 214 ETQEEYRR-KVPLG---QSEASAAQIADAIAFLVSKDAGYITGTTLKVDGGL 261 (266)
T ss_dssp HHHHHHHT-TCTTT---SCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred HHHHHHHh-cCCCC---CCCCCHHHHHHHHHHHhCchhCCccCCeEEECccH
Confidence 22222322 21111 235689999999999998654 367655554443
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.82 E-value=6.7e-20 Score=154.21 Aligned_cols=170 Identities=10% Similarity=0.070 Sum_probs=119.0
Q ss_pred CCeEEEeC--CchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhh---------ccC-CCCcEEEEEc---------
Q 023515 9 GKVVCVTG--ASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLA---------LDG-ASERLQLFKA--------- 67 (281)
Q Consensus 9 ~~~ilItG--atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~---------~~~-~~~~~~~~~~--------- 67 (281)
+|.+|||| ++.+||+++++.|+++|.+|++..+............. ... .........+
T Consensus 2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (329)
T d1uh5a_ 2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAND 81 (329)
T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCSSGGG
T ss_pred CcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcccccceehhhcc
Confidence 57899999 56799999999999999999998876432211111100 000 0011223333
Q ss_pred -----------CCCCcCcHHHHhc-------CCcEeEEecccCC-------CCCCCccchhhhhHHHHHHHHHHHhhhCC
Q 023515 68 -----------NLLEEGSFDSIVD-------GCDGVCHTASPFY-------HDAKDPQVELLDPAVKGTLNVLNSCAKFP 122 (281)
Q Consensus 68 -----------D~~~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~ 122 (281)
|+.+.+.++.+++ ++|++||+||... +...+.|...+++|+.++.++++++.+++
T Consensus 82 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~~~m 161 (329)
T d1uh5a_ 82 IDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNIM 161 (329)
T ss_dssp CCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGE
T ss_pred cchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHHHhhc
Confidence 4556666666544 7899999998532 22335577899999999999999999874
Q ss_pred C-ccEEEEeccceeeecCCCCCCCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHh----cCCcEEEEcCCcc
Q 023515 123 S-IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE----KSIDLVTINPAMV 197 (281)
Q Consensus 123 ~-~~~~v~~SS~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~g~~~~~irp~~v 197 (281)
+ .+++|++||.++..+.++ +...|+.+|.+.+.+++.++.+ +|+++++|.||.|
T Consensus 162 ~~~GsIv~iss~~~~~~~p~---------------------y~~~y~asKaal~~ltr~lA~Ela~~~gIRVNaI~PG~i 220 (329)
T d1uh5a_ 162 KPQSSIISLTYHASQKVVPG---------------------YGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPL 220 (329)
T ss_dssp EEEEEEEEEECGGGTSCCTT---------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCC
T ss_pred ccccccccceeehhcccccc---------------------cchhhhhhhccccccchhhHHHHhcccCcEEEEEecCcc
Confidence 3 357999998766542110 1235999999999999988864 4899999999998
Q ss_pred cC
Q 023515 198 IG 199 (281)
Q Consensus 198 ~g 199 (281)
-+
T Consensus 221 ~T 222 (329)
T d1uh5a_ 221 KS 222 (329)
T ss_dssp CC
T ss_pred cc
Confidence 76
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=99.82 E-value=4e-20 Score=151.38 Aligned_cols=222 Identities=11% Similarity=0.087 Sum_probs=144.1
Q ss_pred ccCCCeEEEeCCc--hHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc---
Q 023515 6 AAAGKVVCVTGAS--GYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (281)
Q Consensus 6 ~~~~~~ilItGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 80 (281)
+|++|++|||||+ .+||++++++|+++|++|++++|+..+.. ++..+. ...+...+++|+++.++...+++
T Consensus 3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~--~~~~~~--~~~~~~~~~~dv~~~~~~~~~~~~v~ 78 (268)
T d2h7ma1 3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLI--QRITDR--LPAKAPLLELDVQNEEHLASLAGRVT 78 (268)
T ss_dssp TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHH--HHHHTT--SSSCCCEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHH--HHHHHH--cCCceeeEeeecccccccccccchhh
Confidence 3679999999965 46999999999999999999998765321 111111 12467788999999876655543
Q ss_pred -------CCcEeEEecccCCCC----------CCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccceeeecCCCCC
Q 023515 81 -------GCDGVCHTASPFYHD----------AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPR 143 (281)
Q Consensus 81 -------~~d~Vih~a~~~~~~----------~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~ 143 (281)
.+|+++|+|+..... ....+...+.+|+.+.......+....+....+.++|.......+
T Consensus 79 ~~~~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~~p--- 155 (268)
T d2h7ma1 79 EAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRAMP--- 155 (268)
T ss_dssp HHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSSCCT---
T ss_pred hccccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhcccccccccccccccccCc---
Confidence 479999999853211 112234556777788887887777653334455555543332111
Q ss_pred CCCeeeecCCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCC----CCCCcc----HHH
Q 023515 144 TPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQ----PTLNTS----AAA 212 (281)
Q Consensus 144 ~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~----~~~~~~----~~~ 212 (281)
....|+.+|.+.+.+++.++.++ |+++++|.||.+.++... ...... ...
T Consensus 156 -------------------~~~~y~~sK~a~~~ltr~lA~e~~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~ 216 (268)
T d2h7ma1 156 -------------------AYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQL 216 (268)
T ss_dssp -------------------TTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHH
T ss_pred -------------------ccchhhccccchhhccccchhhhhccCCcceEEecCCCCChhhhhhccchhhhhhccchHH
Confidence 12459999999999999998864 899999999999875311 001110 111
Q ss_pred HHHH-HhCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCccEEEec
Q 023515 213 VLSL-IKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVE 257 (281)
Q Consensus 213 ~~~~-~~~~~~~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~ 257 (281)
+.+. .... ...+.+..++|+|+++.+++.... -.|+.+..+
T Consensus 217 ~~~~~~~~~----pl~rr~~~p~dva~~v~fL~Sd~a~~iTG~~i~vD 260 (268)
T d2h7ma1 217 LEEGWDQRA----PIGWNMKDATPVAKTVCALLSDWLPATTGDIIYAD 260 (268)
T ss_dssp HHHHHHHHC----TTCCCTTCCHHHHHHHHHHHSSSCTTCCSEEEEES
T ss_pred HHHHHHhcC----CCCCCCCCHHHHHHHHHHHhCchhcCccCCEEEEC
Confidence 1111 1111 112346789999999999997533 357655544
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.77 E-value=4.2e-18 Score=138.25 Aligned_cols=220 Identities=18% Similarity=0.105 Sum_probs=128.4
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHH--------hc
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI--------VD 80 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~--------~~ 80 (281)
||+||||||+++||++++++|+++|++|++++|+..+. ..|+.+.+..... .+
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~~-------------------~~d~~~~~~~~~~~~~~~~~~~~ 61 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEV-------------------IADLSTAEGRKQAIADVLAKCSK 61 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSE-------------------ECCTTSHHHHHHHHHHHHTTCTT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHHH-------------------HHHhcCHHHHHHHHHHHHHHhCC
Confidence 68999999999999999999999999999999976432 1344443322221 12
Q ss_pred CCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhC---CCccEEEEeccceeeecCCCCCCCCeeeec------
Q 023515 81 GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDE------ 151 (281)
Q Consensus 81 ~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~e------ 151 (281)
.+|+++|+|+.... .+.+.....+|..+...+.+...+. ........+++........ ...+......
T Consensus 62 ~id~lv~~Ag~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~ 138 (257)
T d1fjha_ 62 GMDGLVLCAGLGPQ--TKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAF-DKNPLALALEAGEEAK 138 (257)
T ss_dssp CCSEEEECCCCCTT--CSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCG-GGCTTHHHHHHTCHHH
T ss_pred CCcEEEEcCCCCCc--HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcceeeeeccccchhh-hhhhhhhhccCCcEEE
Confidence 58999999986443 3445677888888888877766542 1334455555543322100 0000000000
Q ss_pred ------CCCCChhhhccCCchhhhhHHHHHHHHHHHHHhc---CCcEEEEcCCcccCCCCCCCCCccHHHHHHHHhCCCC
Q 023515 152 ------TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT 222 (281)
Q Consensus 152 ------~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~irp~~v~g~~~~~~~~~~~~~~~~~~~~~~~ 222 (281)
.....+ ....|+.+|.+.+.+++.++.++ |+++++|.||.+.+|....... .............
T Consensus 139 i~s~~~~~~~~~-----~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~-~~~~~~~~~~~~~- 211 (257)
T d1fjha_ 139 ARAIVEHAGEQG-----GNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQ-DPRYGESIAKFVP- 211 (257)
T ss_dssp HHHHHHTCCTTH-----HHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC----------------------CCC-
T ss_pred EeeehhccCCCc-----chHHHHHHhhhhhccccccccccccccccccccccCCcCChhHHhhcC-CHHHHHHHHhcCC-
Confidence 000000 11249999999999999998764 8999999999998876432111 0011111111111
Q ss_pred CCCCCccceeHHHHHHHHHHhhcCCC--CCccEEEecCCC
Q 023515 223 YPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVERVS 260 (281)
Q Consensus 223 ~~~~~~~~i~~~D~a~~i~~~~~~~~--~~g~~~~~~~~~ 260 (281)
+ ...+..++|+|.++.+++.... -.|+.+..++.+
T Consensus 212 -P--lgR~g~p~eva~~v~fL~S~~s~~itG~~i~vDGG~ 248 (257)
T d1fjha_ 212 -P--MGRRAEPSEMASVIAFLMSPAASYVHGAQIVIDGGI 248 (257)
T ss_dssp -S--TTSCCCTHHHHHHHHHHTSGGGTTCCSCEEEESTTH
T ss_pred -C--CCCCcCHHHHHHHHHHHhCchhCCccCceEEeCCCc
Confidence 1 2236799999999999997543 367665555443
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=99.53 E-value=8.4e-16 Score=118.79 Aligned_cols=107 Identities=14% Similarity=0.100 Sum_probs=82.7
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
++++|+|+||||+|+||+++++.|+++|++|++++|+.++...+.+..... .++.+..+|+.+.+.+.+++.++|+|
T Consensus 20 ~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~iDil 96 (191)
T d1luaa1 20 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKR---FKVNVTAAETADDASRAEAVKGAHFV 96 (191)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH---HTCCCEEEECCSHHHHHHHTTTCSEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhc---cchhhhhhhcccHHHHHHHhcCcCee
Confidence 468999999999999999999999999999999999987665554433221 24567889999999999999999999
Q ss_pred EEeccc-CCCCCCCccchhhhhHHHHHHHHH
Q 023515 86 CHTASP-FYHDAKDPQVELLDPAVKGTLNVL 115 (281)
Q Consensus 86 ih~a~~-~~~~~~~~~~~~~~~n~~~~~~l~ 115 (281)
|||||. +.....+.|+..+++|+.+..+.+
T Consensus 97 in~Ag~g~~~~~~e~~~~~~~~nv~~~~~~~ 127 (191)
T d1luaa1 97 FTAGAIGLELLPQAAWQNESSIEIVADYNAQ 127 (191)
T ss_dssp EECCCTTCCCBCHHHHHTCTTCCEEEECCCS
T ss_pred eecCccccccCCHHHHHhhhcceeehhHhhH
Confidence 999986 333334455566666665555443
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.74 E-value=1.6e-08 Score=72.21 Aligned_cols=71 Identities=14% Similarity=0.132 Sum_probs=58.9
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHH-hcCCcEeEEe
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI-VDGCDGVCHT 88 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~Vih~ 88 (281)
|+|+|.|+ |.+|+.+++.|.++|++|++++++++..+.+... .+..++.||.+|++.++++ ++.+|.++-+
T Consensus 1 M~IvI~G~-G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~-------~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~ 72 (132)
T d1lssa_ 1 MYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE-------IDALVINGDCTKIKTLEDAGIEDADMYIAV 72 (132)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------CSSEEEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh-------hhhhhccCcccchhhhhhcChhhhhhhccc
Confidence 58999997 9999999999999999999999987655543322 2467899999999988887 5688988865
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.72 E-value=2.5e-08 Score=72.06 Aligned_cols=114 Identities=20% Similarity=0.155 Sum_probs=77.8
Q ss_pred eEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEe
Q 023515 11 VVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~ 88 (281)
||.|+||+|.+|++++..|..+| .++++++..+.+...+ .+. .. .-+.....-+ ...+..+.++++|+||..
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~-Dl~--~~--~~~~~~~~~~-~~~~~~~~~~~aDivVit 75 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAA-DLS--HI--ETRATVKGYL-GPEQLPDCLKGCDVVVIP 75 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHH-HHT--TS--SSSCEEEEEE-SGGGHHHHHTTCSEEEEC
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhH-HHh--hh--hhhcCCCeEE-cCCChHHHhCCCCEEEEC
Confidence 79999999999999999999888 5788888765333221 111 11 0111111112 235567778899999999
Q ss_pred cccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 89 ASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 89 a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
||......+. ..+.++.|+...+.+++.+.++ ..+.++.+.|
T Consensus 76 ag~~~~~g~s-R~~ll~~N~~i~~~i~~~i~~~-~p~~iiivvt 117 (144)
T d1mlda1 76 AGVPRKPGMT-RDDLFNTNATIVATLTAACAQH-CPDAMICIIS 117 (144)
T ss_dssp CSCCCCTTCC-GGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECS
T ss_pred CCcCCCCCCC-cchHHHHHHHHHHHHHHHHHhc-CCCeEEEEec
Confidence 9975544343 3488999999999999999998 4444444444
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.66 E-value=5.4e-08 Score=70.44 Aligned_cols=116 Identities=11% Similarity=0.112 Sum_probs=73.6
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCCcchhhhhhhc-cCCCCcEEEEEcCCCCcCcHHHHhcCCc
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLAL-DGASERLQLFKANLLEEGSFDSIVDGCD 83 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~~d 83 (281)
.++|||.|.|+ |++|+.++..|+.+| .++++++++++........... ...........+|. + .++++|
T Consensus 3 ~~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~---~----~~~~ad 74 (146)
T d1ez4a1 3 PNHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEY---S----DCKDAD 74 (146)
T ss_dssp TTBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCG---G----GGTTCS
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccH---H----Hhcccc
Confidence 34789999995 999999999999987 6899999876443221111111 01112234444443 2 356899
Q ss_pred EeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 84 GVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 84 ~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
+||.+||........ ..+..+.|+.-.+.+.+.+.++ ..+.++.+.|
T Consensus 75 ivvitag~~~~~g~~-r~~l~~~N~~i~~~~~~~i~~~-~p~aivivvt 121 (146)
T d1ez4a1 75 LVVITAGAPQKPGES-RLDLVNKNLNILSSIVKPVVDS-GFDGIFLVAA 121 (146)
T ss_dssp EEEECCCC-----------CHHHHHHHHHHHHHHHHHT-TCCSEEEECS
T ss_pred EEEEecccccCCCCC-HHHHHHHHHHHHHHHHHHHhhc-CCCcEEEEeC
Confidence 999999865543333 3378889999999999999998 4444554444
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.55 E-value=3.5e-07 Score=66.29 Aligned_cols=117 Identities=14% Similarity=0.135 Sum_probs=77.6
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCCcchhhhhhh--ccCCCCcEEEEEcCCCCcCcHHHHhcC
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLA--LDGASERLQLFKANLLEEGSFDSIVDG 81 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~~~D~~~~~~~~~~~~~ 81 (281)
+..++||.|+|| |.+|++++..|+.+| .++.++++.++.......... ............+|. +.+++
T Consensus 3 ~~~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~-------~~l~d 74 (148)
T d1ldna1 3 NNGGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY-------DDCRD 74 (148)
T ss_dssp TTTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG-------GGTTT
T ss_pred CCCCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCH-------HHhcc
Confidence 345789999996 999999999999987 489999987654322111111 111112333333333 34668
Q ss_pred CcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEec
Q 023515 82 CDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131 (281)
Q Consensus 82 ~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S 131 (281)
+|+||.+|+......... .+.++.|..-.+.+.+.+.++.+...++.+|
T Consensus 75 aDvvvitag~~~~~~~~R-~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvt 123 (148)
T d1ldna1 75 ADLVVICAGANQKPGETR-LDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123 (148)
T ss_dssp CSEEEECCSCCCCTTTCS-GGGHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred ceeEEEecccccccCcch-hHHHHHHHHHHHHHHHHHHhhCCCceEEEec
Confidence 999999998755444333 3788899999999999999873334444443
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.53 E-value=3.6e-07 Score=65.82 Aligned_cols=115 Identities=17% Similarity=0.133 Sum_probs=74.6
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCC--cchhhhhhh--ccCCCCcEEEEEcCCCCcCcHHHHhcCCc
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPND--PKKTRHLLA--LDGASERLQLFKANLLEEGSFDSIVDGCD 83 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~--~~~~~~~~~--~~~~~~~~~~~~~D~~~~~~~~~~~~~~d 83 (281)
|||.|+||+|.+|.+++..|+.+| .++.++++++.. .+....... ......+.+....--.+ .+.++++|
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d----~~~l~~aD 76 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDEN----LRIIDESD 76 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTC----GGGGTTCS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcch----HHHhccce
Confidence 579999999999999999999998 589999987532 111111111 11111122221111112 23566899
Q ss_pred EeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEe
Q 023515 84 GVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLT 130 (281)
Q Consensus 84 ~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~ 130 (281)
+||-+||......+. ..+.++.|..-.+.+.+...++ ..+.++.+
T Consensus 77 vVVitAG~~~~~g~s-R~dl~~~Na~iv~~i~~~i~~~-~~~~iivV 121 (145)
T d1hyea1 77 VVIITSGVPRKEGMS-RMDLAKTNAKIVGKYAKKIAEI-CDTKIFVI 121 (145)
T ss_dssp EEEECCSCCCCTTCC-HHHHHHHHHHHHHHHHHHHHHH-CCCEEEEC
T ss_pred EEEEecccccCCCCC-hhhhhhhhHHHHHHHHHHHhcc-CCCeEEEE
Confidence 999999975544333 3488899999999999999988 44444433
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.50 E-value=2.7e-07 Score=66.54 Aligned_cols=116 Identities=18% Similarity=0.102 Sum_probs=74.6
Q ss_pred CeEEEeCCchHHHHHHHHHHHH-CC--CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 10 KVVCVTGASGYIASWLVKLLLS-RG--YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~-~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
|||.|+|++|.+|++++-.|.. .+ .++.+++..+ .........+.......... +....+.+ .+++.|+||
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-~~~g~a~Dl~h~~~~~~~~~----~~~~~~~~-~~~~aDvvv 74 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKG----FSGEDATP-ALEGADVVL 74 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-THHHHHHHHHTSCSSCEEEE----ECSSCCHH-HHTTCSEEE
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc-cchhHHHHHHCCccccCCcE----EEcCCCcc-ccCCCCEEE
Confidence 5899999999999999988764 34 7899998754 32211111111110111221 12223333 577999999
Q ss_pred EecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
.+||........ ..++++.|..-.+.+.+.+.++.+...+|.+|.
T Consensus 75 itaG~~~k~g~~-R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtN 119 (145)
T d2cmda1 75 ISAGVRRKPGMD-RSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119 (145)
T ss_dssp ECCSCCCCTTCC-GGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred ECCCccCCCCcc-hhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccC
Confidence 999975544443 348899999999999999999843344555554
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=98.37 E-value=2.7e-07 Score=69.08 Aligned_cols=74 Identities=19% Similarity=0.250 Sum_probs=57.3
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEe
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~ 88 (281)
.|+|+|.|| |++|+++++.|.++|++|++++|+.++...+.... ........+..+.....+.+...|.++.+
T Consensus 2 ~K~IliiGa-G~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~~i~~ 74 (182)
T d1e5qa1 2 TKSVLMLGS-GFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGV------QHSTPISLDVNDDAALDAEVAKHDLVISL 74 (182)
T ss_dssp CCEEEEECC-STTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTC------TTEEEEECCTTCHHHHHHHHTTSSEEEEC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcc------cccccccccccchhhhHhhhhccceeEee
Confidence 579999987 99999999999999999999999988766644321 23455556666666677778888888865
Q ss_pred c
Q 023515 89 A 89 (281)
Q Consensus 89 a 89 (281)
.
T Consensus 75 ~ 75 (182)
T d1e5qa1 75 I 75 (182)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=98.36 E-value=2.3e-07 Score=66.15 Aligned_cols=71 Identities=23% Similarity=0.145 Sum_probs=57.0
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHH-hcCCcEeEEe
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI-VDGCDGVCHT 88 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~Vih~ 88 (281)
|+++|.|+ |.+|+++++.|.++|++|++++.+++..+.+.. .....+.+|.++++.+.++ ++++|.||-+
T Consensus 1 k~~iIiG~-G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~--------~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~ 71 (134)
T d2hmva1 1 KQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS--------YATHAVIANATEENELLSLGIRNFEYVIVA 71 (134)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTT--------TCSEEEECCTTCTTHHHHHTGGGCSEEEEC
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHH--------hCCcceeeecccchhhhccCCccccEEEEE
Confidence 56888986 999999999999999999999988765544322 2456788999999998887 6789988754
Q ss_pred c
Q 023515 89 A 89 (281)
Q Consensus 89 a 89 (281)
.
T Consensus 72 ~ 72 (134)
T d2hmva1 72 I 72 (134)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=98.35 E-value=6.6e-07 Score=64.25 Aligned_cols=113 Identities=15% Similarity=0.137 Sum_probs=70.1
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCCcchhhhhhhcc-CCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALD-GASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+||.|.|+ |.+|+.++-.|+.++ .++.+++++++........++.. ..........+| .+.++++|+||
T Consensus 2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~-------~~~~~~adivv 73 (142)
T d1y6ja1 2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGD-------YSDVKDCDVIV 73 (142)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--C-------GGGGTTCSEEE
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCc-------HHHhCCCceEE
Confidence 57999997 999999999999997 58999998876543322222111 111233322222 23467899999
Q ss_pred EecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEec
Q 023515 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131 (281)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S 131 (281)
-.||........ ....++.|..-.+.+.+.+.++.+...++.+|
T Consensus 74 itag~~~~~~~~-r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvt 117 (142)
T d1y6ja1 74 VTAGANRKPGET-RLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS 117 (142)
T ss_dssp ECCCC------C-HHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS
T ss_pred EecccccCcCcc-hhHHhhHHHHHHHHHHHHhhccCCCceEEEec
Confidence 999865543333 34788999999999999999973333344433
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=98.35 E-value=1.8e-06 Score=61.75 Aligned_cols=111 Identities=14% Similarity=0.022 Sum_probs=72.6
Q ss_pred eEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCC--cchh-hhhh-hccCCCCcEEEEEcCCCCcCcHHHHhcCCcE
Q 023515 11 VVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPND--PKKT-RHLL-ALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~--~~~~-~~~~-~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~ 84 (281)
||.|+||+|.+|++++..|+.++ .++.+++....+ .... .++. .... ..+.+...+|. + .++++|+
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~-~~~~~i~~~~~---~----~~~~aDi 73 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAY-DSNTRVRQGGY---E----DTAGSDV 73 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTT-TCCCEEEECCG---G----GGTTCSE
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccc-cCCceEeeCCH---H----HhhhcCE
Confidence 79999999999999999999998 478888863221 1110 1111 0111 12334333433 2 2468999
Q ss_pred eEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEe
Q 023515 85 VCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLT 130 (281)
Q Consensus 85 Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~ 130 (281)
||-.||......+ ...+.++.|..-.+.+.+...++.....++.+
T Consensus 74 VvitaG~~~~~g~-~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivv 118 (142)
T d1o6za1 74 VVITAGIPRQPGQ-TRIDLAGDNAPIMEDIQSSLDEHNDDYISLTT 118 (142)
T ss_dssp EEECCCCCCCTTC-CHHHHHHHHHHHHHHHHHHHHTTCSCCEEEEC
T ss_pred EEEecccccccCC-chhhHHHHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 9999986554333 34488999999999999999998333334444
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=98.32 E-value=5.8e-07 Score=65.50 Aligned_cols=119 Identities=19% Similarity=0.122 Sum_probs=76.5
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhhhhc--cCCCCcEEEEEcCCCCcCcHHHHhcCCc
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLAL--DGASERLQLFKANLLEEGSFDSIVDGCD 83 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~~~d 83 (281)
.+.+||.|.|+ |.+|+.++..|...+ .++++++.+++.........+. ....... .+......++.++++|
T Consensus 5 ~k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~-----~~~~~~~~~~~~~~ad 78 (154)
T d1pzga1 5 QRRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNV-----SVRAEYSYEAALTGAD 78 (154)
T ss_dssp SCCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCC-----CEEEECSHHHHHTTCS
T ss_pred cCCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCee-----EEeccCchhhhhcCCC
Confidence 35789999997 999999998888878 5899888877543332111110 0000000 1111234567788999
Q ss_pred EeEEecccCCCCCC----CccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 84 GVCHTASPFYHDAK----DPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 84 ~Vih~a~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
+||-.|+......+ ....+.++.|..-...+++.+.++ ..+.++.+.|
T Consensus 79 iVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~-~p~aiviivs 130 (154)
T d1pzga1 79 CVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKY-CPKTFIIVVT 130 (154)
T ss_dssp EEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECC
T ss_pred eEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhc-CCCcEEEEeC
Confidence 99999986443221 123477888999999999999998 4444444444
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=98.26 E-value=1.4e-06 Score=62.67 Aligned_cols=113 Identities=12% Similarity=-0.035 Sum_probs=73.9
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCCcchhhhhhhcc--CCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALD--GASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
|||.|+|| |.+|++++..|+..| .++.++++++............. ......++... .+ .+.++++|+|
T Consensus 1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~--~~----~~~~~dadvv 73 (142)
T d1guza1 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS--ND----YADTANSDIV 73 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEE--SC----GGGGTTCSEE
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEec--CC----HHHhcCCeEE
Confidence 57999996 999999999999987 68999998876543321111110 00112222211 12 2346789999
Q ss_pred EEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEe
Q 023515 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLT 130 (281)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~ 130 (281)
|-+||......... .+.++.|..-.+.+.+.+.++.+...++.+
T Consensus 74 vitag~~~~~g~~r-~~l~~~N~~i~~~i~~~i~~~~p~aivivv 117 (142)
T d1guza1 74 IITAGLPRKPGMTR-EDLLMKNAGIVKEVTDNIMKHSKNPIIIVV 117 (142)
T ss_dssp EECCSCCCCTTCCH-HHHHHHHHHHHHHHHHHHHHHCSSCEEEEC
T ss_pred EEEEecCCCCCCch-HHHHHHHHHHHHHHHHHhhccCCCeEEEEe
Confidence 99998755444443 378889999999999999987333334443
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=98.22 E-value=2.2e-06 Score=62.45 Aligned_cols=118 Identities=18% Similarity=0.071 Sum_probs=71.7
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCC----E-E-EEEEcCCCCcchhhhhhh--ccCCCCcEEEEEcCCCCcCcHHHHhc
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGY----T-V-KASVRDPNDPKKTRHLLA--LDGASERLQLFKANLLEEGSFDSIVD 80 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~----~-V-~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~~~D~~~~~~~~~~~~ 80 (281)
.+||.|+||+|++|++++..|...+. . + +-+.........+..+.. ..........+.. .....+.++
T Consensus 4 p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 79 (154)
T d1y7ta1 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEA----TDDPKVAFK 79 (154)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEE----ESCHHHHTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhcccccccccccc----CCchhhhcc
Confidence 45899999999999999999987652 1 1 111212222222222110 1111112222222 233467788
Q ss_pred CCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCc-cEEEEec
Q 023515 81 GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSI-KRVVLTS 131 (281)
Q Consensus 81 ~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~v~~S 131 (281)
++|+||-+||......... .+.++.|+.-.+.+.+.+.++.+. ..++.+|
T Consensus 80 ~advViitaG~~~~pg~~r-~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvs 130 (154)
T d1y7ta1 80 DADYALLVGAAPRKAGMER-RDLLQVNGKIFTEQGRALAEVAKKDVKVLVVG 130 (154)
T ss_dssp TCSEEEECCCCCCCTTCCH-HHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred cccEEEeecCcCCCCCCcH-HHHHHHHHHHHHHHHHHHHHhCCCCcEEEEec
Confidence 9999999999866544443 488899999999999999986232 3344444
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=98.19 E-value=1.9e-06 Score=64.62 Aligned_cols=105 Identities=16% Similarity=0.079 Sum_probs=65.8
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEec
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a 89 (281)
|||.|.|+ |.+|..++..|.++||+|++++|++++.+.+........................++.++++++|+||-+.
T Consensus 2 k~iaIiGa-G~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v 80 (184)
T d1bg6a2 2 KTYAVLGL-GNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV 80 (184)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE
Confidence 68999996 99999999999999999999999876554443321111001112222222222345788889999999764
Q ss_pred ccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 90 SPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 90 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
. . ..+..+++.++++....++|.+++
T Consensus 81 ~--------~---------~~~~~~~~~i~~~l~~~~~iv~~~ 106 (184)
T d1bg6a2 81 P--------A---------IHHASIAANIASYISEGQLIILNP 106 (184)
T ss_dssp C--------G---------GGHHHHHHHHGGGCCTTCEEEESS
T ss_pred c--------h---------hHHHHHHHHhhhccCCCCEEEEeC
Confidence 1 1 123456666666644455665544
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=98.18 E-value=1e-05 Score=58.89 Aligned_cols=116 Identities=12% Similarity=0.051 Sum_probs=75.5
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCCcchhhhhhhc--cCCCCcEEEEEcCCCCcCcHHHHhcCC
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLAL--DGASERLQLFKANLLEEGSFDSIVDGC 82 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~~~ 82 (281)
.+.+||.|.|+ |.+|+.++..|+.+| .++.+++++++........... ...........+|. +.++++
T Consensus 18 ~~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~-------~~~~~a 89 (160)
T d1i0za1 18 VPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDY-------SVTANS 89 (160)
T ss_dssp CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSG-------GGGTTC
T ss_pred CCCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccch-------hhcccc
Confidence 34679999996 999999999999998 4899999876443221111111 01011121112222 236689
Q ss_pred cEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEec
Q 023515 83 DGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131 (281)
Q Consensus 83 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S 131 (281)
|+||..||........ ..+.++.|..-.+.+.....+.....-++.+|
T Consensus 90 diVVitAg~~~~~g~t-R~~l~~~N~~i~~~i~~~i~~~~p~aiiivvt 137 (160)
T d1i0za1 90 KIVVVTAGVRQQEGES-RLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVS 137 (160)
T ss_dssp SEEEECCSCCCCTTCC-GGGGHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred cEEEEecCCccccCcc-hHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 9999999975544333 34888899999999999999973333344444
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=98.17 E-value=4.2e-06 Score=59.77 Aligned_cols=113 Identities=15% Similarity=0.180 Sum_probs=73.8
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCCcchhhhhhhc-cCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLAL-DGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
|||.|.|+ |.+|+.++..|+.++ .++.++++++++.......... ...........+|. +.++++|+||
T Consensus 1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~-------~~~~~adivv 72 (140)
T d1a5za1 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDY-------ADLKGSDVVI 72 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCG-------GGGTTCSEEE
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcH-------HHhcCCCEEE
Confidence 57999996 999999999999887 6899999876443221111111 01112333333322 2367899999
Q ss_pred EecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
-+||......... .+.+..|..-.+.+.+...++ ..+.++.+-|
T Consensus 73 itag~~~~~g~~r-~dl~~~N~~I~~~i~~~i~~~-~p~aivivvt 116 (140)
T d1a5za1 73 VAAGVPQKPGETR-LQLLGRNARVMKEIARNVSKY-APDSIVIVVT 116 (140)
T ss_dssp ECCCCCCCSSCCH-HHHHHHHHHHHHHHHHHHHHH-CTTCEEEECS
T ss_pred EecccccCCCcch-hhhhccccchHHHHHHHHHhc-CCCcEEEEeC
Confidence 9998755444333 377888999999999999998 4344444433
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=98.15 E-value=7.3e-06 Score=58.84 Aligned_cols=114 Identities=11% Similarity=0.075 Sum_probs=72.0
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCCcchhhhhhh--ccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLA--LDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
|||.|+|+ |.+|..++..|+.+| .+++++++++.+......... ............+|. +.++++|+|
T Consensus 2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~-------~~l~~adiV 73 (146)
T d1hyha1 2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-------AALADADVV 73 (146)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-------GGGTTCSEE
T ss_pred CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCH-------HHhccccEE
Confidence 68999995 999999999999887 589999887654322111111 111112233333332 235789999
Q ss_pred EEecccCCCCCCC---ccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 86 CHTASPFYHDAKD---PQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 86 ih~a~~~~~~~~~---~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
|-.||......++ ...+.++.|..-...+.+...++ ..+.++.+-|
T Consensus 74 VitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~-~p~aivivvt 122 (146)
T d1hyha1 74 ISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKES-GFHGVLVVIS 122 (146)
T ss_dssp EECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHT-TCCSEEEECS
T ss_pred EEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEec
Confidence 9999864422211 22367788999999999999998 4444444443
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.14 E-value=4.9e-07 Score=68.58 Aligned_cols=43 Identities=16% Similarity=0.185 Sum_probs=37.5
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhh
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHL 52 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~ 52 (281)
|||.|+||+|.+|++|++.|++.||+|++.+|++++...+.+.
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~ 43 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAE 43 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 5799999999999999999999999999999998766665444
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.13 E-value=4e-06 Score=61.05 Aligned_cols=116 Identities=13% Similarity=0.078 Sum_probs=74.0
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCCcchhhhhhhc--cCCCCcEEEEEcCCCCcCcHHHHhcCC
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLAL--DGASERLQLFKANLLEEGSFDSIVDGC 82 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~~~ 82 (281)
++..||.|+|+ |.+|..++..|+.+| .++.+++++++.+......... ............|. +.++++
T Consensus 17 ~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~-------~~~~~a 88 (159)
T d2ldxa1 17 LSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDY-------NVSANS 88 (159)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSG-------GGGTTE
T ss_pred CCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccch-------hhhccc
Confidence 45678999996 999999999999987 5899998876543221111111 11111222222222 234689
Q ss_pred cEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEec
Q 023515 83 DGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131 (281)
Q Consensus 83 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S 131 (281)
|+||..||......... .+.++.|..-.+.+.....++.....++.+|
T Consensus 89 divvitag~~~~~~~~R-~dll~~N~~i~~~i~~~i~~~~p~~ivivvt 136 (159)
T d2ldxa1 89 KLVIITAGARMVSGQTR-LDLLQRNVAIMKAIVPGVIQNSPDCKIIVVT 136 (159)
T ss_dssp EEEEECCSCCCCTTTCS-SCTTHHHHHHHHHHTTTHHHHSTTCEEEECS
T ss_pred cEEEEecccccCCCCCH-HHHHHHHHHHHHHHHHHHhccCCCeEEEEeC
Confidence 99999998755443333 3778899999999998888873333444444
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=98.07 E-value=1.9e-05 Score=56.33 Aligned_cols=113 Identities=16% Similarity=0.122 Sum_probs=73.1
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCCcchhhhhhhcc-CCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALD-GASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
.||.|+|+ |.+|++++..|+.+| .++.++++++..........+.. ........... ++.+ .++++|+||
T Consensus 2 ~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~-----~~~~-~~~daDvVV 74 (143)
T d1llda1 2 TKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS-----DDPE-ICRDADMVV 74 (143)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEE-----SCGG-GGTTCSEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecC-----CCHH-HhhCCcEEE
Confidence 37999996 999999999999998 58999998765432211111110 00112222211 2223 466899999
Q ss_pred EecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEec
Q 023515 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131 (281)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S 131 (281)
-.||......... .+.++.|..-.+.+...+.++ ..+.++.+-
T Consensus 75 itaG~~~~~g~~R-~dl~~~N~~i~~~i~~~i~~~-~p~ai~ivv 117 (143)
T d1llda1 75 ITAGPRQKPGQSR-LELVGATVNILKAIMPNLVKV-APNAIYMLI 117 (143)
T ss_dssp ECCCCCCCTTCCH-HHHHHHHHHHHHHHHHHHHHH-CTTSEEEEC
T ss_pred EecccccCCCCch-hhhhhhhHHHHHHHHHHHHhh-CCCeEEEEe
Confidence 9999765444433 378899999999999999988 444344333
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.07 E-value=3.7e-06 Score=60.17 Aligned_cols=114 Identities=12% Similarity=0.059 Sum_probs=73.0
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCCCcchhhhhhh--ccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLA--LDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
|||.|.|+ |.+|++++..|+.+| .++.+++++++.........+ ............ ..+. +.++++|+|
T Consensus 1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~-----~~d~-~~~~~adiV 73 (142)
T d1ojua1 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG-----GADY-SLLKGSEII 73 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEE-----ESCG-GGGTTCSEE
T ss_pred CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCcccc-----CCCH-HHhccccEE
Confidence 58999996 999999999999887 589999887644322111111 001011112211 1112 356789999
Q ss_pred EEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
|-.|+........ ..+.++.|..-...+.+.+.++ ..+.++.+.|
T Consensus 74 vitag~~~~~g~~-r~~l~~~n~~i~~~i~~~i~~~-~p~aivivvt 118 (142)
T d1ojua1 74 VVTAGLARKPGMT-RLDLAHKNAGIIKDIAKKIVEN-APESKILVVT 118 (142)
T ss_dssp EECCCCCCCSSCC-HHHHHHHHHHHHHHHHHHHHTT-STTCEEEECS
T ss_pred EEeccccCCCCCc-hHHHHHHhhHHHHHHHHHHHhh-CCCcEEEEec
Confidence 9999865544343 3488888999999999999998 4444444444
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=98.06 E-value=3.3e-06 Score=62.65 Aligned_cols=116 Identities=15% Similarity=0.020 Sum_probs=71.9
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCC-----C--EEEEEEcCCCCcchhhhh---hhccCCCCcEEEEEcCCCCcCcHHHH
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRG-----Y--TVKASVRDPNDPKKTRHL---LALDGASERLQLFKANLLEEGSFDSI 78 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g-----~--~V~~~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~D~~~~~~~~~~ 78 (281)
..+|.||||+|.||++++-.|++.+ . ++..++.... ...+..+ ...-.. .....+. -.....+.
T Consensus 24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~-~~~l~g~~mdl~d~a~-~~~~~~~----~~~~~~~~ 97 (175)
T d7mdha1 24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERS-FQALEGVAMELEDSLY-PLLREVS----IGIDPYEV 97 (175)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGG-HHHHHHHHHHHHTTTC-TTEEEEE----EESCHHHH
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccc-cchhcchhhhhccccc-ccccCcc----ccccchhh
Confidence 3479999999999999999998742 1 3444444332 1222211 111110 1111111 11235677
Q ss_pred hcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCC-ccEEEEec
Q 023515 79 VDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTS 131 (281)
Q Consensus 79 ~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~S 131 (281)
++++|+||-.||........ ..+.++.|..-.+.+.+++.++.+ .-+++.+|
T Consensus 98 ~~~aDvVvi~ag~~rkpg~t-R~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~ 150 (175)
T d7mdha1 98 FEDVDWALLIGAKPRGPGME-RAALLDINGQIFADQGKALNAVASKNVKVLVVG 150 (175)
T ss_dssp TTTCSEEEECCCCCCCTTCC-HHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred ccCCceEEEeeccCCCCCCc-HHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEec
Confidence 88999999999876554443 348999999999999999999633 23455554
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=98.01 E-value=4.3e-06 Score=62.66 Aligned_cols=84 Identities=14% Similarity=0.104 Sum_probs=62.3
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
.++++|+|.|+ |+.|++++..|.+.|. +++++.|+.++.+++..+.+.............++.+.+.+...+..+|+|
T Consensus 16 l~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dii 94 (182)
T d1vi2a1 16 IKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADIL 94 (182)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEE
T ss_pred cCCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhccccee
Confidence 46899999996 8899999999999985 799999988776654443221100112345567888878888888899999
Q ss_pred EEeccc
Q 023515 86 CHTASP 91 (281)
Q Consensus 86 ih~a~~ 91 (281)
||+...
T Consensus 95 IN~Tp~ 100 (182)
T d1vi2a1 95 TNGTKV 100 (182)
T ss_dssp EECSST
T ss_pred ccccCC
Confidence 999743
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=97.99 E-value=5.7e-06 Score=59.24 Aligned_cols=114 Identities=13% Similarity=0.105 Sum_probs=68.6
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhhhhcc--CCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALD--GASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+||.|.|+ |.+|.+++-.|+.++ .++.+++..++............ .......+. ...+.+ .+++.|+||
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~-----~~~d~~-~~~~advvv 74 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVT-----GTNNYA-DTANSDVIV 74 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEE-----EESCGG-GGTTCSEEE
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEE-----ecCcHH-HhcCCCEEE
Confidence 68999996 999999999998887 58999988776433321111100 000111111 112223 356899999
Q ss_pred EecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
-+||........ ..+.++.|..-.+.+.....++ ..+.++.+.|
T Consensus 75 itag~~~~~~~~-r~dl~~~N~~i~~~i~~~i~k~-~p~aivivvt 118 (142)
T d1uxja1 75 VTSGAPRKPGMS-REDLIKVNADITRACISQAAPL-SPNAVIIMVN 118 (142)
T ss_dssp ECCSCC----------CHHHHHHHHHHHHHHHGGG-CTTCEEEECS
T ss_pred EeeeccCCcCcc-hhHHHhHHHHHHHHHHHHHhcc-CCCceEEEeC
Confidence 999875543333 2377889999999999999997 4444444433
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.89 E-value=5.3e-06 Score=60.34 Aligned_cols=116 Identities=19% Similarity=0.041 Sum_probs=69.8
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCC-----C--EEEEEEcCCCCcchhhhh---hhccCCCCcEEEEEcCCCCcCcHHHH
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRG-----Y--TVKASVRDPNDPKKTRHL---LALDGASERLQLFKANLLEEGSFDSI 78 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g-----~--~V~~~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~D~~~~~~~~~~ 78 (281)
.+||.|+||+|.+|++++-.|+..+ . +++.++..+. ....+.+ ...... .....+.. .....+.
T Consensus 3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~-~~~~~~l~~~~~~~~~-~~~~~~~~----~~~~~~~ 76 (154)
T d5mdha1 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPM-MGVLDGVLMELQDCAL-PLLKDVIA----TDKEEIA 76 (154)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGG-HHHHHHHHHHHHHTCC-TTEEEEEE----ESCHHHH
T ss_pred ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccc-hhhhhhhhhhhccccc-cccccccc----Ccccccc
Confidence 4589999999999999999998653 1 3444443322 1121221 111110 11111111 1234567
Q ss_pred hcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCcc-EEEEec
Q 023515 79 VDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIK-RVVLTS 131 (281)
Q Consensus 79 ~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~v~~S 131 (281)
++++|+||-.||......+.. .+.++.|..-.+.+.....++.+.. .++.+|
T Consensus 77 ~~~~dvVVitag~~~~~g~sr-~dll~~N~~i~k~~~~~i~k~a~~~~~iivvs 129 (154)
T d5mdha1 77 FKDLDVAILVGSMPRRDGMER-KDLLKANVKIFKCQGAALDKYAKKSVKVIVVG 129 (154)
T ss_dssp TTTCSEEEECCSCCCCTTCCT-TTTHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred cCCceEEEEecccCCCCCCch-hHHHHHhHHHHHHHHHHHHhhCCCceEEEEec
Confidence 889999999998755543333 3778999999999999988752333 334444
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=97.87 E-value=2.3e-05 Score=60.42 Aligned_cols=73 Identities=12% Similarity=0.049 Sum_probs=51.4
Q ss_pred ccCCCeEEEeCC----------------chHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCC
Q 023515 6 AAAGKVVCVTGA----------------SGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69 (281)
Q Consensus 6 ~~~~~~ilItGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 69 (281)
.+++++||||+| ||..|.+|++++..+|++|+++.-...... +..+..+..
T Consensus 3 dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~~~-----------p~~~~~~~~-- 69 (223)
T d1u7za_ 3 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLPT-----------PPFVKRVDV-- 69 (223)
T ss_dssp TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCCC-----------CTTEEEEEC--
T ss_pred ccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhcccccCc-----------cccccccee--
Confidence 467999999975 689999999999999999999876543211 123444332
Q ss_pred CCcCc----HHHHhcCCcEeEEeccc
Q 023515 70 LEEGS----FDSIVDGCDGVCHTASP 91 (281)
Q Consensus 70 ~~~~~----~~~~~~~~d~Vih~a~~ 91 (281)
...++ +.+.+++.|++|++||+
T Consensus 70 ~t~~~m~~~~~~~~~~~D~~i~aAAv 95 (223)
T d1u7za_ 70 MTALEMEAAVNASVQQQNIFIGCAAV 95 (223)
T ss_dssp CSHHHHHHHHHHHGGGCSEEEECCBC
T ss_pred hhhHHHHHHHHhhhccceeEeeeech
Confidence 23333 33344689999999986
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=97.87 E-value=5.8e-06 Score=52.20 Aligned_cols=44 Identities=32% Similarity=0.324 Sum_probs=38.3
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhh
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRH 51 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~ 51 (281)
++.+|+|+||+|.+|...+..+...|++|+++.+++++.+.++.
T Consensus 31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~~ 74 (77)
T d1o8ca2 31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKS 74 (77)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHH
T ss_pred CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHHH
Confidence 46789999999999999999988999999999998877665443
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.86 E-value=2.6e-05 Score=56.09 Aligned_cols=116 Identities=16% Similarity=0.055 Sum_probs=72.6
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhhhhcc--CCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALD--GASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
.+||.|.|+ |.+|++++..|..++ .++.++++.++.........+.. ....+......+ ..+.++++|+|
T Consensus 3 ~~KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~------~~~~~~~advv 75 (150)
T d1t2da1 3 KAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSN------TYDDLAGADVV 75 (150)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEEC------CGGGGTTCSEE
T ss_pred CCeEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecc------cccccCCCcEE
Confidence 468999995 999999998888877 68899998775443321111110 000111221111 12345689999
Q ss_pred EEecccCCCCC----CCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 86 CHTASPFYHDA----KDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 86 ih~a~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
|-+|+...... .......++.|..-.+.+.+.++++ ..+.++.+-|
T Consensus 76 vitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~-~p~aivivvt 125 (150)
T d1t2da1 76 IVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN-CPNAFIIVVT 125 (150)
T ss_dssp EECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECS
T ss_pred EEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhc-CCCeEEEEec
Confidence 99998633221 1123477899999999999999998 4444444433
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=97.86 E-value=6.9e-06 Score=59.98 Aligned_cols=72 Identities=21% Similarity=0.187 Sum_probs=55.7
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcE
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~ 84 (281)
.+++++|+|.|+ |-+|+.+++.|..+|. ++++..|..+++..+.... +... .+.+++.+.+.+.|+
T Consensus 21 ~l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~-------~~~~-----~~~~~~~~~l~~~Di 87 (159)
T d1gpja2 21 SLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL-------GGEA-----VRFDELVDHLARSDV 87 (159)
T ss_dssp CCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH-------TCEE-----CCGGGHHHHHHTCSE
T ss_pred CcccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhh-------hccc-----ccchhHHHHhccCCE
Confidence 467899999997 9999999999999996 6889998876665544432 1121 234677888889999
Q ss_pred eEEecc
Q 023515 85 VCHTAS 90 (281)
Q Consensus 85 Vih~a~ 90 (281)
||.+.+
T Consensus 88 vi~ats 93 (159)
T d1gpja2 88 VVSATA 93 (159)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 999875
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=97.85 E-value=2.6e-06 Score=64.26 Aligned_cols=81 Identities=12% Similarity=0.042 Sum_probs=54.1
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
|.|+||.|.|| |..|.+++..|.+.|++|++.+|+++..+.+..........+++.+ .-++.-..+++++++++|+||
T Consensus 5 ~~m~KI~ViGa-G~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l-~~~i~~t~~l~~a~~~ad~ii 82 (189)
T d1n1ea2 5 LYLNKAVVFGS-GAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQL-ASNITFTSDVEKAYNGAEIIL 82 (189)
T ss_dssp CCEEEEEEECC-SHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBC-CTTEEEESCHHHHHTTCSCEE
T ss_pred ceeceEEEECC-CHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhccccccccccccc-ccccccchhhhhccCCCCEEE
Confidence 34678999995 9999999999999999999999987655544332221110111111 122322356888899999998
Q ss_pred Eec
Q 023515 87 HTA 89 (281)
Q Consensus 87 h~a 89 (281)
-+.
T Consensus 83 iav 85 (189)
T d1n1ea2 83 FVI 85 (189)
T ss_dssp ECS
T ss_pred EcC
Confidence 754
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.84 E-value=8.3e-06 Score=60.51 Aligned_cols=74 Identities=22% Similarity=0.187 Sum_probs=51.4
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----CC
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-----GC 82 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-----~~ 82 (281)
++.+|||+||+|.+|...++.+...|.+|+++++++++.+.+.++ ++..+ .|.++.+..+.+.+ ++
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~--------Ga~~v-i~~~~~~~~~~i~~~t~~~g~ 98 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQN--------GAHEV-FNHREVNYIDKIKKYVGEKGI 98 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT--------TCSEE-EETTSTTHHHHHHHHHCTTCE
T ss_pred CCCEEEEEeccccccccccccccccCccccccccccccccccccc--------Ccccc-cccccccHHHHhhhhhccCCc
Confidence 478999999999999999999999999999999876444333222 11111 25555443333322 58
Q ss_pred cEeEEecc
Q 023515 83 DGVCHTAS 90 (281)
Q Consensus 83 d~Vih~a~ 90 (281)
|+||.+.+
T Consensus 99 d~v~d~~g 106 (174)
T d1yb5a2 99 DIIIEMLA 106 (174)
T ss_dssp EEEEESCH
T ss_pred eEEeeccc
Confidence 99998865
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=97.84 E-value=9.6e-06 Score=60.00 Aligned_cols=74 Identities=22% Similarity=0.165 Sum_probs=51.0
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 87 (281)
++.+|+|+||+|.+|...++.+...|.+|+++++++++.+.++++ ++..+ .|..+........+++|+||.
T Consensus 27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~l--------Ga~~~-i~~~~~~~~~~~~~g~D~v~d 97 (171)
T d1iz0a2 27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLAL--------GAEEA-ATYAEVPERAKAWGGLDLVLE 97 (171)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHT--------TCSEE-EEGGGHHHHHHHTTSEEEEEE
T ss_pred CCCEEEEEeccccchhhhhhhhccccccccccccccccccccccc--------cccee-eehhhhhhhhhcccccccccc
Confidence 578999999999999999999999999999999887655554432 11111 133221111222347999999
Q ss_pred ecc
Q 023515 88 TAS 90 (281)
Q Consensus 88 ~a~ 90 (281)
+.|
T Consensus 98 ~~G 100 (171)
T d1iz0a2 98 VRG 100 (171)
T ss_dssp CSC
T ss_pred ccc
Confidence 765
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=97.83 E-value=1.2e-05 Score=60.16 Aligned_cols=74 Identities=18% Similarity=0.227 Sum_probs=52.6
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHh-----cCC
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV-----DGC 82 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-----~~~ 82 (281)
++.+|||+||+|.+|...++-....|.+|+++++++++.+.++..- ....+ |..+.+..+.+. +++
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~G------a~~vi---~~~~~~~~~~~~~~~~~~Gv 99 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIG------FDAAF---NYKTVNSLEEALKKASPDGY 99 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTT------CSEEE---ETTSCSCHHHHHHHHCTTCE
T ss_pred CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhh------hhhhc---ccccccHHHHHHHHhhcCCC
Confidence 4789999999999999999999999999999998876554443321 11222 334444344333 269
Q ss_pred cEeEEecc
Q 023515 83 DGVCHTAS 90 (281)
Q Consensus 83 d~Vih~a~ 90 (281)
|+||++.|
T Consensus 100 d~v~D~vG 107 (182)
T d1v3va2 100 DCYFDNVG 107 (182)
T ss_dssp EEEEESSC
T ss_pred ceeEEecC
Confidence 99999875
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.81 E-value=9.2e-06 Score=58.23 Aligned_cols=36 Identities=14% Similarity=0.047 Sum_probs=29.0
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCC----CEEEEEEcCCC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRG----YTVKASVRDPN 44 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g----~~V~~~~r~~~ 44 (281)
||+|.|.||||++|+.+++.|+++. .+++.+.++..
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s 40 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQL 40 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSST
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccc
Confidence 5689999999999999999988763 46666665543
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=97.78 E-value=2.9e-05 Score=56.79 Aligned_cols=38 Identities=21% Similarity=0.280 Sum_probs=34.5
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcch
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKK 48 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~ 48 (281)
|||+|.|+ |.+|..++..|.+.|++|++++|++.+...
T Consensus 1 MkI~IiGa-G~iG~~~a~~L~~~G~~V~~~~r~~~~~~~ 38 (167)
T d1ks9a2 1 MKITVLGC-GALGQLWLTALCKQGHEVQGWLRVPQPYCS 38 (167)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCSEEE
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCCceEEEEcCHHHhhh
Confidence 58999997 999999999999999999999998876554
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=97.72 E-value=3.2e-05 Score=55.91 Aligned_cols=74 Identities=18% Similarity=0.251 Sum_probs=57.0
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchh-hhhhhccCCCCcEEEEEcCCCCcCcHHHH-hcCCcEeEE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKT-RHLLALDGASERLQLFKANLLEEGSFDSI-VDGCDGVCH 87 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~Vih 87 (281)
.+|+|.|. |-+|+.++++|.++|++|++++.++++.... .... ..++.++.||.++++.++++ ++++|.||-
T Consensus 4 nHiII~G~-g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~-----~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~ 77 (153)
T d1id1a_ 4 DHFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL-----GDNADVIPGDSNDSSVLKKAGIDRCRAILA 77 (153)
T ss_dssp SCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH-----CTTCEEEESCTTSHHHHHHHTTTTCSEEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhh-----cCCcEEEEccCcchHHHHHhccccCCEEEE
Confidence 46999996 8999999999999999999999876543221 1111 13689999999999888775 467899886
Q ss_pred ec
Q 023515 88 TA 89 (281)
Q Consensus 88 ~a 89 (281)
+.
T Consensus 78 ~~ 79 (153)
T d1id1a_ 78 LS 79 (153)
T ss_dssp CS
T ss_pred cc
Confidence 64
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=97.71 E-value=1.4e-05 Score=57.92 Aligned_cols=38 Identities=16% Similarity=0.323 Sum_probs=34.8
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN 44 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (281)
..+++|.|.||.|.+|+.+++.|.+.||+|.+.+|+..
T Consensus 7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~ 44 (152)
T d2pv7a2 7 SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW 44 (152)
T ss_dssp TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred CCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccc
Confidence 45789999999999999999999999999999998764
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=97.70 E-value=1.5e-05 Score=59.38 Aligned_cols=74 Identities=11% Similarity=0.065 Sum_probs=54.0
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHh---c--CC
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV---D--GC 82 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~---~--~~ 82 (281)
.+.+|+|+||+|.+|..+++-+...|.+|+++++++++.+.+.++ +...+ .|.++.+..+++. + ++
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~l--------Ga~~v-i~~~~~d~~~~v~~~t~g~g~ 98 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKA--------GAWQV-INYREEDLVERLKEITGGKKV 98 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH--------TCSEE-EETTTSCHHHHHHHHTTTCCE
T ss_pred CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhc--------CCeEE-EECCCCCHHHHHHHHhCCCCe
Confidence 478999999999999999999999999999999998776665443 12221 3556544333332 2 57
Q ss_pred cEeEEecc
Q 023515 83 DGVCHTAS 90 (281)
Q Consensus 83 d~Vih~a~ 90 (281)
|+|+.+++
T Consensus 99 d~v~d~~g 106 (179)
T d1qora2 99 RVVYDSVG 106 (179)
T ss_dssp EEEEECSC
T ss_pred EEEEeCcc
Confidence 99999875
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=97.70 E-value=1.5e-05 Score=58.48 Aligned_cols=37 Identities=24% Similarity=0.237 Sum_probs=32.1
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcc
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPK 47 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~ 47 (281)
|||.|.|. |.+|+.+++.|.+.|++|++.+|+++..+
T Consensus 1 MkI~iIG~-G~mG~~lA~~l~~~g~~V~~~d~~~~~~~ 37 (165)
T d2f1ka2 1 MKIGVVGL-GLIGASLAGDLRRRGHYLIGVSRQQSTCE 37 (165)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred CEEEEEee-cHHHHHHHHHHHHCCCEEEEEECCchHHH
Confidence 57999985 99999999999999999999999865433
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.69 E-value=2.1e-05 Score=59.76 Aligned_cols=81 Identities=14% Similarity=0.020 Sum_probs=49.7
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEE-----EEEcCCCCcCcHHHHhcCCcE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQ-----LFKANLLEEGSFDSIVDGCDG 84 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-----~~~~D~~~~~~~~~~~~~~d~ 84 (281)
|||.|.| .|++|..++..|+++|++|++++.++...+.+..-.........-+ .....+.-..++.++++++|+
T Consensus 1 MkI~ViG-lG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~ 79 (202)
T d1mv8a2 1 MRISIFG-LGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDV 79 (202)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSE
T ss_pred CEEEEEC-CCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCE
Confidence 5799997 6999999999999999999999987543333221100000000000 000111223456777888999
Q ss_pred eEEeccc
Q 023515 85 VCHTASP 91 (281)
Q Consensus 85 Vih~a~~ 91 (281)
++-+..-
T Consensus 80 i~i~VpT 86 (202)
T d1mv8a2 80 SFICVGT 86 (202)
T ss_dssp EEECCCC
T ss_pred EEEecCc
Confidence 9988754
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.69 E-value=2.5e-05 Score=57.84 Aligned_cols=98 Identities=22% Similarity=0.176 Sum_probs=62.2
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCc-CcHHHHh--cCCcEe
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEE-GSFDSIV--DGCDGV 85 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~--~~~d~V 85 (281)
+.+|||+||+|.+|...++-+...|.+|+++++++++.+....+- ....+ |-.+. ++..... +++|+|
T Consensus 32 g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lG------a~~vi---~~~~~~~~~~~~~~~~gvD~v 102 (176)
T d1xa0a2 32 RGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLG------AKEVL---AREDVMAERIRPLDKQRWAAA 102 (176)
T ss_dssp GCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTT------CSEEE---ECC---------CCSCCEEEE
T ss_pred CCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcc------cceee---ecchhHHHHHHHhhccCcCEE
Confidence 678999999999999999999999999999999988876655431 11111 22211 1111122 278999
Q ss_pred EEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecccee
Q 023515 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAA 135 (281)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~ 135 (281)
|.+.+- ..+ ...++.++.. .+++.++....
T Consensus 103 id~vgg------~~~-----------~~~l~~l~~~---Griv~~G~~~g 132 (176)
T d1xa0a2 103 VDPVGG------RTL-----------ATVLSRMRYG---GAVAVSGLTGG 132 (176)
T ss_dssp EECSTT------TTH-----------HHHHHTEEEE---EEEEECSCCSS
T ss_pred EEcCCc------hhH-----------HHHHHHhCCC---ceEEEeecccC
Confidence 998762 112 2234444443 68888887543
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=97.69 E-value=1.4e-05 Score=58.84 Aligned_cols=44 Identities=34% Similarity=0.438 Sum_probs=38.8
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhh
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHL 52 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~ 52 (281)
+.+|||+||+|.+|...++.....|.+|+++++++++.+.+..+
T Consensus 24 ~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~l 67 (167)
T d1tt7a2 24 KGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQL 67 (167)
T ss_dssp GCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHH
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhh
Confidence 45799999999999999988888899999999998887776554
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.64 E-value=1.9e-05 Score=58.95 Aligned_cols=74 Identities=16% Similarity=0.170 Sum_probs=51.5
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHh-----cCC
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV-----DGC 82 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-----~~~ 82 (281)
++.+|||+||+|.+|...++.+...|.+|+++++++++.+.+.+. ++..+ .|..+.+..+.+. +++
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~--------Ga~~v-i~~~~~~~~~~v~~~t~~~g~ 95 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRL--------GVEYV-GDSRSVDFADEILELTDGYGV 95 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTT--------CCSEE-EETTCSTHHHHHHHHTTTCCE
T ss_pred CCCEEEEECCCCCcccccchhhccccccceeeecccccccccccc--------ccccc-ccCCccCHHHHHHHHhCCCCE
Confidence 368999999999999999999988899999999876554443322 11221 2444443333332 268
Q ss_pred cEeEEecc
Q 023515 83 DGVCHTAS 90 (281)
Q Consensus 83 d~Vih~a~ 90 (281)
|+||.+.+
T Consensus 96 d~v~d~~g 103 (183)
T d1pqwa_ 96 DVVLNSLA 103 (183)
T ss_dssp EEEEECCC
T ss_pred EEEEeccc
Confidence 99999875
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.63 E-value=2.5e-05 Score=57.15 Aligned_cols=65 Identities=18% Similarity=0.113 Sum_probs=49.2
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEe
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~ 88 (281)
|++|.+.| .|.+|+++++.|+++||+|.+.+|++++.+.+... . ........++++.+|+|+-+
T Consensus 1 M~kIg~IG-lG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~--------~-------~~~~~~~~e~~~~~diii~~ 64 (162)
T d3cuma2 1 MKQIAFIG-LGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAA--------G-------ASAARSARDAVQGADVVISM 64 (162)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHT--------T-------CEECSSHHHHHTSCSEEEEC
T ss_pred CCEEEEEE-EHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhh--------h-------ccccchhhhhccccCeeeec
Confidence 56899998 69999999999999999999999987655443322 1 11223467788889998876
Q ss_pred c
Q 023515 89 A 89 (281)
Q Consensus 89 a 89 (281)
.
T Consensus 65 v 65 (162)
T d3cuma2 65 L 65 (162)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=97.56 E-value=3.3e-05 Score=57.28 Aligned_cols=44 Identities=34% Similarity=0.356 Sum_probs=38.3
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhh
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHL 52 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~ 52 (281)
+.+|||+||+|.+|...++.....|.+|+++++++++.+.+..+
T Consensus 32 ~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~l 75 (177)
T d1o89a2 32 DGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSL 75 (177)
T ss_dssp GCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHH
T ss_pred CCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhh
Confidence 34899999999999999999999999999999998877665544
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=97.54 E-value=4.2e-05 Score=56.44 Aligned_cols=73 Identities=21% Similarity=0.236 Sum_probs=44.6
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 87 (281)
|+||.|.||||++|..+++.|.++. .++..+..+......+....... .. ..++ ...+.+.+.+++|+|+-
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~-----~~--~~~~-~~~~~~~~~~~~dvvf~ 72 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPST-----LE--NSIL-SEFDPEKVSKNCDVLFT 72 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGG-----CC--CCBC-BCCCHHHHHHHCSEEEE
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchh-----hc--cccc-cccCHhHhccccceEEE
Confidence 5689999999999999999999876 57777654433333332221110 00 0112 12334455567999986
Q ss_pred ec
Q 023515 88 TA 89 (281)
Q Consensus 88 ~a 89 (281)
+.
T Consensus 73 a~ 74 (176)
T d1vkna1 73 AL 74 (176)
T ss_dssp CC
T ss_pred cc
Confidence 65
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.53 E-value=1.1e-05 Score=60.78 Aligned_cols=112 Identities=16% Similarity=0.170 Sum_probs=66.9
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhc-------cCCCC-------cEEEEEcCCCCc
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLAL-------DGASE-------RLQLFKANLLEE 72 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-------~~~~~-------~~~~~~~D~~~~ 72 (281)
|+-++|.|.|| |.+|+.++..++..|++|++++++++..+...+.... ..... ........+.-.
T Consensus 2 ~~IkkvaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~ 80 (192)
T d1f0ya2 2 IIVKHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS 80 (192)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE
T ss_pred ceeEEEEEECc-CHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhcccc
Confidence 34689999997 9999999999999999999999987543332211100 00000 000011122233
Q ss_pred CcHHHHhcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecccee
Q 023515 73 GSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAA 135 (281)
Q Consensus 73 ~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~ 135 (281)
.++.++++++|.||-++. + |+.--+.+++...+..+.. .|+.|+++.
T Consensus 81 ~d~~~a~~~ad~ViEav~-------E--------~l~~K~~v~~~l~~~~~~~-~ilasnTS~ 127 (192)
T d1f0ya2 81 TDAASVVHSTDLVVEAIV-------E--------NLKVKNELFKRLDKFAAEH-TIFASNTSS 127 (192)
T ss_dssp SCHHHHTTSCSEEEECCC-------S--------CHHHHHHHHHHHTTTSCTT-CEEEECCSS
T ss_pred chhHhhhcccceehhhcc-------c--------chhHHHHHHHHHhhhcccC-ceeeccCcc
Confidence 456778889999998752 1 2334456666666653433 444554444
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.52 E-value=0.00018 Score=47.09 Aligned_cols=73 Identities=22% Similarity=0.245 Sum_probs=50.9
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
.+++|+|+|.|. |-.|.++++.|.++|++|++.+.+...... ..+. ....+..+... ...+++.|.|
T Consensus 2 ~~~~K~v~ViGl-G~sG~s~a~~L~~~g~~v~~~D~~~~~~~~-~~~~------~~~~~~~~~~~-----~~~~~~~d~v 68 (93)
T d2jfga1 2 DYQGKNVVIIGL-GLTGLSCVDFFLARGVTPRVMDTRMTPPGL-DKLP------EAVERHTGSLN-----DEWLMAADLI 68 (93)
T ss_dssp CCTTCCEEEECC-SHHHHHHHHHHHHTTCCCEEEESSSSCTTG-GGSC------TTSCEEESBCC-----HHHHHHCSEE
T ss_pred CcCCCEEEEEeE-CHHHHHHHHHHHHCCCEEEEeeCCcCchhH-HHHh------hccceeecccc-----hhhhccCCEE
Confidence 467999999997 788999999999999999999986643321 1111 12334444331 3345678999
Q ss_pred EEeccc
Q 023515 86 CHTASP 91 (281)
Q Consensus 86 ih~a~~ 91 (281)
|-.-|.
T Consensus 69 i~SPGi 74 (93)
T d2jfga1 69 VASPGI 74 (93)
T ss_dssp EECTTS
T ss_pred EECCCC
Confidence 987765
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.51 E-value=9.2e-05 Score=54.31 Aligned_cols=75 Identities=21% Similarity=0.163 Sum_probs=51.8
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 87 (281)
.+.+|+|.|+ |.+|...+..+...|.+|+++++++++.+...++ ++..+.-...+.+..+...++.|.++.
T Consensus 27 ~g~~vlI~Ga-G~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~l--------Ga~~~i~~~~~~~~~~~~~~~~d~vi~ 97 (168)
T d1piwa2 27 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDAMKM--------GADHYIATLEEGDWGEKYFDTFDLIVV 97 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH--------TCSEEEEGGGTSCHHHHSCSCEEEEEE
T ss_pred CCCEEEEECC-CCcchhHHHHhhhccccccccccchhHHHHhhcc--------CCcEEeeccchHHHHHhhhcccceEEE
Confidence 4789999996 9999998888878899999999988776654443 111111112233334445567899999
Q ss_pred eccc
Q 023515 88 TASP 91 (281)
Q Consensus 88 ~a~~ 91 (281)
+.+.
T Consensus 98 ~~~~ 101 (168)
T d1piwa2 98 CASS 101 (168)
T ss_dssp CCSC
T ss_pred EecC
Confidence 8764
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=97.46 E-value=2.9e-05 Score=57.75 Aligned_cols=32 Identities=28% Similarity=0.281 Sum_probs=27.6
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRG-YTVKASV 40 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~ 40 (281)
|++|.|.||||++|..|++-|.++. +++..+.
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~ 33 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALT 33 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEE
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCCceEeeE
Confidence 5689999999999999999999985 6776553
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.44 E-value=7.8e-05 Score=53.20 Aligned_cols=35 Identities=29% Similarity=0.267 Sum_probs=27.8
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCC---CEEEEEEcCC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRG---YTVKASVRDP 43 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g---~~V~~~~r~~ 43 (281)
.++|.|.||||++|+.+++.|.+++ .++..+..+.
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~ 39 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAE 39 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecc
Confidence 4689999999999999999997654 4676665443
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=97.43 E-value=0.0003 Score=47.57 Aligned_cols=67 Identities=18% Similarity=0.160 Sum_probs=53.7
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--CCcEeE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVC 86 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~Vi 86 (281)
..||.|.| +|-+|+-++....+.|++|++++.++...... ---.++.+|..|.+.+.++.+ ++|+|-
T Consensus 11 ~~kigIlG-gGQL~rMla~aA~~lG~~v~v~d~~~~~PA~~----------va~~~i~~~~~d~~~l~~~~~~~~~DviT 79 (111)
T d1kjqa2 11 ATRVMLLG-SGELGKEVAIECQRLGVEVIAVDRYADAPAMH----------VAHRSHVINMLDGDALRRVVELEKPHYIV 79 (111)
T ss_dssp CCEEEEES-CSHHHHHHHHHHHTTTCEEEEEESSTTCGGGG----------GSSEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred CCEEEEEe-CCHHHHHHHHHHHHCCCEEEEEcCCCCCchhh----------cCCeEEECCCCCHHHHHHHHHhhCCceEE
Confidence 56899999 59999999999999999999999876543220 123678899999999988775 578874
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=97.43 E-value=4.5e-05 Score=55.62 Aligned_cols=64 Identities=22% Similarity=0.301 Sum_probs=48.6
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEec
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a 89 (281)
|||.|.| .|.+|+.+++.|+++||+|++.+|++++.+.+... .... .+...++++++|+||-+.
T Consensus 1 MkIgiIG-lG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~--------~~~~-------~~~~~e~~~~~d~ii~~v 64 (161)
T d1vpda2 1 MKVGFIG-LGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAA--------GAET-------ASTAKAIAEQCDVIITML 64 (161)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT--------TCEE-------CSSHHHHHHHCSEEEECC
T ss_pred CEEEEEe-hhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHh--------hhhh-------cccHHHHHhCCCeEEEEc
Confidence 5799998 69999999999999999999999987655443322 1111 234677788899998775
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=97.35 E-value=0.0001 Score=54.14 Aligned_cols=73 Identities=21% Similarity=0.202 Sum_probs=51.4
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
.++|+|+|.|+ |+.+++++..|.+.|.+|+++.|+.++.+.+....... ..+..+ +..+ . ...++|+||
T Consensus 16 ~~~k~vlIlGa-GGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~---~~~~~~--~~~~---~--~~~~~dliI 84 (170)
T d1nyta1 16 RPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHT---GSIQAL--SMDE---L--EGHEFDLII 84 (170)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGG---SSEEEC--CSGG---G--TTCCCSEEE
T ss_pred CCCCEEEEECC-cHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhc---cccccc--cccc---c--cccccceee
Confidence 46899999996 88999999999999999999999887766655443221 123222 2211 1 124689999
Q ss_pred Eecc
Q 023515 87 HTAS 90 (281)
Q Consensus 87 h~a~ 90 (281)
|+..
T Consensus 85 N~Tp 88 (170)
T d1nyta1 85 NATS 88 (170)
T ss_dssp ECCS
T ss_pred cccc
Confidence 9864
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=97.35 E-value=0.00015 Score=51.59 Aligned_cols=33 Identities=15% Similarity=0.115 Sum_probs=26.1
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCC----CEEEEEEcC
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRG----YTVKASVRD 42 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g----~~V~~~~r~ 42 (281)
|||.|.||||++|+.+++.|+++. .++..+..+
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~ 37 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTS 37 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESS
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccc
Confidence 579999999999999999998753 455555444
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.34 E-value=0.00024 Score=52.63 Aligned_cols=77 Identities=16% Similarity=0.133 Sum_probs=49.7
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC--cchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND--PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 87 (281)
|+|.|.|+ |-.|.+++..|.++|++|++..|..++ ...+......... .......++.-..++.++++++|+||.
T Consensus 1 MkI~ViGa-G~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~ad~Ii~ 77 (180)
T d1txga2 1 MIVSILGA-GAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRL--GVKLNGVEIFWPEQLEKCLENAEVVLL 77 (180)
T ss_dssp CEEEEESC-CHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTT--TBCCCSEEEECGGGHHHHHTTCSEEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhh--cchhccccccccccHHHHHhccchhhc
Confidence 58999995 999999999999999999999885432 1111111111110 111111223334678889999999987
Q ss_pred ec
Q 023515 88 TA 89 (281)
Q Consensus 88 ~a 89 (281)
+.
T Consensus 78 av 79 (180)
T d1txga2 78 GV 79 (180)
T ss_dssp CS
T ss_pred cc
Confidence 54
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=97.34 E-value=0.00022 Score=52.99 Aligned_cols=76 Identities=18% Similarity=0.166 Sum_probs=44.9
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
.++.||.|.||||++|..+++.|.++. .++..+.-+......+......... ..+.......+...+++|+|
T Consensus 3 ~~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~Dvv 75 (183)
T d2cvoa1 3 GEEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLIT-------QDLPNLVAVKDADFSNVDAV 75 (183)
T ss_dssp SSCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTT-------SCCCCCBCGGGCCGGGCSEE
T ss_pred CCccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccc-------cccccchhhhhhhhccccee
Confidence 346689999999999999999999886 5776665433333332222111100 01112222233345689999
Q ss_pred EEec
Q 023515 86 CHTA 89 (281)
Q Consensus 86 ih~a 89 (281)
|-+.
T Consensus 76 f~al 79 (183)
T d2cvoa1 76 FCCL 79 (183)
T ss_dssp EECC
T ss_pred eecc
Confidence 8664
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.31 E-value=9.3e-05 Score=53.35 Aligned_cols=65 Identities=22% Similarity=0.137 Sum_probs=47.8
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEec
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a 89 (281)
|||.+.| +|.+|+++++.|++.|++|++.+|+.++...+.+.. ++ .-..+..++++++|+||-+.
T Consensus 1 MkIg~IG-~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~-------g~-------~~~~~~~~~~~~~dvIilav 65 (152)
T d2ahra2 1 MKIGIIG-VGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL-------AL-------PYAMSHQDLIDQVDLVILGI 65 (152)
T ss_dssp CEEEEEC-CSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH-------TC-------CBCSSHHHHHHTCSEEEECS
T ss_pred CEEEEEe-ccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhcccc-------ce-------eeechhhhhhhccceeeeec
Confidence 5789998 699999999999999999999998876554443321 11 11234677788999888653
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.24 E-value=0.00016 Score=52.05 Aligned_cols=64 Identities=23% Similarity=0.209 Sum_probs=46.2
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEec
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a 89 (281)
|||.|.| .|.+|+.+++.|+++|++|++.+|++.+....... ++ .+. +...++++.+|+||-+.
T Consensus 1 MkIgiIG-~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~--------~~-----~~~--~~~~e~~~~~diIi~~v 64 (152)
T d1i36a2 1 LRVGFIG-FGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERAR--------TV-----GVT--ETSEEDVYSCPVVISAV 64 (152)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHH--------HH-----TCE--ECCHHHHHTSSEEEECS
T ss_pred CEEEEEc-HHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhh--------cc-----ccc--ccHHHHHhhcCeEEEEe
Confidence 5789997 69999999999999999999998877654332221 11 111 23466788999999774
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.23 E-value=0.00068 Score=50.09 Aligned_cols=61 Identities=21% Similarity=0.277 Sum_probs=48.9
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+.+++|.|.| .|.||+.+++.|..-|.+|++.+|.+.+.. ..-.++++++++.+|+|+
T Consensus 40 l~gk~vgIiG-~G~IG~~va~~l~~~g~~v~~~d~~~~~~~---------------------~~~~~~l~ell~~sDiv~ 97 (181)
T d1qp8a1 40 IQGEKVAVLG-LGEIGTRVGKILAALGAQVRGFSRTPKEGP---------------------WRFTNSLEEALREARAAV 97 (181)
T ss_dssp CTTCEEEEES-CSTHHHHHHHHHHHTTCEEEEECSSCCCSS---------------------SCCBSCSHHHHTTCSEEE
T ss_pred ccCceEEEec-cccccccceeeeeccccccccccccccccc---------------------eeeeechhhhhhccchhh
Confidence 5689999999 599999999999999999999998754321 111246789999999998
Q ss_pred Eec
Q 023515 87 HTA 89 (281)
Q Consensus 87 h~a 89 (281)
.+.
T Consensus 98 ~~~ 100 (181)
T d1qp8a1 98 CAL 100 (181)
T ss_dssp ECC
T ss_pred ccc
Confidence 765
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.23 E-value=0.00029 Score=51.49 Aligned_cols=75 Identities=20% Similarity=0.154 Sum_probs=49.7
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCC--cCcHHHHh-----c
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE--EGSFDSIV-----D 80 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~-----~ 80 (281)
.+.+|+|+| +|.||...+..+...|.+|+++++++.+.+...++. ....+ ..|-.+ ..++.+.+ +
T Consensus 26 ~g~~vlV~G-~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~g------a~~~~-~~~~~~~~~~~~~~~~~~~~g~ 97 (170)
T d1e3ja2 26 LGTTVLVIG-AGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCG------ADVTL-VVDPAKEEESSIIERIRSAIGD 97 (170)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT------CSEEE-ECCTTTSCHHHHHHHHHHHSSS
T ss_pred CCCEEEEEc-ccccchhhHhhHhhhcccccccchHHHHHHHHHHcC------CcEEE-eccccccccchhhhhhhccccc
Confidence 477899998 689999999999999999999998876654433321 12222 222222 12222222 2
Q ss_pred CCcEeEEecc
Q 023515 81 GCDGVCHTAS 90 (281)
Q Consensus 81 ~~d~Vih~a~ 90 (281)
++|+||.+++
T Consensus 98 g~D~vid~~g 107 (170)
T d1e3ja2 98 LPNVTIDCSG 107 (170)
T ss_dssp CCSEEEECSC
T ss_pred CCceeeecCC
Confidence 6899999886
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=97.20 E-value=0.00059 Score=50.20 Aligned_cols=73 Identities=11% Similarity=-0.015 Sum_probs=51.1
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEe
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~ 88 (281)
..+|.+.| .|.+|+.+++.|+++||+|++.+|++++.+.+....... ..... ....+++.+++..+|.++-+
T Consensus 2 ~~nIg~IG-lG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~---~~~~~----a~~~~~~~~~~~~~~~ii~~ 73 (176)
T d2pgda2 2 QADIALIG-LAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKG---TKVLG----AHSLEEMVSKLKKPRRIILL 73 (176)
T ss_dssp CBSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTT---SSCEE----CSSHHHHHHHBCSSCEEEEC
T ss_pred CCcEEEEe-EhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhcccc---ccccc----hhhhhhhhhhhcccceEEEe
Confidence 45799999 599999999999999999999999987665543321100 01110 23445566777788988876
Q ss_pred c
Q 023515 89 A 89 (281)
Q Consensus 89 a 89 (281)
.
T Consensus 74 ~ 74 (176)
T d2pgda2 74 V 74 (176)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=97.16 E-value=0.00028 Score=51.60 Aligned_cols=73 Identities=21% Similarity=0.189 Sum_probs=52.0
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 87 (281)
.+.+|+|.|+ |.||...+..+...|.+++++++++++.+...++- ... + .|..+.+......+++|++|.
T Consensus 30 ~G~~VlI~Ga-G~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lG------ad~-~--i~~~~~~~~~~~~~~~D~vid 99 (168)
T d1uufa2 30 PGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALG------ADE-V--VNSRNADEMAAHLKSFDFILN 99 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHT------CSE-E--EETTCHHHHHTTTTCEEEEEE
T ss_pred CCCEEEEecc-chHHHHHHHHhhcccccchhhccchhHHHHHhccC------CcE-E--EECchhhHHHHhcCCCceeee
Confidence 4789999986 88999999888889999999998776554433331 111 1 244454445555568999999
Q ss_pred ecc
Q 023515 88 TAS 90 (281)
Q Consensus 88 ~a~ 90 (281)
+.+
T Consensus 100 ~~g 102 (168)
T d1uufa2 100 TVA 102 (168)
T ss_dssp CCS
T ss_pred eee
Confidence 876
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=97.15 E-value=0.00016 Score=50.48 Aligned_cols=69 Identities=19% Similarity=0.170 Sum_probs=52.2
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHH-hcCCcEeEEe
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI-VDGCDGVCHT 88 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~Vih~ 88 (281)
|.|+|.|. |.+|+.+++.| ++++|.+++.++...+.+.. .++.++.||.++++.|.++ +++++.+|-+
T Consensus 1 kHivI~G~-g~~g~~l~~~L--~~~~i~vi~~d~~~~~~~~~--------~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~ 69 (129)
T d2fy8a1 1 RHVVICGW-SESTLECLREL--RGSEVFVLAEDENVRKKVLR--------SGANFVHGDPTRVSDLEKANVRGARAVIVN 69 (129)
T ss_dssp CCEEEESC-CHHHHHHHHTS--CGGGEEEEESCTTHHHHHHH--------TTCEEEESCTTSHHHHHHTTCTTCSEEEEC
T ss_pred CEEEEECC-CHHHHHHHHHH--cCCCCEEEEcchHHHHHHHh--------cCccccccccCCHHHHHHhhhhcCcEEEEe
Confidence 46899985 88999999999 56778888877665443222 3688999999998888775 4578888854
Q ss_pred c
Q 023515 89 A 89 (281)
Q Consensus 89 a 89 (281)
.
T Consensus 70 ~ 70 (129)
T d2fy8a1 70 L 70 (129)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.11 E-value=0.002 Score=47.74 Aligned_cols=64 Identities=22% Similarity=0.150 Sum_probs=48.5
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+.+++|.|.| .|.||+.+++.|..-|.+|+..++....... .. ...+.++++++.+|+|+
T Consensus 42 l~~~~vgiiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~------------~~-------~~~~~l~ell~~sDii~ 101 (188)
T d1sc6a1 42 ARGKKLGIIG-YGHIGTQLGILAESLGMYVYFYDIENKLPLG------------NA-------TQVQHLSDLLNMSDVVS 101 (188)
T ss_dssp STTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCCCCT------------TC-------EECSCHHHHHHHCSEEE
T ss_pred ccceEEEEee-cccchhhhhhhcccccceEeeccccccchhh------------hh-------hhhhhHHHHHhhcccee
Confidence 4688999998 7999999999999999999999986543211 11 11246888888999987
Q ss_pred Eecc
Q 023515 87 HTAS 90 (281)
Q Consensus 87 h~a~ 90 (281)
.++.
T Consensus 102 i~~p 105 (188)
T d1sc6a1 102 LHVP 105 (188)
T ss_dssp ECCC
T ss_pred eccc
Confidence 6654
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=97.10 E-value=0.00043 Score=50.74 Aligned_cols=73 Identities=16% Similarity=0.122 Sum_probs=52.5
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
.++++|+|.|+ |+.+++++..|.+.+.+|+++.|+.++.+.+.+..... .++..+..|-. .+..+|+||
T Consensus 16 ~~~k~vlIlGa-GGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~---~~~~~~~~~~~-------~~~~~diiI 84 (171)
T d1p77a1 16 RPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPY---GNIQAVSMDSI-------PLQTYDLVI 84 (171)
T ss_dssp CTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGG---SCEEEEEGGGC-------CCSCCSEEE
T ss_pred CCCCEEEEECC-cHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhc---cccchhhhccc-------cccccceee
Confidence 46889999995 88899999999998889999999987766655543321 23444443321 135789999
Q ss_pred Eecc
Q 023515 87 HTAS 90 (281)
Q Consensus 87 h~a~ 90 (281)
|+..
T Consensus 85 N~tp 88 (171)
T d1p77a1 85 NATS 88 (171)
T ss_dssp ECCC
T ss_pred eccc
Confidence 9864
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=97.07 E-value=0.00047 Score=47.83 Aligned_cols=68 Identities=16% Similarity=0.143 Sum_probs=47.5
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEE-EcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----CCc
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKAS-VRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-----GCD 83 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-----~~d 83 (281)
|||.|.|++|.+|+.+.+.+.++|+++++. +++.. +.+ . ..+ +..|++.|+.+.+.++ ++.
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~--~~~------~--~~D---VvIDFS~p~~~~~~l~~~~~~~~p 67 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGV--EEL------D--SPD---VVIDFSSPEALPKTVDLCKKYRAG 67 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEE--EEC------S--CCS---EEEECSCGGGHHHHHHHHHHHTCE
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcH--HHh------c--cCC---EEEEecCHHHHHHHHHHHHhcCCC
Confidence 579999999999999999999999987764 33221 110 0 112 3569999988777765 666
Q ss_pred EeEEecc
Q 023515 84 GVCHTAS 90 (281)
Q Consensus 84 ~Vih~a~ 90 (281)
+|+=..|
T Consensus 68 ~ViGTTG 74 (128)
T d1vm6a3 68 LVLGTTA 74 (128)
T ss_dssp EEECCCS
T ss_pred EEEEcCC
Confidence 7765544
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=97.07 E-value=0.00026 Score=51.84 Aligned_cols=39 Identities=21% Similarity=0.350 Sum_probs=31.9
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCC--EEEEEEcCCCCcch
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKK 48 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~ 48 (281)
||+|+|.| .|.+|..+++.|.+.|+ +|++++|+++..+.
T Consensus 1 Mk~I~IIG-~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~ 41 (171)
T d2g5ca2 1 MQNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDINPESISK 41 (171)
T ss_dssp CCEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHH
T ss_pred CCEEEEEc-cCHHHHHHHHHHHhcCCCeEEEEEECChHHHHH
Confidence 56899998 59999999999999985 78888887654433
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=97.02 E-value=0.0013 Score=44.46 Aligned_cols=96 Identities=15% Similarity=0.133 Sum_probs=63.7
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
.+++++|+|.|+ |.+|..-++.|++.|.+|++++....+. +..+.. ..+++++.....+ ..+++.+.|
T Consensus 9 ~l~~k~vlVvG~-G~va~~ka~~ll~~ga~v~v~~~~~~~~--~~~~~~----~~~i~~~~~~~~~-----~dl~~~~lv 76 (113)
T d1pjqa1 9 QLRDRDCLIVGG-GDVAERKARLLLEAGARLTVNALTFIPQ--FTVWAN----EGMLTLVEGPFDE-----TLLDSCWLA 76 (113)
T ss_dssp CCBTCEEEEECC-SHHHHHHHHHHHHTTBEEEEEESSCCHH--HHHHHT----TTSCEEEESSCCG-----GGGTTCSEE
T ss_pred EeCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeccCChH--HHHHHh----cCCceeeccCCCH-----HHhCCCcEE
Confidence 467999999995 9999999999999999999988655432 222211 1356777666643 235577888
Q ss_pred EEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
+.+.. +. .-...+.+.|++. +.+|++.+
T Consensus 77 ~~at~-------d~---------~~n~~i~~~a~~~---~ilVNv~D 104 (113)
T d1pjqa1 77 IAATD-------DD---------TVNQRVSDAAESR---RIFCNVVD 104 (113)
T ss_dssp EECCS-------CH---------HHHHHHHHHHHHT---TCEEEETT
T ss_pred eecCC-------CH---------HHHHHHHHHHHHc---CCEEEeCC
Confidence 75431 11 1124567788886 34788665
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.01 E-value=0.0003 Score=52.10 Aligned_cols=42 Identities=33% Similarity=0.380 Sum_probs=35.0
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhh
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTR 50 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~ 50 (281)
.+.+|+|+|+ |.||...+..+...|. +|+++++++++.+..+
T Consensus 28 ~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~ 70 (182)
T d1vj0a2 28 AGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE 70 (182)
T ss_dssp BTCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH
T ss_pred CCCEEEEECC-Cccchhheecccccccccccccccccccccccc
Confidence 4789999996 8999999999999996 8999999876655433
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=97.00 E-value=0.00051 Score=51.51 Aligned_cols=65 Identities=18% Similarity=0.161 Sum_probs=48.9
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+.+++|.|.| .|.||+.+++.|..-|.+|++.++....... . +....++++++++.+|+|+
T Consensus 41 l~gk~vgIiG-~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~--~----------------~~~~~~~l~~~l~~sDii~ 101 (197)
T d1j4aa1 41 VRDQVVGVVG-TGHIGQVFMQIMEGFGAKVITYDIFRNPELE--K----------------KGYYVDSLDDLYKQADVIS 101 (197)
T ss_dssp GGGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCHHHH--H----------------TTCBCSCHHHHHHHCSEEE
T ss_pred ccCCeEEEec-ccccchhHHHhHhhhcccccccCcccccccc--c----------------ceeeecccccccccccccc
Confidence 5689999999 6999999999999999999999876432111 0 1123456888899999887
Q ss_pred Eecc
Q 023515 87 HTAS 90 (281)
Q Consensus 87 h~a~ 90 (281)
.+..
T Consensus 102 ~~~p 105 (197)
T d1j4aa1 102 LHVP 105 (197)
T ss_dssp ECSC
T ss_pred ccCC
Confidence 6653
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.99 E-value=0.00031 Score=51.38 Aligned_cols=74 Identities=16% Similarity=0.158 Sum_probs=50.4
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----C
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-----G 81 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-----~ 81 (281)
.+.+|+|.|++|.+|...+..+...| .+|+++++++.+.+..+++- .. .. .|.++.+..++..+ +
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~G------a~-~~--i~~~~~~~~~~~~~~~~~~~ 97 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAG------AD-YV--INASMQDPLAEIRRITESKG 97 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHT------CS-EE--EETTTSCHHHHHHHHTTTSC
T ss_pred CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcC------Cc-ee--eccCCcCHHHHHHHHhhccc
Confidence 46789999999999999999999888 58888888875554443321 11 22 23344443444432 5
Q ss_pred CcEeEEecc
Q 023515 82 CDGVCHTAS 90 (281)
Q Consensus 82 ~d~Vih~a~ 90 (281)
+|+||.+++
T Consensus 98 ~d~vid~~g 106 (170)
T d1jvba2 98 VDAVIDLNN 106 (170)
T ss_dssp EEEEEESCC
T ss_pred chhhhcccc
Confidence 899999875
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=96.97 E-value=0.00014 Score=54.32 Aligned_cols=37 Identities=19% Similarity=0.151 Sum_probs=33.1
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCc
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP 46 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~ 46 (281)
-++|.|.|+ |.+|+.++..++..|++|++++++++..
T Consensus 4 I~~vaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l 40 (186)
T d1wdka3 4 VKQAAVLGA-GIMGGGIAYQSASKGTPILMKDINEHGI 40 (186)
T ss_dssp CSSEEEECC-HHHHHHHHHHHHHTTCCEEEECSSHHHH
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCeEEEEECCHHHH
Confidence 468999997 9999999999999999999999987543
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.93 E-value=0.0034 Score=43.39 Aligned_cols=89 Identities=19% Similarity=0.097 Sum_probs=59.3
Q ss_pred cCCCeEEEeCCc---hHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCC
Q 023515 7 AAGKVVCVTGAS---GYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGC 82 (281)
Q Consensus 7 ~~~~~ilItGat---G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 82 (281)
+..++|.|.|+| +..|..+.+.|.+.| ++|+.+..+.... ..+.-..++.++-..+
T Consensus 6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i--------------------~G~~~y~sl~dlp~~v 65 (129)
T d2csua1 6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV--------------------QGVKAYKSVKDIPDEI 65 (129)
T ss_dssp TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE--------------------TTEECBSSTTSCSSCC
T ss_pred CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcccc--------------------CCeEeecchhhcCCCC
Confidence 347899999998 999999999997766 6888875443211 1112223344444568
Q ss_pred cEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccc
Q 023515 83 DGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (281)
Q Consensus 83 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (281)
|.++-+.. -..+..+++.|.+. +++.++.+|+.
T Consensus 66 Dlvvi~vp-----------------~~~~~~~~~~~~~~-g~~~~vi~s~G 98 (129)
T d2csua1 66 DLAIIVVP-----------------KRFVKDTLIQCGEK-GVKGVVIITAG 98 (129)
T ss_dssp SEEEECSC-----------------HHHHHHHHHHHHHH-TCCEEEECCCS
T ss_pred ceEEEecC-----------------hHHhHHHHHHHHHc-CCCEEEEeccc
Confidence 88875531 12345677888887 88888888874
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=96.89 E-value=0.00045 Score=50.44 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=36.8
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhh
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHL 52 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~ 52 (281)
++++|+|.|+ |+.+++++..|.+.|. +|.++.|+.++.+.+...
T Consensus 16 ~~~~vlIlGa-GGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~ 60 (167)
T d1npya1 16 KNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAAL 60 (167)
T ss_dssp TTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHH
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHh
Confidence 5788999996 9999999999999995 799999988766665443
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=96.89 E-value=0.00046 Score=50.86 Aligned_cols=42 Identities=19% Similarity=0.206 Sum_probs=35.7
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhh
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHL 52 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~ 52 (281)
|||.|.| .|.+|.++++.|+++||+|++.+|++++...+.+.
T Consensus 2 MkIGvIG-lG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~ 43 (178)
T d1pgja2 2 MDVGVVG-LGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKA 43 (178)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH
T ss_pred CEEEEEe-ehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHc
Confidence 3699998 79999999999999999999999988766655443
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.81 E-value=0.00036 Score=50.24 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=22.2
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCC
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGY 34 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~ 34 (281)
-+|.|.||||++|..|++.|.++.+
T Consensus 2 ~kVaIvGATGyvG~eLirlL~~H~f 26 (154)
T d2gz1a1 2 YTVAVVGATGAVGAQMIKMLEESTL 26 (154)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCCS
T ss_pred CEEEEECCCcHHHHHHHHHHHcCCC
Confidence 3799999999999999999988853
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=96.78 E-value=0.0016 Score=47.66 Aligned_cols=74 Identities=11% Similarity=0.063 Sum_probs=48.4
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----C
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-----G 81 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-----~ 81 (281)
++.+|+|.|+ |.+|...+..+...| .+|+++++++.+.+...+. .......+-...+.+.+..+ +
T Consensus 28 ~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~--------Ga~~~i~~~~~~~~~~~~~~~~~~~G 98 (176)
T d2jhfa2 28 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV--------GATECVNPQDYKKPIQEVLTEMSNGG 98 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT--------TCSEEECGGGCSSCHHHHHHHHTTSC
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh--------CCeeEEecCCchhHHHHHHHHHhcCC
Confidence 4678999998 668999999999998 5888888887765553332 12222222222233333332 7
Q ss_pred CcEeEEecc
Q 023515 82 CDGVCHTAS 90 (281)
Q Consensus 82 ~d~Vih~a~ 90 (281)
+|++|.+.|
T Consensus 99 ~D~vid~~G 107 (176)
T d2jhfa2 99 VDFSFEVIG 107 (176)
T ss_dssp BSEEEECSC
T ss_pred CCEEEecCC
Confidence 899999876
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.76 E-value=0.0014 Score=47.81 Aligned_cols=75 Identities=16% Similarity=0.149 Sum_probs=48.7
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----C
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-----G 81 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-----~ 81 (281)
++.+|+|.|+ |.+|...+..+...|. +|+++++++.+.+..+++ + .. ..+..+-.+.....+.++ +
T Consensus 26 ~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~----G--a~-~~~~~~~~~~~~~~~~~~~~~g~g 97 (171)
T d1pl8a2 26 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI----G--AD-LVLQISKESPQEIARKVEGQLGCK 97 (171)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----T--CS-EEEECSSCCHHHHHHHHHHHHTSC
T ss_pred CCCEEEEECC-CccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh----C--Cc-ccccccccccccccccccccCCCC
Confidence 4678999986 9999999999999997 799999887655443332 1 11 122222223232333322 6
Q ss_pred CcEeEEecc
Q 023515 82 CDGVCHTAS 90 (281)
Q Consensus 82 ~d~Vih~a~ 90 (281)
+|+||.+.|
T Consensus 98 ~Dvvid~~G 106 (171)
T d1pl8a2 98 PEVTIECTG 106 (171)
T ss_dssp CSEEEECSC
T ss_pred ceEEEeccC
Confidence 899999876
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=96.75 E-value=0.0018 Score=46.73 Aligned_cols=95 Identities=24% Similarity=0.322 Sum_probs=54.6
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHC-CCEEEEE-EcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSR-GYTVKAS-VRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~-g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
.+||.|.|++|.+|+.+++.+.+. +.++++. +|..... .-........ .. ..++.-..+++.+++.+|+||
T Consensus 4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~-~g~d~~~~~~----~~--~~~~~~~~~~~~~~~~~DViI 76 (162)
T d1diha1 4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSL-LGSDAGELAG----AG--KTGVTVQSSLDAVKDDFDVFI 76 (162)
T ss_dssp BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTT-CSCCTTCSSS----SS--CCSCCEESCSTTTTTSCSEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchh-ccchhhhhhc----cc--cCCceeeccHHHHhcccceEE
Confidence 458999999999999999999886 5676654 4432211 1000000000 00 011111233455667899998
Q ss_pred EecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEE
Q 023515 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVL 129 (281)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~ 129 (281)
-..- -.++...++.|.++ ++ .+|.
T Consensus 77 DFs~-----------------p~~~~~~~~~a~~~-~~-~~Vi 100 (162)
T d1diha1 77 DFTR-----------------PEGTLNHLAFCRQH-GK-GMVI 100 (162)
T ss_dssp ECSC-----------------HHHHHHHHHHHHHT-TC-EEEE
T ss_pred Eecc-----------------HHHHHHHHHHHHhc-cc-eeEE
Confidence 6531 14556788899987 54 3443
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=96.72 E-value=0.0015 Score=49.01 Aligned_cols=63 Identities=21% Similarity=0.197 Sum_probs=48.1
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+.+++|.|.| .|.||+.+++.|..-|.+|++.++...+... ..+ +..+++++++.+|+|+
T Consensus 43 l~~ktvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~-----------~~~--------~~~~l~~l~~~~D~v~ 102 (199)
T d1dxya1 43 LGQQTVGVMG-TGHIGQVAIKLFKGFGAKVIAYDPYPMKGDH-----------PDF--------DYVSLEDLFKQSDVID 102 (199)
T ss_dssp GGGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCSSCC-----------TTC--------EECCHHHHHHHCSEEE
T ss_pred ccceeeeeee-cccccccccccccccceeeeccCCccchhhh-----------cch--------hHHHHHHHHHhcccce
Confidence 4578999999 6999999999999999999999986543211 111 2245788888899887
Q ss_pred Eec
Q 023515 87 HTA 89 (281)
Q Consensus 87 h~a 89 (281)
.+.
T Consensus 103 ~~~ 105 (199)
T d1dxya1 103 LHV 105 (199)
T ss_dssp ECC
T ss_pred eee
Confidence 654
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=96.72 E-value=0.0022 Score=47.75 Aligned_cols=66 Identities=15% Similarity=0.135 Sum_probs=49.2
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+.++++.|.| .|.||+.+++.|..-|.+|++.++....... .. .++...++++++++.+|+|+
T Consensus 47 L~gktvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~-~~---------------~~~~~~~~l~~ll~~sD~i~ 109 (193)
T d1mx3a1 47 IRGETLGIIG-LGRVGQAVALRAKAFGFNVLFYDPYLSDGVE-RA---------------LGLQRVSTLQDLLFHSDCVT 109 (193)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTSCTTHH-HH---------------HTCEECSSHHHHHHHCSEEE
T ss_pred eeCceEEEec-cccccccceeeeeccccceeeccCcccccch-hh---------------hccccccchhhccccCCEEE
Confidence 5689999999 6999999999999999999999886543221 00 01222356888888899877
Q ss_pred Eec
Q 023515 87 HTA 89 (281)
Q Consensus 87 h~a 89 (281)
.+.
T Consensus 110 ~~~ 112 (193)
T d1mx3a1 110 LHC 112 (193)
T ss_dssp ECC
T ss_pred Eee
Confidence 655
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=96.70 E-value=0.0011 Score=51.26 Aligned_cols=35 Identities=34% Similarity=0.451 Sum_probs=32.0
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCC
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDP 43 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 43 (281)
..++|+|.|| |..|...+..|.++|++|+++.|..
T Consensus 5 ~~~kVvVIGa-GiaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 5 SQKRVVVLGS-GVIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp CSCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCcEEEECc-cHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 4678999996 9999999999999999999999864
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=96.70 E-value=0.0015 Score=44.67 Aligned_cols=37 Identities=19% Similarity=0.188 Sum_probs=33.1
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND 45 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 45 (281)
..++++|.|| |++|-.++..|.++|.+|+++.+.+.-
T Consensus 29 ~~~~vvIIGg-G~iG~E~A~~l~~~g~~Vtli~~~~~~ 65 (121)
T d1d7ya2 29 PQSRLLIVGG-GVIGLELAATARTAGVHVSLVETQPRL 65 (121)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred cCCeEEEECc-chhHHHHHHHhhcccceEEEEeecccc
Confidence 3689999995 999999999999999999999997753
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.65 E-value=0.00076 Score=48.68 Aligned_cols=78 Identities=14% Similarity=0.132 Sum_probs=59.2
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 87 (281)
...+|+|.|+ |-.|.+-++.....|.+|++++++.+..+.++.... ..++.. ..+.+.+.+.++++|+||.
T Consensus 31 ~pa~V~ViGa-GvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~-----~~~~~~---~~~~~~l~~~~~~aDivI~ 101 (168)
T d1pjca1 31 KPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFG-----SRVELL---YSNSAEIETAVAEADLLIG 101 (168)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-----GGSEEE---ECCHHHHHHHHHTCSEEEE
T ss_pred CCcEEEEECC-ChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhc-----ccceee---hhhhhhHHHhhccCcEEEE
Confidence 4578999996 999999999999999999999998776655544332 123332 3455678888999999999
Q ss_pred ecccCCC
Q 023515 88 TASPFYH 94 (281)
Q Consensus 88 ~a~~~~~ 94 (281)
.+-.+..
T Consensus 102 aalipG~ 108 (168)
T d1pjca1 102 AVLVPGR 108 (168)
T ss_dssp CCCCTTS
T ss_pred eeecCCc
Confidence 8865443
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=96.57 E-value=0.0021 Score=44.08 Aligned_cols=36 Identities=22% Similarity=0.168 Sum_probs=32.4
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN 44 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (281)
+.++|+|.|| |++|-.++..|.+.|.+|+++.+.+.
T Consensus 29 ~~k~vvViGg-G~iG~E~A~~l~~~g~~Vtlie~~~~ 64 (123)
T d1nhpa2 29 EVNNVVVIGS-GYIGIEAAEAFAKAGKKVTVIDILDR 64 (123)
T ss_dssp TCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCCEEEEECC-hHHHHHHHHHhhccceEEEEEEecCc
Confidence 4679999985 99999999999999999999988764
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.56 E-value=0.0021 Score=46.89 Aligned_cols=74 Identities=11% Similarity=0.042 Sum_probs=46.6
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----C
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-----G 81 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-----~ 81 (281)
++.+|+|.|+ |.+|...+..+...|. .|++.++++.+.+..+++ +...+.-.-.+.+.+.+.++ +
T Consensus 28 ~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l--------Ga~~~i~~~~~~~~~~~~~~~~~~~g 98 (176)
T d2fzwa2 28 PGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF--------GATECINPQDFSKPIQEVLIEMTDGG 98 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH--------TCSEEECGGGCSSCHHHHHHHHTTSC
T ss_pred CCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh--------CCcEEEeCCchhhHHHHHHHHHcCCC
Confidence 4778999997 5789999999988895 566666666554443332 12222212222334444432 7
Q ss_pred CcEeEEecc
Q 023515 82 CDGVCHTAS 90 (281)
Q Consensus 82 ~d~Vih~a~ 90 (281)
+|+||.+.|
T Consensus 99 ~D~vid~~G 107 (176)
T d2fzwa2 99 VDYSFECIG 107 (176)
T ss_dssp BSEEEECSC
T ss_pred CcEeeecCC
Confidence 899999876
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.53 E-value=0.00089 Score=49.11 Aligned_cols=73 Identities=18% Similarity=0.130 Sum_probs=48.7
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----C
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-----G 81 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-----~ 81 (281)
++.+|+|.|+ |.||...+..+...|. +|+++++++.+.+..+++ ++.. ..|..+.+..+.+.+ +
T Consensus 27 ~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l--------Ga~~-~i~~~~~~~~~~v~~~t~g~G 96 (174)
T d1jqba2 27 MGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY--------GATD-ILNYKNGHIEDQVMKLTNGKG 96 (174)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH--------TCSE-EECGGGSCHHHHHHHHTTTSC
T ss_pred CCCEEEEEcC-CcchhhhhhhhhcccccccccccchhhhHHHHHhh--------Cccc-cccccchhHHHHHHHHhhccC
Confidence 4778999986 9999999998888895 799998876554443332 1111 124444333333332 5
Q ss_pred CcEeEEecc
Q 023515 82 CDGVCHTAS 90 (281)
Q Consensus 82 ~d~Vih~a~ 90 (281)
+|+||.+++
T Consensus 97 ~D~vid~~g 105 (174)
T d1jqba2 97 VDRVIMAGG 105 (174)
T ss_dssp EEEEEECSS
T ss_pred cceEEEccC
Confidence 899999986
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=96.52 E-value=0.0036 Score=46.30 Aligned_cols=67 Identities=16% Similarity=0.133 Sum_probs=49.6
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+.++++.|.| .|.||+++++.|..-|.+|...+|........... .+....+++++++++|+|+
T Consensus 42 l~~~~vgiiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~---------------~~~~~~~l~~~l~~sD~v~ 105 (188)
T d2naca1 42 LEAMHVGTVA-AGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKEL---------------NLTWHATREDMYPVCDVVT 105 (188)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHH---------------TCEECSSHHHHGGGCSEEE
T ss_pred ccccceeecc-ccccchhhhhhhhccCceEEEEeeccccccccccc---------------cccccCCHHHHHHhccchh
Confidence 4688999999 69999999999988899999999876443331111 1223466788888899886
Q ss_pred Eec
Q 023515 87 HTA 89 (281)
Q Consensus 87 h~a 89 (281)
-+.
T Consensus 106 ~~~ 108 (188)
T d2naca1 106 LNC 108 (188)
T ss_dssp ECS
T ss_pred hcc
Confidence 654
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=96.48 E-value=0.0017 Score=48.15 Aligned_cols=40 Identities=13% Similarity=0.238 Sum_probs=33.4
Q ss_pred CCeEEE-eCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcch
Q 023515 9 GKVVCV-TGASGYIASWLVKLLLSRGYTVKASVRDPNDPKK 48 (281)
Q Consensus 9 ~~~ilI-tGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~ 48 (281)
+.+++| +||+|.+|...++.....|.+|+++.|+.++.+.
T Consensus 29 g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~ 69 (189)
T d1gu7a2 29 GKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDE 69 (189)
T ss_dssp TTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHH
T ss_pred CCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccch
Confidence 556666 6999999999999988889999999988766544
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.47 E-value=0.0036 Score=45.79 Aligned_cols=73 Identities=10% Similarity=0.050 Sum_probs=49.7
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCc-HHHHh-----c
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGS-FDSIV-----D 80 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-~~~~~-----~ 80 (281)
++.+|+|.|+ |.+|...+..+...| .+|+++++++++.+...++ +.+.+. |..+.+. ...+. .
T Consensus 29 ~g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~--------GA~~~i-n~~~~~~~~~~~~~~~~g~ 98 (176)
T d1d1ta2 29 PGSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV--------GATECI-SPKDSTKPISEVLSEMTGN 98 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH--------TCSEEE-CGGGCSSCHHHHHHHHHTS
T ss_pred CCCEEEEECC-CchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc--------CCcEEE-CccccchHHHHHHHHhccc
Confidence 4678999985 999999999999999 5899999988776554433 122222 3333222 22222 2
Q ss_pred CCcEeEEecc
Q 023515 81 GCDGVCHTAS 90 (281)
Q Consensus 81 ~~d~Vih~a~ 90 (281)
++|++|.+.+
T Consensus 99 G~d~vi~~~g 108 (176)
T d1d1ta2 99 NVGYTFEVIG 108 (176)
T ss_dssp CCCEEEECSC
T ss_pred cceEEEEeCC
Confidence 7999998875
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.46 E-value=0.00062 Score=50.61 Aligned_cols=72 Identities=14% Similarity=0.065 Sum_probs=45.0
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEE-EEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----CCc
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKA-SVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-----GCD 83 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-----~~d 83 (281)
.+|||+||+|.+|...++-+...|.++++ +++++++...+.... +.+ ...|.++.+ +.+.++ ++|
T Consensus 32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~-------gad-~vi~~~~~~-~~~~~~~~~~~GvD 102 (187)
T d1vj1a2 32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSEL-------GFD-AAVNYKTGN-VAEQLREACPGGVD 102 (187)
T ss_dssp CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHS-------CCS-EEEETTSSC-HHHHHHHHCTTCEE
T ss_pred CEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcc-------cce-EEeeccchh-HHHHHHHHhccCce
Confidence 67999999999999999999889976444 555544333322211 111 123444433 333332 699
Q ss_pred EeEEecc
Q 023515 84 GVCHTAS 90 (281)
Q Consensus 84 ~Vih~a~ 90 (281)
+||.+.|
T Consensus 103 vv~D~vG 109 (187)
T d1vj1a2 103 VYFDNVG 109 (187)
T ss_dssp EEEESSC
T ss_pred EEEecCC
Confidence 9998875
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=96.46 E-value=0.0047 Score=44.35 Aligned_cols=58 Identities=21% Similarity=0.129 Sum_probs=46.5
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+.+|+|+|.|.+..+|+.++..|.++|..|+.+.... ..+.+..+++|+||
T Consensus 35 l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t-----------------------------~~l~~~~~~ADivI 85 (166)
T d1b0aa1 35 TFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT-----------------------------KNLRHHVENADLLI 85 (166)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC-----------------------------SCHHHHHHHCSEEE
T ss_pred cccceEEEEeccccccHHHHHHHHHhhcccccccccc-----------------------------chhHHHHhhhhHhh
Confidence 5689999999999999999999999999988774321 23455667889999
Q ss_pred EecccCC
Q 023515 87 HTASPFY 93 (281)
Q Consensus 87 h~a~~~~ 93 (281)
..+|...
T Consensus 86 ~a~G~p~ 92 (166)
T d1b0aa1 86 VAVGKPG 92 (166)
T ss_dssp ECSCCTT
T ss_pred hhccCcc
Confidence 9888544
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.45 E-value=0.0025 Score=43.23 Aligned_cols=35 Identities=26% Similarity=0.218 Sum_probs=32.1
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN 44 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (281)
.++++|.|| |++|-.++..|.+.|.+|+++.|.+.
T Consensus 22 p~~v~IiGg-G~ig~E~A~~l~~~G~~Vtlve~~~~ 56 (117)
T d1ebda2 22 PKSLVVIGG-GYIGIELGTAYANFGTKVTILEGAGE 56 (117)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCeEEEECC-CccceeeeeeecccccEEEEEEecce
Confidence 478999996 99999999999999999999998764
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.45 E-value=0.0037 Score=44.80 Aligned_cols=67 Identities=22% Similarity=0.214 Sum_probs=50.2
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+.+|+++|.| .|.||+.+++.|...|.+|++.++++.+ .++... |......+++++...|++|
T Consensus 22 l~Gk~v~V~G-yG~iG~g~A~~~rg~G~~V~v~e~dp~~--al~A~~--------------dG~~v~~~~~a~~~adivv 84 (163)
T d1li4a1 22 IAGKVAVVAG-YGDVGKGCAQALRGFGARVIITEIDPIN--ALQAAM--------------EGYEVTTMDEACQEGNIFV 84 (163)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHH--HHHHHH--------------TTCEECCHHHHTTTCSEEE
T ss_pred ecCCEEEEec-cccccHHHHHHHHhCCCeeEeeecccch--hHHhhc--------------CceEeeehhhhhhhccEEE
Confidence 4689999999 8999999999999999999999887632 222221 2222335677788888888
Q ss_pred Eecc
Q 023515 87 HTAS 90 (281)
Q Consensus 87 h~a~ 90 (281)
-+.+
T Consensus 85 taTG 88 (163)
T d1li4a1 85 TTTG 88 (163)
T ss_dssp ECSS
T ss_pred ecCC
Confidence 7765
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=96.44 E-value=0.0041 Score=46.10 Aligned_cols=67 Identities=15% Similarity=0.063 Sum_probs=49.2
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+.++++.|.| .|.||+.+++.|..-|.+|...++........... .....++++++++.+|+|+
T Consensus 45 l~g~tvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~---------------~~~~~~~l~~ll~~sD~v~ 108 (191)
T d1gdha1 45 LDNKTLGIYG-FGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASY---------------QATFHDSLDSLLSVSQFFS 108 (191)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHH---------------TCEECSSHHHHHHHCSEEE
T ss_pred ecccceEEee-cccchHHHHHHHHhhccccccccccccccchhhcc---------------cccccCCHHHHHhhCCeEE
Confidence 4579999999 59999999999998999999998866543221111 1122356888898999887
Q ss_pred Eec
Q 023515 87 HTA 89 (281)
Q Consensus 87 h~a 89 (281)
-+.
T Consensus 109 l~~ 111 (191)
T d1gdha1 109 LNA 111 (191)
T ss_dssp ECC
T ss_pred ecC
Confidence 654
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=96.43 E-value=0.00025 Score=53.32 Aligned_cols=38 Identities=24% Similarity=0.285 Sum_probs=33.4
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN 44 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (281)
++++++|+|-| .|.+|+++++.|.+.|.+|++.+.+..
T Consensus 24 ~L~gk~v~IqG-~G~VG~~~A~~L~~~Gakvvv~d~d~~ 61 (201)
T d1c1da1 24 SLDGLTVLVQG-LGAVGGSLASLAAEAGAQLLVADTDTE 61 (201)
T ss_dssp CSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEecchHH
Confidence 46789999999 799999999999999999998876543
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.39 E-value=0.0043 Score=45.30 Aligned_cols=74 Identities=15% Similarity=0.069 Sum_probs=47.7
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHh-----cC
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV-----DG 81 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-----~~ 81 (281)
.+.+|+|.|+ |.||...+..+...|. .|++.++++++.+..+++ +.+.+.-.-...+...... .+
T Consensus 28 ~G~~VlV~G~-G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~--------Ga~~~i~~~~~~~~~~~~~~~~~~~G 98 (174)
T d1e3ia2 28 PGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL--------GATDCLNPRELDKPVQDVITELTAGG 98 (174)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT--------TCSEEECGGGCSSCHHHHHHHHHTSC
T ss_pred CCCEEEEECC-ChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh--------CCCcccCCccchhhhhhhHhhhhcCC
Confidence 4678999985 9999999999999996 677778777654443332 1222211112222333333 27
Q ss_pred CcEeEEecc
Q 023515 82 CDGVCHTAS 90 (281)
Q Consensus 82 ~d~Vih~a~ 90 (281)
+|+||.++|
T Consensus 99 ~d~vie~~G 107 (174)
T d1e3ia2 99 VDYSLDCAG 107 (174)
T ss_dssp BSEEEESSC
T ss_pred CcEEEEecc
Confidence 999999986
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=96.38 E-value=0.0067 Score=44.21 Aligned_cols=85 Identities=13% Similarity=-0.064 Sum_probs=55.7
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCC-----CcEEE-------EEcCC--CCcCc
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGAS-----ERLQL-------FKANL--LEEGS 74 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~-----~~~~~-------~~~D~--~~~~~ 74 (281)
.-+|+|.|| |-.|.+-++.....|.+|.++|.+....+.++.+....... ...+. ..-+. ...+.
T Consensus 29 pa~VvViGa-GvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~ 107 (183)
T d1l7da1 29 PARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEA 107 (183)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHH
T ss_pred CcEEEEEcC-cHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHH
Confidence 458999996 99999999999999999999999998877766653211100 00000 00011 11234
Q ss_pred HHHHhcCCcEeEEecccCCC
Q 023515 75 FDSIVDGCDGVCHTASPFYH 94 (281)
Q Consensus 75 ~~~~~~~~d~Vih~a~~~~~ 94 (281)
+.+.++++|+||-.+-.+..
T Consensus 108 l~~~l~~aDlVI~talipG~ 127 (183)
T d1l7da1 108 VLKELVKTDIAITTALIPGK 127 (183)
T ss_dssp HHHHHTTCSEEEECCCCTTS
T ss_pred HHHHHHhhhhheeeeecCCc
Confidence 66667799999998865443
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.35 E-value=0.033 Score=37.36 Aligned_cols=82 Identities=20% Similarity=0.239 Sum_probs=53.9
Q ss_pred CeEEEeCCc---hHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 10 KVVCVTGAS---GYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 10 ~~ilItGat---G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
|+|.|.|+| +..|..+++.|++.||+|+.+..+.+ +. ..+.-..++.++-+.+|.++
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~--~i------------------~G~~~y~sl~~lp~~~D~vv 61 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYD--EI------------------EGLKCYRSVRELPKDVDVIV 61 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCS--EE------------------TTEECBSSGGGSCTTCCEEE
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccc--cc------------------cCccccccchhccccceEEE
Confidence 679999997 77999999999999999887743221 11 12233344555555788877
Q ss_pred EecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEE
Q 023515 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVL 129 (281)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~ 129 (281)
-+.. -..+..+++.|.+. +.+.+++
T Consensus 62 i~vp-----------------~~~~~~~l~~~~~~-g~k~v~~ 86 (116)
T d1y81a1 62 FVVP-----------------PKVGLQVAKEAVEA-GFKKLWF 86 (116)
T ss_dssp ECSC-----------------HHHHHHHHHHHHHT-TCCEEEE
T ss_pred EEeC-----------------HHHHHHHHHHHHhc-CCceEEe
Confidence 5431 12334567777776 7776654
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.27 E-value=0.0042 Score=45.77 Aligned_cols=65 Identities=23% Similarity=0.212 Sum_probs=47.6
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+.++++.|.| .|.||+.+++.|..-|.+|++.++...+.... .. .+ ...+++++++.+|+|+
T Consensus 42 l~~k~vgiiG-~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~-~~--------~~--------~~~~l~ell~~sDiv~ 103 (184)
T d1ygya1 42 IFGKTVGVVG-LGRIGQLVAQRIAAFGAYVVAYDPYVSPARAA-QL--------GI--------ELLSLDDLLARADFIS 103 (184)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTSCHHHHH-HH--------TC--------EECCHHHHHHHCSEEE
T ss_pred ccceeeeecc-ccchhHHHHHHhhhccceEEeecCCCChhHHh-hc--------Cc--------eeccHHHHHhhCCEEE
Confidence 4678999999 69999999999998899999998765432221 00 11 1245788888999887
Q ss_pred Eec
Q 023515 87 HTA 89 (281)
Q Consensus 87 h~a 89 (281)
-+.
T Consensus 104 ~~~ 106 (184)
T d1ygya1 104 VHL 106 (184)
T ss_dssp ECC
T ss_pred EcC
Confidence 655
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.26 E-value=0.0034 Score=45.95 Aligned_cols=81 Identities=11% Similarity=0.121 Sum_probs=47.0
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhhhhcc----CCCC-cEEEEEcCCCCcCcHHHHhcCC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALD----GASE-RLQLFKANLLEEGSFDSIVDGC 82 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~----~~~~-~~~~~~~D~~~~~~~~~~~~~~ 82 (281)
|-||.|-| .|.||+.++|.|.+++ .+|+++....+.... ..+.... .... ...+-...+.-...+..+..++
T Consensus 1 MIKVaING-fGRIGR~v~Ral~~~~dievVaInd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~v 78 (178)
T d1b7go1 1 MVNVAVNG-YGTIGKRVADAIIKQPDMKLVGVAKTSPNYEA-FIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTS 78 (178)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEECSSCSHHH-HHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHC
T ss_pred CeEEEEEC-CCHHHHHHHHHHHhCCCCEEEEEECCCCcHHH-HHhcccCcceeccCccceeccccceecCCchhhhhhcC
Confidence 44799998 8999999999999875 688887654332221 1111100 0000 0011111122234566666789
Q ss_pred cEeEEeccc
Q 023515 83 DGVCHTASP 91 (281)
Q Consensus 83 d~Vih~a~~ 91 (281)
|+||-|.|.
T Consensus 79 DiViecTG~ 87 (178)
T d1b7go1 79 DIVVDTTPN 87 (178)
T ss_dssp SEEEECCST
T ss_pred CEEEECCCC
Confidence 999999874
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.26 E-value=0.002 Score=47.06 Aligned_cols=73 Identities=12% Similarity=0.062 Sum_probs=45.6
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEE-EEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc----CC
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTV-KASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----GC 82 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V-~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~ 82 (281)
.+.+|+|.|+ |.||...+..+...|.++ ++.++++.+.+..+++- -..+ .|..+.+..+++.+ ++
T Consensus 28 ~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~G-------a~~~--i~~~~~~~~~~i~~~t~gg~ 97 (174)
T d1f8fa2 28 PASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLG-------ATHV--INSKTQDPVAAIKEITDGGV 97 (174)
T ss_dssp TTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHT-------CSEE--EETTTSCHHHHHHHHTTSCE
T ss_pred CCCEEEEeCC-CHHHhhhhhcccccccceeeeeccHHHHHHHHHHcC-------CeEE--EeCCCcCHHHHHHHHcCCCC
Confidence 4678999997 999999998888888754 55566554444433321 1122 24444333333222 58
Q ss_pred cEeEEecc
Q 023515 83 DGVCHTAS 90 (281)
Q Consensus 83 d~Vih~a~ 90 (281)
|+||.+.+
T Consensus 98 D~vid~~G 105 (174)
T d1f8fa2 98 NFALESTG 105 (174)
T ss_dssp EEEEECSC
T ss_pred cEEEEcCC
Confidence 99999876
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.24 E-value=0.0032 Score=43.03 Aligned_cols=35 Identities=20% Similarity=0.220 Sum_probs=32.0
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN 44 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (281)
.++++|.|| |+||-.++..|.+.|.+|+++.|.+.
T Consensus 23 p~~~vIiG~-G~ig~E~A~~l~~lG~~Vtii~~~~~ 57 (122)
T d1v59a2 23 PKRLTIIGG-GIIGLEMGSVYSRLGSKVTVVEFQPQ 57 (122)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCeEEEECC-CchHHHHHHHHHhhCcceeEEEeccc
Confidence 578999995 99999999999999999999998764
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=96.24 E-value=0.0029 Score=42.95 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=31.9
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN 44 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (281)
.++|+|.|| |++|-.++..|.+.|.+|+++.|.+.
T Consensus 22 p~~v~IiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~~ 56 (117)
T d1onfa2 22 SKKIGIVGS-GYIAVELINVIKRLGIDSYIFARGNR 56 (117)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred CCEEEEECC-chHHHHHHHHHHhccccceeeehhcc
Confidence 578999996 99999999999999999999998753
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.24 E-value=0.0028 Score=43.39 Aligned_cols=35 Identities=29% Similarity=0.352 Sum_probs=31.6
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN 44 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (281)
.++++|.|| |++|-.++..|.+.|++|+++.|.+.
T Consensus 32 ~~~vvIiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~~ 66 (122)
T d1xhca2 32 SGEAIIIGG-GFIGLELAGNLAEAGYHVKLIHRGAM 66 (122)
T ss_dssp HSEEEEEEC-SHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred CCcEEEECC-cHHHHHHHHHhhcccceEEEEecccc
Confidence 478999995 99999999999999999999988754
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.21 E-value=0.00043 Score=51.02 Aligned_cols=79 Identities=15% Similarity=0.094 Sum_probs=50.0
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
..++|+|+|.|+ |+.+++++..|.+.| +|.++.|+.++.+.+............... .+.+.+.......|++
T Consensus 15 ~~~~k~vlIlGa-GG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~dli 87 (177)
T d1nvta1 15 RVKDKNIVIYGA-GGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEE-----VKFSGLDVDLDGVDII 87 (177)
T ss_dssp CCCSCEEEEECC-SHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHH-----EEEECTTCCCTTCCEE
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhh-----hhhhhhhhccchhhhh
Confidence 357899999995 889999999997666 999999998777665543321110000000 0112223334468999
Q ss_pred EEeccc
Q 023515 86 CHTASP 91 (281)
Q Consensus 86 ih~a~~ 91 (281)
||+...
T Consensus 88 In~tp~ 93 (177)
T d1nvta1 88 INATPI 93 (177)
T ss_dssp EECSCT
T ss_pred ccCCcc
Confidence 998643
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.18 E-value=0.0088 Score=43.18 Aligned_cols=36 Identities=28% Similarity=0.298 Sum_probs=32.6
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcC
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRD 42 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~ 42 (281)
+.+|+|.|.|.+..+|+.++..|+++|..|+.+...
T Consensus 37 l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~ 72 (170)
T d1a4ia1 37 IAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK 72 (170)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred cccceEEEEecCCccchHHHHHHHhccCceEEEecc
Confidence 479999999999999999999999999999887643
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=96.18 E-value=0.0037 Score=42.29 Aligned_cols=36 Identities=25% Similarity=0.171 Sum_probs=32.2
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND 45 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 45 (281)
.++++|.|| |++|-.++..|.+.|.+|+++.|.+.-
T Consensus 21 p~~vvIiGg-G~ig~E~A~~l~~~G~~Vtlve~~~~~ 56 (116)
T d1gesa2 21 PERVAVVGA-GYIGVELGGVINGLGAKTHLFEMFDAP 56 (116)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CCEEEEECC-ChhhHHHHHHhhccccEEEEEeecchh
Confidence 478999995 999999999999999999999997643
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=96.16 E-value=0.0051 Score=44.86 Aligned_cols=73 Identities=15% Similarity=0.092 Sum_probs=48.4
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcC-cHHHHh-----c
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEG-SFDSIV-----D 80 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~-----~ 80 (281)
++.+|+|.|+ |.+|...+..+...|. +|+++++++++.+..+++ +.+.+ .|..+.+ .+.+.. .
T Consensus 27 ~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l--------Ga~~~-i~~~~~d~~~~~~~~~~~~~ 96 (174)
T d1p0fa2 27 PGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL--------GATEC-LNPKDYDKPIYEVICEKTNG 96 (174)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT--------TCSEE-ECGGGCSSCHHHHHHHHTTS
T ss_pred CCCEEEEECC-CchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc--------CCcEE-EcCCCchhHHHHHHHHhcCC
Confidence 4788999995 9999999999999995 788888887665554333 12221 1333222 223332 2
Q ss_pred CCcEeEEecc
Q 023515 81 GCDGVCHTAS 90 (281)
Q Consensus 81 ~~d~Vih~a~ 90 (281)
+.|+||-+++
T Consensus 97 G~d~vid~~g 106 (174)
T d1p0fa2 97 GVDYAVECAG 106 (174)
T ss_dssp CBSEEEECSC
T ss_pred CCcEEEEcCC
Confidence 6899998875
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=96.15 E-value=0.0046 Score=42.03 Aligned_cols=35 Identities=23% Similarity=0.093 Sum_probs=32.2
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN 44 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (281)
.++++|.|| |+||-.++..|.+.|++|+++.|...
T Consensus 22 p~~i~IiG~-G~ig~E~A~~l~~~G~~Vtiv~~~~~ 56 (119)
T d3lada2 22 PGKLGVIGA-GVIGLELGSVWARLGAEVTVLEAMDK 56 (119)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCeEEEECC-ChHHHHHHHHHHHcCCceEEEEeecc
Confidence 578999995 99999999999999999999998764
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.11 E-value=0.004 Score=44.93 Aligned_cols=40 Identities=23% Similarity=0.239 Sum_probs=33.8
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcch
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKK 48 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~ 48 (281)
++.+|+|.|+ |.+|...+..+...|++|+++++++.+.+.
T Consensus 27 ~g~~VlV~Ga-G~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~ 66 (166)
T d1llua2 27 PGQWVAISGI-GGLGHVAVQYARAMGLHVAAIDIDDAKLEL 66 (166)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred CCCEEEEeec-cccHHHHHHHHHHcCCccceecchhhHHHh
Confidence 4788999986 999999999888889999999988765544
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=96.10 E-value=0.016 Score=42.93 Aligned_cols=74 Identities=15% Similarity=0.136 Sum_probs=47.8
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCc---HHHHhc--C
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGS---FDSIVD--G 81 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~---~~~~~~--~ 81 (281)
.+.+|+|.|+ |.+|...+..+...|. +|+++++++.+.+...++ +...+. |-.+.+. +.++.. +
T Consensus 25 ~G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~--------Ga~~~~-~~~~~~~~~~i~~~t~g~g 94 (195)
T d1kola2 25 PGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ--------GFEIAD-LSLDTPLHEQIAALLGEPE 94 (195)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT--------TCEEEE-TTSSSCHHHHHHHHHSSSC
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhhcccceeeecccchhhHhhhhc--------cccEEE-eCCCcCHHHHHHHHhCCCC
Confidence 4789999985 9999888888877775 788888876554443332 233322 3333222 223322 6
Q ss_pred CcEeEEeccc
Q 023515 82 CDGVCHTASP 91 (281)
Q Consensus 82 ~d~Vih~a~~ 91 (281)
+|++|.+.|.
T Consensus 95 ~D~vid~vG~ 104 (195)
T d1kola2 95 VDCAVDAVGF 104 (195)
T ss_dssp EEEEEECCCT
T ss_pred cEEEEECccc
Confidence 8999999874
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=96.10 E-value=0.0045 Score=43.01 Aligned_cols=36 Identities=19% Similarity=0.225 Sum_probs=32.7
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN 44 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (281)
..++|+|.|| |++|-.++..|.+.|.+|+++.+.+.
T Consensus 34 ~~k~v~VIGg-G~iG~E~A~~l~~~g~~Vtvie~~~~ 69 (133)
T d1q1ra2 34 ADNRLVVIGG-GYIGLEVAATAIKANMHVTLLDTAAR 69 (133)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred cCCEEEEECC-chHHHHHHHHHHhhCcceeeeeeccc
Confidence 3689999995 99999999999999999999998764
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.07 E-value=0.0044 Score=42.52 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=32.0
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN 44 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (281)
.++++|.|| |+||-.++..|.+.|.+|+++.|.+.
T Consensus 22 pk~vvIvGg-G~iG~E~A~~l~~~G~~Vtlv~~~~~ 56 (125)
T d3grsa2 22 PGRSVIVGA-GYIAVEMAGILSALGSKTSLMIRHDK 56 (125)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCEEEEEcC-CccHHHHHHHHhcCCcEEEEEeeccc
Confidence 478999996 99999999999999999999999764
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.06 E-value=0.015 Score=40.28 Aligned_cols=71 Identities=15% Similarity=0.189 Sum_probs=45.9
Q ss_pred eEEEeCCchHHHHHHHHHHHHC-CCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----CCcE
Q 023515 11 VVCVTGASGYIASWLVKLLLSR-GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-----GCDG 84 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-----~~d~ 84 (281)
||.|.|++|.+|+.+++.+.+. ++++.+..-..+....+.. . ..+ +..|++.|+.+.+.++ ++-.
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~~~~~~~----~--~~D---vvIDFS~p~~~~~~~~~~~~~~~~~ 71 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPLSLLTD----G--NTE---VVIDFTHPDVVMGNLEFLIDNGIHA 71 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCCTHHHHT----T--TCS---EEEECCCTTTHHHHHHHHHHTTCEE
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCchhhhcc----c--cCC---EEEEcccHHHHHHHHHHHHhcCCCE
Confidence 6999999999999999998876 5776664332222221110 0 112 4579999988777664 6667
Q ss_pred eEEecc
Q 023515 85 VCHTAS 90 (281)
Q Consensus 85 Vih~a~ 90 (281)
|+=..|
T Consensus 72 ViGTTG 77 (135)
T d1yl7a1 72 VVGTTG 77 (135)
T ss_dssp EECCCC
T ss_pred EEeccc
Confidence 764443
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=96.05 E-value=0.0014 Score=46.79 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=33.9
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhh
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRH 51 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~ 51 (281)
|+|.+.|+ |.+|.++++.|++.| ++|.+.+|++++.+.+.+
T Consensus 1 MkI~fIG~-G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~ 42 (152)
T d1yqga2 1 MNVYFLGG-GNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEK 42 (152)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHH
T ss_pred CEEEEEcC-cHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhh
Confidence 57999985 999999999999887 999999998766555433
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=96.00 E-value=0.0038 Score=42.15 Aligned_cols=35 Identities=23% Similarity=0.191 Sum_probs=31.6
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN 44 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (281)
.++++|.|| |++|-.++..|.+.|++|+++.|.+.
T Consensus 21 p~~vvIiGg-G~~G~E~A~~l~~~g~~Vtlve~~~~ 55 (115)
T d1lvla2 21 PQHLVVVGG-GYIGLELGIAYRKLGAQVSVVEARER 55 (115)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CCeEEEECC-CHHHHHHHHHHhhcccceEEEeeecc
Confidence 478999995 99999999999999999999988754
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=95.99 E-value=0.0042 Score=45.13 Aligned_cols=64 Identities=13% Similarity=0.138 Sum_probs=40.5
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHC-CCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEE
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSR-GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 87 (281)
..||.|.| +|++|+..++.|.+. +.+++++..+..+... ...+. ...+...+.+++|+|+.
T Consensus 3 kirvgiiG-~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~----------~~~~~-------~~~~~~~~~~~~D~Vvi 64 (170)
T d1f06a1 3 NIRVAIVG-YGNLGRSVEKLIAKQPDMDLVGIFSRRATLDT----------KTPVF-------DVADVDKHADDVDVLFL 64 (170)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHTTCSSEEEEEEEESSSCCSS----------SSCEE-------EGGGGGGTTTTCSEEEE
T ss_pred cceEEEEC-ChHHHHHHHHHHHhCCCcEEEEEEeccccccc----------ccccc-------cchhhhhhccccceEEE
Confidence 55799999 699999999999876 5787766544332211 01111 11234445568899987
Q ss_pred ecc
Q 023515 88 TAS 90 (281)
Q Consensus 88 ~a~ 90 (281)
+..
T Consensus 65 ~tp 67 (170)
T d1f06a1 65 CMG 67 (170)
T ss_dssp CSC
T ss_pred eCC
Confidence 753
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=95.86 E-value=0.0074 Score=40.92 Aligned_cols=36 Identities=22% Similarity=0.171 Sum_probs=32.6
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN 44 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (281)
.+++++|.|| |+||-.++..|.+.|.+|+++.|.+.
T Consensus 21 ~~~~vvVvGg-G~ig~E~A~~l~~~g~~vt~i~~~~~ 56 (121)
T d1mo9a2 21 PGSTVVVVGG-SKTAVEYGCFFNATGRRTVMLVRTEP 56 (121)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcchhheEeeccch
Confidence 4689999995 99999999999999999999999764
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=95.85 E-value=0.0088 Score=46.12 Aligned_cols=42 Identities=17% Similarity=0.090 Sum_probs=33.5
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchh
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKT 49 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~ 49 (281)
++.++|+|.| .|.+|++++..|+..|. +++++|.+.-+...+
T Consensus 28 L~~~~VliiG-~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL 70 (247)
T d1jw9b_ 28 LKDSRVLIVG-LGGLGCAASQYLASAGVGNLTLLDFDTVSLSNL 70 (247)
T ss_dssp HHHCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGG
T ss_pred HhCCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCcccchhhh
Confidence 4578999999 58899999999999995 788888765444433
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.84 E-value=0.0089 Score=43.21 Aligned_cols=82 Identities=17% Similarity=0.029 Sum_probs=52.0
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCC--CCcCcHHHHhcCCc
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL--LEEGSFDSIVDGCD 83 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~--~~~~~~~~~~~~~d 83 (281)
.+++|+++|.|-|.-+|+.++..|+++|..|+.+............ .. .-......|+ ...+.+++....+|
T Consensus 26 ~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~lk~~~~~aD 99 (171)
T d1edza1 26 RLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGE----SL--KLNKHHVEDLGEYSEDLLKKCSLDSD 99 (171)
T ss_dssp TTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCC----CS--SCCCCEEEEEEECCHHHHHHHHHHCS
T ss_pred CCCCCEEEEECCccccHHHHHHHHHHCCCEEEEecccccccccccc----ce--eeeeeccccccccchhHHhhccccCC
Confidence 4679999999999999999999999999999877644211100000 00 0000111222 12344677777899
Q ss_pred EeEEecccCC
Q 023515 84 GVCHTASPFY 93 (281)
Q Consensus 84 ~Vih~a~~~~ 93 (281)
+||..+|...
T Consensus 100 IvIsavG~p~ 109 (171)
T d1edza1 100 VVITGVPSEN 109 (171)
T ss_dssp EEEECCCCTT
T ss_pred EEEEccCCCc
Confidence 9998887543
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=95.83 E-value=0.0054 Score=49.26 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=33.5
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCc
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP 46 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~ 46 (281)
++|+|+|.|| |.-|...|..|.++|++|+++.++..-.
T Consensus 1 k~KKI~IIGa-G~sGL~aA~~L~k~G~~V~viEk~~~iG 38 (314)
T d2bi7a1 1 KSKKILIVGA-GFSGAVIGRQLAEKGHQVHIIDQRDHIG 38 (314)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSSSSS
T ss_pred CCCEEEEECC-cHHHHHHHHHHHhCCCCEEEEECCCCCc
Confidence 4789999995 9999999999999999999999877543
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.82 E-value=0.0063 Score=41.52 Aligned_cols=33 Identities=30% Similarity=0.320 Sum_probs=30.2
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRD 42 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~ 42 (281)
.++++|.|| |+||-.++..|.+.|.+|+++.|+
T Consensus 20 P~~vvIIGg-G~iG~E~A~~l~~lG~~Vtii~~~ 52 (122)
T d1h6va2 20 PGKTLVVGA-SYVALECAGFLAGIGLDVTVMVRS 52 (122)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCeEEEECC-CccHHHHHHHHhhcCCeEEEEEec
Confidence 468999996 999999999999999999999875
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=95.78 E-value=0.025 Score=36.58 Aligned_cols=71 Identities=17% Similarity=0.222 Sum_probs=46.7
Q ss_pred CCCeEEEeCCchHHH-HHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 8 AGKVVCVTGASGYIA-SWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 8 ~~~~ilItGatG~iG-~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
..++|.+.|- |++| ++||+.|+++|++|.+.|+.... ....+.+ .++.+..++-. +.++++|.||
T Consensus 7 ~~~~ihfiGi-gG~GMs~LA~~L~~~G~~VsGSD~~~~~--~~~~L~~-----~Gi~v~~g~~~------~~i~~~d~vV 72 (96)
T d1p3da1 7 RVQQIHFIGI-GGAGMSGIAEILLNEGYQISGSDIADGV--VTQRLAQ-----AGAKIYIGHAE------EHIEGASVVV 72 (96)
T ss_dssp TCCEEEEETT-TSTTHHHHHHHHHHHTCEEEEEESCCSH--HHHHHHH-----TTCEEEESCCG------GGGTTCSEEE
T ss_pred hCCEEEEEEE-CHHHHHHHHHHHHhCCCEEEEEeCCCCh--hhhHHHH-----CCCeEEECCcc------ccCCCCCEEE
Confidence 4788999985 4455 77899999999999999987532 2222221 24555444332 2245789998
Q ss_pred EecccC
Q 023515 87 HTASPF 92 (281)
Q Consensus 87 h~a~~~ 92 (281)
...|..
T Consensus 73 ~S~AI~ 78 (96)
T d1p3da1 73 VSSAIK 78 (96)
T ss_dssp ECTTSC
T ss_pred ECCCcC
Confidence 877653
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.76 E-value=0.0036 Score=52.48 Aligned_cols=79 Identities=15% Similarity=0.070 Sum_probs=53.8
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCCcchhhhhh--h-----------------ccCCCCcEEEEEc
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLL--A-----------------LDGASERLQLFKA 67 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~--~-----------------~~~~~~~~~~~~~ 67 (281)
...||||.|+ |++|.++++.|+..|. +++++|.+.-....+.+.. . ......+++.+..
T Consensus 36 ~~~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 114 (426)
T d1yovb1 36 DTCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFN 114 (426)
T ss_dssp HHCCEEEECS-STTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEECS
T ss_pred hcCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeeec
Confidence 4678999997 7799999999999995 7888888654433332211 0 0011235667777
Q ss_pred CCCCcCcHHHHhcCCcEeEEec
Q 023515 68 NLLEEGSFDSIVDGCDGVCHTA 89 (281)
Q Consensus 68 D~~~~~~~~~~~~~~d~Vih~a 89 (281)
++.+.. ...+++.|+||.+.
T Consensus 115 ~i~~~~--~~~~~~~DlVi~~~ 134 (426)
T d1yovb1 115 KIQDFN--DTFYRQFHIIVCGL 134 (426)
T ss_dssp CGGGBC--HHHHTTCSEEEECC
T ss_pred cccchH--HHHHHhcchheecc
Confidence 776543 46788999999764
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=95.76 E-value=0.029 Score=35.69 Aligned_cols=69 Identities=20% Similarity=0.118 Sum_probs=44.5
Q ss_pred CeEEEeCCchHHH-HHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeEEe
Q 023515 10 KVVCVTGASGYIA-SWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (281)
Q Consensus 10 ~~ilItGatG~iG-~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~ 88 (281)
|+|.+.|- |++| ++||+.|+++|+.|.+.|+.... .+.++.. .++++..+ .+++. ++++|.||..
T Consensus 2 ~~ihfiGI-gG~GMs~LA~~L~~~G~~VsGSD~~~~~--~t~~L~~-----~Gi~i~~g--h~~~~----i~~~d~vV~S 67 (89)
T d1j6ua1 2 MKIHFVGI-GGIGMSAVALHEFSNGNDVYGSNIEETE--RTAYLRK-----LGIPIFVP--HSADN----WYDPDLVIKT 67 (89)
T ss_dssp CEEEEETT-TSHHHHHHHHHHHHTTCEEEEECSSCCH--HHHHHHH-----TTCCEESS--CCTTS----CCCCSEEEEC
T ss_pred cEEEEEeE-CHHHHHHHHHHHHhCCCeEEEEeCCCCh--hHHHHHH-----CCCeEEee--ecccc----cCCCCEEEEe
Confidence 57888886 4444 47899999999999999987532 2233322 24555443 22222 3578999988
Q ss_pred cccC
Q 023515 89 ASPF 92 (281)
Q Consensus 89 a~~~ 92 (281)
.|..
T Consensus 68 sAI~ 71 (89)
T d1j6ua1 68 PAVR 71 (89)
T ss_dssp TTCC
T ss_pred cCcC
Confidence 7764
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=95.69 E-value=0.0055 Score=44.47 Aligned_cols=72 Identities=18% Similarity=0.173 Sum_probs=45.7
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-----C
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-----G 81 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-----~ 81 (281)
.+.+|+|.|+ |.+|...+..+...| ..|+++++++.+.+..++.. ..+++ |.. .+.++...+ +
T Consensus 32 ~g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~g-------a~~~i--~~~-~~~~~~~~~~~~~~g 100 (172)
T d1h2ba2 32 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLG-------ADHVV--DAR-RDPVKQVMELTRGRG 100 (172)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTT-------CSEEE--ETT-SCHHHHHHHHTTTCC
T ss_pred CCCEEEEeCC-ChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcc-------cceee--cCc-ccHHHHHHHhhCCCC
Confidence 4678999985 999999999888878 46777777765444433321 11222 222 233343332 5
Q ss_pred CcEeEEecc
Q 023515 82 CDGVCHTAS 90 (281)
Q Consensus 82 ~d~Vih~a~ 90 (281)
+|+||.+++
T Consensus 101 ~d~vid~~g 109 (172)
T d1h2ba2 101 VNVAMDFVG 109 (172)
T ss_dssp EEEEEESSC
T ss_pred ceEEEEecC
Confidence 899999876
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=95.67 E-value=0.0013 Score=47.97 Aligned_cols=116 Identities=16% Similarity=0.042 Sum_probs=65.9
Q ss_pred CCeEEEeCCchHHHHH--HHHHHHHC----CCEEEEEEcCCCCcchhhhhhhcc--CCCCcEEEEEcCCCCcCcHHHHhc
Q 023515 9 GKVVCVTGASGYIASW--LVKLLLSR----GYTVKASVRDPNDPKKTRHLLALD--GASERLQLFKANLLEEGSFDSIVD 80 (281)
Q Consensus 9 ~~~ilItGatG~iG~~--l~~~L~~~----g~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~ 80 (281)
.+||.|.|| |.+|.. ++..|+.. +.+++++++++++.+......... ...... .+....+.+++++
T Consensus 2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~-----~i~~~td~~eaL~ 75 (171)
T d1obba1 2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADL-----KFEKTMNLDDVII 75 (171)
T ss_dssp CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCC-----EEEEESCHHHHHT
T ss_pred CcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCe-----EEEEeCChhhccc
Confidence 458999996 888864 34445543 469999999876544322211110 000111 2233345778889
Q ss_pred CCcEeEEecccCCCC------------------C--------CCccchhhhhHHHHHHHHHHHhhhCCCccEEEEec
Q 023515 81 GCDGVCHTASPFYHD------------------A--------KDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131 (281)
Q Consensus 81 ~~d~Vih~a~~~~~~------------------~--------~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S 131 (281)
++|+||+.++..... . ...+ ....-|+.-.+.+++..++..+...++++|
T Consensus 76 dad~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~-~~~~rn~~i~~~i~~~i~~~~p~a~~i~~T 151 (171)
T d1obba1 76 DADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYT-FSNYNQLKYFVDIARKIEKLSPKAWYLQAA 151 (171)
T ss_dssp TCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCS-SSCHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred CCCeEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcce-eeecchHHHHHHHHHHHHHHCcCeEEEEEC
Confidence 999999987531100 0 0000 112348888888888888873334455444
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.66 E-value=0.0054 Score=41.92 Aligned_cols=36 Identities=25% Similarity=0.178 Sum_probs=32.6
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND 45 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 45 (281)
.++++|.|| |+||-.++..|.+.|.+|+++.|.+.-
T Consensus 25 p~~~viiG~-G~iglE~A~~~~~~G~~Vtvi~~~~~~ 60 (123)
T d1dxla2 25 PKKLVVIGA-GYIGLEMGSVWGRIGSEVTVVEFASEI 60 (123)
T ss_dssp CSEEEESCC-SHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred CCeEEEEcc-chHHHHHHHHHHhcCCeEEEEEEcccc
Confidence 578999995 999999999999999999999997754
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=95.64 E-value=0.0095 Score=36.89 Aligned_cols=36 Identities=28% Similarity=0.254 Sum_probs=31.5
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND 45 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 45 (281)
||+|.|.|+ |-+|+-++..-..-|++|++++-.+..
T Consensus 1 ~k~vgIlG~-GQLgrMl~~Aa~~LG~~v~vldp~~~~ 36 (78)
T d3etja2 1 MKQVCVLGN-GQLGRMLRQAGEPLGIAVWPVGLDAEP 36 (78)
T ss_dssp CEEEEEEBC-SHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred CCEEEEEcC-CHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence 578999995 999999999999999999999876543
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=95.62 E-value=0.013 Score=41.71 Aligned_cols=67 Identities=21% Similarity=0.229 Sum_probs=50.4
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
+.+|+++|.| -|.+|+.+++.|...|.+|+++..+|-. .++... |-.....++++++..|++|
T Consensus 21 laGk~vvV~G-YG~vGrG~A~~~rg~Ga~V~V~E~DPi~--alqA~m--------------dGf~v~~~~~a~~~aDi~v 83 (163)
T d1v8ba1 21 ISGKIVVICG-YGDVGKGCASSMKGLGARVYITEIDPIC--AIQAVM--------------EGFNVVTLDEIVDKGDFFI 83 (163)
T ss_dssp CTTSEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSCHHH--HHHHHT--------------TTCEECCHHHHTTTCSEEE
T ss_pred ecCCEEEEec-ccccchhHHHHHHhCCCEEEEEecCchh--hHHHHh--------------cCCccCchhHccccCcEEE
Confidence 5689999999 7999999999999999999999887632 222221 2222345677888888888
Q ss_pred Eecc
Q 023515 87 HTAS 90 (281)
Q Consensus 87 h~a~ 90 (281)
...|
T Consensus 84 TaTG 87 (163)
T d1v8ba1 84 TCTG 87 (163)
T ss_dssp ECCS
T ss_pred EcCC
Confidence 8765
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.54 E-value=0.04 Score=38.24 Aligned_cols=87 Identities=23% Similarity=0.108 Sum_probs=57.2
Q ss_pred CCCeEEEeCCc---hHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcE
Q 023515 8 AGKVVCVTGAS---GYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (281)
Q Consensus 8 ~~~~ilItGat---G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~ 84 (281)
+.++|.|.|+| +..|..+++.|.+.||+|+.+.-+.. +. ....-..++.++-..+|.
T Consensus 18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~--~i------------------~G~~~~~sl~dlp~~iD~ 77 (139)
T d2d59a1 18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYE--EV------------------LGRKCYPSVLDIPDKIEV 77 (139)
T ss_dssp HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCS--EE------------------TTEECBSSGGGCSSCCSE
T ss_pred cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccc--cc------------------CCCcccccccccCccceE
Confidence 46899999998 78999999999999999887753321 11 111223445555556788
Q ss_pred eEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEecc
Q 023515 85 VCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (281)
Q Consensus 85 Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS 132 (281)
|+-+.. -..+..+++.|.+. +++.+++.++
T Consensus 78 v~i~vp-----------------~~~~~~~~~e~~~~-g~k~v~~~~G 107 (139)
T d2d59a1 78 VDLFVK-----------------PKLTMEYVEQAIKK-GAKVVWFQYN 107 (139)
T ss_dssp EEECSC-----------------HHHHHHHHHHHHHH-TCSEEEECTT
T ss_pred EEEEeC-----------------HHHHHHHHHHHHHh-CCCEEEEecc
Confidence 765431 12445677778876 7776655443
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.52 E-value=0.0058 Score=43.31 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=32.2
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcC
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRD 42 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~ 42 (281)
.+++|+|||.|| |.+|..-++.|++.|.+|++++-.
T Consensus 10 ~l~gkrvLViGg-G~va~~ka~~Ll~~GA~VtVvap~ 45 (150)
T d1kyqa1 10 QLKDKRILLIGG-GEVGLTRLYKLMPTGCKLTLVSPD 45 (150)
T ss_dssp CCTTCEEEEEEE-SHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred eeCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCC
Confidence 357999999997 999999999999999999999653
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.41 E-value=0.0079 Score=44.22 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=32.0
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCCC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPND 45 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~ 45 (281)
++||+|.|| |..|-..+.+|.++|+ +|+++.|.+.-
T Consensus 4 ~~kVaIIGa-GpaGl~aA~~l~~~G~~~V~v~E~~~~~ 40 (196)
T d1gtea4 4 SAKIALLGA-GPASISCASFLARLGYSDITIFEKQEYV 40 (196)
T ss_dssp GCCEEEECC-SHHHHHHHHHHHHTTCCCEEEEESSSSC
T ss_pred CCEEEEECC-hHHHHHHHHHHHHCCCCeEEEEEecCcc
Confidence 689999996 9999999999999998 59999987643
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=95.41 E-value=0.012 Score=43.00 Aligned_cols=38 Identities=21% Similarity=0.096 Sum_probs=33.8
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND 45 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 45 (281)
.+.|+|+|.|| |..|-..+..|.++||+|+++.+.+.-
T Consensus 41 ~~~k~V~IIGa-GPAGL~AA~~la~~G~~Vtl~E~~~~~ 78 (179)
T d1ps9a3 41 VQKKNLAVVGA-GPAGLAFAINAAARGHQVTLFDAHSEI 78 (179)
T ss_dssp SSCCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred CCCcEEEEECc-cHHHHHHHHHHHhhccceEEEeccCcc
Confidence 35789999995 999999999999999999999997643
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=95.40 E-value=0.007 Score=47.16 Aligned_cols=31 Identities=19% Similarity=0.170 Sum_probs=29.2
Q ss_pred EEEeCCchHHHHHHHHHHHHCCCEEEEEEcCC
Q 023515 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDP 43 (281)
Q Consensus 12 ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 43 (281)
|+|.|| |.+|..++.+|+++|++|+++++..
T Consensus 7 vvIIGa-Gi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 7 AVVIGG-GIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp EEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred EEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 999995 9999999999999999999999865
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.32 E-value=0.0088 Score=51.55 Aligned_cols=108 Identities=11% Similarity=0.038 Sum_probs=63.5
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhh--------------------hhccCCCCcEEEE
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHL--------------------LALDGASERLQLF 65 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~--------------------~~~~~~~~~~~~~ 65 (281)
+...+|+|.|+ |.+|.++++.|+..| -+++++|.+.-....+.+. .++.. ..+++.+
T Consensus 23 L~~s~VlvvG~-gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp-~v~i~~~ 100 (529)
T d1yova1 23 LESAHVCLINA-TATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNS-DVSGSFV 100 (529)
T ss_dssp HHHCEEEECCC-SHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCT-TSBCCEE
T ss_pred HhCCCEEEECC-CHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCC-CCcEEEE
Confidence 45679999996 779999999999999 4788887654333322221 11110 1233444
Q ss_pred EcCCCCc-CcHHHHhcCCcEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccce
Q 023515 66 KANLLEE-GSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMA 134 (281)
Q Consensus 66 ~~D~~~~-~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~ 134 (281)
..++.+. +.-...+++.|+||.+. .|...-..+-+.|.+. ++ .+|+.+|.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~dvVv~~~----------------~~~~~~~~l~~~c~~~-~i-p~i~~~~~G 152 (529)
T d1yova1 101 EESPENLLDNDPSFFCRFTVVVATQ----------------LPESTSLRLADVLWNS-QI-PLLICRTYG 152 (529)
T ss_dssp SSCHHHHHHSCGGGGGGCSEEEEES----------------CCHHHHHHHHHHHHHH-TC-CEEEEEEET
T ss_pred cCCchhhhhhHHHHhcCCCEEEECC----------------CCHHHHHHHHHHHHHc-CC-CEEEEeccC
Confidence 4333221 11123455788888653 1233445677888886 55 488777643
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=95.30 E-value=0.0099 Score=40.66 Aligned_cols=35 Identities=11% Similarity=0.070 Sum_probs=31.9
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN 44 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (281)
.++++|.|| |+||-.++..|.+.|.+|+++.+.+.
T Consensus 26 p~~vvIiGg-G~IG~E~A~~~~~~G~~Vtive~~~~ 60 (125)
T d1ojta2 26 PGKLLIIGG-GIIGLEMGTVYSTLGSRLDVVEMMDG 60 (125)
T ss_dssp CSEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CCeEEEECC-CHHHHHHHHHhhcCCCEEEEEEeecc
Confidence 578999995 99999999999999999999988764
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=95.26 E-value=0.0098 Score=42.02 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=29.3
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRG--YTVKASVRD 42 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~ 42 (281)
||+|.|.|+||-||...++-+.+.. ++|.++.=.
T Consensus 1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~ 36 (151)
T d1q0qa2 1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAG 36 (151)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEES
T ss_pred CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEec
Confidence 6789999999999999999998873 788888653
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.10 E-value=0.0085 Score=43.06 Aligned_cols=41 Identities=20% Similarity=0.184 Sum_probs=33.7
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchh
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKT 49 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~ 49 (281)
++.+|+|.|+ |.||...+..+...|.+|+++++++.+....
T Consensus 27 ~g~~vlv~G~-G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~ 67 (168)
T d1rjwa2 27 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLELA 67 (168)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred CCCEEEEeec-ccchhhhhHHHhcCCCeEeccCCCHHHhhhh
Confidence 4678999975 8899999999989999999998877655443
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=95.09 E-value=0.0017 Score=47.15 Aligned_cols=77 Identities=12% Similarity=0.076 Sum_probs=43.6
Q ss_pred CCeEEEeCCchHHHHH-HHHHHHHC-----CCEEEEEEcCCCCcchhhhhhhcc--CCCCcEEEEEcCCCCcCcHHHHhc
Q 023515 9 GKVVCVTGASGYIASW-LVKLLLSR-----GYTVKASVRDPNDPKKTRHLLALD--GASERLQLFKANLLEEGSFDSIVD 80 (281)
Q Consensus 9 ~~~ilItGatG~iG~~-l~~~L~~~-----g~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~ 80 (281)
..||.|.|| |.+|.. ++..|+.+ +.++++++.++++.+......... ........ ....+..++++
T Consensus 3 ~~KI~iIGa-Gsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~d~~eal~ 76 (167)
T d1u8xx1 3 SFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEF-----AATTDPEEAFT 76 (167)
T ss_dssp CEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEE-----EEESCHHHHHS
T ss_pred CceEEEECC-ChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcce-----EecCChhhccC
Confidence 457999998 445543 44555543 248999998876544222211110 00011222 11235678889
Q ss_pred CCcEeEEeccc
Q 023515 81 GCDGVCHTASP 91 (281)
Q Consensus 81 ~~d~Vih~a~~ 91 (281)
++|+||..|+.
T Consensus 77 ~AD~Vvitag~ 87 (167)
T d1u8xx1 77 DVDFVMAHIRV 87 (167)
T ss_dssp SCSEEEECCCT
T ss_pred CCCEEEECCCc
Confidence 99999999986
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=95.03 E-value=0.032 Score=40.22 Aligned_cols=73 Identities=19% Similarity=0.190 Sum_probs=45.4
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcC-cHHHHh-----c
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEG-SFDSIV-----D 80 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~-----~ 80 (281)
++.+|+|.|+ |.+|...+..+...| .+|+++++++++.+...++ +++.+. |..+.+ ..++.. .
T Consensus 28 ~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~--------GAd~~i-n~~~~~~~~~~~~~~~~~~ 97 (175)
T d1cdoa2 28 PGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF--------GATDFV-NPNDHSEPISQVLSKMTNG 97 (175)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT--------TCCEEE-CGGGCSSCHHHHHHHHHTS
T ss_pred CCCEEEEEec-CCccchHHHHHHHHhhchheeecchHHHHHHHHHc--------CCcEEE-cCCCcchhHHHHHHhhccC
Confidence 4678999997 557777777777776 5788888887665554333 122211 333222 222322 2
Q ss_pred CCcEeEEecc
Q 023515 81 GCDGVCHTAS 90 (281)
Q Consensus 81 ~~d~Vih~a~ 90 (281)
++|++|.+.|
T Consensus 98 G~d~vid~~G 107 (175)
T d1cdoa2 98 GVDFSLECVG 107 (175)
T ss_dssp CBSEEEECSC
T ss_pred CcceeeeecC
Confidence 6999999876
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=94.99 E-value=0.016 Score=44.54 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=31.9
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN 44 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (281)
.+||+|.|| |..|..++..|.++|++|+++.|++.
T Consensus 4 ~~kV~IiGa-G~aGl~~A~~L~~~G~~v~v~Er~~~ 38 (265)
T d2voua1 4 TDRIAVVGG-SISGLTAALMLRDAGVDVDVYERSPQ 38 (265)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCcEEEECc-CHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 578999996 99999999999999999999998654
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=94.89 E-value=0.014 Score=45.67 Aligned_cols=35 Identities=26% Similarity=0.179 Sum_probs=31.4
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN 44 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (281)
+|||+|.|| |.-|-..+.+|.++|++|+++.+++.
T Consensus 1 ~KkV~IIGa-G~aGL~aA~~La~~G~~V~vlE~~~~ 35 (373)
T d1seza1 1 AKRVAVIGA-GVSGLAAAYKLKIHGLNVTVFEAEGK 35 (373)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHTTSCEEEEECSSSS
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 478999995 99999999999999999999987653
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=94.81 E-value=0.016 Score=41.67 Aligned_cols=34 Identities=21% Similarity=0.190 Sum_probs=29.8
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDP 43 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~ 43 (281)
+|||+|.|| |++|-.++..|.+.+ .+|+++.+++
T Consensus 2 gkrivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 2 GRKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CCcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 799999996 999999999999987 4788887765
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=94.81 E-value=0.014 Score=41.09 Aligned_cols=35 Identities=29% Similarity=0.349 Sum_probs=29.9
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHC--CCEEEEEEcCC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSR--GYTVKASVRDP 43 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~--g~~V~~~~r~~ 43 (281)
+|+|.|.|+||-||...++-+.+. .++|.++.=..
T Consensus 2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~ 38 (150)
T d1r0ka2 2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANR 38 (150)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESS
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCC
Confidence 689999999999999999999876 48888886543
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=94.76 E-value=0.015 Score=44.11 Aligned_cols=38 Identities=26% Similarity=0.297 Sum_probs=33.4
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN 44 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (281)
++++++|+|-| .|.+|+++++.|.+.|.+|++.+.+..
T Consensus 36 ~l~g~~v~IqG-~GnVG~~~a~~L~~~Gakvv~~d~~~~ 73 (230)
T d1leha1 36 SLEGLAVSVQG-LGNVAKALCKKLNTEGAKLVVTDVNKA 73 (230)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEeecccHH
Confidence 36799999999 699999999999999999998876543
|
| >d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Phosphopantothenoylcysteine synthetase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.73 E-value=0.058 Score=42.38 Aligned_cols=28 Identities=25% Similarity=0.245 Sum_probs=24.7
Q ss_pred chHHHHHHHHHHHHCCCEEEEEEcCCCC
Q 023515 18 SGYIASWLVKLLLSRGYTVKASVRDPND 45 (281)
Q Consensus 18 tG~iG~~l~~~L~~~g~~V~~~~r~~~~ 45 (281)
||..|.+|+++|+.+|++|+.+.+...-
T Consensus 45 SGk~G~alA~~~~~~Ga~V~li~g~~s~ 72 (290)
T d1p9oa_ 45 SGRRGATSAEAFLAAGYGVLFLYRARSA 72 (290)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEEEETTSC
T ss_pred chHHHHHHHHHHHHcCCEEEEEecCCcc
Confidence 5899999999999999999999876543
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=94.60 E-value=0.018 Score=41.74 Aligned_cols=81 Identities=14% Similarity=0.138 Sum_probs=46.8
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhhhhccCC-----CCc-EEEEEcCCCCcCcHHHHhcC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGA-----SER-LQLFKANLLEEGSFDSIVDG 81 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~-----~~~-~~~~~~D~~~~~~~~~~~~~ 81 (281)
.+||.|-| .|.||+.+++.|.++. .+|+.+....+.. ....+...... ... ..+....+.....+..+.++
T Consensus 2 ~irIaING-fGRIGR~v~Ral~~~~dieiVaINd~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (172)
T d2czca2 2 KVKVGVNG-YGTIGKRVAYAVTKQDDMELIGITKTKPDF-EAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEK 79 (172)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEEESSCSH-HHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTT
T ss_pred cEEEEEEC-CCHHHHHHHHHHHhCCCceEEEEecCCChH-HHHHhhhcCceeecccccceeeecccCccccchhhhhhcc
Confidence 45899999 6999999999998875 6777765432221 11111111000 000 01111112233457777789
Q ss_pred CcEeEEeccc
Q 023515 82 CDGVCHTASP 91 (281)
Q Consensus 82 ~d~Vih~a~~ 91 (281)
+|+||-|.|.
T Consensus 80 vDvViEcTG~ 89 (172)
T d2czca2 80 VDIIVDATPG 89 (172)
T ss_dssp CSEEEECCST
T ss_pred CCEEEECCCC
Confidence 9999999875
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=94.55 E-value=0.071 Score=35.65 Aligned_cols=71 Identities=20% Similarity=0.170 Sum_probs=47.2
Q ss_pred CCeEEEeCCch----------HHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHH
Q 023515 9 GKVVCVTGASG----------YIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI 78 (281)
Q Consensus 9 ~~~ilItGatG----------~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 78 (281)
.++|||.|+.. +.+.+.++.|.+.|++++.+.-++.....-... .+++ ...-...+.+.++
T Consensus 4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTVstd~d~------aD~l---Yfeplt~e~v~~I 74 (121)
T d1a9xa4 4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDT------SDRL---YFEPVTLEDVLEI 74 (121)
T ss_dssp SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSSTTSTTS------SSEE---ECCCCSHHHHHHH
T ss_pred CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhhhcChhh------cCce---EEccCCHHHHHHH
Confidence 67899999843 889999999999999999998887654320000 0112 2222334556666
Q ss_pred hc--CCcEeEEe
Q 023515 79 VD--GCDGVCHT 88 (281)
Q Consensus 79 ~~--~~d~Vih~ 88 (281)
++ ++|.|+-.
T Consensus 75 i~~E~p~~ii~~ 86 (121)
T d1a9xa4 75 VRIEKPKGVIVQ 86 (121)
T ss_dssp HHHHCCSEEECS
T ss_pred HHHhCCCEEEee
Confidence 54 78887643
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=94.53 E-value=0.047 Score=36.99 Aligned_cols=72 Identities=19% Similarity=0.172 Sum_probs=49.8
Q ss_pred CCCeEEEeCCc----------hHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHH
Q 023515 8 AGKVVCVTGAS----------GYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDS 77 (281)
Q Consensus 8 ~~~~ilItGat----------G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 77 (281)
..++|||.|+. -+.+.+.++.|.+.|++++.+.-++.....-.. -..-+...-...+.+.+
T Consensus 6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TVstd~d---------~aD~lYfePlt~e~v~~ 76 (127)
T d1a9xa3 6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTDPE---------MADATYIEPIHWEVVRK 76 (127)
T ss_dssp SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGGCGG---------GSSEEECSCCCHHHHHH
T ss_pred CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhhhcChh---------hcceeeeecCCHHHHHH
Confidence 36899999983 488999999999999999999888865433111 01112233344566777
Q ss_pred Hhc--CCcEeEEe
Q 023515 78 IVD--GCDGVCHT 88 (281)
Q Consensus 78 ~~~--~~d~Vih~ 88 (281)
+++ ++|.|+-.
T Consensus 77 Ii~~E~pd~il~~ 89 (127)
T d1a9xa3 77 IIEKERPDAVLPT 89 (127)
T ss_dssp HHHHHCCSEEECS
T ss_pred HHHHhCcCCeEEE
Confidence 765 88998754
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=94.50 E-value=0.019 Score=37.92 Aligned_cols=38 Identities=21% Similarity=0.036 Sum_probs=31.7
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN 44 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (281)
.+++|+|+|.|+ |.-|..++.+|.....+|+...|+..
T Consensus 29 ~f~gK~VlVVG~-g~Sa~dia~~l~~~ak~v~~~~~r~~ 66 (107)
T d2gv8a2 29 LFVGESVLVVGG-ASSANDLVRHLTPVAKHPIYQSLLGG 66 (107)
T ss_dssp GGTTCCEEEECS-SHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred hcCCCeEEEECC-CCCHHHHHHHHHHhcCEEEEEEecCc
Confidence 467999999995 89999999999988877777766654
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.23 E-value=0.011 Score=43.75 Aligned_cols=35 Identities=31% Similarity=0.287 Sum_probs=28.7
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCc
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP 46 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~ 46 (281)
|||.|.| .|++|..++..| ++|++|+++|-++...
T Consensus 1 MkI~ViG-lG~vGl~~a~~~-a~g~~V~g~Din~~~v 35 (196)
T d1dlja2 1 MKIAVAG-SGYVGLSLGVLL-SLQNEVTIVDILPSKV 35 (196)
T ss_dssp CEEEEEC-CSHHHHHHHHHH-TTTSEEEEECSCHHHH
T ss_pred CEEEEEC-CChhHHHHHHHH-HCCCcEEEEECCHHHH
Confidence 5799997 799999998655 6799999999876443
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=94.18 E-value=0.02 Score=44.66 Aligned_cols=34 Identities=24% Similarity=0.176 Sum_probs=30.6
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN 44 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (281)
|+|+|.|| |.-|...+..|.++|++|+++.+++.
T Consensus 1 m~V~IIGa-G~aGL~aA~~L~~~G~~V~vlE~~~~ 34 (347)
T d2ivda1 1 MNVAVVGG-GISGLAVAHHLRSRGTDAVLLESSAR 34 (347)
T ss_dssp CCEEEECC-BHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 46999996 99999999999999999999988653
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.16 E-value=0.015 Score=46.05 Aligned_cols=37 Identities=11% Similarity=-0.029 Sum_probs=32.0
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCc
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP 46 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~ 46 (281)
|..|+|.|| |.-|..+|+.|.+.|++|+++.+++.-.
T Consensus 1 M~dv~IIGa-G~sGl~~A~~L~~~g~~V~iiEk~~~iG 37 (298)
T d1i8ta1 1 MYDYIIVGS-GLFGAVCANELKKLNKKVLVIEKRNHIG 37 (298)
T ss_dssp CEEEEEECC-SHHHHHHHHHHGGGTCCEEEECSSSSSS
T ss_pred CccEEEECC-cHHHHHHHHHHHhCCCcEEEEECCCCcc
Confidence 347999995 9999999999999999999998876543
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=94.16 E-value=0.17 Score=34.78 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=29.9
Q ss_pred CCCeEEEeCCc---hHHHHHHHHHHHHCCCEEEEEEcC
Q 023515 8 AGKVVCVTGAS---GYIASWLVKLLLSRGYTVKASVRD 42 (281)
Q Consensus 8 ~~~~ilItGat---G~iG~~l~~~L~~~g~~V~~~~r~ 42 (281)
..|+|.|.|+| +..|..+++.|.+.||++..+.-+
T Consensus 12 ~pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~ 49 (136)
T d1iuka_ 12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPR 49 (136)
T ss_dssp HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGG
T ss_pred CCCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEec
Confidence 46889999997 679999999999999998877543
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=94.11 E-value=0.02 Score=41.43 Aligned_cols=81 Identities=21% Similarity=0.254 Sum_probs=46.0
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhhhhccCC-----CCcE-EEEEcCCCCcCcHHHHhcC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGA-----SERL-QLFKANLLEEGSFDSIVDG 81 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~-~~~~~D~~~~~~~~~~~~~ 81 (281)
|++|.|-| .|.||+.++|.|.+++ .+|+.+....+.... ..+...... .... .+-...+.-...+..+.++
T Consensus 1 M~~VgING-fGRIGR~v~R~l~~~~di~vvaInd~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~ 78 (171)
T d1cf2o1 1 MKAVAING-YGTVGKRVADAIAQQDDMKVIGVSKTRPDFEA-RMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDE 78 (171)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTSSSEEEEEEEESSCSHHH-HHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHT
T ss_pred CeEEEEEc-CcHHHHHHHHHHHhCCCceEEEEecCCcHHHH-HHHHhcCCceEecccccceeecccCcccCCChhHhhcC
Confidence 56899998 7999999999998886 577776543322211 111111100 0000 0000112112345666779
Q ss_pred CcEeEEeccc
Q 023515 82 CDGVCHTASP 91 (281)
Q Consensus 82 ~d~Vih~a~~ 91 (281)
+|+||-|.|.
T Consensus 79 vDvViEcTG~ 88 (171)
T d1cf2o1 79 ADIVIDCTPE 88 (171)
T ss_dssp CSEEEECCST
T ss_pred CCEEEEccCC
Confidence 9999999875
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=93.99 E-value=0.033 Score=40.20 Aligned_cols=34 Identities=15% Similarity=0.165 Sum_probs=29.0
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDP 43 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 43 (281)
+++|+|.|| |++|-.++..|.+.|.+|.++.+.+
T Consensus 3 ~~~VvIIGg-G~~G~e~A~~l~~~g~~v~v~~~~~ 36 (185)
T d1q1ra1 3 NDNVVIVGT-GLAGVEVAFGLRASGWEGNIRLVGD 36 (185)
T ss_dssp SCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred CCCEEEECC-cHHHHHHHHHHHHcCCceEEEEecC
Confidence 678999995 9999999999999998877665554
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.98 E-value=0.014 Score=42.22 Aligned_cols=117 Identities=10% Similarity=-0.024 Sum_probs=60.6
Q ss_pred CeEEEeCC-chHHHHHHHHHHHHCC----CEEEEEEcCCCC--cchhhhhhhc--cCCCCcEEEEEcCCCCcCcHHHHhc
Q 023515 10 KVVCVTGA-SGYIASWLVKLLLSRG----YTVKASVRDPND--PKKTRHLLAL--DGASERLQLFKANLLEEGSFDSIVD 80 (281)
Q Consensus 10 ~~ilItGa-tG~iG~~l~~~L~~~g----~~V~~~~r~~~~--~~~~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~ 80 (281)
+||.|.|| +.+.+..++..++... .+++.++.++.. .+.+...... .....+.. +....+..+.++
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~-----~~~~td~~~al~ 76 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIE-----IHLTLDRRRALD 76 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCE-----EEEESCHHHHHT
T ss_pred cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCce-----eeecCCchhhcC
Confidence 47889996 3455555555555432 488888877643 2222211110 00001111 122344567788
Q ss_pred CCcEeEEecccCCCCC-CCc-----------------c-chhhhhHHHHHHHHHHHhhhCCCccEEEEec
Q 023515 81 GCDGVCHTASPFYHDA-KDP-----------------Q-VELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131 (281)
Q Consensus 81 ~~d~Vih~a~~~~~~~-~~~-----------------~-~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S 131 (281)
++|+||..|+...... ... . .....-|+.-.+.+++...++.+...++.+|
T Consensus 77 gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vt 146 (169)
T d1s6ya1 77 GADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFT 146 (169)
T ss_dssp TCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred CCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeC
Confidence 9999999997532110 000 0 0112347777788888888873433444443
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=93.91 E-value=0.033 Score=44.68 Aligned_cols=36 Identities=22% Similarity=0.163 Sum_probs=31.4
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCC--CEEEEEEcCCC
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPN 44 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~ 44 (281)
.+|+|+|.|| |.-|-..+..|+++| ++|+++.|+..
T Consensus 3 ~~KrVaIIGa-G~sGl~~A~~L~~~~~~~~v~vfEk~~~ 40 (335)
T d2gv8a1 3 TIRKIAIIGA-GPSGLVTAKALLAEKAFDQVTLFERRGS 40 (335)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred CCCeEEEECc-CHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 3789999996 999999999999876 69999999864
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=93.90 E-value=0.041 Score=41.65 Aligned_cols=37 Identities=27% Similarity=0.332 Sum_probs=33.1
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND 45 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 45 (281)
..++|+|.|| |..|-..+.+|.++|++|+++.+...-
T Consensus 48 ~~k~VvIIGa-GpAGl~aA~~l~~~G~~v~l~E~~~~~ 84 (233)
T d1djqa3 48 NKDSVLIVGA-GPSGSEAARVLMESGYTVHLTDTAEKI 84 (233)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred CCceEEEEcc-cHHHHHHHHHHHHhccceeeEeecccc
Confidence 4789999996 999999999999999999999887643
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=93.68 E-value=0.032 Score=44.19 Aligned_cols=36 Identities=22% Similarity=0.191 Sum_probs=32.1
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN 44 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (281)
..|+|+|.|| |..|-..+..|.++|++|+++.+.+.
T Consensus 29 ~pkkV~IIGa-G~aGLsaA~~L~~~G~~V~vlE~~~~ 64 (370)
T d2iida1 29 NPKHVVIVGA-GMAGLSAAYVLAGAGHQVTVLEASER 64 (370)
T ss_dssp SCCEEEEECC-BHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 3578999995 99999999999999999999988653
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=93.51 E-value=0.055 Score=36.77 Aligned_cols=91 Identities=10% Similarity=0.047 Sum_probs=55.6
Q ss_pred CeEEEeCCchHHHHHHHHHHHH-CCCEEEEEEcCCC-CcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-CCcEeE
Q 023515 10 KVVCVTGASGYIASWLVKLLLS-RGYTVKASVRDPN-DPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-GCDGVC 86 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~-~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-~~d~Vi 86 (281)
.+|+|.|| |.+|++|++++.. .+++++++..+.. +... .. .++... +.+.+.++.+ .++.++
T Consensus 4 ~~v~I~Ga-G~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~--~I-------~Gi~V~-----~~~~l~~~~~~~i~iai 68 (126)
T d2dt5a2 4 WGLCIVGM-GRLGSALADYPGFGESFELRGFFDVDPEKVGR--PV-------RGGVIE-----HVDLLPQRVPGRIEIAL 68 (126)
T ss_dssp EEEEEECC-SHHHHHHHHCSCCCSSEEEEEEEESCTTTTTC--EE-------TTEEEE-----EGGGHHHHSTTTCCEEE
T ss_pred ceEEEEcC-CHHHHHHHHhHhhcCCcEEEEEEeCchHhcCC--EE-------CCEEEe-----cHHHHHHHHhhcccEEE
Confidence 47999995 9999999998754 3689888765433 2211 00 234432 2345666655 445444
Q ss_pred EecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccc
Q 023515 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (281)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (281)
-+.. + .....+++.|.+. +++.+..++..
T Consensus 69 ~~i~--~---------------~~~~~I~d~l~~~-gIk~I~~f~~~ 97 (126)
T d2dt5a2 69 LTVP--R---------------EAAQKAADLLVAA-GIKGILNFAPV 97 (126)
T ss_dssp ECSC--H---------------HHHHHHHHHHHHH-TCCEEEECSSS
T ss_pred EeCC--H---------------HHHHHHHHHHHHc-CCCEEeecCce
Confidence 3321 1 1224577788887 88888887664
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=93.34 E-value=0.038 Score=42.89 Aligned_cols=32 Identities=22% Similarity=0.037 Sum_probs=29.2
Q ss_pred eEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCC
Q 023515 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDP 43 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 43 (281)
-|+|.|| |.+|..++.+|.++|++|+++.+..
T Consensus 5 DvvIIGa-Gi~Gls~A~~La~~G~~V~viE~~~ 36 (281)
T d2gf3a1 5 DVIVVGA-GSMGMAAGYQLAKQGVKTLLVDAFD 36 (281)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CEEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 3899995 9999999999999999999999864
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=93.29 E-value=0.055 Score=38.09 Aligned_cols=36 Identities=22% Similarity=0.203 Sum_probs=30.1
Q ss_pred CCeEEEe-CCchHHHHHHHHHHHHCCCEEEEEEcCCC
Q 023515 9 GKVVCVT-GASGYIASWLVKLLLSRGYTVKASVRDPN 44 (281)
Q Consensus 9 ~~~ilIt-GatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (281)
++.++|. .++||||..++..|.+.|++|+++.+.+.
T Consensus 39 ~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~ 75 (156)
T d1djqa2 39 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL 75 (156)
T ss_dssp CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred CCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence 4566665 34699999999999999999999998764
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=93.28 E-value=0.043 Score=38.94 Aligned_cols=35 Identities=31% Similarity=0.335 Sum_probs=24.1
Q ss_pred CCeEEEeCCchHHHHHHH-HHHHHCC-CEEEEEE-cCCC
Q 023515 9 GKVVCVTGASGYIASWLV-KLLLSRG-YTVKASV-RDPN 44 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~-~~L~~~g-~~V~~~~-r~~~ 44 (281)
+.++.|.| +|.||+.+. +.|.... .+++.+. |+..
T Consensus 4 kirvaIIG-aG~ig~~~~~~~l~~~~~~el~avas~~~~ 41 (157)
T d1nvmb1 4 KLKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAA 41 (157)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTT
T ss_pred CcEEEEEc-CcHHHHHHHHHHHhhCCcceEEEEEecchh
Confidence 56899999 899999755 4444443 5777764 5543
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=93.18 E-value=0.059 Score=41.15 Aligned_cols=36 Identities=28% Similarity=0.392 Sum_probs=32.2
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcC
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRD 42 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~ 42 (281)
++++++|+|-| .|.+|+++++.|.+.|.+|++++..
T Consensus 28 ~l~g~~v~IqG-fGnVG~~~a~~L~~~Gakvv~vsD~ 63 (242)
T d1v9la1 28 GIEGKTVAIQG-MGNVGRWTAYWLEKMGAKVIAVSDI 63 (242)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEECS
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEeecc
Confidence 35789999999 7999999999999999999988754
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=93.17 E-value=0.042 Score=43.19 Aligned_cols=32 Identities=25% Similarity=0.548 Sum_probs=28.8
Q ss_pred eEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCC
Q 023515 11 VVCVTGASGYIASWLVKLLLSRGY-TVKASVRDP 43 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~ 43 (281)
+|+|.|| |.+|..++.+|+++|. +|++++|+.
T Consensus 3 dViIIGa-Gi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 3 RIVIIGA-GIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 6999996 9999999999999995 699999874
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.16 E-value=0.073 Score=41.63 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=32.0
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcC
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRD 42 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~ 42 (281)
.+++++|+|-| .|.+|+++++.|.+.|.+|++++-.
T Consensus 33 ~L~gktvaIqG-fGnVG~~~A~~L~e~Gakvv~vsD~ 68 (293)
T d1hwxa1 33 GFGDKTFAVQG-FGNVGLHSMRYLHRFGAKCVAVGES 68 (293)
T ss_dssp SSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEEcc
Confidence 35789999999 5999999999999999999988754
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.00 E-value=0.063 Score=42.46 Aligned_cols=36 Identities=19% Similarity=0.109 Sum_probs=31.6
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN 44 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (281)
+.+||+|.|| |.-|-..+.+|.++|++|+++-.+..
T Consensus 4 ~~~kViVIGa-G~aGL~aA~~L~~~G~~V~VlEa~~r 39 (449)
T d2dw4a2 4 KTGKVIIIGS-GVSGLAAARQLQSFGMDVTLLEARDR 39 (449)
T ss_dssp CCCEEEEECC-BHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCCcEEEECC-CHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 4568999995 99999999999999999999977553
|
| >d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=92.86 E-value=0.52 Score=33.42 Aligned_cols=42 Identities=33% Similarity=0.375 Sum_probs=32.3
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhh
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLL 53 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~ 53 (281)
+||.|-| -|.||+.+.|.|..++.+|+.+.-. ...+.+..++
T Consensus 1 ikigING-fGRIGR~~~R~l~~~~i~iv~INd~-~~~~~~ayLl 42 (168)
T d2g82a1 1 MKVGING-FGRIGRQVFRILHSRGVEVALINDL-TDNKTLAHLL 42 (168)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCCEEEEECS-SCHHHHHHHH
T ss_pred CEEEEEC-CcHHHHHHHHHHhcCCCEEEEECCC-cchhhhhhee
Confidence 4788888 7999999999999999998887653 3455554443
|
| >d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]
Probab=92.85 E-value=0.49 Score=33.56 Aligned_cols=42 Identities=17% Similarity=0.128 Sum_probs=32.5
Q ss_pred eEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhh
Q 023515 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLL 53 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~ 53 (281)
||.|-| -|.||+.+.|.+++++.+|+.+.-.....+.+..+.
T Consensus 2 kIgING-fGRIGR~~~R~~~~~~~~ivaINd~~~~~~~~~yLl 43 (169)
T d1dssg1 2 KIGING-FGRIGRLVLRAALEMGAQVVAVNDPFIALEYMVYMF 43 (169)
T ss_dssp CEEEEC-CSHHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHH
T ss_pred eEEEEC-CcHHHHHHHHHHHhCCCcEEEECCCCcCHHHHHHHH
Confidence 688888 899999999999999988888765444555554443
|
| >d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Trypanosoma cruzi [TaxId: 5693]
Probab=92.84 E-value=0.61 Score=33.76 Aligned_cols=45 Identities=22% Similarity=0.183 Sum_probs=32.3
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCC-----CEEEEEEcCCCCcchhhhhhh
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRG-----YTVKASVRDPNDPKKTRHLLA 54 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g-----~~V~~~~r~~~~~~~~~~~~~ 54 (281)
.++|.|-| -|.||+.+.|.+++++ .+|+.+.......+.+..+.+
T Consensus 2 ~ikigING-FGRIGR~vlR~~~~~~~~~~~i~iv~Ind~~~~~~~~ayLlk 51 (190)
T d1k3ta1 2 PIKVGING-FGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMR 51 (190)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHHTTCBTTTEEEEEEEESCCCHHHHHHHHH
T ss_pred CeEEEEEC-CChHHHHHHHHHHHcCCCCCCeEEEEEecCCCCHHHHHHHhh
Confidence 34899999 8999999999999874 356666555445555555443
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=92.82 E-value=0.062 Score=39.38 Aligned_cols=33 Identities=18% Similarity=0.017 Sum_probs=28.2
Q ss_pred CeEEEeCCchHHHHHHHHHHHHC--CCEEEEEEcCC
Q 023515 10 KVVCVTGASGYIASWLVKLLLSR--GYTVKASVRDP 43 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~--g~~V~~~~r~~ 43 (281)
|||+|.|| |++|-.++..|.+. +.+|+++.|.+
T Consensus 1 ~KVvIIGg-G~~G~e~A~~l~~~~~~~~V~v~~~~~ 35 (198)
T d1nhpa1 1 MKVIVLGS-SHGGYEAVEELLNLHPDAEIQWYEKGD 35 (198)
T ss_dssp CEEEEECS-SHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred CEEEEECC-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 57999996 89999999999886 46898888764
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.50 E-value=0.044 Score=42.70 Aligned_cols=32 Identities=28% Similarity=0.252 Sum_probs=29.9
Q ss_pred eEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCC
Q 023515 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDP 43 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 43 (281)
+|+|.|| |-.|..++..|.+.|++|+++.|++
T Consensus 4 ~V~IvGa-Gp~Gl~~A~~L~~~G~~v~vlE~~~ 35 (292)
T d1k0ia1 4 QVAIIGA-GPSGLLLGQLLHKAGIDNVILERQT 35 (292)
T ss_dssp SEEEECC-SHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred CEEEECc-CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 6999996 8999999999999999999999875
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.48 E-value=0.06 Score=40.39 Aligned_cols=33 Identities=27% Similarity=0.246 Sum_probs=30.0
Q ss_pred eEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC
Q 023515 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN 44 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (281)
-|+|.| +|..|...|..|.++|++|.++.+++.
T Consensus 7 DviViG-aG~~Gl~~A~~La~~G~~V~vlE~~~~ 39 (297)
T d2bcgg1 7 DVIVLG-TGITECILSGLLSVDGKKVLHIDKQDH 39 (297)
T ss_dssp SEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CEEEEC-cCHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence 489999 599999999999999999999998764
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=92.40 E-value=0.068 Score=41.09 Aligned_cols=36 Identities=25% Similarity=0.208 Sum_probs=31.9
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcC
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRD 42 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~ 42 (281)
.+++++|+|.| .|.+|+++++.|.+.|.+|+.++-.
T Consensus 33 ~l~g~~v~IQG-fGnVG~~~a~~L~e~GakvvavsD~ 68 (255)
T d1bgva1 33 TLVGKTVALAG-FGNVAWGAAKKLAELGAKAVTLSGP 68 (255)
T ss_dssp CSTTCEEEECC-SSHHHHHHHHHHHHHTCEEEEEEET
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEecC
Confidence 35789999999 6999999999999999999988653
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=92.29 E-value=0.0072 Score=43.46 Aligned_cols=74 Identities=19% Similarity=0.149 Sum_probs=42.7
Q ss_pred CeEEEeCCchHHHHHHHHH-HHH--C---CCEEEEEEcCCCCcchhhhhhh-ccCCCCcEEEEEcCCCCcCcHHHHhcCC
Q 023515 10 KVVCVTGASGYIASWLVKL-LLS--R---GYTVKASVRDPNDPKKTRHLLA-LDGASERLQLFKANLLEEGSFDSIVDGC 82 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~-L~~--~---g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 82 (281)
|||.|.|| |.+|...+-. |+. . ..++.+++.++++......... ... ....... ..+..+.++++
T Consensus 1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~--~~~~~~~-----t~~~~~~l~~a 72 (162)
T d1up7a1 1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVK--DRFKVLI-----SDTFEGAVVDA 72 (162)
T ss_dssp CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHT--TSSEEEE-----CSSHHHHHTTC
T ss_pred CEEEEECC-CHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhc--cCceEEE-----ecCcccccCCC
Confidence 57999998 5466555533 222 1 3689999987765443222111 111 1122211 13356778899
Q ss_pred cEeEEeccc
Q 023515 83 DGVCHTASP 91 (281)
Q Consensus 83 d~Vih~a~~ 91 (281)
|+||..|+.
T Consensus 73 DvVVita~~ 81 (162)
T d1up7a1 73 KYVIFQFRP 81 (162)
T ss_dssp SEEEECCCT
T ss_pred CEEEEeccc
Confidence 999999975
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=92.24 E-value=0.035 Score=40.19 Aligned_cols=32 Identities=28% Similarity=0.285 Sum_probs=26.0
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEc
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVR 41 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r 41 (281)
..+|+|.| +|++|-.++..|.+.|.+|.++.+
T Consensus 3 ~a~VvIIG-gG~~G~e~A~~l~~~g~~v~i~~~ 34 (183)
T d1d7ya1 3 KAPVVVLG-AGLASVSFVAELRQAGYQGLITVV 34 (183)
T ss_dssp CSSEEEEC-CSHHHHHHHHHHHHHTCCSCEEEE
T ss_pred CCCEEEEC-ccHHHHHHHHHHHhcCCceEEEEE
Confidence 45699999 499999999999999976655544
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=92.19 E-value=0.1 Score=34.68 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=29.3
Q ss_pred CCeEEEeCCchHHHHHHHHHHHH---CCCEEEEEEcCCC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLS---RGYTVKASVRDPN 44 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~---~g~~V~~~~r~~~ 44 (281)
.++++|.|| |++|-.++..|.+ .|.+|+++.|.+.
T Consensus 18 p~~v~IiGg-G~ig~E~A~~l~~~~~~g~~Vtli~~~~~ 55 (117)
T d1feca2 18 PKRALCVGG-GYISIEFAGIFNAYKARGGQVDLAYRGDM 55 (117)
T ss_dssp CSEEEEECS-SHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred CCeEEEECC-ChHHHHHHHHhHhhcccccccceeccccc
Confidence 578999996 9999999987654 4889999998764
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.12 E-value=0.011 Score=44.80 Aligned_cols=28 Identities=29% Similarity=0.166 Sum_probs=24.2
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEE
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKA 38 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~ 38 (281)
|+|+|.|| |-+|...+.+|+++|++|++
T Consensus 1 mkV~VIGa-Gi~GlstA~~L~~~G~~v~v 28 (246)
T d1kifa1 1 MRVVVIGA-GVIGLSTALCIHERYHSVLQ 28 (246)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHHTTTSS
T ss_pred CEEEEECc-hHHHHHHHHHHHHCCCCceE
Confidence 57999996 99999999999999976443
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=91.95 E-value=0.076 Score=40.19 Aligned_cols=34 Identities=24% Similarity=0.141 Sum_probs=29.8
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCCC
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPN 44 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~ 44 (281)
++|+|.|| |.-|...+..|.++|+ +|+++.+++.
T Consensus 1 P~V~IIGa-G~aGL~aA~~L~~~G~~~V~vlE~~~~ 35 (347)
T d1b5qa1 1 PRVIVVGA-GMSGISAAKRLSEAGITDLLILEATDH 35 (347)
T ss_dssp CCEEEECC-BHHHHHHHHHHHHTTCCCEEEECSSSS
T ss_pred CCEEEECC-cHHHHHHHHHHHhCCCCcEEEEECCCC
Confidence 36999995 9999999999999995 7999988654
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=91.93 E-value=0.095 Score=34.91 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=28.5
Q ss_pred CCeEEEeCCchHHHHHHHHHHHH---CCCEEEEEEcCCC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLS---RGYTVKASVRDPN 44 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~---~g~~V~~~~r~~~ 44 (281)
.++++|.|| |++|-.++..|.+ +|.+|+++.|.+.
T Consensus 20 p~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~~~ 57 (117)
T d1aoga2 20 PRRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRGEM 57 (117)
T ss_dssp CSEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESSSS
T ss_pred CCeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEeccch
Confidence 578999997 9999999976654 4578999988654
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=91.77 E-value=0.091 Score=37.10 Aligned_cols=31 Identities=29% Similarity=0.336 Sum_probs=26.7
Q ss_pred eEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCC
Q 023515 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDP 43 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 43 (281)
||+|.|| |++|-.++..|. ++.+|+++.|.+
T Consensus 2 rVvIIGg-G~~G~e~A~~l~-~~~~Vtvv~~~~ 32 (167)
T d1xhca1 2 KVVIVGN-GPGGFELAKQLS-QTYEVTVIDKEP 32 (167)
T ss_dssp EEEEECC-SHHHHHHHHHHT-TTSEEEEECSSS
T ss_pred eEEEECC-cHHHHHHHHHHH-cCCCEEEEeccc
Confidence 7999996 999999999985 578999998754
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=91.54 E-value=0.017 Score=40.82 Aligned_cols=78 Identities=10% Similarity=0.088 Sum_probs=40.4
Q ss_pred EEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCC-----CCcEEEEEcCCCCcCcHHHHhcC----C
Q 023515 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGA-----SERLQLFKANLLEEGSFDSIVDG----C 82 (281)
Q Consensus 12 ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~----~ 82 (281)
|-+.| +|.+|+++++.|.+.++.+.+.+|++++.+.+.+....... .....++..=+. ++.+.+++++ -
T Consensus 2 IgfIG-~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~-d~~i~~v~~~l~~~~ 79 (153)
T d2i76a2 2 LNFVG-TGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVP-DRYIKTVANHLNLGD 79 (153)
T ss_dssp CEEES-CCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSC-TTTHHHHHTTTCCSS
T ss_pred EEEEe-CcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEecc-chhhhHHHhhhcccc
Confidence 34566 79999999998855434345788887766665554321110 112223333332 2445555542 2
Q ss_pred cEeEEeccc
Q 023515 83 DGVCHTASP 91 (281)
Q Consensus 83 d~Vih~a~~ 91 (281)
.+|||+++.
T Consensus 80 ~ivi~~s~~ 88 (153)
T d2i76a2 80 AVLVHCSGF 88 (153)
T ss_dssp CCEEECCSS
T ss_pred eeeeecccc
Confidence 467777654
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.40 E-value=0.14 Score=39.16 Aligned_cols=34 Identities=18% Similarity=0.055 Sum_probs=30.1
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCC
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPN 44 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~ 44 (281)
.+|+|.|| |..|..++..|.+.| ++|+++.|++.
T Consensus 2 ~~V~IvGa-G~aGl~~A~~L~~~Gi~~V~V~Er~~~ 36 (288)
T d3c96a1 2 IDILIAGA-GIGGLSCALALHQAGIGKVTLLESSSE 36 (288)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 47999996 999999999999999 58999998764
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.28 E-value=0.12 Score=35.42 Aligned_cols=35 Identities=23% Similarity=0.255 Sum_probs=29.3
Q ss_pred CCeEEEeCCchHHHHHHHHHHHH----CCCEEEEEEcCCC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLS----RGYTVKASVRDPN 44 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~----~g~~V~~~~r~~~ 44 (281)
.++++|.|| |++|-.++..|.+ .|.+|+.+.+.+.
T Consensus 37 ~k~i~IvGg-G~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~ 75 (137)
T d1m6ia2 37 VKSITIIGG-GFLGSELACALGRKARALGTEVIQLFPEKG 75 (137)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CCEEEEECC-CHHHHHHHHHHHHHHHhcCCEEEEeccccc
Confidence 678999996 9999999998863 4899999988654
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=91.05 E-value=0.38 Score=34.42 Aligned_cols=77 Identities=14% Similarity=0.165 Sum_probs=46.5
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhcc-----------CCCCcEEEEEcCCCCcCcHH
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALD-----------GASERLQLFKANLLEEGSFD 76 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-----------~~~~~~~~~~~D~~~~~~~~ 76 (281)
++.+||..|+.- |+ .+..|+++|++|++++.++.-....++..+.. ......+++++|..+.....
T Consensus 20 ~~~rvLd~GCG~--G~-~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 96 (201)
T d1pjza_ 20 PGARVLVPLCGK--SQ-DMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD 96 (201)
T ss_dssp TTCEEEETTTCC--SH-HHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred CCCEEEEecCcC--CH-HHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccccc
Confidence 578999999733 23 55577788999999998864433332221110 01234678888887654322
Q ss_pred HHhcCCcEeEEec
Q 023515 77 SIVDGCDGVCHTA 89 (281)
Q Consensus 77 ~~~~~~d~Vih~a 89 (281)
....|.|+...
T Consensus 97 --~~~~D~i~~~~ 107 (201)
T d1pjza_ 97 --IGHCAAFYDRA 107 (201)
T ss_dssp --HHSEEEEEEES
T ss_pred --ccceeEEEEEe
Confidence 23467776543
|
| >d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=91.03 E-value=0.55 Score=29.44 Aligned_cols=31 Identities=19% Similarity=0.140 Sum_probs=25.5
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEc
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVR 41 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r 41 (281)
|||||.|+ |.=-.+|++.|.+..+++++.--
T Consensus 1 MkVLviGs-GgREHAia~~l~~s~~~v~~~pG 31 (90)
T d1vkza2 1 VRVHILGS-GGREHAIGWAFAKQGYEVHFYPG 31 (90)
T ss_dssp CEEEEEEC-SHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEECC-CHHHHHHHHHHhcCCCeEEEecC
Confidence 58999996 55589999999998888887743
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=90.92 E-value=0.68 Score=36.48 Aligned_cols=117 Identities=16% Similarity=0.112 Sum_probs=65.2
Q ss_pred cCCCeEEEeCC-chHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCc-CcHHHHhcCCcE
Q 023515 7 AAGKVVCVTGA-SGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEE-GSFDSIVDGCDG 84 (281)
Q Consensus 7 ~~~~~ilItGa-tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~d~ 84 (281)
.++++||=.++ +|..+-+++ ..+.+|+.++.++...+..++.....+. .+++++.+|..+. ..+...-+..|.
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a----~g~~~V~~vD~s~~al~~a~~n~~~ngl-~~~~~i~~d~~~~~~~~~~~~~~fD~ 218 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLA----LGFREVVAVDSSAEALRRAEENARLNGL-GNVRVLEANAFDLLRRLEKEGERFDL 218 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHH----HHEEEEEEEESCHHHHHHHHHHHHHTTC-TTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred hCCCeeeccCCCCcHHHHHHH----hcCCcEEeecchHHHHHHHHHHHHHcCC-CCcceeeccHHHHhhhhHhhhcCCCE
Confidence 35677776654 676665543 3467999999987655444333333222 4689999998653 222222346899
Q ss_pred eEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccc
Q 023515 85 VCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (281)
Q Consensus 85 Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (281)
||......... ... ...-...-..++..+.+..+.+-++.++|+
T Consensus 219 Vi~DpP~~~~~-~~~----~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc 262 (318)
T d1wxxa2 219 VVLDPPAFAKG-KKD----VERAYRAYKEVNLRAIKLLKEGGILATASC 262 (318)
T ss_dssp EEECCCCSCCS-TTS----HHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EEEcCCccccc-hHH----HHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 99875333221 111 122233445566666665343445555554
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=90.76 E-value=0.32 Score=33.93 Aligned_cols=36 Identities=19% Similarity=0.073 Sum_probs=28.0
Q ss_pred eEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcch
Q 023515 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKK 48 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~ 48 (281)
||.+.| .|.+|+.+++.|++.|+.| ...|..++...
T Consensus 2 kIg~IG-lG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~ 37 (156)
T d2cvza2 2 KVAFIG-LGAMGYPMAGHLARRFPTL-VWNRTFEKALR 37 (156)
T ss_dssp CEEEEC-CSTTHHHHHHHHHTTSCEE-EECSSTHHHHH
T ss_pred eEEEEe-HHHHHHHHHHHHHhCCCEE-EEeCCHHHHHH
Confidence 588888 5999999999999988865 46666554433
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=90.39 E-value=0.15 Score=40.17 Aligned_cols=34 Identities=24% Similarity=0.235 Sum_probs=30.8
Q ss_pred eEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC
Q 023515 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND 45 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 45 (281)
.|+|.|| |..|-.++.+|.++|.+|+++.+.+.-
T Consensus 9 dV~IIGA-G~sGl~~a~~L~~~G~~v~i~Ek~~~i 42 (298)
T d1w4xa1 9 DVLVVGA-GFSGLYALYRLRELGRSVHVIETAGDV 42 (298)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CEEEECc-cHHHHHHHHHHHhCCCCEEEEEcCCCc
Confidence 6999996 999999999999999999999987653
|
| >d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Polymyxin resistance protein ArnA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.35 E-value=0.18 Score=37.19 Aligned_cols=76 Identities=16% Similarity=0.177 Sum_probs=43.4
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcch------hhhhhhccCCCCcEEEEE-cCCCCcCcHHHHhc-C
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKK------TRHLLALDGASERLQLFK-ANLLEEGSFDSIVD-G 81 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~~~~~~~-~D~~~~~~~~~~~~-~ 81 (281)
|||++.|. +..|..+++.|++.|++|.++.-.+++... +.+.-.. .++.+.+ .++.+.+.++.+.+ +
T Consensus 1 Mkiv~~~~-~~~g~~~l~~L~~~g~~I~~Vvt~~~~~~~~~~~~~~~~~a~~----~~i~~~~~~~~~~~~~~~~i~~~~ 75 (203)
T d2blna2 1 MKTVVFAY-HDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAE----RGIPVYAPDNVNHPLWVERIAQLS 75 (203)
T ss_dssp CEEEEEEC-HHHHHHHHHHHHHTTCEEEEEECCCC------CCCCHHHHHHH----HTCCEECCSCCCSHHHHHHHHHTC
T ss_pred CeEEEEec-CHHHHHHHHHHHHCCCCEEEEEcCCCCCCcccccCHHHHHHHH----cCCcceecccccchhhhhhhhhhc
Confidence 46888875 557999999999999999876543322110 1111001 1344433 45555443433332 7
Q ss_pred CcEeEEecc
Q 023515 82 CDGVCHTAS 90 (281)
Q Consensus 82 ~d~Vih~a~ 90 (281)
+|++|...+
T Consensus 76 ~Dlii~~g~ 84 (203)
T d2blna2 76 PDVIFSFYY 84 (203)
T ss_dssp CSEEEEESC
T ss_pred ccceeeeec
Confidence 899887764
|
| >d1p3y1_ c.34.1.1 (1:) MrsD {Bacillus sp. hil-y85/54728 [TaxId: 69002]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD superfamily: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD family: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD domain: MrsD species: Bacillus sp. hil-y85/54728 [TaxId: 69002]
Probab=89.98 E-value=0.065 Score=38.97 Aligned_cols=38 Identities=16% Similarity=0.140 Sum_probs=25.0
Q ss_pred hhccCCCeEEEeCCchHHH----HHHHHHHHHCCCEEEEEEcC
Q 023515 4 VAAAAGKVVCVTGASGYIA----SWLVKLLLSRGYTVKASVRD 42 (281)
Q Consensus 4 ~~~~~~~~ilItGatG~iG----~~l~~~L~~~g~~V~~~~r~ 42 (281)
|+++++|+|+ .|.||.|+ ..+++.|.+.|++|.++.-.
T Consensus 1 ms~l~~KkIl-lgvTGsiaa~k~~~l~~~L~~~g~eV~vv~T~ 42 (183)
T d1p3y1_ 1 ISILKDKKLL-IGICGSISSVGISSYLLYFKSFFKEIRVVMTK 42 (183)
T ss_dssp CTTGGGCEEE-EEECSCGGGGGTHHHHHHHTTTSSEEEEEECH
T ss_pred CCCcCCCEEE-EEEeCHHHHHHHHHHHHHHHHCCCeEEEEEEc
Confidence 4456788865 34444443 46778888889998887643
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.78 E-value=0.17 Score=40.02 Aligned_cols=32 Identities=28% Similarity=0.268 Sum_probs=29.0
Q ss_pred EEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC
Q 023515 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPN 44 (281)
Q Consensus 12 ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (281)
|+|.|| |.-|-..+.+|.++|++|+++.++..
T Consensus 2 ViVIGa-G~aGL~aA~~L~~~G~~V~VlE~~~~ 33 (383)
T d2v5za1 2 VVVVGG-GISGMAAAKLLHDSGLNVVVLEARDR 33 (383)
T ss_dssp EEEECC-BHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred EEEECC-CHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 789995 99999999999999999999988653
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=89.59 E-value=0.16 Score=37.65 Aligned_cols=76 Identities=18% Similarity=0.194 Sum_probs=54.0
Q ss_pred CCCeEEEeCC-chHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 8 AGKVVCVTGA-SGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 8 ~~~~ilItGa-tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
++.+||=.|+ +|..-.++++.. ..| +|++++.++.....+.+..+. ..++.++.+|..++......+..+|+|+
T Consensus 56 pg~~VLDlGcG~G~~~~~la~~v-~~g-~V~gvDis~~~i~~a~~~a~~---~~ni~~i~~d~~~~~~~~~~~~~vd~v~ 130 (209)
T d1nt2a_ 56 GDERVLYLGAASGTTVSHLADIV-DEG-IIYAVEYSAKPFEKLLELVRE---RNNIIPLLFDASKPWKYSGIVEKVDLIY 130 (209)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHT-TTS-EEEEECCCHHHHHHHHHHHHH---CSSEEEECSCTTCGGGTTTTCCCEEEEE
T ss_pred CCCEEEEeCCcCCHHHHHHHHhc-cCC-eEEEEeCCHHHHHHHHHHhhc---cCCceEEEeeccCccccccccceEEEEE
Confidence 4689999998 666666666544 444 899999887654443332222 2589999999999887777777788888
Q ss_pred Ee
Q 023515 87 HT 88 (281)
Q Consensus 87 h~ 88 (281)
|.
T Consensus 131 ~~ 132 (209)
T d1nt2a_ 131 QD 132 (209)
T ss_dssp EC
T ss_pred ec
Confidence 75
|
| >d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=89.46 E-value=2.3 Score=29.83 Aligned_cols=42 Identities=21% Similarity=0.165 Sum_probs=30.3
Q ss_pred eEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhhh
Q 023515 11 VVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLL 53 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~ 53 (281)
||.|-| -|.||+.+.|.++++. .+|+.+.-.....+.+..+.
T Consensus 2 kigING-fGRIGR~v~R~~~~~~~~~iv~INd~~~d~~~~ayLl 44 (166)
T d2b4ro1 2 KLGING-FGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLL 44 (166)
T ss_dssp EEEEEC-CSHHHHHHHHHHHTCSSEEEEEEECTTCCHHHHHHHH
T ss_pred eEEEEC-CCHHHHHHHHHHhhCCCcEEEEECCCCCChHHhhhhh
Confidence 577887 7999999999999874 67777765444455555543
|
| >d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Peptidoglycan biosynthesis glycosyltransferase MurG domain: Peptidoglycan biosynthesis glycosyltransferase MurG species: Escherichia coli [TaxId: 562]
Probab=89.44 E-value=0.21 Score=39.50 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=23.9
Q ss_pred CeEEEeC-Cc-hHH--HHHHHHHHHHCCCEEEEEEcCC
Q 023515 10 KVVCVTG-AS-GYI--ASWLVKLLLSRGYTVKASVRDP 43 (281)
Q Consensus 10 ~~ilItG-at-G~i--G~~l~~~L~~~g~~V~~~~r~~ 43 (281)
|||+|++ || |.+ ..+|+++|.++||+|..++...
T Consensus 1 kkili~~~GtGGHv~~a~al~~~L~~~G~eV~~i~~~~ 38 (351)
T d1f0ka_ 1 KRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTAD 38 (351)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHTTTCEEEEEECTT
T ss_pred CEEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEEeCC
Confidence 5677765 44 333 3368899999999999887543
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=89.43 E-value=0.24 Score=37.21 Aligned_cols=78 Identities=14% Similarity=0.135 Sum_probs=55.8
Q ss_pred CCCeEEEeCC-chHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 8 AGKVVCVTGA-SGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 8 ~~~~ilItGa-tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
.+.+||=.|+ +|+.-.++++..-. +-.|++++.++.....+.... ....++..+..|..+++........+|+|+
T Consensus 73 pG~~VLDlGaGsG~~t~~la~~VG~-~G~V~aVD~s~~~l~~a~~~a---~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~ 148 (227)
T d1g8aa_ 73 PGKSVLYLGIASGTTASHVSDIVGW-EGKIFGIEFSPRVLRELVPIV---EERRNIVPILGDATKPEEYRALVPKVDVIF 148 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHH---SSCTTEEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred CCCEEEEeccCCCHHHHHHHHHhCC-CCEEEEEeCcHHHHHHHHHHH---HhcCCceEEEEECCCcccccccccceEEEE
Confidence 4789999987 78888888876523 358999998875444333222 223578889999998887777677889888
Q ss_pred Eec
Q 023515 87 HTA 89 (281)
Q Consensus 87 h~a 89 (281)
+..
T Consensus 149 ~d~ 151 (227)
T d1g8aa_ 149 EDV 151 (227)
T ss_dssp ECC
T ss_pred EEc
Confidence 753
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=89.42 E-value=0.27 Score=36.94 Aligned_cols=76 Identities=14% Similarity=0.121 Sum_probs=53.1
Q ss_pred CCCeEEEeCC-chHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 8 AGKVVCVTGA-SGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 8 ~~~~ilItGa-tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
.+.+||=.|+ +|+.-.++++.. . +-.|++++.++.-...+.. ......++.++.+|..++.........+|+++
T Consensus 74 pG~~VLDlGcGsG~~~~~la~~~-~-~g~V~aVDiS~~~i~~a~~---~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~ 148 (230)
T d1g8sa_ 74 RDSKILYLGASAGTTPSHVADIA-D-KGIVYAIEYAPRIMRELLD---ACAERENIIPILGDANKPQEYANIVEKVDVIY 148 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHHHHT-T-TSEEEEEESCHHHHHHHHH---HTTTCTTEEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred CCCEEEEeCEEcCHHHHHHHHhC-C-CCEEEEEeCcHHHHHHHHH---HHhhhcccceEEEeeccCcccccccceeEEee
Confidence 4789999998 888888888753 3 3599999988754333322 22223578889999998877666555666666
Q ss_pred Ee
Q 023515 87 HT 88 (281)
Q Consensus 87 h~ 88 (281)
+.
T Consensus 149 ~~ 150 (230)
T d1g8sa_ 149 ED 150 (230)
T ss_dssp EC
T ss_pred cc
Confidence 54
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=89.09 E-value=0.32 Score=33.97 Aligned_cols=34 Identities=29% Similarity=0.118 Sum_probs=29.0
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCC-EEEEEEcCC
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDP 43 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~ 43 (281)
+++|+|.|| |.+|.-.+..+++.|. .|+++.|+.
T Consensus 45 ~~kVvVIGG-GdtA~D~A~~a~r~GA~~V~vi~rr~ 79 (153)
T d1gtea3 45 RGAVIVLGA-GDTAFDCATSALRCGARRVFLVFRKG 79 (153)
T ss_dssp CSEEEEECS-SHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred CCEEEEECC-ChhHHHHHHHHHHcCCcceeEEEeCC
Confidence 568999985 9999999999999985 587887764
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=89.06 E-value=0.32 Score=36.77 Aligned_cols=35 Identities=26% Similarity=0.441 Sum_probs=30.1
Q ss_pred cCCCeEEEeCCchHHHHHHHHHHHHC-CCEEEEEEcC
Q 023515 7 AAGKVVCVTGASGYIASWLVKLLLSR-GYTVKASVRD 42 (281)
Q Consensus 7 ~~~~~ilItGatG~iG~~l~~~L~~~-g~~V~~~~r~ 42 (281)
+++++|+|-| .|.+|+++++.|.++ |..|+.+.-.
T Consensus 30 l~g~~v~IqG-fGnVG~~~a~~L~~~~G~kvv~vsD~ 65 (239)
T d1gtma1 30 LKGKTIAIQG-YGNAGYYLAKIMSEDFGMKVVAVSDS 65 (239)
T ss_dssp STTCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHhcCcceeecccc
Confidence 5789999999 599999999999875 8998887654
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=88.47 E-value=0.13 Score=39.76 Aligned_cols=36 Identities=19% Similarity=0.073 Sum_probs=30.9
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHC-CCEEEEEEcCCC
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSR-GYTVKASVRDPN 44 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~ 44 (281)
+..-|+|.|| |.-|...+.+|+++ |++|+++.+.+.
T Consensus 32 ~e~DViVIGa-GpaGL~aA~~LA~~~G~~V~vlE~~~~ 68 (278)
T d1rp0a1 32 AETDVVVVGA-GSAGLSAAYEISKNPNVQVAIIEQSVS 68 (278)
T ss_dssp TEEEEEEECC-SHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred cCCCEEEECC-CHHHHHHHHHHHHccCCeEEEEecCCC
Confidence 3445999997 99999999999875 999999998764
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=88.03 E-value=0.26 Score=37.05 Aligned_cols=34 Identities=18% Similarity=-0.020 Sum_probs=30.3
Q ss_pred eEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC
Q 023515 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND 45 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 45 (281)
-|+|.|| |-.|...+..|.++|++|+++.+.+..
T Consensus 4 DViIIGa-G~aGl~aA~~la~~G~~V~liEk~~~~ 37 (251)
T d2i0za1 4 DVIVIGG-GPSGLMAAIGAAEEGANVLLLDKGNKL 37 (251)
T ss_dssp SEEEECC-SHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CEEEECc-CHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 4899996 999999999999999999999987643
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=87.90 E-value=0.24 Score=39.68 Aligned_cols=30 Identities=23% Similarity=0.133 Sum_probs=27.9
Q ss_pred EEEeCCchHHHHHHHHHHHHCCCEEEEEEcC
Q 023515 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRD 42 (281)
Q Consensus 12 ilItGatG~iG~~l~~~L~~~g~~V~~~~r~ 42 (281)
|+|.| +|+-|..+|.+|.++|++|.++-+.
T Consensus 5 VIVVG-sG~aG~v~A~rLaeaG~~VlvLEaG 34 (367)
T d1n4wa1 5 AVVIG-TGYGAAVSALRLGEAGVQTLMLEMG 34 (367)
T ss_dssp EEEEC-CSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEeC-cCHHHHHHHHHHHHCcCeEEEEecC
Confidence 78999 6999999999999999999999884
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.69 E-value=1.3 Score=34.73 Aligned_cols=74 Identities=15% Similarity=0.130 Sum_probs=46.3
Q ss_pred cCCCeEEEeCC-chHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcE
Q 023515 7 AAGKVVCVTGA-SGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (281)
Q Consensus 7 ~~~~~ilItGa-tG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~ 84 (281)
.++++||-.|+ +|.+ ...+++.| .+|++++.++. .....+..+......+++++.+|+.+.+.- .+..|+
T Consensus 32 ~~~~~VLDiGcG~G~l----s~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~---~~~~D~ 103 (316)
T d1oria_ 32 FKDKVVLDVGSGTGIL----CMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVELP---VEKVDI 103 (316)
T ss_dssp HTTCEEEEETCTTSHH----HHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCCS---SSCEEE
T ss_pred CCcCEEEEEecCCcHH----HHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcccc---cceeEE
Confidence 36889999986 4443 34555667 68999997653 333222222333346799999999875421 236788
Q ss_pred eEEe
Q 023515 85 VCHT 88 (281)
Q Consensus 85 Vih~ 88 (281)
|+..
T Consensus 104 ivs~ 107 (316)
T d1oria_ 104 IISE 107 (316)
T ss_dssp EEEC
T ss_pred Eeee
Confidence 8764
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=87.56 E-value=0.26 Score=37.38 Aligned_cols=36 Identities=17% Similarity=0.080 Sum_probs=31.4
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCc
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP 46 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~ 46 (281)
..|+|.|| |-.|...+..|.++|.+|+++.+.+...
T Consensus 5 ~DViIIGa-G~aGl~aA~~la~~G~~V~vlEk~~~~G 40 (253)
T d2gqfa1 5 SENIIIGA-GAAGLFCAAQLAKLGKSVTVFDNGKKIG 40 (253)
T ss_dssp CSEEEECC-SHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred CcEEEECc-CHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 35999996 9999999999999999999999876543
|
| >d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Succinyl-CoA synthetase domains family: Succinyl-CoA synthetase domains domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=87.51 E-value=0.52 Score=33.08 Aligned_cols=32 Identities=19% Similarity=0.188 Sum_probs=27.4
Q ss_pred CCCeEEEeCCchHHHHHHHHHHHHCCCEEEEE
Q 023515 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKAS 39 (281)
Q Consensus 8 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~ 39 (281)
+++++.|.+.+|+.|.-++..+.+.|-++--+
T Consensus 2 ~G~rvaiit~sGG~~~l~aD~~~~~Gl~l~~l 33 (163)
T d2csua3 2 RGNKVAIMTNAGGPGVLTADELDKRGLKLATL 33 (163)
T ss_dssp SSSEEEEEESCHHHHHHHHHHHHTTTCEECCC
T ss_pred CCCeEEEEECChHHHHHHHHHHHHcCCccCCC
Confidence 47889999999999999999999989765444
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=87.50 E-value=0.19 Score=36.23 Aligned_cols=69 Identities=17% Similarity=0.211 Sum_probs=40.7
Q ss_pred CeEEEeCCchHHHHHHHHHHHHC-CCEEEEE-EcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc--CCcEe
Q 023515 10 KVVCVTGASGYIASWLVKLLLSR-GYTVKAS-VRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGV 85 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~-g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~V 85 (281)
.+|.|.| +|.+|+..++.|... +.+|+++ ++++++........... ....+ .++++++++ ++|+|
T Consensus 2 iki~iIG-~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~---~~~~~-------~~~~~~ll~~~~iD~v 70 (184)
T d1ydwa1 2 IRIGVMG-CADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYP---ESTKI-------HGSYESLLEDPEIDAL 70 (184)
T ss_dssp EEEEEES-CCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCC---TTCEE-------ESSHHHHHHCTTCCEE
T ss_pred eEEEEEc-CCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccc---cceee-------cCcHHHhhhcccccee
Confidence 4799999 589999999999876 5788866 44443332222211110 11111 245666664 68888
Q ss_pred EEec
Q 023515 86 CHTA 89 (281)
Q Consensus 86 ih~a 89 (281)
+-+.
T Consensus 71 ~I~t 74 (184)
T d1ydwa1 71 YVPL 74 (184)
T ss_dssp EECC
T ss_pred eecc
Confidence 8543
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.47 E-value=1.7 Score=33.78 Aligned_cols=74 Identities=18% Similarity=0.174 Sum_probs=46.2
Q ss_pred cCCCeEEEeCCc-hHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcE
Q 023515 7 AAGKVVCVTGAS-GYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (281)
Q Consensus 7 ~~~~~ilItGat-G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~ 84 (281)
.++++||-.|+. |.+ +..+++.| .+|++++.++.- ..............+++++.+|+.+...- .+.+|+
T Consensus 34 ~~~~~VLDiGcG~G~l----sl~aa~~Ga~~V~aid~s~~~-~~a~~~~~~~~~~~~i~~~~~~~~~l~~~---~~~~D~ 105 (311)
T d2fyta1 34 FKDKVVLDVGCGTGIL----SMFAAKAGAKKVLGVDQSEIL-YQAMDIIRLNKLEDTITLIKGKIEEVHLP---VEKVDV 105 (311)
T ss_dssp TTTCEEEEETCTTSHH----HHHHHHTTCSEEEEEESSTHH-HHHHHHHHHTTCTTTEEEEESCTTTSCCS---CSCEEE
T ss_pred CCcCEEEEECCCCCHH----HHHHHHcCCCEEEEEeCHHHH-HHHHHHHHHhCCCccceEEEeeHHHhcCc---cccceE
Confidence 468899999864 444 44455677 589999877532 22122222223346899999999875421 246799
Q ss_pred eEEe
Q 023515 85 VCHT 88 (281)
Q Consensus 85 Vih~ 88 (281)
|+..
T Consensus 106 Ivse 109 (311)
T d2fyta1 106 IISE 109 (311)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 8864
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=87.35 E-value=0.4 Score=36.08 Aligned_cols=36 Identities=22% Similarity=0.265 Sum_probs=30.5
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHH-CCCEEEEEEcC
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLS-RGYTVKASVRD 42 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~-~g~~V~~~~r~ 42 (281)
.+++++|+|-| .|.+|+++++.|.+ .|..|+.++-.
T Consensus 28 ~l~g~~vaIqG-~GnVG~~~a~~L~~e~Ga~vv~vsd~ 64 (234)
T d1b26a1 28 DPKKATVAVQG-FGNVGQFAALLISQELGSKVVAVSDS 64 (234)
T ss_dssp CTTTCEEEEEC-CSHHHHHHHHHHHHHHCCEEEEEEET
T ss_pred CcCCCEEEEEC-CCHHHHHHHHHHHHhcCCceEEeecC
Confidence 35789999998 79999999999975 59999887643
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=86.98 E-value=0.79 Score=32.03 Aligned_cols=65 Identities=20% Similarity=0.262 Sum_probs=39.3
Q ss_pred CeEEEeCCchHHHHH-HHHHHHHC-CCEEEEEE-cCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 10 KVVCVTGASGYIASW-LVKLLLSR-GYTVKASV-RDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 10 ~~ilItGatG~iG~~-l~~~L~~~-g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
++|.|.| +|.+|+. .+..|... +.++++++ +++++........ ++ +. .+.++++++++|+|+
T Consensus 2 iri~iIG-~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~-------~~-----~~--~~~~~~l~~~~D~V~ 66 (164)
T d1tlta1 2 LRIGVVG-LGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESW-------RI-----PY--ADSLSSLAASCDAVF 66 (164)
T ss_dssp EEEEEEC-CSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHH-------TC-----CB--CSSHHHHHTTCSEEE
T ss_pred CEEEEEc-CCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcc-------cc-----cc--cccchhhhhhccccc
Confidence 4799999 5899975 46666554 57877665 5554443332211 11 12 234666778899987
Q ss_pred Eec
Q 023515 87 HTA 89 (281)
Q Consensus 87 h~a 89 (281)
-+.
T Consensus 67 I~t 69 (164)
T d1tlta1 67 VHS 69 (164)
T ss_dssp ECS
T ss_pred ccc
Confidence 553
|
| >d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Escherichia coli [TaxId: 562]
Probab=86.60 E-value=3.8 Score=28.62 Aligned_cols=41 Identities=20% Similarity=0.168 Sum_probs=31.0
Q ss_pred eEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhhh
Q 023515 11 VVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLL 53 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~ 53 (281)
+|.|-| -|.||+.+.|.++++. .+|+.+.- ....+.+..++
T Consensus 3 kigING-FGRIGR~v~R~~~~~~~i~ivaINd-~~~~~~~ayLl 44 (166)
T d1gado1 3 KVGING-FGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYML 44 (166)
T ss_dssp EEEEEC-CSHHHHHHHHHHHTCSSEEEEEEEC-SSCHHHHHHHH
T ss_pred EEEEEC-CcHHHHHHHHHHhhCCCeEEEEEeC-CCCHHHHhhhh
Confidence 688998 8999999999999886 67777764 33555555544
|
| >d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Methionyl-tRNAfmet formyltransferase species: Escherichia coli [TaxId: 562]
Probab=86.29 E-value=0.91 Score=33.15 Aligned_cols=81 Identities=20% Similarity=0.228 Sum_probs=44.4
Q ss_pred CCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhh-----hccCCCCcEEEEEcCCCCcCcHHHHhc--C
Q 023515 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLL-----ALDGASERLQLFKANLLEEGSFDSIVD--G 81 (281)
Q Consensus 9 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~~~~~~D~~~~~~~~~~~~--~ 81 (281)
.|||++.| ++..+..+++.|++.|++|.++.-.+++........ .......++........+.+...+.++ +
T Consensus 3 ~mKI~f~G-~~~~~~~~L~~L~~~~~~i~~Vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (206)
T d1fmta2 3 SLRIIFAG-TPDFAARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQPVSLRPQENQQLVAELQ 81 (206)
T ss_dssp CCEEEEEE-CSHHHHHHHHHHHHTTCEEEEEECCCCBC------CBCCHHHHHHHHTTCCEECCSCSCSHHHHHHHHHTT
T ss_pred CcEEEEEC-CCHHHHHHHHHHHhCCCCEEEEEeCCCcccccCccccccchhhhhhccCccccccccccchhhHHHHhhhc
Confidence 45788887 577899999999999999877664432211100000 000001234444444444444455554 6
Q ss_pred CcEeEEecc
Q 023515 82 CDGVCHTAS 90 (281)
Q Consensus 82 ~d~Vih~a~ 90 (281)
+|++|-..+
T Consensus 82 ~d~~v~~~~ 90 (206)
T d1fmta2 82 ADVMVVVAY 90 (206)
T ss_dssp CSEEEEESC
T ss_pred ceEEEeecc
Confidence 787776554
|
| >d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Glycogen synthase 1, GlgA species: Pyrococcus abyssi [TaxId: 29292]
Probab=85.57 E-value=0.52 Score=38.24 Aligned_cols=32 Identities=25% Similarity=0.157 Sum_probs=23.7
Q ss_pred CeEEEeCC------chHHH---HHHHHHHHHCCCEEEEEEc
Q 023515 10 KVVCVTGA------SGYIA---SWLVKLLLSRGYTVKASVR 41 (281)
Q Consensus 10 ~~ilItGa------tG~iG---~~l~~~L~~~g~~V~~~~r 41 (281)
||||+.+. +|++| .+|++.|.++||+|+++..
T Consensus 1 MkIl~~~~~~pP~~~GG~~~~~~~La~~L~~~Gh~V~Vvtp 41 (437)
T d2bisa1 1 MKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTP 41 (437)
T ss_dssp CEEEEECSCCTTCCSSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CEEEEECCccCCcccCCHHHHHHHHHHHHHHcCCEEEEEec
Confidence 46777543 35555 6679999999999999864
|
| >d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: 10-formyltetrahydrofolate dehydrogenase domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.33 E-value=0.82 Score=33.41 Aligned_cols=32 Identities=16% Similarity=0.093 Sum_probs=26.8
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcC
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRD 42 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~ 42 (281)
|||++.| ++..|..+++.|+++|++|.++.-.
T Consensus 1 MkI~~~G-~~~~~~~~l~~L~~~~~~i~~V~t~ 32 (203)
T d2bw0a2 1 MKIAVIG-QSLFGQEVYCHLRKEGHEVVGVFTV 32 (203)
T ss_dssp CEEEEEC-CHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CEEEEEc-CCHHHHHHHHHHHHCCCcEEEEEcC
Confidence 5788888 5678999999999999999877643
|
| >d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Human(Homo sapiens), liver isoform [TaxId: 9606]
Probab=85.28 E-value=2.4 Score=29.84 Aligned_cols=43 Identities=19% Similarity=0.139 Sum_probs=31.7
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhhh
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLL 53 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~ 53 (281)
-||.|-| -|.||+.+.|.+++++ .+|+.+.-.....+.+..+.
T Consensus 2 ikIgING-FGRIGR~v~R~~~~~~~~~ivaINd~~~~~~~~ayLl 45 (169)
T d1u8fo1 2 VKVGVNG-FGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMF 45 (169)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHH
T ss_pred cEEEEEC-CcHHHHHHHHHHHHCCCcEEEEecCCCccHHHHHHHH
Confidence 3789998 8999999999999775 78877765444445454444
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=84.96 E-value=0.26 Score=37.76 Aligned_cols=35 Identities=29% Similarity=0.287 Sum_probs=28.6
Q ss_pred CCeEEEeCCchHHHHH-----HHHHHHHCCCEEEEEEcCCC
Q 023515 9 GKVVCVTGASGYIASW-----LVKLLLSRGYTVKASVRDPN 44 (281)
Q Consensus 9 ~~~ilItGatG~iG~~-----l~~~L~~~g~~V~~~~r~~~ 44 (281)
|++|.|+| =|++|+. |+..|++.|++|.++|-+++
T Consensus 1 mr~Iai~g-KGGvGKTT~a~nLA~~LA~~G~rVllID~D~q 40 (269)
T d1cp2a_ 1 MRQVAIYG-KGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPK 40 (269)
T ss_dssp CEEEEEEE-CTTSSHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred CCEEEEEC-CCcCCHHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 57899998 7888865 45588888999999999875
|
| >d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=84.79 E-value=4.8 Score=28.16 Aligned_cols=41 Identities=29% Similarity=0.387 Sum_probs=29.6
Q ss_pred eEEEeCCchHHHHHHHHHHHHC---CCEEEEEEcCCCCcchhhhhh
Q 023515 11 VVCVTGASGYIASWLVKLLLSR---GYTVKASVRDPNDPKKTRHLL 53 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~---g~~V~~~~r~~~~~~~~~~~~ 53 (281)
||.|-| -|.||+.+.|+++++ +.+|+.+.-. ...+.+..+.
T Consensus 2 kIgING-fGRIGR~v~R~~~~~~~~~i~vvaINd~-~~~e~~ayLl 45 (169)
T d1hdgo1 2 RVAING-FGRIGRLVYRIIYERKNPDIEVVAINDL-TDTKTLAHLL 45 (169)
T ss_dssp EEEEEC-CSHHHHHHHHHHHHHTCTTCEEEEEECS-SCHHHHHHHH
T ss_pred EEEEEC-CChHHHHHHHHHHhccCCCEEEEEeccC-ccHHHHHHHH
Confidence 688888 899999999999974 3677777543 3455555444
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=84.60 E-value=0.42 Score=37.68 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=29.0
Q ss_pred eEEEeCCchHHHHHHHHHHH-----HCCCEEEEEEcCCCC
Q 023515 11 VVCVTGASGYIASWLVKLLL-----SRGYTVKASVRDPND 45 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~-----~~g~~V~~~~r~~~~ 45 (281)
-|+|.|| |-.|..++..|. ++|++|+++.|++..
T Consensus 9 DV~IvGa-G~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~ 47 (360)
T d1pn0a1 9 DVLIVGA-GPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK 47 (360)
T ss_dssp EEEEECC-SHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred CEEEECc-CHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence 4899996 999999999996 469999999987643
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=84.53 E-value=0.47 Score=36.89 Aligned_cols=33 Identities=21% Similarity=0.123 Sum_probs=29.6
Q ss_pred eEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCC
Q 023515 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN 44 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (281)
-|+|.|| |..|...+.+|.++|.+|+++.+.+.
T Consensus 18 DVlVIG~-G~aGl~aA~~la~~G~~V~lvEK~~~ 50 (308)
T d1y0pa2 18 DVVVVGS-GGAGFSAAISATDSGAKVILIEKEPV 50 (308)
T ss_dssp SEEEECC-SHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CEEEECc-CHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 4999995 99999999999999999999988653
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.47 E-value=0.5 Score=34.98 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=29.3
Q ss_pred CeEEEeCCchHHHHHHHHHHHHC--CCEEEEEEcCCC
Q 023515 10 KVVCVTGASGYIASWLVKLLLSR--GYTVKASVRDPN 44 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~--g~~V~~~~r~~~ 44 (281)
++|.|.|| |--|...+++|.+. |++|+++.+.+.
T Consensus 2 ~kv~iIGa-GpaGl~aA~~L~~~~~~~~V~v~e~~~~ 37 (230)
T d1cjca2 2 PQICVVGS-GPAGFYTAQHLLKHHSRAHVDIYEKQLV 37 (230)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred CeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 48999995 99999999999875 789999988764
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=83.92 E-value=0.38 Score=35.73 Aligned_cols=35 Identities=26% Similarity=0.285 Sum_probs=28.5
Q ss_pred CCeEEEeCCchHHHHH-----HHHHHHHCCCEEEEEEcCC
Q 023515 9 GKVVCVTGASGYIASW-----LVKLLLSRGYTVKASVRDP 43 (281)
Q Consensus 9 ~~~ilItGatG~iG~~-----l~~~L~~~g~~V~~~~r~~ 43 (281)
+|.|.|+|+-|++|+. |+..|.++|++|.+++-+.
T Consensus 2 ~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D~ 41 (237)
T d1g3qa_ 2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL 41 (237)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 5679999999988874 5667778999999998653
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=83.39 E-value=0.63 Score=34.27 Aligned_cols=39 Identities=18% Similarity=0.165 Sum_probs=33.9
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCC
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND 45 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 45 (281)
.+++|+|+|.| +|--|..++.+|.+.+.+++.+.|+...
T Consensus 29 ~~~gK~V~VvG-~G~Sa~dia~~~~~~~~~~~~~~~~~~~ 67 (235)
T d1w4xa2 29 DFSGQRVGVIG-TGSSGIQVSPQIAKQAAELFVFQRTPHF 67 (235)
T ss_dssp CCBTCEEEEEC-CSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred CCCCCEEEEEC-CCccHHHHHHHHHhhhccccccccccce
Confidence 35799999999 5889999999999999999998887643
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=83.38 E-value=0.49 Score=37.87 Aligned_cols=31 Identities=23% Similarity=0.178 Sum_probs=28.0
Q ss_pred eEEEeCCchHHHHHHHHHHHHCCCEEEEEEcC
Q 023515 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRD 42 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~ 42 (281)
-++|.| +|+-|..++.+|.+.|++|+++-+.
T Consensus 9 dvIVVG-sG~aG~v~A~rLaeaG~~VlvLEaG 39 (370)
T d3coxa1 9 PALVIG-SGYGGAVAALRLTQAGIPTQIVEMG 39 (370)
T ss_dssp EEEEEC-CSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CEEEEC-cCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 388999 5999999999999999999999874
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=83.35 E-value=0.38 Score=35.66 Aligned_cols=37 Identities=19% Similarity=0.064 Sum_probs=29.8
Q ss_pred CCeEEEeCCchHHHH-----HHHHHHHHCCCEEEEEEcCCCC
Q 023515 9 GKVVCVTGASGYIAS-----WLVKLLLSRGYTVKASVRDPND 45 (281)
Q Consensus 9 ~~~ilItGatG~iG~-----~l~~~L~~~g~~V~~~~r~~~~ 45 (281)
||.|.|+++-|++|+ +|+..|.++|++|.+++-+...
T Consensus 1 ~kvIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~~~ 42 (232)
T d1hyqa_ 1 VRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITM 42 (232)
T ss_dssp CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred CEEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 578999988887776 5667888899999999887543
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=82.67 E-value=0.69 Score=33.75 Aligned_cols=32 Identities=9% Similarity=-0.102 Sum_probs=28.5
Q ss_pred eEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCC
Q 023515 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDP 43 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 43 (281)
-++|.|| |..|...+.++.+.|.+|.++.+..
T Consensus 4 DvvVIG~-G~aG~~aA~~a~~~G~kV~iiE~~~ 35 (217)
T d1gesa1 4 DYIAIGG-GSGGIASINRAAMYGQKCALIEAKE 35 (217)
T ss_dssp EEEEECC-SHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCEEEEEeccC
Confidence 3789996 9999999999999999999998753
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=82.15 E-value=1.3 Score=33.83 Aligned_cols=77 Identities=17% Similarity=0.188 Sum_probs=48.8
Q ss_pred CCCeEEEeCC-chHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 8 AGKVVCVTGA-SGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 8 ~~~~ilItGa-tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
++.+||=.|+ +|.+...++++. |.+|++++-++.-.+.........+...+++++.+|..+... . -...|+|+
T Consensus 67 ~~~~vLDiGcG~G~~~~~la~~~---~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~-~--~~sfD~V~ 140 (282)
T d2o57a1 67 RQAKGLDLGAGYGGAARFLVRKF---GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC-E--DNSYDFIW 140 (282)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHH---CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS-C--TTCEEEEE
T ss_pred CCCEEEEeCCCCcHHHhhhhccC---CcEEEEEeccchhhhhhhcccccccccccccccccccccccc-c--ccccchhh
Confidence 4679999987 666555555443 789999998765443333332222333579999999977431 1 12578887
Q ss_pred Eecc
Q 023515 87 HTAS 90 (281)
Q Consensus 87 h~a~ 90 (281)
....
T Consensus 141 ~~~~ 144 (282)
T d2o57a1 141 SQDA 144 (282)
T ss_dssp EESC
T ss_pred ccch
Confidence 6543
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=82.13 E-value=0.66 Score=36.82 Aligned_cols=31 Identities=29% Similarity=0.339 Sum_probs=28.1
Q ss_pred eEEEeCCchHHHHHHHHHHHHCCCEEEEEEcC
Q 023515 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRD 42 (281)
Q Consensus 11 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~ 42 (281)
-++|.| +|.-|..++.+|.+.|++|+++-+.
T Consensus 6 DviIVG-sG~aG~v~A~~La~~G~kVlvLEaG 36 (379)
T d2f5va1 6 DVVIVG-SGPIGCTYARELVGAGYKVAMFDIG 36 (379)
T ss_dssp EEEEEC-CSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred cEEEEC-cCHHHHHHHHHHhhCCCeEEEEecC
Confidence 489999 5999999999999999999999874
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=82.05 E-value=0.56 Score=32.97 Aligned_cols=38 Identities=18% Similarity=0.220 Sum_probs=24.5
Q ss_pred CeEEEeCCchHHHHH-HHHHHHHC-CCEEEEEEcCCCCcch
Q 023515 10 KVVCVTGASGYIASW-LVKLLLSR-GYTVKASVRDPNDPKK 48 (281)
Q Consensus 10 ~~ilItGatG~iG~~-l~~~L~~~-g~~V~~~~r~~~~~~~ 48 (281)
++|.|.|+ |.+|+. .+..|.+. +.+++++++++.....
T Consensus 2 irvgiiG~-G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~ 41 (167)
T d1xeaa1 2 LKIAMIGL-GDIAQKAYLPVLAQWPDIELVLCTRNPKVLGT 41 (167)
T ss_dssp EEEEEECC-CHHHHHTHHHHHTTSTTEEEEEECSCHHHHHH
T ss_pred eEEEEEcC-CHHHHHHHHHHHHhCCCcEEEEEECCHHHHHH
Confidence 37999995 788865 55666555 4677766665544433
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=82.05 E-value=0.78 Score=34.78 Aligned_cols=75 Identities=19% Similarity=0.162 Sum_probs=50.3
Q ss_pred CCCeEEEeCC-chHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEeE
Q 023515 8 AGKVVCVTGA-SGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (281)
Q Consensus 8 ~~~~ilItGa-tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 86 (281)
.+++||=.|+ ||.+..++++.+.. +-+|+.++++++..+...+..+......++++..+|+.+.- .+ ...|.|+
T Consensus 85 pG~rVLEiG~GsG~lt~~la~~v~~-~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~--~~--~~fD~V~ 159 (250)
T d1yb2a1 85 PGMDILEVGVGSGNMSSYILYALNG-KGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFI--SD--QMYDAVI 159 (250)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHTT-SSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCC--CS--CCEEEEE
T ss_pred CcCEEEEeeeeCcHHHHHHHHHhCC-CcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccc--cc--ceeeeee
Confidence 4789999987 68888888888743 34899999887554443333323233468999999997631 11 2578887
Q ss_pred E
Q 023515 87 H 87 (281)
Q Consensus 87 h 87 (281)
.
T Consensus 160 l 160 (250)
T d1yb2a1 160 A 160 (250)
T ss_dssp E
T ss_pred e
Confidence 5
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.78 E-value=4.3 Score=31.63 Aligned_cols=74 Identities=18% Similarity=0.213 Sum_probs=46.0
Q ss_pred cCCCeEEEeCCc-hHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcE
Q 023515 7 AAGKVVCVTGAS-GYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (281)
Q Consensus 7 ~~~~~ilItGat-G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~ 84 (281)
.++++||-.|+. |.+ +..+++.| .+|++++.++ ................+++++.+|+.+.+.- -+..|+
T Consensus 37 ~~~~~VLDlGcGtG~l----s~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~---~~~~D~ 108 (328)
T d1g6q1_ 37 FKDKIVLDVGCGTGIL----SMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLP---FPKVDI 108 (328)
T ss_dssp HTTCEEEEETCTTSHH----HHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCS---SSCEEE
T ss_pred CCcCEEEEeCCCCCHH----HHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCc---ccceeE
Confidence 468999999873 444 34455677 5899998764 2222222222333346899999999875421 135788
Q ss_pred eEEe
Q 023515 85 VCHT 88 (281)
Q Consensus 85 Vih~ 88 (281)
|+..
T Consensus 109 i~se 112 (328)
T d1g6q1_ 109 IISE 112 (328)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 8764
|
| >d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Glycogen synthase 1, GlgA species: Agrobacterium tumefaciens [TaxId: 358]
Probab=81.65 E-value=0.74 Score=38.21 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=19.3
Q ss_pred chHHH---HHHHHHHHHCCCEEEEEE
Q 023515 18 SGYIA---SWLVKLLLSRGYTVKASV 40 (281)
Q Consensus 18 tG~iG---~~l~~~L~~~g~~V~~~~ 40 (281)
+|++| ++|+++|.++||+|+++.
T Consensus 16 ~GGl~~vv~~La~~L~~~Gh~V~Vi~ 41 (477)
T d1rzua_ 16 TGGLADVVGALPIALEAHGVRTRTLI 41 (477)
T ss_dssp SSHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred cCcHHHHHHHHHHHHHHcCCeEEEEe
Confidence 47777 667999999999999985
|
| >d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=80.64 E-value=7.2 Score=27.26 Aligned_cols=42 Identities=24% Similarity=0.277 Sum_probs=29.6
Q ss_pred CeEEEeCCchHHHHHHHHHHHHCC---CEEEEEEcCCCCcchhhhhh
Q 023515 10 KVVCVTGASGYIASWLVKLLLSRG---YTVKASVRDPNDPKKTRHLL 53 (281)
Q Consensus 10 ~~ilItGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~ 53 (281)
+||.|-| -|.||+.+.|.++++. .+|+.+.-. ...+.+..++
T Consensus 1 ikIgING-fGRIGR~v~R~~~~~~~~~i~ivaINd~-~~~~~~ayLl 45 (172)
T d1rm4a1 1 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVINDT-GGVKQASHLL 45 (172)
T ss_dssp EEEEEEC-CSHHHHHHHHHHHHCSSCSEEEEEEECT-TCHHHHHHHH
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCCCCEEEEEEcCC-CCHHHHHHHH
Confidence 3789998 8999999999998764 466665543 3455554443
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=80.62 E-value=2.9 Score=32.70 Aligned_cols=115 Identities=17% Similarity=0.213 Sum_probs=65.3
Q ss_pred CCCeEEEeCC-chHHHHHHHHHHHHCC-CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHh---cCC
Q 023515 8 AGKVVCVTGA-SGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV---DGC 82 (281)
Q Consensus 8 ~~~~ilItGa-tG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~---~~~ 82 (281)
.+++||=.|+ +|..+-+++ ..| .+|+.++.++...+...+-....+...+++++.+|+.+ .+..+. +..
T Consensus 145 ~g~~VLDl~~g~G~~si~~a----~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~--~~~~~~~~~~~f 218 (324)
T d2as0a2 145 PGDRVLDVFTYTGGFAIHAA----IAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFE--EMEKLQKKGEKF 218 (324)
T ss_dssp TTCEEEETTCTTTHHHHHHH----HTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH--HHHHHHHTTCCE
T ss_pred CCCeeecccCcccchhhhhh----hcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhh--hhHHHHhccCCC
Confidence 3678887765 566665543 456 58999999876554443333333333578999999864 233332 367
Q ss_pred cEeEEecccCCCCCCCccchhhhhHHHHHHHHHHHhhhCCCccEEEEeccc
Q 023515 83 DGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (281)
Q Consensus 83 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (281)
|.||......... . .....-...-..++..+.+..+.+-++.++|+
T Consensus 219 D~Vi~DpP~~~~~-~----~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~ 264 (324)
T d2as0a2 219 DIVVLDPPAFVQH-E----KDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC 264 (324)
T ss_dssp EEEEECCCCSCSS-G----GGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred CchhcCCccccCC-H----HHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 9999775332211 1 11122234455677777765343445555553
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=80.40 E-value=1.2 Score=31.52 Aligned_cols=68 Identities=19% Similarity=0.169 Sum_probs=50.1
Q ss_pred ccCCCeEEEeCCchHHHHHHHHHHHHCCCEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhcCCcEe
Q 023515 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (281)
Q Consensus 6 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V 85 (281)
-+++|+|.|.| -|-=|++=+..|...|.+|++--|..++.-..... .+++ .-++.++++..|+|
T Consensus 13 ~ik~k~IaViG-YGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~-------~Gf~--------v~~~~eA~~~aDii 76 (182)
T d1np3a2 13 IIQGKKVAIIG-YGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEA-------HGLK--------VADVKTAVAAADVV 76 (182)
T ss_dssp HHHTSCEEEEC-CSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHH-------TTCE--------EECHHHHHHTCSEE
T ss_pred HHCCCEEEEEe-eCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhh-------hccc--------cccHHHHhhhcCee
Confidence 35689999999 79999999999999999999888865432111111 1232 35678889999999
Q ss_pred EEec
Q 023515 86 CHTA 89 (281)
Q Consensus 86 ih~a 89 (281)
..+.
T Consensus 77 m~L~ 80 (182)
T d1np3a2 77 MILT 80 (182)
T ss_dssp EECS
T ss_pred eeec
Confidence 8875
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=80.38 E-value=7.3 Score=28.71 Aligned_cols=74 Identities=15% Similarity=0.205 Sum_probs=46.8
Q ss_pred cCCCeEEEeCC-chHHHHHHHHHHHHCC--CEEEEEEcCCCCcchhhhhhhccCCCCcEEEEEcCCCCcCcHHHHhc-CC
Q 023515 7 AAGKVVCVTGA-SGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-GC 82 (281)
Q Consensus 7 ~~~~~ilItGa-tG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-~~ 82 (281)
.+.++|+=+|. .|+--..++..|...+ .+|++++........... ...+++++++|..+.+.+..+-+ ..
T Consensus 79 ~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~------~~~~I~~i~gDs~~~~~~~~l~~~~~ 152 (232)
T d2bm8a1 79 LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS------DMENITLHQGDCSDLTTFEHLREMAH 152 (232)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG------GCTTEEEEECCSSCSGGGGGGSSSCS
T ss_pred hCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc------cccceeeeecccccHHHHHHHHhcCC
Confidence 46788999996 4544444455554443 689999987644322111 12579999999998877766544 24
Q ss_pred cEeE
Q 023515 83 DGVC 86 (281)
Q Consensus 83 d~Vi 86 (281)
|.||
T Consensus 153 dlIf 156 (232)
T d2bm8a1 153 PLIF 156 (232)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 5554
|