BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023516
         (281 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P43703|PARE_HAEIN DNA topoisomerase 4 subunit B OS=Haemophilus influenzae (strain
           ATCC 51907 / DSM 11121 / KW20 / Rd) GN=parE PE=3 SV=1
          Length = 632

 Score = 33.1 bits (74), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 163 LAFILAGGSVVQKNLE-VGEVITVDVSCIVAVTSSVNVQIKYNGPIRRAVF 212
           L  + AGG    KN E  G +  V +S + A++  V++Q+K NG I +  F
Sbjct: 91  LTKLHAGGKFSNKNYEFAGGLHGVGISVVNALSERVDIQVKRNGEIYKIAF 141


>sp|A0KHC4|RLMG_AERHH Ribosomal RNA large subunit methyltransferase G OS=Aeromonas
           hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB
           9240) GN=rlmG PE=3 SV=1
          Length = 380

 Score = 31.6 bits (70), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 10/158 (6%)

Query: 102 PSLARILPIDLAMFGGELLCQPDAFLCSVNDVKVSNTLDQRVRNVIGGIEGFLRQKLTGQ 161
           P+LA   P    + G ++L    A + S        +LD   R ++  +     +K+   
Sbjct: 188 PALANPFPTVWPLEGTDMLIHNHANVFS------RTSLDIGARFMLDNLPIHSARKVIDL 241

Query: 162 GLAFILAGGSVVQKNLEVGEVITVDVSCIVAVTSSVNVQIKYNGPIRRAVFGGDNLVTAV 221
           G    + G S++ ++ EV EV  +D S +   ++ +NV+      + R  F  +N +  V
Sbjct: 242 GCGNGVLGLSLLARDAEV-EVTFIDESHMAVASARLNVEHNLPAALPRTHFLVNNCLDGV 300

Query: 222 VTGPGIVFIQSLPFHRL---SQRIARAVTSPNMRENPK 256
             G     + + PFH+L   +  IA  + S   R  PK
Sbjct: 301 AVGSVDRILCNPPFHQLQAITDHIAWQMFSDAHRVLPK 338


>sp|C5PFU3|AIM24_COCP7 Altered inheritance of mitochondria protein 24, mitochondrial
           OS=Coccidioides posadasii (strain C735) GN=aim24 PE=3
           SV=1
          Length = 393

 Score = 31.2 bits (69), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 6/77 (7%)

Query: 119 LLCQPDAFLCSV-NDVKVSNTLDQRVRNVIGGIEGFLRQKLTGQGLAFILAGGSVVQKNL 177
           ++ Q DA L    + + V  TL++ +  V  G       K+TG+GL  ++  G V   NL
Sbjct: 168 MITQRDALLSWTGHALTVKPTLNRELSLVHWG-----SSKVTGRGLLAVVGKGQVYSINL 222

Query: 178 EVGEVITVDVSCIVAVT 194
             GE      S +VA T
Sbjct: 223 RAGERYIAHPSNVVAYT 239


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.140    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,591,777
Number of Sequences: 539616
Number of extensions: 4115773
Number of successful extensions: 11492
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 11492
Number of HSP's gapped (non-prelim): 3
length of query: 281
length of database: 191,569,459
effective HSP length: 116
effective length of query: 165
effective length of database: 128,974,003
effective search space: 21280710495
effective search space used: 21280710495
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)