Query 023516
Match_columns 281
No_of_seqs 144 out of 1452
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 04:37:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023516.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023516hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00266 conserved hypothetic 100.0 1.8E-52 4E-57 372.8 29.5 218 23-248 1-220 (222)
2 COG2013 Uncharacterized conser 100.0 6.1E-51 1.3E-55 362.3 26.6 220 21-247 4-225 (227)
3 PF01987 AIM24: Mitochondrial 100.0 3.6E-45 7.8E-50 323.6 20.2 206 25-234 1-215 (215)
4 TIGR00266 conserved hypothetic 99.9 2.8E-20 6.2E-25 166.0 16.9 131 97-233 5-143 (222)
5 COG2013 Uncharacterized conser 99.8 5.6E-20 1.2E-24 163.9 17.4 124 106-233 17-148 (227)
6 PF01987 AIM24: Mitochondrial 99.7 2.7E-17 5.8E-22 145.5 11.3 128 104-233 8-147 (215)
7 PF11142 DUF2917: Protein of u 61.4 9.7 0.00021 27.2 2.9 33 161-193 24-56 (63)
8 TIGR00849 gutA PTS system, glu 50.2 17 0.00036 29.6 2.9 62 163-234 39-106 (121)
9 KOG0812 SNARE protein SED5/Syn 47.4 3.1 6.7E-05 38.7 -2.0 25 248-273 286-310 (311)
10 PRK10377 PTS system glucitol/s 37.1 35 0.00075 27.7 2.8 62 163-234 39-106 (120)
11 PF06624 RAMP4: Ribosome assoc 36.7 14 0.00031 26.6 0.4 41 236-276 12-54 (63)
12 smart00310 PTBI Phosphotyrosin 35.4 1.8E+02 0.0038 22.8 6.5 24 223-246 70-93 (98)
13 PLN02288 mannose-6-phosphate i 32.7 4E+02 0.0087 26.0 9.9 28 36-63 252-279 (394)
14 PRK05889 putative acetyl-CoA c 32.6 1.8E+02 0.0039 20.6 8.0 27 99-128 5-31 (71)
15 COG1791 Uncharacterized conser 29.5 2.1E+02 0.0045 24.9 6.4 64 157-225 101-165 (181)
16 PRK04190 glucose-6-phosphate i 28.4 1.1E+02 0.0024 26.7 4.8 33 157-189 103-136 (191)
17 cd01204 IRS_PTB Insulin recept 28.1 44 0.00096 26.3 1.9 19 215-233 59-82 (104)
18 cd00824 PTBI IRS-like phosphot 24.6 57 0.0012 25.7 2.1 24 223-246 71-94 (104)
19 COG1482 ManA Phosphomannose is 23.9 97 0.0021 29.3 3.8 31 34-64 157-187 (312)
20 PRK00030 minC septum formation 23.3 6E+02 0.013 23.8 8.8 24 32-55 184-207 (292)
21 PF03829 PTSIIA_gutA: PTS syst 23.1 50 0.0011 26.6 1.5 65 164-238 40-110 (117)
22 PRK00794 flbT flagellar biosyn 21.5 1.4E+02 0.0031 24.5 3.9 27 35-62 4-30 (132)
23 PF01696 Adeno_E1B_55K: Adenov 21.2 1.3E+02 0.0028 29.3 4.1 61 170-231 44-107 (386)
24 PF07883 Cupin_2: Cupin domain 20.7 2.2E+02 0.0047 19.3 4.3 25 180-204 36-60 (71)
25 PF07338 DUF1471: Protein of u 20.3 70 0.0015 22.2 1.6 34 226-263 6-41 (56)
No 1
>TIGR00266 conserved hypothetical protein TIGR00266.
Probab=100.00 E-value=1.8e-52 Score=372.82 Aligned_cols=218 Identities=22% Similarity=0.339 Sum_probs=200.0
Q ss_pred eeEEEecC-CceEEEEEeCCCCeEEEecCeeeEEeCCeEEEEEEcccCcccceeeeecceeeeeeeeecCCCceEEEEec
Q 023516 23 IPFQILGG-EAQVCQIMLKPQEKVVARPGSMCFMSGSMEMENIYIPENEVGMWQWLFGKTITSVVLRNPGPSDGFVGIAA 101 (281)
Q Consensus 23 ~~f~i~g~-~~~il~v~L~~Ge~v~ae~Gamva~sg~v~~~~~~~~~~~gg~~~~l~Ge~~f~~~~~~~~~g~G~V~lap 101 (281)
|+|+|.++ ++++|+|+|+|||+|++|+|||+||+++|+++++..++..+++.|+++||++|+++|+++ +++|+|+++|
T Consensus 1 m~~~i~~~~~~~~l~v~L~~ge~v~ae~GaMv~~~~~v~~~~~~~gG~~~~l~r~~~GEs~f~~~~~a~-~g~G~v~lap 79 (222)
T TIGR00266 1 MLYKIRHRPSYSMLELTLKPGERVLAETGAMVSMDGGVELSTECGGGLLGALKRSLGGESLFLNAFHAP-QGPGSLQLAP 79 (222)
T ss_pred CeEEEecCCCceEEEEEECCCCEEEEecCeEEEecCCeEEEEEECChHHHHHHHHhcCCceEEEEEEcC-CCCEEEEEeC
Confidence 68999987 589999999999999999999999999999999974333345666789999999999875 4789999999
Q ss_pred CCCCeEEEEEccCCCCeEEEcCCeEEEEeCCEEEEEEEccccceeeeeccceEEEEEEeeeEEEEeeCCcEEEEEcCCCC
Q 023516 102 PSLARILPIDLAMFGGELLCQPDAFLCSVNDVKVSNTLDQRVRNVIGGIEGFLRQKLTGQGLAFILAGGSVVQKNLEVGE 181 (281)
Q Consensus 102 ~~~G~I~~i~L~~~ge~i~v~~ga~LA~~~~V~~~~~~~~~~~~~~~gGeglf~~~~sG~G~v~L~~~G~i~~~~L~~ge 181 (281)
+.||+|..+++. +|++++++++|||++++|++++++. ++ +++++|||+|+++++|+|+||++++|+|++++|+ |
T Consensus 80 ~~pg~i~~i~l~--ge~i~v~~ga~lA~~~~V~~~~~~~-g~-~~~~~Geglf~~~~~G~G~V~l~~~G~ii~~~l~--~ 153 (222)
T TIGR00266 80 ALPGDITHLLLT--KNGIYAQSGAFLAHTSGVEIDTKWG-GL-KTFFAGEGLFLLKLQGKGDVFLSSYGTLNQLSVN--G 153 (222)
T ss_pred CCCcCEEEEEcC--CCEEEEECCeEEEeCCCeEEEEEeh-hh-ceeEecCcEEEEEEEeeeEEEEECCceEEEEeCC--C
Confidence 999999999886 7899999999999999999999985 35 4589999999999999999999999999999984 6
Q ss_pred EEEEcCCeEEEEcCCeEEEEEE-eCceeeeeEecceEEEEEEEecEEEEEeccChhHHHHHHHhhCCC
Q 023516 182 VITVDVSCIVAVTSSVNVQIKY-NGPIRRAVFGGDNLVTAVVTGPGIVFIQSLPFHRLSQRIARAVTS 248 (281)
Q Consensus 182 ~l~Vd~~~~vA~~~~v~~~i~~-~~gl~~~~~~GEGl~~~~~~G~G~V~lqs~~~~~l~~~~~~~lp~ 248 (281)
+++||++|+|||++++++++++ .+++++.+++|||++ ++|+|||+||+|||++++|++||++++|+
T Consensus 154 ~~~Vd~~~~vA~~~~v~~~i~~~~~~l~~~~~sGEGl~-~~~tG~G~V~vQs~~~~~~~~~~~~~~~~ 220 (222)
T TIGR00266 154 SFVVDTGHIVAFEPTLDYKVNKPVGGLKGDVLSGEGLV-SLFKGSGKVYWQSRSLSSFVGWLRSRLPS 220 (222)
T ss_pred EEEEECCeEEEECCCceEEEEEeeCCceeEEEcCCeEE-EEEEeCeEEEEEcCCHHHHHHHHHhhCcC
Confidence 9999999999999999999999 578888889999998 99999999999999999999999999994
No 2
>COG2013 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=6.1e-51 Score=362.29 Aligned_cols=220 Identities=26% Similarity=0.431 Sum_probs=204.0
Q ss_pred CeeeEEEecC-CceEEEEEeCCCCeEEEecCeeeEEeCCeEEEEEEcc-cCcccceeeeecceeeeeeeeecCCCceEEE
Q 023516 21 AVIPFQILGG-EAQVCQIMLKPQEKVVARPGSMCFMSGSMEMENIYIP-ENEVGMWQWLFGKTITSVVLRNPGPSDGFVG 98 (281)
Q Consensus 21 ~~~~f~i~g~-~~~il~v~L~~Ge~v~ae~Gamva~sg~v~~~~~~~~-~~~gg~~~~l~Ge~~f~~~~~~~~~g~G~V~ 98 (281)
..|+|+|.++ ..++++|+|+|+|+|++|+|+|+||+++|+++++++. +-.++++|+++||++|++.+++. ++|+|+
T Consensus 4 ~~~~y~i~~~~~~~~leveL~~ge~V~~e~Gam~~~~~~v~~~~~~~~gGl~~a~~r~l~GEs~F~~~~~~~--G~~~v~ 81 (227)
T COG2013 4 LEMDYEILGDPSFAVLEVELSPGESVYAEAGAMVYMDGDVEVKTKMGFGGLLGALKRALGGESLFLTKFEGR--GEGEVA 81 (227)
T ss_pred ceeeEEEecCCCccEEEEEeCCCcEEEEecCeEEEccCCEEEEEEecCCcHHHHHHHHhcCCceEEEEEecC--CceeEE
Confidence 3589999988 5899999999999999999999999999999999852 22234556689999999999974 667999
Q ss_pred EecCCCCeEEEEEccCCCCeEEEcCCeEEEEeCCEEEEEEEccccceeeeeccceEEEEEEeeeEEEEeeCCcEEEEEcC
Q 023516 99 IAAPSLARILPIDLAMFGGELLCQPDAFLCSVNDVKVSNTLDQRVRNVIGGIEGFLRQKLTGQGLAFILAGGSVVQKNLE 178 (281)
Q Consensus 99 lap~~~G~I~~i~L~~~ge~i~v~~ga~LA~~~~V~~~~~~~~~~~~~~~gGeglf~~~~sG~G~v~L~~~G~i~~~~L~ 178 (281)
++|++||+|.+++|+ |++|+++.++|||++++|++++++.+.+ ++++|||+|+++++|+|.||++++|++++++|.
T Consensus 82 lap~~pG~I~~~~L~--g~~i~v~~~~FLA~~~~v~~~~~~~~~~--~~~~geGlf~~kl~G~G~v~l~s~G~~~~~~l~ 157 (227)
T COG2013 82 LAPPYPGDIVALELG--GESIIVNDGAFLAAEGGVDYGVEFQGGL--GLFGGEGLFLLKLEGTGTVFLSSYGDPVEVELD 157 (227)
T ss_pred ECCCCCCcEEEEEcC--CCEEEEeCCcEEEecCCceEEEEECccc--ceecCCceEEEEEEeeeEEEEECCCCeEEEEcC
Confidence 999999999999998 7999999999999999999999997754 589999999999999999999999999999999
Q ss_pred CCCEEEEcCCeEEEEcCCeEEEEEEeCceeeeeEecceEEEEEEEecEEEEEeccChhHHHHHHHhhCC
Q 023516 179 VGEVITVDVSCIVAVTSSVNVQIKYNGPIRRAVFGGDNLVTAVVTGPGIVFIQSLPFHRLSQRIARAVT 247 (281)
Q Consensus 179 ~ge~l~Vd~~~~vA~~~~v~~~i~~~~gl~~~~~~GEGl~~~~~~G~G~V~lqs~~~~~l~~~~~~~lp 247 (281)
|||+++||++|+|||+++++|++++.+++++.+++|||++ ++|+|||+||+||++...++.++.+.+|
T Consensus 158 ~ge~~~VD~~~~VA~~~~l~~~v~~~~gl~~~~~~GEGlv-~~f~G~G~V~iq~~~~~~~~~~~~~~~~ 225 (227)
T COG2013 158 PGETVTVDPGHVVAFSDSLDYSVEKVGGLKSSLLSGEGLV-FVFRGPGKVWVQPRSLSAFAGEIGSRLP 225 (227)
T ss_pred CCceEEEcCCcEEEEcCCccEEEEEccchhhhhcccceEE-EEEEeCCEEEEEECCHHHhhHhhhhccC
Confidence 9999999999999999999999999999999999999998 8999999999999999999999999996
No 3
>PF01987 AIM24: Mitochondrial biogenesis AIM24; InterPro: IPR002838 The proteins in this family have no known function.; PDB: 1PG6_A 1YOX_D.
Probab=100.00 E-value=3.6e-45 Score=323.62 Aligned_cols=206 Identities=28% Similarity=0.421 Sum_probs=173.1
Q ss_pred EEEe-cCCceEEEEEeCCCCeEEEecCeeeEEeCCeEEEEEEcccC----cccceeeeecceeeeeeeeecCCCceEEEE
Q 023516 25 FQIL-GGEAQVCQIMLKPQEKVVARPGSMCFMSGSMEMENIYIPEN----EVGMWQWLFGKTITSVVLRNPGPSDGFVGI 99 (281)
Q Consensus 25 f~i~-g~~~~il~v~L~~Ge~v~ae~Gamva~sg~v~~~~~~~~~~----~gg~~~~l~Ge~~f~~~~~~~~~g~G~V~l 99 (281)
|+|. |+++++|+|+|+|+|+|++|+|+|++|++++++++++..++ .+.+.|+++||++|+++|++ .+++|++++
T Consensus 1 ~~i~~g~~~~~l~v~L~~~~~v~~~~Gsmv~~~g~v~~~~~~~~~g~~~l~~~~~~~~~ges~~~~~~~~-~~g~g~v~l 79 (215)
T PF01987_consen 1 YEIIHGPPFSVLSVTLPPGEPVYAEAGSMVAMSGNVKMKTSMSTGGGGGLGGALKRLLGGESLFLNKFTA-ASGPGEVLL 79 (215)
T ss_dssp EEEESSSSS-EEEEEE-TT-EEEEECCGEEEEETTEEEEECC-----SSSHHHHHHHHHT--CCEEEEE--CSSSEEEEE
T ss_pred CEEeeCCCcEEEEEEECCCCeEEEEcCCEEEEeCCceeeeeecccCccchhHHHHHhhcCCcceeEEEEe-cCCCeEEEE
Confidence 8997 88999999999999999999999999999999999762111 12233557899999988874 468999999
Q ss_pred ecCCCCeEEEEEccCCCCeEEEcCCeEEEEeCCEEEEEEEccccceeeeeccceEEEEEEeeeEEEEeeCCcEEEEEcCC
Q 023516 100 AAPSLARILPIDLAMFGGELLCQPDAFLCSVNDVKVSNTLDQRVRNVIGGIEGFLRQKLTGQGLAFILAGGSVVQKNLEV 179 (281)
Q Consensus 100 ap~~~G~I~~i~L~~~ge~i~v~~ga~LA~~~~V~~~~~~~~~~~~~~~gGeglf~~~~sG~G~v~L~~~G~i~~~~L~~ 179 (281)
+|+.||+|..++|++ ++.|+++++++||+++++++++++. ++++++++|+++|+++++|+|.|||+++|+|++++|+|
T Consensus 80 a~~~~g~i~~l~L~~-~~~~~v~~~~~la~~~~v~~~~~~~-~~~~~~~~~~g~~~~~l~G~G~v~l~~~G~i~~i~L~~ 157 (215)
T PF01987_consen 80 APNGPGDIVVLELDG-GEGWIVQRGSFLAASGGVSLDVKFQ-GLGKGLFGGEGLFMLKLSGRGTVFLSGYGAIYEIDLAP 157 (215)
T ss_dssp --SSSEEEEEEECCC-GTEEEEECCGEEEEETTSEEEEEEE---SSSGGGTS-EEEEEEESSCEEEEEECCSEEEEEEE-
T ss_pred ECCCCCeEEEEEeCC-CCeEEEeCCCEEEecCCcEEEEEEe-eeccccccCCCcEEEEEEEEEEEEEEeCCcEEEEEccC
Confidence 999999999999996 5899999999999999999999987 56667899999999999999999999999999999999
Q ss_pred CCEEEEcCCeEEEEcCCeEEEEEEe-C---ceeeeeEecceEEEEEEEecEEEEEeccC
Q 023516 180 GEVITVDVSCIVAVTSSVNVQIKYN-G---PIRRAVFGGDNLVTAVVTGPGIVFIQSLP 234 (281)
Q Consensus 180 ge~l~Vd~~~~vA~~~~v~~~i~~~-~---gl~~~~~~GEGl~~~~~~G~G~V~lqs~~ 234 (281)
||+++||++|+|||++++++++++. + ++++.+++|||++ ++|+|||+||+|||+
T Consensus 158 ge~~~Vd~~~lVA~~~~~~~~~~~~~~~~~~~~~~~~~Geg~~-~~~~GpG~V~iQs~~ 215 (215)
T PF01987_consen 158 GEEIIVDPGHLVAWSGSLQYDIRRVVGSLGGLKGSLFSGEGLF-CRFTGPGTVLIQSRN 215 (215)
T ss_dssp EEEEEEEGGGEEEEETTCEEEEEECST---THHHCCCCTS-EE-EEEEEEEEEEEESS-
T ss_pred CceEEEcCCCEEEECCCccceeEeccchhhhhhcccCCCCeEE-EEEEcCEEEEEEeCC
Confidence 9999999999999999999999998 4 5777888999998 699999999999985
No 4
>TIGR00266 conserved hypothetical protein TIGR00266.
Probab=99.85 E-value=2.8e-20 Score=165.95 Aligned_cols=131 Identities=21% Similarity=0.324 Sum_probs=113.9
Q ss_pred EEEecCCCCeEEEEEccCCCCeEEEcCCeEEEEeCCEEEEEEEccccce---eeeeccceEEEEEE---eeeEEEEee--
Q 023516 97 VGIAAPSLARILPIDLAMFGGELLCQPDAFLCSVNDVKVSNTLDQRVRN---VIGGIEGFLRQKLT---GQGLAFILA-- 168 (281)
Q Consensus 97 V~lap~~~G~I~~i~L~~~ge~i~v~~ga~LA~~~~V~~~~~~~~~~~~---~~~gGeglf~~~~s---G~G~v~L~~-- 168 (281)
|...|+++ +++++|++ ||++++++|+|++++++|+++++..+++.+ .+++||++|+++++ |+|+|++++
T Consensus 5 i~~~~~~~--~l~v~L~~-ge~v~ae~GaMv~~~~~v~~~~~~~gG~~~~l~r~~~GEs~f~~~~~a~~g~G~v~lap~~ 81 (222)
T TIGR00266 5 IRHRPSYS--MLELTLKP-GERVLAETGAMVSMDGGVELSTECGGGLLGALKRSLGGESLFLNAFHAPQGPGSLQLAPAL 81 (222)
T ss_pred EecCCCce--EEEEEECC-CCEEEEecCeEEEecCCeEEEEEECChHHHHHHHHhcCCceEEEEEEcCCCCEEEEEeCCC
Confidence 44444455 99999998 899999999999999999999998544432 27899999999984 789999997
Q ss_pred CCcEEEEEcCCCCEEEEcCCeEEEEcCCeEEEEEEeCceeeeeEecceEEEEEEEecEEEEEecc
Q 023516 169 GGSVVQKNLEVGEVITVDVSCIVAVTSSVNVQIKYNGPIRRAVFGGDNLVTAVVTGPGIVFIQSL 233 (281)
Q Consensus 169 ~G~i~~~~L~~ge~l~Vd~~~~vA~~~~v~~~i~~~~gl~~~~~~GEGl~~~~~~G~G~V~lqs~ 233 (281)
+|+|..+++. ||+++|+.+++||+++++++++++.+ ++ .+++|||+|+++++|+|+||+.+.
T Consensus 82 pg~i~~i~l~-ge~i~v~~ga~lA~~~~V~~~~~~~g-~~-~~~~Geglf~~~~~G~G~V~l~~~ 143 (222)
T TIGR00266 82 PGDITHLLLT-KNGIYAQSGAFLAHTSGVEIDTKWGG-LK-TFFAGEGLFLLKLQGKGDVFLSSY 143 (222)
T ss_pred CcCEEEEEcC-CCEEEEECCeEEEeCCCeEEEEEehh-hc-eeEecCcEEEEEEEeeeEEEEECC
Confidence 5999999885 89999999999999999999998864 54 578999999999999999999984
No 5
>COG2013 Uncharacterized conserved protein [Function unknown]
Probab=99.85 E-value=5.6e-20 Score=163.94 Aligned_cols=124 Identities=25% Similarity=0.460 Sum_probs=112.1
Q ss_pred eEEEEEccCCCCeEEEcCCeEEEEeCCEEEEEEEc-cccce---eeeeccceEEEEEEeeeE--EEEee--CCcEEEEEc
Q 023516 106 RILPIDLAMFGGELLCQPDAFLCSVNDVKVSNTLD-QRVRN---VIGGIEGFLRQKLTGQGL--AFILA--GGSVVQKNL 177 (281)
Q Consensus 106 ~I~~i~L~~~ge~i~v~~ga~LA~~~~V~~~~~~~-~~~~~---~~~gGeglf~~~~sG~G~--v~L~~--~G~i~~~~L 177 (281)
.+++++|++ ++++++++|+|++++++|++++++. +++.+ ..++||++|+++++|+|. |++++ +|+|..++|
T Consensus 17 ~~leveL~~-ge~V~~e~Gam~~~~~~v~~~~~~~~gGl~~a~~r~l~GEs~F~~~~~~~G~~~v~lap~~pG~I~~~~L 95 (227)
T COG2013 17 AVLEVELSP-GESVYAEAGAMVYMDGDVEVKTKMGFGGLLGALKRALGGESLFLTKFEGRGEGEVALAPPYPGDIVALEL 95 (227)
T ss_pred cEEEEEeCC-CcEEEEecCeEEEccCCEEEEEEecCCcHHHHHHHHhcCCceEEEEEecCCceeEEECCCCCCcEEEEEc
Confidence 489999998 8999999999999999999999986 44422 278999999999996665 88886 699999999
Q ss_pred CCCCEEEEcCCeEEEEcCCeEEEEEEeCceeeeeEecceEEEEEEEecEEEEEecc
Q 023516 178 EVGEVITVDVSCIVAVTSSVNVQIKYNGPIRRAVFGGDNLVTAVVTGPGIVFIQSL 233 (281)
Q Consensus 178 ~~ge~l~Vd~~~~vA~~~~v~~~i~~~~gl~~~~~~GEGl~~~~~~G~G~V~lqs~ 233 (281)
. ||+++|+.++++|++++++|++++.+++ ++++|||+|+.+++|+|.||+++.
T Consensus 96 ~-g~~i~v~~~~FLA~~~~v~~~~~~~~~~--~~~~geGlf~~kl~G~G~v~l~s~ 148 (227)
T COG2013 96 G-GESIIVNDGAFLAAEGGVDYGVEFQGGL--GLFGGEGLFLLKLEGTGTVFLSSY 148 (227)
T ss_pred C-CCEEEEeCCcEEEecCCceEEEEECccc--ceecCCceEEEEEEeeeEEEEECC
Confidence 8 9999999999999999999999999865 689999999999999999999996
No 6
>PF01987 AIM24: Mitochondrial biogenesis AIM24; InterPro: IPR002838 The proteins in this family have no known function.; PDB: 1PG6_A 1YOX_D.
Probab=99.72 E-value=2.7e-17 Score=145.50 Aligned_cols=128 Identities=22% Similarity=0.437 Sum_probs=103.7
Q ss_pred CCeEEEEEccCCCCeEEEcCCeEEEEeCCEEEEEEEc----cccc---eeeeeccceEEEEEE---eeeEEEEee--CCc
Q 023516 104 LARILPIDLAMFGGELLCQPDAFLCSVNDVKVSNTLD----QRVR---NVIGGIEGFLRQKLT---GQGLAFILA--GGS 171 (281)
Q Consensus 104 ~G~I~~i~L~~~ge~i~v~~ga~LA~~~~V~~~~~~~----~~~~---~~~~gGeglf~~~~s---G~G~v~L~~--~G~ 171 (281)
+..++.|+|++ ++++++++|+|+|++++++++.++. +.+. +.+++||++|+++++ |+|.+++++ +|+
T Consensus 8 ~~~~l~v~L~~-~~~v~~~~Gsmv~~~g~v~~~~~~~~~g~~~l~~~~~~~~~ges~~~~~~~~~~g~g~v~la~~~~g~ 86 (215)
T PF01987_consen 8 PFSVLSVTLPP-GEPVYAEAGSMVAMSGNVKMKTSMSTGGGGGLGGALKRLLGGESLFLNKFTAASGPGEVLLAPNGPGD 86 (215)
T ss_dssp SS-EEEEEE-T-T-EEEEECCGEEEEETTEEEEECC-----SSSHHHHHHHHHT--CCEEEEE-CSSSEEEEE--SSSEE
T ss_pred CcEEEEEEECC-CCeEEEEcCCEEEEeCCceeeeeecccCccchhHHHHHhhcCCcceeEEEEecCCCeEEEEECCCCCe
Confidence 45699999998 8999999999999999999999652 1121 236789999999886 999999997 577
Q ss_pred EEEEEcCCCCEEEEcCCeEEEEcCCeEEEEEEeCceeeeeEecceEEEEEEEecEEEEEecc
Q 023516 172 VVQKNLEVGEVITVDVSCIVAVTSSVNVQIKYNGPIRRAVFGGDNLVTAVVTGPGIVFIQSL 233 (281)
Q Consensus 172 i~~~~L~~ge~l~Vd~~~~vA~~~~v~~~i~~~~gl~~~~~~GEGl~~~~~~G~G~V~lqs~ 233 (281)
|..++|+++|.++|++++++|+++++++++++. ++.+.+++|+|+++.+++|+|+|||.+.
T Consensus 87 i~~l~L~~~~~~~v~~~~~la~~~~v~~~~~~~-~~~~~~~~~~g~~~~~l~G~G~v~l~~~ 147 (215)
T PF01987_consen 87 IVVLELDGGEGWIVQRGSFLAASGGVSLDVKFQ-GLGKGLFGGEGLFMLKLSGRGTVFLSGY 147 (215)
T ss_dssp EEEEECCCGTEEEEECCGEEEEETTSEEEEEEE---SSSGGGTS-EEEEEEESSCEEEEEEC
T ss_pred EEEEEeCCCCeEEEeCCCEEEecCCcEEEEEEe-eeccccccCCCcEEEEEEEEEEEEEEeC
Confidence 999999966899999999999999999999999 5766789999999999999999999985
No 7
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=61.37 E-value=9.7 Score=27.20 Aligned_cols=33 Identities=15% Similarity=0.239 Sum_probs=25.6
Q ss_pred eeEEEEeeCCcEEEEEcCCCCEEEEcCCeEEEE
Q 023516 161 QGLAFILAGGSVVQKNLEVGEVITVDVSCIVAV 193 (281)
Q Consensus 161 ~G~v~L~~~G~i~~~~L~~ge~l~Vd~~~~vA~ 193 (281)
.|.|||.-.|+...+=|.|||.+.+.++.-|--
T Consensus 24 ~G~vWlT~~g~~~D~~L~~G~~l~l~~g~~vvl 56 (63)
T PF11142_consen 24 SGRVWLTREGDPDDYWLQAGDSLRLRRGGRVVL 56 (63)
T ss_pred cccEEEECCCCCCCEEECCCCEEEeCCCCEEEE
Confidence 568899888877777788888888887765543
No 8
>TIGR00849 gutA PTS system, glucitol/sorbitol-specific IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. This family consists only of glucitol-specific transporters, and occur both in Gram-negative and Gram-positive bacteria.The system in E.Coli consists of a IIA protein, and a IIBC protein. This family is specific for the IIA component.
Probab=50.24 E-value=17 Score=29.59 Aligned_cols=62 Identities=19% Similarity=0.285 Sum_probs=38.2
Q ss_pred EEEEeeCCcEEEEEcCCCCEEEEcCCeEEEEcCCeEEEEEEeCceeeeeEecceEEEEEEEe------cEEEEEeccC
Q 023516 163 LAFILAGGSVVQKNLEVGEVITVDVSCIVAVTSSVNVQIKYNGPIRRAVFGGDNLVTAVVTG------PGIVFIQSLP 234 (281)
Q Consensus 163 ~v~L~~~G~i~~~~L~~ge~l~Vd~~~~vA~~~~v~~~i~~~~gl~~~~~~GEGl~~~~~~G------~G~V~lqs~~ 234 (281)
.++++..+++.. ++.+|+.+.+|. -+|.|..+|...+.=+..=|-..++|.| ||.++|....
T Consensus 39 ~cvih~~~~~~~-~i~~Gd~l~i~~---------~~Y~ItaVG~~a~~NL~~LGHiTi~F~g~~~~~lpG~I~v~~~~ 106 (121)
T TIGR00849 39 YCFIHNIKEVKG-TLKPGQVFMIGG---------IAYPVTAVGDVAEKNLRSLGHITVRFDGSNVAEFPGTVHVEGKE 106 (121)
T ss_pred eEEEEEcCcccC-CcCCCCEEEECC---------EEEEEEEEhHHHHHHHHhcCCEEEEECCCCCcccCCEEEEcCCC
Confidence 567776665554 577788887764 3788888874332111222333455555 8999998753
No 9
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.43 E-value=3.1 Score=38.65 Aligned_cols=25 Identities=36% Similarity=0.486 Sum_probs=20.5
Q ss_pred CCCccCCCceEEEehhHHHHHHHhhh
Q 023516 248 SPNMRENPKFFVQIAIFFFLAYVVIV 273 (281)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (281)
+.++|.--|+|.+ .|+|||+||+.+
T Consensus 286 SSNRwLmvkiF~i-~ivFflvfvlf~ 310 (311)
T KOG0812|consen 286 SSNRWLMVKIFGI-LIVFFLVFVLFL 310 (311)
T ss_pred ccchHHHHHHHHH-HHHHHHHHHHhc
Confidence 5688999999875 588999999865
No 10
>PRK10377 PTS system glucitol/sorbitol-specific transporter subunit IIA; Provisional
Probab=37.09 E-value=35 Score=27.69 Aligned_cols=62 Identities=19% Similarity=0.261 Sum_probs=36.7
Q ss_pred EEEEeeCCcEEEEEcCCCCEEEEcCCeEEEEcCCeEEEEEEeCceeeeeEecceEEEEEEEe------cEEEEEeccC
Q 023516 163 LAFILAGGSVVQKNLEVGEVITVDVSCIVAVTSSVNVQIKYNGPIRRAVFGGDNLVTAVVTG------PGIVFIQSLP 234 (281)
Q Consensus 163 ~v~L~~~G~i~~~~L~~ge~l~Vd~~~~vA~~~~v~~~i~~~~gl~~~~~~GEGl~~~~~~G------~G~V~lqs~~ 234 (281)
.++++..++ ..-++.+|+.+.+|. -+|.|..+|...+.=+..=|-...+|.| ||.++|....
T Consensus 39 ~cvih~~~~-~~~~i~~Gd~l~i~~---------~~Y~ItaVG~~a~~NL~~LGHiTi~F~g~~~~~lpG~I~v~~~~ 106 (120)
T PRK10377 39 YCFIHCHGE-LKGALQPGLQFELGQ---------HRYPVTAVGSVAEDNLRELGHVTLRFDGLNEAEFPGTVHVAGPV 106 (120)
T ss_pred eEEEEEcCc-ccCccCCCCEEEECC---------EEEEEEEEhHHHHHHHHhcCCEEEEECCCCCcccCCEEEEcCCC
Confidence 456665543 234566777777764 3788988874332112222333455655 8999998753
No 11
>PF06624 RAMP4: Ribosome associated membrane protein RAMP4; InterPro: IPR010580 This entry contains Serp1/Ramp4, which has been shown to interacts with target proteins during their translocation into the lumen of the endoplasmic reticulum. It has also been shown to protect unfolded target proteins against degradation during ER stress. It may facilitate glycosylation of target proteins after termination of ER stress and may modulate the use of N-glycosylation sites on target proteins [, ].
Probab=36.68 E-value=14 Score=26.59 Aligned_cols=41 Identities=20% Similarity=0.301 Sum_probs=29.7
Q ss_pred hHHHHHHHh--hCCCCCccCCCceEEEehhHHHHHHHhhhhee
Q 023516 236 HRLSQRIAR--AVTSPNMRENPKFFVQIAIFFFLAYVVIVSSL 276 (281)
Q Consensus 236 ~~l~~~~~~--~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (281)
+++...+.+ ++|+...+...||=|--.+..|++|||+-|++
T Consensus 12 ~kf~kni~krG~v~~~~k~k~~k~pVgp~~L~l~iFVV~Gs~i 54 (63)
T PF06624_consen 12 EKFSKNITKRGKVPKSLKKKEKKYPVGPWLLGLFIFVVCGSAI 54 (63)
T ss_pred HHHHhhHHhcCCCccccccccccCCcCHHHHhhhheeeEcHHH
Confidence 344444443 36666555678899999999999999998765
No 12
>smart00310 PTBI Phosphotyrosine-binding domain (IRS1-like).
Probab=35.37 E-value=1.8e+02 Score=22.77 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=19.3
Q ss_pred EecEEEEEeccChhHHHHHHHhhC
Q 023516 223 TGPGIVFIQSLPFHRLSQRIARAV 246 (281)
Q Consensus 223 ~G~G~V~lqs~~~~~l~~~~~~~l 246 (281)
+|||..|+|+...+.+=+.+..++
T Consensus 70 tG~G~f~f~t~~a~~i~~~v~~a~ 93 (98)
T smart00310 70 SGPGEFTFQTVVAQEIFQLVLEAM 93 (98)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHH
Confidence 699999999998888776666543
No 13
>PLN02288 mannose-6-phosphate isomerase
Probab=32.72 E-value=4e+02 Score=26.01 Aligned_cols=28 Identities=14% Similarity=0.071 Sum_probs=22.8
Q ss_pred EEEeCCCCeEEEecCeeeEEeCCeEEEE
Q 023516 36 QIMLKPQEKVVARPGSMCFMSGSMEMEN 63 (281)
Q Consensus 36 ~v~L~~Ge~v~ae~Gamva~sg~v~~~~ 63 (281)
.|.|+|||.|+..+|.+-||=...=+|-
T Consensus 252 ~v~L~PGeaifl~ag~~HAYl~G~~vE~ 279 (394)
T PLN02288 252 YVKLNPGEALYLGANEPHAYLSGECIEC 279 (394)
T ss_pred eEecCCCCEEEecCCCCceecCCCeEEe
Confidence 6889999999999999988766544443
No 14
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=32.61 E-value=1.8e+02 Score=20.56 Aligned_cols=27 Identities=19% Similarity=0.210 Sum_probs=20.3
Q ss_pred EecCCCCeEEEEEccCCCCeEEEcCCeEEE
Q 023516 99 IAAPSLARILPIDLAMFGGELLCQPDAFLC 128 (281)
Q Consensus 99 lap~~~G~I~~i~L~~~ge~i~v~~ga~LA 128 (281)
+.++.+|.|..+..+. |+ .+++|.-||
T Consensus 5 v~a~~~G~i~~~~v~~-Gd--~V~~g~~l~ 31 (71)
T PRK05889 5 VRAEIVASVLEVVVNE-GD--QIGKGDTLV 31 (71)
T ss_pred EeCCCCEEEEEEEeCC-CC--EECCCCEEE
Confidence 5667899999999986 55 456676666
No 15
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=29.49 E-value=2.1e+02 Score=24.88 Aligned_cols=64 Identities=23% Similarity=0.235 Sum_probs=46.5
Q ss_pred EEEeeeEEEEee-CCcEEEEEcCCCCEEEEcCCeEEEEcCCeEEEEEEeCceeeeeEecceEEEEEEEec
Q 023516 157 KLTGQGLAFILA-GGSVVQKNLEVGEVITVDVSCIVAVTSSVNVQIKYNGPIRRAVFGGDNLVTAVVTGP 225 (281)
Q Consensus 157 ~~sG~G~v~L~~-~G~i~~~~L~~ge~l~Vd~~~~vA~~~~v~~~i~~~~gl~~~~~~GEGl~~~~~~G~ 225 (281)
-+.|.|...+++ .|.++.+.|.+|+-+.|.++-.=-|+-+-+..++..+ .+..-||++ ..++|.
T Consensus 101 ~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvR----lF~~~~gWV-a~ytg~ 165 (181)
T COG1791 101 FVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVR----LFTEPEGWV-AIYTGD 165 (181)
T ss_pred EEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEE----EeeCCCCce-eeecCc
Confidence 356777777775 7899999999999999998877777766666666543 233567776 677776
No 16
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=28.35 E-value=1.1e+02 Score=26.68 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=24.5
Q ss_pred EEEeeeEEEEee-CCcEEEEEcCCCCEEEEcCCe
Q 023516 157 KLTGQGLAFILA-GGSVVQKNLEVGEVITVDVSC 189 (281)
Q Consensus 157 ~~sG~G~v~L~~-~G~i~~~~L~~ge~l~Vd~~~ 189 (281)
-++|+|.+.+.. .|+.....+.||+.+.|.++.
T Consensus 103 vlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPpg~ 136 (191)
T PRK04190 103 GLKGKGLMLLQDPEGEARWIEMEPGTVVYVPPYW 136 (191)
T ss_pred EEeCEEEEEEecCCCcEEEEEECCCCEEEECCCC
Confidence 457788888764 467777888888888887763
No 17
>cd01204 IRS_PTB Insulin receptor substrate (IRS) Phosphotyrosine-binding domain(PTB). Insulin receptor substrate (IRS) Phosphotyrosine-binding domain(PTB). This domain has a PH-like fold and is found in insulin receptor substrate molecules. IRS molecules have an N-terminal PH domain , which is followed by an IRS-like PTB domain. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs in the insulin receptor, IGF-I receptor and the IL-4 receptor.
Probab=28.08 E-value=44 Score=26.32 Aligned_cols=19 Identities=37% Similarity=0.585 Sum_probs=14.1
Q ss_pred ceEEEEEE-----EecEEEEEecc
Q 023516 215 DNLVTAVV-----TGPGIVFIQSL 233 (281)
Q Consensus 215 EGl~~~~~-----~G~G~V~lqs~ 233 (281)
|.+|.+.+ +|||.+|+|.-
T Consensus 59 ~~~Ff~E~GRsa~tG~GElWMq~d 82 (104)
T cd01204 59 ENFFFIEVGRSAVTGPGELWMQVD 82 (104)
T ss_pred ccEEEEEecccccCCCCcEEEEcc
Confidence 34554554 89999999984
No 18
>cd00824 PTBI IRS-like phosphotyrosine-binding domain. IRS-like phosphotyrosine-binding domain (PTBi); This domain has a PH-like fold and is found in insulin receptor substrate molecules and in other eukaryotic signaling molecules such as FRS2 and Dok. IRS and Dok molecules have an N-terminal PH domain, which is followed by an IRS-like PTB domain. FRS2 just has an N-terminal PTBi domain. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=24.58 E-value=57 Score=25.74 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=20.2
Q ss_pred EecEEEEEeccChhHHHHHHHhhC
Q 023516 223 TGPGIVFIQSLPFHRLSQRIARAV 246 (281)
Q Consensus 223 ~G~G~V~lqs~~~~~l~~~~~~~l 246 (281)
+|||..|+|+...+.+.+.+..++
T Consensus 71 tG~G~f~f~t~~~~~I~~~v~~~i 94 (104)
T cd00824 71 TGEGIFTFQTDRAEEIFQNVHETI 94 (104)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHH
Confidence 799999999998888887776554
No 19
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=23.88 E-value=97 Score=29.34 Aligned_cols=31 Identities=19% Similarity=0.274 Sum_probs=26.6
Q ss_pred EEEEEeCCCCeEEEecCeeeEEeCCeEEEEE
Q 023516 34 VCQIMLKPQEKVVARPGSMCFMSGSMEMENI 64 (281)
Q Consensus 34 il~v~L~~Ge~v~ae~Gamva~sg~v~~~~~ 64 (281)
+=+|+|+|||.++..+|.+-|+-.++-+++.
T Consensus 157 Ln~v~lkpGe~~fl~Agt~HA~~~G~~lEvm 187 (312)
T COG1482 157 LNRVKLKPGEAFFLPAGTPHAYLKGLVLEVM 187 (312)
T ss_pred hcEEecCCCCEEEecCCCceeeccceEEEEE
Confidence 4468999999999999999999888767764
No 20
>PRK00030 minC septum formation inhibitor; Provisional
Probab=23.28 E-value=6e+02 Score=23.85 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=18.5
Q ss_pred ceEEEEEeCCCCeEEEecCeeeEE
Q 023516 32 AQVCQIMLKPQEKVVARPGSMCFM 55 (281)
Q Consensus 32 ~~il~v~L~~Ge~v~ae~Gamva~ 55 (281)
.++++=.++.||+||++.|.++-+
T Consensus 184 t~ii~~~vRSGQ~Iya~~gDLVVl 207 (292)
T PRK00030 184 ALVITKPLRSGQRVYARHTDLIVI 207 (292)
T ss_pred ceEEeccccCCCEEEecCCCEEEE
Confidence 567888899999999986665544
No 21
>PF03829 PTSIIA_gutA: PTS system glucitol/sorbitol-specific IIA component; InterPro: IPR004716 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families: It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. This family consists only of glucitol-specific transporters, and occur both in Gram-negative and Gram-positive bacteria. The system in Escherichia coli consists of a IIA protein, and a IIBC protein. This family is specific for the IIA component.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2F9H_A.
Probab=23.10 E-value=50 Score=26.64 Aligned_cols=65 Identities=14% Similarity=0.277 Sum_probs=30.0
Q ss_pred EEEeeCCcEEEEEcCCCCEEEEcCCeEEEEcCCeEEEEEEeCceeeeeEecceEEEEEEEe------cEEEEEeccChhH
Q 023516 164 AFILAGGSVVQKNLEVGEVITVDVSCIVAVTSSVNVQIKYNGPIRRAVFGGDNLVTAVVTG------PGIVFIQSLPFHR 237 (281)
Q Consensus 164 v~L~~~G~i~~~~L~~ge~l~Vd~~~~vA~~~~v~~~i~~~~gl~~~~~~GEGl~~~~~~G------~G~V~lqs~~~~~ 237 (281)
++++..++ ...++.+|+.+.++. -+|.|..+|...+.=+.-=|-..++|.| ||.++|....++.
T Consensus 40 ~vih~~~~-~~~~i~~Gd~l~i~~---------~~y~ItaVG~~an~NL~~LGH~Tl~F~g~~~~~lpG~I~l~~~~~p~ 109 (117)
T PF03829_consen 40 CVIHTFNE-LKGDIKPGDTLIIGG---------QEYTITAVGSVANQNLRELGHITLVFDGAEEAELPGTIYLEGKEPPE 109 (117)
T ss_dssp CEEEE-TG-GG----TT-EEEETT---------EEEEEEEE-TTHHHHHHHHS-EEEE-S-SGGGS-TTEEEEES-S---
T ss_pred EEEEecCc-ccCCcCCCCEEEECC---------eEEEEEEEhHHHHHHHHhcCcEEEEECCCCCCCcCCEEEECCCCCCc
Confidence 45555443 334566677777654 3788998875332212222333456666 8999999965544
Q ss_pred H
Q 023516 238 L 238 (281)
Q Consensus 238 l 238 (281)
+
T Consensus 110 i 110 (117)
T PF03829_consen 110 I 110 (117)
T ss_dssp -
T ss_pred C
Confidence 3
No 22
>PRK00794 flbT flagellar biosynthesis repressor FlbT; Reviewed
Probab=21.50 E-value=1.4e+02 Score=24.52 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=0.0
Q ss_pred EEEEeCCCCeEEEecCeeeEEeCCeEEE
Q 023516 35 CQIMLKPQEKVVARPGSMCFMSGSMEME 62 (281)
Q Consensus 35 l~v~L~~Ge~v~ae~Gamva~sg~v~~~ 62 (281)
++++|+|||.|+...--+-. +-+++++
T Consensus 4 Lkl~LKp~ERi~INGAVirn-drr~~l~ 30 (132)
T PRK00794 4 LKLSLKPGERIFINGAVLRN-DRKVSLE 30 (132)
T ss_pred eeEEecCCCEEEEcCeEEEe-CCceEEE
No 23
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=21.20 E-value=1.3e+02 Score=29.33 Aligned_cols=61 Identities=23% Similarity=0.213 Sum_probs=45.1
Q ss_pred CcEEEEEcCCCCE--EEEcCCeEEEEcCCeEEEEEEeCceeeee-EecceEEEEEEEecEEEEEe
Q 023516 170 GSVVQKNLEVGEV--ITVDVSCIVAVTSSVNVQIKYNGPIRRAV-FGGDNLVTAVVTGPGIVFIQ 231 (281)
Q Consensus 170 G~i~~~~L~~ge~--l~Vd~~~~vA~~~~v~~~i~~~~gl~~~~-~~GEGl~~~~~~G~G~V~lq 231 (281)
-.|....++|+|. -.+...+-||-.++..|++.+.--+++.. .-|.|-. .++.||+.+.++
T Consensus 44 Eqvkt~~~~P~eDle~~I~~haKVaL~Pg~~Y~i~~~V~I~~~cYIiGnGA~-V~v~~~~~~~f~ 107 (386)
T PF01696_consen 44 EQVKTYWMEPGEDLEEAIRQHAKVALRPGAVYVIRKPVNIRSCCYIIGNGAT-VRVNGPDRVAFR 107 (386)
T ss_pred EeEEEEEcCCCcCHHHHHHhcCEEEeCCCCEEEEeeeEEecceEEEECCCEE-EEEeCCCCceEE
Confidence 4666778888874 67888899999999999997654455543 4778875 788888777433
No 24
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=20.67 E-value=2.2e+02 Score=19.30 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=13.6
Q ss_pred CCEEEEcCCeEEEEcCCeEEEEEEe
Q 023516 180 GEVITVDVSCIVAVTSSVNVQIKYN 204 (281)
Q Consensus 180 ge~l~Vd~~~~vA~~~~v~~~i~~~ 204 (281)
|+.+.+.++..+-..++....+...
T Consensus 36 ~~~~~l~~Gd~~~i~~~~~H~~~n~ 60 (71)
T PF07883_consen 36 GERVELKPGDAIYIPPGVPHQVRNP 60 (71)
T ss_dssp TEEEEEETTEEEEEETTSEEEEEEE
T ss_pred cEEeEccCCEEEEECCCCeEEEEEC
Confidence 4455555555555555556655444
No 25
>PF07338 DUF1471: Protein of unknown function (DUF1471); InterPro: IPR010854 This entry consists of several hypothetical Enterobacterial proteins of around 90 residues in length. Some of the proteins are annotated as ydgH precursors and contain two copies of this region, one at the N terminus and the other at the C terminus. The function of this family is unknown.; PDB: 2NOC_A 2JNA_B 4EVU_B.
Probab=20.31 E-value=70 Score=22.17 Aligned_cols=34 Identities=9% Similarity=0.166 Sum_probs=25.2
Q ss_pred EEEEEecc--ChhHHHHHHHhhCCCCCccCCCceEEEehh
Q 023516 226 GIVFIQSL--PFHRLSQRIARAVTSPNMRENPKFFVQIAI 263 (281)
Q Consensus 226 G~V~lqs~--~~~~l~~~~~~~lp~~~~~~~~~~~~~~~~ 263 (281)
|.|=+... ++..+.+.|+ .+..+.++++|.++++
T Consensus 6 G~Isvs~~~~s~~d~~~~la----~kAd~~GA~~y~I~~~ 41 (56)
T PF07338_consen 6 GTISVSGNFGSPDDAEEALA----KKADEKGAKYYRITSA 41 (56)
T ss_dssp EEEEEEEECSSHHHHHHHHH----HHHHHTT-SEEEEEEE
T ss_pred EEEEEccccCCHHHHHHHHH----HHHHHcCCCEEEEEEE
Confidence 55555554 7888888888 6788999999999864
Done!