Query 023517
Match_columns 281
No_of_seqs 144 out of 269
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 04:37:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023517.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023517hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3114 Uncharacterized conser 100.0 4.8E-60 1E-64 436.5 21.6 267 6-278 2-277 (290)
2 KOG2946 Uncharacterized conser 99.5 2.7E-13 5.8E-18 121.5 13.5 148 93-261 68-219 (234)
3 KOG3103 Rab GTPase interacting 99.2 5.3E-10 1.1E-14 101.4 12.9 154 93-270 89-245 (249)
4 PF04893 Yip1: Yip1 domain; I 99.1 4.1E-09 8.9E-14 88.2 13.7 152 92-257 1-161 (172)
5 COG5080 YIP1 Rab GTPase intera 98.9 3E-09 6.5E-14 95.1 8.8 138 97-258 70-210 (227)
6 PF03878 YIF1: YIF1; InterPro 98.9 1.4E-08 3E-13 93.3 12.4 157 81-248 32-202 (240)
7 KOG3094 Predicted membrane pro 98.5 9E-06 1.9E-10 75.1 17.0 183 76-270 74-280 (284)
8 COG5197 Predicted membrane pro 98.3 1.2E-05 2.7E-10 72.9 13.1 153 83-247 78-245 (284)
9 PF06930 DUF1282: Protein of u 94.9 0.99 2.1E-05 38.9 13.4 88 160-247 57-148 (170)
10 PF10348 DUF2427: Domain of un 84.4 2.9 6.3E-05 33.8 5.7 88 160-274 15-104 (105)
11 PRK10133 L-fucose transporter; 51.2 2.4E+02 0.0052 27.4 12.3 76 118-195 18-94 (438)
12 PF05924 SAMP: SAMP Motif; In 35.6 28 0.00061 20.3 1.5 17 95-111 1-17 (20)
13 KOG3849 GDP-fucose protein O-f 33.3 26 0.00057 33.6 1.8 50 88-137 82-155 (386)
14 PF05297 Herpes_LMP1: Herpesvi 33.1 14 0.00031 35.5 0.0 15 265-279 152-166 (381)
15 PF00432 Prenyltrans: Prenyltr 27.6 1E+02 0.0022 20.3 3.5 41 95-136 2-42 (44)
16 PF08006 DUF1700: Protein of u 24.8 4.4E+02 0.0096 22.5 8.2 21 85-105 26-52 (181)
17 KOG4783 Uncharacterized conser 24.0 3.2E+02 0.0069 22.2 6.1 22 257-278 70-91 (102)
18 TIGR00885 fucP L-fucose:H+ sym 21.4 7.3E+02 0.016 23.8 11.6 69 125-195 2-71 (410)
19 PF01534 Frizzled: Frizzled/Sm 21.1 7.5E+02 0.016 23.8 11.9 77 169-249 137-214 (328)
20 PF02932 Neur_chan_memb: Neuro 20.9 3.8E+02 0.0082 21.5 6.5 40 209-248 2-49 (237)
21 PRK07668 hypothetical protein; 20.9 2.8E+02 0.0062 26.0 6.2 28 176-203 205-235 (254)
22 KOG1440 CDP-diacylglycerol syn 20.2 9.2E+02 0.02 24.5 11.2 15 125-139 86-100 (432)
No 1
>KOG3114 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4.8e-60 Score=436.46 Aligned_cols=267 Identities=39% Similarity=0.676 Sum_probs=237.7
Q ss_pred CCcccCCCCCccccCCCCCCCCccccccCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-ccccCCCceeeee
Q 023517 6 NYTSIDNQKLSGSVPAVPDPGQVTVKFSDSNLQTFPPSDTRGKISGVSGPPSDVDDTFSKPASGSS-DEAQSSGWFRAFT 84 (281)
Q Consensus 6 ~y~~~~~~~~~~sv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~g~~~~~s 84 (281)
+++-++.++.+|++|+.++..++....++. +|+...++..|+.+.+.++++.|.++..... +++|.+.+.++|+
T Consensus 2 ~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~g~~~G~~~~~~~~~~~~~~~~~~~~~~sqq~~~~~~~~t 76 (290)
T KOG3114|consen 2 NLTFLDFDDVSGGFEDNPDAGGPNVIDTEY-----DPSARSGSTVGGGSDEYNEQGGFDDSKATWLLQSQQVSDQLSFFT 76 (290)
T ss_pred CcchhhccccccccccCCCCCCCcccCCCC-----CCccCcCCcCCCCcccccccccccCCCcccccccccccCCccccc
Confidence 478899999999999999888887766665 6777777777777778788888888876543 4555666678999
Q ss_pred ecccccCcCCChHHHHHHHhhcccCCCCCcccccCCCCCcchhHHHHHHHHHHHHHHhhHHHHhhhccCCc-ceeEEecc
Q 023517 85 VAAYKPYFDVDTSDVLERIKDSLFPFRDTFTEKTSDNPDLYGPFWICSTLIFVAASIGTFVTYISHKVNNK-DWNYDINL 163 (281)
Q Consensus 85 i~yY~~yFdVdT~~V~~Rl~~sl~P~k~~f~e~~~~~pDLYGPfWI~~TLIf~lai~gnl~~yl~~~~~~~-~~~ydf~~ 163 (281)
++||||||||||.||++||+.||+| ++.+.+.++.|||||||||||+||||+++++||+.+||++...+. +|.|||++
T Consensus 77 i~yyq~fFdVDt~qV~~Rl~~SliP-~~~~~~~~~~~PDLYGPfWI~~TlVf~l~~~g~~~~~i~~~t~~g~~~g~~f~~ 155 (290)
T KOG3114|consen 77 IEYYQPFFDVDTAQVRKRLKESLIP-RNYVRDQIQDNPDLYGPFWITATLVFALAISGNLATFIRNGTLKGTAYGYDFGL 155 (290)
T ss_pred HHhhccccCCCHHHHHHHHHHhcCC-ccccccccCCCccccccHHHHHHHHHHHHHcccHHHHHHhccccceeeecccch
Confidence 9999999999999999999999999 555678899999999999999999999999999999999987755 89999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcCC-----CchhhhHhhhccccchhHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q 023517 164 VPWSAGLFYGYVTIVPLCLYIILKYFSAP-----SGLVQLFCLYGYSLFVFIPALCLSVVPLEIFRWVIAGVAGFMSATF 238 (281)
Q Consensus 164 v~~A~~liygY~~lvPlil~~~lk~~~~~-----~sl~~liclYGYSl~i~IPvsiL~vip~~~lrWviv~~~~~~S~~f 238 (281)
+++|+++||+|++++|+++|.+++|++.. .++.|++|+||||+++|||+.+++++|+.++||++++.++..|+.|
T Consensus 156 v~saa~~iy~Y~~ivp~~l~~iL~~~~~~~~~~~~~l~~~~~iygysl~i~ip~~vl~iv~~~~~~wvl~~~~~~~S~~~ 235 (290)
T KOG3114|consen 156 VTSAATLIYGYLTIVPLALWGILSWNGYSLLLHCYVLLELVCIYGYSLFIFIPLLVLWIVPSSMVQWVLVGTALGLSGTF 235 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccccceehhhHHHHHhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999998832 5789999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhcCc--chhHHHHHHHHHHHHHHHHHHHHhcc
Q 023517 239 VALNLRAHIKSAGE--RWFLIVAAIFLLQLALAVALKIYLFT 278 (281)
Q Consensus 239 l~~nl~~~i~~~~~--r~~li~~~i~~lh~~lal~~K~yFF~ 278 (281)
|..++++..+++.. +..++++.++++|+++|+++|+|||.
T Consensus 236 L~~~l~p~~~~~~~~~~a~~~iv~ivllh~lla~~~~lyfF~ 277 (290)
T KOG3114|consen 236 LAGTLWPAVRLDGILHFAFLLIVEIVLLHLLLALGFKLYFFD 277 (290)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhccceeEEec
Confidence 99999999988762 34566778899999999999999997
No 2
>KOG2946 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=2.7e-13 Score=121.53 Aligned_cols=148 Identities=19% Similarity=0.315 Sum_probs=114.8
Q ss_pred CCChHHHHHHHhhcccCCCCCcc--cccCCCCCcchhHHHHHHHHHHHHHHhhHHHHhhhccCCcceeEEecchhhHHHH
Q 023517 93 DVDTSDVLERIKDSLFPFRDTFT--EKTSDNPDLYGPFWICSTLIFVAASIGTFVTYISHKVNNKDWNYDINLVPWSAGL 170 (281)
Q Consensus 93 dVdT~~V~~Rl~~sl~P~k~~f~--e~~~~~pDLYGPfWI~~TLIf~lai~gnl~~yl~~~~~~~~~~ydf~~v~~A~~l 170 (281)
+-|-.+|..|+++.++|.. .|. .+..+.+|||||+-+|+-+.+++..++. .++. --++.
T Consensus 68 krD~~~I~~kl~~Vl~P~p-y~~dk~~~lRDwDlWGPl~~~~~la~iL~~s~~----------~~~~--------~vFs~ 128 (234)
T KOG2946|consen 68 KRDLRAIGSKLKHVLYPHP-YFEDKGQLLRDWDLWGPLFFCVFLALILSLSGS----------VKSA--------SVFAV 128 (234)
T ss_pred HHHHHHHHhceEEEEccCC-CcccccceeecccccchhHHHHHHHHHHHhhcC----------cccc--------hhHHH
Confidence 4577889999999999962 222 2356788999999999998888776553 1111 26778
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCchhhhHhhhccccchhHHHH-hhhhc-hhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 023517 171 FYGYVTIVPLCLYIILKYFSAPSGLVQLFCLYGYSLFVFIPAL-CLSVV-PLEIFRWVIAGVAGFMSATFVALNLRAHIK 248 (281)
Q Consensus 171 iygY~~lvPlil~~~lk~~~~~~sl~~liclYGYSl~i~IPvs-iL~vi-p~~~lrWviv~~~~~~S~~fl~~nl~~~i~ 248 (281)
++..+|.+.+++++..|.+|.+.+++|.+|+.|||+++....+ +.|.. +...+|-++..+|.+||.+.-...+.....
T Consensus 129 vf~i~wfG~~vvtln~kLLGgnIs~fQsl~IlGYCLfPl~v~ali~~~~~~l~~lr~vv~~~~~~WSsyaa~~~l~~~~~ 208 (234)
T KOG2946|consen 129 VFAILWFGAVVVTLNIKLLGGNISFFQSLCILGYCLFPLVVAALIICLFRDLFFLRLVVTSIGLAWSSYAAMGFLSISQL 208 (234)
T ss_pred HHHHHHHHHHHHHHHHHHhCCceeEEeehhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc
Confidence 8999999999999999999999999999999999999999886 56665 667899999999999998776655544433
Q ss_pred hcCcchhHHHHHH
Q 023517 249 SAGERWFLIVAAI 261 (281)
Q Consensus 249 ~~~~r~~li~~~i 261 (281)
++||.+.+-.+
T Consensus 209 --~~kk~LavYPv 219 (234)
T KOG2946|consen 209 --PRKKLLAVYPV 219 (234)
T ss_pred --ccccceehhhH
Confidence 55665544333
No 3
>KOG3103 consensus Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=5.3e-10 Score=101.43 Aligned_cols=154 Identities=17% Similarity=0.322 Sum_probs=112.6
Q ss_pred CCChHHHHHHHhhcccCCCCCcccccCCCCCcchhHHHHHHHHHHHHHHhhHHHHhhhccCCcceeEEecchhhHHHHHH
Q 023517 93 DVDTSDVLERIKDSLFPFRDTFTEKTSDNPDLYGPFWICSTLIFVAASIGTFVTYISHKVNNKDWNYDINLVPWSAGLFY 172 (281)
Q Consensus 93 dVdT~~V~~Rl~~sl~P~k~~f~e~~~~~pDLYGPfWI~~TLIf~lai~gnl~~yl~~~~~~~~~~ydf~~v~~A~~liy 172 (281)
++|-+++.+|.+..++|+|..= ..+.+++||.||+-.|..+-..+...| +.++.| ||
T Consensus 89 gInf~hI~~KT~~VLnP~r~~~-q~i~~d~DlaGPlvf~L~f~~flLl~g-----------Ki~Fgy-----------Iy 145 (249)
T KOG3103|consen 89 GINFDHIKQKTRAVLNPFRSAD-QSIMKDTDLAGPLVFCLLFGLFLLLAG-----------KIHFGY-----------IY 145 (249)
T ss_pred CCCHHHHHHHHhheecccccCc-eEEecCcccccchHHHHHHHHHHHhcC-----------ceEEEE-----------Ee
Confidence 5889999999999999988642 347889999999888876654444322 223443 68
Q ss_pred HHHHHHHHHHHHHHHHhc-CCCchhhhHhhhccccchhHHHHhhhhc-hh-HHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 023517 173 GYVTIVPLCLYIILKYFS-APSGLVQLFCLYGYSLFVFIPALCLSVV-PL-EIFRWVIAGVAGFMSATFVALNLRAHIKS 249 (281)
Q Consensus 173 gY~~lvPlil~~~lk~~~-~~~sl~~liclYGYSl~i~IPvsiL~vi-p~-~~lrWviv~~~~~~S~~fl~~nl~~~i~~ 249 (281)
|.+.+..+-++.+++.++ .+.++.++.++.|||+.+.+..|.+.++ +. ..++.++.+++.+||+..-..-+-..+ +
T Consensus 146 gi~~~gsl~iy~L~nlm~~~nv~f~~~aSVlGYcLLPlvvlS~v~i~~~~~g~vg~il~~~~v~W~t~aaS~lfv~al-~ 224 (249)
T KOG3103|consen 146 GISLLGSLSIYFLLNLMSNKNVSFGCVASVLGYCLLPLVVLSFVNIFVGLQGTVGYILSALFVLWCTYAASKLFVSAL-S 224 (249)
T ss_pred eeHHHHHHHHHHHHHHHhhcCcceeeehHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHh-h
Confidence 888999999999999998 6789999999999999988888887665 33 578888888888898775544444433 3
Q ss_pred cCcchhHHHHHHHHHHHHHHH
Q 023517 250 AGERWFLIVAAIFLLQLALAV 270 (281)
Q Consensus 250 ~~~r~~li~~~i~~lh~~lal 270 (281)
-++++.++.-.++++--++++
T Consensus 225 ~~~~rlLiaYp~~l~Y~~Fal 245 (249)
T KOG3103|consen 225 MENQRLLVAYPCALLYGVFAL 245 (249)
T ss_pred ccccchhhhhHHHHHHhhhee
Confidence 345555554444444444443
No 4
>PF04893 Yip1: Yip1 domain; InterPro: IPR006977 This entry contains proteins belonging to the Yip1 family and represents the Yip1 domain. The Yip1 integral membrane domain contains four transmembrane alpha helices. The domain is characterised by the motifs DLYGP and GY. The Yip1 protein is a golgi protein involved in vesicular transport that interacts with GTPases [].; GO: 0016020 membrane
Probab=99.06 E-value=4.1e-09 Score=88.25 Aligned_cols=152 Identities=17% Similarity=0.146 Sum_probs=105.8
Q ss_pred cCCChHHHHHHHhhcccCCCCCcccccCCCCCcchhHHHHHHHHHHHHHHhhHHHHhhhccCCcceeEEecchhhHH---
Q 023517 92 FDVDTSDVLERIKDSLFPFRDTFTEKTSDNPDLYGPFWICSTLIFVAASIGTFVTYISHKVNNKDWNYDINLVPWSA--- 168 (281)
Q Consensus 92 FdVdT~~V~~Rl~~sl~P~k~~f~e~~~~~pDLYGPfWI~~TLIf~lai~gnl~~yl~~~~~~~~~~ydf~~v~~A~--- 168 (281)
+.+++++..+|+++.-. .++++|+|+++|+..++++.+....+...++.+.. +..+.+......
T Consensus 1 vl~~P~~~f~~~~~~~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 67 (172)
T PF04893_consen 1 VLFSPREFFRRLRESPR---------ISKSWWLPLLLVILLTLVFGLLSSLNIPWYVDSGG----SAYMFSFGSLLGSII 67 (172)
T ss_pred CccCHHHHHHHHHhccc---------cchhHHHHHHHHHHHHHHHHHHHHHhhhhhhccch----hhhhhhhHHHHHHHH
Confidence 35788888888887542 35679999999999999999998877666665431 112222222222
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHhcCCCchhhhHhhhccccchhHHHHhhhhchhHH---HHHHHHHHHHHHHHHHHHHH
Q 023517 169 ---GLFYGYVTIVPLCLYIILKYFSAPSGLVQLFCLYGYSLFVFIPALCLSVVPLEI---FRWVIAGVAGFMSATFVALN 242 (281)
Q Consensus 169 ---~liygY~~lvPlil~~~lk~~~~~~sl~~liclYGYSl~i~IPvsiL~vip~~~---lrWviv~~~~~~S~~fl~~n 242 (281)
.....-.++.+.++|.+.|.+|.+.++.|.+|++|||.++.+...+++.+.... +...+..++.+|+..-+..-
T Consensus 68 ~~~~~~~i~~~i~~~~~~~~~~~~gg~~~~~~~~~~~~ya~~P~~~~~~~~~~~~~~~~~~~~~~~~l~~iw~~~l~~~g 147 (172)
T PF04893_consen 68 GGFIIILIGWFILALILHLIAKLFGGKGSFKETFSVVGYALIPLLLGSLISIILSLFFGPLSLLVIILFSIWSAYLLVIG 147 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222355667788999999999999999999999999998888888877764432 33456667888888766666
Q ss_pred hhhhhhhcCcchhHH
Q 023517 243 LRAHIKSAGERWFLI 257 (281)
Q Consensus 243 l~~~i~~~~~r~~li 257 (281)
++..- +.++++..+
T Consensus 148 l~~~~-~~~~~ka~~ 161 (172)
T PF04893_consen 148 LREVH-RLSRGKAFL 161 (172)
T ss_pred HHHHh-CCChhHHHH
Confidence 65443 334444433
No 5
>COG5080 YIP1 Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking and secretion]
Probab=98.95 E-value=3e-09 Score=95.10 Aligned_cols=138 Identities=20% Similarity=0.334 Sum_probs=96.2
Q ss_pred HHHHHHHhhcccCCCCCcccccCCCCCcchhHHHHHHHHHHHHHHhhHHHHhhhccCCcceeEEecchhhHHHHHHHHHH
Q 023517 97 SDVLERIKDSLFPFRDTFTEKTSDNPDLYGPFWICSTLIFVAASIGTFVTYISHKVNNKDWNYDINLVPWSAGLFYGYVT 176 (281)
Q Consensus 97 ~~V~~Rl~~sl~P~k~~f~e~~~~~pDLYGPfWI~~TLIf~lai~gnl~~yl~~~~~~~~~~ydf~~v~~A~~liygY~~ 176 (281)
..++++....+.|++..- .++.+|.|||||+-.+ +.+.++. ...+ +. -++.+|+-.+
T Consensus 70 ~~i~~ks~~vl~p~~~~~-~~i~~d~DL~gPliF~--lL~sLfL--------sla~-~s-----------hFgyiy~isl 126 (227)
T COG5080 70 GHIKSKSDDVLGPFDNKA-FDILADCDLWGPLIFI--LLYSLFL--------SLAG-KS-----------HFGYIYGISL 126 (227)
T ss_pred cccccccceeeecccccc-hhhhhcccccccHHHH--HHHHHHH--------Hhcc-cc-----------eeehhhHHHH
Confidence 456777778888876521 2478899999996443 3344443 2222 12 2345799999
Q ss_pred HHHHHHHHHHHHhc-CCCchhhhHhhhccccchhHHHHhhhhc-h-hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcc
Q 023517 177 IVPLCLYIILKYFS-APSGLVQLFCLYGYSLFVFIPALCLSVV-P-LEIFRWVIAGVAGFMSATFVALNLRAHIKSAGER 253 (281)
Q Consensus 177 lvPlil~~~lk~~~-~~~sl~~liclYGYSl~i~IPvsiL~vi-p-~~~lrWviv~~~~~~S~~fl~~nl~~~i~~~~~r 253 (281)
.+-+.+.+.+|.+| .+.+++|.+|+.|||+++.+..+++|.+ + +.+.--++++++.+||.+...-.+.+.++ .+++
T Consensus 127 fg~lsl~~~lrLl~~~ni~f~~~~SIlGYs~lPlv~~slv~~i~~~i~i~~~vv~~l~~~Ws~~AaS~v~~~~l~-l~n~ 205 (227)
T COG5080 127 FGTLSLHLLLRLLGHKNISFFSTISILGYSLLPLVFNSLVSIILGRILILGYVVVALFLIWSTYAASGVLKSKLQ-LSNK 205 (227)
T ss_pred HHHHHHHHHHHHhccCceeeeehhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhH
Confidence 99999999999999 5689999999999999999999999987 2 33444556666778887766555544332 3465
Q ss_pred hhHHH
Q 023517 254 WFLIV 258 (281)
Q Consensus 254 ~~li~ 258 (281)
+++++
T Consensus 206 ~llv~ 210 (227)
T COG5080 206 RLLVV 210 (227)
T ss_pred HHHHH
Confidence 65554
No 6
>PF03878 YIF1: YIF1; InterPro: IPR005578 This family includes a number of eukaryotic proteins. It is an integral membrane protein, conserved in at least 1 copy in all sequenced eukaryotes. The gene name in Schizosaccharomyces pombe (Fission yeast) is hrf1+ for Heavy metal Resistance Factor 1.
Probab=98.92 E-value=1.4e-08 Score=93.26 Aligned_cols=157 Identities=24% Similarity=0.323 Sum_probs=111.7
Q ss_pred eeeeecccccCcCCChHHHHHHHhhcccCCCCC-cc-----------cccCCCCCcchhHHHHHHHHHHHHHHhhHHHHh
Q 023517 81 RAFTVAAYKPYFDVDTSDVLERIKDSLFPFRDT-FT-----------EKTSDNPDLYGPFWICSTLIFVAASIGTFVTYI 148 (281)
Q Consensus 81 ~~~si~yY~~yFdVdT~~V~~Rl~~sl~P~k~~-f~-----------e~~~~~pDLYGPfWI~~TLIf~lai~gnl~~yl 148 (281)
.+.+.+-.|.|||||++=|++||+--+.|+... .. ...-.-||||=|..-..|-|.+.+..-. +
T Consensus 32 ~~~~~~~lk~YF~V~n~YV~~KL~lllfPf~~k~W~r~~~~~~~~~Pr~DvNAPDLYIPlMa~vTYiLl~g~~~G----~ 107 (240)
T PF03878_consen 32 RYVSVSSLKYYFAVDNSYVLKKLKLLLFPFLHKDWSRKYEQESYLPPREDVNAPDLYIPLMAFVTYILLSGLILG----L 107 (240)
T ss_pred hhcCcccceeeEECCHHHHHHHHHHeecccccCCccccccccCCCCchhhccCcccccchHHHHHHHHHHHHHHH----h
Confidence 445566789999999999999999999997432 10 0112359999999999999887654332 1
Q ss_pred hhccCCcceeEEecchhhHHHHHHHHHHHHHHHHHHHHHHhcC--CCchhhhHhhhccccchhHHHHhhhhchhHHHHHH
Q 023517 149 SHKVNNKDWNYDINLVPWSAGLFYGYVTIVPLCLYIILKYFSA--PSGLVQLFCLYGYSLFVFIPALCLSVVPLEIFRWV 226 (281)
Q Consensus 149 ~~~~~~~~~~ydf~~v~~A~~liygY~~lvPlil~~~lk~~~~--~~sl~~liclYGYSl~i~IPvsiL~vip~~~lrWv 226 (281)
+ .+++=+.+...++-..+..++==++++..+..++. +.++.|++|.-||.-+.-|.+.+...+--.+.-|+
T Consensus 108 ~-------g~F~Pe~Lg~~~s~al~~~~lEv~i~k~~~y~l~~~~~~~~lDlvay~GYKfv~ii~~~l~~~l~~~~~yy~ 180 (240)
T PF03878_consen 108 Q-------GRFSPELLGIQASSALVWWFLEVLIIKLGLYLLNISSSLPILDLVAYSGYKFVGIILTLLASLLFGSWVYYI 180 (240)
T ss_pred c-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhcchHHHHHHHHHHHHHcccHHHHH
Confidence 1 12233455556666666666656667777766776 67999999999999876665555544444477888
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh
Q 023517 227 IAGVAGFMSATFVALNLRAHIK 248 (281)
Q Consensus 227 iv~~~~~~S~~fl~~nl~~~i~ 248 (281)
..+...+..+.|+++.++..+-
T Consensus 181 ~~ly~~~a~~~Fl~RsLk~~i~ 202 (240)
T PF03878_consen 181 ALLYTSFANAFFLLRSLKRVIL 202 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888889999998877654
No 7
>KOG3094 consensus Predicted membrane protein [Function unknown]
Probab=98.50 E-value=9e-06 Score=75.14 Aligned_cols=183 Identities=20% Similarity=0.251 Sum_probs=106.6
Q ss_pred CCCceeeeeecccccCcCCChHHHHHHHhhcccCCCC-Ccc---c--------ccCCCCCcchhHHHHHHHHHHHHHHhh
Q 023517 76 SSGWFRAFTVAAYKPYFDVDTSDVLERIKDSLFPFRD-TFT---E--------KTSDNPDLYGPFWICSTLIFVAASIGT 143 (281)
Q Consensus 76 ~~g~~~~~si~yY~~yFdVdT~~V~~Rl~~sl~P~k~-~f~---e--------~~~~~pDLYGPfWI~~TLIf~lai~gn 143 (281)
+++..+.++..-.+-||+||+.=|.+||+--+.|+.. +.. | ..-..||||=|..--+|=|.+....-.
T Consensus 74 ~~~~~k~~~~~~l~yYF~Vdn~YV~~KL~lilfPf~hk~W~~~~~~~~~~PPr~DvNaPDLYiP~MafiTYIll~gl~lG 153 (284)
T KOG3094|consen 74 EKNLGKYVSVPKLKYYFAVDNAYVGKKLKLILFPFLHKDWTRIYERESPLPPRYDVNAPDLYIPLMAFITYILLAGLLLG 153 (284)
T ss_pred HHHhhhhccCccceEEEEechHHHhhhheEEEeeecCcchhhhhcccCCCCccccCCCcchhhhHHHHHHHHHHHHHHhh
Confidence 3333444555556778999999999999999999743 221 1 124579999999999988876543221
Q ss_pred HHHHhhhccCCcceeEEecchhhHHHHHHHHHHHHHHHHHHHHHH-hcC--CCchhhhHhhhccccchhHHHHhhhhchh
Q 023517 144 FVTYISHKVNNKDWNYDINLVPWSAGLFYGYVTIVPLCLYIILKY-FSA--PSGLVQLFCLYGYSLFVFIPALCLSVVPL 220 (281)
Q Consensus 144 l~~yl~~~~~~~~~~ydf~~v~~A~~liygY~~lvPlil~~~lk~-~~~--~~sl~~liclYGYSl~i~IPvsiL~vip~ 220 (281)
++.+-+ =+.+.+-++--..++++ =+++..+..| +++ ..+.++++|.-||-.+..|.+.+.-.+-.
T Consensus 154 ----lqg~Fs-------PE~Lg~~~s~al~~v~l-e~l~l~l~lY~l~vs~~ls~ldllAysGYKfv~liL~~L~k~~~~ 221 (284)
T KOG3094|consen 154 ----LQGRFS-------PEALGILASKALAWVIL-EVLLLKLGLYLLNVSSSLSTLDLLAYSGYKFVGLILAQLTKLLFG 221 (284)
T ss_pred ----hccCCC-------HHHHHHHHHHHHHHHHH-HHHHHHHHHheecccCCcchhHhhhhcccchHHHHHHHHhhheec
Confidence 222211 12222233322333332 3333334444 454 67899999999999988887776655533
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----c----CcchhHHHHHHHHHHHHHHH
Q 023517 221 EIFRWVIAGVAGFMSATFVALNLRAHIKS-----A----GERWFLIVAAIFLLQLALAV 270 (281)
Q Consensus 221 ~~lrWviv~~~~~~S~~fl~~nl~~~i~~-----~----~~r~~li~~~i~~lh~~lal 270 (281)
.+...++.+.-.+.-+.|+++.++..+-. + .+|+...+..+++.|..++.
T Consensus 222 ~~~yyi~~~yt~~a~gvFLlRSlK~~ll~~~~~~~~v~q~~r~~YfLf~ia~~Q~~~l~ 280 (284)
T KOG3094|consen 222 PYGYYIALAYTYLAFGVFLLRSLKRALLAESSMADPVPQSSRRLYFLFFIAAVQFLILY 280 (284)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCccchhhhhHHHHHHHHHHHHHHHH
Confidence 33444444433334466888887766521 1 12343344445555655543
No 8
>COG5197 Predicted membrane protein [Function unknown]
Probab=98.32 E-value=1.2e-05 Score=72.86 Aligned_cols=153 Identities=21% Similarity=0.290 Sum_probs=90.3
Q ss_pred eeecccccCcCCChHHHHHHHhhcccCCCCC-cc-----------cccCCCCCcchhHHHHHHHHHHHHHHhhHHHHhhh
Q 023517 83 FTVAAYKPYFDVDTSDVLERIKDSLFPFRDT-FT-----------EKTSDNPDLYGPFWICSTLIFVAASIGTFVTYISH 150 (281)
Q Consensus 83 ~si~yY~~yFdVdT~~V~~Rl~~sl~P~k~~-f~-----------e~~~~~pDLYGPfWI~~TLIf~lai~gnl~~yl~~ 150 (281)
.+..-.+-|||||++=|++|++--+.|+++. .. .+....||+|=|..-.+|-|.+...-.. |+.
T Consensus 78 ~s~~~~~tYF~V~n~yVi~KL~LIlfPf~nk~W~r~gd~eg~~pp~~d~nsPdmY~P~M~fvtyILl~~~~~G----L~g 153 (284)
T COG5197 78 ASSQQISTYFQVSNRYVINKLKLILFPFLNKNWQRIGDSEGFLPPRDDVNSPDMYMPIMGFVTYILLWNTQQG----LKG 153 (284)
T ss_pred ccccceeEEEEechHhHHhhhheEEeecccchhhhccCCCCCCCchhhcCCccccchHHHHHHHHHHHHHHhh----ccc
Confidence 4556678899999999999999999998652 21 1234689999999999998887665332 221
Q ss_pred ccCCcceeEEecchhhHHHHHHHHHHHHHHHHHHHHHH---hcCCCchhhhHhhhccccchhHHHHhhhhchhHHHHHHH
Q 023517 151 KVNNKDWNYDINLVPWSAGLFYGYVTIVPLCLYIILKY---FSAPSGLVQLFCLYGYSLFVFIPALCLSVVPLEIFRWVI 227 (281)
Q Consensus 151 ~~~~~~~~ydf~~v~~A~~liygY~~lvPlil~~~lk~---~~~~~sl~~liclYGYSl~i~IPvsiL~vip~~~lrWvi 227 (281)
.-+.+ |+.+....+.. .+ ++-+++.-+--| .+...+++|++|.-||-.++.|...++-.+...|..=++
T Consensus 154 ~F~PE----~lg~~~s~~~a---~v-~v~~l~trlg~Yll~~s~~~~~ldllaysGYKfV~liL~qL~k~~~Mp~v~~i~ 225 (284)
T COG5197 154 SFNPE----DLGYKLSSTLA---FV-CVDLLITRLGLYLLIDSKIPSFLDLLAYSGYKFVPLILAQLLKNVTMPFVLNIL 225 (284)
T ss_pred CCCHH----HhhHHHHHHHH---HH-HHHHHHHHhceEEEeecccchhhhhhhhcccccHHHHHHHHhhhccccHHHHHH
Confidence 11111 22322222211 11 222222222222 234467899999999999887777776554433333333
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 023517 228 AGVAGFMSATFVALNLRAHI 247 (281)
Q Consensus 228 v~~~~~~S~~fl~~nl~~~i 247 (281)
...--+.-+.|+.+.++-.+
T Consensus 226 ~~Ylyiaf~vFLlRSlK~~v 245 (284)
T COG5197 226 IFYLYIAFGVFLLRSLKFNV 245 (284)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33333334557777665443
No 9
>PF06930 DUF1282: Protein of unknown function (DUF1282); InterPro: IPR009698 This entry represents several hypothetical proteins of around 200 residues in length. The function of is unknown although a number of the members are thought to be putative membrane proteins.
Probab=94.94 E-value=0.99 Score=38.89 Aligned_cols=88 Identities=13% Similarity=0.144 Sum_probs=61.0
Q ss_pred EecchhhHHHHHHHHHHH-HHHHHHH---HHHHhcCCCchhhhHhhhccccchhHHHHhhhhchhHHHHHHHHHHHHHHH
Q 023517 160 DINLVPWSAGLFYGYVTI-VPLCLYI---ILKYFSAPSGLVQLFCLYGYSLFVFIPALCLSVVPLEIFRWVIAGVAGFMS 235 (281)
Q Consensus 160 df~~v~~A~~liygY~~l-vPlil~~---~lk~~~~~~sl~~liclYGYSl~i~IPvsiL~vip~~~lrWviv~~~~~~S 235 (281)
+.+........+.+|.++ +.+.-++ +.|-.+.+.++-|++-..||+.++.....++..+|..|+--....++..++
T Consensus 57 ~~~~~~~~~~~~~~~~~~gv~i~a~~i~~~~~~~~~~~s~~~~~~~a~y~~tPl~L~~i~~~~~~~~l~~~~~~~~~~~~ 136 (170)
T PF06930_consen 57 KLTLASALIIAVIFYIFGGVFIMAYLIHWMMKTFGGRPSYKKCLAFAAYAATPLFLGGIVNLYPSLWLTLLVGLIALIYS 136 (170)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555556555 4444443 444456778899999999999999988888888888766555556777888
Q ss_pred HHHHHHHhhhhh
Q 023517 236 ATFVALNLRAHI 247 (281)
Q Consensus 236 ~~fl~~nl~~~i 247 (281)
...++.-+....
T Consensus 137 ~~Lly~Gv~~~~ 148 (170)
T PF06930_consen 137 VYLLYLGVPIFM 148 (170)
T ss_pred HHHHHHHHHHHh
Confidence 887777664443
No 10
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=84.38 E-value=2.9 Score=33.82 Aligned_cols=88 Identities=16% Similarity=0.218 Sum_probs=53.5
Q ss_pred EecchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhHhhhccccchhHHHHhhhhchhHHHHHHHHHHHHHHHHHHH
Q 023517 160 DINLVPWSAGLFYGYVTIVPLCLYIILKYFSAPSGLVQLFCLYGYSLFVFIPALCLSVVPLEIFRWVIAGVAGFMSATFV 239 (281)
Q Consensus 160 df~~v~~A~~liygY~~lvPlil~~~lk~~~~~~sl~~liclYGYSl~i~IPvsiL~vip~~~lrWviv~~~~~~S~~fl 239 (281)
|--+..+.+....+++++.|+.+-+. -.+++ +-+|...+.+++..+|.+....+-
T Consensus 15 ~~~l~~Hi~lm~la~~il~Pi~lvL~--~~~sr-----------------------~~~~~q~~~~~l~~~g~~~g~~~~ 69 (105)
T PF10348_consen 15 RSALYAHIVLMTLAWVILYPIGLVLG--NARSR-----------------------WHLPVQTVFLVLMILGLFLGSVYN 69 (105)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH--Hccch-----------------------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566778888888888888887532 22221 234555566666666655554433
Q ss_pred HHHhhhhh-h-hcCcchhHHHHHHHHHHHHHHHHHHH
Q 023517 240 ALNLRAHI-K-SAGERWFLIVAAIFLLQLALAVALKI 274 (281)
Q Consensus 240 ~~nl~~~i-~-~~~~r~~li~~~i~~lh~~lal~~K~ 274 (281)
.-.|++ + ++-.|...++..+.++|.++++..|+
T Consensus 70 --~~~p~lyp~n~H~k~g~il~~l~~~q~~~gv~~~~ 104 (105)
T PF10348_consen 70 --GSTPDLYPNNAHGKMGWILFVLMIVQVILGVILKL 104 (105)
T ss_pred --cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 223333 1 11234456667778899999999885
No 11
>PRK10133 L-fucose transporter; Provisional
Probab=51.15 E-value=2.4e+02 Score=27.39 Aligned_cols=76 Identities=18% Similarity=0.261 Sum_probs=41.2
Q ss_pred cCCCCCcchhHHHHHHHHHHHHHHhhHHHHhhhccCCcceeEEecchhhHHHHHH-HHHHHHHHHHHHHHHHhcCCCch
Q 023517 118 TSDNPDLYGPFWICSTLIFVAASIGTFVTYISHKVNNKDWNYDINLVPWSAGLFY-GYVTIVPLCLYIILKYFSAPSGL 195 (281)
Q Consensus 118 ~~~~pDLYGPfWI~~TLIf~lai~gnl~~yl~~~~~~~~~~ydf~~v~~A~~liy-gY~~lvPlil~~~lk~~~~~~sl 195 (281)
...+++-+.|++..+++-|+.++.-+..+.+...- .++++.|-.......+.++ +|.+..| ..-.+...+|.+..+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~~-~~g~l~dr~G~r~~l 94 (438)
T PRK10133 18 AGQSRSYIIPFALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPI-PAGILMKKLSYKAGI 94 (438)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCcHHHH
Confidence 34456778899999998888787766665543322 1123333333433433333 3333333 344445555665444
No 12
>PF05924 SAMP: SAMP Motif; InterPro: IPR009224 This short region is found repeated in the mid region of the adenomatous polyposis proteins (APCs). This motif binds axin [].; GO: 0008013 beta-catenin binding, 0016055 Wnt receptor signaling pathway; PDB: 1EMU_B 2RQU_B.
Probab=35.62 E-value=28 Score=20.27 Aligned_cols=17 Identities=29% Similarity=0.501 Sum_probs=11.2
Q ss_pred ChHHHHHHHhhcccCCC
Q 023517 95 DTSDVLERIKDSLFPFR 111 (281)
Q Consensus 95 dT~~V~~Rl~~sl~P~k 111 (281)
|.+|++++++.|-+|.+
T Consensus 1 d~deiL~~CI~sAmPk~ 17 (20)
T PF05924_consen 1 DEDEILQECIGSAMPKR 17 (20)
T ss_dssp --HHHHHHHHHCTS---
T ss_pred CHHHHHHHHHHHhcccc
Confidence 34699999999999965
No 13
>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=33.30 E-value=26 Score=33.61 Aligned_cols=50 Identities=26% Similarity=0.643 Sum_probs=27.5
Q ss_pred cccCcCCCh----------HHHHHHHhhcccCCCC--Ccc--cccCCCCC----------cchhHHHHHHHHHH
Q 023517 88 YKPYFDVDT----------SDVLERIKDSLFPFRD--TFT--EKTSDNPD----------LYGPFWICSTLIFV 137 (281)
Q Consensus 88 Y~~yFdVdT----------~~V~~Rl~~sl~P~k~--~f~--e~~~~~pD----------LYGPfWI~~TLIf~ 137 (281)
|+.||+|.+ .|+.++|....+|-.+ .+. +..++.|| =+||||=..-+-|+
T Consensus 82 f~~yF~vepl~~YhRVitm~dFm~klapthwp~~~Rva~c~k~a~qr~pdkp~Ch~KeGNPFGPfWDqfhvsFv 155 (386)
T KOG3849|consen 82 FEFYFQVEPLAKYHRVITMQDFMKKLAPTHWPGTPRVAICDKSAAQRSPDKPGCHSKEGNPFGPFWDQFHVSFV 155 (386)
T ss_pred hhheeecccHhhhhhheeHHHHHHHhCcccCCCCcceeeeehhhhccCCCCCCCcccCCCCCCCchhheEeeee
Confidence 555566555 4556666666666332 222 11222232 39999988766664
No 14
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=33.15 E-value=14 Score=35.50 Aligned_cols=15 Identities=40% Similarity=0.476 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcce
Q 023517 265 QLALAVALKIYLFTV 279 (281)
Q Consensus 265 h~~lal~~K~yFF~~ 279 (281)
-++.|+.++...|++
T Consensus 152 lLIIAv~L~qaWfT~ 166 (381)
T PF05297_consen 152 LLIIAVLLHQAWFTI 166 (381)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 445566666666654
No 15
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=27.58 E-value=1e+02 Score=20.33 Aligned_cols=41 Identities=12% Similarity=0.217 Sum_probs=29.0
Q ss_pred ChHHHHHHHhhcccCCCCCcccccCCCCCcchhHHHHHHHHH
Q 023517 95 DTSDVLERIKDSLFPFRDTFTEKTSDNPDLYGPFWICSTLIF 136 (281)
Q Consensus 95 dT~~V~~Rl~~sl~P~k~~f~e~~~~~pDLYGPfWI~~TLIf 136 (281)
|-+++.+=|...-.| .+.|.......||++.-+|-.++|..
T Consensus 2 d~~~~~~~l~~~Q~~-dGGf~~~~~~~~d~~~t~~~~~~L~l 42 (44)
T PF00432_consen 2 DVEKLIRFLLSCQNP-DGGFGGRPGGESDTCYTYCALAALSL 42 (44)
T ss_dssp HHHHHHHHHHHTBBT-TSSBBSSTTSSBBHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCC-CCCCCCCCCCCCChHHHHHHHHHHHH
Confidence 344555555555553 55677777789999999999998864
No 16
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=24.78 E-value=4.4e+02 Score=22.53 Aligned_cols=21 Identities=19% Similarity=0.580 Sum_probs=15.4
Q ss_pred ecccccCcCC------ChHHHHHHHhh
Q 023517 85 VAAYKPYFDV------DTSDVLERIKD 105 (281)
Q Consensus 85 i~yY~~yFdV------dT~~V~~Rl~~ 105 (281)
++||+.|||- +.+|+.+++-+
T Consensus 26 l~~Y~e~f~d~~~~G~sEeeii~~LG~ 52 (181)
T PF08006_consen 26 LEYYEEYFDDAGEEGKSEEEIIAELGS 52 (181)
T ss_pred HHHHHHHHHHhhhCCCCHHHHHHHcCC
Confidence 6799999983 56777777643
No 17
>KOG4783 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.99 E-value=3.2e+02 Score=22.22 Aligned_cols=22 Identities=14% Similarity=0.351 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc
Q 023517 257 IVAAIFLLQLALAVALKIYLFT 278 (281)
Q Consensus 257 i~~~i~~lh~~lal~~K~yFF~ 278 (281)
-+++++++|++|++.+-...++
T Consensus 70 aI~aVVavHvalglyiy~A~~~ 91 (102)
T KOG4783|consen 70 AICAVVAVHVALGLYIYRAIYA 91 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3456788999999887665554
No 18
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=21.44 E-value=7.3e+02 Score=23.79 Aligned_cols=69 Identities=14% Similarity=0.192 Sum_probs=32.1
Q ss_pred chhHHHHHHHHHHHHHHhhHHHHhhhccCCcceeEEecchhhHHHHH-HHHHHHHHHHHHHHHHHhcCCCch
Q 023517 125 YGPFWICSTLIFVAASIGTFVTYISHKVNNKDWNYDINLVPWSAGLF-YGYVTIVPLCLYIILKYFSAPSGL 195 (281)
Q Consensus 125 YGPfWI~~TLIf~lai~gnl~~yl~~~~~~~~~~ydf~~v~~A~~li-ygY~~lvPlil~~~lk~~~~~~sl 195 (281)
+.|+++.+.+-|+....-++..-+.... .++++.+-.......+.. .+|.+..|. ...+.+..|.+..+
T Consensus 2 ~~~~~~~~~~f~~~G~~~~~~~~l~~~~-~~~~~~s~~~~g~l~s~~~~g~~i~~~~-~g~l~~r~G~r~~~ 71 (410)
T TIGR00885 2 IIPFALITSLFALWGFANDITNPMVPQF-QQAFTLTAFQAALVQSAFYGGYFIMAIP-AAIFMKKLSYKAGI 71 (410)
T ss_pred ccHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCchHHH
Confidence 4688888877777665444432221111 012222222333333333 344444444 44555666665443
No 19
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=21.13 E-value=7.5e+02 Score=23.85 Aligned_cols=77 Identities=16% Similarity=0.227 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCCchhhhHhhhccccchhHHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023517 169 GLFYGYVTIVPLCLYIILKYFS-APSGLVQLFCLYGYSLFVFIPALCLSVVPLEIFRWVIAGVAGFMSATFVALNLRAHI 247 (281)
Q Consensus 169 ~liygY~~lvPlil~~~lk~~~-~~~sl~~liclYGYSl~i~IPvsiL~vip~~~lrWviv~~~~~~S~~fl~~nl~~~i 247 (281)
..+=.-+|.+|+++....-..+ +..+-+.-+|.-|+.+....-. +-.+|.-+ -++++...+..+.+....++..+
T Consensus 137 ~yfH~~aW~iP~~~ti~vL~~~~VdgD~ltGiC~Vg~~~~~~l~~--fvl~Pl~i--~l~iG~~fL~~G~~~l~rir~~~ 212 (328)
T PF01534_consen 137 SYFHLVAWGIPAVLTIAVLALRKVDGDELTGICFVGNQNPSALRG--FVLAPLFI--YLLIGTVFLLAGFVSLFRIRRSM 212 (328)
T ss_pred chhhhHHhhhhHHHHHHHHHhcccccccccceeEEeCCCHHHHhH--HHHHHHHH--HHHHHHHHHHHHHHHHhcchhhh
Confidence 3445667899999888866643 3445566679999887432111 12234421 23444444455555555666666
Q ss_pred hh
Q 023517 248 KS 249 (281)
Q Consensus 248 ~~ 249 (281)
++
T Consensus 213 ~~ 214 (328)
T PF01534_consen 213 KH 214 (328)
T ss_pred cc
Confidence 54
No 20
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=20.93 E-value=3.8e+02 Score=21.49 Aligned_cols=40 Identities=23% Similarity=0.385 Sum_probs=21.2
Q ss_pred hHHHHhhhhc-------hhHHH-HHHHHHHHHHHHHHHHHHHhhhhhh
Q 023517 209 FIPALCLSVV-------PLEIF-RWVIAGVAGFMSATFVALNLRAHIK 248 (281)
Q Consensus 209 ~IPvsiL~vi-------p~~~l-rWviv~~~~~~S~~fl~~nl~~~i~ 248 (281)
++|.+++.++ |.+.- +=+-+++..++|..++...+...+.
T Consensus 2 ~~P~~li~~~s~~~f~~~~~~~~~rv~l~it~lL~~~~~~~~~~~~lP 49 (237)
T PF02932_consen 2 IIPCILIVVLSWLSFWLPPESGPERVTLGITTLLAMTVFLLMVAENLP 49 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHhheEeCccccccccccchhHHHHHHHHHhhhhhhhc
Confidence 5676665443 43322 2244456666766666555555554
No 21
>PRK07668 hypothetical protein; Validated
Probab=20.90 E-value=2.8e+02 Score=25.96 Aligned_cols=28 Identities=36% Similarity=0.821 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhcCC---CchhhhHhhhc
Q 023517 176 TIVPLCLYIILKYFSAP---SGLVQLFCLYG 203 (281)
Q Consensus 176 ~lvPlil~~~lk~~~~~---~sl~~liclYG 203 (281)
.++|...-.++|+++.+ ...+|.+|+||
T Consensus 205 l~~p~~i~~~f~~~~~~~~~~~~~~~~~~y~ 235 (254)
T PRK07668 205 LIIPLSIMFLFKYFNSEDVVPMIFQIIILYG 235 (254)
T ss_pred HHHHHHHHHHHHHccccchhHHHHHHHHHHH
Confidence 34555555556665433 35667777766
No 22
>KOG1440 consensus CDP-diacylglycerol synthase [Lipid transport and metabolism]
Probab=20.24 E-value=9.2e+02 Score=24.48 Aligned_cols=15 Identities=7% Similarity=0.326 Sum_probs=9.9
Q ss_pred chhHHHHHHHHHHHH
Q 023517 125 YGPFWICSTLIFVAA 139 (281)
Q Consensus 125 YGPfWI~~TLIf~la 139 (281)
=|+.|+....+.+--
T Consensus 86 ~g~~~~~~lv~~iQi 100 (432)
T KOG1440|consen 86 MGHKYLMALVLVIQI 100 (432)
T ss_pred cCcchhhhhhhhHHH
Confidence 378888876665433
Done!