Query 023517
Match_columns 281
No_of_seqs 144 out of 269
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 08:11:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023517.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023517hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4grv_A Neurotensin receptor ty 43.7 82 0.0028 29.5 8.6 31 118-148 23-55 (510)
2 2xvc_A ESCRT-III, SSO0910; cel 19.9 23 0.00079 25.0 0.1 29 75-105 20-48 (59)
3 2kih_A Matrix protein 2; S31N, 17.1 1.6E+02 0.0055 19.1 3.6 17 260-276 15-31 (43)
4 2ljb_A M2 protein, BM2 protein 13.4 1.9E+02 0.0066 18.1 3.1 23 254-276 8-31 (35)
5 1nrp_R Receptor based peptide 10.2 63 0.0022 18.7 0.1 9 121-129 11-19 (26)
6 1wi9_A Protein C20ORF116 homol 10.0 1.2E+02 0.0041 22.1 1.6 25 81-105 20-44 (72)
7 1mli_A Muconolactone isomerase 9.7 1.7E+02 0.006 22.3 2.5 36 75-111 36-74 (96)
8 1nro_R Receptor based peptide 9.6 72 0.0025 18.6 0.2 9 121-129 11-19 (27)
9 2wsc_H Photosystem I reaction 7.2 1.3E+02 0.0045 24.5 0.9 11 116-126 64-74 (144)
10 3zy2_A Putative GDP-fucose pro 6.9 1.4E+02 0.0049 28.1 1.1 31 80-110 60-91 (362)
No 1
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}
Probab=43.71 E-value=82 Score=29.47 Aligned_cols=31 Identities=26% Similarity=0.490 Sum_probs=22.8
Q ss_pred cCCCCCcchhHHHHH--HHHHHHHHHhhHHHHh
Q 023517 118 TSDNPDLYGPFWICS--TLIFVAASIGTFVTYI 148 (281)
Q Consensus 118 ~~~~pDLYGPfWI~~--TLIf~lai~gnl~~yl 148 (281)
.+.+.|+|.-+.+++ .+||++.+.||+.-.+
T Consensus 23 ~~~~~~~~~~v~~~~~~~~i~~~g~~gN~lvi~ 55 (510)
T 4grv_A 23 LDVNTDIYSKVLVTAIYLALFVVGTVGNSVTLF 55 (510)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcChhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 455788998887765 5677888899976554
No 2
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=19.85 E-value=23 Score=24.99 Aligned_cols=29 Identities=10% Similarity=0.387 Sum_probs=23.8
Q ss_pred cCCCceeeeeecccccCcCCChHHHHHHHhh
Q 023517 75 QSSGWFRAFTVAAYKPYFDVDTSDVLERIKD 105 (281)
Q Consensus 75 ~~~g~~~~~si~yY~~yFdVdT~~V~~Rl~~ 105 (281)
+.+| |+..+++....|.|+-++|++=|++
T Consensus 20 r~sG--GildI~~~a~kygV~kdeV~~~Lrr 48 (59)
T 2xvc_A 20 VNNG--GFLDIEHFSKVYGVEKQEVVKLLEA 48 (59)
T ss_dssp HHTT--SEEEHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHcC--CEEeHHHHHHHhCCCHHHHHHHHHH
Confidence 3555 8999999999999999999865543
No 3
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=17.06 E-value=1.6e+02 Score=19.12 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHh
Q 023517 260 AIFLLQLALAVALKIYL 276 (281)
Q Consensus 260 ~i~~lh~~lal~~K~yF 276 (281)
.+..+|+.|.+.=+++|
T Consensus 15 iiGIlHLiLwildRlff 31 (43)
T 2kih_A 15 IIGILHLILWILDRLFF 31 (43)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45789999998877765
No 4
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=13.41 E-value=1.9e+02 Score=18.08 Aligned_cols=23 Identities=13% Similarity=0.031 Sum_probs=15.8
Q ss_pred hhHHHH-HHHHHHHHHHHHHHHHh
Q 023517 254 WFLIVA-AIFLLQLALAVALKIYL 276 (281)
Q Consensus 254 ~~li~~-~i~~lh~~lal~~K~yF 276 (281)
...+.+ .+.++|+.+.+.=+++|
T Consensus 8 plviaA~IigiLHlilWildrLff 31 (35)
T 2ljb_A 8 PLVVAASIIGILHFIAWTIGHLNQ 31 (35)
T ss_dssp THHHHHHHHHHHHHHHHHHHTHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhhHh
Confidence 334433 45789999998877765
No 5
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=10.17 E-value=63 Score=18.69 Aligned_cols=9 Identities=56% Similarity=1.353 Sum_probs=7.3
Q ss_pred CCCcchhHH
Q 023517 121 NPDLYGPFW 129 (281)
Q Consensus 121 ~pDLYGPfW 129 (281)
.-|-|-|||
T Consensus 11 pndkyepfw 19 (26)
T 1nrp_R 11 PNDKYEPFW 19 (26)
T ss_pred CCcccCccc
Confidence 348899999
No 6
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=9.97 E-value=1.2e+02 Score=22.14 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=20.4
Q ss_pred eeeeecccccCcCCChHHHHHHHhh
Q 023517 81 RAFTVAAYKPYFDVDTSDVLERIKD 105 (281)
Q Consensus 81 ~~~si~yY~~yFdVdT~~V~~Rl~~ 105 (281)
.+..++=...=|++.|+++.+||..
T Consensus 20 Kvv~LedLA~~F~l~t~~~i~RI~~ 44 (72)
T 1wi9_A 20 KVVLLEDLAFQMGLRTQDAINRIQD 44 (72)
T ss_dssp SEECHHHHHHHHCSCHHHHHHHHHH
T ss_pred CeeeHHHHHHHhCCChHHHHHHHHH
Confidence 3456666777899999999999987
No 7
>1mli_A Muconolactone isomerase; intramolecular oxidoreductase; 3.30A {Pseudomonas putida} SCOP: d.58.4.1
Probab=9.73 E-value=1.7e+02 Score=22.33 Aligned_cols=36 Identities=25% Similarity=0.503 Sum_probs=27.8
Q ss_pred cCCCceeeeeecc-cc--cCcCCChHHHHHHHhhcccCCC
Q 023517 75 QSSGWFRAFTVAA-YK--PYFDVDTSDVLERIKDSLFPFR 111 (281)
Q Consensus 75 ~~~g~~~~~si~y-Y~--~yFdVdT~~V~~Rl~~sl~P~k 111 (281)
+++-|.++|.+.- |+ .-|||++.+=+++++.+| |..
T Consensus 36 ~~G~~~~lWRv~G~y~nisIfdv~s~~eLh~iL~~L-PLf 74 (96)
T 1mli_A 36 REGTWRHLWRIAGHYANYSVFDVPSVEALHDTLMQL-PLF 74 (96)
T ss_pred hCCeeEEEEEecCCccEEEEEEcCCHHHHHHHHHhC-CCC
Confidence 3666888888743 33 379999999999999997 543
No 8
>1nro_R Receptor based peptide NRP; serine proteinase/receptor; 3.10A {Homo sapiens}
Probab=9.59 E-value=72 Score=18.59 Aligned_cols=9 Identities=56% Similarity=1.353 Sum_probs=7.3
Q ss_pred CCCcchhHH
Q 023517 121 NPDLYGPFW 129 (281)
Q Consensus 121 ~pDLYGPfW 129 (281)
.-|-|-|||
T Consensus 11 pndkyepfw 19 (27)
T 1nro_R 11 PNDKYEPFW 19 (27)
T ss_pred CCcccCccc
Confidence 348899999
No 9
>2wsc_H Photosystem I reaction center subunit VI, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Spinacia oleracea} PDB: 2wse_H* 2wsf_H* 2o01_H* 3lw5_H*
Probab=7.19 E-value=1.3e+02 Score=24.51 Aligned_cols=11 Identities=36% Similarity=0.652 Sum_probs=8.6
Q ss_pred cccCCCCCcch
Q 023517 116 EKTSDNPDLYG 126 (281)
Q Consensus 116 e~~~~~pDLYG 126 (281)
|+.-.+|||||
T Consensus 64 ~nTTG~WDlYG 74 (144)
T 2wsc_H 64 ANTTGQWDVYG 74 (144)
T ss_dssp CCSSCTTSSCC
T ss_pred ccccccceecc
Confidence 34577999999
No 10
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=6.93 E-value=1.4e+02 Score=28.07 Aligned_cols=31 Identities=19% Similarity=0.296 Sum_probs=24.9
Q ss_pred eeeeeecccccCcCC-ChHHHHHHHhhcccCC
Q 023517 80 FRAFTVAAYKPYFDV-DTSDVLERIKDSLFPF 110 (281)
Q Consensus 80 ~~~~si~yY~~yFdV-dT~~V~~Rl~~sl~P~ 110 (281)
..+|.++-.|+|-+| +-+|+.++|.-.++|-
T Consensus 60 ~~yF~v~~l~~yhrvi~me~Fm~~lap~~WP~ 91 (362)
T 3zy2_A 60 EFLFQVGTVAKYTRVVTMQEFTKKIMPTVWPP 91 (362)
T ss_dssp HHHBCHHHHTTTSCEECHHHHHHHTHHHHSCG
T ss_pred hheeecchhhhhceeeeHHHHHHHhccccCCc
Confidence 356888888888884 5678899999999984
Done!