Query 023517
Match_columns 281
No_of_seqs 144 out of 269
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 08:11:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023517.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023517hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mlia_ d.58.4.1 (A:) Muconala 13.5 56 0.0041 23.3 2.7 38 74-112 35-75 (96)
2 d1wi9a_ a.4.5.47 (A:) Hypothet 9.1 63 0.0046 21.9 1.6 24 82-105 21-44 (72)
3 d1s7ea2 a.35.1.7 (A:6-85) Hepa 8.0 64 0.0047 22.2 1.3 16 93-108 1-16 (80)
4 d1knva_ c.52.1.7 (A:) Restrict 7.7 78 0.0057 26.6 1.9 36 88-124 109-144 (290)
5 d1ldja1 a.4.5.34 (A:687-776) A 7.6 99 0.0072 21.3 2.2 36 87-125 51-86 (90)
6 d1wdka2 a.100.1.3 (A:621-715) 7.5 69 0.005 22.1 1.3 16 93-108 1-16 (95)
7 d1iuya_ a.4.5.34 (A:) Cullin-3 6.8 1.2E+02 0.0085 20.8 2.3 37 86-125 52-88 (92)
8 d1x2la1 a.35.1.7 (A:9-95) Home 6.5 92 0.0067 21.7 1.5 16 93-108 8-23 (87)
9 d2c5sa2 d.308.1.1 (A:3-173) Th 5.8 1.5E+02 0.011 22.3 2.7 34 90-124 113-146 (171)
10 d1wh8a_ a.35.1.7 (A:) Homeobox 5.0 1.3E+02 0.0092 21.9 1.5 15 93-107 26-40 (111)
No 1
>d1mlia_ d.58.4.1 (A:) Muconalactone isomerase, MLI {Pseudomonas putida [TaxId: 303]}
Probab=13.48 E-value=56 Score=23.25 Aligned_cols=38 Identities=24% Similarity=0.468 Sum_probs=28.9
Q ss_pred ccCCCceeeeeecc-cc--cCcCCChHHHHHHHhhcccCCCC
Q 023517 74 AQSSGWFRAFTVAA-YK--PYFDVDTSDVLERIKDSLFPFRD 112 (281)
Q Consensus 74 ~~~~g~~~~~si~y-Y~--~yFdVdT~~V~~Rl~~sl~P~k~ 112 (281)
++++.|.++|.+.- |+ .-|||++.+-+++++.+| |..+
T Consensus 35 q~~G~~~~LWRv~G~~~nisIfdv~s~deLh~iL~~L-PL~p 75 (96)
T d1mlia_ 35 QREGTWRHLWRIAGHYANYSVFDVPSVEALHDTLMQL-PLFP 75 (96)
T ss_pred HhCCCcEEEEEecCCceEEEEEEcCCHHHHHHHHHcC-CCcc
Confidence 34777999998832 33 459999999999999996 6433
No 2
>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.12 E-value=63 Score=21.89 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=20.3
Q ss_pred eeeecccccCcCCChHHHHHHHhh
Q 023517 82 AFTVAAYKPYFDVDTSDVLERIKD 105 (281)
Q Consensus 82 ~~si~yY~~yFdVdT~~V~~Rl~~ 105 (281)
+-.++=...-|++.|+++.+||..
T Consensus 21 vv~LedLAa~F~lktqd~i~RIq~ 44 (72)
T d1wi9a_ 21 VVLLEDLAFQMGLRTQDAINRIQD 44 (72)
T ss_dssp EECHHHHHHHHCSCHHHHHHHHHH
T ss_pred EeeHHHHHHHcCCcHHHHHHHHHH
Confidence 456677778899999999999976
No 3
>d1s7ea2 a.35.1.7 (A:6-85) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.05 E-value=64 Score=22.17 Aligned_cols=16 Identities=31% Similarity=0.561 Sum_probs=14.4
Q ss_pred CCChHHHHHHHhhccc
Q 023517 93 DVDTSDVLERIKDSLF 108 (281)
Q Consensus 93 dVdT~~V~~Rl~~sl~ 108 (281)
++||.++.+|+...|-
T Consensus 1 eldT~~I~~~i~~eL~ 16 (80)
T d1s7ea2 1 EINTKEVAQRITTELK 16 (80)
T ss_dssp CCCSHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5899999999999884
No 4
>d1knva_ c.52.1.7 (A:) Restriction endonuclease Bse634I {Bacillus stearothermophilus [TaxId: 1422]}
Probab=7.73 E-value=78 Score=26.56 Aligned_cols=36 Identities=28% Similarity=0.594 Sum_probs=30.3
Q ss_pred cccCcCCChHHHHHHHhhcccCCCCCcccccCCCCCc
Q 023517 88 YKPYFDVDTSDVLERIKDSLFPFRDTFTEKTSDNPDL 124 (281)
Q Consensus 88 Y~~yFdVdT~~V~~Rl~~sl~P~k~~f~e~~~~~pDL 124 (281)
+.+-|+=.+.|++..+..++.|++..+ +.+..|||+
T Consensus 109 ~~~L~~~e~~e~i~~~~a~l~~~k~~v-~LiTSnPD~ 144 (290)
T d1knva_ 109 FRKIFDNETREKLHQLEKSLLTHKQQV-RLITSNPDL 144 (290)
T ss_dssp GGGGBCHHHHHHHHHHHHHHHSSSSCC-BCCCCCCSE
T ss_pred HHHHhhHHHHHHHHHHHHhhhhhcccc-ccccCCCce
Confidence 567788899999999999999987764 457889998
No 5
>d1ldja1 a.4.5.34 (A:687-776) Anaphase promoting complex (APC) {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.58 E-value=99 Score=21.26 Aligned_cols=36 Identities=17% Similarity=0.280 Sum_probs=25.4
Q ss_pred ccccCcCCChHHHHHHHhhcccCCCCCcccccCCCCCcc
Q 023517 87 AYKPYFDVDTSDVLERIKDSLFPFRDTFTEKTSDNPDLY 125 (281)
Q Consensus 87 yY~~yFdVdT~~V~~Rl~~sl~P~k~~f~e~~~~~pDLY 125 (281)
-.++-|.++..++++||-. |+ ..+|.+....+++.|
T Consensus 51 ~l~~~F~p~~~~iK~~Ie~-LI--ereYi~R~~~~~~~y 86 (90)
T d1ldja1 51 QLSSRFKPRVPVIKKCIDI-LI--EKEYLERVDGEKDTY 86 (90)
T ss_dssp HHTTTCCCCHHHHHHHHHH-HH--HTTSEEECSSSTTEE
T ss_pred HHhccCCCCHHHHHHHHHH-HH--hhHHHhcCCCCCcee
Confidence 3566799999998888765 43 234666666778876
No 6
>d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]}
Probab=7.52 E-value=69 Score=22.09 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=13.3
Q ss_pred CCChHHHHHHHhhccc
Q 023517 93 DVDTSDVLERIKDSLF 108 (281)
Q Consensus 93 dVdT~~V~~Rl~~sl~ 108 (281)
|++.+||.+||...++
T Consensus 1 ~~~d~~IvnRll~~~~ 16 (95)
T d1wdka2 1 DVTDEDIINWMMIPLC 16 (95)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6788999999998764
No 7
>d1iuya_ a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.83 E-value=1.2e+02 Score=20.81 Aligned_cols=37 Identities=19% Similarity=0.361 Sum_probs=26.3
Q ss_pred cccccCcCCChHHHHHHHhhcccCCCCCcccccCCCCCcc
Q 023517 86 AAYKPYFDVDTSDVLERIKDSLFPFRDTFTEKTSDNPDLY 125 (281)
Q Consensus 86 ~yY~~yFdVdT~~V~~Rl~~sl~P~k~~f~e~~~~~pDLY 125 (281)
+-.++-|.++..+++++|-. |+ ..+|.+....+++.|
T Consensus 52 ~~l~~~F~p~~~~iK~~Ie~-LI--ekeYi~R~~~d~~~y 88 (92)
T d1iuya_ 52 QQLKARFLPSPVVIKKRIEG-LI--EREYLARTPEDRKVY 88 (92)
T ss_dssp HHTCSSCCCCHHHHHHHHHH-HH--HTTSEEECSSCSSEE
T ss_pred HHHhCcCCCCHHHHHHHHHH-HH--hhhhhhcCCCCCCee
Confidence 44678899999998888865 43 235666666778776
No 8
>d1x2la1 a.35.1.7 (A:9-95) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.52 E-value=92 Score=21.65 Aligned_cols=16 Identities=25% Similarity=0.592 Sum_probs=14.3
Q ss_pred CCChHHHHHHHhhccc
Q 023517 93 DVDTSDVLERIKDSLF 108 (281)
Q Consensus 93 dVdT~~V~~Rl~~sl~ 108 (281)
++||.+|.+||+..|-
T Consensus 8 ~ldT~~i~~~v~~~L~ 23 (87)
T d1x2la1 8 QLDTAEIAFQVKEQLL 23 (87)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5899999999999874
No 9
>d2c5sa2 d.308.1.1 (A:3-173) Thiamine biosynthesis protein ThiI, N-terminal domain {Bacillus anthracis [TaxId: 1392]}
Probab=5.84 E-value=1.5e+02 Score=22.26 Aligned_cols=34 Identities=21% Similarity=0.351 Sum_probs=22.2
Q ss_pred cCcCCChHHHHHHHhhcccCCCCCcccccCCCCCc
Q 023517 90 PYFDVDTSDVLERIKDSLFPFRDTFTEKTSDNPDL 124 (281)
Q Consensus 90 ~yFdVdT~~V~~Rl~~sl~P~k~~f~e~~~~~pDL 124 (281)
+-|+.++.|+-+.+-.+++...++ ......|||+
T Consensus 113 k~f~~tS~ei~~~lG~~il~~~~~-~kVdL~nPd~ 146 (171)
T d2c5sa2 113 KHFPMRTMELLPEIGGHILENTED-ITVDVHNPDV 146 (171)
T ss_dssp TTCSSCHHHHHHHHHHHHHTTSSS-CEECSSSCSE
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCC-CeeeccCCCE
Confidence 468888888888888877653322 2334567875
No 10
>d1wh8a_ a.35.1.7 (A:) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.99 E-value=1.3e+02 Score=21.86 Aligned_cols=15 Identities=33% Similarity=0.667 Sum_probs=0.0
Q ss_pred CCChHHHHHHHhhcc
Q 023517 93 DVDTSDVLERIKDSL 107 (281)
Q Consensus 93 dVdT~~V~~Rl~~sl 107 (281)
++||.++.+||+.-|
T Consensus 26 eLDT~~Ia~~v~~~L 40 (111)
T d1wh8a_ 26 ELDTYSITKRVKEVL 40 (111)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH
Done!