Query 023518
Match_columns 281
No_of_seqs 279 out of 1758
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 04:38:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023518.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023518hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03088 SGT1, suppressor of 100.0 2.1E-45 4.6E-50 333.3 30.5 248 1-265 1-248 (356)
2 cd06488 p23_melusin_like p23_l 99.9 1.6E-25 3.6E-30 162.5 10.3 87 174-260 1-87 (87)
3 KOG1309 Suppressor of G2 allel 99.9 2.7E-25 5.9E-30 174.9 8.9 92 172-263 2-93 (196)
4 cd06489 p23_CS_hSgt1_like p23_ 99.9 1.7E-23 3.7E-28 151.1 9.9 84 177-260 1-84 (84)
5 KOG0553 TPR repeat-containing 99.9 4.1E-21 8.8E-26 164.4 13.4 119 2-120 81-199 (304)
6 cd06490 p23_NCB5OR p23_like do 99.9 2E-21 4.3E-26 140.8 9.9 83 176-260 1-87 (87)
7 cd06466 p23_CS_SGT1_like p23_l 99.9 4.5E-21 9.8E-26 138.4 10.1 84 177-260 1-84 (84)
8 cd06468 p23_CacyBP p23_like do 99.8 6.7E-21 1.5E-25 139.9 10.4 86 175-260 3-92 (92)
9 cd06465 p23_hB-ind1_like p23_l 99.8 1.5E-20 3.3E-25 142.1 10.5 92 175-268 2-95 (108)
10 COG5091 SGT1 Suppressor of G2 99.8 2.6E-20 5.6E-25 156.2 11.2 248 9-267 2-271 (368)
11 cd00237 p23 p23 binds heat sho 99.8 1.3E-19 2.9E-24 135.5 10.7 90 175-266 3-93 (106)
12 cd06493 p23_NUDCD1_like p23_NU 99.8 1.9E-18 4.1E-23 124.9 9.4 81 176-259 1-84 (85)
13 PF04969 CS: CS domain; Inter 99.8 2E-18 4.2E-23 122.8 9.3 77 174-250 1-79 (79)
14 cd06469 p23_DYX1C1_like p23_li 99.8 4.2E-18 9.1E-23 121.1 9.1 78 178-260 1-78 (78)
15 cd06467 p23_NUDC_like p23_like 99.7 8.2E-18 1.8E-22 121.6 9.5 81 176-259 1-84 (85)
16 cd06463 p23_like Proteins cont 99.7 1.1E-17 2.5E-22 120.0 10.2 83 178-260 1-84 (84)
17 KOG0548 Molecular co-chaperone 99.7 4.9E-17 1.1E-21 148.3 14.4 116 2-117 358-473 (539)
18 cd06494 p23_NUDCD2_like p23-li 99.7 2.1E-17 4.6E-22 120.6 8.9 81 175-259 7-92 (93)
19 PRK15359 type III secretion sy 99.7 8.5E-16 1.8E-20 122.2 15.8 116 4-119 26-141 (144)
20 KOG1667 Zn2+-binding protein M 99.7 9.1E-17 2E-21 133.1 8.9 92 172-263 213-305 (320)
21 KOG3260 Calcyclin-binding prot 99.6 1.3E-15 2.9E-20 120.1 9.0 104 176-279 77-187 (224)
22 KOG0543 FKBP-type peptidyl-pro 99.6 7.1E-15 1.5E-19 130.9 14.4 119 2-120 208-341 (397)
23 KOG0548 Molecular co-chaperone 99.6 2.3E-15 4.9E-20 137.5 11.5 114 1-114 1-114 (539)
24 PRK15363 pathogenicity island 99.6 1.9E-14 4.2E-19 113.9 15.0 118 3-120 36-153 (157)
25 cd06492 p23_mNUDC_like p23-lik 99.6 5E-15 1.1E-19 107.1 9.6 81 176-259 1-86 (87)
26 cd06495 p23_NUDCD3_like p23-li 99.6 8E-15 1.7E-19 108.6 9.7 87 175-261 6-95 (102)
27 TIGR02552 LcrH_SycD type III s 99.6 6.6E-14 1.4E-18 109.4 15.2 116 3-118 18-133 (135)
28 KOG4234 TPR repeat-containing 99.5 1.2E-13 2.5E-18 112.4 13.1 119 2-120 95-218 (271)
29 KOG4648 Uncharacterized conser 99.5 3.8E-14 8.3E-19 123.5 10.1 118 3-120 98-215 (536)
30 PRK11189 lipoprotein NlpI; Pro 99.5 6.2E-13 1.4E-17 118.1 15.7 109 2-110 64-172 (296)
31 KOG0376 Serine-threonine phosp 99.5 9.9E-14 2.2E-18 125.9 8.9 123 1-123 3-125 (476)
32 PRK10370 formate-dependent nit 99.5 2.1E-12 4.6E-17 108.0 15.2 112 2-113 73-187 (198)
33 KOG0550 Molecular chaperone (D 99.4 8E-13 1.7E-17 117.7 11.7 116 4-120 251-370 (486)
34 KOG0547 Translocase of outer m 99.4 2.4E-12 5.2E-17 116.7 12.8 117 2-118 115-232 (606)
35 TIGR02795 tol_pal_ybgF tol-pal 99.4 7E-12 1.5E-16 95.1 13.6 107 2-108 2-114 (119)
36 TIGR00990 3a0801s09 mitochondr 99.4 1.2E-11 2.5E-16 120.6 15.6 112 5-116 368-479 (615)
37 TIGR00990 3a0801s09 mitochondr 99.4 1.1E-11 2.3E-16 120.8 15.3 118 3-120 332-449 (615)
38 KOG3158 HSP90 co-chaperone p23 99.4 1.4E-12 3E-17 102.9 7.0 91 175-267 9-101 (180)
39 cd00189 TPR Tetratricopeptide 99.4 2.5E-11 5.4E-16 86.3 12.8 99 4-102 2-100 (100)
40 PRK15331 chaperone protein Sic 99.4 2.1E-11 4.5E-16 97.1 13.2 116 3-119 38-153 (165)
41 KOG2265 Nuclear distribution p 99.3 2.4E-12 5.2E-17 101.8 6.5 85 174-261 19-107 (179)
42 KOG4642 Chaperone-dependent E3 99.3 6.6E-12 1.4E-16 104.7 8.8 99 1-99 9-107 (284)
43 KOG4626 O-linked N-acetylgluco 99.3 5E-12 1.1E-16 117.6 9.0 114 3-116 253-366 (966)
44 PF13414 TPR_11: TPR repeat; P 99.3 1.3E-11 2.8E-16 85.1 8.4 67 35-101 2-69 (69)
45 PF13414 TPR_11: TPR repeat; P 99.3 1.1E-11 2.4E-16 85.5 7.7 66 2-67 3-69 (69)
46 KOG1126 DNA-binding cell divis 99.3 6.1E-12 1.3E-16 117.7 8.0 119 2-120 421-539 (638)
47 KOG4626 O-linked N-acetylgluco 99.3 5.1E-11 1.1E-15 111.0 12.6 116 4-119 322-437 (966)
48 COG3063 PilF Tfp pilus assembl 99.3 8.7E-11 1.9E-15 97.7 12.6 119 2-120 35-155 (250)
49 PRK02603 photosystem I assembl 99.3 1.4E-10 3E-15 94.9 13.8 110 2-111 35-162 (172)
50 KOG0551 Hsp90 co-chaperone CNS 99.3 4.5E-11 9.7E-16 104.0 11.2 100 2-101 81-184 (390)
51 KOG1155 Anaphase-promoting com 99.3 6E-11 1.3E-15 107.2 12.4 112 9-120 337-448 (559)
52 PRK15179 Vi polysaccharide bio 99.3 9.5E-11 2.1E-15 114.4 14.8 119 2-120 86-204 (694)
53 PRK12370 invasion protein regu 99.3 1E-10 2.2E-15 112.6 14.8 112 5-116 341-453 (553)
54 PF12895 Apc3: Anaphase-promot 99.2 2E-11 4.4E-16 87.7 7.0 81 15-96 2-84 (84)
55 TIGR02521 type_IV_pilW type IV 99.2 2.7E-10 5.8E-15 95.4 14.9 117 2-118 31-149 (234)
56 cd00298 ACD_sHsps_p23-like Thi 99.2 2.7E-11 5.9E-16 85.1 7.2 73 178-250 1-80 (80)
57 PRK15359 type III secretion sy 99.2 8.1E-11 1.7E-15 93.5 10.7 96 22-120 13-108 (144)
58 KOG0547 Translocase of outer m 99.2 7.2E-11 1.6E-15 107.3 11.6 118 1-118 325-442 (606)
59 PRK09782 bacteriophage N4 rece 99.2 1.8E-10 3.9E-15 116.5 15.6 110 3-112 610-719 (987)
60 KOG1155 Anaphase-promoting com 99.2 2.2E-10 4.9E-15 103.5 14.5 117 4-120 366-482 (559)
61 PRK10370 formate-dependent nit 99.2 1.6E-10 3.4E-15 96.7 12.7 106 15-120 52-160 (198)
62 KOG1125 TPR repeat-containing 99.2 3.8E-11 8.3E-16 110.9 9.6 115 4-118 432-556 (579)
63 TIGR03302 OM_YfiO outer membra 99.2 3.9E-10 8.5E-15 96.4 15.3 108 2-109 33-154 (235)
64 PRK12370 invasion protein regu 99.2 2.1E-10 4.5E-15 110.5 15.0 95 16-110 318-412 (553)
65 KOG1126 DNA-binding cell divis 99.2 9.5E-11 2.1E-15 109.8 11.4 118 3-120 490-607 (638)
66 KOG0624 dsRNA-activated protei 99.2 1E-10 2.2E-15 102.4 10.8 103 3-105 39-141 (504)
67 TIGR02521 type_IV_pilW type IV 99.2 7.3E-10 1.6E-14 92.7 15.0 118 3-120 66-185 (234)
68 TIGR02552 LcrH_SycD type III s 99.2 3.4E-10 7.4E-15 88.3 11.5 98 23-120 4-101 (135)
69 PRK10803 tol-pal system protei 99.2 9.2E-10 2E-14 95.8 15.2 109 3-111 143-258 (263)
70 COG5010 TadD Flp pilus assembl 99.2 8.5E-10 1.9E-14 93.4 13.3 115 6-120 104-218 (257)
71 KOG0545 Aryl-hydrocarbon recep 99.1 1.1E-09 2.4E-14 91.9 13.5 117 4-120 180-315 (329)
72 PRK09782 bacteriophage N4 rece 99.1 7.8E-10 1.7E-14 112.0 15.2 111 9-120 583-693 (987)
73 PF13432 TPR_16: Tetratricopep 99.1 2.2E-10 4.7E-15 78.0 7.5 62 8-69 3-64 (65)
74 PF13432 TPR_16: Tetratricopep 99.1 2.6E-10 5.7E-15 77.6 7.8 65 40-104 1-65 (65)
75 PF13429 TPR_15: Tetratricopep 99.1 3E-10 6.6E-15 99.9 10.1 117 4-120 148-264 (280)
76 CHL00033 ycf3 photosystem I as 99.1 1.5E-09 3.3E-14 88.2 13.5 110 2-111 35-162 (168)
77 PF13512 TPR_18: Tetratricopep 99.1 2.6E-09 5.7E-14 83.4 13.3 106 2-107 10-136 (142)
78 COG4783 Putative Zn-dependent 99.1 1.9E-09 4.1E-14 98.3 14.3 117 4-120 308-424 (484)
79 PRK15174 Vi polysaccharide exp 99.1 1.4E-09 3E-14 106.7 14.5 115 5-119 249-367 (656)
80 KOG2076 RNA polymerase III tra 99.1 2.3E-09 5E-14 103.6 15.3 118 3-120 140-257 (895)
81 PRK15174 Vi polysaccharide exp 99.1 1.6E-09 3.4E-14 106.3 14.7 100 4-103 286-385 (656)
82 COG4235 Cytochrome c biogenesi 99.1 4.9E-09 1.1E-13 90.8 15.9 114 2-115 156-272 (287)
83 COG3063 PilF Tfp pilus assembl 99.1 1.8E-09 3.9E-14 90.0 12.2 117 3-119 70-188 (250)
84 KOG4555 TPR repeat-containing 99.1 2.7E-09 5.9E-14 81.4 12.0 99 4-102 45-147 (175)
85 PLN02789 farnesyltranstransfer 99.1 4.3E-09 9.4E-14 94.2 14.7 114 3-116 72-188 (320)
86 TIGR03302 OM_YfiO outer membra 99.0 4E-09 8.7E-14 90.2 13.1 118 3-120 71-219 (235)
87 PRK15179 Vi polysaccharide bio 99.0 5.9E-09 1.3E-13 102.0 15.7 116 3-118 121-237 (694)
88 PF13525 YfiO: Outer membrane 99.0 1.8E-08 4E-13 84.6 16.0 119 2-120 5-143 (203)
89 PRK11189 lipoprotein NlpI; Pro 99.0 3.9E-09 8.5E-14 93.8 12.4 106 15-120 39-148 (296)
90 PRK10049 pgaA outer membrane p 99.0 6.4E-09 1.4E-13 103.8 15.0 112 3-115 50-161 (765)
91 TIGR02917 PEP_TPR_lipo putativ 99.0 6.6E-09 1.4E-13 103.6 15.1 116 3-118 126-241 (899)
92 COG1729 Uncharacterized protei 99.0 1.3E-08 2.9E-13 87.1 14.2 110 3-112 142-257 (262)
93 PRK11447 cellulose synthase su 99.0 1.3E-08 2.7E-13 106.0 15.2 110 4-113 305-428 (1157)
94 PRK10866 outer membrane biogen 99.0 3.9E-08 8.4E-13 84.9 15.7 119 2-120 32-177 (243)
95 PF14559 TPR_19: Tetratricopep 99.0 3.3E-09 7.2E-14 72.6 7.4 67 12-78 1-67 (68)
96 TIGR02917 PEP_TPR_lipo putativ 98.9 1.4E-08 3.1E-13 101.2 14.8 114 5-119 773-886 (899)
97 PRK15363 pathogenicity island 98.9 1E-08 2.3E-13 81.4 10.9 93 28-120 26-119 (157)
98 PF13371 TPR_9: Tetratricopept 98.9 5.1E-09 1.1E-13 72.8 7.7 62 45-106 4-65 (73)
99 PLN02789 farnesyltranstransfer 98.9 2.6E-08 5.6E-13 89.3 13.9 109 12-120 47-158 (320)
100 PRK10049 pgaA outer membrane p 98.9 2.8E-08 6E-13 99.3 15.4 109 4-112 361-469 (765)
101 PF13371 TPR_9: Tetratricopept 98.9 1E-08 2.2E-13 71.3 8.8 70 9-78 2-71 (73)
102 PRK11788 tetratricopeptide rep 98.9 2.6E-08 5.6E-13 91.3 14.0 115 5-119 110-229 (389)
103 PRK11788 tetratricopeptide rep 98.9 3.3E-08 7.1E-13 90.6 14.6 98 7-104 185-283 (389)
104 PRK11447 cellulose synthase su 98.9 2.2E-08 4.8E-13 104.2 14.6 101 4-104 605-705 (1157)
105 PF09976 TPR_21: Tetratricopep 98.9 3.4E-08 7.3E-13 78.4 11.6 92 4-95 13-110 (145)
106 KOG1308 Hsp70-interacting prot 98.9 1.1E-09 2.5E-14 95.8 3.2 111 2-113 114-224 (377)
107 PF14559 TPR_19: Tetratricopep 98.9 9.5E-09 2E-13 70.4 6.8 67 46-112 1-67 (68)
108 PF12688 TPR_5: Tetratrico pep 98.8 1.2E-07 2.7E-12 72.6 13.0 97 2-98 1-103 (120)
109 COG5010 TadD Flp pilus assembl 98.8 5.2E-08 1.1E-12 82.7 11.8 115 6-120 70-184 (257)
110 KOG4162 Predicted calmodulin-b 98.8 3.6E-08 7.8E-13 94.1 11.9 104 2-105 684-789 (799)
111 KOG1173 Anaphase-promoting com 98.8 3.1E-08 6.8E-13 91.7 11.1 110 6-115 418-534 (611)
112 PF13429 TPR_15: Tetratricopep 98.8 2.8E-08 6E-13 87.4 10.5 115 6-120 114-230 (280)
113 PF06552 TOM20_plant: Plant sp 98.8 7.6E-08 1.7E-12 77.7 11.8 98 18-115 7-125 (186)
114 PLN03088 SGT1, suppressor of 98.8 5.2E-08 1.1E-12 88.8 11.7 83 2-84 36-118 (356)
115 KOG2003 TPR repeat-containing 98.8 2.2E-08 4.8E-13 90.7 8.3 119 2-120 490-608 (840)
116 KOG3060 Uncharacterized conser 98.8 3.1E-07 6.7E-12 77.7 14.6 115 6-120 90-241 (289)
117 PLN03098 LPA1 LOW PSII ACCUMUL 98.8 3.1E-08 6.7E-13 90.7 9.3 63 3-65 76-141 (453)
118 CHL00033 ycf3 photosystem I as 98.8 7.2E-08 1.6E-12 78.3 10.5 111 8-118 5-120 (168)
119 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 1.4E-07 3E-12 86.4 12.6 69 31-99 70-141 (453)
120 PRK10153 DNA-binding transcrip 98.7 2.6E-07 5.6E-12 88.0 14.7 101 4-105 341-488 (517)
121 COG4783 Putative Zn-dependent 98.7 2.3E-07 5.1E-12 84.9 13.4 110 7-116 345-454 (484)
122 KOG1156 N-terminal acetyltrans 98.7 1.4E-07 3.1E-12 88.6 12.0 117 4-120 9-125 (700)
123 KOG0624 dsRNA-activated protei 98.7 5.1E-07 1.1E-11 79.5 14.5 110 4-113 157-266 (504)
124 PRK14574 hmsH outer membrane p 98.7 2.9E-07 6.3E-12 91.9 14.0 114 2-115 34-147 (822)
125 KOG0543 FKBP-type peptidyl-pro 98.7 2.7E-07 5.9E-12 82.9 12.3 96 4-99 259-355 (397)
126 cd00189 TPR Tetratricopeptide 98.7 4.3E-07 9.3E-12 63.9 11.1 83 38-120 2-84 (100)
127 KOG0550 Molecular chaperone (D 98.7 9.8E-08 2.1E-12 85.6 8.8 119 2-120 203-337 (486)
128 KOG1128 Uncharacterized conser 98.7 9.2E-08 2E-12 91.0 8.8 105 2-106 485-589 (777)
129 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 4.6E-07 9.9E-12 83.1 13.0 92 8-99 206-297 (395)
130 KOG2002 TPR-containing nuclear 98.6 3.9E-07 8.5E-12 89.1 12.6 113 2-114 307-424 (1018)
131 KOG2076 RNA polymerase III tra 98.6 3.7E-07 8.1E-12 88.6 12.1 100 3-102 415-515 (895)
132 cd05804 StaR_like StaR_like; a 98.6 5.3E-07 1.1E-11 81.6 12.3 97 5-101 117-217 (355)
133 TIGR00540 hemY_coli hemY prote 98.6 1.7E-06 3.7E-11 80.4 15.8 117 4-120 86-203 (409)
134 PF09976 TPR_21: Tetratricopep 98.6 1.9E-06 4.1E-11 68.3 13.9 93 4-97 50-145 (145)
135 COG4785 NlpI Lipoprotein NlpI, 98.6 2.3E-07 5.1E-12 76.9 8.6 114 2-115 65-178 (297)
136 KOG0553 TPR repeat-containing 98.6 3.2E-07 6.9E-12 79.4 9.4 84 4-87 117-200 (304)
137 PRK14574 hmsH outer membrane p 98.6 9.5E-07 2E-11 88.2 14.1 112 5-117 105-216 (822)
138 KOG1125 TPR repeat-containing 98.6 4.7E-07 1E-11 84.3 11.0 97 5-101 288-384 (579)
139 KOG1129 TPR repeat-containing 98.6 1.4E-07 3E-12 82.5 7.0 107 14-120 336-445 (478)
140 PRK02603 photosystem I assembl 98.6 4.5E-07 9.7E-12 74.0 9.5 87 33-119 32-121 (172)
141 PF13424 TPR_12: Tetratricopep 98.5 1.2E-07 2.5E-12 66.8 4.8 65 35-99 4-75 (78)
142 KOG3060 Uncharacterized conser 98.5 3.6E-06 7.8E-11 71.4 14.3 85 3-87 155-242 (289)
143 PRK11906 transcriptional regul 98.5 2E-06 4.3E-11 79.1 13.6 113 4-116 257-384 (458)
144 KOG2002 TPR-containing nuclear 98.5 1.1E-06 2.4E-11 86.0 12.3 116 3-118 271-390 (1018)
145 KOG1129 TPR repeat-containing 98.5 4.9E-07 1.1E-11 79.2 8.7 118 2-119 256-373 (478)
146 TIGR02795 tol_pal_ybgF tol-pal 98.5 1.4E-06 3E-11 65.7 10.3 84 36-119 2-91 (119)
147 PRK11906 transcriptional regul 98.5 2.2E-06 4.7E-11 78.8 12.9 91 15-105 317-407 (458)
148 TIGR00540 hemY_coli hemY prote 98.5 2E-06 4.2E-11 80.0 12.7 116 4-120 265-386 (409)
149 COG4235 Cytochrome c biogenesi 98.5 3E-06 6.6E-11 73.6 12.6 105 16-120 136-243 (287)
150 PRK10747 putative protoheme IX 98.5 6.8E-06 1.5E-10 76.1 15.8 115 5-119 87-202 (398)
151 COG2956 Predicted N-acetylgluc 98.4 3.9E-06 8.3E-11 73.5 12.5 116 5-120 144-265 (389)
152 PRK14720 transcript cleavage f 98.4 3.1E-06 6.8E-11 84.3 12.9 113 3-117 32-163 (906)
153 cd05804 StaR_like StaR_like; a 98.4 3.9E-06 8.4E-11 75.9 12.4 117 4-120 45-202 (355)
154 COG4105 ComL DNA uptake lipopr 98.4 1.5E-05 3.3E-10 68.0 14.9 119 2-120 34-169 (254)
155 KOG1310 WD40 repeat protein [G 98.4 1.4E-06 3.1E-11 80.5 8.9 107 2-108 374-483 (758)
156 PF13424 TPR_12: Tetratricopep 98.4 8E-07 1.7E-11 62.5 5.7 65 2-66 5-76 (78)
157 PRK10747 putative protoheme IX 98.3 8E-06 1.7E-10 75.6 13.1 113 4-120 265-377 (398)
158 KOG1174 Anaphase-promoting com 98.3 3.7E-06 8.1E-11 75.8 10.2 109 2-110 300-408 (564)
159 PF12895 Apc3: Anaphase-promot 98.3 1E-06 2.2E-11 63.0 5.4 58 4-62 27-84 (84)
160 PF13525 YfiO: Outer membrane 98.3 3.3E-05 7.2E-10 64.8 14.8 116 3-118 43-192 (203)
161 PRK15331 chaperone protein Sic 98.3 6E-06 1.3E-10 66.1 9.4 89 32-120 33-121 (165)
162 KOG4162 Predicted calmodulin-b 98.3 1E-05 2.2E-10 77.7 12.6 116 5-120 653-770 (799)
163 KOG1173 Anaphase-promoting com 98.3 7.4E-06 1.6E-10 76.3 11.2 106 3-108 313-418 (611)
164 COG2956 Predicted N-acetylgluc 98.3 2.1E-05 4.5E-10 69.0 12.6 103 3-105 181-284 (389)
165 KOG2003 TPR repeat-containing 98.2 1.2E-05 2.6E-10 73.4 11.1 116 3-118 525-674 (840)
166 KOG1840 Kinesin light chain [C 98.2 7E-06 1.5E-10 77.5 10.1 97 4-100 201-313 (508)
167 KOG1127 TPR repeat-containing 98.2 1.9E-05 4E-10 77.9 13.0 104 1-104 1-108 (1238)
168 PF12569 NARP1: NMDA receptor- 98.2 3.2E-05 6.9E-10 73.6 14.2 93 7-99 199-291 (517)
169 KOG1840 Kinesin light chain [C 98.2 8.8E-06 1.9E-10 76.8 10.3 118 3-120 242-383 (508)
170 COG4700 Uncharacterized protei 98.2 4.2E-05 9E-10 62.3 12.7 102 4-105 91-195 (251)
171 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 2.6E-05 5.7E-10 71.6 13.1 105 13-120 180-284 (395)
172 KOG1128 Uncharacterized conser 98.2 4.8E-06 1E-10 79.6 8.4 81 40-120 489-569 (777)
173 KOG0495 HAT repeat protein [RN 98.2 2.6E-05 5.6E-10 74.0 13.1 107 13-120 629-735 (913)
174 PRK14720 transcript cleavage f 98.2 3.2E-05 7E-10 77.3 13.9 111 4-115 118-268 (906)
175 KOG0495 HAT repeat protein [RN 98.2 2.6E-05 5.7E-10 74.0 12.4 116 4-119 653-768 (913)
176 PRK10866 outer membrane biogen 98.2 0.00013 2.7E-09 63.1 15.5 110 4-113 71-218 (243)
177 PF12688 TPR_5: Tetratrico pep 98.1 2.3E-05 4.9E-10 60.1 9.5 84 37-120 2-91 (120)
178 PF13428 TPR_14: Tetratricopep 98.1 6E-06 1.3E-10 51.5 5.0 42 37-78 2-43 (44)
179 PF14938 SNAP: Soluble NSF att 98.1 2.6E-05 5.6E-10 68.8 10.8 103 2-104 114-230 (282)
180 KOG4234 TPR repeat-containing 98.1 2.1E-05 4.6E-10 64.7 9.3 68 5-72 137-204 (271)
181 PF04733 Coatomer_E: Coatomer 98.1 3.7E-05 8.1E-10 68.1 11.5 90 17-106 182-272 (290)
182 KOG1174 Anaphase-promoting com 98.1 3.7E-05 8.1E-10 69.5 11.3 116 5-120 235-384 (564)
183 cd06472 ACD_ScHsp26_like Alpha 98.1 1.9E-05 4E-10 57.6 7.8 76 175-250 1-92 (92)
184 KOG1127 TPR repeat-containing 98.1 1.6E-05 3.4E-10 78.4 8.6 114 4-117 564-677 (1238)
185 PF04733 Coatomer_E: Coatomer 98.1 5.9E-05 1.3E-09 66.8 11.6 114 6-119 135-250 (290)
186 PF00515 TPR_1: Tetratricopept 98.0 7.6E-06 1.7E-10 47.8 3.9 32 71-102 2-33 (34)
187 PF03704 BTAD: Bacterial trans 98.0 0.00019 4.2E-09 56.6 13.2 95 4-98 8-124 (146)
188 PRK10803 tol-pal system protei 98.0 5.5E-05 1.2E-09 66.0 10.8 84 36-119 142-232 (263)
189 KOG1156 N-terminal acetyltrans 98.0 6.1E-05 1.3E-09 71.4 11.6 87 12-98 85-171 (700)
190 PF12569 NARP1: NMDA receptor- 98.0 0.00016 3.4E-09 68.9 14.7 70 36-105 194-263 (517)
191 PF13431 TPR_17: Tetratricopep 98.0 5.3E-06 1.1E-10 48.7 2.8 32 59-90 2-33 (34)
192 PF07719 TPR_2: Tetratricopept 98.0 1.4E-05 3E-10 46.5 4.6 33 71-103 2-34 (34)
193 KOG4648 Uncharacterized conser 98.0 1E-05 2.3E-10 71.4 5.7 82 39-120 100-181 (536)
194 COG0071 IbpA Molecular chapero 98.0 3.8E-05 8.2E-10 61.0 8.4 81 173-253 40-135 (146)
195 PF00515 TPR_1: Tetratricopept 98.0 1.7E-05 3.8E-10 46.2 4.6 33 37-69 2-34 (34)
196 COG3118 Thioredoxin domain-con 98.0 0.00033 7.2E-09 61.0 14.2 97 4-100 136-266 (304)
197 PF13428 TPR_14: Tetratricopep 97.9 2.1E-05 4.6E-10 49.0 4.6 42 71-112 2-43 (44)
198 PF13431 TPR_17: Tetratricopep 97.9 1.1E-05 2.5E-10 47.3 3.1 33 24-56 1-33 (34)
199 KOG3785 Uncharacterized conser 97.9 0.00012 2.6E-09 65.1 10.8 87 10-96 30-117 (557)
200 KOG4379 Uncharacterized conser 97.9 1.8E-05 3.9E-10 71.6 5.7 85 174-262 290-377 (596)
201 KOG2376 Signal recognition par 97.9 0.00025 5.4E-09 66.7 12.9 100 4-106 14-146 (652)
202 PF14853 Fis1_TPR_C: Fis1 C-te 97.9 7.7E-05 1.7E-09 48.3 6.7 49 71-119 2-50 (53)
203 KOG4340 Uncharacterized conser 97.8 0.00034 7.3E-09 61.1 12.0 110 11-124 19-128 (459)
204 PF12968 DUF3856: Domain of Un 97.8 0.00071 1.5E-08 51.1 12.0 94 5-98 12-128 (144)
205 PF13512 TPR_18: Tetratricopep 97.8 0.0002 4.4E-09 56.1 9.3 72 35-106 9-83 (142)
206 PF07719 TPR_2: Tetratricopept 97.8 5.9E-05 1.3E-09 43.8 4.8 32 37-68 2-33 (34)
207 cd06464 ACD_sHsps-like Alpha-c 97.8 0.00012 2.7E-09 52.3 7.4 74 177-250 1-88 (88)
208 KOG3785 Uncharacterized conser 97.8 0.00018 3.9E-09 64.1 9.6 113 8-120 63-201 (557)
209 cd06471 ACD_LpsHSP_like Group 97.8 0.00012 2.7E-09 53.3 7.4 75 175-250 2-93 (93)
210 COG1729 Uncharacterized protei 97.8 0.00023 4.9E-09 61.4 9.9 82 39-120 144-231 (262)
211 PF00011 HSP20: Hsp20/alpha cr 97.8 0.00018 3.8E-09 53.3 8.1 77 177-253 1-90 (102)
212 KOG2376 Signal recognition par 97.8 0.00071 1.5E-08 63.8 13.6 90 6-98 83-203 (652)
213 PF14938 SNAP: Soluble NSF att 97.7 0.00013 2.9E-09 64.3 8.3 98 3-101 36-146 (282)
214 PRK10153 DNA-binding transcrip 97.7 0.00024 5.3E-09 67.8 9.8 67 4-71 422-488 (517)
215 KOG4340 Uncharacterized conser 97.6 0.0002 4.4E-09 62.4 7.5 63 3-65 145-207 (459)
216 KOG1130 Predicted G-alpha GTPa 97.6 3.8E-05 8.3E-10 69.4 3.0 97 3-99 196-304 (639)
217 KOG2471 TPR repeat-containing 97.6 0.00017 3.7E-09 66.5 6.8 115 3-117 241-382 (696)
218 KOG2053 Mitochondrial inherita 97.6 0.0018 3.8E-08 63.8 14.0 99 8-107 15-113 (932)
219 COG3071 HemY Uncharacterized e 97.6 0.0029 6.4E-08 57.1 14.2 117 4-120 86-203 (400)
220 KOG3364 Membrane protein invol 97.6 0.0021 4.5E-08 49.7 11.3 86 35-120 31-121 (149)
221 PRK10941 hypothetical protein; 97.6 0.00077 1.7E-08 58.9 10.3 78 37-114 182-259 (269)
222 COG0457 NrfG FOG: TPR repeat [ 97.6 0.0038 8.2E-08 50.2 14.1 98 5-102 98-199 (291)
223 KOG0546 HSP90 co-chaperone CPR 97.6 0.00012 2.6E-09 65.0 5.1 117 4-120 224-359 (372)
224 PF06552 TOM20_plant: Plant sp 97.5 0.00095 2.1E-08 54.2 9.4 69 2-70 25-114 (186)
225 COG2976 Uncharacterized protei 97.5 0.0022 4.8E-08 52.7 11.6 98 4-102 91-191 (207)
226 PF05843 Suf: Suppressor of fo 97.4 0.0035 7.6E-08 55.3 13.1 101 4-104 3-104 (280)
227 KOG4814 Uncharacterized conser 97.4 0.0015 3.3E-08 62.2 11.1 96 4-99 356-457 (872)
228 COG4785 NlpI Lipoprotein NlpI, 97.4 0.0011 2.3E-08 55.6 8.5 70 1-70 98-167 (297)
229 PF04781 DUF627: Protein of un 97.4 0.0031 6.8E-08 47.1 10.0 93 8-100 2-108 (111)
230 KOG0545 Aryl-hydrocarbon recep 97.4 0.0028 6E-08 54.0 10.9 71 5-75 233-303 (329)
231 PF13181 TPR_8: Tetratricopept 97.4 0.00029 6.4E-09 40.8 3.7 31 71-101 2-32 (34)
232 KOG3824 Huntingtin interacting 97.3 0.0011 2.4E-08 58.1 7.4 75 5-79 119-193 (472)
233 COG0457 NrfG FOG: TPR repeat [ 97.2 0.0092 2E-07 47.9 12.6 93 11-103 139-235 (291)
234 COG4105 ComL DNA uptake lipopr 97.2 0.023 5E-07 48.8 14.8 116 3-118 72-215 (254)
235 PF15015 NYD-SP12_N: Spermatog 97.2 0.0033 7.1E-08 57.3 10.0 91 6-96 180-288 (569)
236 PF13181 TPR_8: Tetratricopept 97.2 0.00077 1.7E-08 39.0 4.0 32 37-68 2-33 (34)
237 KOG4642 Chaperone-dependent E3 97.2 0.00067 1.5E-08 57.4 5.0 78 39-116 13-90 (284)
238 KOG2796 Uncharacterized conser 97.1 0.0033 7.2E-08 54.1 9.0 99 6-104 216-320 (366)
239 PF13174 TPR_6: Tetratricopept 97.1 0.00097 2.1E-08 38.1 4.2 31 72-102 2-32 (33)
240 KOG3081 Vesicle coat complex C 97.1 0.013 2.9E-07 50.4 12.5 80 39-118 172-255 (299)
241 KOG4555 TPR repeat-containing 97.1 0.0027 5.9E-08 49.0 7.2 65 39-103 46-110 (175)
242 COG4700 Uncharacterized protei 97.1 0.017 3.6E-07 47.5 12.1 116 4-120 126-248 (251)
243 KOG1915 Cell cycle control pro 97.0 0.012 2.6E-07 54.6 12.2 101 4-104 75-175 (677)
244 PRK10941 hypothetical protein; 97.0 0.0069 1.5E-07 53.0 10.4 75 6-80 185-259 (269)
245 PF10300 DUF3808: Protein of u 97.0 0.007 1.5E-07 57.3 11.2 94 14-107 245-342 (468)
246 KOG0551 Hsp90 co-chaperone CNS 97.0 0.0067 1.5E-07 53.8 10.1 84 36-119 81-168 (390)
247 PF05843 Suf: Suppressor of fo 97.0 0.017 3.6E-07 51.0 12.9 108 5-112 38-149 (280)
248 COG3071 HemY Uncharacterized e 97.0 0.015 3.2E-07 52.6 12.4 110 7-120 268-377 (400)
249 KOG1130 Predicted G-alpha GTPa 97.0 0.0023 4.9E-08 58.3 7.3 117 4-120 237-371 (639)
250 PF10300 DUF3808: Protein of u 97.0 0.0066 1.4E-07 57.5 10.8 97 5-101 270-378 (468)
251 PF09613 HrpB1_HrpK: Bacterial 97.0 0.055 1.2E-06 43.3 14.3 108 4-113 12-119 (160)
252 cd06479 ACD_HspB7_like Alpha c 97.0 0.0043 9.3E-08 44.0 7.3 72 179-250 4-81 (81)
253 PF03704 BTAD: Bacterial trans 97.0 0.006 1.3E-07 48.0 8.9 61 4-64 64-124 (146)
254 cd06475 ACD_HspB1_like Alpha c 97.0 0.0045 9.8E-08 44.4 7.2 73 176-248 3-84 (86)
255 PF14853 Fis1_TPR_C: Fis1 C-te 97.0 0.0044 9.5E-08 40.1 6.3 43 37-79 2-44 (53)
256 cd06526 metazoan_ACD Alpha-cry 96.9 0.004 8.8E-08 44.3 6.8 68 183-250 7-83 (83)
257 KOG2796 Uncharacterized conser 96.9 0.014 3.1E-07 50.3 11.0 116 5-120 180-302 (366)
258 cd06497 ACD_alphaA-crystallin_ 96.9 0.0053 1.2E-07 44.1 7.1 72 179-250 6-86 (86)
259 smart00028 TPR Tetratricopepti 96.8 0.0024 5.3E-08 35.1 4.2 32 71-102 2-33 (34)
260 cd06498 ACD_alphaB-crystallin_ 96.8 0.0073 1.6E-07 43.2 7.2 71 181-251 5-84 (84)
261 PF13174 TPR_6: Tetratricopept 96.8 0.0029 6.3E-08 36.0 4.2 30 5-34 3-32 (33)
262 KOG0376 Serine-threonine phosp 96.8 0.0021 4.5E-08 59.4 5.3 78 6-83 42-119 (476)
263 KOG1915 Cell cycle control pro 96.8 0.025 5.5E-07 52.5 12.0 106 14-120 378-487 (677)
264 KOG1941 Acetylcholine receptor 96.7 0.0064 1.4E-07 54.6 7.4 95 5-99 125-235 (518)
265 KOG2396 HAT (Half-A-TPR) repea 96.7 0.026 5.7E-07 52.6 11.6 91 19-109 88-179 (568)
266 KOG4507 Uncharacterized conser 96.7 0.01 2.3E-07 56.2 9.1 102 14-115 619-721 (886)
267 PF14561 TPR_20: Tetratricopep 96.7 0.022 4.7E-07 41.3 8.9 49 21-69 7-55 (90)
268 PLN03081 pentatricopeptide (PP 96.7 0.027 5.9E-07 56.0 12.6 90 8-99 468-557 (697)
269 PF09986 DUF2225: Uncharacteri 96.6 0.035 7.5E-07 47.0 11.2 91 14-104 89-199 (214)
270 KOG4151 Myosin assembly protei 96.6 0.013 2.9E-07 57.1 9.6 115 3-117 54-174 (748)
271 KOG3824 Huntingtin interacting 96.6 0.0099 2.1E-07 52.3 7.9 76 37-112 117-192 (472)
272 KOG3081 Vesicle coat complex C 96.6 0.049 1.1E-06 47.1 11.9 91 15-105 186-277 (299)
273 cd06470 ACD_IbpA-B_like Alpha- 96.6 0.019 4.1E-07 41.5 8.2 73 176-250 3-90 (90)
274 PRK04841 transcriptional regul 96.6 0.027 5.9E-07 57.5 12.4 93 7-99 457-560 (903)
275 PRK10743 heat shock protein Ib 96.6 0.018 3.8E-07 45.2 8.4 75 175-251 36-124 (137)
276 cd06478 ACD_HspB4-5-6 Alpha-cr 96.5 0.013 2.8E-07 41.8 6.8 71 180-250 4-83 (83)
277 KOG1586 Protein required for f 96.5 0.11 2.3E-06 44.2 12.8 101 5-105 116-230 (288)
278 smart00028 TPR Tetratricopepti 96.5 0.0053 1.2E-07 33.6 3.7 31 38-68 3-33 (34)
279 PF13176 TPR_7: Tetratricopept 96.5 0.0043 9.4E-08 36.6 3.4 25 73-97 2-26 (36)
280 COG4976 Predicted methyltransf 96.4 0.0051 1.1E-07 51.9 4.8 59 11-69 4-62 (287)
281 PRK04841 transcriptional regul 96.4 0.027 5.9E-07 57.5 11.1 96 5-100 494-603 (903)
282 PLN03218 maturation of RBCL 1; 96.4 0.11 2.4E-06 54.0 15.2 89 9-98 691-782 (1060)
283 KOG2053 Mitochondrial inherita 96.4 0.093 2E-06 52.1 13.6 100 5-105 46-145 (932)
284 PF04184 ST7: ST7 protein; In 96.3 0.048 1E-06 51.0 11.1 100 7-106 264-382 (539)
285 PF10602 RPN7: 26S proteasome 96.3 0.078 1.7E-06 43.4 11.3 98 3-100 37-143 (177)
286 PLN03218 maturation of RBCL 1; 96.3 0.12 2.7E-06 53.6 14.9 88 10-98 550-642 (1060)
287 PF13176 TPR_7: Tetratricopept 96.3 0.0089 1.9E-07 35.2 4.1 29 38-66 1-29 (36)
288 PLN03081 pentatricopeptide (PP 96.3 0.03 6.6E-07 55.7 10.2 26 72-97 393-418 (697)
289 PRK11597 heat shock chaperone 96.2 0.033 7.2E-07 43.9 8.0 75 175-251 34-122 (142)
290 KOG1585 Protein required for f 96.2 0.14 2.9E-06 43.9 12.0 100 4-103 33-143 (308)
291 KOG1586 Protein required for f 96.1 0.09 2E-06 44.7 10.7 93 12-104 83-188 (288)
292 cd06476 ACD_HspB2_like Alpha c 96.1 0.036 7.8E-07 39.4 7.2 70 181-250 5-83 (83)
293 KOG1070 rRNA processing protei 96.1 0.071 1.5E-06 55.3 11.6 108 8-115 1536-1645(1710)
294 COG4976 Predicted methyltransf 96.0 0.011 2.4E-07 49.9 4.8 63 44-106 3-65 (287)
295 KOG2471 TPR repeat-containing 96.0 0.01 2.2E-07 55.2 4.6 78 6-83 287-382 (696)
296 TIGR02561 HrpB1_HrpK type III 95.9 0.11 2.3E-06 41.1 9.7 84 4-87 12-95 (153)
297 KOG1308 Hsp70-interacting prot 95.9 0.0019 4.1E-08 57.3 -0.1 75 46-120 124-198 (377)
298 PF10579 Rapsyn_N: Rapsyn N-te 95.9 0.081 1.7E-06 37.0 7.9 64 2-65 6-72 (80)
299 PRK13184 pknD serine/threonine 95.9 0.11 2.5E-06 52.9 12.2 111 9-120 482-602 (932)
300 PLN03077 Protein ECB2; Provisi 95.9 0.093 2E-06 53.5 11.9 105 8-115 595-702 (857)
301 PF09613 HrpB1_HrpK: Bacterial 95.9 0.13 2.9E-06 41.1 10.2 85 36-120 10-94 (160)
302 COG2912 Uncharacterized conser 95.9 0.056 1.2E-06 46.9 8.7 76 38-113 183-258 (269)
303 PF14561 TPR_20: Tetratricopep 95.9 0.093 2E-06 37.9 8.5 65 55-119 7-73 (90)
304 cd06481 ACD_HspB9_like Alpha c 95.8 0.042 9.1E-07 39.5 6.6 68 181-248 5-85 (87)
305 PF13281 DUF4071: Domain of un 95.8 0.33 7.1E-06 44.4 13.8 107 6-112 183-347 (374)
306 KOG2610 Uncharacterized conser 95.8 0.071 1.5E-06 47.6 9.1 54 42-95 181-234 (491)
307 KOG1585 Protein required for f 95.8 0.092 2E-06 44.9 9.3 94 6-99 114-219 (308)
308 PLN03077 Protein ECB2; Provisi 95.7 0.12 2.6E-06 52.6 12.0 108 4-113 556-667 (857)
309 PF04910 Tcf25: Transcriptiona 95.7 0.2 4.3E-06 45.9 12.0 78 28-105 32-139 (360)
310 PF04184 ST7: ST7 protein; In 95.6 0.14 3E-06 48.1 10.7 91 10-102 176-291 (539)
311 KOG0530 Protein farnesyltransf 95.5 0.5 1.1E-05 40.9 12.8 105 15-119 56-162 (318)
312 PF08190 PIH1: pre-RNA process 95.4 0.079 1.7E-06 47.6 8.5 65 181-248 259-326 (328)
313 COG5191 Uncharacterized conser 95.2 0.053 1.1E-06 47.9 6.2 85 25-109 96-181 (435)
314 KOG2610 Uncharacterized conser 95.2 0.29 6.3E-06 43.9 10.8 98 8-105 109-210 (491)
315 PF02259 FAT: FAT domain; Int 95.2 0.57 1.2E-05 42.0 13.3 119 2-120 146-308 (352)
316 KOG1941 Acetylcholine receptor 95.1 0.11 2.4E-06 46.9 8.0 94 6-99 166-275 (518)
317 COG2912 Uncharacterized conser 95.1 0.11 2.3E-06 45.2 7.7 71 9-79 188-258 (269)
318 KOG4814 Uncharacterized conser 95.0 0.34 7.4E-06 46.8 11.1 71 37-107 355-431 (872)
319 cd06482 ACD_HspB10 Alpha cryst 94.8 0.16 3.4E-06 36.5 6.7 66 181-246 6-83 (87)
320 PF12862 Apc5: Anaphase-promot 94.8 0.23 5E-06 36.0 7.8 56 11-66 7-71 (94)
321 PF07079 DUF1347: Protein of u 94.8 1.1 2.4E-05 41.7 13.6 112 5-117 382-543 (549)
322 COG0790 FOG: TPR repeat, SEL1 94.7 1.3 2.8E-05 38.8 13.8 105 3-111 110-230 (292)
323 TIGR02561 HrpB1_HrpK type III 94.6 0.45 9.8E-06 37.6 9.3 84 37-120 11-94 (153)
324 PF02259 FAT: FAT domain; Int 94.5 0.98 2.1E-05 40.4 13.1 99 4-102 186-341 (352)
325 KOG1070 rRNA processing protei 94.4 0.62 1.3E-05 48.8 12.2 98 4-101 1566-1665(1710)
326 PF13374 TPR_10: Tetratricopep 94.4 0.1 2.2E-06 31.1 4.4 27 38-64 4-30 (42)
327 KOG3364 Membrane protein invol 94.4 0.57 1.2E-05 36.5 9.3 74 4-77 34-112 (149)
328 PF13281 DUF4071: Domain of un 94.3 0.93 2E-05 41.5 12.2 93 10-102 149-258 (374)
329 PF08631 SPO22: Meiosis protei 94.2 2.4 5.3E-05 37.2 14.4 100 2-101 35-152 (278)
330 PF13374 TPR_10: Tetratricopep 94.1 0.1 2.2E-06 31.1 4.0 29 71-99 3-31 (42)
331 cd06477 ACD_HspB3_Like Alpha c 94.1 0.42 9E-06 34.0 7.6 68 180-247 4-80 (83)
332 COG3898 Uncharacterized membra 94.0 0.78 1.7E-05 42.0 10.7 91 6-98 124-216 (531)
333 PF14863 Alkyl_sulf_dimr: Alky 93.9 0.22 4.7E-06 39.2 6.4 50 36-85 70-119 (141)
334 PF12862 Apc5: Anaphase-promot 93.7 0.32 6.9E-06 35.3 6.6 58 44-101 6-72 (94)
335 COG3629 DnrI DNA-binding trans 93.5 1.2 2.6E-05 39.2 10.8 64 36-99 153-216 (280)
336 COG2976 Uncharacterized protei 93.4 2.1 4.6E-05 35.5 11.4 59 38-96 91-152 (207)
337 KOG2047 mRNA splicing factor [ 93.3 1.7 3.7E-05 42.3 12.2 88 14-101 489-581 (835)
338 PF08631 SPO22: Meiosis protei 93.2 2 4.3E-05 37.7 12.1 97 11-107 2-124 (278)
339 PRK15180 Vi polysaccharide bio 93.2 0.88 1.9E-05 42.7 9.9 95 10-104 297-391 (831)
340 COG3914 Spy Predicted O-linked 93.1 1.7 3.6E-05 41.8 11.7 99 10-108 75-180 (620)
341 KOG1550 Extracellular protein 93.0 1.6 3.4E-05 42.4 12.1 90 7-100 293-394 (552)
342 KOG4507 Uncharacterized conser 93.0 0.36 7.9E-06 46.2 7.2 71 5-75 645-715 (886)
343 PF10516 SHNi-TPR: SHNi-TPR; 92.6 0.21 4.6E-06 29.9 3.4 28 38-65 3-30 (38)
344 PF07720 TPR_3: Tetratricopept 92.5 0.39 8.5E-06 28.3 4.5 32 71-102 2-35 (36)
345 KOG2047 mRNA splicing factor [ 92.5 4.9 0.00011 39.3 13.9 115 2-117 425-558 (835)
346 PF08424 NRDE-2: NRDE-2, neces 92.4 2.5 5.4E-05 38.0 11.8 54 20-73 49-102 (321)
347 KOG1550 Extracellular protein 92.4 2.2 4.7E-05 41.4 12.1 95 4-102 327-429 (552)
348 COG3898 Uncharacterized membra 92.2 4.2 9E-05 37.4 12.6 92 12-104 198-297 (531)
349 PF05455 GvpH: GvpH; InterPro 92.2 1 2.2E-05 36.6 8.0 75 176-253 94-170 (177)
350 cd02682 MIT_AAA_Arch MIT: doma 91.9 0.72 1.6E-05 32.1 5.9 30 2-31 6-35 (75)
351 KOG2396 HAT (Half-A-TPR) repea 91.9 1.1 2.5E-05 42.1 8.9 62 13-74 116-178 (568)
352 PF04910 Tcf25: Transcriptiona 91.9 2 4.4E-05 39.3 10.7 98 4-101 105-224 (360)
353 PF09986 DUF2225: Uncharacteri 91.7 1.3 2.7E-05 37.5 8.5 61 17-77 140-207 (214)
354 PF12968 DUF3856: Domain of Un 91.4 4.9 0.00011 30.7 10.2 81 37-117 8-107 (144)
355 PF07721 TPR_4: Tetratricopept 91.2 0.28 6.1E-06 26.4 2.7 23 72-94 3-25 (26)
356 KOG2561 Adaptor protein NUB1, 91.2 0.84 1.8E-05 42.2 7.2 98 1-98 162-295 (568)
357 PF10373 EST1_DNA_bind: Est1 D 91.2 1 2.3E-05 39.0 7.8 45 55-99 1-45 (278)
358 PF08424 NRDE-2: NRDE-2, neces 90.9 3.9 8.4E-05 36.7 11.4 53 53-105 48-100 (321)
359 COG3629 DnrI DNA-binding trans 90.8 1.6 3.5E-05 38.4 8.4 62 4-65 155-216 (280)
360 cd06480 ACD_HspB8_like Alpha-c 90.7 1.9 4.2E-05 31.1 7.4 69 180-248 12-89 (91)
361 KOG3617 WD40 and TPR repeat-co 90.5 2.5 5.4E-05 42.4 10.0 96 4-99 860-996 (1416)
362 PHA02537 M terminase endonucle 90.4 0.75 1.6E-05 39.2 5.9 107 13-120 94-227 (230)
363 COG5191 Uncharacterized conser 90.4 0.58 1.3E-05 41.6 5.2 67 9-75 114-181 (435)
364 PF07720 TPR_3: Tetratricopept 90.4 1 2.3E-05 26.4 4.8 20 5-24 4-23 (36)
365 PF10516 SHNi-TPR: SHNi-TPR; 90.3 0.64 1.4E-05 27.8 3.9 30 2-31 1-30 (38)
366 PF10255 Paf67: RNA polymerase 90.0 2 4.4E-05 39.8 8.8 96 6-102 126-231 (404)
367 PF10373 EST1_DNA_bind: Est1 D 89.9 6.6 0.00014 33.9 11.7 62 21-82 1-62 (278)
368 PF07721 TPR_4: Tetratricopept 89.4 0.5 1.1E-05 25.4 2.7 23 38-60 3-25 (26)
369 PF10602 RPN7: 26S proteasome 89.3 4.7 0.0001 32.9 9.6 66 36-101 36-104 (177)
370 KOG2422 Uncharacterized conser 89.3 11 0.00023 36.5 12.9 91 15-105 251-378 (665)
371 KOG0530 Protein farnesyltransf 89.2 6.5 0.00014 34.3 10.5 87 16-102 92-179 (318)
372 KOG0546 HSP90 co-chaperone CPR 89.2 0.38 8.2E-06 43.3 3.2 73 8-80 281-353 (372)
373 PRK13184 pknD serine/threonine 89.0 4.9 0.00011 41.4 11.3 91 16-107 533-628 (932)
374 PF09670 Cas_Cas02710: CRISPR- 88.8 8.6 0.00019 35.4 12.0 62 3-64 132-197 (379)
375 KOG0686 COP9 signalosome, subu 88.3 4.8 0.0001 37.1 9.6 95 4-98 152-257 (466)
376 KOG0529 Protein geranylgeranyl 88.2 16 0.00035 33.7 12.9 104 15-118 41-159 (421)
377 cd02683 MIT_1 MIT: domain cont 88.2 4.1 8.9E-05 28.4 7.3 30 2-31 6-35 (77)
378 KOG2300 Uncharacterized conser 88.1 14 0.0003 35.0 12.6 92 6-100 371-475 (629)
379 PF14863 Alkyl_sulf_dimr: Alky 87.9 2.7 5.9E-05 33.0 7.0 47 4-50 72-118 (141)
380 KOG1258 mRNA processing protei 87.8 14 0.00031 35.6 12.9 100 7-106 302-402 (577)
381 COG3118 Thioredoxin domain-con 87.7 3.4 7.3E-05 36.5 8.0 62 35-96 133-194 (304)
382 COG4649 Uncharacterized protei 87.7 14 0.00031 30.3 12.4 93 6-98 98-195 (221)
383 PF04781 DUF627: Protein of un 87.4 5.8 0.00013 29.7 8.1 65 42-106 2-80 (111)
384 cd02681 MIT_calpain7_1 MIT: do 87.4 0.94 2E-05 31.6 3.7 30 2-31 6-35 (76)
385 COG3914 Spy Predicted O-linked 87.3 9.9 0.00021 36.7 11.4 99 14-112 42-144 (620)
386 KOG1839 Uncharacterized protei 87.2 1.3 2.7E-05 46.3 5.8 98 2-99 932-1044(1236)
387 COG4455 ImpE Protein of avirul 87.0 4.1 8.8E-05 34.6 7.8 62 8-69 7-68 (273)
388 KOG0529 Protein geranylgeranyl 86.9 11 0.00023 34.9 11.0 104 13-116 86-195 (421)
389 PF07079 DUF1347: Protein of u 86.8 15 0.00033 34.6 12.0 95 5-99 9-108 (549)
390 KOG2581 26S proteasome regulat 86.8 17 0.00036 33.7 12.1 68 38-105 211-282 (493)
391 PF04212 MIT: MIT (microtubule 86.6 1.5 3.2E-05 29.7 4.3 30 2-31 5-34 (69)
392 PF11207 DUF2989: Protein of u 86.5 8 0.00017 32.3 9.3 72 19-91 123-199 (203)
393 COG0790 FOG: TPR repeat, SEL1 86.4 21 0.00046 31.0 14.0 83 17-104 170-271 (292)
394 PF11817 Foie-gras_1: Foie gra 86.4 3.3 7.1E-05 35.7 7.4 61 36-96 178-244 (247)
395 COG3947 Response regulator con 86.2 3.2 7E-05 36.6 7.0 59 38-96 281-339 (361)
396 PF10579 Rapsyn_N: Rapsyn N-te 86.1 8 0.00017 27.2 7.7 58 38-95 8-68 (80)
397 KOG2041 WD40 repeat protein [G 86.1 4 8.7E-05 40.2 8.2 46 2-55 796-841 (1189)
398 PRK15180 Vi polysaccharide bio 85.7 2.6 5.6E-05 39.8 6.6 97 8-104 329-425 (831)
399 PF10345 Cohesin_load: Cohesin 85.1 33 0.00071 33.7 14.5 110 3-113 60-184 (608)
400 COG4455 ImpE Protein of avirul 85.1 12 0.00025 32.0 9.5 74 44-117 9-85 (273)
401 KOG3783 Uncharacterized conser 85.0 12 0.00026 35.8 10.6 83 37-119 450-540 (546)
402 cd02680 MIT_calpain7_2 MIT: do 84.9 1.5 3.4E-05 30.4 3.7 29 3-31 7-35 (75)
403 TIGR03504 FimV_Cterm FimV C-te 84.7 3.2 6.9E-05 25.6 4.7 25 74-98 3-27 (44)
404 PF04053 Coatomer_WDAD: Coatom 84.3 15 0.00032 34.7 11.1 89 9-99 268-376 (443)
405 PF07219 HemY_N: HemY protein 84.2 4.9 0.00011 29.9 6.6 46 5-50 62-107 (108)
406 COG2909 MalT ATP-dependent tra 84.2 26 0.00057 35.5 13.1 95 6-100 419-527 (894)
407 smart00386 HAT HAT (Half-A-TPR 84.1 2.8 6.1E-05 22.8 4.1 29 16-44 1-29 (33)
408 PF11817 Foie-gras_1: Foie gra 84.1 9.1 0.0002 32.9 9.1 51 70-120 178-234 (247)
409 KOG0985 Vesicle coat protein c 83.9 8.7 0.00019 39.7 9.6 107 4-118 1196-1327(1666)
410 KOG1310 WD40 repeat protein [G 83.8 3.7 8E-05 39.2 6.7 82 39-120 377-461 (758)
411 COG4941 Predicted RNA polymera 83.6 8.4 0.00018 34.8 8.5 95 15-110 309-405 (415)
412 cd02678 MIT_VPS4 MIT: domain c 83.6 2.2 4.7E-05 29.5 4.1 30 2-31 6-35 (75)
413 PF09205 DUF1955: Domain of un 83.5 14 0.00029 29.0 8.6 62 5-66 88-150 (161)
414 cd02684 MIT_2 MIT: domain cont 83.4 3.6 7.9E-05 28.5 5.1 30 2-31 6-35 (75)
415 KOG2300 Uncharacterized conser 83.3 33 0.00072 32.7 12.5 115 3-120 8-136 (629)
416 KOG1914 mRNA cleavage and poly 83.3 8.1 0.00017 37.0 8.7 48 17-64 34-81 (656)
417 smart00745 MIT Microtubule Int 83.1 4 8.6E-05 28.1 5.3 29 3-31 9-37 (77)
418 PF11846 DUF3366: Domain of un 83.1 6.7 0.00014 32.2 7.6 50 52-102 127-176 (193)
419 KOG1839 Uncharacterized protei 82.8 4.5 9.8E-05 42.3 7.5 99 2-100 973-1087(1236)
420 KOG4563 Cell cycle-regulated h 82.8 2.8 6.1E-05 38.0 5.4 56 3-58 42-105 (400)
421 PF10255 Paf67: RNA polymerase 82.7 2.9 6.4E-05 38.7 5.7 59 39-98 125-192 (404)
422 PF11207 DUF2989: Protein of u 82.7 6.2 0.00013 32.9 7.0 46 11-56 149-198 (203)
423 cd02656 MIT MIT: domain contai 82.0 4.3 9.2E-05 27.9 5.1 29 3-31 7-35 (75)
424 cd02677 MIT_SNX15 MIT: domain 81.9 8.4 0.00018 26.7 6.5 30 2-31 6-35 (75)
425 cd02682 MIT_AAA_Arch MIT: doma 81.5 8.1 0.00018 26.8 6.2 25 90-114 33-57 (75)
426 PF06957 COPI_C: Coatomer (COP 80.8 10 0.00022 35.4 8.5 102 4-105 206-335 (422)
427 KOG3617 WD40 and TPR repeat-co 80.3 10 0.00022 38.3 8.6 76 12-97 810-885 (1416)
428 KOG0889 Histone acetyltransfer 79.6 17 0.00038 42.1 10.8 114 5-119 2777-2902(3550)
429 COG3947 Response regulator con 77.8 8.8 0.00019 34.0 6.6 58 5-62 282-339 (361)
430 PF13226 DUF4034: Domain of un 77.8 43 0.00092 29.5 11.0 113 8-120 6-149 (277)
431 COG4856 Uncharacterized protei 77.6 7.2 0.00016 35.5 6.2 74 179-253 64-137 (403)
432 KOG3783 Uncharacterized conser 77.6 18 0.00039 34.6 9.0 93 19-111 250-344 (546)
433 PF15015 NYD-SP12_N: Spermatog 77.3 5.8 0.00013 36.8 5.6 56 8-63 234-289 (569)
434 TIGR03504 FimV_Cterm FimV C-te 77.1 5.5 0.00012 24.6 3.8 25 6-30 3-27 (44)
435 PF10345 Cohesin_load: Cohesin 76.8 33 0.00071 33.8 11.2 89 6-94 305-428 (608)
436 KOG1914 mRNA cleavage and poly 76.4 37 0.00081 32.7 10.7 92 10-101 409-503 (656)
437 PRK15490 Vi polysaccharide bio 75.4 52 0.0011 32.1 11.8 89 4-94 7-98 (578)
438 TIGR02710 CRISPR-associated pr 75.2 57 0.0012 30.1 11.5 56 5-60 133-195 (380)
439 PF07163 Pex26: Pex26 protein; 75.1 43 0.00093 29.6 10.0 112 7-119 40-166 (309)
440 KOG4459 Membrane-associated pr 73.9 12 0.00026 35.0 6.8 114 4-120 33-183 (471)
441 KOG3807 Predicted membrane pro 73.8 71 0.0015 29.1 12.0 92 8-101 190-306 (556)
442 COG2015 Alkyl sulfatase and re 73.6 8.3 0.00018 36.4 5.7 50 37-86 453-502 (655)
443 COG5107 RNA14 Pre-mRNA 3'-end 72.9 66 0.0014 30.5 11.2 102 10-111 440-543 (660)
444 PF15469 Sec5: Exocyst complex 72.7 32 0.00068 28.0 8.6 27 85-111 154-180 (182)
445 smart00386 HAT HAT (Half-A-TPR 71.3 11 0.00024 20.2 4.0 24 52-75 3-26 (33)
446 PF04053 Coatomer_WDAD: Coatom 70.5 33 0.00071 32.4 9.1 58 33-90 344-409 (443)
447 COG2909 MalT ATP-dependent tra 70.0 64 0.0014 32.9 11.1 90 6-95 462-564 (894)
448 PF12739 TRAPPC-Trs85: ER-Golg 69.9 48 0.001 30.9 10.1 96 4-99 210-329 (414)
449 PF11846 DUF3366: Domain of un 68.4 23 0.0005 29.0 6.9 49 18-67 127-175 (193)
450 KOG0292 Vesicle coat complex C 68.1 93 0.002 32.0 11.7 104 5-108 994-1122(1202)
451 KOG1463 26S proteasome regulat 66.2 18 0.0004 32.7 6.0 92 8-99 134-238 (411)
452 KOG1924 RhoA GTPase effector D 66.1 1.5E+02 0.0032 30.2 12.5 18 14-31 377-394 (1102)
453 KOG1258 mRNA processing protei 66.1 1.4E+02 0.0029 29.2 13.4 106 9-114 373-485 (577)
454 PF03745 DUF309: Domain of unk 66.0 36 0.00078 22.6 7.2 52 6-57 3-60 (62)
455 TIGR02508 type_III_yscG type I 63.0 46 0.00099 24.7 6.6 41 74-119 43-83 (115)
456 PF10952 DUF2753: Protein of u 62.9 44 0.00095 25.7 6.7 60 4-63 3-77 (140)
457 KOG0890 Protein kinase of the 62.1 1.3E+02 0.0028 34.3 12.3 101 2-104 1670-1789(2382)
458 cd02683 MIT_1 MIT: domain cont 62.1 45 0.00097 23.1 6.3 22 41-62 11-32 (77)
459 PF08238 Sel1: Sel1 repeat; I 61.8 22 0.00048 20.2 4.2 29 71-99 2-37 (39)
460 cd02679 MIT_spastin MIT: domai 60.4 15 0.00033 25.7 3.7 16 17-32 4-19 (79)
461 PF12854 PPR_1: PPR repeat 60.2 23 0.0005 20.1 3.9 26 36-61 7-32 (34)
462 KOG4563 Cell cycle-regulated h 59.3 21 0.00045 32.6 5.2 58 38-95 43-108 (400)
463 PF02064 MAS20: MAS20 protein 58.8 19 0.00041 27.5 4.2 29 7-35 68-96 (121)
464 PF09477 Type_III_YscG: Bacter 58.6 76 0.0016 23.8 9.1 76 38-118 8-83 (116)
465 COG4941 Predicted RNA polymera 57.8 65 0.0014 29.3 7.9 71 8-78 335-407 (415)
466 PF04212 MIT: MIT (microtubule 57.4 55 0.0012 21.8 6.4 20 43-62 12-31 (69)
467 PF10938 YfdX: YfdX protein; 56.9 99 0.0021 24.6 9.1 97 2-98 2-145 (155)
468 KOG0739 AAA+-type ATPase [Post 56.8 49 0.0011 29.7 6.9 28 4-31 12-39 (439)
469 PF01535 PPR: PPR repeat; Int 55.0 24 0.00053 18.6 3.4 20 43-62 7-26 (31)
470 KOG3616 Selective LIM binding 54.8 42 0.00091 33.8 6.7 60 37-96 662-732 (1636)
471 PF10938 YfdX: YfdX protein; 54.7 51 0.0011 26.2 6.3 62 3-64 76-145 (155)
472 COG5159 RPN6 26S proteasome re 54.7 1.4E+02 0.003 26.7 9.3 48 6-53 7-62 (421)
473 PF13041 PPR_2: PPR repeat fam 54.6 37 0.00081 20.7 4.5 30 37-66 4-33 (50)
474 KOG0687 26S proteasome regulat 54.3 1.7E+02 0.0037 26.6 10.6 27 4-30 106-132 (393)
475 KOG2422 Uncharacterized conser 53.9 1.3E+02 0.0028 29.4 9.6 94 5-101 345-450 (665)
476 COG5107 RNA14 Pre-mRNA 3'-end 53.8 1.2E+02 0.0027 28.8 9.3 78 24-101 30-107 (660)
477 smart00745 MIT Microtubule Int 53.7 56 0.0012 22.2 5.7 16 48-63 20-35 (77)
478 PF09797 NatB_MDM20: N-acetylt 53.6 1.2E+02 0.0027 27.5 9.6 77 19-95 152-242 (365)
479 COG5159 RPN6 26S proteasome re 53.6 52 0.0011 29.3 6.5 94 7-100 130-236 (421)
480 PF05053 Menin: Menin; InterP 53.3 31 0.00068 33.3 5.5 45 19-63 296-345 (618)
481 smart00671 SEL1 Sel1-like repe 52.6 30 0.00065 19.2 3.6 27 72-98 3-33 (36)
482 PF13226 DUF4034: Domain of un 52.1 94 0.002 27.4 8.0 68 20-87 61-150 (277)
483 PF07219 HemY_N: HemY protein 51.5 85 0.0018 23.1 6.8 27 73-99 62-88 (108)
484 KOG0276 Vesicle coat complex C 51.0 73 0.0016 31.3 7.6 94 17-119 622-723 (794)
485 cd02656 MIT MIT: domain contai 50.8 67 0.0015 21.8 5.7 14 50-63 20-33 (75)
486 KOG1464 COP9 signalosome, subu 50.1 55 0.0012 28.9 6.1 51 14-64 39-93 (440)
487 PF02064 MAS20: MAS20 protein 50.1 44 0.00096 25.5 5.0 38 73-110 66-103 (121)
488 cd02681 MIT_calpain7_1 MIT: do 49.7 33 0.00071 23.8 3.9 22 76-97 12-33 (76)
489 TIGR00756 PPR pentatricopeptid 49.2 41 0.0009 18.0 4.1 22 42-63 6-27 (35)
490 KOG2758 Translation initiation 49.1 68 0.0015 29.0 6.6 63 2-64 129-195 (432)
491 PF04190 DUF410: Protein of un 49.0 1.8E+02 0.0039 25.2 11.2 90 6-95 14-115 (260)
492 PRK11619 lytic murein transgly 48.6 1.5E+02 0.0033 29.5 9.8 60 39-98 315-374 (644)
493 KOG1463 26S proteasome regulat 48.2 91 0.002 28.4 7.3 111 7-120 214-334 (411)
494 PF08969 USP8_dimer: USP8 dime 47.4 35 0.00075 25.5 4.1 30 2-31 38-67 (115)
495 PRK15490 Vi polysaccharide bio 45.6 1.4E+02 0.0031 29.2 8.8 57 2-60 42-98 (578)
496 KOG2114 Vacuolar assembly/sort 45.4 1.2E+02 0.0026 30.9 8.3 28 4-31 370-397 (933)
497 KOG2581 26S proteasome regulat 45.4 71 0.0015 29.8 6.3 59 11-69 218-280 (493)
498 KOG3807 Predicted membrane pro 44.8 2.4E+02 0.0052 25.8 9.4 60 40-99 279-340 (556)
499 PF04348 LppC: LppC putative l 44.8 7.2 0.00016 37.7 0.0 97 5-101 27-129 (536)
500 cd02678 MIT_VPS4 MIT: domain c 44.7 99 0.0022 21.1 6.3 13 49-61 19-31 (75)
No 1
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=100.00 E-value=2.1e-45 Score=333.27 Aligned_cols=248 Identities=71% Similarity=1.115 Sum_probs=212.9
Q ss_pred ChhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 023518 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (281)
Q Consensus 1 ma~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~ 80 (281)
|+..+..+|+.+|..|+|++|+.+|++++..+|+++.+|+++|.+|+++|++++|+.++++++.++|.+..+|+++|.+|
T Consensus 1 ~~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~ 80 (356)
T PLN03088 1 MAKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTAC 80 (356)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhhhCcCCCCCCCCCCCccccCCCCCCCCCCCCCccchhhhcc
Q 023518 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDV 160 (281)
Q Consensus 81 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (281)
+.+|+|++|+.+|+++++++|++..+..|+.+|..++.......+...+..+ +. +....+.+.
T Consensus 81 ~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~~~~~~~~~~~~~-~~---~~~~~~~~~------------- 143 (356)
T PLN03088 81 MKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEEEKDLVQPVPSDL-PS---SVTAPPVEE------------- 143 (356)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhccccccccccc-cc---ccccccccc-------------
Confidence 9999999999999999999999999999999999999765332221111100 00 000000000
Q ss_pred ccccccCCCCCCCCCcccccCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcCCCceeeeccccccccccCcceEEEe
Q 023518 161 SNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVL 240 (281)
Q Consensus 161 ~~~~p~~~p~~~k~r~~w~Qt~~~V~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~L~~~I~~~~s~~~v~ 240 (281)
....+..++..+++||+||||+++|+|+||+||+.++++.|+|++++|+|.|..++|..|.|.++||++|+|++|+++|.
T Consensus 144 ~~~~~~~~~~~~~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~ 223 (356)
T PLN03088 144 ADATPVVPPSKPKYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQILSVVIEVPGEDAYHLQPRLFGKIIPDKCKYEVL 223 (356)
T ss_pred cccCCCCCCCCCccccceeecCCEEEEEEEecCCChHHcEEEeecCEEEEEEecCCCcceeecccccccccccccEEEEe
Confidence 00112223445689999999999999999999999999999999999999999888889999999999999999999999
Q ss_pred CcEEEEEEeecCCCCCCccccCcCc
Q 023518 241 STKVEIRLAKAEPIQWSSLEFSKGA 265 (281)
Q Consensus 241 ~~kiei~L~K~~~~~W~~l~~~~~~ 265 (281)
++||||+|+|+++.+|++|++....
T Consensus 224 ~~Kiei~l~K~~~~~W~~L~~~~~~ 248 (356)
T PLN03088 224 STKIEIRLAKAEPITWASLEYGKGP 248 (356)
T ss_pred cceEEEEEecCCCCCccccccCCcc
Confidence 9999999999999999999977543
No 2
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=99.93 E-value=1.6e-25 Score=162.46 Aligned_cols=87 Identities=36% Similarity=0.566 Sum_probs=83.0
Q ss_pred CCcccccCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcCCCceeeeccccccccccCcceEEEeCcEEEEEEeecCC
Q 023518 174 YRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP 253 (281)
Q Consensus 174 ~r~~w~Qt~~~V~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~L~~~I~~~~s~~~v~~~kiei~L~K~~~ 253 (281)
+||||||++++|+|+||+||+.++++.|+|++++|+|.+..++|+.|.++++||++|+|++|++++.++||||+|+|+++
T Consensus 1 ~R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~l~L~~~I~~~~s~~~v~~~kvei~L~K~~~ 80 (87)
T cd06488 1 CRHDWHQTGSHVVVSVYAKNSNPELSVVEANSTVLTIHIVFEGNKEFQLDIELWGVIDVEKSSVNMLPTKVEIKLRKAEP 80 (87)
T ss_pred CCccEeeCCCEEEEEEEECcCCccceEEEecCCEEEEEEECCCCceEEEEeeccceEChhHcEEEecCcEEEEEEEeCCC
Confidence 59999999999999999999999999999999999998877778889999999999999999999999999999999999
Q ss_pred CCCCccc
Q 023518 254 IQWSSLE 260 (281)
Q Consensus 254 ~~W~~l~ 260 (281)
..|++|+
T Consensus 81 ~~W~~Le 87 (87)
T cd06488 81 GSWAKLE 87 (87)
T ss_pred CcCccCC
Confidence 9999986
No 3
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=99.92 E-value=2.7e-25 Score=174.94 Aligned_cols=92 Identities=48% Similarity=0.804 Sum_probs=88.3
Q ss_pred CCCCcccccCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcCCCceeeeccccccccccCcceEEEeCcEEEEEEeec
Q 023518 172 PKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKA 251 (281)
Q Consensus 172 ~k~r~~w~Qt~~~V~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~L~~~I~~~~s~~~v~~~kiei~L~K~ 251 (281)
+++|||||||.+.|+|+||.||+++++|.|+|+.+.|++.+..++|+.|.|.++|||+|+|+.|+|+++++||||+|.|.
T Consensus 2 ~k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~~l~~~~~~~~g~~~~l~~~L~~~I~pe~~s~k~~stKVEI~L~K~ 81 (196)
T KOG1309|consen 2 MKIRHDWYQTETSVVITIFAKNVPKEDVNVEISENTLSIVIQLPSGSEYNLQLKLYHEIIPEKSSFKVFSTKVEITLAKA 81 (196)
T ss_pred CcccceeecCCceEEEEEEecCCCccceeEEeecceEEEEEecCCchhhhhhHHhcccccccceeeEeeeeeEEEEeccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccCc
Q 023518 252 EPIQWSSLEFSK 263 (281)
Q Consensus 252 ~~~~W~~l~~~~ 263 (281)
+.++|..|++-.
T Consensus 82 ~~irW~~Le~g~ 93 (196)
T KOG1309|consen 82 EIIRWESLEKGK 93 (196)
T ss_pred cchhhhhhhccc
Confidence 889999999533
No 4
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=99.90 E-value=1.7e-23 Score=151.13 Aligned_cols=84 Identities=37% Similarity=0.757 Sum_probs=80.7
Q ss_pred ccccCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcCCCceeeeccccccccccCcceEEEeCcEEEEEEeecCCCCC
Q 023518 177 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQW 256 (281)
Q Consensus 177 ~w~Qt~~~V~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~L~~~I~~~~s~~~v~~~kiei~L~K~~~~~W 256 (281)
||||++++|+|+|+++|++++++.|+|++++|+|.+..++|..|.++++||++|+|++|+|++.++||||+|+|+++..|
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~W 80 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEKRELSATVKLPSGNDYSLKLHLLHPIVPEQSSYKILSTKIEIKLKKTEAIRW 80 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeCCEEEEEEECCCCCcEEEeeecCceecchhcEEEEeCcEEEEEEEcCCCCCC
Confidence 79999999999999999999999999999999999988777789999999999999999999999999999999998999
Q ss_pred Cccc
Q 023518 257 SSLE 260 (281)
Q Consensus 257 ~~l~ 260 (281)
++|+
T Consensus 81 ~~Le 84 (84)
T cd06489 81 SKLE 84 (84)
T ss_pred ccCC
Confidence 9986
No 5
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.86 E-value=4.1e-21 Score=164.40 Aligned_cols=119 Identities=31% Similarity=0.511 Sum_probs=115.9
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (281)
|+.++.+|+.+++.++|++|+..|++||.++|+|+.+|.+||.+|.++|.|+.|+.+++.||.++|...++|.|+|.+|+
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 82 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
.+|+|++|++.|+++++++|++..++..|..++..+++.
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~ 199 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEP 199 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999998887775
No 6
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=99.86 E-value=2e-21 Score=140.78 Aligned_cols=83 Identities=29% Similarity=0.444 Sum_probs=74.0
Q ss_pred cccccCCCeEEEEEEecC--CCCcceEEEEeeeEEEEEEEcCCCceeeeccccccccccCcceEEEeC--cEEEEEEeec
Q 023518 176 HEFYQKPEEVVVTVFAKG--IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLS--TKVEIRLAKA 251 (281)
Q Consensus 176 ~~w~Qt~~~V~i~v~~k~--~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~L~~~I~~~~s~~~v~~--~kiei~L~K~ 251 (281)
||||||+++|+|+||+|+ .+..++.++++.++|+++++.+ ++.|.++++||++|+|+. ++++.. +||||+|+|+
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~-~~~~~~~~~L~~~I~~~~-~~~~~~~~~KVEI~L~K~ 78 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILG-DKSYLLHLDLSNEVQWPC-EVRISTETGKIELVLKKK 78 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCCCEEEEEEECC-CceEEEeeeccccCCCCc-EEEEcccCceEEEEEEcC
Confidence 799999999999999885 5667778888999999999877 778999999999998775 888885 4999999999
Q ss_pred CCCCCCccc
Q 023518 252 EPIQWSSLE 260 (281)
Q Consensus 252 ~~~~W~~l~ 260 (281)
++..|++|+
T Consensus 79 e~~~W~~Lg 87 (87)
T cd06490 79 EPEKWTSLG 87 (87)
T ss_pred CCCccccCc
Confidence 999999985
No 7
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=99.85 E-value=4.5e-21 Score=138.40 Aligned_cols=84 Identities=49% Similarity=0.782 Sum_probs=79.2
Q ss_pred ccccCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcCCCceeeeccccccccccCcceEEEeCcEEEEEEeecCCCCC
Q 023518 177 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQW 256 (281)
Q Consensus 177 ~w~Qt~~~V~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~L~~~I~~~~s~~~v~~~kiei~L~K~~~~~W 256 (281)
|||||+++|+|+|+++|+.++++.|+|++++|+|.+...++..|.++++||++|+|++|+|++.+++|+|+|+|+++..|
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~K~~~~~W 80 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILPGGSEYQLELDLFGPIDPEQSKVSVLPTKVEITLKKAEPGSW 80 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEecCEEEEEEECCCCCeEEEecccccccCchhcEEEEeCeEEEEEEEcCCCCCC
Confidence 79999999999999999999999999999999999876545689999999999999999999999999999999998999
Q ss_pred Cccc
Q 023518 257 SSLE 260 (281)
Q Consensus 257 ~~l~ 260 (281)
++|+
T Consensus 81 ~~L~ 84 (84)
T cd06466 81 PSLE 84 (84)
T ss_pred ccCC
Confidence 9986
No 8
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=99.85 E-value=6.7e-21 Score=139.94 Aligned_cols=86 Identities=27% Similarity=0.466 Sum_probs=80.2
Q ss_pred CcccccCCCeEEEEEEecCCCC---cceEEEEeeeEEEEEEEcCCCceeeeccc-cccccccCcceEEEeCcEEEEEEee
Q 023518 175 RHEFYQKPEEVVVTVFAKGIPA---KNVTVDFGEQILSVSIDVPGEEAYHFQPR-LFGKIIPAKCRYEVLSTKVEIRLAK 250 (281)
Q Consensus 175 r~~w~Qt~~~V~i~v~~k~~~~---~~~~v~~~~~~l~~~~~~~~~~~~~~~~~-L~~~I~~~~s~~~v~~~kiei~L~K 250 (281)
+|+|+||++.|+|+|+++++.. +++.|+|++++|+|.+...+|.+|.+.+. ||++|+|++|+|++.+++|+|+|.|
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~~L~~~I~~e~s~~~~~~~ki~i~L~K 82 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLNGKNYRFTINRLLKKIDPEKSSFKVKTDRIVITLAK 82 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCCCcEEEEEehHhhCccCccccEEEEeCCEEEEEEEe
Confidence 7999999999999999999876 99999999999999987667888999885 9999999999999999999999999
Q ss_pred cCCCCCCccc
Q 023518 251 AEPIQWSSLE 260 (281)
Q Consensus 251 ~~~~~W~~l~ 260 (281)
+++..|++|.
T Consensus 83 ~~~~~W~~L~ 92 (92)
T cd06468 83 KKEKKWESLT 92 (92)
T ss_pred CCCCccCccC
Confidence 9989999984
No 9
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=99.84 E-value=1.5e-20 Score=142.07 Aligned_cols=92 Identities=23% Similarity=0.344 Sum_probs=83.7
Q ss_pred CcccccCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcC-CCceeeeccccccccccCcceEEEeCcEEEEEEeecC-
Q 023518 175 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP-GEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAE- 252 (281)
Q Consensus 175 r~~w~Qt~~~V~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~-~~~~~~~~~~L~~~I~~~~s~~~v~~~kiei~L~K~~- 252 (281)
-|+||||.+.|+|+|+++|+ +++.|+|++++|+|.+... ++..|.++++||++|+|++|+|++.+++|+|+|+|++
T Consensus 2 ~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~~~l~v~~~~~~~~~~y~~~~~L~~~I~pe~s~~~v~~~kveI~L~K~~~ 79 (108)
T cd06465 2 PVLWAQRSDVVYLTIELPDA--KDPKIKLEPTSLSFKAKGGGGGKKYEFDLEFYKEIDPEESKYKVTGRQIEFVLRKKEA 79 (108)
T ss_pred ceeeeECCCEEEEEEEeCCC--CCcEEEEECCEEEEEEEcCCCCeeEEEEeEhhhhccccccEEEecCCeEEEEEEECCC
Confidence 58999999999999999997 8899999999999998654 5677999999999999999999999999999999999
Q ss_pred CCCCCccccCcCcCCC
Q 023518 253 PIQWSSLEFSKGAVVP 268 (281)
Q Consensus 253 ~~~W~~l~~~~~~~~~ 268 (281)
+..|++|++...+.+-
T Consensus 80 ~~~W~~L~~~~~k~~~ 95 (108)
T cd06465 80 GEYWPRLTKEKGKLPW 95 (108)
T ss_pred CCCCcccccCCCCCCc
Confidence 7999999987766543
No 10
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=99.83 E-value=2.6e-20 Score=156.17 Aligned_cols=248 Identities=15% Similarity=0.189 Sum_probs=181.2
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----------cCHHHHHHHHHHHHHcCC------CcHHH
Q 023518 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKL----------QNFTEAVADANRAIELEP------SMSKA 72 (281)
Q Consensus 9 g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l----------~~~~~A~~~~~~al~l~p------~~~~a 72 (281)
+.+++..++.-.|+..|...+.-.|.|..++...+.|+.++ -....|++.++.|+-+.. ..+.+
T Consensus 2 ~~~L~D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a~~lEk~~~~Fs~~~s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~ 81 (368)
T COG5091 2 YKALYDEKEPLKALHLYDEILKGSPTNLTALIFKAACLEKLYFGFSDWHSDATMENAKELLDKALMTAEGRGDRSKIGLV 81 (368)
T ss_pred ccchhcccchHHHhhhhhhhhccCCcceeEEeehhhhHHHHHhhhhhhhcccChhhHHHHHHHHHHhhhccCCcceeeee
Confidence 34677788888999999999999999977767777776664 357789999999986653 34668
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhhhCcCCCCCCCCCCCcccc--CCCCCCCCCCCC
Q 023518 73 YWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLETGPTNVVS--TNNVQPATNISS 150 (281)
Q Consensus 73 ~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~--~~~~~~~~~~~~ 150 (281)
.+++|++||.+++|+-|..||.+|..+. .+..+..|..++...|..........+-...++...+ ........
T Consensus 82 ~~~~~v~~~~ik~Ye~a~~~F~~A~~~~-~~d~L~~We~rLet~L~~~~kkQ~~~Tnk~~I~~vEs~e~~GD~~~~---- 156 (368)
T COG5091 82 NFRYFVHFFNIKDYELAQSYFKKAKNLY-VDDTLPLWEDRLETKLNKKNKKQKDSTNKHTIKPVESIENRGDNNSS---- 156 (368)
T ss_pred hhhhHHHhhhHHHHHHHHHHHHHHHHHh-hcccchHHHHHHHHHHhHhhHhhccccCCCCCCchhhhhccCccccc----
Confidence 9999999999999999999999999994 4556888988888888776333222222111111011 01000000
Q ss_pred Cccchhhhccccccc---cCCCCCCCCCcccccCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcCCCce-eeecccc
Q 023518 151 TEDVETVMDVSNEAA---MAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEA-YHFQPRL 226 (281)
Q Consensus 151 ~~~~~~~~~~~~~~p---~~~p~~~k~r~~w~Qt~~~V~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~-~~~~~~L 226 (281)
+.+.+|..- +.-.+.-+++|+|.||..++.|.||.+-+..++|..-++.+.|+|++..+.+.. +.+.+.|
T Consensus 157 ------~S~~sP~~~~~~~qE~~~~~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~NTL~I~~q~~~~~~~~~~~~~L 230 (368)
T COG5091 157 ------HSPISPLKIETAPQESPKMEIAYDFSETSDTAIIFIYRPPVGDEQVSPVLEGNTLSISYQPRRLRLWNDITISL 230 (368)
T ss_pred ------cCCCCccccccCcccCccceeeeeccccceeEEEEEecCCCCccccceeecCCcceeeeeccccchHHHhhhhh
Confidence 111222211 112233457788888888888888888888899999999999999998875544 4566689
Q ss_pred ccccccCcceEEEeCcEEEEEEeecCCCCCCccccCcCcCC
Q 023518 227 FGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVV 267 (281)
Q Consensus 227 ~~~I~~~~s~~~v~~~kiei~L~K~~~~~W~~l~~~~~~~~ 267 (281)
|++|.|+.+++++.+.++|++|+|.+.++|+.|++......
T Consensus 231 y~ev~P~~~s~k~fsK~~e~~l~KV~~v~W~~l~~~pa~~S 271 (368)
T COG5091 231 YKEVYPDIRSIKSFSKRVEVHLRKVEMVRWGGLNGRPADES 271 (368)
T ss_pred hhhcCcchhhhhhcchhheehhhhhhhhhhcccccCccccc
Confidence 99999999999999999999999999999999998765533
No 11
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=99.82 E-value=1.3e-19 Score=135.50 Aligned_cols=90 Identities=18% Similarity=0.290 Sum_probs=82.0
Q ss_pred CcccccCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcCCCceeeeccccccccccCcceEEEeCcEEEEEEeecCC-
Q 023518 175 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP- 253 (281)
Q Consensus 175 r~~w~Qt~~~V~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~L~~~I~~~~s~~~v~~~kiei~L~K~~~- 253 (281)
.+.|||+.+.|+|+|++++ .++++|+|++++|+|+....+|..|.++++||++|+|++|++++++++|||+|+|++.
T Consensus 3 ~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~~~l~f~~~~~~g~~y~~~l~l~~~I~pe~Sk~~v~~r~ve~~L~K~~~~ 80 (106)
T cd00237 3 KTLWYDRRDYVFIEFCVED--SKDVKVDFEKSKLTFSCLNGDNVKIYNEIELYDRVDPNDSKHKRTDRSILCCLRKGKEG 80 (106)
T ss_pred cceeeECCCEEEEEEEeCC--CCCcEEEEecCEEEEEEECCCCcEEEEEEEeecccCcccCeEEeCCceEEEEEEeCCCC
Confidence 6899999999999999998 5899999999999999755577889999999999999999999999999999999975
Q ss_pred CCCCccccCcCcC
Q 023518 254 IQWSSLEFSKGAV 266 (281)
Q Consensus 254 ~~W~~l~~~~~~~ 266 (281)
..|++|+++..++
T Consensus 81 ~~WprL~k~~~k~ 93 (106)
T cd00237 81 VAWPRLTKEKAKP 93 (106)
T ss_pred CCCchhhcCCCCC
Confidence 6899999987654
No 12
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=99.77 E-value=1.9e-18 Score=124.88 Aligned_cols=81 Identities=16% Similarity=0.352 Sum_probs=72.3
Q ss_pred cccccCCCeEEEEEEe-cCCCCcceEEEEeeeEEEEEEEcCCCceeeeccccccccccCcceEEEeCc-EEEEEEeecCC
Q 023518 176 HEFYQKPEEVVVTVFA-KGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLST-KVEIRLAKAEP 253 (281)
Q Consensus 176 ~~w~Qt~~~V~i~v~~-k~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~L~~~I~~~~s~~~v~~~-kiei~L~K~~~ 253 (281)
|+|+||.+.|+|+|++ +|+++++++|+|++++|.|.+. +....++++||+.|+|++|+|++.++ +|||+|.|+++
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~---~~~~~~~g~L~~~I~~d~Stw~i~~~~~l~i~L~K~~~ 77 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALK---DQAPLLEGKLYSSIDHESSTWIIKENKSLEVSLIKKDE 77 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEecCEEEEEeC---CCCeEEeCcccCcccccCcEEEEeCCCEEEEEEEECCC
Confidence 8999999999999998 6999999999999999999874 22345788999999999999999766 69999999986
Q ss_pred -CCCCcc
Q 023518 254 -IQWSSL 259 (281)
Q Consensus 254 -~~W~~l 259 (281)
..|++|
T Consensus 78 ~~~W~~L 84 (85)
T cd06493 78 GPTWPEL 84 (85)
T ss_pred Ccccccc
Confidence 699987
No 13
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=99.77 E-value=2e-18 Score=122.79 Aligned_cols=77 Identities=38% Similarity=0.581 Sum_probs=70.4
Q ss_pred CCcccccCCCeEEEEEEecCCC--CcceEEEEeeeEEEEEEEcCCCceeeeccccccccccCcceEEEeCcEEEEEEee
Q 023518 174 YRHEFYQKPEEVVVTVFAKGIP--AKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAK 250 (281)
Q Consensus 174 ~r~~w~Qt~~~V~i~v~~k~~~--~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~L~~~I~~~~s~~~v~~~kiei~L~K 250 (281)
.||+|+||.+.|+|+|++++.. ++++.|+|++++|+|.+...++..|.++++||++|+|++|+|++.+++|+|+|+|
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~i~i~L~K 79 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDGKEYLLEGELFGEIDPDESTWKVKDNKIEITLKK 79 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTSCEEEEEEEBSS-BECCCEEEEEETTEEEEEEEB
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCCceEEEEEEEeeeEcchhcEEEEECCEEEEEEEC
Confidence 4899999999999999998765 8999999999999999987766899999999999999999999999999999998
No 14
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.76 E-value=4.2e-18 Score=121.10 Aligned_cols=78 Identities=26% Similarity=0.346 Sum_probs=73.3
Q ss_pred cccCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcCCCceeeeccccccccccCcceEEEeCcEEEEEEeecCCCCCC
Q 023518 178 FYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWS 257 (281)
Q Consensus 178 w~Qt~~~V~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~L~~~I~~~~s~~~v~~~kiei~L~K~~~~~W~ 257 (281)
|+|++++|+|+|.++|+.++++.|+++++.|+|.. ..|.++++||++|+|++|++++.+++|+|+|.|+++..|+
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~-----~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~~~~~W~ 75 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSDLYLKVNF-----PPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKKEPGIWE 75 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEecCEEEEcC-----CCEEEEEeCcccccccccEEEEeCCEEEEEEEeCCCCccc
Confidence 99999999999999999999999999999888765 3699999999999999999999999999999999889999
Q ss_pred ccc
Q 023518 258 SLE 260 (281)
Q Consensus 258 ~l~ 260 (281)
+|+
T Consensus 76 ~L~ 78 (78)
T cd06469 76 ALC 78 (78)
T ss_pred ccC
Confidence 986
No 15
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=99.75 E-value=8.2e-18 Score=121.61 Aligned_cols=81 Identities=25% Similarity=0.363 Sum_probs=74.3
Q ss_pred cccccCCCeEEEEEEe-cCCCCcceEEEEeeeEEEEEEEcCCCceeeeccccccccccCcceEEEeC-cEEEEEEeecCC
Q 023518 176 HEFYQKPEEVVVTVFA-KGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLS-TKVEIRLAKAEP 253 (281)
Q Consensus 176 ~~w~Qt~~~V~i~v~~-k~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~L~~~I~~~~s~~~v~~-~kiei~L~K~~~ 253 (281)
|.|+||.+.|+|+|.+ +++.+++++|+|++++|+|.+. |..+.+.+.||++|+|++|+|++.+ ++|+|+|.|+++
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~---~~~~~l~~~L~~~I~~~~s~w~~~~~~~v~i~L~K~~~ 77 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVK---GGEPLLDGELYAKVKVDESTWTLEDGKLLEITLEKRNE 77 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEEC---CCCceEcCcccCceeEcCCEEEEeCCCEEEEEEEECCC
Confidence 7899999999999976 5788999999999999999985 2467789999999999999999999 999999999998
Q ss_pred -CCCCcc
Q 023518 254 -IQWSSL 259 (281)
Q Consensus 254 -~~W~~l 259 (281)
..|++|
T Consensus 78 ~~~W~~L 84 (85)
T cd06467 78 GEWWPSL 84 (85)
T ss_pred Ccccccc
Confidence 799987
No 16
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.75 E-value=1.1e-17 Score=120.05 Aligned_cols=83 Identities=37% Similarity=0.636 Sum_probs=78.1
Q ss_pred cccCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcCCCceeeeccccccccccCcceEEEeCcEEEEEEeecCC-CCC
Q 023518 178 FYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP-IQW 256 (281)
Q Consensus 178 w~Qt~~~V~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~L~~~I~~~~s~~~v~~~kiei~L~K~~~-~~W 256 (281)
|+|++++|+|+|+++|+.++++.|+|++++|+|.+...++..|.++++|+++|+|++|+|++.+++|+|+|.|+++ ..|
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~~~~~W 80 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGGGKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKKEPGEWW 80 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEecCEEEEEeeCCCCCceEEeeEccCccchhhcEEEEeCCEEEEEEEECCCCCCC
Confidence 9999999999999999999999999999999999876556789999999999999999999999999999999998 999
Q ss_pred Cccc
Q 023518 257 SSLE 260 (281)
Q Consensus 257 ~~l~ 260 (281)
++|+
T Consensus 81 ~~l~ 84 (84)
T cd06463 81 PRLE 84 (84)
T ss_pred cccC
Confidence 9984
No 17
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=4.9e-17 Score=148.27 Aligned_cols=116 Identities=33% Similarity=0.537 Sum_probs=112.7
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (281)
++..+.+|+.+|..|+|..|+..|+++|+.+|+++.+|.+||.||.+++++..|+.|++.+++++|++.++|+|.|.+++
T Consensus 358 A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~ 437 (539)
T KOG0548|consen 358 AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALR 437 (539)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 023518 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (281)
Q Consensus 82 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l 117 (281)
.+.+|++|..+|+++++++|++..+..++.+|...+
T Consensus 438 ~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 438 AMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998876
No 18
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=99.73 E-value=2.1e-17 Score=120.58 Aligned_cols=81 Identities=26% Similarity=0.516 Sum_probs=73.9
Q ss_pred CcccccCCCeEEEEE-EecCCCCcceEEEEeeeEEEEEEEcCCCceeeeccccccccccCcceEEEeCcE-EEEEEeecC
Q 023518 175 RHEFYQKPEEVVVTV-FAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTK-VEIRLAKAE 252 (281)
Q Consensus 175 r~~w~Qt~~~V~i~v-~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~L~~~I~~~~s~~~v~~~k-iei~L~K~~ 252 (281)
+|.|+||.+.|+|+| +.+|++++++.|+|++++|+|.+. |.. .++++||+.|+|++|+|++.++| |+|+|.|.+
T Consensus 7 ~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~---g~~-~l~G~L~~~I~~destWtled~k~l~I~L~K~~ 82 (93)
T cd06494 7 WGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVK---GQE-VLKGKLFDSVVADECTWTLEDRKLIRIVLTKSN 82 (93)
T ss_pred CcEEEeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEEC---CEE-EEcCcccCccCcccCEEEEECCcEEEEEEEeCC
Confidence 899999999999999 678999999999999999999984 555 68899999999999999999998 699999986
Q ss_pred CC---CCCcc
Q 023518 253 PI---QWSSL 259 (281)
Q Consensus 253 ~~---~W~~l 259 (281)
.. .|++|
T Consensus 83 ~~~~~~W~sl 92 (93)
T cd06494 83 RDAGNCWKSL 92 (93)
T ss_pred CCCCcccccc
Confidence 54 99987
No 19
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.70 E-value=8.5e-16 Score=122.17 Aligned_cols=116 Identities=13% Similarity=0.152 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~ 83 (281)
.+...|..++..|+|++|+..|.+++..+|.+..++..+|.++..+|++++|+..|++++.++|+++.+++++|.++..+
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHh
Q 023518 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (281)
Q Consensus 84 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~ 119 (281)
|++++|+.+|++++++.|++...+..++.++..+..
T Consensus 106 g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~~ 141 (144)
T PRK15359 106 GEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDT 141 (144)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888888777654
No 20
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=99.69 E-value=9.1e-17 Score=133.09 Aligned_cols=92 Identities=33% Similarity=0.492 Sum_probs=84.7
Q ss_pred CCCCcccccCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcC-CCceeeeccccccccccCcceEEEeCcEEEEEEee
Q 023518 172 PKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP-GEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAK 250 (281)
Q Consensus 172 ~k~r~~w~Qt~~~V~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~-~~~~~~~~~~L~~~I~~~~s~~~v~~~kiei~L~K 250 (281)
.+.||||.||+..|+|+||.||.-++...|+.....|+|++..+ ++..|.++++|++.|++++|+..++.+||||+|+|
T Consensus 213 ~~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~~~l~V~ivf~~gna~fd~d~kLwgvvnve~s~v~m~~tkVEIsl~k 292 (320)
T KOG1667|consen 213 VKCRHDWHQTNGFVTINVYAKGALPETSNIEANGTTLHVSIVFGFGNASFDLDYKLWGVVNVEESSVVMGETKVEISLKK 292 (320)
T ss_pred ccchhhhhhcCCeEEEEEEeccCCcccceeeeCCeEEEEEEEecCCCceeeccceeeeeechhhceEEeecceEEEEEec
Confidence 36899999999999999999998889999999999999998775 55578899999999999999999999999999999
Q ss_pred cCCCCCCccccCc
Q 023518 251 AEPIQWSSLEFSK 263 (281)
Q Consensus 251 ~~~~~W~~l~~~~ 263 (281)
+++..|.+|+...
T Consensus 293 ~ep~sWa~Le~p~ 305 (320)
T KOG1667|consen 293 AEPGSWARLEFPP 305 (320)
T ss_pred cCCCCcccccCCH
Confidence 9999999999873
No 21
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=99.63 E-value=1.3e-15 Score=120.12 Aligned_cols=104 Identities=22% Similarity=0.248 Sum_probs=94.4
Q ss_pred cccccCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcCCCceeeecc-ccccccccCcceEEEeCcEEEEEEeecCCC
Q 023518 176 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQP-RLFGKIIPAKCRYEVLSTKVEIRLAKAEPI 254 (281)
Q Consensus 176 ~~w~Qt~~~V~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~-~L~~~I~~~~s~~~v~~~kiei~L~K~~~~ 254 (281)
|.|.|++.+|.+.|.+.||+.++|+|+|.+.+|.+.+....|.+|.+.+ .|.++|.|+.|+.+|..+.|.|.++|.+..
T Consensus 77 ygWDQs~kfVK~yItL~GV~eenVqv~ftp~Sldl~v~dlqGK~y~~~vnnLlk~I~vEks~~kvKtd~v~I~~kkVe~~ 156 (224)
T KOG3260|consen 77 YGWDQSNKFVKMYITLEGVDEENVQVEFTPMSLDLKVHDLQGKNYRMIVNNLLKPISVEKSSKKVKTDTVLILCKKVENT 156 (224)
T ss_pred cCccccCCeeEEEEEeecccccceeEEecccceeeeeeecCCcceeeehhhhccccChhhcccccccceEEEeehhhhcc
Confidence 9999999999999999999999999999999999999988999999999 699999999999999999999999999999
Q ss_pred CCCccc------cCcCcCCCCcCCCCCcccc
Q 023518 255 QWSSLE------FSKGAVVPQRVNPPSGMLI 279 (281)
Q Consensus 255 ~W~~l~------~~~~~~~~~~~~~~~~~~~ 279 (281)
.|+-|. +++.++.-..-.+|..|||
T Consensus 157 rwd~Lt~~~Ke~Kek~kpsl~ke~DP~~glm 187 (224)
T KOG3260|consen 157 RWDYLTQVEKECKEKEKPSLDKETDPSEGLM 187 (224)
T ss_pred cchHHHHHHHHHhhccCccccccCChHHHHH
Confidence 999996 3345555555677888887
No 22
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=7.1e-15 Score=130.94 Aligned_cols=119 Identities=24% Similarity=0.406 Sum_probs=110.0
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---------------AELFADRAQASIKLQNFTEAVADANRAIELE 66 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~---------------~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 66 (281)
|......|+.+|+.|+|..|...|.+++..-... ..++.|+|.||+++++|.+|+..++++|.++
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 4567889999999999999999999998873321 3579999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 67 PSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 67 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
|+|.+++||+|.+|..+|+|+.|+..|+++++++|+|..+...+.+|..+.+..
T Consensus 288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 288 PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY 341 (397)
T ss_pred CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888877
No 23
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.3e-15 Score=137.49 Aligned_cols=114 Identities=30% Similarity=0.496 Sum_probs=111.7
Q ss_pred ChhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 023518 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (281)
Q Consensus 1 ma~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~ 80 (281)
|+..+..+|+++|..|||+.|+.+|+.+|.++|.|..+|.+|+.||..+|+|++|+.+..++++++|+.+++|.++|.++
T Consensus 1 ~a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~ 80 (539)
T KOG0548|consen 1 KAVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAAL 80 (539)
T ss_pred ChhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHH
Q 023518 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECE 114 (281)
Q Consensus 81 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 114 (281)
+.+|+|++|+..|.++++.+|+|..+...+..+.
T Consensus 81 ~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 81 FGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 9999999999999999999999999999998887
No 24
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.62 E-value=1.9e-14 Score=113.93 Aligned_cols=118 Identities=16% Similarity=0.124 Sum_probs=108.1
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 023518 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (281)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (281)
+.++..|..++..|+|++|...|+-+..++|.++.+|+++|.|+..+|+|.+|+..|.+|+.++|+++.++++.|.|++.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 83 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
+|+.+.|+.+|+.++.....++.......+++..|...
T Consensus 116 lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~~l 153 (157)
T PRK15363 116 CDNVCYAIKALKAVVRICGEVSEHQILRQRAEKMLQQL 153 (157)
T ss_pred cCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHh
Confidence 99999999999999999876666666666666655543
No 25
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=99.61 E-value=5e-15 Score=107.05 Aligned_cols=81 Identities=22% Similarity=0.306 Sum_probs=72.3
Q ss_pred cccccCCCeEEEEEEec-C--CCCcceEEEEeeeEEEEEEEcCCCceeeeccccccccccCcceEEEeCc-EEEEEEeec
Q 023518 176 HEFYQKPEEVVVTVFAK-G--IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLST-KVEIRLAKA 251 (281)
Q Consensus 176 ~~w~Qt~~~V~i~v~~k-~--~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~L~~~I~~~~s~~~v~~~-kiei~L~K~ 251 (281)
|.|.||.++|+|+|.++ + +++.+++|+|+.++|+|.++ |..+.++++||++|++++|+|.+.++ .|+|+|.|.
T Consensus 1 Y~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~---g~~~~i~G~L~~~V~~des~Wtled~~~l~i~L~K~ 77 (87)
T cd06492 1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLK---GQPPIIDGELYNEVKVEESSWLIEDGKVVTVNLEKI 77 (87)
T ss_pred CccEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEEC---CCceEEeCcccCcccccccEEEEeCCCEEEEEEEEC
Confidence 78999999999999763 3 77899999999999999985 55677999999999999999999885 699999999
Q ss_pred CC-CCCCcc
Q 023518 252 EP-IQWSSL 259 (281)
Q Consensus 252 ~~-~~W~~l 259 (281)
+. ..|++|
T Consensus 78 ~~~~wW~~l 86 (87)
T cd06492 78 NKMEWWSRL 86 (87)
T ss_pred CCCcccccc
Confidence 76 799987
No 26
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=99.59 E-value=8e-15 Score=108.59 Aligned_cols=87 Identities=21% Similarity=0.275 Sum_probs=75.2
Q ss_pred CcccccCCCeEEEEEEec-C-CCCcceEEEEeeeEEEEEEEcCCCceeeeccccccccccCcceEEEeCcE-EEEEEeec
Q 023518 175 RHEFYQKPEEVVVTVFAK-G-IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTK-VEIRLAKA 251 (281)
Q Consensus 175 r~~w~Qt~~~V~i~v~~k-~-~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~L~~~I~~~~s~~~v~~~k-iei~L~K~ 251 (281)
+|.|.||.++|+|+|.++ | ++.+++.|+|+.++|.|.+...++....++.+||+.|++++|+|++.+++ |+|+|.|.
T Consensus 6 ~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~~~~~i~G~L~~~V~~des~Wtled~~~l~I~L~K~ 85 (102)
T cd06495 6 NYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGGEKVLMEGEFTHKINTENSLWSLEPGKCVLLSLSKC 85 (102)
T ss_pred ceEEEeECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCCCCceEEeCcccCcccCccceEEEeCCCEEEEEEEEC
Confidence 799999999999999764 5 35799999999999999997543433468999999999999999999865 89999999
Q ss_pred CCCCCCcccc
Q 023518 252 EPIQWSSLEF 261 (281)
Q Consensus 252 ~~~~W~~l~~ 261 (281)
....|++|-.
T Consensus 86 ~~~wW~~v~~ 95 (102)
T cd06495 86 SEVWWNAVLK 95 (102)
T ss_pred CCcccchhhC
Confidence 7788999864
No 27
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.59 E-value=6.6e-14 Score=109.40 Aligned_cols=116 Identities=18% Similarity=0.301 Sum_probs=109.6
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 023518 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (281)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (281)
..++..|..++..|+|++|++.|.+++..+|.+..++..+|.++..+|++.+|+..+++++.++|.+...++.+|.++..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHH
Q 023518 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (281)
Q Consensus 83 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~ 118 (281)
.|++++|...|+++++++|++..+..+..++...+.
T Consensus 98 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 133 (135)
T TIGR02552 98 LGEPESALKALDLAIEICGENPEYSELKERAEAMLE 133 (135)
T ss_pred cCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHh
Confidence 999999999999999999999998888887776553
No 28
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.55 E-value=1.2e-13 Score=112.40 Aligned_cols=119 Identities=34% Similarity=0.479 Sum_probs=108.8
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS-----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK 76 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~-----~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~ 76 (281)
++.+...|+.+|..|+|.+|..-|..||..-|.- ..+|.+||.|+++++.++.|+.++.+||+++|.+-+++.|+
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR 174 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR 174 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence 4567889999999999999999999999998875 46899999999999999999999999999999999999999
Q ss_pred HHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 77 ATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 77 g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
|.+|.++..|++|+..|.+.++.+|...++...+.++...+...
T Consensus 175 Aeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~er 218 (271)
T KOG4234|consen 175 AEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINER 218 (271)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHH
Confidence 99999999999999999999999999988877777766555544
No 29
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.54 E-value=3.8e-14 Score=123.53 Aligned_cols=118 Identities=25% Similarity=0.340 Sum_probs=110.2
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 023518 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (281)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (281)
.++..+|+.||++|.|++||.+|.+++..+|.|+.++.+||.+|+++++|..|..+|+.|+.++....++|-|+|.+-+.
T Consensus 98 SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 98 SEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES 177 (536)
T ss_pred HHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 83 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
+|...+|...++.++++.|++.++...++.+...+...
T Consensus 178 Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~ 215 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERK 215 (536)
T ss_pred HhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhh
Confidence 99999999999999999999988887777776644443
No 30
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.50 E-value=6.2e-13 Score=118.11 Aligned_cols=109 Identities=21% Similarity=0.156 Sum_probs=102.7
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (281)
+..++.+|..+...|++++|+..|+++++.+|+++.+|..+|.++..+|++++|+..|+++++++|++..+++++|.+++
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhhcCCCChhHHHHH
Q 023518 82 KLEEYETAKVALEKGASLAPGDSRFTNLI 110 (281)
Q Consensus 82 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 110 (281)
..|++++|+..|+++++++|++.....|.
T Consensus 144 ~~g~~~eA~~~~~~al~~~P~~~~~~~~~ 172 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQDDPNDPYRALWL 172 (296)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999999999999997433443
No 31
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.48 E-value=9.9e-14 Score=125.85 Aligned_cols=123 Identities=46% Similarity=0.669 Sum_probs=118.3
Q ss_pred ChhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 023518 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (281)
Q Consensus 1 ma~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~ 80 (281)
||..+..+|+.++..++|+.|+..|.+||+++|+.+.++.+|+.++++.++|..|+.|+.+|++++|...++|+++|.++
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV 82 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence 57888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhhhCc
Q 023518 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGE 123 (281)
Q Consensus 81 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~~~~ 123 (281)
..+++|.+|...|+....+.|+++.+.+.+..|+.......-+
T Consensus 83 m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe 125 (476)
T KOG0376|consen 83 MALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFE 125 (476)
T ss_pred HhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999988886433
No 32
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.47 E-value=2.1e-12 Score=108.00 Aligned_cols=112 Identities=17% Similarity=0.168 Sum_probs=100.6
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHccC--HHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQAS-IKLQN--FTEAVADANRAIELEPSMSKAYWRKAT 78 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~-~~l~~--~~~A~~~~~~al~l~p~~~~a~~~~g~ 78 (281)
++.++..|..+...|+|++|+..|.+++.++|+++.++..+|.++ ...|+ +.+|...++++++++|++..+++.+|.
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~ 152 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLAS 152 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 457888999999999999999999999999999999999999985 67777 599999999999999999999999999
Q ss_pred HHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHH
Q 023518 79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (281)
Q Consensus 79 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 113 (281)
+++.+|+|++|+.+|+++++++|.+..-...+..+
T Consensus 153 ~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~~i 187 (198)
T PRK10370 153 DAFMQADYAQAIELWQKVLDLNSPRVNRTQLVESI 187 (198)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence 99999999999999999999998776554444433
No 33
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=8e-13 Score=117.67 Aligned_cols=116 Identities=28% Similarity=0.512 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA 79 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~----~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~ 79 (281)
.+...|+.+|+.|+|..|.+.|+.+|.++|++ +.+|.+||.+..++|+..+|+.+++.|+.+++...+++.++|.|
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 56778999999999999999999999999987 67899999999999999999999999999999999999999999
Q ss_pred HHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 80 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
+..+++|++|++.|+++.+...+ ....+.+..++..|++.
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkS 370 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKS 370 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHh
Confidence 99999999999999999999876 77788888888888765
No 34
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=2.4e-12 Score=116.74 Aligned_cols=117 Identities=24% Similarity=0.409 Sum_probs=98.7
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (281)
|..+..+||.+|+.|+|++||++|+.||.+.|+.+.+|.+|+.||..+|+|++.++++.+|++++|+..++++||+.++.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhhc-CCCChhHHHHHHHHHHHHH
Q 023518 82 KLEEYETAKVALEKGASL-APGDSRFTNLIKECEERIA 118 (281)
Q Consensus 82 ~~g~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~l~ 118 (281)
.+|++.+|+....-.--+ +=.+......+.+...++.
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a 232 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQA 232 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHH
Confidence 999999999876543222 2233444444444433333
No 35
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.41 E-value=7e-12 Score=95.13 Aligned_cols=107 Identities=15% Similarity=0.109 Sum_probs=98.8
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc---HHHHHH
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWR 75 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~---~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~---~~a~~~ 75 (281)
++.++..|..++..|+|++|+..|.+++..+|++ ..+++.+|.++...|++++|+..++.++..+|++ ..+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4678999999999999999999999999998876 5789999999999999999999999999998874 678999
Q ss_pred HHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHH
Q 023518 76 KATACMKLEEYETAKVALEKGASLAPGDSRFTN 108 (281)
Q Consensus 76 ~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 108 (281)
+|.++..+|++++|..++++++...|++.....
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 999999999999999999999999999876543
No 36
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.37 E-value=1.2e-11 Score=120.55 Aligned_cols=112 Identities=15% Similarity=0.162 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhh
Q 023518 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (281)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g 84 (281)
++..|..++..|+|++|+..|.++++.+|+++.+++.+|.++..+|++++|+.+|++++.++|++..+++.+|.+++.+|
T Consensus 368 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g 447 (615)
T TIGR00990 368 YIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEG 447 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCC
Confidence 34444444444444444444444444444444444555555555555555555555555555544444444555555555
Q ss_pred cHHHHHHHHHHhhhcCCCChhHHHHHHHHHHH
Q 023518 85 EYETAKVALEKGASLAPGDSRFTNLIKECEER 116 (281)
Q Consensus 85 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 116 (281)
++++|+..|+++++..|.+..+...++.+...
T Consensus 448 ~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~ 479 (615)
T TIGR00990 448 SIASSMATFRRCKKNFPEAPDVYNYYGELLLD 479 (615)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 55555555555555444444444444444433
No 37
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.37 E-value=1.1e-11 Score=120.81 Aligned_cols=118 Identities=17% Similarity=0.193 Sum_probs=109.3
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 023518 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (281)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (281)
..+...|..++..|++++|+..|.+++..+|++...|+.+|.++..+|++++|+.++++++.++|++..+++.+|.+++.
T Consensus 332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~ 411 (615)
T TIGR00990 332 IALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI 411 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 83 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
+|+|++|+.+|++++.++|++......++.+...+++.
T Consensus 412 ~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~ 449 (615)
T TIGR00990 412 KGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSI 449 (615)
T ss_pred cCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCH
Confidence 99999999999999999999988877777776655543
No 38
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=1.4e-12 Score=102.92 Aligned_cols=91 Identities=24% Similarity=0.300 Sum_probs=80.5
Q ss_pred CcccccCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEc-CCCceeeeccccccccccCcceEEEeCcEEEEEEeecCC
Q 023518 175 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDV-PGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP 253 (281)
Q Consensus 175 r~~w~Qt~~~V~i~v~~k~~~~~~~~v~~~~~~l~~~~~~-~~~~~~~~~~~L~~~I~~~~s~~~v~~~kiei~L~K~~~ 253 (281)
-..|+|..+.|+++|.+. ...+++|.+++..|.|+..+ .++..|.++|+||++|+|++|++++.++.|.++|+|++.
T Consensus 9 ~v~Waqr~~~vyltv~Ve--d~~d~~v~~e~~~l~fs~k~~~d~~~~~~~ief~~eIdpe~sk~k~~~r~if~i~~K~e~ 86 (180)
T KOG3158|consen 9 EVKWAQRRDLVYLTVCVE--DAKDVHVNLEPSKLTFSCKSGADNHKYENEIEFFDEIDPEKSKHKRTSRSIFCILRKKEL 86 (180)
T ss_pred cchhhhhcCeEEEEEEec--cCccceeeccccEEEEEeccCCCceeeEEeeehhhhcCHhhccccccceEEEEEEEcccc
Confidence 467999999999999988 46789999999999999766 577778888999999999999999999999999999987
Q ss_pred -CCCCccccCcCcCC
Q 023518 254 -IQWSSLEFSKGAVV 267 (281)
Q Consensus 254 -~~W~~l~~~~~~~~ 267 (281)
..|++|++.+.+..
T Consensus 87 ~~~WprLtkeK~K~h 101 (180)
T KOG3158|consen 87 GEYWPRLTKEKAKLH 101 (180)
T ss_pred ccccchhhhcccccc
Confidence 99999998776543
No 39
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.36 E-value=2.5e-11 Score=86.27 Aligned_cols=99 Identities=32% Similarity=0.493 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~ 83 (281)
.++..|..++..|++++|+..+.++++..|.+..++..+|.++...+++++|+..+++++.+.|.+..+++.+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHhhhcCCC
Q 023518 84 EEYETAKVALEKGASLAPG 102 (281)
Q Consensus 84 g~~~~A~~~~~~a~~~~p~ 102 (281)
|++++|...+.++++.+|.
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999988763
No 40
>PRK15331 chaperone protein SicA; Provisional
Probab=99.36 E-value=2.1e-11 Score=97.14 Aligned_cols=116 Identities=11% Similarity=0.024 Sum_probs=103.4
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 023518 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (281)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (281)
+.++..|..+|..|+|++|...|+-+...++.++++++.+|.|+..+++|++|+..|..|..++++++...|..|.||+.
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~ 117 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHh
Q 023518 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (281)
Q Consensus 83 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~ 119 (281)
+|+.+.|+.+|+.++. .|.+..+..+-......++.
T Consensus 118 l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~~ 153 (165)
T PRK15331 118 MRKAAKARQCFELVNE-RTEDESLRAKALVYLEALKT 153 (165)
T ss_pred hCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHHc
Confidence 9999999999999999 46666555554444444444
No 41
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=99.33 E-value=2.4e-12 Score=101.82 Aligned_cols=85 Identities=18% Similarity=0.208 Sum_probs=72.6
Q ss_pred CCcccccCCCeEEEEEE-ecCC-CCcceEEEEeeeEEEEEEEcCCCceeeeccccccccccCcceEEEeCcEEEEEEeec
Q 023518 174 YRHEFYQKPEEVVVTVF-AKGI-PAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKA 251 (281)
Q Consensus 174 ~r~~w~Qt~~~V~i~v~-~k~~-~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~L~~~I~~~~s~~~v~~~kiei~L~K~ 251 (281)
-.|.|+||-+.|.|.|. .+|+ +..++.|.|.+++|+|.++ |++..++++|+++|++++|.|+|.++|+.+++-|+
T Consensus 19 ~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~hI~V~~k---g~~~ildG~L~~~vk~des~WtiEd~k~i~i~l~K 95 (179)
T KOG2265|consen 19 EKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSKHIKVGLK---GQPPILDGELSHSVKVDESTWTIEDGKMIVILLKK 95 (179)
T ss_pred cceeeeeehhheEEEeecCCCCcccceEEEEeeeeEEEEecC---CCCceecCccccccccccceEEecCCEEEEEEeec
Confidence 46999999999999984 5776 8899999999999999986 66678999999999999999999999755555554
Q ss_pred CC--CCCCcccc
Q 023518 252 EP--IQWSSLEF 261 (281)
Q Consensus 252 ~~--~~W~~l~~ 261 (281)
.. ..|.+|-.
T Consensus 96 ~~~~eWW~~ll~ 107 (179)
T KOG2265|consen 96 SNKMEWWDSLLE 107 (179)
T ss_pred cchHHHHHHHHc
Confidence 43 89999853
No 42
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=6.6e-12 Score=104.69 Aligned_cols=99 Identities=29% Similarity=0.485 Sum_probs=95.6
Q ss_pred ChhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 023518 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (281)
Q Consensus 1 ma~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~ 80 (281)
|++.+..+|+.||..+.|..|+..|.++|..+|..+.+|.+||.||+++++++.+..++.+|++++|+..+++|.+|.++
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~ 88 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL 88 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcHHHHHHHHHHhhhc
Q 023518 81 MKLEEYETAKVALEKGASL 99 (281)
Q Consensus 81 ~~~g~~~~A~~~~~~a~~~ 99 (281)
.....|.+|+..++++..+
T Consensus 89 l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 89 LQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HhhccccHHHHHHHHHHHH
Confidence 9999999999999999665
No 43
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.32 E-value=5e-12 Score=117.56 Aligned_cols=114 Identities=20% Similarity=0.183 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 023518 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (281)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (281)
+++++.|+.+-..+.|+.|+..|.+|+...|+++.++.++|.+|+.+|..+.|+..|++|+.++|.+..++.++|.++-.
T Consensus 253 dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd 332 (966)
T KOG4626|consen 253 DAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKD 332 (966)
T ss_pred HHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHh
Confidence 45556666665555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHH
Q 023518 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEER 116 (281)
Q Consensus 83 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 116 (281)
.|+..+|..+|.+++.+.|++++....++.++..
T Consensus 333 ~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E 366 (966)
T KOG4626|consen 333 KGSVTEAVDCYNKALRLCPNHADAMNNLGNIYRE 366 (966)
T ss_pred ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 5555555555555555555555544444444433
No 44
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.31 E-value=1.3e-11 Score=85.13 Aligned_cols=67 Identities=34% Similarity=0.516 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhh-cHHHHHHHHHHhhhcCC
Q 023518 35 SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE-EYETAKVALEKGASLAP 101 (281)
Q Consensus 35 ~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g-~~~~A~~~~~~a~~~~p 101 (281)
++..|..+|.+++..|+|++|+..|.+++.++|+++.+++++|.+|+.+| ++.+|+.+|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34555556666666666666666666666666666666666666666665 46666666666655554
No 45
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.30 E-value=1.1e-11 Score=85.46 Aligned_cols=66 Identities=30% Similarity=0.502 Sum_probs=64.0
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHcCC
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ-NFTEAVADANRAIELEP 67 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~-~~~~A~~~~~~al~l~p 67 (281)
|..+...|..++..|+|++|+..|+++++.+|+++.+++++|.||..+| ++.+|+.+++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 6788999999999999999999999999999999999999999999999 79999999999999987
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.29 E-value=6.1e-12 Score=117.70 Aligned_cols=119 Identities=18% Similarity=0.276 Sum_probs=113.8
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (281)
.+.|...|+++--+++++.|+++|.+|+.++|+.+-+|..+|.-+.....|+.|+.+|+.||..+|.+..|||.+|.+|.
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~ 500 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL 500 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee
Confidence 35788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 82 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
++++++.|.-.|++|++++|.+..+...++..+.++++.
T Consensus 501 Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~ 539 (638)
T KOG1126|consen 501 KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRK 539 (638)
T ss_pred ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhh
Confidence 999999999999999999999999999999998888876
No 47
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.27 E-value=5.1e-11 Score=110.95 Aligned_cols=116 Identities=15% Similarity=0.147 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~ 83 (281)
++.+.|+++-..|+..+|..+|+++|.+.|+.++++.++|.+|..+|++++|...|.++++..|..+.++-++|.+|.++
T Consensus 322 Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqq 401 (966)
T KOG4626|consen 322 AYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQ 401 (966)
T ss_pred HHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhc
Confidence 44555666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred hcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHh
Q 023518 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (281)
Q Consensus 84 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~ 119 (281)
|++++|+.+|+.++++.|.-.+....++...+.+++
T Consensus 402 gnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 402 GNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred ccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhh
Confidence 666666666666666666555555555444444444
No 48
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.27 E-value=8.7e-11 Score=97.74 Aligned_cols=119 Identities=16% Similarity=0.034 Sum_probs=105.0
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (281)
+...+..|..|+..||+..|...+++||+.+|++..+|..||..|.++|+.+.|.+.|++|+.++|++++++-+.|.-++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhhc--CCCChhHHHHHHHHHHHHHhh
Q 023518 82 KLEEYETAKVALEKGASL--APGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 82 ~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~l~~~ 120 (281)
.+|+|++|...|++|+.. .+........+..|..+.++.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~ 155 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQF 155 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCc
Confidence 999999999999998873 455556667777776654443
No 49
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.27 E-value=1.4e-10 Score=94.85 Aligned_cols=110 Identities=19% Similarity=0.217 Sum_probs=96.7
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~---~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~ 78 (281)
+..++..|..++..|+|++|+.+|.+++...++. ..++..+|.++.++|++++|+..+.+++.+.|.+..++..+|.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 4567889999999999999999999999887653 5789999999999999999999999999999999999999999
Q ss_pred HHHHhhc--------------HHHHHHHHHHhhhcCCCCh-hHHHHHH
Q 023518 79 ACMKLEE--------------YETAKVALEKGASLAPGDS-RFTNLIK 111 (281)
Q Consensus 79 ~~~~~g~--------------~~~A~~~~~~a~~~~p~~~-~~~~~l~ 111 (281)
++..+|+ +.+|..++++++.++|++- .+..|+.
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~ 162 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWLK 162 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHH
Confidence 9999887 6888899999999998874 3344444
No 50
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=4.5e-11 Score=104.04 Aligned_cols=100 Identities=27% Similarity=0.442 Sum_probs=91.5
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~----~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g 77 (281)
|+.+...||.||+.++|..|+..|+++|+..-.+ +.+|.+||.|.+.+|+|..|+.|+.+|+.++|.+.++++|-+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 6788999999999999999999999999986554 678999999999999999999999999999999999999999
Q ss_pred HHHHHhhcHHHHHHHHHHhhhcCC
Q 023518 78 TACMKLEEYETAKVALEKGASLAP 101 (281)
Q Consensus 78 ~~~~~~g~~~~A~~~~~~a~~~~p 101 (281)
.|++.+++++.|..+++..+..+-
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhH
Confidence 999999998888888777766543
No 51
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=6e-11 Score=107.19 Aligned_cols=112 Identities=20% Similarity=0.277 Sum_probs=73.7
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHH
Q 023518 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET 88 (281)
Q Consensus 9 g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~ 88 (281)
||=|-..++.++|+.+|++|++++|....+|..+|.-|+.+++...|+..|++|+.++|.+..+||.+|++|.-++-..=
T Consensus 337 aNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~Y 416 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFY 416 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHH
Confidence 34444555666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 89 AKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 89 A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
|+-+|++|..+-|+|+..|..++.|+.++++.
T Consensus 417 aLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~ 448 (559)
T KOG1155|consen 417 ALYYFQKALELKPNDSRLWVALGECYEKLNRL 448 (559)
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHhccH
Confidence 66666666666666666666666666666554
No 52
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.26 E-value=9.5e-11 Score=114.45 Aligned_cols=119 Identities=12% Similarity=-0.013 Sum_probs=93.0
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (281)
++.++..|......|.|++|+.++..++.+.|++..++.+++.++.+++++++|+..+++++..+|+++.+++.+|.++.
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~ 165 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWD 165 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 35667778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 82 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
++|+|++|..+|++++..+|++..++.+++.+...+++.
T Consensus 166 ~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~ 204 (694)
T PRK15179 166 EIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGAL 204 (694)
T ss_pred HhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Confidence 888888888888888887777777666666665544443
No 53
>PRK12370 invasion protein regulator; Provisional
Probab=99.26 E-value=1e-10 Score=112.60 Aligned_cols=112 Identities=16% Similarity=0.040 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhh
Q 023518 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (281)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g 84 (281)
+...|..+...|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..++++++++|.+..+++.++.+++..|
T Consensus 341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g 420 (553)
T PRK12370 341 LGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHT 420 (553)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcc
Confidence 33445555555555555555555555555555555555555555555555555555555555555444444444455555
Q ss_pred cHHHHHHHHHHhhhcC-CCChhHHHHHHHHHHH
Q 023518 85 EYETAKVALEKGASLA-PGDSRFTNLIKECEER 116 (281)
Q Consensus 85 ~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 116 (281)
++++|+.++++++... |+++.....++.+...
T Consensus 421 ~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~ 453 (553)
T PRK12370 421 GIDDAIRLGDELRSQHLQDNPILLSMQVMFLSL 453 (553)
T ss_pred CHHHHHHHHHHHHHhccccCHHHHHHHHHHHHh
Confidence 5555555555555443 4444444444444433
No 54
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.25 E-value=2e-11 Score=87.70 Aligned_cols=81 Identities=27% Similarity=0.426 Sum_probs=73.3
Q ss_pred hcCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHH
Q 023518 15 DDYFELAYDLYSQAIEISPN--SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVA 92 (281)
Q Consensus 15 ~~~y~~Al~~y~~al~~~p~--~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~ 92 (281)
.|+|+.|+..|++++..+|. +..+++.+|.||+++|+|.+|+..+++ +..++.+...++.+|.|++.+|+|++|+.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 68999999999999999995 466788899999999999999999999 888888889999999999999999999999
Q ss_pred HHHh
Q 023518 93 LEKG 96 (281)
Q Consensus 93 ~~~a 96 (281)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9875
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.25 E-value=2.7e-10 Score=95.36 Aligned_cols=117 Identities=19% Similarity=0.156 Sum_probs=91.3
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (281)
+..+...|..++..|+|++|+..|.++++.+|++..++..+|.++..+|++++|+..+++++.++|.+..+++.+|.+++
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 34567788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HhhcHHHHHHHHHHhhhcC--CCChhHHHHHHHHHHHHH
Q 023518 82 KLEEYETAKVALEKGASLA--PGDSRFTNLIKECEERIA 118 (281)
Q Consensus 82 ~~g~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~~l~ 118 (281)
..|++++|...|++++... +........++.+....+
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 149 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAG 149 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcC
Confidence 8888888888888887753 233334444444444333
No 56
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.24 E-value=2.7e-11 Score=85.14 Aligned_cols=73 Identities=26% Similarity=0.374 Sum_probs=67.6
Q ss_pred cccCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcC-------CCceeeeccccccccccCcceEEEeCcEEEEEEee
Q 023518 178 FYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP-------GEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAK 250 (281)
Q Consensus 178 w~Qt~~~V~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~-------~~~~~~~~~~L~~~I~~~~s~~~v~~~kiei~L~K 250 (281)
|+|+++.|+|.|.++|+.++++.|++.++.|.|++... .+..|.+.+.|+++|++++|++++.+++|+|.|.|
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l~K 80 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLENGVLEITLPK 80 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEECCEEEEEEcC
Confidence 99999999999999999999999999999999997654 24579999999999999999999999999999987
No 57
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.24 E-value=8.1e-11 Score=93.49 Aligned_cols=96 Identities=21% Similarity=0.209 Sum_probs=90.3
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCC
Q 023518 22 YDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP 101 (281)
Q Consensus 22 l~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p 101 (281)
..+|++++..+|++ +..+|.++...|++++|+..|++++.++|.+..+++.+|.++..+|++++|+.+|++++.++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46899999999875 667999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHhh
Q 023518 102 GDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 102 ~~~~~~~~l~~~~~~l~~~ 120 (281)
++..++..++.|...+++.
T Consensus 90 ~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred CCcHHHHHHHHHHHHcCCH
Confidence 9999999999998887776
No 58
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=7.2e-11 Score=107.28 Aligned_cols=118 Identities=23% Similarity=0.264 Sum_probs=90.2
Q ss_pred ChhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 023518 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (281)
Q Consensus 1 ma~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~ 80 (281)
||+.+...|..+|..|++..|...|+++|.++|.+..+|+.||.+|...++-++-..+|+.|..++|.++..||.||+.+
T Consensus 325 ~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~ 404 (606)
T KOG0547|consen 325 MAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMR 404 (606)
T ss_pred HHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHH
Confidence 56777778888888888888888888888888887777888888888888888888888888888888888888888888
Q ss_pred HHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHH
Q 023518 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (281)
Q Consensus 81 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~ 118 (281)
+-+++|++|+..|+++++++|++.-....+.-+..++.
T Consensus 405 flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~ 442 (606)
T KOG0547|consen 405 FLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQH 442 (606)
T ss_pred HHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHH
Confidence 88888888888888888888877654444444443333
No 59
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.24 E-value=1.8e-10 Score=116.54 Aligned_cols=110 Identities=15% Similarity=0.040 Sum_probs=99.0
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 023518 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (281)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (281)
..+...|..+.+.|++++|+..|.+++..+|+++.++.++|.++..+|++++|+..++++++++|+++.+++.+|.++..
T Consensus 610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~ 689 (987)
T PRK09782 610 NAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR 689 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhhcCCCChhHHHHHHH
Q 023518 83 LEEYETAKVALEKGASLAPGDSRFTNLIKE 112 (281)
Q Consensus 83 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 112 (281)
+|++++|..+|++++.++|++..+....+.
T Consensus 690 lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~ 719 (987)
T PRK09782 690 LDDMAATQHYARLVIDDIDNQALITPLTPE 719 (987)
T ss_pred CCCHHHHHHHHHHHHhcCCCCchhhhhhhH
Confidence 999999999999999999988766544333
No 60
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=2.2e-10 Score=103.53 Aligned_cols=117 Identities=17% Similarity=0.145 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~ 83 (281)
.|--.|..++.+++-..|++.|++|++.+|.+..+|+.+|++|.-++-..-|+-.|++|+.+.|.+...|..+|.||.++
T Consensus 366 aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl 445 (559)
T KOG1155|consen 366 AWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKL 445 (559)
T ss_pred HHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh
Confidence 45567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 84 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
++.++|+.||.+++.....+..+...+++++++++..
T Consensus 446 ~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~ 482 (559)
T KOG1155|consen 446 NRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDL 482 (559)
T ss_pred ccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhH
Confidence 9999999999999999988888999999999998887
No 61
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.23 E-value=1.6e-10 Score=96.72 Aligned_cols=106 Identities=14% Similarity=0.135 Sum_probs=98.6
Q ss_pred hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH-HHhhc--HHHHHH
Q 023518 15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC-MKLEE--YETAKV 91 (281)
Q Consensus 15 ~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~-~~~g~--~~~A~~ 91 (281)
.++.++++..|.+++..+|++...|..+|.+|..+|++++|+..|+++++++|++..+++.+|.++ +..|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 567799999999999999999999999999999999999999999999999999999999999985 67787 599999
Q ss_pred HHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 92 ALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 92 ~~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
.++++++++|++..+...++.+...+++.
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~ 160 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADY 160 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCH
Confidence 99999999999999999988887776665
No 62
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.23 E-value=3.8e-11 Score=110.94 Aligned_cols=115 Identities=18% Similarity=0.253 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~ 83 (281)
.....|..|+..|+|++|+.+|+.||...|+|..+|.++|..+..-.+..+|+..|++|+++.|.+..++|++|++|..+
T Consensus 432 vQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNl 511 (579)
T KOG1125|consen 432 VQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNL 511 (579)
T ss_pred HHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhh
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHhhhcCCCC----------hhHHHHHHHHHHHHH
Q 023518 84 EEYETAKVALEKGASLAPGD----------SRFTNLIKECEERIA 118 (281)
Q Consensus 84 g~~~~A~~~~~~a~~~~p~~----------~~~~~~l~~~~~~l~ 118 (281)
|.|.+|..+|-.|+.+.+.. ..+|..|+.+-..++
T Consensus 512 G~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~ 556 (579)
T KOG1125|consen 512 GAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMN 556 (579)
T ss_pred hhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcC
Confidence 99999999999999986651 236666665544333
No 63
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.23 E-value=3.9e-10 Score=96.43 Aligned_cols=108 Identities=24% Similarity=0.243 Sum_probs=98.6
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHH---HHHH
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA---ELFADRAQASIKLQNFTEAVADANRAIELEPSMSK---AYWR 75 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~---~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~---a~~~ 75 (281)
++.++..|..++..|+|++|+..|.+++..+|+++ .+++.+|.+|..+|++++|+..++++++..|++.. +++.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 46789999999999999999999999999999876 57899999999999999999999999999998765 7999
Q ss_pred HHHHHHHh--------hcHHHHHHHHHHhhhcCCCChhHHHH
Q 023518 76 KATACMKL--------EEYETAKVALEKGASLAPGDSRFTNL 109 (281)
Q Consensus 76 ~g~~~~~~--------g~~~~A~~~~~~a~~~~p~~~~~~~~ 109 (281)
+|.+++.. |++++|+..|+++++.+|++......
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a 154 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDA 154 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHH
Confidence 99999987 89999999999999999998765433
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.23 E-value=2.1e-10 Score=110.49 Aligned_cols=95 Identities=12% Similarity=0.010 Sum_probs=89.7
Q ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 023518 16 DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEK 95 (281)
Q Consensus 16 ~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~ 95 (281)
+++++|+..+.++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++..+|++++|+.+|++
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCChhHHHHH
Q 023518 96 GASLAPGDSRFTNLI 110 (281)
Q Consensus 96 a~~~~p~~~~~~~~l 110 (281)
+++++|.+.....++
T Consensus 398 Al~l~P~~~~~~~~~ 412 (553)
T PRK12370 398 CLKLDPTRAAAGITK 412 (553)
T ss_pred HHhcCCCChhhHHHH
Confidence 999999987654443
No 65
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.21 E-value=9.5e-11 Score=109.83 Aligned_cols=118 Identities=19% Similarity=0.272 Sum_probs=112.0
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 023518 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (281)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (281)
.+|+..|..|++.++|+.|...|.+|+.++|.+.....-.|..+.++|+.++|+..+++|+.++|.++...|.+|.+++.
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~ 569 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFS 569 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Confidence 36888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 83 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
+++|++|+..+++..++.|++..+...++++..++++.
T Consensus 570 ~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~ 607 (638)
T KOG1126|consen 570 LGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNT 607 (638)
T ss_pred hcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999998886
No 66
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.21 E-value=1e-10 Score=102.40 Aligned_cols=103 Identities=21% Similarity=0.278 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 023518 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (281)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (281)
+..+..|+.++..++|.+|+..|-.|++.+|++..++++||.+|+.+|+-..|+.++.++|++.|+...+...+|.+++.
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhhcCCCChh
Q 023518 83 LEEYETAKVALEKGASLAPGDSR 105 (281)
Q Consensus 83 ~g~~~~A~~~~~~a~~~~p~~~~ 105 (281)
+|++++|...|.+.+..+|++..
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~ 141 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGL 141 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcch
Confidence 99999999999999999996543
No 67
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.19 E-value=7.3e-10 Score=92.71 Aligned_cols=118 Identities=14% Similarity=0.142 Sum_probs=98.6
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHH
Q 023518 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE--PSMSKAYWRKATAC 80 (281)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~--p~~~~a~~~~g~~~ 80 (281)
..+...|..++..|++++|+..|.+++...|.+..++.++|.++...|++++|+..+.+++... +.....++.+|.++
T Consensus 66 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (234)
T TIGR02521 66 LAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCA 145 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 3456788889999999999999999999999998899999999999999999999999998754 45567888889999
Q ss_pred HHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 81 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
+..|++++|...|.+++..+|.+......+..+....++.
T Consensus 146 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 146 LKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCH
Confidence 9999999999999999999888877777776666555443
No 68
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.18 E-value=3.4e-10 Score=88.27 Aligned_cols=98 Identities=22% Similarity=0.239 Sum_probs=93.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCC
Q 023518 23 DLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPG 102 (281)
Q Consensus 23 ~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~ 102 (281)
+.|.+++..+|++...++.+|.+++..|++++|+..+++++.++|.+..+++.+|.+++.+|++++|..+|++++..+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHhh
Q 023518 103 DSRFTNLIKECEERIAEE 120 (281)
Q Consensus 103 ~~~~~~~l~~~~~~l~~~ 120 (281)
+......++.+....++.
T Consensus 84 ~~~~~~~la~~~~~~g~~ 101 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEP 101 (135)
T ss_pred ChHHHHHHHHHHHHcCCH
Confidence 999999999988877665
No 69
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.18 E-value=9.2e-10 Score=95.83 Aligned_cols=109 Identities=12% Similarity=0.007 Sum_probs=97.5
Q ss_pred hHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC---cHHHHHH
Q 023518 3 TDLEKKAKEA-FIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWR 75 (281)
Q Consensus 3 ~~l~~~g~~~-~~~~~y~~Al~~y~~al~~~p~~---~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~---~~~a~~~ 75 (281)
...+..|..+ +..|+|++|+..|...+..+|++ +.+++.+|.+|+..|+|++|+..|.+++...|+ ...+++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 4567788877 56799999999999999999998 589999999999999999999999999998886 5889999
Q ss_pred HHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHH
Q 023518 76 KATACMKLEEYETAKVALEKGASLAPGDSRFTNLIK 111 (281)
Q Consensus 76 ~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 111 (281)
+|.++..+|++++|...|+++++..|+......-..
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~ 258 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQK 258 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 999999999999999999999999999886544433
No 70
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.15 E-value=8.5e-10 Score=93.44 Aligned_cols=115 Identities=18% Similarity=0.145 Sum_probs=108.8
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhc
Q 023518 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE 85 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~ 85 (281)
..+|..++..|+|..|+..+.++....|++..+|..+|.+|.++|++++|...|.+++++.|..+.+.-++|..|+-.|+
T Consensus 104 ~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 104 AAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 86 YETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 86 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
++.|...+..+....+.+..+...+..+....++.
T Consensus 184 ~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 184 LEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCCh
Confidence 99999999999999999999988888887666665
No 71
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.1e-09 Score=91.89 Aligned_cols=117 Identities=24% Similarity=0.334 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCCC----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNS----------AELFADRAQASIKLQNFTEAVADANRAIEL 65 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~--------~p~~----------~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 65 (281)
.+.++||.+|+.|+|.+|...|..|+-. .|.+ ..++.|+++|++..|+|-++++.+...+..
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 5678999999999999999999999764 4544 346899999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhH-HHHHHHHHHHHHhh
Q 023518 66 EPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF-TNLIKECEERIAEE 120 (281)
Q Consensus 66 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~-~~~l~~~~~~l~~~ 120 (281)
.|.+.+++|++|.++...-+.++|.+.|.++++++|.-..+ .+.+..+..++...
T Consensus 260 ~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek 315 (329)
T KOG0545|consen 260 HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEK 315 (329)
T ss_pred CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999987654 56666666665554
No 72
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.15 E-value=7.8e-10 Score=111.96 Aligned_cols=111 Identities=23% Similarity=0.296 Sum_probs=103.1
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHH
Q 023518 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET 88 (281)
Q Consensus 9 g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~ 88 (281)
+..+...|++++|+..|.+++..+|+ +.++.++|.++.++|++++|+..+++++.++|+++.++..+|.++...|++++
T Consensus 583 a~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 583 HAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 33444559999999999999999996 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 89 AKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 89 A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
|+..|+++++++|++..+...++.+...+++.
T Consensus 662 Ai~~l~~AL~l~P~~~~a~~nLA~al~~lGd~ 693 (987)
T PRK09782 662 SREMLERAHKGLPDDPALIRQLAYVNQRLDDM 693 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 99999999999999999999998888876665
No 73
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.14 E-value=2.2e-10 Score=78.03 Aligned_cols=62 Identities=23% Similarity=0.350 Sum_probs=30.1
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc
Q 023518 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM 69 (281)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 69 (281)
+|..++..|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|++++.++|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 44445555555555555555555555555555555555555555555555555555544443
No 74
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.13 E-value=2.6e-10 Score=77.59 Aligned_cols=65 Identities=20% Similarity=0.326 Sum_probs=60.8
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCCh
Q 023518 40 ADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104 (281)
Q Consensus 40 ~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~ 104 (281)
+.+|..++..|+|++|+..|+++++.+|++..+++.+|.+++.+|++++|...|+++++++|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999875
No 75
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.13 E-value=3e-10 Score=99.91 Aligned_cols=117 Identities=21% Similarity=0.193 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~ 83 (281)
-+...|..+.+.|++++|+..|.++++.+|++..+...++.+++..|+++++...+.......|.++..+..+|.+|+.+
T Consensus 148 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~l 227 (280)
T PF13429_consen 148 FWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQL 227 (280)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccc
Confidence 46678999999999999999999999999999999999999999999999988888888888888888889999999999
Q ss_pred hcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 84 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
|++++|+.+|++++..+|+|+.+...++.+....++.
T Consensus 228 g~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~ 264 (280)
T PF13429_consen 228 GRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRK 264 (280)
T ss_dssp T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----
T ss_pred ccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999988888777765
No 76
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.13 E-value=1.5e-09 Score=88.23 Aligned_cols=110 Identities=19% Similarity=0.218 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~---~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~ 78 (281)
+..+...|..+...|+|++|+..|.+++...++. +.++.++|.++..+|++++|+..+++++.++|.....+..+|.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 4467888999999999999999999999887663 4589999999999999999999999999999999999999999
Q ss_pred HHH-------HhhcHH-------HHHHHHHHhhhcCCCCh-hHHHHHH
Q 023518 79 ACM-------KLEEYE-------TAKVALEKGASLAPGDS-RFTNLIK 111 (281)
Q Consensus 79 ~~~-------~~g~~~-------~A~~~~~~a~~~~p~~~-~~~~~l~ 111 (281)
++. .+|+++ +|..+|++++..+|.+. ....|+.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~ 162 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLK 162 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 998 667766 55666667777787554 2334443
No 77
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.11 E-value=2.6e-09 Score=83.37 Aligned_cols=106 Identities=23% Similarity=0.233 Sum_probs=95.9
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc---HHHHHH
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWR 75 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~---~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~---~~a~~~ 75 (281)
+..++..|..+++.|+|.+|++.|..+....|.. ..+.+.++.+|++.++|++|+..+++.++++|.+ .-++|.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 4678999999999999999999999999987765 5789999999999999999999999999999876 558999
Q ss_pred HHHHHHHhhc---------------HHHHHHHHHHhhhcCCCChhHH
Q 023518 76 KATACMKLEE---------------YETAKVALEKGASLAPGDSRFT 107 (281)
Q Consensus 76 ~g~~~~~~g~---------------~~~A~~~~~~a~~~~p~~~~~~ 107 (281)
+|.+++.+.. ...|...|++.++..|++.-+.
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~ 136 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAA 136 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 9999999987 8899999999999999887543
No 78
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.11 E-value=1.9e-09 Score=98.29 Aligned_cols=117 Identities=15% Similarity=0.182 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~ 83 (281)
..+..+...|..+.+++|+..++..+...|+|+.++..++.++++.++..+|.+.+++++.++|+....++.+|.+|+..
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~ 387 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhc
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 84 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
|++.+|+..++..+..+|+++..|..+++.+..++..
T Consensus 388 g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 388 GKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNR 424 (484)
T ss_pred CChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCch
Confidence 9999999999999999999999999999999988876
No 79
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.10 E-value=1.4e-09 Score=106.69 Aligned_cols=115 Identities=11% Similarity=0.085 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhcCHHH----HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 023518 5 LEKKAKEAFIDDYFEL----AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (281)
Q Consensus 5 l~~~g~~~~~~~~y~~----Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~ 80 (281)
+...|..++..|++++ |+..|++++..+|+++.++..+|.++..+|++++|+..+++++.++|++..+++.+|.++
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l 328 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3445566666666654 566666666666666666666666666666666666666666666666666666666666
Q ss_pred HHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHh
Q 023518 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (281)
Q Consensus 81 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~ 119 (281)
..+|++++|+..|++++..+|.+..+...++.+...+++
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~ 367 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGK 367 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCC
Confidence 666666666666666666666555443334444444433
No 80
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.10 E-value=2.3e-09 Score=103.57 Aligned_cols=118 Identities=14% Similarity=0.122 Sum_probs=109.6
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 023518 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (281)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (281)
..++.+|+.+|..|++++|.+++.++++++|.++.+|+.+|.+|..+|+.++++..+-.|-.++|.+..-|.+++....+
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 83 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
+|.+..|+.||.+|++.+|.+-.+......+..+++..
T Consensus 220 ~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~ 257 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDL 257 (895)
T ss_pred cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChH
Confidence 99999999999999999999987766666666655554
No 81
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.10 E-value=1.6e-09 Score=106.34 Aligned_cols=100 Identities=17% Similarity=0.055 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~ 83 (281)
.+...|..++..|++++|+..|++++..+|+++.++..+|.+|..+|++++|+..|++++..+|.+...++.+|.++..+
T Consensus 286 a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~ 365 (656)
T PRK15174 286 IVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQA 365 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHC
Confidence 34445555555566666666666666656665555555666666666666666666666655555555555555555556
Q ss_pred hcHHHHHHHHHHhhhcCCCC
Q 023518 84 EEYETAKVALEKGASLAPGD 103 (281)
Q Consensus 84 g~~~~A~~~~~~a~~~~p~~ 103 (281)
|++++|+..|+++++.+|++
T Consensus 366 G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 366 GKTSEAESVFEHYIQARASH 385 (656)
T ss_pred CCHHHHHHHHHHHHHhChhh
Confidence 66666666666665555554
No 82
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=4.9e-09 Score=90.83 Aligned_cols=114 Identities=20% Similarity=0.164 Sum_probs=103.2
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ---NFTEAVADANRAIELEPSMSKAYWRKAT 78 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~---~~~~A~~~~~~al~l~p~~~~a~~~~g~ 78 (281)
++.|...|..|+..+++..|...|.+|+++.|+|++.+..+|.+++... .-.++...+++++.++|.+..+.+.+|.
T Consensus 156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~ 235 (287)
T COG4235 156 AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAF 235 (287)
T ss_pred chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 4678889999999999999999999999999999999999999999874 4788999999999999999999999999
Q ss_pred HHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHH
Q 023518 79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEE 115 (281)
Q Consensus 79 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 115 (281)
.++..|+|.+|...++..++..|.+..-...+.+.-.
T Consensus 236 ~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia 272 (287)
T COG4235 236 AAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIA 272 (287)
T ss_pred HHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 9999999999999999999999988765555555433
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.09 E-value=1.8e-09 Score=89.99 Aligned_cols=117 Identities=15% Similarity=0.103 Sum_probs=102.8
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHH
Q 023518 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL--EPSMSKAYWRKATAC 80 (281)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l--~p~~~~a~~~~g~~~ 80 (281)
..+..+|..|...|+.+.|-+.|++|+.++|++.+++.|.|..+..+|+|++|...|++|+.. -+..+..+-++|.|-
T Consensus 70 ~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Ca 149 (250)
T COG3063 70 LAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCA 149 (250)
T ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHH
Confidence 345667888899999999999999999999999999999999999999999999999999964 356688999999999
Q ss_pred HHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHh
Q 023518 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (281)
Q Consensus 81 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~ 119 (281)
++.|+++.|..+|+++++++|+.+.....+.+.+..-++
T Consensus 150 l~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~ 188 (250)
T COG3063 150 LKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGD 188 (250)
T ss_pred hhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhccc
Confidence 999999999999999999999998766666655544333
No 84
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=99.08 E-value=2.7e-09 Score=81.40 Aligned_cols=99 Identities=27% Similarity=0.330 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc----HHHHHHHHHH
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM----SKAYWRKATA 79 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~----~~a~~~~g~~ 79 (281)
.+-.+|.++-..|+.+.|++.|.++|.+-|..+.+|.+||+++...|+.++|+.++++|+++..+. ..++..+|..
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l 124 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL 124 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 456689999999999999999999999999999999999999999999999999999999997654 4588899999
Q ss_pred HHHhhcHHHHHHHHHHhhhcCCC
Q 023518 80 CMKLEEYETAKVALEKGASLAPG 102 (281)
Q Consensus 80 ~~~~g~~~~A~~~~~~a~~~~p~ 102 (281)
|..+|+.+.|+..|+.+.++...
T Consensus 125 yRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 125 YRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHhCchHHHHHhHHHHHHhCCH
Confidence 99999999999999999888653
No 85
>PLN02789 farnesyltranstransferase
Probab=99.06 E-value=4.3e-09 Score=94.24 Aligned_cols=114 Identities=13% Similarity=0.007 Sum_probs=96.9
Q ss_pred hHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH--HHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 023518 3 TDLEKKAKEAFIDD-YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNF--TEAVADANRAIELEPSMSKAYWRKATA 79 (281)
Q Consensus 3 ~~l~~~g~~~~~~~-~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~--~~A~~~~~~al~l~p~~~~a~~~~g~~ 79 (281)
..+..+|..+...+ ++++|+..+++++..+|++..+|..|+.++.++++. .+++..++++++++|.+..+|..+|.+
T Consensus 72 taW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~ 151 (320)
T PLN02789 72 TVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWV 151 (320)
T ss_pred HHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 35667788888777 678999999999999999988999999888888874 678888889999999999999999999
Q ss_pred HHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHH
Q 023518 80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER 116 (281)
Q Consensus 80 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 116 (281)
+..+|+|++|+.++.++++.+|.|..++..+..+...
T Consensus 152 l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~ 188 (320)
T PLN02789 152 LRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITR 188 (320)
T ss_pred HHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHh
Confidence 9999999999999999999999998887777766443
No 86
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.04 E-value=4e-09 Score=90.16 Aligned_cols=118 Identities=15% Similarity=0.077 Sum_probs=101.8
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHc--------cCHHHHHHHHHHHHHcCCCcHH
Q 023518 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAE---LFADRAQASIKL--------QNFTEAVADANRAIELEPSMSK 71 (281)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~---~~~~~a~~~~~l--------~~~~~A~~~~~~al~l~p~~~~ 71 (281)
..++..|..++..|+|++|+..|.++++.+|+++. +++.+|.++... |++++|+..+++++..+|++..
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 150 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEY 150 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChh
Confidence 35688999999999999999999999999998865 689999999987 8899999999999999998754
Q ss_pred HH-----------------HHHHHHHHHhhcHHHHHHHHHHhhhcCCCCh---hHHHHHHHHHHHHHhh
Q 023518 72 AY-----------------WRKATACMKLEEYETAKVALEKGASLAPGDS---RFTNLIKECEERIAEE 120 (281)
Q Consensus 72 a~-----------------~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~~l~~~~~~l~~~ 120 (281)
++ +.+|..|+..|++.+|+..|++++...|+++ .++..++.+...+++.
T Consensus 151 ~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~ 219 (235)
T TIGR03302 151 APDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLK 219 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCH
Confidence 32 4678899999999999999999999988764 5667777777766664
No 87
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.04 E-value=5.9e-09 Score=102.00 Aligned_cols=116 Identities=13% Similarity=0.030 Sum_probs=103.2
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 023518 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (281)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (281)
......|..+.+.+.+++|+..+++++..+|+++.+++.+|.++..+|+|++|+..|++++..+|++..++..+|.++..
T Consensus 121 ~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~ 200 (694)
T PRK15179 121 EAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTR 200 (694)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhhcCCC-ChhHHHHHHHHHHHHH
Q 023518 83 LEEYETAKVALEKGASLAPG-DSRFTNLIKECEERIA 118 (281)
Q Consensus 83 ~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~l~ 118 (281)
+|+.++|..+|++++..... ...+...+.++...+.
T Consensus 201 ~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 237 (694)
T PRK15179 201 RGALWRARDVLQAGLDAIGDGARKLTRRLVDLNADLA 237 (694)
T ss_pred cCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHH
Confidence 99999999999999987543 3444555555544433
No 88
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.02 E-value=1.8e-08 Score=84.57 Aligned_cols=119 Identities=27% Similarity=0.250 Sum_probs=97.7
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc---HHHHHH
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWR 75 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~---~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~---~~a~~~ 75 (281)
++.++..|..++..|+|.+|+..|++++...|.+ ..+.+.+|.++++.|+|.+|+..+++.++..|+. ..++|.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 4688999999999999999999999999998876 6889999999999999999999999999999875 569999
Q ss_pred HHHHHHHhhc-----------HHHHHHHHHHhhhcCCCChhH---HHHHHHHHHHHHhh
Q 023518 76 KATACMKLEE-----------YETAKVALEKGASLAPGDSRF---TNLIKECEERIAEE 120 (281)
Q Consensus 76 ~g~~~~~~g~-----------~~~A~~~~~~a~~~~p~~~~~---~~~l~~~~~~l~~~ 120 (281)
+|.+++.+.+ ..+|...|+..++..|+..-. ...+..+...+...
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~ 143 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEH 143 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHH
Confidence 9999887643 458999999999999998754 45666666666654
No 89
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.02 E-value=3.9e-09 Score=93.78 Aligned_cols=106 Identities=17% Similarity=0.038 Sum_probs=94.0
Q ss_pred hcCHHHHHHHHHHHHhcCC---C-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHH
Q 023518 15 DDYFELAYDLYSQAIEISP---N-SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAK 90 (281)
Q Consensus 15 ~~~y~~Al~~y~~al~~~p---~-~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~ 90 (281)
.+..+.++..++++|...+ . .+.+|+.+|.+|..+|++.+|+.+|+++++++|+++.+|+.+|.++..+|++++|.
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4566889999999997433 3 37889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 91 VALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 91 ~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
.+|+++++++|++..++..++.+....++.
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 148 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRY 148 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 999999999999998888877776554443
No 90
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.01 E-value=6.4e-09 Score=103.82 Aligned_cols=112 Identities=11% Similarity=0.100 Sum_probs=105.5
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 023518 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (281)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (281)
..+...|..+...|++++|+.+|++++..+|.++.++..+|.++...|++++|+..+++++..+|++.. ++.+|.++..
T Consensus 50 ~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~ 128 (765)
T PRK10049 50 RGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKR 128 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH
Confidence 357888999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred hhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHH
Q 023518 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEE 115 (281)
Q Consensus 83 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 115 (281)
.|++++|+..|+++++++|++..+...+..+..
T Consensus 129 ~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~ 161 (765)
T PRK10049 129 AGRHWDELRAMTQALPRAPQTQQYPTEYVQALR 161 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999999999999988777766654
No 91
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.01 E-value=6.6e-09 Score=103.65 Aligned_cols=116 Identities=22% Similarity=0.182 Sum_probs=103.8
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 023518 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (281)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (281)
..+...|..++..|+|++|+..|.+++..+|++..+++.+|.++...|++++|+..+++++..+|.+..+++.+|.+++.
T Consensus 126 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (899)
T TIGR02917 126 ELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLS 205 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHH
Q 023518 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (281)
Q Consensus 83 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~ 118 (281)
.|++++|..+|++++..+|.+......+..+....+
T Consensus 206 ~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g 241 (899)
T TIGR02917 206 LGNIELALAAYRKAIALRPNNPAVLLALATILIEAG 241 (899)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999998877766666654433
No 92
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.00 E-value=1.3e-08 Score=87.13 Aligned_cols=110 Identities=15% Similarity=0.131 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc---HHHHHHH
Q 023518 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWRK 76 (281)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~---~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~---~~a~~~~ 76 (281)
+.+++.|..++..|+|..|...|..-++..|++ +.+++-+|.+++.+|+|.+|...|..+++..|+. +++++.+
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 457899999999999999999999999999987 6889999999999999999999999999988765 6789999
Q ss_pred HHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHH
Q 023518 77 ATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE 112 (281)
Q Consensus 77 g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 112 (281)
|.+...+|+-++|...|+++.+..|+.+....-...
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~ 257 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVA 257 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 999999999999999999999999998876544433
No 93
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.96 E-value=1.3e-08 Score=106.04 Aligned_cols=110 Identities=16% Similarity=0.221 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHH--------------HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAE--------------LFADRAQASIKLQNFTEAVADANRAIELEPSM 69 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~--------------~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 69 (281)
.+...|..++..|++++|+.+|+++++.+|++.. .+..+|.++.+.|++++|+..|++++.++|.+
T Consensus 305 a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~ 384 (1157)
T PRK11447 305 ALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTD 384 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4555666666677777777777777666665431 12344666666677777777777777777777
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHH
Q 023518 70 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (281)
Q Consensus 70 ~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 113 (281)
..+++.+|.++..+|++++|+.+|+++++++|++......+..+
T Consensus 385 ~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l 428 (1157)
T PRK11447 385 SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANL 428 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 78889999999999999999999999999999988766555444
No 94
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.95 E-value=3.9e-08 Score=84.87 Aligned_cols=119 Identities=18% Similarity=0.131 Sum_probs=100.4
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHHcCCCc---HHHHHH
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAEL---FADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWR 75 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~---~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~---~~a~~~ 75 (281)
++.++..|..++..|+|++|+..|++++...|....+ .+.+|.+|+++++|.+|+..+++.+++.|++ ..++|.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 3567899999999999999999999999999998654 4899999999999999999999999999875 668999
Q ss_pred HHHHHHHhh------------------cHHHHHHHHHHhhhcCCCChh---HHHHHHHHHHHHHhh
Q 023518 76 KATACMKLE------------------EYETAKVALEKGASLAPGDSR---FTNLIKECEERIAEE 120 (281)
Q Consensus 76 ~g~~~~~~g------------------~~~~A~~~~~~a~~~~p~~~~---~~~~l~~~~~~l~~~ 120 (281)
+|.+++.++ .-.+|+..|+..++..|+..- +...+..++.+|.+.
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~ 177 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKY 177 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHH
Confidence 999876654 135788999999999998763 456667777766665
No 95
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.95 E-value=3.3e-09 Score=72.64 Aligned_cols=67 Identities=19% Similarity=0.203 Sum_probs=47.5
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 023518 12 AFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (281)
Q Consensus 12 ~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~ 78 (281)
++..|+|++|+..|.+++..+|++..+++.+|.||++.|++++|...+++++..+|++...+..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 3566777777777777777777777777777777777777777777777777777776666555543
No 96
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.95 E-value=1.4e-08 Score=101.19 Aligned_cols=114 Identities=16% Similarity=0.186 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhh
Q 023518 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (281)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g 84 (281)
+...|..+...|++++|+..|.++++.+|+++..+.++|.++...|+ .+|+..+++++.+.|++...+..+|.+++.+|
T Consensus 773 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 851 (899)
T TIGR02917 773 RTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKG 851 (899)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 34455666666666666666666666666666666666666666666 56666666666666666666666677777777
Q ss_pred cHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHh
Q 023518 85 EYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (281)
Q Consensus 85 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~ 119 (281)
++++|..+|+++++.+|.+..+...+..+....++
T Consensus 852 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 886 (899)
T TIGR02917 852 EADRALPLLRKAVNIAPEAAAIRYHLALALLATGR 886 (899)
T ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Confidence 77777777777777777666666666655544433
No 97
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.95 E-value=1e-08 Score=81.39 Aligned_cols=93 Identities=11% Similarity=0.097 Sum_probs=87.2
Q ss_pred HHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhH
Q 023518 28 AIEIS-PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF 106 (281)
Q Consensus 28 al~~~-p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 106 (281)
+.+.. ++.-+..+.+|.-++..|++++|...|+.+..++|.+...|+.+|.++..+|+|++|+.+|.++..++|+++..
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 34456 67788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 023518 107 TNLIKECEERIAEE 120 (281)
Q Consensus 107 ~~~l~~~~~~l~~~ 120 (281)
....+.|.-.+++.
T Consensus 106 ~~~ag~c~L~lG~~ 119 (157)
T PRK15363 106 PWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHHHHHcCCH
Confidence 99999999888876
No 98
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.93 E-value=5.1e-09 Score=72.78 Aligned_cols=62 Identities=27% Similarity=0.480 Sum_probs=30.4
Q ss_pred HHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhH
Q 023518 45 ASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF 106 (281)
Q Consensus 45 ~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 106 (281)
+|+..++|++|+..+++++.++|++...++.+|.+++.+|+|.+|..+|+++++..|++...
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 34444445555555555555555444444445555555555555555555555444444443
No 99
>PLN02789 farnesyltranstransferase
Probab=98.92 E-value=2.6e-08 Score=89.25 Aligned_cols=109 Identities=16% Similarity=0.058 Sum_probs=99.2
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcH--HH
Q 023518 12 AFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ-NFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY--ET 88 (281)
Q Consensus 12 ~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~-~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~--~~ 88 (281)
+...+.+++|+..++++|..+|++..+|..|+.++..++ ++++++..+++++..+|++..+|..++.++..+|++ ++
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence 445778999999999999999999999999999999998 689999999999999999999999999999999874 78
Q ss_pred HHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 89 AKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 89 A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
++.++.++++.+|.+-.++...+.+...++..
T Consensus 127 el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~ 158 (320)
T PLN02789 127 ELEFTRKILSLDAKNYHAWSHRQWVLRTLGGW 158 (320)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhhhH
Confidence 89999999999999999988888777766543
No 100
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.92 E-value=2.8e-08 Score=99.32 Aligned_cols=109 Identities=17% Similarity=0.073 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~ 83 (281)
.+...|..+...|++++|+..+++++...|.+..+++.+|.++...|++++|+..+++++.++|++..+++.+|.++..+
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~ 440 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDL 440 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHhhhcCCCChhHHHHHHH
Q 023518 84 EEYETAKVALEKGASLAPGDSRFTNLIKE 112 (281)
Q Consensus 84 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 112 (281)
|+|++|...++++++..|+++.+...-..
T Consensus 441 ~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~ 469 (765)
T PRK10049 441 QEWRQMDVLTDDVVAREPQDPGVQRLARA 469 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999999999976554433
No 101
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.91 E-value=1e-08 Score=71.25 Aligned_cols=70 Identities=29% Similarity=0.469 Sum_probs=64.9
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 023518 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (281)
Q Consensus 9 g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~ 78 (281)
...++..++|+.|++.+++++..+|+++.++..+|.|+..+|+|.+|+.++++++..+|++..+...++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 4678999999999999999999999999999999999999999999999999999999998877665543
No 102
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.91 E-value=2.6e-08 Score=91.29 Aligned_cols=115 Identities=14% Similarity=0.185 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc-----HHHHHHHHHH
Q 023518 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM-----SKAYWRKATA 79 (281)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~-----~~a~~~~g~~ 79 (281)
+...|..++..|+|++|+..|.++++.+|.+..++..++.++...|++++|+..+++++..+|.+ ...+..+|.+
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 189 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ 189 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 44556777777777777777777777666666666677777777777777777777766666543 2234556666
Q ss_pred HHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHh
Q 023518 80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (281)
Q Consensus 80 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~ 119 (281)
+...|++++|...|+++++.+|++......++.+....++
T Consensus 190 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 229 (389)
T PRK11788 190 ALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGD 229 (389)
T ss_pred HHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCC
Confidence 6667777777777777776666665555555555444443
No 103
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.91 E-value=3.3e-08 Score=90.61 Aligned_cols=98 Identities=15% Similarity=0.192 Sum_probs=59.4
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhc
Q 023518 7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM-SKAYWRKATACMKLEE 85 (281)
Q Consensus 7 ~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~-~~a~~~~g~~~~~~g~ 85 (281)
..|..++..|++++|+..|.++++.+|++..+++.+|.+|.+.|++++|+..+++++..+|.+ ..++..++.+|...|+
T Consensus 185 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 185 ELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC
Confidence 345555566666666666666666666666666666666666666666666666666665544 3345556666666666
Q ss_pred HHHHHHHHHHhhhcCCCCh
Q 023518 86 YETAKVALEKGASLAPGDS 104 (281)
Q Consensus 86 ~~~A~~~~~~a~~~~p~~~ 104 (281)
+++|...++++++.+|+..
T Consensus 265 ~~~A~~~l~~~~~~~p~~~ 283 (389)
T PRK11788 265 EAEGLEFLRRALEEYPGAD 283 (389)
T ss_pred HHHHHHHHHHHHHhCCCch
Confidence 6666666666666665543
No 104
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.90 E-value=2.2e-08 Score=104.21 Aligned_cols=101 Identities=15% Similarity=0.055 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~ 83 (281)
.+...|..+...|++++|+..|.+++..+|+++.+++.+|.+|..+|++++|+..+++++...|++..++..+|.++..+
T Consensus 605 ~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~ 684 (1157)
T PRK11447 605 IDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAAL 684 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHhhhcCCCCh
Q 023518 84 EEYETAKVALEKGASLAPGDS 104 (281)
Q Consensus 84 g~~~~A~~~~~~a~~~~p~~~ 104 (281)
|++++|..+|++++...|.++
T Consensus 685 g~~~eA~~~~~~al~~~~~~~ 705 (1157)
T PRK11447 685 GDTAAAQRTFNRLIPQAKSQP 705 (1157)
T ss_pred CCHHHHHHHHHHHhhhCccCC
Confidence 999999999999999876654
No 105
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.87 E-value=3.4e-08 Score=78.38 Aligned_cols=92 Identities=23% Similarity=0.177 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc---HHHHHHHH
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWRKA 77 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~---~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~---~~a~~~~g 77 (281)
..+..+...+..+++..+...+...+..+|+. ..+.+.+|.+++..|+|++|+..|+.++...++. ..+.+++|
T Consensus 13 ~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 13 ALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 34444555555555555555555555555555 3445555555555555555555555555544332 33555555
Q ss_pred HHHHHhhcHHHHHHHHHH
Q 023518 78 TACMKLEEYETAKVALEK 95 (281)
Q Consensus 78 ~~~~~~g~~~~A~~~~~~ 95 (281)
.+++..|+|++|+..++.
T Consensus 93 ~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHcCCHHHHHHHHHh
Confidence 555555555555555544
No 106
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.87 E-value=1.1e-09 Score=95.80 Aligned_cols=111 Identities=32% Similarity=0.412 Sum_probs=100.4
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (281)
|....-++..++.+|+++.|++.|+.++.++|..+.+|..|+.+++++++...|+.+|+.|+.++|+....|-.+|.+..
T Consensus 114 a~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~r 193 (377)
T KOG1308|consen 114 ANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAER 193 (377)
T ss_pred HHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHH
Confidence 45667788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhhcCCCChhHHHHHHHH
Q 023518 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (281)
Q Consensus 82 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 113 (281)
.+|+|++|..+|..+.+++-+ ...-.|+..+
T Consensus 194 llg~~e~aa~dl~~a~kld~d-E~~~a~lKeV 224 (377)
T KOG1308|consen 194 LLGNWEEAAHDLALACKLDYD-EANSATLKEV 224 (377)
T ss_pred HhhchHHHHHHHHHHHhcccc-HHHHHHHHHh
Confidence 999999999999999999854 3344444443
No 107
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.86 E-value=9.5e-09 Score=70.36 Aligned_cols=67 Identities=21% Similarity=0.354 Sum_probs=61.3
Q ss_pred HHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHH
Q 023518 46 SIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE 112 (281)
Q Consensus 46 ~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 112 (281)
++..|+|++|+..|++++..+|++..+++.+|.+|+..|++++|...+++++..+|+++.++..+++
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 4678999999999999999999999999999999999999999999999999999998877776654
No 108
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.84 E-value=1.2e-07 Score=72.56 Aligned_cols=97 Identities=21% Similarity=0.048 Sum_probs=87.5
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC---cHHHHHH
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWR 75 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~---~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~---~~~a~~~ 75 (281)
++.+++.|..+-..|+.++|+.+|++++...... ..+++.+|.++..+|++++|+..++.++...|+ +......
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 3568999999999999999999999999975444 578999999999999999999999999999888 7778888
Q ss_pred HHHHHHHhhcHHHHHHHHHHhhh
Q 023518 76 KATACMKLEEYETAKVALEKGAS 98 (281)
Q Consensus 76 ~g~~~~~~g~~~~A~~~~~~a~~ 98 (281)
++.+++.+|++++|+..+-.++.
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999987764
No 109
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.83 E-value=5.2e-08 Score=82.69 Aligned_cols=115 Identities=21% Similarity=0.254 Sum_probs=104.7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhc
Q 023518 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE 85 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~ 85 (281)
...+..++..|+-+.++....+++..+|.+..++...|..++..|+|.+|+..++++..+.|+++++|..+|.+|.++|+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccC
Confidence 45677888899999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 86 YETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 86 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
++.|...|.+++++.|+++.+...+......-++.
T Consensus 150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~ 184 (257)
T COG5010 150 FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDL 184 (257)
T ss_pred hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCH
Confidence 99999999999999999999888877766544443
No 110
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.83 E-value=3.6e-08 Score=94.14 Aligned_cols=104 Identities=15% Similarity=0.156 Sum_probs=93.5
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHH--HHHHHHHcCCCcHHHHHHHHHH
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVA--DANRAIELEPSMSKAYWRKATA 79 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~--~~~~al~l~p~~~~a~~~~g~~ 79 (281)
+..++..|..+...|.+.+|.+.|..|+..+|+++.....+|.++...|+-..|.. .+..+++++|.+.++||.+|.+
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v 763 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEV 763 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 34578889999999999999999999999999999999999999999998777777 8999999999999999999999
Q ss_pred HHHhhcHHHHHHHHHHhhhcCCCChh
Q 023518 80 CMKLEEYETAKVALEKGASLAPGDSR 105 (281)
Q Consensus 80 ~~~~g~~~~A~~~~~~a~~~~p~~~~ 105 (281)
+..+|+.++|..||+-|+++++.++-
T Consensus 764 ~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 764 FKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHccchHHHHHHHHHHHhhccCCCc
Confidence 99999999999999999999887763
No 111
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=3.1e-08 Score=91.74 Aligned_cols=110 Identities=18% Similarity=0.220 Sum_probs=94.1
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCC----CC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 023518 6 EKKAKEAFIDDYFELAYDLYSQAIEISP----NS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~~p----~~---~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~ 78 (281)
...|..+|..+.|.+|+.+|..++..-+ .. ...+.++|.++.++++|++|+..++++|.+.|.++..+...|.
T Consensus 418 ~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~ 497 (611)
T KOG1173|consen 418 HELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGY 497 (611)
T ss_pred hhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHH
Confidence 3456777888888888888888874311 11 2358999999999999999999999999999999999999999
Q ss_pred HHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHH
Q 023518 79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEE 115 (281)
Q Consensus 79 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 115 (281)
+|..+|+++.|+.+|.+++-+.|++.-....+..+-.
T Consensus 498 iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 498 IYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 9999999999999999999999999877777776644
No 112
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.83 E-value=2.8e-08 Score=87.43 Aligned_cols=115 Identities=20% Similarity=0.245 Sum_probs=94.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 023518 6 EKKAKEAFIDDYFELAYDLYSQAIEIS--PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~~--p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~ 83 (281)
......++..++++++...+.++.... +.++.+|..+|.++.+.|++++|+.+++++++++|++..++..++..+...
T Consensus 114 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~ 193 (280)
T PF13429_consen 114 LSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDM 193 (280)
T ss_dssp ----H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC
Confidence 344566788999999999999977654 678899999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 84 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
|+++++...+.......|.++.++..++.+...+++.
T Consensus 194 ~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~ 230 (280)
T PF13429_consen 194 GDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRY 230 (280)
T ss_dssp CHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-H
T ss_pred CChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccc
Confidence 9999999999999988899998888888888888776
No 113
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.82 E-value=7.6e-08 Score=77.65 Aligned_cols=98 Identities=19% Similarity=0.312 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc----------CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhc--
Q 023518 18 FELAYDLYSQAIEISPNSAELFADRAQASIKLQ----------NFTEAVADANRAIELEPSMSKAYWRKATACMKLEE-- 85 (281)
Q Consensus 18 y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~----------~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~-- 85 (281)
|+.|.+.+......+|.+++.+++-|.+++.+. -+++|+.-|+.||.++|+...+++.+|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 688999999999999999999999999999883 36778888999999999999999999999998764
Q ss_pred ---------HHHHHHHHHHhhhcCCCChhHHHHHHHHHH
Q 023518 86 ---------YETAKVALEKGASLAPGDSRFTNLIKECEE 115 (281)
Q Consensus 86 ---------~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 115 (281)
|++|..+|++|...+|++..++.-+..+.+
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAK 125 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 899999999999999999988887777643
No 114
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.80 E-value=5.2e-08 Score=88.82 Aligned_cols=83 Identities=22% Similarity=0.229 Sum_probs=77.7
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (281)
+..++.+|.+++..|+|++|+..+.+++.++|+++.+|+++|.+|+.+|+|++|+.+|+++++++|++..++..++.|..
T Consensus 36 ~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 36 AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999998888877
Q ss_pred Hhh
Q 023518 82 KLE 84 (281)
Q Consensus 82 ~~g 84 (281)
.+.
T Consensus 116 kl~ 118 (356)
T PLN03088 116 KIA 118 (356)
T ss_pred HHH
Confidence 764
No 115
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.78 E-value=2.2e-08 Score=90.71 Aligned_cols=119 Identities=18% Similarity=0.201 Sum_probs=104.2
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (281)
+.++-++|+..|..|+|++|.+.|.++|..+..-..+++++|..+..+|+.++|+.+|-+...+--++..+++.++.+|.
T Consensus 490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye 569 (840)
T KOG2003|consen 490 AAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYE 569 (840)
T ss_pred HHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34567789999999999999999999999887778899999999999999999999999888877788999999999999
Q ss_pred HhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 82 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
.+.+..+|++++-++..+-|+++.+..-++.++.+-+..
T Consensus 570 ~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdk 608 (840)
T KOG2003|consen 570 LLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDK 608 (840)
T ss_pred HhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccch
Confidence 999999999999999999999998877777776655443
No 116
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.78 E-value=3.1e-07 Score=77.74 Aligned_cols=115 Identities=19% Similarity=0.194 Sum_probs=76.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCCC----------------------------------HHHHHHHHHHHHHccC
Q 023518 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNS----------------------------------AELFADRAQASIKLQN 51 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~~p~~----------------------------------~~~~~~~a~~~~~l~~ 51 (281)
.-.|..+-..|+|++|+++|+..+.-+|+| .++|..++..|+..|+
T Consensus 90 ~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~ 169 (289)
T KOG3060|consen 90 KLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGD 169 (289)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhH
Confidence 446777778888888888888888888877 4456666666666666
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhh---cHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 52 FTEAVADANRAIELEPSMSKAYWRKATACMKLE---EYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 52 ~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g---~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
|+.|.-+++..+-+.|.++..+.++|.++|-+| ++.-|..+|.++++++|.+...+..+-.|...+.+.
T Consensus 170 f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~ 241 (289)
T KOG3060|consen 170 FEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQI 241 (289)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666666554 455566666666666665555555555565555544
No 117
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.77 E-value=3.1e-08 Score=90.67 Aligned_cols=63 Identities=17% Similarity=0.173 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHHc
Q 023518 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAEL---FADRAQASIKLQNFTEAVADANRAIEL 65 (281)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~---~~~~a~~~~~l~~~~~A~~~~~~al~l 65 (281)
..+++.|.+|+..|+|++|+..|+++|.++|++..+ |+++|.||..+|++++|+.++++|+++
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455566666666666666666666666666665533 666666666666666666666666665
No 118
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.77 E-value=7.2e-08 Score=78.34 Aligned_cols=111 Identities=14% Similarity=0.096 Sum_probs=96.4
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHH
Q 023518 8 KAKEAFIDDYFELAYDLYSQAIEISPNS--AELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRKATACMK 82 (281)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~~al~~~p~~--~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~---~~~a~~~~g~~~~~ 82 (281)
+.+.+|..+.|..+...+...++.++.+ ..++++.|.++..+|++++|+..|++++.+.++ .+.+++++|.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~ 84 (168)
T CHL00033 5 QRNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS 84 (168)
T ss_pred cccccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH
Confidence 4567888889999999998887776665 677899999999999999999999999998765 34689999999999
Q ss_pred hhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHH
Q 023518 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (281)
Q Consensus 83 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~ 118 (281)
+|++++|+.+|++++.++|........+..+...++
T Consensus 85 ~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 85 NGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 999999999999999999998887777777776444
No 119
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.75 E-value=1.4e-07 Score=86.44 Aligned_cols=69 Identities=23% Similarity=0.215 Sum_probs=66.4
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHH---HHHHHHHHHHhhcHHHHHHHHHHhhhc
Q 023518 31 ISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKA---YWRKATACMKLEEYETAKVALEKGASL 99 (281)
Q Consensus 31 ~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a---~~~~g~~~~~~g~~~~A~~~~~~a~~~ 99 (281)
.+|+++.+++++|.+|+.+|+|++|+..|++|++++|++..+ ||++|.+|..+|++++|+.+|++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 579999999999999999999999999999999999999855 999999999999999999999999997
No 120
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.74 E-value=2.6e-07 Score=87.97 Aligned_cols=101 Identities=23% Similarity=0.184 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhcC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--------------------------------
Q 023518 4 DLEKKAKEAFIDDY---FELAYDLYSQAIEISPNSAELFADRAQASIK-------------------------------- 48 (281)
Q Consensus 4 ~l~~~g~~~~~~~~---y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~-------------------------------- 48 (281)
+++.+|..++..++ +..|+.+|++|++++|+++.+|..++.+|..
T Consensus 341 ~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~ 420 (517)
T PRK10153 341 TLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLP 420 (517)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCCh
Confidence 56677777765544 7788888888888888886666655555433
Q ss_pred ------------ccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChh
Q 023518 49 ------------LQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR 105 (281)
Q Consensus 49 ------------l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 105 (281)
.|++++|...+++|+.++| +..+|..+|.++...|++++|...|++|++++|.++.
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 2555555555555555555 3455555555555555555555555555555555553
No 121
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.73 E-value=2.3e-07 Score=84.86 Aligned_cols=110 Identities=21% Similarity=0.140 Sum_probs=97.0
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcH
Q 023518 7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY 86 (281)
Q Consensus 7 ~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~ 86 (281)
..+..++..+++.+|++.+.+++.++|+...+.+++|++|++.|++.+|+..+++.+..+|+++..|..+|.+|..+|+-
T Consensus 345 ~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 345 LAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNR 424 (484)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCch
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHhhhcCCCChhHHHHHHHHHHH
Q 023518 87 ETAKVALEKGASLAPGDSRFTNLIKECEER 116 (281)
Q Consensus 87 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 116 (281)
.+|...+.....+..+-..+...+..+..+
T Consensus 425 ~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 425 AEALLARAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 888888888877776655555544444433
No 122
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.72 E-value=1.4e-07 Score=88.61 Aligned_cols=117 Identities=10% Similarity=0.073 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~ 83 (281)
.+|.++..+|..++|...+......|...|.+++.+...|..+..+|+-++|......+++.++...-+|..+|..+...
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 84 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
++|++|+.||+.|+.++|+|.++++-++-++.+++..
T Consensus 89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~ 125 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDY 125 (700)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999998888888776
No 123
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.71 E-value=5.1e-07 Score=79.52 Aligned_cols=110 Identities=18% Similarity=0.182 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~ 83 (281)
.+..+...++-.||+..|++..+..|+..|=++.++..||.||+..|+...|+.+.+.+-++..++.+.+|.++..+|..
T Consensus 157 ~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~v 236 (504)
T KOG0624|consen 157 VLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTV 236 (504)
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhh
Confidence 35667778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHhhhcCCCChhHHHHHHHH
Q 023518 84 EEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (281)
Q Consensus 84 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 113 (281)
|+.+.++...+.+++++|++........++
T Consensus 237 gd~~~sL~~iRECLKldpdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 237 GDAENSLKEIRECLKLDPDHKLCFPFYKKL 266 (504)
T ss_pred hhHHHHHHHHHHHHccCcchhhHHHHHHHH
Confidence 999999999999999999998654443333
No 124
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.69 E-value=2.9e-07 Score=91.87 Aligned_cols=114 Identities=11% Similarity=-0.033 Sum_probs=75.5
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (281)
++..+.++...++.|+|+.|+..|.++++.+|.++.....++.++..+|++++|+..+++++.-.+........+|.++.
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~ 113 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYR 113 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 34567889999999999999999999999999985332366666666666677766666666222333333333355666
Q ss_pred HhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHH
Q 023518 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEE 115 (281)
Q Consensus 82 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 115 (281)
.+|+|++|+..|+++++.+|+++.+...+..+..
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~ 147 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQA 147 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Confidence 6666777777777776666666655554444333
No 125
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=2.7e-07 Score=82.87 Aligned_cols=96 Identities=23% Similarity=0.210 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~ 83 (281)
.+.+.+.++.+.++|..|++..+++|..+|+|..++++||.+++.+++|+.|+.+|+++++++|.|-.+...+..+..+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999988888888887777
Q ss_pred hcHHHH-HHHHHHhhhc
Q 023518 84 EEYETA-KVALEKGASL 99 (281)
Q Consensus 84 g~~~~A-~~~~~~a~~~ 99 (281)
.++.+. ...|.+.+..
T Consensus 339 ~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 339 REYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 766654 4455554443
No 126
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.68 E-value=4.3e-07 Score=63.94 Aligned_cols=83 Identities=25% Similarity=0.354 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 023518 38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (281)
Q Consensus 38 ~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l 117 (281)
.++.+|.++...|++++|+..+++++...|.+..+++.+|.++...|++++|..+|++++...|.+......++.+....
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999887777777776655
Q ss_pred Hhh
Q 023518 118 AEE 120 (281)
Q Consensus 118 ~~~ 120 (281)
++.
T Consensus 82 ~~~ 84 (100)
T cd00189 82 GKY 84 (100)
T ss_pred HhH
Confidence 553
No 127
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=9.8e-08 Score=85.63 Aligned_cols=119 Identities=18% Similarity=0.250 Sum_probs=104.9
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH------------HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA------------ELFADRAQASIKLQNFTEAVADANRAIELEPSM 69 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~------------~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 69 (281)
+++++-+|.+++...+.+.|+..|+++|.++|+.. ..+-.+|+-.++.|+|..|.+.|..+|.++|.+
T Consensus 203 ~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n 282 (486)
T KOG0550|consen 203 AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN 282 (486)
T ss_pred hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc
Confidence 45778889999999999999999999999999873 347778999999999999999999999999974
Q ss_pred ----HHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 70 ----SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 70 ----~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
++.|+++|.+..++|+..+|+..+..++.+++.--......+.|+..+.+.
T Consensus 283 ~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~ 337 (486)
T KOG0550|consen 283 KKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKW 337 (486)
T ss_pred cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 778999999999999999999999999999988777777778888777776
No 128
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.65 E-value=9.2e-08 Score=90.98 Aligned_cols=105 Identities=20% Similarity=0.201 Sum_probs=95.5
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (281)
+.+.+..|...+.+++|.+|.++++..++++|-....|+++|.|++++++++.|..+|.+++.++|++..+|-+++-+|.
T Consensus 485 arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi 564 (777)
T KOG1128|consen 485 ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYI 564 (777)
T ss_pred HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHH
Confidence 33444556666778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhhcCCCChhH
Q 023518 82 KLEEYETAKVALEKGASLAPGDSRF 106 (281)
Q Consensus 82 ~~g~~~~A~~~~~~a~~~~p~~~~~ 106 (281)
.+|+-.+|...+++|++.+-.+-.+
T Consensus 565 ~~~~k~ra~~~l~EAlKcn~~~w~i 589 (777)
T KOG1128|consen 565 RLKKKKRAFRKLKEALKCNYQHWQI 589 (777)
T ss_pred HHhhhHHHHHHHHHHhhcCCCCCee
Confidence 9999999999999999998655543
No 129
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.65 E-value=4.6e-07 Score=83.08 Aligned_cols=92 Identities=24% Similarity=0.334 Sum_probs=54.8
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHH
Q 023518 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE 87 (281)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~ 87 (281)
.+..++..++..+|++.+.+++..+|.+..++...|..++..++++.|+..+++++.+.|.+...|+.++.+|..+|+|+
T Consensus 206 LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e 285 (395)
T PF09295_consen 206 LARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFE 285 (395)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHH
Confidence 44555555555666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHhhhc
Q 023518 88 TAKVALEKGASL 99 (281)
Q Consensus 88 ~A~~~~~~a~~~ 99 (281)
.|+..++.+.-.
T Consensus 286 ~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 286 NALLALNSCPML 297 (395)
T ss_pred HHHHHHhcCcCC
Confidence 666555544333
No 130
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.63 E-value=3.9e-07 Score=89.11 Aligned_cols=113 Identities=14% Similarity=0.095 Sum_probs=74.5
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS-AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~-~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~ 80 (281)
|+.++..|..+...|+|++|-.+|.+++..++++ .-.++.+|+.|++.|+++.|..+|++++...|++.+....+|..|
T Consensus 307 aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Ly 386 (1018)
T KOG2002|consen 307 AESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLY 386 (1018)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHH
Confidence 4556666777777777777777777777766666 455666777777777777777777777777777766666677666
Q ss_pred HHhh----cHHHHHHHHHHhhhcCCCChhHHHHHHHHH
Q 023518 81 MKLE----EYETAKVALEKGASLAPGDSRFTNLIKECE 114 (281)
Q Consensus 81 ~~~g----~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 114 (281)
...+ .-+.|...+.++++..|.+...+..++.+.
T Consensus 387 a~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 387 AHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL 424 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 6664 455666666666666666665555544443
No 131
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.63 E-value=3.7e-07 Score=88.61 Aligned_cols=100 Identities=18% Similarity=0.076 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 023518 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPN-SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (281)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~-~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (281)
+-+++.+.++...|+|.+|+.+|..++...+. +..+|+.+|.||..+|.|++|++.|.+++.++|++.++...++.++.
T Consensus 415 dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~ 494 (895)
T KOG2076|consen 415 DLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQ 494 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHH
Confidence 45678899999999999999999999987554 47899999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhhcCCC
Q 023518 82 KLEEYETAKVALEKGASLAPG 102 (281)
Q Consensus 82 ~~g~~~~A~~~~~~a~~~~p~ 102 (281)
++|+.++|.+.+.....-++.
T Consensus 495 ~~g~~EkalEtL~~~~~~D~~ 515 (895)
T KOG2076|consen 495 QLGNHEKALETLEQIINPDGR 515 (895)
T ss_pred hcCCHHHHHHHHhcccCCCcc
Confidence 999999999999887644433
No 132
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.61 E-value=5.3e-07 Score=81.62 Aligned_cols=97 Identities=16% Similarity=0.137 Sum_probs=86.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHH
Q 023518 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM----SKAYWRKATAC 80 (281)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~----~~a~~~~g~~~ 80 (281)
+...|..+...|+|++|+..+++++..+|++..++..+|.+++..|++++|+..+++++...|.. ...++.+|.++
T Consensus 117 ~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 117 LGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 44678899999999999999999999999999999999999999999999999999999987643 23567899999
Q ss_pred HHhhcHHHHHHHHHHhhhcCC
Q 023518 81 MKLEEYETAKVALEKGASLAP 101 (281)
Q Consensus 81 ~~~g~~~~A~~~~~~a~~~~p 101 (281)
..+|++++|...|++++...|
T Consensus 197 ~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 197 LERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHCCCHHHHHHHHHHHhcccc
Confidence 999999999999999987666
No 133
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.61 E-value=1.7e-06 Score=80.36 Aligned_cols=117 Identities=15% Similarity=0.107 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHH
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS-KAYWRKATACMK 82 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~-~a~~~~g~~~~~ 82 (281)
....+|...+..|||+.|.+.+.++.+..|+....+...|.++..+|+++.|...+.++.+..|+.. .+....+..+..
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~ 165 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLA 165 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH
Confidence 3456777888888888888888888888888777888888888888888888888888888887764 455556888888
Q ss_pred hhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 83 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
.|+++.|...+++..+.+|+++.+...+..+....++-
T Consensus 166 ~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~ 203 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAW 203 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhH
Confidence 88888888888888888888888777777777666664
No 134
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.60 E-value=1.9e-06 Score=68.27 Aligned_cols=93 Identities=18% Similarity=0.167 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~---~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~ 80 (281)
..+..|..++..|+|++|+..|..++...++. ..+.+++|.+++..|+|++|+..++. +.-.+-.+.++..+|.+|
T Consensus 50 A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~ 128 (145)
T PF09976_consen 50 AALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIY 128 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHH
Confidence 46778999999999999999999999987665 45788899999999999999999966 334445677889999999
Q ss_pred HHhhcHHHHHHHHHHhh
Q 023518 81 MKLEEYETAKVALEKGA 97 (281)
Q Consensus 81 ~~~g~~~~A~~~~~~a~ 97 (281)
+..|++++|+..|++|+
T Consensus 129 ~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 129 LAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHCCCHHHHHHHHHHhC
Confidence 99999999999999874
No 135
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.60 E-value=2.3e-07 Score=76.91 Aligned_cols=114 Identities=22% Similarity=0.135 Sum_probs=102.4
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (281)
|.-++.+|..+-..|-+.-|.--|++++.+.|+.++++..+|..+...|+|+.|.+.|+..++++|.+--+++++|++++
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence 34567778877788888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHH
Q 023518 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEE 115 (281)
Q Consensus 82 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 115 (281)
--|+|.-|...+.+-.+-||+|+--..|+=..+.
T Consensus 145 Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~ 178 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQ 178 (297)
T ss_pred ecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 9999999999999999999999865566544443
No 136
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.58 E-value=3.2e-07 Score=79.43 Aligned_cols=84 Identities=21% Similarity=0.199 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~ 83 (281)
-+-++|.+|.+.|.|+.|++....+|.++|+...+|.++|.+|+.+|+|++|++.|++||+++|++...+-.+.++-..+
T Consensus 117 yycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l 196 (304)
T KOG0553|consen 117 YYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKL 196 (304)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh
Confidence 35678999999999999999999999999999999999999999999999999999999999999998888888888887
Q ss_pred hcHH
Q 023518 84 EEYE 87 (281)
Q Consensus 84 g~~~ 87 (281)
++..
T Consensus 197 ~e~~ 200 (304)
T KOG0553|consen 197 NEPK 200 (304)
T ss_pred cCCC
Confidence 7655
No 137
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.58 E-value=9.5e-07 Score=88.24 Aligned_cols=112 Identities=14% Similarity=0.128 Sum_probs=92.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhh
Q 023518 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (281)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g 84 (281)
+...|..+...|+|++|+++|+++++.+|+++.++..++.++...+++++|+..+++++..+|.+... ..++.++...+
T Consensus 105 llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~ 183 (822)
T PRK14574 105 LASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATD 183 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcc
Confidence 34447788889999999999999999999999999999999999999999999999999999986544 44566665677
Q ss_pred cHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 023518 85 EYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (281)
Q Consensus 85 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l 117 (281)
++.+|+..|+++++.+|++..+...+-.+...+
T Consensus 184 ~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~ 216 (822)
T PRK14574 184 RNYDALQASSEAVRLAPTSEEVLKNHLEILQRN 216 (822)
T ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 787799999999999999998765555544433
No 138
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.58 E-value=4.7e-07 Score=84.29 Aligned_cols=97 Identities=19% Similarity=0.156 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhh
Q 023518 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (281)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g 84 (281)
-+..|..+++.|+..+|+-+|..+++.+|.++++|..+|.++...++-..|+..+++|++++|++..++..+|++|...|
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG 367 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhhhcCC
Q 023518 85 EYETAKVALEKGASLAP 101 (281)
Q Consensus 85 ~~~~A~~~~~~a~~~~p 101 (281)
.-.+|..+|.+-++..|
T Consensus 368 ~q~~Al~~L~~Wi~~~p 384 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKP 384 (579)
T ss_pred hHHHHHHHHHHHHHhCc
Confidence 99999999988877654
No 139
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.57 E-value=1.4e-07 Score=82.52 Aligned_cols=107 Identities=14% Similarity=0.234 Sum_probs=81.1
Q ss_pred HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHhhcHHHHH
Q 023518 14 IDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP---SMSKAYWRKATACMKLEEYETAK 90 (281)
Q Consensus 14 ~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p---~~~~a~~~~g~~~~~~g~~~~A~ 90 (281)
..++.+-|+.+|++.|...-.+++++.++|.|.+-.++|+-++..|.+|+...- .-+++||++|.+....|++.-|.
T Consensus 336 Y~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~ 415 (478)
T KOG1129|consen 336 YDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAK 415 (478)
T ss_pred cCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHH
Confidence 333444444444444444444477788899999989999999999999987654 23778999999999999999999
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 91 VALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 91 ~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
.+|+-++..++++.+....++.+..+-++.
T Consensus 416 rcfrlaL~~d~~h~ealnNLavL~~r~G~i 445 (478)
T KOG1129|consen 416 RCFRLALTSDAQHGEALNNLAVLAARSGDI 445 (478)
T ss_pred HHHHHHhccCcchHHHHHhHHHHHhhcCch
Confidence 999999999999998888888877655554
No 140
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.57 E-value=4.5e-07 Score=74.00 Aligned_cols=87 Identities=16% Similarity=0.137 Sum_probs=76.5
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHH
Q 023518 33 PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNL 109 (281)
Q Consensus 33 p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 109 (281)
+..+.+++.+|.++...|++++|+..|++++.+.++. ..+++.+|.++..+|+|++|..+|+++++.+|.+......
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 3457789999999999999999999999999887653 5799999999999999999999999999999999888777
Q ss_pred HHHHHHHHHh
Q 023518 110 IKECEERIAE 119 (281)
Q Consensus 110 l~~~~~~l~~ 119 (281)
++.+...+++
T Consensus 112 lg~~~~~~g~ 121 (172)
T PRK02603 112 IAVIYHKRGE 121 (172)
T ss_pred HHHHHHHcCC
Confidence 7777765544
No 141
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.54 E-value=1.2e-07 Score=66.83 Aligned_cols=65 Identities=18% Similarity=0.300 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC----C---CcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhc
Q 023518 35 SAELFADRAQASIKLQNFTEAVADANRAIELE----P---SMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (281)
Q Consensus 35 ~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~----p---~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~ 99 (281)
-+.++.++|.+|..+|+|++|+..|++++.+. + ..+.++.++|.++..+|++++|+.++++++++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35678899999999999999999999998652 1 23678888999999999999999999998765
No 142
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.54 E-value=3.6e-06 Score=71.41 Aligned_cols=85 Identities=19% Similarity=0.132 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 023518 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ---NFTEAVADANRAIELEPSMSKAYWRKATA 79 (281)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~---~~~~A~~~~~~al~l~p~~~~a~~~~g~~ 79 (281)
+.|...+..|+..|+|.+|.-+|.+.+-.+|.++.++.++|.+++-+| ++.-|...|.++++++|.+..++|.+..|
T Consensus 155 EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 155 EAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLC 234 (289)
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999876 78899999999999999998898887777
Q ss_pred HHHhhcHH
Q 023518 80 CMKLEEYE 87 (281)
Q Consensus 80 ~~~~g~~~ 87 (281)
...+-+..
T Consensus 235 ~~~la~~s 242 (289)
T KOG3060|consen 235 GSALAQIS 242 (289)
T ss_pred HHHHHHHh
Confidence 76654443
No 143
>PRK11906 transcriptional regulator; Provisional
Probab=98.53 E-value=2e-06 Score=79.13 Aligned_cols=113 Identities=10% Similarity=0.007 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHhc---CHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHcCCC
Q 023518 4 DLEKKAKEAFIDD---YFELAYDLYSQAI---EISPNSAELFADRAQASIKL---------QNFTEAVADANRAIELEPS 68 (281)
Q Consensus 4 ~l~~~g~~~~~~~---~y~~Al~~y~~al---~~~p~~~~~~~~~a~~~~~l---------~~~~~A~~~~~~al~l~p~ 68 (281)
.++.+|...+.++ .-+.|+.+|.+|+ .++|..+.+|..+|.||... ....+|.+.+++|+++++.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 4566677665444 4577888899999 88899899999999998876 2466788889999999999
Q ss_pred cHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHH
Q 023518 69 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER 116 (281)
Q Consensus 69 ~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 116 (281)
++.+++.+|.++...++++.|...|++|+.++|+....+.+.+.+...
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~ 384 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH 384 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998887777665443
No 144
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.52 E-value=1.1e-06 Score=86.00 Aligned_cols=116 Identities=16% Similarity=0.166 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc-HHHHHHHHH
Q 023518 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM-SKAYWRKAT 78 (281)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~---~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~-~~a~~~~g~ 78 (281)
..+...++-+|..|+|..+.+++..++...-.. ++.++.+|.+|..+|+|++|..+|..++..++++ ..+++.+|+
T Consensus 271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQ 350 (1018)
T KOG2002|consen 271 VALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQ 350 (1018)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhH
Confidence 456778889999999999999999999876444 4569999999999999999999999999999988 889999999
Q ss_pred HHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHH
Q 023518 79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (281)
Q Consensus 79 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~ 118 (281)
.|.+.|+++.|..+|++.++..|++......++.++...+
T Consensus 351 m~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~ 390 (1018)
T KOG2002|consen 351 MYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA 390 (1018)
T ss_pred HHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh
Confidence 9999999999999999999999999999888888877663
No 145
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.51 E-value=4.9e-07 Score=79.20 Aligned_cols=118 Identities=13% Similarity=0.008 Sum_probs=82.9
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (281)
.+.+.-.+..|.+.++...|+..|.+.++..|.+..++...|.+|..++++++|++.|+.+++++|.+.++.-..|..||
T Consensus 256 ~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yf 335 (478)
T KOG1129|consen 256 PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYF 335 (478)
T ss_pred hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccc
Confidence 44555666666666677777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHh
Q 023518 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (281)
Q Consensus 82 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~ 119 (281)
.-++.+-|+.+|++.+++.-.++++...++-|--.-++
T Consensus 336 Y~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ 373 (478)
T KOG1129|consen 336 YDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQ 373 (478)
T ss_pred cCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcc
Confidence 77777777777777777777777776666666544443
No 146
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.51 E-value=1.4e-06 Score=65.67 Aligned_cols=84 Identities=14% Similarity=0.145 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCCh---hHHHH
Q 023518 36 AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWRKATACMKLEEYETAKVALEKGASLAPGDS---RFTNL 109 (281)
Q Consensus 36 ~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~~ 109 (281)
+..++.+|..+...|++++|+..+..++..+|++ ..+++.+|.+++..|+++.|..+|+.++..+|++. .+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4578999999999999999999999999999876 67999999999999999999999999999998864 34555
Q ss_pred HHHHHHHHHh
Q 023518 110 IKECEERIAE 119 (281)
Q Consensus 110 l~~~~~~l~~ 119 (281)
++.+...+++
T Consensus 82 ~~~~~~~~~~ 91 (119)
T TIGR02795 82 LGMSLQELGD 91 (119)
T ss_pred HHHHHHHhCC
Confidence 5666555444
No 147
>PRK11906 transcriptional regulator; Provisional
Probab=98.49 E-value=2.2e-06 Score=78.82 Aligned_cols=91 Identities=14% Similarity=0.145 Sum_probs=86.2
Q ss_pred hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHH
Q 023518 15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALE 94 (281)
Q Consensus 15 ~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~ 94 (281)
..+-.+|+++-.+|+++++.|+.++..+|.++...++++.|+..|++|+.++|+.+.+|+..|.+++..|+.++|..+++
T Consensus 317 ~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 317 ELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCChh
Q 023518 95 KGASLAPGDSR 105 (281)
Q Consensus 95 ~a~~~~p~~~~ 105 (281)
++++++|.-..
T Consensus 397 ~alrLsP~~~~ 407 (458)
T PRK11906 397 KSLQLEPRRRK 407 (458)
T ss_pred HHhccCchhhH
Confidence 99999997654
No 148
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.49 E-value=2e-06 Score=79.97 Aligned_cols=116 Identities=8% Similarity=-0.025 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHH--HHHHHHHHHccCHHHHHHHHHHHHHcCCCcH--HHHHHHHHH
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELF--ADRAQASIKLQNFTEAVADANRAIELEPSMS--KAYWRKATA 79 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~--~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~--~a~~~~g~~ 79 (281)
.....|..+...|++++|+..+.++++..|++.... ..+....+..++...++..++++++..|+++ ..+..+|.+
T Consensus 265 l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l 344 (409)
T TIGR00540 265 LKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQL 344 (409)
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Confidence 456678899999999999999999999999987532 3344444456889999999999999999999 888899999
Q ss_pred HHHhhcHHHHHHHHH--HhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 80 CMKLEEYETAKVALE--KGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 80 ~~~~g~~~~A~~~~~--~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
+++.|+|++|..+|+ .+++..|++.... .++.+..++++.
T Consensus 345 ~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~~ 386 (409)
T TIGR00540 345 LMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQAGDK 386 (409)
T ss_pred HHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCCH
Confidence 999999999999999 6888889777644 777777766654
No 149
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=3e-06 Score=73.65 Aligned_cols=105 Identities=16% Similarity=0.130 Sum_probs=94.6
Q ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhh---cHHHHHHH
Q 023518 16 DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE---EYETAKVA 92 (281)
Q Consensus 16 ~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g---~~~~A~~~ 92 (281)
.+.+..+..++.-|..+|+|+.-|..+|.+|+.+|++..|+..|.+|+++.|+++..+..+|.+++... .-.++...
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 346777888899999999999999999999999999999999999999999999999999999988875 46689999
Q ss_pred HHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 93 LEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 93 ~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
|++++.+||.|......++......++.
T Consensus 216 l~~al~~D~~~iral~lLA~~afe~g~~ 243 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAFEQGDY 243 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHcccH
Confidence 9999999999999988888877666555
No 150
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.47 E-value=6.8e-06 Score=76.12 Aligned_cols=115 Identities=14% Similarity=0.116 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHh
Q 023518 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSK-AYWRKATACMKL 83 (281)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~-a~~~~g~~~~~~ 83 (281)
.+..|...+..|||+.|.+...++-+..+.....+...+.+....|+++.|...+.++.+.+|+... .....+..+...
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~ 166 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLAR 166 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHC
Confidence 3445555555566666665555544433222223333344445566666666666666665555532 222335566666
Q ss_pred hcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHh
Q 023518 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (281)
Q Consensus 84 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~ 119 (281)
|++++|...+++..+.+|+++.+...+..++.+.++
T Consensus 167 g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gd 202 (398)
T PRK10747 167 NENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGA 202 (398)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Confidence 666666666666666666666555555555444433
No 151
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.45 E-value=3.9e-06 Score=73.50 Aligned_cols=116 Identities=16% Similarity=0.214 Sum_probs=94.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 023518 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS-----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA 79 (281)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~-----~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~ 79 (281)
+...-+.|...++|++|++.-.+..+..++. +.+|..+|..+....+.+.|+..+.+|++.+|+...+-..+|.+
T Consensus 144 lqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v 223 (389)
T COG2956 144 LQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRV 223 (389)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHH
Confidence 4445566777788888888888888877665 56788888888888899999999999999999999999999999
Q ss_pred HHHhhcHHHHHHHHHHhhhcCCCCh-hHHHHHHHHHHHHHhh
Q 023518 80 CMKLEEYETAKVALEKGASLAPGDS-RFTNLIKECEERIAEE 120 (281)
Q Consensus 80 ~~~~g~~~~A~~~~~~a~~~~p~~~-~~~~~l~~~~~~l~~~ 120 (281)
+...|+|++|++.++.+++.+|.-- .+...+..|+..+++.
T Consensus 224 ~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~ 265 (389)
T COG2956 224 ELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKP 265 (389)
T ss_pred HHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCH
Confidence 9999999999999999999988653 4566677777777665
No 152
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.42 E-value=3.1e-06 Score=84.29 Aligned_cols=113 Identities=13% Similarity=0.055 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcH------------
Q 023518 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS------------ 70 (281)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~------------ 70 (281)
+.+......+...+++++|+.....+++.+|+...+|+..|..++..+++.++... .++.+.+.+.
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i 109 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKI 109 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHH
Confidence 45667778888999999999999999999999999999999998888887777555 5555544444
Q ss_pred -------HHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 023518 71 -------KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (281)
Q Consensus 71 -------~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l 117 (281)
.+++.+|.||-++|++++|...|+++++++|+|..+...++......
T Consensus 110 ~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 110 LLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE 163 (906)
T ss_pred HhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh
Confidence 79999999999999999999999999999999988777666555444
No 153
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.41 E-value=3.9e-06 Score=75.94 Aligned_cols=117 Identities=16% Similarity=0.044 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHH-------------------------------------HHHHHHHH
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAEL-------------------------------------FADRAQAS 46 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~-------------------------------------~~~~a~~~ 46 (281)
....+|..++..|++++|+..+.++++.+|++..+ +..+|.++
T Consensus 45 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~ 124 (355)
T cd05804 45 RAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGL 124 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHH
Confidence 34567888888999999999999988888876533 23456677
Q ss_pred HHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhH----HHHHHHHHHHHHhh
Q 023518 47 IKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF----TNLIKECEERIAEE 120 (281)
Q Consensus 47 ~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~----~~~l~~~~~~l~~~ 120 (281)
..+|++++|+..+++++.++|++..++..+|.+++..|++++|..++++++...|.+... +..+..+....++.
T Consensus 125 ~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~ 202 (355)
T cd05804 125 EEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDY 202 (355)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCH
Confidence 888999999999999999999998899999999999999999999999999988754432 22455665555555
No 154
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.40 E-value=1.5e-05 Score=67.98 Aligned_cols=119 Identities=20% Similarity=0.174 Sum_probs=98.2
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc---HHHHHH
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWR 75 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~---~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~---~~a~~~ 75 (281)
+..|+++|...++.|+|.+|+..|..+..+.|.+ ..+.+.++.++++.++|++|+..+++-+++.|.+ .-++|.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 4679999999999999999999999999998876 5789999999999999999999999999999865 447888
Q ss_pred HHHHHHHh--------hcHHHHHHHHHHhhhcCCCChh---HHHHHHHHHHHHHhh
Q 023518 76 KATACMKL--------EEYETAKVALEKGASLAPGDSR---FTNLIKECEERIAEE 120 (281)
Q Consensus 76 ~g~~~~~~--------g~~~~A~~~~~~a~~~~p~~~~---~~~~l~~~~~~l~~~ 120 (281)
+|.+++.. .--.+|...|+..+...|+..- +...+..+..+|...
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~ 169 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGH 169 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHH
Confidence 89988764 2345788888999999998763 455555555555554
No 155
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.39 E-value=1.4e-06 Score=80.47 Aligned_cols=107 Identities=26% Similarity=0.286 Sum_probs=97.3
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKL---QNFTEAVADANRAIELEPSMSKAYWRKAT 78 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l---~~~~~A~~~~~~al~l~p~~~~a~~~~g~ 78 (281)
++.++..|+..+..+....|+..|.+++...|+...+|.+||.++++. |+.-.|+.++..|++++|...++||+++.
T Consensus 374 ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~ 453 (758)
T KOG1310|consen 374 IEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLAR 453 (758)
T ss_pred HHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHH
Confidence 456788899999999999999999999999999999999999999997 57889999999999999999999999999
Q ss_pred HHHHhhcHHHHHHHHHHhhhcCCCChhHHH
Q 023518 79 ACMKLEEYETAKVALEKGASLAPGDSRFTN 108 (281)
Q Consensus 79 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 108 (281)
++..++++.+|+.+..-+.-..|.+.....
T Consensus 454 aL~el~r~~eal~~~~alq~~~Ptd~a~~~ 483 (758)
T KOG1310|consen 454 ALNELTRYLEALSCHWALQMSFPTDVARQN 483 (758)
T ss_pred HHHHHhhHHHhhhhHHHHhhcCchhhhhhh
Confidence 999999999999999888888886654433
No 156
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.38 E-value=8e-07 Score=62.48 Aligned_cols=65 Identities=18% Similarity=0.283 Sum_probs=55.9
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CC-C---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI---SP-N---SAELFADRAQASIKLQNFTEAVADANRAIELE 66 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~---~p-~---~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 66 (281)
+..+...|..++..|+|++|+.+|+++++. .+ + -+..+.++|.++..+|++++|+..+++++.+.
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 456788999999999999999999999976 11 2 26789999999999999999999999999763
No 157
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.35 E-value=8e-06 Score=75.64 Aligned_cols=113 Identities=12% Similarity=0.067 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~ 83 (281)
.....|..+...|++++|...+.++++. +.+..+...++.+ ..+++.+++..+++.++.+|+++..++.+|..+...
T Consensus 265 ~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~ 341 (398)
T PRK10747 265 LQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKH 341 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Confidence 4456788999999999999999999995 4456555555554 458999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 84 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
|+|++|..+|+++++..|++.. ..++..+..++++.
T Consensus 342 ~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~ 377 (398)
T PRK10747 342 GEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKP 377 (398)
T ss_pred CCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCH
Confidence 9999999999999999998765 34677777766664
No 158
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=3.7e-06 Score=75.76 Aligned_cols=109 Identities=19% Similarity=0.209 Sum_probs=96.7
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (281)
+..|+-.|..+|..++|..|+.+-.++|+.+|++..+|+..|..++.+++.++|+-.|+.|+.+.|.+...|..+-.+|.
T Consensus 300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYL 379 (564)
T KOG1174|consen 300 ASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYL 379 (564)
T ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence 34677788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhhcCCCChhHHHHH
Q 023518 82 KLEEYETAKVALEKGASLAPGDSRFTNLI 110 (281)
Q Consensus 82 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 110 (281)
..|++.+|...-+++.+.-|.+......+
T Consensus 380 A~~~~kEA~~~An~~~~~~~~sA~~LtL~ 408 (564)
T KOG1174|consen 380 AQKRFKEANALANWTIRLFQNSARSLTLF 408 (564)
T ss_pred hhchHHHHHHHHHHHHHHhhcchhhhhhh
Confidence 99999888888888887777766654444
No 159
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.33 E-value=1e-06 Score=62.97 Aligned_cols=58 Identities=22% Similarity=0.347 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRA 62 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~a 62 (281)
.++..|.++|..|+|++|+..+++ +..++.+....+.+|.|++++|+|++|+..++++
T Consensus 27 ~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 27 YLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 456789999999999999999999 8888888888889999999999999999999875
No 160
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.30 E-value=3.3e-05 Score=64.80 Aligned_cols=116 Identities=16% Similarity=0.100 Sum_probs=89.5
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHcCCC
Q 023518 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQ-----------NFTEAVADANRAIELEPS 68 (281)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~---~~~~~~~a~~~~~l~-----------~~~~A~~~~~~al~l~p~ 68 (281)
+..+..|.+++..|+|+.|+..|++.++..|++ ..+++.+|.+++.+. ...+|+..|+..+...|+
T Consensus 43 ~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~ 122 (203)
T PF13525_consen 43 QAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPN 122 (203)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcC
Confidence 467889999999999999999999999999987 468999999987764 345899999999999997
Q ss_pred c-----------------HHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHH---HHHHHHHHHHH
Q 023518 69 M-----------------SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT---NLIKECEERIA 118 (281)
Q Consensus 69 ~-----------------~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~---~~l~~~~~~l~ 118 (281)
. +.--+..|.-|++.|.|..|..-++.+++..|+..... ..+..+..+++
T Consensus 123 S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~ 192 (203)
T PF13525_consen 123 SEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLG 192 (203)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhC
Confidence 4 22334578889999999999999999999999987654 33444444443
No 161
>PRK15331 chaperone protein SicA; Provisional
Probab=98.29 E-value=6e-06 Score=66.06 Aligned_cols=89 Identities=11% Similarity=0.014 Sum_probs=82.9
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHH
Q 023518 32 SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIK 111 (281)
Q Consensus 32 ~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 111 (281)
.++.-+..+..|.-++..|++++|...|+-....++.+.+.++.+|.|+..+|+|++|+.+|..+..++++|+......+
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 44446778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 023518 112 ECEERIAEE 120 (281)
Q Consensus 112 ~~~~~l~~~ 120 (281)
.|.-.+++.
T Consensus 113 qC~l~l~~~ 121 (165)
T PRK15331 113 QCQLLMRKA 121 (165)
T ss_pred HHHHHhCCH
Confidence 999888886
No 162
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.29 E-value=1e-05 Score=77.73 Aligned_cols=116 Identities=17% Similarity=0.094 Sum_probs=107.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhh
Q 023518 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (281)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g 84 (281)
+...|..+...++-++|..++.++-..+|..+..|+.+|.++...|++.+|.+.|..|+.++|++......+|.++...|
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G 732 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELG 732 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC
Confidence 44567777788888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHH--HHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 85 EYETAKV--ALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 85 ~~~~A~~--~~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
+-.-|.. .+..+++++|.+..+|..++.+-+.+++.
T Consensus 733 ~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~ 770 (799)
T KOG4162|consen 733 SPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDS 770 (799)
T ss_pred CcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccch
Confidence 8777777 99999999999999999999998888876
No 163
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=7.4e-06 Score=76.30 Aligned_cols=106 Identities=13% Similarity=0.100 Sum_probs=96.9
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 023518 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (281)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (281)
-.|+.-|.-|+..+++.+|.++|.++..++|..+.+|+..|..+...+..++|+.+|..|-++-+......+.+|.=|.+
T Consensus 313 ~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~ 392 (611)
T KOG1173|consen 313 LSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMR 392 (611)
T ss_pred cchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHH
Confidence 35777888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhhcCCCChhHHH
Q 023518 83 LEEYETAKVALEKGASLAPGDSRFTN 108 (281)
Q Consensus 83 ~g~~~~A~~~~~~a~~~~p~~~~~~~ 108 (281)
++++.-|...|.+|+.+.|.|+-+..
T Consensus 393 t~n~kLAe~Ff~~A~ai~P~Dplv~~ 418 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIAPSDPLVLH 418 (611)
T ss_pred hccHHHHHHHHHHHHhcCCCcchhhh
Confidence 99999999999999999999885433
No 164
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.26 E-value=2.1e-05 Score=69.02 Aligned_cols=103 Identities=14% Similarity=0.129 Sum_probs=94.5
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHH
Q 023518 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM-SKAYWRKATACM 81 (281)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~-~~a~~~~g~~~~ 81 (281)
.-+-..|..+....+.+.|...+.+|+..+|+...+-+.+|.+++..|+|+.|++.++++++.+|.. +.+.-.+..||.
T Consensus 181 qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~ 260 (389)
T COG2956 181 QFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYA 260 (389)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 3455678888889999999999999999999999999999999999999999999999999999986 678888999999
Q ss_pred HhhcHHHHHHHHHHhhhcCCCChh
Q 023518 82 KLEEYETAKVALEKGASLAPGDSR 105 (281)
Q Consensus 82 ~~g~~~~A~~~~~~a~~~~p~~~~ 105 (281)
++|+.++....+.++.+..++...
T Consensus 261 ~lg~~~~~~~fL~~~~~~~~g~~~ 284 (389)
T COG2956 261 QLGKPAEGLNFLRRAMETNTGADA 284 (389)
T ss_pred HhCCHHHHHHHHHHHHHccCCccH
Confidence 999999999999999999887654
No 165
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.24 E-value=1.2e-05 Score=73.37 Aligned_cols=116 Identities=22% Similarity=0.162 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 023518 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (281)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (281)
+++++.|..+-..|+.++|+++|-+.-.+--+++..++.+|.+|..+.+...|++++.++..+-|+++..+-.+|..|-+
T Consensus 525 ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydq 604 (840)
T KOG2003|consen 525 EALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQ 604 (840)
T ss_pred HHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhc
Confidence 46777777778888888888888777666566777888888888888888888888888888877777777777776666
Q ss_pred hhc----------------------------------HHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHH
Q 023518 83 LEE----------------------------------YETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (281)
Q Consensus 83 ~g~----------------------------------~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~ 118 (281)
.|+ +++|+.+|+++--+.|+...+...++.|-++-+
T Consensus 605 egdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsg 674 (840)
T KOG2003|consen 605 EGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSG 674 (840)
T ss_pred ccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcc
Confidence 665 455555566665566655555555666655443
No 166
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.24 E-value=7e-06 Score=77.47 Aligned_cols=97 Identities=21% Similarity=0.182 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--------C
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNSAELFADRAQASIKLQNFTEAVADANRAIELE--------P 67 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~--------~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~--------p 67 (281)
.+...|..|+..|+|+.|+..+..+++. .+.-......+|..|..+++|.+|+..|++|+.+. |
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3456899999999999999999999998 44445556669999999999999999999999753 4
Q ss_pred CcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcC
Q 023518 68 SMSKAYWRKATACMKLEEYETAKVALEKGASLA 100 (281)
Q Consensus 68 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~ 100 (281)
.-+..+.++|.+|+..|+|++|..++++|+++.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~ 313 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIY 313 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 457789999999999999999999999998864
No 167
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.23 E-value=1.9e-05 Score=77.91 Aligned_cols=104 Identities=15% Similarity=0.140 Sum_probs=95.8
Q ss_pred ChhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 023518 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQN-FTEAVADANRAIELEPSMSKAYWRKATA 79 (281)
Q Consensus 1 ma~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~-~~~A~~~~~~al~l~p~~~~a~~~~g~~ 79 (281)
|+......|......++|++|++...++++++|+|..+++.+|.++..++. .++|-+.|-.|.+++|++..+|-.+|..
T Consensus 1 ~vK~aLK~Ak~al~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nL 80 (1238)
T KOG1127|consen 1 EVKTALKSAKDALRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNL 80 (1238)
T ss_pred ChhhHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHH
Confidence 456778889999999999999999999999999999999999999999998 9999999999999999999999999998
Q ss_pred HHH---hhcHHHHHHHHHHhhhcCCCCh
Q 023518 80 CMK---LEEYETAKVALEKGASLAPGDS 104 (281)
Q Consensus 80 ~~~---~g~~~~A~~~~~~a~~~~p~~~ 104 (281)
|.. .-+++++-.+|++++...++..
T Consensus 81 ye~~~dIl~ld~~~~~yq~~~l~le~q~ 108 (1238)
T KOG1127|consen 81 YERYNDILDLDRAAKCYQRAVLILENQS 108 (1238)
T ss_pred HHccchhhhhhHhHHHHHHHHHhhhhhh
Confidence 887 4578999999999998877655
No 168
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.22 E-value=3.2e-05 Score=73.58 Aligned_cols=93 Identities=19% Similarity=0.119 Sum_probs=53.3
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcH
Q 023518 7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY 86 (281)
Q Consensus 7 ~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~ 86 (281)
-.|.-+-..|+|++|+++.++||+..|+.+++|+.+|.+|-+.|++.+|...++.|..+|..+--.....+..+++.|+.
T Consensus 199 ~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~ 278 (517)
T PF12569_consen 199 FLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRI 278 (517)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCH
Confidence 34444555556666666666666666666666666666666666666666666666666655555555555555555666
Q ss_pred HHHHHHHHHhhhc
Q 023518 87 ETAKVALEKGASL 99 (281)
Q Consensus 87 ~~A~~~~~~a~~~ 99 (281)
++|...+..-.+.
T Consensus 279 e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 279 EEAEKTASLFTRE 291 (517)
T ss_pred HHHHHHHHhhcCC
Confidence 6665555544433
No 169
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.22 E-value=8.8e-06 Score=76.79 Aligned_cols=118 Identities=23% Similarity=0.246 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--------
Q 023518 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNSAELFADRAQASIKLQNFTEAVADANRAIELE-------- 66 (281)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~al~~--------~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~-------- 66 (281)
..+...|..|...++|.+|+.+|.+|+.. +|.-+..+.++|.+|.+.|+|++|..++++|+++.
T Consensus 242 ~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~ 321 (508)
T KOG1840|consen 242 SMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASH 321 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCh
Confidence 34556899999999999999999999987 34446789999999999999999999999999864
Q ss_pred CCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcC-----CCC---hhHHHHHHHHHHHHHhh
Q 023518 67 PSMSKAYWRKATACMKLEEYETAKVALEKGASLA-----PGD---SRFTNLIKECEERIAEE 120 (281)
Q Consensus 67 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~-----p~~---~~~~~~l~~~~~~l~~~ 120 (281)
+.-...+...+..+..++++++|..++++++++. +.+ ......++.+...+++.
T Consensus 322 ~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~ 383 (508)
T KOG1840|consen 322 PEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKY 383 (508)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcch
Confidence 3346678889999999999999999999998863 223 22344555555544443
No 170
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.22 E-value=4.2e-05 Score=62.33 Aligned_cols=102 Identities=23% Similarity=0.233 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHH
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIE-ISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWRKATAC 80 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~-~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~--~~~a~~~~g~~~ 80 (281)
.-+..|+++.+.|+|.+|...|.+++. ...+++..++.+|++.+.++++.+|...++...+.+|. .+..++.+|..|
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~l 170 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTL 170 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHH
Confidence 346789999999999999999999986 56788999999999999999999999999999999885 477889999999
Q ss_pred HHhhcHHHHHHHHHHhhhcCCCChh
Q 023518 81 MKLEEYETAKVALEKGASLAPGDSR 105 (281)
Q Consensus 81 ~~~g~~~~A~~~~~~a~~~~p~~~~ 105 (281)
..+|+|++|...|+.++...|+-..
T Consensus 171 aa~g~~a~Aesafe~a~~~ypg~~a 195 (251)
T COG4700 171 AAQGKYADAESAFEVAISYYPGPQA 195 (251)
T ss_pred HhcCCchhHHHHHHHHHHhCCCHHH
Confidence 9999999999999999999987553
No 171
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.22 E-value=2.6e-05 Score=71.59 Aligned_cols=105 Identities=19% Similarity=0.211 Sum_probs=97.3
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHH
Q 023518 13 FIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVA 92 (281)
Q Consensus 13 ~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~ 92 (281)
-..++|+.|+.+|.+....+|+ +...+|.+++..++..+|++.+.+++...|.+...+..-+..+...++|+.|+..
T Consensus 180 ~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~i 256 (395)
T PF09295_consen 180 SLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEI 256 (395)
T ss_pred hhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3467899999999999988875 5566899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 93 LEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 93 ~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
.+++..+.|.+...|..+++|+..+++.
T Consensus 257 Ak~av~lsP~~f~~W~~La~~Yi~~~d~ 284 (395)
T PF09295_consen 257 AKKAVELSPSEFETWYQLAECYIQLGDF 284 (395)
T ss_pred HHHHHHhCchhHHHHHHHHHHHHhcCCH
Confidence 9999999999999999999999988887
No 172
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.21 E-value=4.8e-06 Score=79.60 Aligned_cols=81 Identities=20% Similarity=0.299 Sum_probs=72.9
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHh
Q 023518 40 ADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (281)
Q Consensus 40 ~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~ 119 (281)
+..|...+..++|.++..++++.++++|-....||++|.+..+++++..|..+|.+++.++|++...|+.+..++-++++
T Consensus 489 r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~ 568 (777)
T KOG1128|consen 489 RSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKK 568 (777)
T ss_pred HhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhh
Confidence 33333344458999999999999999999999999999999999999999999999999999999999999999888887
Q ss_pred h
Q 023518 120 E 120 (281)
Q Consensus 120 ~ 120 (281)
.
T Consensus 569 k 569 (777)
T KOG1128|consen 569 K 569 (777)
T ss_pred h
Confidence 6
No 173
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.21 E-value=2.6e-05 Score=74.04 Aligned_cols=107 Identities=24% Similarity=0.264 Sum_probs=73.7
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHH
Q 023518 13 FIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVA 92 (281)
Q Consensus 13 ~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~ 92 (281)
+...+|+.|..+|.++....|+ ..+|+.-+.....+++.++|+..++.+++..|++.+.|+.+|+++.++++.+.|...
T Consensus 629 ~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~a 707 (913)
T KOG0495|consen 629 FENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREA 707 (913)
T ss_pred hccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3444444444444444443333 334566666666677778888888888888888888888888888888888888888
Q ss_pred HHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 93 LEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 93 ~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
|...++..|+...+|..+.+++...++.
T Consensus 708 Y~~G~k~cP~~ipLWllLakleEk~~~~ 735 (913)
T KOG0495|consen 708 YLQGTKKCPNSIPLWLLLAKLEEKDGQL 735 (913)
T ss_pred HHhccccCCCCchHHHHHHHHHHHhcch
Confidence 8888888888777777777777666543
No 174
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.19 E-value=3.2e-05 Score=77.25 Aligned_cols=111 Identities=10% Similarity=0.041 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-----------------
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE----------------- 66 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~----------------- 66 (281)
+++.+|.+|-+.|++++|...|+++|+.+|+|+.++.++|..|... ++++|+..+.+|+.+.
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~ 196 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLV 196 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence 6788999999999999999999999999999999999999999999 9999999999998652
Q ss_pred ---CCcHHHH--------HHHH------------HHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHH
Q 023518 67 ---PSMSKAY--------WRKA------------TACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEE 115 (281)
Q Consensus 67 ---p~~~~a~--------~~~g------------~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 115 (281)
|++...+ -.+| .+|...++|++++..|+.+++++|.|..+...+..|..
T Consensus 197 ~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 197 HYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 3332221 1123 77888899999999999999999999999888988876
No 175
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.18 E-value=2.6e-05 Score=73.95 Aligned_cols=116 Identities=17% Similarity=0.062 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~ 83 (281)
.++..++.....++.++|++++.++|+..|+...+|+.+|+++..+++.+.|...|...++..|.....|..++..-...
T Consensus 653 v~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~ 732 (913)
T KOG0495|consen 653 VWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKD 732 (913)
T ss_pred hhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHh
Confidence 45556667777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHh
Q 023518 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (281)
Q Consensus 84 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~ 119 (281)
|+.-.|+..|.++...+|.+..++...-+.+.+.+.
T Consensus 733 ~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn 768 (913)
T KOG0495|consen 733 GQLVRARSILDRARLKNPKNALLWLESIRMELRAGN 768 (913)
T ss_pred cchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCC
Confidence 999999999999999999998766555554444433
No 176
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.15 E-value=0.00013 Score=63.07 Aligned_cols=110 Identities=14% Similarity=0.074 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccC------------------HHHHHHHHHHH
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQN------------------FTEAVADANRA 62 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~---~~~~~~~a~~~~~l~~------------------~~~A~~~~~~a 62 (281)
..+..|.++++.++|++|+..|++.++.+|++ ..+++.+|.++..+++ ..+|+..++..
T Consensus 71 a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~l 150 (243)
T PRK10866 71 VQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKL 150 (243)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHH
Confidence 45788999999999999999999999998887 5778999998765541 35788999999
Q ss_pred HHcCCCc-----------------HHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHH
Q 023518 63 IELEPSM-----------------SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (281)
Q Consensus 63 l~l~p~~-----------------~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 113 (281)
++..|+. +.--+..|.-|++.|.|..|+.-++..++..|+.+.....+-.+
T Consensus 151 i~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l 218 (243)
T PRK10866 151 VRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLM 218 (243)
T ss_pred HHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHH
Confidence 9999974 11223467778999999999999999999999887654444443
No 177
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.15 E-value=2.3e-05 Score=60.07 Aligned_cols=84 Identities=19% Similarity=0.145 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCC---ChhHHHHH
Q 023518 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWRKATACMKLEEYETAKVALEKGASLAPG---DSRFTNLI 110 (281)
Q Consensus 37 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~---~~~~~~~l 110 (281)
.+++++|.++-.+|+.++|+..|++++..+... ..+++.+|.++..+|++++|...++.++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 468999999999999999999999999976543 679999999999999999999999999999888 56666666
Q ss_pred HHHHHHHHhh
Q 023518 111 KECEERIAEE 120 (281)
Q Consensus 111 ~~~~~~l~~~ 120 (281)
..+...+++.
T Consensus 82 Al~L~~~gr~ 91 (120)
T PF12688_consen 82 ALALYNLGRP 91 (120)
T ss_pred HHHHHHCCCH
Confidence 6655444443
No 178
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.13 E-value=6e-06 Score=51.49 Aligned_cols=42 Identities=26% Similarity=0.238 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 023518 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (281)
Q Consensus 37 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~ 78 (281)
.+++.+|.+|..+|++++|+..|+++++.+|++..+++.+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 355666666666666666666666666666666666666553
No 179
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.12 E-value=2.6e-05 Score=68.83 Aligned_cols=103 Identities=21% Similarity=0.228 Sum_probs=80.4
Q ss_pred hhHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC------
Q 023518 2 ATDLEKKAKEAFID-DYFELAYDLYSQAIEISPN--S----AELFADRAQASIKLQNFTEAVADANRAIELEPS------ 68 (281)
Q Consensus 2 a~~l~~~g~~~~~~-~~y~~Al~~y~~al~~~p~--~----~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~------ 68 (281)
|..+...|..+... +++++|+++|.+|++.... . ...+...|.++.++++|++|+..|+++....-.
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence 44566778888888 8999999999999998322 2 467889999999999999999999999875422
Q ss_pred cH-HHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCCh
Q 023518 69 MS-KAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104 (281)
Q Consensus 69 ~~-~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~ 104 (281)
.. ..++..++|++..|++..|...|++....+|+-.
T Consensus 194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 194 SAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 12 3557788999999999999999999999988543
No 180
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.12 E-value=2.1e-05 Score=64.66 Aligned_cols=68 Identities=28% Similarity=0.388 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHH
Q 023518 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKA 72 (281)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a 72 (281)
+.++|-++++.+.++.|+...+++|+++|....++.+||.+|.++.+|++|+.+|.+.++.+|....+
T Consensus 137 y~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 137 YSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred HhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHH
Confidence 55788899999999999999999999999999999999999999999999999999999999987543
No 181
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.11 E-value=3.7e-05 Score=68.07 Aligned_cols=90 Identities=16% Similarity=0.207 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcH-HHHHHHHHH
Q 023518 17 YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY-ETAKVALEK 95 (281)
Q Consensus 17 ~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~-~~A~~~~~~ 95 (281)
.|.+|.-.|++..+..+.++..+..+|.|++.+|+|++|...+..++..+|.++..+.+++.+...+|+. +.+.+++.+
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 3556666666655555555555556666666666666666666666666666666666666666666655 445555555
Q ss_pred hhhcCCCChhH
Q 023518 96 GASLAPGDSRF 106 (281)
Q Consensus 96 a~~~~p~~~~~ 106 (281)
....+|.++-+
T Consensus 262 L~~~~p~h~~~ 272 (290)
T PF04733_consen 262 LKQSNPNHPLV 272 (290)
T ss_dssp CHHHTTTSHHH
T ss_pred HHHhCCCChHH
Confidence 55556655533
No 182
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=3.7e-05 Score=69.47 Aligned_cols=116 Identities=19% Similarity=0.177 Sum_probs=95.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHH----------------------------------HHHHHHHHcc
Q 023518 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFA----------------------------------DRAQASIKLQ 50 (281)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~----------------------------------~~a~~~~~l~ 50 (281)
+...|..++..|++.+|+..|.++...+|.+....- --+..++..+
T Consensus 235 l~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K 314 (564)
T KOG1174|consen 235 MMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEK 314 (564)
T ss_pred HHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhh
Confidence 456799999999999999999999999998743322 2233334447
Q ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 51 NFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 51 ~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
+|..|+...+++|+.+|.+..++...|.++..+|+.++|..+|+.|..+.|.+-.....+-.++-..+..
T Consensus 315 ~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 315 KFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchH
Confidence 8899999999999999999999999999999999999999999999999998877766666665544443
No 183
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=98.10 E-value=1.9e-05 Score=57.64 Aligned_cols=76 Identities=16% Similarity=0.210 Sum_probs=64.2
Q ss_pred CcccccCCCeEEEEEEecCCCCcceEEEEeee-EEEEEEEcC-----C----------CceeeeccccccccccCcceEE
Q 023518 175 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQ-ILSVSIDVP-----G----------EEAYHFQPRLFGKIIPAKCRYE 238 (281)
Q Consensus 175 r~~w~Qt~~~V~i~v~~k~~~~~~~~v~~~~~-~l~~~~~~~-----~----------~~~~~~~~~L~~~I~~~~s~~~ 238 (281)
|++|+.+++.+.|.+.+.|+.++++.|.+..+ .|+|+-... . ...|.-.+.|...|+++.-+.+
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~ 80 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF 80 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEE
Confidence 68999999999999999999999999999875 788885321 1 1146677789999999988999
Q ss_pred EeCcEEEEEEee
Q 023518 239 VLSTKVEIRLAK 250 (281)
Q Consensus 239 v~~~kiei~L~K 250 (281)
..++-++|+|.|
T Consensus 81 ~~nGvL~I~lPK 92 (92)
T cd06472 81 LENGVLTVTVPK 92 (92)
T ss_pred EECCEEEEEecC
Confidence 999999999976
No 184
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.05 E-value=1.6e-05 Score=78.39 Aligned_cols=114 Identities=15% Similarity=0.062 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~ 83 (281)
.+..+|..+.+.+++-+|+..|+.+++.+|.+...|..+|.+|...|+|.-|+..|++|..++|.+.-+.|..+.....+
T Consensus 564 nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~ 643 (1238)
T KOG1127|consen 564 NWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDN 643 (1238)
T ss_pred hhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHh
Confidence 34557888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 023518 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (281)
Q Consensus 84 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l 117 (281)
|+|.+|+..+...+........+...+..+.-++
T Consensus 644 GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~ 677 (1238)
T KOG1127|consen 644 GKYKEALDALGLIIYAFSLERTGQNGLAESVIRD 677 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 9999999998887766544444444444444433
No 185
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.05 E-value=5.9e-05 Score=66.81 Aligned_cols=114 Identities=16% Similarity=0.098 Sum_probs=87.9
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 023518 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ--NFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~--~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~ 83 (281)
.-....+...++++.|.+.+...-+.+.++....+.-|.+.+..| ++.+|.-.|+......+..+..+..++.|+..+
T Consensus 135 al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~ 214 (290)
T PF04733_consen 135 ALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQL 214 (290)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh
Confidence 335667889999999999999988887775555555555555555 699999999998887788889999999999999
Q ss_pred hcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHh
Q 023518 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (281)
Q Consensus 84 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~ 119 (281)
|+|++|...+++++..+|+++.+...+.-|...+++
T Consensus 215 ~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk 250 (290)
T PF04733_consen 215 GHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGK 250 (290)
T ss_dssp T-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999887777666555444
No 186
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.03 E-value=7.6e-06 Score=47.81 Aligned_cols=32 Identities=28% Similarity=0.505 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCC
Q 023518 71 KAYWRKATACMKLEEYETAKVALEKGASLAPG 102 (281)
Q Consensus 71 ~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~ 102 (281)
.+|+++|.+|+.+|+|++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 187
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.03 E-value=0.00019 Score=56.58 Aligned_cols=95 Identities=21% Similarity=0.194 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC----------------------HHHHHHHHHHHHHccCHHHHHHHHHH
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----------------------AELFADRAQASIKLQNFTEAVADANR 61 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~----------------------~~~~~~~a~~~~~l~~~~~A~~~~~~ 61 (281)
.+...|......++...++..+.+++.+...+ ..++..++..+...|++++|+..+.+
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 34556777788889999999999999984332 34466677788889999999999999
Q ss_pred HHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhh
Q 023518 62 AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGAS 98 (281)
Q Consensus 62 al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~ 98 (281)
++.++|.+-.+|..+-.+|...|++..|+..|+++.+
T Consensus 88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988754
No 188
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.03 E-value=5.5e-05 Score=66.00 Aligned_cols=84 Identities=10% Similarity=-0.012 Sum_probs=70.0
Q ss_pred HHHHHHHHHHH-HHccCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChh---HHH
Q 023518 36 AELFADRAQAS-IKLQNFTEAVADANRAIELEPSM---SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR---FTN 108 (281)
Q Consensus 36 ~~~~~~~a~~~-~~l~~~~~A~~~~~~al~l~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~---~~~ 108 (281)
....+..|..+ ++.|+|++|+..|+..+...|+. +.++|.+|.+|+..|+|++|+..|++++..+|+++. +..
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 46678888887 56799999999999999999987 589999999999999999999999999999988654 444
Q ss_pred HHHHHHHHHHh
Q 023518 109 LIKECEERIAE 119 (281)
Q Consensus 109 ~l~~~~~~l~~ 119 (281)
.++.+...+++
T Consensus 222 klg~~~~~~g~ 232 (263)
T PRK10803 222 KVGVIMQDKGD 232 (263)
T ss_pred HHHHHHHHcCC
Confidence 45556554444
No 189
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.03 E-value=6.1e-05 Score=71.38 Aligned_cols=87 Identities=22% Similarity=0.314 Sum_probs=42.9
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHH
Q 023518 12 AFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKV 91 (281)
Q Consensus 12 ~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~ 91 (281)
+-..++|++|+.+|+.|++.+++|..+|..++.....+++|+.....-.+.+++.|..-..|+..++++..+|+|..|..
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555555555555554444444455555444455555555555555555554
Q ss_pred HHHHhhh
Q 023518 92 ALEKGAS 98 (281)
Q Consensus 92 ~~~~a~~ 98 (281)
.++...+
T Consensus 165 il~ef~~ 171 (700)
T KOG1156|consen 165 ILEEFEK 171 (700)
T ss_pred HHHHHHH
Confidence 4444333
No 190
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.03 E-value=0.00016 Score=68.89 Aligned_cols=70 Identities=21% Similarity=0.208 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChh
Q 023518 36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR 105 (281)
Q Consensus 36 ~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 105 (281)
.++++.+|+.|..+|++++|+..+++||...|...+.|+.+|.+|-+.|++.+|..+++.|..+|..|.-
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRy 263 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRY 263 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHH
Confidence 4677899999999999999999999999999999999999999999999999999999999999998765
No 191
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.01 E-value=5.3e-06 Score=48.75 Aligned_cols=32 Identities=34% Similarity=0.483 Sum_probs=19.5
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHH
Q 023518 59 ANRAIELEPSMSKAYWRKATACMKLEEYETAK 90 (281)
Q Consensus 59 ~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~ 90 (281)
|++||+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45566666666666666666666666666554
No 192
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.00 E-value=1.4e-05 Score=46.52 Aligned_cols=33 Identities=30% Similarity=0.460 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCC
Q 023518 71 KAYWRKATACMKLEEYETAKVALEKGASLAPGD 103 (281)
Q Consensus 71 ~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~ 103 (281)
.+++.+|.+++.+|+|++|+.+|+++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456667777777777777777777777766654
No 193
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.00 E-value=1e-05 Score=71.44 Aligned_cols=82 Identities=17% Similarity=0.176 Sum_probs=69.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHH
Q 023518 39 FADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (281)
Q Consensus 39 ~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~ 118 (281)
+-.+|+-|+++|+|++|+.||.+++.++|.++..+.+++.+|++++.|..|...+..|+.++.....+....+.+...|+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 46689999999999999999999999999999999999999999999999999999999998655444444444444444
Q ss_pred hh
Q 023518 119 EE 120 (281)
Q Consensus 119 ~~ 120 (281)
..
T Consensus 180 ~~ 181 (536)
T KOG4648|consen 180 NN 181 (536)
T ss_pred hH
Confidence 43
No 194
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=3.8e-05 Score=61.02 Aligned_cols=81 Identities=16% Similarity=0.198 Sum_probs=71.3
Q ss_pred CCCcccccCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcCC---------------CceeeeccccccccccCcceE
Q 023518 173 KYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG---------------EEAYHFQPRLFGKIIPAKCRY 237 (281)
Q Consensus 173 k~r~~w~Qt~~~V~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~~---------------~~~~~~~~~L~~~I~~~~s~~ 237 (281)
.+.|+++++++.+.|++-+.|+.++++.|++.++.|+|+....+ ...|.-.+.|...|+++..+.
T Consensus 40 ~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~~A 119 (146)
T COG0071 40 TPPVDIEETDDEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVIKA 119 (146)
T ss_pred CCcEEEEEcCCEEEEEEEcCCCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccceee
Confidence 34799999999999999999999999999999999999976543 124777889999999998899
Q ss_pred EEeCcEEEEEEeecCC
Q 023518 238 EVLSTKVEIRLAKAEP 253 (281)
Q Consensus 238 ~v~~~kiei~L~K~~~ 253 (281)
+..++-+.|+|.|.++
T Consensus 120 ~~~nGvL~I~lpk~~~ 135 (146)
T COG0071 120 KYKNGLLTVTLPKAEP 135 (146)
T ss_pred EeeCcEEEEEEecccc
Confidence 9999999999999765
No 195
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.97 E-value=1.7e-05 Score=46.25 Aligned_cols=33 Identities=30% Similarity=0.499 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc
Q 023518 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSM 69 (281)
Q Consensus 37 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 69 (281)
.+|+++|.+|..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 467777777777777777777777777777753
No 196
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=0.00033 Score=60.97 Aligned_cols=97 Identities=21% Similarity=0.104 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHH-----------------------
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN----------------------- 60 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~----------------------- 60 (281)
..+.++..+...+++.+|...|..++...|++.++...++.||+..|+.+.|...+.
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~q 215 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQ 215 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence 456778899999999999999999999999999999999999999999877633322
Q ss_pred -----------HHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcC
Q 023518 61 -----------RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLA 100 (281)
Q Consensus 61 -----------~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~ 100 (281)
+.+..+|++..+.+.+|..|...|++++|...+-..++.+
T Consensus 216 aa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 216 AAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred HhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 2233468899999999999999999999999887777764
No 197
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.92 E-value=2.1e-05 Score=48.97 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHH
Q 023518 71 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE 112 (281)
Q Consensus 71 ~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 112 (281)
.+++.+|.+|..+|++++|...|+++++.+|++..++..+..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 578999999999999999999999999999999998877654
No 198
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.91 E-value=1.1e-05 Score=47.31 Aligned_cols=33 Identities=33% Similarity=0.615 Sum_probs=31.3
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 023518 24 LYSQAIEISPNSAELFADRAQASIKLQNFTEAV 56 (281)
Q Consensus 24 ~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~ 56 (281)
+|+++|+++|+++.+|.++|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 488999999999999999999999999999986
No 199
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.00012 Score=65.10 Aligned_cols=87 Identities=16% Similarity=0.121 Sum_probs=75.3
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHH
Q 023518 10 KEAFIDDYFELAYDLYSQAIEISPNSA-ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET 88 (281)
Q Consensus 10 ~~~~~~~~y~~Al~~y~~al~~~p~~~-~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~ 88 (281)
..+....||..|+.+++-.+..+.... ....-+|.|++++|+|++|+..|..+..-+--+++.+.+++.|++.+|.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 356678899999999998887754443 5667789999999999999999999998777788999999999999999999
Q ss_pred HHHHHHHh
Q 023518 89 AKVALEKG 96 (281)
Q Consensus 89 A~~~~~~a 96 (281)
|.....++
T Consensus 110 A~~~~~ka 117 (557)
T KOG3785|consen 110 AKSIAEKA 117 (557)
T ss_pred HHHHHhhC
Confidence 99877665
No 200
>KOG4379 consensus Uncharacterized conserved protein (tumor antigen CML66 in humans) [Function unknown]
Probab=97.91 E-value=1.8e-05 Score=71.64 Aligned_cols=85 Identities=15% Similarity=0.235 Sum_probs=72.0
Q ss_pred CCcccccCCCeEEEEEEecC-CCCcceEEEEeeeEEEEEEEcCCCceeeeccccccccccCcceEEEeC-cEEEEEEeec
Q 023518 174 YRHEFYQKPEEVVVTVFAKG-IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLS-TKVEIRLAKA 251 (281)
Q Consensus 174 ~r~~w~Qt~~~V~i~v~~k~-~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~L~~~I~~~~s~~~v~~-~kiei~L~K~ 251 (281)
.-|.|.||.+.|.|++.+.. ...+++.|.+..+.+-+.+. ..-.|+..||..|.-+.|.|.|.. .++|+.|.|+
T Consensus 290 p~y~w~qt~d~~~~~~~~p~~~~~~~i~Iq~~~~~v~v~~~----dh~~~~g~lyasv~he~s~~ii~ean~Le~sl~K~ 365 (596)
T KOG4379|consen 290 PSYSWSQTDDNVLIRFNVPSTASAKEINIQGSKTTVVVKHL----DHVIFDGELYASVGHELSAFIIAEANGLELSLTKA 365 (596)
T ss_pred ccceeeeccCcceEEEecccccccceEEEEecCceEEEEee----eeEEeccchhhhccccchhhhhhhhccceEEEeec
Confidence 36999999999999998765 55688899999888887763 345689999999999999999988 6999999999
Q ss_pred CC-CCCCccccC
Q 023518 252 EP-IQWSSLEFS 262 (281)
Q Consensus 252 ~~-~~W~~l~~~ 262 (281)
+. ..|++|-..
T Consensus 366 de~~twprL~~~ 377 (596)
T KOG4379|consen 366 DEIQTWPRLFAQ 377 (596)
T ss_pred ccccccchheee
Confidence 55 899999643
No 201
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=0.00025 Score=66.71 Aligned_cols=100 Identities=19% Similarity=0.202 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHH---------------------------------HHHHHHHHHHcc
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAEL---------------------------------FADRAQASIKLQ 50 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~---------------------------------~~~~a~~~~~l~ 50 (281)
.++..-+.+...++|++|+....+.+...|++.++ .+.+|.|+++++
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcc
Confidence 45566666677777777777777777777766433 246777777777
Q ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhH
Q 023518 51 NFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF 106 (281)
Q Consensus 51 ~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 106 (281)
+.++|+.+++ .+++.+......+|+.+|++|+|++|...|+...+.+..+.+.
T Consensus 94 k~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~ 146 (652)
T KOG2376|consen 94 KLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDE 146 (652)
T ss_pred cHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHH
Confidence 7777777776 4556666788889999999999999999999998877665543
No 202
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.87 E-value=7.7e-05 Score=48.35 Aligned_cols=49 Identities=22% Similarity=0.312 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHh
Q 023518 71 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (281)
Q Consensus 71 ~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~ 119 (281)
+.+|.+|++++++|+|.+|+.+.+.+++++|+|.++......++.++.+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k 50 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK 50 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence 4678899999999999999999999999999999999888888887765
No 203
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.00034 Score=61.08 Aligned_cols=110 Identities=18% Similarity=0.143 Sum_probs=93.3
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHH
Q 023518 11 EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAK 90 (281)
Q Consensus 11 ~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~ 90 (281)
.+.++.+|.+||+++..-.+.+|.+...+..+|.||+...+|.+|-.+|++.-.+.|......+..++.+++.+.|.+|+
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHHHHHhhhCcC
Q 023518 91 VALEKGASLAPGDSRFTNLIKECEERIAEETGEL 124 (281)
Q Consensus 91 ~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~~~~~ 124 (281)
+...... +++.+....-+++..++-..++.
T Consensus 99 rV~~~~~----D~~~L~~~~lqLqaAIkYse~Dl 128 (459)
T KOG4340|consen 99 RVAFLLL----DNPALHSRVLQLQAAIKYSEGDL 128 (459)
T ss_pred HHHHHhc----CCHHHHHHHHHHHHHHhcccccC
Confidence 8765543 33556666666666666554443
No 204
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.83 E-value=0.00071 Score=51.08 Aligned_cols=94 Identities=23% Similarity=0.209 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------------HHHHHHHHHHHHHccCHHHHHHHHHHHHH-------c
Q 023518 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS------------AELFADRAQASIKLQNFTEAVADANRAIE-------L 65 (281)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~------------~~~~~~~a~~~~~l~~~~~A~~~~~~al~-------l 65 (281)
....|...+..+-|++|..-|+++++..-+- +..+..++.++..+|+|++++...+++|. +
T Consensus 12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL 91 (144)
T PF12968_consen 12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL 91 (144)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence 3566778889999999999999999874321 44577789999999999999999999985 3
Q ss_pred CCCc----HHHHHHHHHHHHHhhcHHHHHHHHHHhhh
Q 023518 66 EPSM----SKAYWRKATACMKLEEYETAKVALEKGAS 98 (281)
Q Consensus 66 ~p~~----~~a~~~~g~~~~~~g~~~~A~~~~~~a~~ 98 (281)
+.+. ..+-+.+|+++..+|+.++|+..|+.+-+
T Consensus 92 ~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 92 HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 4443 44668899999999999999999988754
No 205
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.80 E-value=0.0002 Score=56.06 Aligned_cols=72 Identities=24% Similarity=0.224 Sum_probs=66.1
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhH
Q 023518 35 SAELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF 106 (281)
Q Consensus 35 ~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 106 (281)
.+..++..|...+..|+|.+|+..++.+....|.. ..+.+.+|.+|+..++|++|+..+++-++++|.++.+
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 36678999999999999999999999999988753 6799999999999999999999999999999999864
No 206
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.80 E-value=5.9e-05 Score=43.76 Aligned_cols=32 Identities=34% Similarity=0.487 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC
Q 023518 37 ELFADRAQASIKLQNFTEAVADANRAIELEPS 68 (281)
Q Consensus 37 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~ 68 (281)
.+++.+|.++..+|+|++|+.++++++.++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 35556666666666666666666666666654
No 207
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=97.79 E-value=0.00012 Score=52.30 Aligned_cols=74 Identities=19% Similarity=0.284 Sum_probs=64.3
Q ss_pred ccccCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcCC--------------CceeeeccccccccccCcceEEEeCc
Q 023518 177 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG--------------EEAYHFQPRLFGKIIPAKCRYEVLST 242 (281)
Q Consensus 177 ~w~Qt~~~V~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~~--------------~~~~~~~~~L~~~I~~~~s~~~v~~~ 242 (281)
+++++++.+.|.|-+.|+.++++.|.+.++.|.|+..... ...|.-.+.|...|+++..+..+.++
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~G 80 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLENG 80 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeCC
Confidence 4788999999999999999999999999999999843321 34688888999999999999999999
Q ss_pred EEEEEEee
Q 023518 243 KVEIRLAK 250 (281)
Q Consensus 243 kiei~L~K 250 (281)
.++|++.|
T Consensus 81 ~L~I~~pk 88 (88)
T cd06464 81 VLTITLPK 88 (88)
T ss_pred EEEEEEcC
Confidence 99999876
No 208
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=0.00018 Score=64.09 Aligned_cols=113 Identities=18% Similarity=0.117 Sum_probs=91.2
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH--------------HcCC------
Q 023518 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAI--------------ELEP------ 67 (281)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al--------------~l~p------ 67 (281)
.|.++|..|||++|+..|+-+...+.-+..++.++|.|++-+|.|.+|.....+|- +++-
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~ 142 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILT 142 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHH
Confidence 57889999999999999999998777778999999999999999999977665542 2221
Q ss_pred ------CcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 68 ------SMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 68 ------~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
+..+-.+.++..++-+-.|.+|+..|.+.+.-+|+-..+...++-|..++.-.
T Consensus 143 fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYy 201 (557)
T KOG3785|consen 143 FHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYY 201 (557)
T ss_pred HHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchh
Confidence 12345566777788888899999999999999988888888888887766544
No 209
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=97.78 E-value=0.00012 Score=53.30 Aligned_cols=75 Identities=13% Similarity=0.216 Sum_probs=61.1
Q ss_pred CcccccCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcCC--------C---------ceeeeccccccccccCcceE
Q 023518 175 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG--------E---------EAYHFQPRLFGKIIPAKCRY 237 (281)
Q Consensus 175 r~~w~Qt~~~V~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~~--------~---------~~~~~~~~L~~~I~~~~s~~ 237 (281)
+.+|+++++.+.|.+.+.|+.+++++|++..+.|.|+..... + ..|.-.+.|. .|+++..+.
T Consensus 2 ~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~A 80 (93)
T cd06471 2 KTDIKETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIKA 80 (93)
T ss_pred ceeEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHCEE
Confidence 689999999999999999999999999999999999753321 0 0234345564 799998999
Q ss_pred EEeCcEEEEEEee
Q 023518 238 EVLSTKVEIRLAK 250 (281)
Q Consensus 238 ~v~~~kiei~L~K 250 (281)
++.++.+.|+|.|
T Consensus 81 ~~~dGvL~I~lPK 93 (93)
T cd06471 81 KYENGVLKITLPK 93 (93)
T ss_pred EEECCEEEEEEcC
Confidence 9999999999976
No 210
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.77 E-value=0.00023 Score=61.37 Aligned_cols=82 Identities=16% Similarity=0.159 Sum_probs=71.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhH---HHHHHH
Q 023518 39 FADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF---TNLIKE 112 (281)
Q Consensus 39 ~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~---~~~l~~ 112 (281)
+|+-|.-+++.|+|..|...|..-+...|+. +.++|.+|.++|.+|+|++|...|..+.+-.|.++.+ ..-++.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7999999999999999999999999999875 7899999999999999999999999999999887755 444555
Q ss_pred HHHHHHhh
Q 023518 113 CEERIAEE 120 (281)
Q Consensus 113 ~~~~l~~~ 120 (281)
|..++++.
T Consensus 224 ~~~~l~~~ 231 (262)
T COG1729 224 SLGRLGNT 231 (262)
T ss_pred HHHHhcCH
Confidence 55555544
No 211
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=97.76 E-value=0.00018 Score=53.33 Aligned_cols=77 Identities=16% Similarity=0.251 Sum_probs=61.1
Q ss_pred ccccCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcC----CC---------ceeeeccccccccccCcceEEEeCcE
Q 023518 177 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP----GE---------EAYHFQPRLFGKIIPAKCRYEVLSTK 243 (281)
Q Consensus 177 ~w~Qt~~~V~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~----~~---------~~~~~~~~L~~~I~~~~s~~~v~~~k 243 (281)
||+++++.+.|.+-+.|+.+++++|.+.++.|.|+.... ++ ..|.-.+.|...|+++..+.++.++.
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~Gv 80 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYENGV 80 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETTSE
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecCCE
Confidence 689999999999999999999999999999998885332 11 24666778999999999999999999
Q ss_pred EEEEEeecCC
Q 023518 244 VEIRLAKAEP 253 (281)
Q Consensus 244 iei~L~K~~~ 253 (281)
+.|++.|...
T Consensus 81 L~I~~pk~~~ 90 (102)
T PF00011_consen 81 LTITIPKKEE 90 (102)
T ss_dssp EEEEEEBSSS
T ss_pred EEEEEEcccc
Confidence 9999999764
No 212
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.00071 Score=63.75 Aligned_cols=90 Identities=18% Similarity=0.156 Sum_probs=77.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC------------------
Q 023518 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP------------------ 67 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p------------------ 67 (281)
|.++-++|+.+..++|+..++ -.++.+..++..+|+.++++++|++|+..|+..++-+.
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 689999999999999999999 35566677889999999999999999999998865432
Q ss_pred -------------CcHHHHHHHHHHHHHhhcHHHHHHHHHHhhh
Q 023518 68 -------------SMSKAYWRKATACMKLEEYETAKVALEKGAS 98 (281)
Q Consensus 68 -------------~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~ 98 (281)
+....+|+.+.++...|+|.+|++.++++++
T Consensus 160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~ 203 (652)
T KOG2376|consen 160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALR 203 (652)
T ss_pred hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 1356789999999999999999999999943
No 213
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.73 E-value=0.00013 Score=64.32 Aligned_cols=98 Identities=23% Similarity=0.188 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC------CcH
Q 023518 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISP--NS----AELFADRAQASIKLQNFTEAVADANRAIELEP------SMS 70 (281)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p--~~----~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p------~~~ 70 (281)
+.+...|+.+-..++|++|.+.|.++.+..- ++ +..|...+.+|.+. ++.+|+..+++|+.+.- .-+
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA 114 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAA 114 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 3455567777789999999999999977632 11 45677778887666 99999999999998642 126
Q ss_pred HHHHHHHHHHHHh-hcHHHHHHHHHHhhhcCC
Q 023518 71 KAYWRKATACMKL-EEYETAKVALEKGASLAP 101 (281)
Q Consensus 71 ~a~~~~g~~~~~~-g~~~~A~~~~~~a~~~~p 101 (281)
.++..+|.+|... |++++|+.+|++|..+..
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~ 146 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYE 146 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 6888999999999 999999999999998743
No 214
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.69 E-value=0.00024 Score=67.81 Aligned_cols=67 Identities=18% Similarity=0.098 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHH
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSK 71 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 71 (281)
.+...|..+...|++++|...|++|+.++| +..+|..+|.++...|++++|++.|.+|++++|.++.
T Consensus 422 ~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 422 IYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 345567777789999999999999999999 5889999999999999999999999999999999875
No 215
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=0.0002 Score=62.40 Aligned_cols=63 Identities=16% Similarity=0.156 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Q 023518 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL 65 (281)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 65 (281)
+.+++.|..+|+.|+|+.|++.|+.|++...-++.+-++.|.||++.++|..|+......++.
T Consensus 145 d~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 145 DGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred chhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 345556666666666666666666666666666666666666666666666666665555543
No 216
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.62 E-value=3.8e-05 Score=69.42 Aligned_cols=97 Identities=13% Similarity=0.173 Sum_probs=77.3
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcC----CC--cH
Q 023518 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELE----PS--MS 70 (281)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~------~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~----p~--~~ 70 (281)
..+-+.|+.||-.|+|+.|+..-..-|.+.... -.++.++|+||+-+|+|+.|++.|.+++.+. .. -+
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 345667888999999999999887777663222 3578999999999999999999999877654 22 24
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhhhc
Q 023518 71 KAYWRKATACMKLEEYETAKVALEKGASL 99 (281)
Q Consensus 71 ~a~~~~g~~~~~~g~~~~A~~~~~~a~~~ 99 (281)
..-|.+|..|.-+.+|++|+.++++-+.+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaI 304 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAI 304 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 56688999999999999999998876654
No 217
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.59 E-value=0.00017 Score=66.55 Aligned_cols=115 Identities=13% Similarity=0.081 Sum_probs=93.7
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHH-HhcCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHH---------
Q 023518 3 TDLEKKAKEAFIDDYFELAYDLYSQA-IEISPN--------SAELFADRAQASIKLQNFTEAVADANRAIE--------- 64 (281)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~a-l~~~p~--------~~~~~~~~a~~~~~l~~~~~A~~~~~~al~--------- 64 (281)
..++-+++..|..|+|..|.+++... +...+. .-.++.++|.+++.++.|..+.-.|.+|++
T Consensus 241 ~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g 320 (696)
T KOG2471|consen 241 MALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNG 320 (696)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 45677899999999999999988764 222332 134578899999999999999999999996
Q ss_pred cCC---------CcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 023518 65 LEP---------SMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (281)
Q Consensus 65 l~p---------~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l 117 (281)
+.| ......|+.|+.|.+.|+.-.|.+||.++....-.++.+|..++.|--.-
T Consensus 321 ~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 321 LKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred CCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 111 24678999999999999999999999999999999999888888775433
No 218
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.58 E-value=0.0018 Score=63.77 Aligned_cols=99 Identities=13% Similarity=0.059 Sum_probs=87.3
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHH
Q 023518 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE 87 (281)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~ 87 (281)
---.....++|..|+....+.++..|+..-+....|..+.++|++++|..+++..-...+++-..+-.+-.+|..+|+++
T Consensus 15 pi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 15 PIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhh
Confidence 34456778899999999999999999999999999999999999999998888777788888778888899999999999
Q ss_pred HHHHHHHHhhhcCCCChhHH
Q 023518 88 TAKVALEKGASLAPGDSRFT 107 (281)
Q Consensus 88 ~A~~~~~~a~~~~p~~~~~~ 107 (281)
+|..+|+++...+|+ ....
T Consensus 95 ~~~~~Ye~~~~~~P~-eell 113 (932)
T KOG2053|consen 95 EAVHLYERANQKYPS-EELL 113 (932)
T ss_pred HHHHHHHHHHhhCCc-HHHH
Confidence 999999999999998 4443
No 219
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.57 E-value=0.0029 Score=57.05 Aligned_cols=117 Identities=14% Similarity=0.101 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHH
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS-MSKAYWRKATACMK 82 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~-~~~a~~~~g~~~~~ 82 (281)
.....|..-+..|+|..|.++..++-+..+.....|..-|.+...+|+++.|-.+..++-++.++ ...+...++..+..
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 34456667777888888888888887777777777777788888888888888888888877443 35567778888888
Q ss_pred hhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 83 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
.|+|..|.....++++..|.++.+.....+++-.++.-
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~ 203 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAW 203 (400)
T ss_pred CCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccH
Confidence 88888888888888888888887777777766655554
No 220
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=97.56 E-value=0.0021 Score=49.70 Aligned_cols=86 Identities=16% Similarity=0.230 Sum_probs=73.9
Q ss_pred CHHHHHHHHHHHHHcc---CHHHHHHHHHHHHH-cCCC-cHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHH
Q 023518 35 SAELFADRAQASIKLQ---NFTEAVADANRAIE-LEPS-MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNL 109 (281)
Q Consensus 35 ~~~~~~~~a~~~~~l~---~~~~A~~~~~~al~-l~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 109 (281)
.....+++|.++.+.. +..+.+..++..++ -.|. .-+..|.++..++++|+|+.|+.++...++.+|+|.++...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 3567889999999875 46778888888886 4443 46788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 023518 110 IKECEERIAEE 120 (281)
Q Consensus 110 l~~~~~~l~~~ 120 (281)
...++.++.+.
T Consensus 111 k~~ied~itke 121 (149)
T KOG3364|consen 111 KETIEDKITKE 121 (149)
T ss_pred HHHHHHHHhhc
Confidence 99998888776
No 221
>PRK10941 hypothetical protein; Provisional
Probab=97.56 E-value=0.00077 Score=58.91 Aligned_cols=78 Identities=12% Similarity=0.099 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHH
Q 023518 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE 114 (281)
Q Consensus 37 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 114 (281)
..+.++=.+|+..++++.|+.+.++.+.++|+++.-+.-+|.+|.++|++..|...++..++..|+++........+.
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 456677788899999999999999999999999999999999999999999999999999999999997655544443
No 222
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.56 E-value=0.0038 Score=50.25 Aligned_cols=98 Identities=27% Similarity=0.277 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHccCHHHHHHHHHHHHHcCC---CcHHHHHHHHHHH
Q 023518 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQ-ASIKLQNFTEAVADANRAIELEP---SMSKAYWRKATAC 80 (281)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~-~~~~l~~~~~A~~~~~~al~l~p---~~~~a~~~~g~~~ 80 (281)
+...|......++|..++..+..++...+.+.......+. ++...+++..|+..+.+++..++ .....++.++..+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (291)
T COG0457 98 LLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALL 177 (291)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHH
Confidence 3445555555666666666666666655554333444444 56666666666666666655554 2344445555555
Q ss_pred HHhhcHHHHHHHHHHhhhcCCC
Q 023518 81 MKLEEYETAKVALEKGASLAPG 102 (281)
Q Consensus 81 ~~~g~~~~A~~~~~~a~~~~p~ 102 (281)
...++++.|...+.+++...+.
T Consensus 178 ~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 178 EALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred HHhcCHHHHHHHHHHHHhhCcc
Confidence 5666666666666666666655
No 223
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.00012 Score=65.04 Aligned_cols=117 Identities=21% Similarity=0.264 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-----------C--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISP-----------N--------SAELFADRAQASIKLQNFTEAVADANRAIE 64 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p-----------~--------~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 64 (281)
...+.|+..++.++|..|..-|.++++.-. + -...+.+.+.|.++++.+..|+....-+++
T Consensus 224 ~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~ 303 (372)
T KOG0546|consen 224 KKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALR 303 (372)
T ss_pred hhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccc
Confidence 345678889999999999999999987622 1 023566788999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 65 LEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 65 l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
.++...+++|+++.++..+.++++|+..+..+....|++..+...+........+.
T Consensus 304 ~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~ 359 (372)
T KOG0546|consen 304 DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQY 359 (372)
T ss_pred cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHH
Confidence 99999999999999999999999999999999999999998877777666555544
No 224
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.51 E-value=0.00095 Score=54.20 Aligned_cols=69 Identities=20% Similarity=0.239 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHHHh----------cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC-----------HHHHHHHHH
Q 023518 2 ATDLEKKAKEAFID----------DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQN-----------FTEAVADAN 60 (281)
Q Consensus 2 a~~l~~~g~~~~~~----------~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~-----------~~~A~~~~~ 60 (281)
++.+.+-|.++... .-+++|+..|++||.++|+..++++.+|++|..++. |++|..+|+
T Consensus 25 adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~Fq 104 (186)
T PF06552_consen 25 ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQ 104 (186)
T ss_dssp HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Confidence 34555556555443 457889999999999999999999999999998743 888899999
Q ss_pred HHHHcCCCcH
Q 023518 61 RAIELEPSMS 70 (281)
Q Consensus 61 ~al~l~p~~~ 70 (281)
+|+..+|.+.
T Consensus 105 kAv~~~P~ne 114 (186)
T PF06552_consen 105 KAVDEDPNNE 114 (186)
T ss_dssp HHHHH-TT-H
T ss_pred HHHhcCCCcH
Confidence 9999999884
No 225
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.51 E-value=0.0022 Score=52.70 Aligned_cols=98 Identities=13% Similarity=0.035 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~---~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~ 80 (281)
.....+..++..+++++|+..++.++....+. ..+-.++|.+.+.+|++++|+..++....-+- .+...-.+|.++
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDil 169 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDIL 169 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHH
Confidence 34677889999999999999999999764443 45677899999999999999887665443222 233456799999
Q ss_pred HHhhcHHHHHHHHHHhhhcCCC
Q 023518 81 MKLEEYETAKVALEKGASLAPG 102 (281)
Q Consensus 81 ~~~g~~~~A~~~~~~a~~~~p~ 102 (281)
...|+-++|+..|.+++..+++
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 170 LAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHcCchHHHHHHHHHHHHccCC
Confidence 9999999999999999999843
No 226
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.44 E-value=0.0035 Score=55.25 Aligned_cols=101 Identities=14% Similarity=0.085 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIK-LQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~-l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (281)
.|+...+..-+.+..+.|...|.+|++...-...+|...|..-+. .++...|...|+++++..|.+...|.....-+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 456667777777788999999999987666677888888888666 4566669999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhhcCCCCh
Q 023518 83 LEEYETAKVALEKGASLAPGDS 104 (281)
Q Consensus 83 ~g~~~~A~~~~~~a~~~~p~~~ 104 (281)
+++.+.|+..|++++..-+.+.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~ 104 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEK 104 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHH
T ss_pred hCcHHHHHHHHHHHHHhcCchh
Confidence 9999999999999998877665
No 227
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.0015 Score=62.18 Aligned_cols=96 Identities=18% Similarity=0.136 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~------~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g 77 (281)
-+++.|..+|+.++|..+++.|...++..|.+ +....+++.||+++.+.+.|++.+..|-+.+|.++-..+...
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 46788999999999999999999999987776 456788999999999999999999999999999999999999
Q ss_pred HHHHHhhcHHHHHHHHHHhhhc
Q 023518 78 TACMKLEEYETAKVALEKGASL 99 (281)
Q Consensus 78 ~~~~~~g~~~~A~~~~~~a~~~ 99 (281)
.+...-|.-++|+.+.......
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHhh
Confidence 9999999999999998877654
No 228
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.40 E-value=0.0011 Score=55.57 Aligned_cols=70 Identities=16% Similarity=0.143 Sum_probs=66.3
Q ss_pred ChhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcH
Q 023518 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS 70 (281)
Q Consensus 1 ma~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 70 (281)
|++.+.-.|.-+...|+|+.|.+.|+..++++|..--+..+||.+++--|+|..|.+++.+-.+.+|+++
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence 6778888899999999999999999999999999999999999999999999999999999999999885
No 229
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.37 E-value=0.0031 Score=47.10 Aligned_cols=93 Identities=22% Similarity=0.238 Sum_probs=78.3
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHcCCCcHHHH
Q 023518 8 KAKEAFIDDYFELAYDLYSQAIEISPNSA---ELFADRAQASIKLQ-----------NFTEAVADANRAIELEPSMSKAY 73 (281)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~~al~~~p~~~---~~~~~~a~~~~~l~-----------~~~~A~~~~~~al~l~p~~~~a~ 73 (281)
+|..++.+||+-+|+++....+..+.++. .++...|.++.++. -.-.++++|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 57889999999999999999999877765 66777888887763 25568999999999999998888
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHhhhcC
Q 023518 74 WRKATACMKLEEYETAKVALEKGASLA 100 (281)
Q Consensus 74 ~~~g~~~~~~g~~~~A~~~~~~a~~~~ 100 (281)
|.+|.-+-....|+++..-.++++...
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 888888888888888888888887653
No 230
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0028 Score=53.98 Aligned_cols=71 Identities=23% Similarity=0.301 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHH
Q 023518 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR 75 (281)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~ 75 (281)
+.+...++...++|-++++..+..|..+|.|..+|+.||.++...-+..+|.+|+..+++++|....+-.+
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsr 303 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSR 303 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHH
Confidence 46678889999999999999999999999999999999999999999999999999999999987655443
No 231
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.37 E-value=0.00029 Score=40.81 Aligned_cols=31 Identities=32% Similarity=0.490 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhhhcCC
Q 023518 71 KAYWRKATACMKLEEYETAKVALEKGASLAP 101 (281)
Q Consensus 71 ~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p 101 (281)
.+|+.+|.+|..+|++++|..+|+++++++|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3556666666666666666666666666655
No 232
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.25 E-value=0.0011 Score=58.08 Aligned_cols=75 Identities=21% Similarity=0.262 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 023518 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA 79 (281)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~ 79 (281)
....|....++|+.++|..+|..|+.+.|++++++...|......++.-+|-++|-+|+.++|.+.+++.+++..
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 455677788999999999999999999999999999999999999999999999999999999999988887643
No 233
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.24 E-value=0.0092 Score=47.94 Aligned_cols=93 Identities=27% Similarity=0.370 Sum_probs=77.5
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhhcH
Q 023518 11 EAFIDDYFELAYDLYSQAIEISP---NSAELFADRAQASIKLQNFTEAVADANRAIELEPS-MSKAYWRKATACMKLEEY 86 (281)
Q Consensus 11 ~~~~~~~y~~Al~~y~~al~~~p---~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~-~~~a~~~~g~~~~~~g~~ 86 (281)
.++..++++.|+..|.+++..++ .....+..++..+...+++..|+..+.+++...+. ....+..++.++...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 67888889999999998888766 35666777777778888899999999999888888 688888888888888888
Q ss_pred HHHHHHHHHhhhcCCCC
Q 023518 87 ETAKVALEKGASLAPGD 103 (281)
Q Consensus 87 ~~A~~~~~~a~~~~p~~ 103 (281)
..|...+..++...|..
T Consensus 219 ~~a~~~~~~~~~~~~~~ 235 (291)
T COG0457 219 EEALEYYEKALELDPDN 235 (291)
T ss_pred HHHHHHHHHHHhhCccc
Confidence 99999998888888863
No 234
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.20 E-value=0.023 Score=48.76 Aligned_cols=116 Identities=16% Similarity=0.091 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHc--------cCHHHHHHHHHHHHHcCCCc--
Q 023518 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA---ELFADRAQASIKL--------QNFTEAVADANRAIELEPSM-- 69 (281)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~---~~~~~~a~~~~~l--------~~~~~A~~~~~~al~l~p~~-- 69 (281)
+.++..+-++|+.++|++|+...++-+.+.|+++ -+++.+|.+++.. .-..+|+..++..+..-|+.
T Consensus 72 qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Y 151 (254)
T COG4105 72 QAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRY 151 (254)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcc
Confidence 3577889999999999999999999999988874 4677788888775 23567888899999998863
Q ss_pred -------------HHHH--HHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHH
Q 023518 70 -------------SKAY--WRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (281)
Q Consensus 70 -------------~~a~--~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~ 118 (281)
..+. +..|.-|.+.|.|..|..-++..++-.|+.......+..+.....
T Consensus 152 a~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~ 215 (254)
T COG4105 152 APDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYY 215 (254)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Confidence 1122 335778888999999999999999998877665544444444333
No 235
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.19 E-value=0.0033 Score=57.31 Aligned_cols=91 Identities=19% Similarity=0.285 Sum_probs=77.5
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCC-------------C-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC
Q 023518 6 EKKAKEAFIDDYFELAYDLYSQAIEISPN-------------S-----AELFADRAQASIKLQNFTEAVADANRAIELEP 67 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~~p~-------------~-----~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p 67 (281)
...|..+|+.++|..|+-.|..+|++-.. + ...--.+..||+++++.+.|+....+.|.++|
T Consensus 180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP 259 (569)
T PF15015_consen 180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP 259 (569)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence 45678899999999999999999887321 1 23456789999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhhcHHHHHHHHHHh
Q 023518 68 SMSKAYWRKATACMKLEEYETAKVALEKG 96 (281)
Q Consensus 68 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~a 96 (281)
....-+++.|.|...+.+|.+|-+.+--+
T Consensus 260 ~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 260 SYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998765544
No 236
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.17 E-value=0.00077 Score=38.98 Aligned_cols=32 Identities=25% Similarity=0.435 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC
Q 023518 37 ELFADRAQASIKLQNFTEAVADANRAIELEPS 68 (281)
Q Consensus 37 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~ 68 (281)
.+|+.+|.+|..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35666666666666666666666666666653
No 237
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.00067 Score=57.36 Aligned_cols=78 Identities=15% Similarity=0.292 Sum_probs=67.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHH
Q 023518 39 FADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER 116 (281)
Q Consensus 39 ~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 116 (281)
+-..|.+++.-++|..|+.+|.+||.++|..+..|.+++.||+++++|+.+.....++++++|+.......++.+..+
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~ 90 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ 90 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh
Confidence 344567777788999999999999999999999999999999999999999999999999999877666666555443
No 238
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.0033 Score=54.08 Aligned_cols=99 Identities=15% Similarity=0.128 Sum_probs=84.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhc----C--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 023518 6 EKKAKEAFIDDYFELAYDLYSQAIEI----S--PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA 79 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~----~--p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~ 79 (281)
...|...++.||-+.|-.+|+..-+. + ..+-....+.+.+|...++|.+|...+.+++..|+.++.+.-+.|.|
T Consensus 216 s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALc 295 (366)
T KOG2796|consen 216 SGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALC 295 (366)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHH
Confidence 34688899999999999999844332 2 22345677788888888999999999999999999999999999999
Q ss_pred HHHhhcHHHHHHHHHHhhhcCCCCh
Q 023518 80 CMKLEEYETAKVALEKGASLAPGDS 104 (281)
Q Consensus 80 ~~~~g~~~~A~~~~~~a~~~~p~~~ 104 (281)
+..+|+..+|++.++.++...|...
T Consensus 296 llYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 296 LLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccc
Confidence 9999999999999999999999765
No 239
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.13 E-value=0.00097 Score=38.10 Aligned_cols=31 Identities=26% Similarity=0.339 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhhcCCC
Q 023518 72 AYWRKATACMKLEEYETAKVALEKGASLAPG 102 (281)
Q Consensus 72 a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~ 102 (281)
+++++|.+++.+|++++|...|++.++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5667777777777777777777777776665
No 240
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.013 Score=50.43 Aligned_cols=80 Identities=20% Similarity=0.177 Sum_probs=55.2
Q ss_pred HHHHHHHHHHc----cCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHH
Q 023518 39 FADRAQASIKL----QNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE 114 (281)
Q Consensus 39 ~~~~a~~~~~l----~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 114 (281)
+..+|.+++++ +++.+|.-.|+..-.-.+..+......+.|+..+|+|++|...++.++..+++++++...+--+.
T Consensus 172 LtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a 251 (299)
T KOG3081|consen 172 LTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLA 251 (299)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 44455555554 34555555555555544445566677888899999999999999999999999988776666664
Q ss_pred HHHH
Q 023518 115 ERIA 118 (281)
Q Consensus 115 ~~l~ 118 (281)
..++
T Consensus 252 ~~~G 255 (299)
T KOG3081|consen 252 LHLG 255 (299)
T ss_pred HHhC
Confidence 4433
No 241
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.08 E-value=0.0027 Score=48.96 Aligned_cols=65 Identities=25% Similarity=0.192 Sum_probs=59.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCC
Q 023518 39 FADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD 103 (281)
Q Consensus 39 ~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~ 103 (281)
+-..|.++...|+.+.|++.|.+++.+.|..+.+|-++++++...|+.++|+..+++++++....
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~ 110 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ 110 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence 44567788888999999999999999999999999999999999999999999999999997654
No 242
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.08 E-value=0.017 Score=47.46 Aligned_cols=116 Identities=19% Similarity=0.127 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPN--SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~--~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (281)
-+...+++.|..+++..|...+++..+.+|. .++..+..|.+|..+|++.+|...|+.++.-.|+. .+..+.+.-+.
T Consensus 126 ~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La 204 (251)
T COG4700 126 MLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLA 204 (251)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHH
Confidence 5678899999999999999999999999876 46778889999999999999999999999998865 56677888899
Q ss_pred HhhcHHHHHHHHHHhh----hcCCCC-hhHHHHHHHHHHHHHhh
Q 023518 82 KLEEYETAKVALEKGA----SLAPGD-SRFTNLIKECEERIAEE 120 (281)
Q Consensus 82 ~~g~~~~A~~~~~~a~----~~~p~~-~~~~~~l~~~~~~l~~~ 120 (281)
.+|+.++|..-+.... +-.|.- .....|+..+..++++.
T Consensus 205 ~qgr~~ea~aq~~~v~d~~~r~~~H~rkh~reW~~~A~~~~~qs 248 (251)
T COG4700 205 KQGRLREANAQYVAVVDTAKRSRPHYRKHHREWIKTANERLKQS 248 (251)
T ss_pred HhcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhh
Confidence 9998888776554433 333322 23567888887777664
No 243
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.05 E-value=0.012 Score=54.61 Aligned_cols=101 Identities=15% Similarity=0.176 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~ 83 (281)
.++..|.--..+++++.|...|.+||+.+..+..+|+..+.+-++.+...-|...+++|+.+-|.--..||..-..-..+
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEML 154 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 34555666667899999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred hcHHHHHHHHHHhhhcCCCCh
Q 023518 84 EEYETAKVALEKGASLAPGDS 104 (281)
Q Consensus 84 g~~~~A~~~~~~a~~~~p~~~ 104 (281)
|+...|...|++-....|+..
T Consensus 155 gNi~gaRqiferW~~w~P~eq 175 (677)
T KOG1915|consen 155 GNIAGARQIFERWMEWEPDEQ 175 (677)
T ss_pred cccHHHHHHHHHHHcCCCcHH
Confidence 999999999999999998654
No 244
>PRK10941 hypothetical protein; Provisional
Probab=97.04 E-value=0.0069 Score=52.98 Aligned_cols=75 Identities=16% Similarity=0.128 Sum_probs=67.0
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 023518 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~ 80 (281)
.+.-..+.+.++|+.|+.+.+..+...|+++.-+..||.+|.++|.+..|+.|++..++..|+++.+-.-+.++.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 445567889999999999999999999999999999999999999999999999999999999988776655443
No 245
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.03 E-value=0.007 Score=57.29 Aligned_cols=94 Identities=22% Similarity=0.169 Sum_probs=79.6
Q ss_pred HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHhhcHHHH
Q 023518 14 IDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS----MSKAYWRKATACMKLEEYETA 89 (281)
Q Consensus 14 ~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~----~~~a~~~~g~~~~~~g~~~~A 89 (281)
...+.+.|.+++.......|+...+++..|+.+...|+.++|++.+++++..... ..-+++.+|.++..+.+|++|
T Consensus 245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 3557788999999999999999999999999999999999999999998854432 245788899999999999999
Q ss_pred HHHHHHhhhcCCCChhHH
Q 023518 90 KVALEKGASLAPGDSRFT 107 (281)
Q Consensus 90 ~~~~~~a~~~~p~~~~~~ 107 (281)
..+|.+..+.+.=...+.
T Consensus 325 ~~~f~~L~~~s~WSka~Y 342 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFY 342 (468)
T ss_pred HHHHHHHHhccccHHHHH
Confidence 999999998765544443
No 246
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0067 Score=53.77 Aligned_cols=84 Identities=17% Similarity=0.207 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHH
Q 023518 36 AELFADRAQASIKLQNFTEAVADANRAIELEPS----MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIK 111 (281)
Q Consensus 36 ~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~----~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 111 (281)
+.-|-.-|+-|++-++|..|...|..+|...-. ++..|.+++-|.+.+|+|..|+..+.+++.++|.+..+...-+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 566778899999999999999999999986533 4668899999999999999999999999999999987776667
Q ss_pred HHHHHHHh
Q 023518 112 ECEERIAE 119 (281)
Q Consensus 112 ~~~~~l~~ 119 (281)
+|.-.|+.
T Consensus 161 kc~~eLe~ 168 (390)
T KOG0551|consen 161 KCLLELER 168 (390)
T ss_pred HHHHHHHH
Confidence 77666666
No 247
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.03 E-value=0.017 Score=50.98 Aligned_cols=108 Identities=17% Similarity=0.200 Sum_probs=84.8
Q ss_pred HHHHHHHHHH-hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcH---HHHHHHHHHH
Q 023518 5 LEKKAKEAFI-DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS---KAYWRKATAC 80 (281)
Q Consensus 5 l~~~g~~~~~-~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~---~a~~~~g~~~ 80 (281)
+...|..-+. .++.+.|...|+.+++..|.+..+|......++.+++...|...|++++..-+... ..|-....--
T Consensus 38 y~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE 117 (280)
T PF05843_consen 38 YVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFE 117 (280)
T ss_dssp HHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 4455555455 67888899999999999999999999999999999999999999999998766554 4666667777
Q ss_pred HHhhcHHHHHHHHHHhhhcCCCChhHHHHHHH
Q 023518 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKE 112 (281)
Q Consensus 81 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 112 (281)
...|+.+......+++.+..|.+..+.....+
T Consensus 118 ~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~r 149 (280)
T PF05843_consen 118 SKYGDLESVRKVEKRAEELFPEDNSLELFSDR 149 (280)
T ss_dssp HHHS-HHHHHHHHHHHHHHTTTS-HHHHHHCC
T ss_pred HHcCCHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 77899999999999999999987665554443
No 248
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.02 E-value=0.015 Score=52.63 Aligned_cols=110 Identities=14% Similarity=0.093 Sum_probs=87.6
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcH
Q 023518 7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY 86 (281)
Q Consensus 7 ~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~ 86 (281)
..+.-+..-|++++|.+...++++..-+.- ++... -..+.+++..=+..+++.+...|+++..++.+|..|++.+.|
T Consensus 268 ~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~--~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w 344 (400)
T COG3071 268 AYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLI--PRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLW 344 (400)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHH--hhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHH
Confidence 456667788999999999999999865433 22222 223457888888899999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 87 ETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 87 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
.+|..+|+.++...|+.. -..+++.+..++++.
T Consensus 345 ~kA~~~leaAl~~~~s~~-~~~~la~~~~~~g~~ 377 (400)
T COG3071 345 GKASEALEAALKLRPSAS-DYAELADALDQLGEP 377 (400)
T ss_pred HHHHHHHHHHHhcCCChh-hHHHHHHHHHHcCCh
Confidence 999999999999988655 467777777666654
No 249
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.02 E-value=0.0023 Score=58.28 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc----CCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC------CcHH
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEI----SPN--SAELFADRAQASIKLQNFTEAVADANRAIELEP------SMSK 71 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~----~p~--~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p------~~~~ 71 (281)
+.-+.|+++.-.|+|+.|+++|...+.+ ... .+...+.+|++|..+++|+.|+.+..+-+.+.. ....
T Consensus 237 A~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~R 316 (639)
T KOG1130|consen 237 AHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELR 316 (639)
T ss_pred hhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 3456789999999999999999988765 222 245678899999999999999999988766543 3467
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhhcC-----CC-ChhHHHHHHHHHHHHHhh
Q 023518 72 AYWRKATACMKLEEYETAKVALEKGASLA-----PG-DSRFTNLIKECEERIAEE 120 (281)
Q Consensus 72 a~~~~g~~~~~~g~~~~A~~~~~~a~~~~-----p~-~~~~~~~l~~~~~~l~~~ 120 (281)
+++.+|.++-.+|+.++|+.+.++.+++. +. .-.....+..+...++..
T Consensus 317 acwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ 371 (639)
T KOG1130|consen 317 ACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQE 371 (639)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCC
Confidence 89999999999999999999888776642 22 222344555555555443
No 250
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.01 E-value=0.0066 Score=57.47 Aligned_cols=97 Identities=15% Similarity=0.091 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-cHHHHHHHHHH
Q 023518 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPN----SAELFADRAQASIKLQNFTEAVADANRAIELEPS-MSKAYWRKATA 79 (281)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~al~~~p~----~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~-~~~a~~~~g~~ 79 (281)
++..|+.+...|+.++|++.|++++..... ....++.+|.|+..+++|++|...+.+.++.+.- .+-..|..|.|
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 467899999999999999999998864322 2456888999999999999999999999987643 34456667899
Q ss_pred HHHhhcH-------HHHHHHHHHhhhcCC
Q 023518 80 CMKLEEY-------ETAKVALEKGASLAP 101 (281)
Q Consensus 80 ~~~~g~~-------~~A~~~~~~a~~~~p 101 (281)
+..+|+. ++|...|.++..+-.
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 9999999 888888888766543
No 251
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.00 E-value=0.055 Score=43.32 Aligned_cols=108 Identities=15% Similarity=-0.004 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~ 83 (281)
.++.........++.+++..++...--+.|+.+.+-..-|..++..|+|.+|+..++.+....|..+-+--.++.|++.+
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 56777888889999999999999998899999999999999999999999999999999999999988888899999999
Q ss_pred hcHHHHHHHHHHhhhcCCCChhHHHHHHHH
Q 023518 84 EEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (281)
Q Consensus 84 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 113 (281)
|+..= ..+-+.+++..+ ++........+
T Consensus 92 ~D~~W-r~~A~evle~~~-d~~a~~Lv~~L 119 (160)
T PF09613_consen 92 GDPSW-RRYADEVLESGA-DPDARALVRAL 119 (160)
T ss_pred CChHH-HHHHHHHHhcCC-ChHHHHHHHHH
Confidence 98641 111223333333 55555544444
No 252
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=97.00 E-value=0.0043 Score=43.99 Aligned_cols=72 Identities=8% Similarity=0.130 Sum_probs=59.9
Q ss_pred ccCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEc--CCCc---eeeeccccccccccCcceEEE-eCcEEEEEEee
Q 023518 179 YQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDV--PGEE---AYHFQPRLFGKIIPAKCRYEV-LSTKVEIRLAK 250 (281)
Q Consensus 179 ~Qt~~~V~i~v~~k~~~~~~~~v~~~~~~l~~~~~~--~~~~---~~~~~~~L~~~I~~~~s~~~v-~~~kiei~L~K 250 (281)
+.+++.+.|.+-++|+.++++.|++..+.|+|+-.. ..+. .|.=.+.|...|+++.-+.++ .++.+.|++.+
T Consensus 4 ~e~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~~ 81 (81)
T cd06479 4 KTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKARR 81 (81)
T ss_pred cCcCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEecC
Confidence 467889999999999999999999999999998543 2222 466677899999999999997 78899998864
No 253
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.99 E-value=0.006 Score=47.96 Aligned_cols=61 Identities=21% Similarity=0.191 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIE 64 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 64 (281)
.+...+..+...|+|++|+..+.+++..+|-+-.++..+..+|..+|++.+|+..|+++..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3455677788999999999999999999999999999999999999999999999998764
No 254
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=96.96 E-value=0.0045 Score=44.42 Aligned_cols=73 Identities=8% Similarity=0.099 Sum_probs=60.5
Q ss_pred cccccCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcCC----C----ceeeeccccccccccCcceEEEe-CcEEEE
Q 023518 176 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG----E----EAYHFQPRLFGKIIPAKCRYEVL-STKVEI 246 (281)
Q Consensus 176 ~~w~Qt~~~V~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~~----~----~~~~~~~~L~~~I~~~~s~~~v~-~~kiei 246 (281)
.+++.+++.+.|.+-+.|+.+++++|++.++.|.|+-.... + ..|.-.+.|...|++++.+.+.. ++.+.|
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~I 82 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILTV 82 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEEE
Confidence 46889999999999999999999999999999999864321 1 13666778999999999999997 788888
Q ss_pred EE
Q 023518 247 RL 248 (281)
Q Consensus 247 ~L 248 (281)
+|
T Consensus 83 ~l 84 (86)
T cd06475 83 EA 84 (86)
T ss_pred Ee
Confidence 76
No 255
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.95 E-value=0.0044 Score=40.14 Aligned_cols=43 Identities=21% Similarity=0.185 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 023518 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA 79 (281)
Q Consensus 37 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~ 79 (281)
+.++.+|..++++|+|.+|+..++.++++.|++..+......+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 4678888889999999999999999999999887766554433
No 256
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=96.94 E-value=0.004 Score=44.28 Aligned_cols=68 Identities=19% Similarity=0.194 Sum_probs=57.2
Q ss_pred CeEEEEEEecCCCCcceEEEEeeeEEEEEEEcCCC--------ceeeeccccccccccCcceEEEeC-cEEEEEEee
Q 023518 183 EEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGE--------EAYHFQPRLFGKIIPAKCRYEVLS-TKVEIRLAK 250 (281)
Q Consensus 183 ~~V~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~~~--------~~~~~~~~L~~~I~~~~s~~~v~~-~kiei~L~K 250 (281)
+.+.|.+-+.|+.+++++|.+..+.|.|+-..... ..|.-.+.|...|+++..+.++.+ +.+.|++.|
T Consensus 7 ~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~Pk 83 (83)
T cd06526 7 EKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK 83 (83)
T ss_pred eeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEecC
Confidence 57889999999999999999999999998643211 257778899999999999999998 899999876
No 257
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=0.014 Score=50.33 Aligned_cols=116 Identities=12% Similarity=0.105 Sum_probs=94.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH----cCC--CcHHHHHHHH
Q 023518 5 LEKKAKEAFIDDYFELAYDLYSQAIEIS-PNSAELFADRAQASIKLQNFTEAVADANRAIE----LEP--SMSKAYWRKA 77 (281)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~al~~~-p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~----l~p--~~~~a~~~~g 77 (281)
++...+.+.-.|+|.-.+..|.+.++.+ |.++.+...+|...+..|+.+.|...|+++-+ ++. ....++.+++
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3456777888999999999999999988 67788999999999999999999999995443 332 3455777888
Q ss_pred HHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 78 TACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 78 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
.+|...++|..|...|.+++..|+.++.+-...+-|..-+++.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l 302 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKL 302 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHH
Confidence 8999999999999999999999999987766655555555444
No 258
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=96.89 E-value=0.0053 Score=44.06 Aligned_cols=72 Identities=10% Similarity=0.130 Sum_probs=59.2
Q ss_pred ccCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcC---CCc-----eeeeccccccccccCcceEEE-eCcEEEEEEe
Q 023518 179 YQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GEE-----AYHFQPRLFGKIIPAKCRYEV-LSTKVEIRLA 249 (281)
Q Consensus 179 ~Qt~~~V~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~---~~~-----~~~~~~~L~~~I~~~~s~~~v-~~~kiei~L~ 249 (281)
+.+++.+.|.+-+.|+.+++++|++..+.|.|+-... ++. +|.=.+.|...|++++-+.++ .++.+.|+|.
T Consensus 6 ~e~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~P 85 (86)
T cd06497 6 RSDRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTFSGP 85 (86)
T ss_pred EEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEEEec
Confidence 4678999999999999999999999999999986421 111 255567899999999999998 6889999987
Q ss_pred e
Q 023518 250 K 250 (281)
Q Consensus 250 K 250 (281)
|
T Consensus 86 K 86 (86)
T cd06497 86 K 86 (86)
T ss_pred C
Confidence 6
No 259
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.85 E-value=0.0024 Score=35.08 Aligned_cols=32 Identities=31% Similarity=0.473 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCC
Q 023518 71 KAYWRKATACMKLEEYETAKVALEKGASLAPG 102 (281)
Q Consensus 71 ~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~ 102 (281)
.+++++|.+++.+|++++|..+|+++++++|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35566666666666666666666666666553
No 260
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=96.82 E-value=0.0073 Score=43.16 Aligned_cols=71 Identities=8% Similarity=0.110 Sum_probs=58.4
Q ss_pred CCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcCC---Cc-----eeeeccccccccccCcceEEEe-CcEEEEEEeec
Q 023518 181 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG---EE-----AYHFQPRLFGKIIPAKCRYEVL-STKVEIRLAKA 251 (281)
Q Consensus 181 t~~~V~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~~---~~-----~~~~~~~L~~~I~~~~s~~~v~-~~kiei~L~K~ 251 (281)
+++.+.|.+-+.|+.++++.|++..+.|+|+-.... +. .|.=.+.|...|+++.-+.+.. ++.+.|+|-|+
T Consensus 5 ~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~lPk~ 84 (84)
T cd06498 5 EKDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVCGPRK 84 (84)
T ss_pred CCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEEEeCC
Confidence 578889999999999999999999999999864321 11 2555668999999999999995 88999999874
No 261
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.80 E-value=0.0029 Score=36.04 Aligned_cols=30 Identities=17% Similarity=0.266 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 023518 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPN 34 (281)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~al~~~p~ 34 (281)
++..|.+++..|++++|+..|++++...|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 444444444444555555555444444443
No 262
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.79 E-value=0.0021 Score=59.43 Aligned_cols=78 Identities=21% Similarity=0.253 Sum_probs=69.9
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 023518 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~ 83 (281)
-+++.++.+.++|..|+.-+.+|++.+|....+|+++|.+.+.+++|.+|+.+++....+.|++..+......|-...
T Consensus 42 anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~v 119 (476)
T KOG0376|consen 42 ANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIV 119 (476)
T ss_pred chhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHH
Confidence 456788899999999999999999999999999999999999999999999999999999999988776665555443
No 263
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.77 E-value=0.025 Score=52.49 Aligned_cols=106 Identities=20% Similarity=0.229 Sum_probs=77.5
Q ss_pred HhcCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHH
Q 023518 14 IDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETA 89 (281)
Q Consensus 14 ~~~~y~~Al~~y~~al~~~p~~----~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A 89 (281)
..+|.+.+.+.|+.+|++-|+. +..|+..|...++..+...|...+-.||...|.+ +.+-..-..-.++++++..
T Consensus 378 e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRc 456 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRC 456 (677)
T ss_pred HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHH
Confidence 4567788888888888887775 5667777788888888888888888888887765 2333334455567788888
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 90 KVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 90 ~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
...|++.++..|.+-..|...+.++..|++.
T Consensus 457 RkLYEkfle~~Pe~c~~W~kyaElE~~Lgdt 487 (677)
T KOG1915|consen 457 RKLYEKFLEFSPENCYAWSKYAELETSLGDT 487 (677)
T ss_pred HHHHHHHHhcChHhhHHHHHHHHHHHHhhhH
Confidence 8888888888887777777777777766665
No 264
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.70 E-value=0.0064 Score=54.58 Aligned_cols=95 Identities=17% Similarity=0.153 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC----------
Q 023518 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPS---------- 68 (281)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~------~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~---------- 68 (281)
....|+++.-.+.|+++++.|+.|++..-++ -.++..+|..+-.++++++|+-...+|..+-..
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 4557889999999999999999999984433 356888999999999999999999999876432
Q ss_pred cHHHHHHHHHHHHHhhcHHHHHHHHHHhhhc
Q 023518 69 MSKAYWRKATACMKLEEYETAKVALEKGASL 99 (281)
Q Consensus 69 ~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~ 99 (281)
...++|.+++++..+|+..+|.++++++.++
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 2457788999999999999999999988765
No 265
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.70 E-value=0.026 Score=52.63 Aligned_cols=91 Identities=13% Similarity=0.137 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhc-HHHHHHHHHHhh
Q 023518 19 ELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE-YETAKVALEKGA 97 (281)
Q Consensus 19 ~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~-~~~A~~~~~~a~ 97 (281)
..-..+|+.|+...+.+..+|.+....-.+.+.+.+--..|.+++..+|+++..|...|.-.+..+. .+.|+..|.+++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 3456789999999999999999988777777889999999999999999999999999988888776 999999999999
Q ss_pred hcCCCChhHHHH
Q 023518 98 SLAPGDSRFTNL 109 (281)
Q Consensus 98 ~~~p~~~~~~~~ 109 (281)
+++|+.+.++..
T Consensus 168 R~npdsp~Lw~e 179 (568)
T KOG2396|consen 168 RFNPDSPKLWKE 179 (568)
T ss_pred hcCCCChHHHHH
Confidence 999999976543
No 266
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.69 E-value=0.01 Score=56.21 Aligned_cols=102 Identities=15% Similarity=0.104 Sum_probs=91.2
Q ss_pred HhcCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHH
Q 023518 14 IDDYFELAYDLYSQAIEISPNSA-ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVA 92 (281)
Q Consensus 14 ~~~~y~~Al~~y~~al~~~p~~~-~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~ 92 (281)
..|+-..|+.++..|+...|... .-..++|+++++.+-..+|-..+.+++.+.-..+..+|..|.+++.+.+.+.|++.
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence 46888999999999999888653 45789999999999999999999999999988888999999999999999999999
Q ss_pred HHHhhhcCCCChhHHHHHHHHHH
Q 023518 93 LEKGASLAPGDSRFTNLIKECEE 115 (281)
Q Consensus 93 ~~~a~~~~p~~~~~~~~l~~~~~ 115 (281)
|+.|+.++|++.....-+..+..
T Consensus 699 ~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 699 FRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999999988777766654
No 267
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.67 E-value=0.022 Score=41.26 Aligned_cols=49 Identities=12% Similarity=0.161 Sum_probs=34.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc
Q 023518 21 AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM 69 (281)
Q Consensus 21 Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 69 (281)
.+..+.+.+..+|++..+.+.+|..++..|++++|++.+-.+++.++++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 3556677777777777777777777777777777777777777777654
No 268
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.65 E-value=0.027 Score=56.00 Aligned_cols=90 Identities=13% Similarity=0.073 Sum_probs=65.1
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHH
Q 023518 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE 87 (281)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~ 87 (281)
....+.+.|++++|.+++.+.- ..|+ ...|..+..++...|+++.|...+++++.+.|.+...|..++.+|...|+++
T Consensus 468 li~~l~r~G~~~eA~~~~~~~~-~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~ 545 (697)
T PLN03081 468 MIELLGREGLLDEAYAMIRRAP-FKPT-VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQA 545 (697)
T ss_pred HHHHHHhcCCHHHHHHHHHHCC-CCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHH
Confidence 4455667777777777776532 2333 4456667777777788888888888888888887777888888888888888
Q ss_pred HHHHHHHHhhhc
Q 023518 88 TAKVALEKGASL 99 (281)
Q Consensus 88 ~A~~~~~~a~~~ 99 (281)
+|...++...+.
T Consensus 546 ~A~~v~~~m~~~ 557 (697)
T PLN03081 546 EAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHHc
Confidence 888888766544
No 269
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.62 E-value=0.035 Score=46.97 Aligned_cols=91 Identities=18% Similarity=0.083 Sum_probs=68.3
Q ss_pred HhcCHHHHHHHHHHHHhc----CCCC---HHHHHHHHHHHHHccCH-------HHHHHHHHHHHHcCC------CcHHHH
Q 023518 14 IDDYFELAYDLYSQAIEI----SPNS---AELFADRAQASIKLQNF-------TEAVADANRAIELEP------SMSKAY 73 (281)
Q Consensus 14 ~~~~y~~Al~~y~~al~~----~p~~---~~~~~~~a~~~~~l~~~-------~~A~~~~~~al~l~p------~~~~a~ 73 (281)
....+++|++.|.-|+.. .... +.+++.+|.+|..+++- ..|+..|.+++.... +.....
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 355788899988888765 2122 67788899999999884 445556666664432 236788
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHhhhcCCCCh
Q 023518 74 WRKATACMKLEEYETAKVALEKGASLAPGDS 104 (281)
Q Consensus 74 ~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~ 104 (281)
|.+|..++++|++++|..+|.+.+.....+.
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999999999998765544
No 270
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.62 E-value=0.013 Score=57.14 Aligned_cols=115 Identities=22% Similarity=0.353 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHc--cCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 023518 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKL--QNFTEAVADANRAIELEPSMSKAYWRK 76 (281)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~----~~~~~~~a~~~~~l--~~~~~A~~~~~~al~l~p~~~~a~~~~ 76 (281)
..+...|+.++..++|.+|.-.|..++..-|.+ .....+++.|+..+ ++|..++..+.-|+...|....+.+.+
T Consensus 54 ~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r 133 (748)
T KOG4151|consen 54 LELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKR 133 (748)
T ss_pred HHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhh
Confidence 356778999999999999999999999987743 56677888888876 699999999999999999999999999
Q ss_pred HHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 023518 77 ATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (281)
Q Consensus 77 g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l 117 (281)
+.+|..+++++-|.+.+.-....+|.+..+..-..+.+..+
T Consensus 134 ~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll 174 (748)
T KOG4151|consen 134 ARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL 174 (748)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 99999999999999998888899999876655555555555
No 271
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.61 E-value=0.0099 Score=52.31 Aligned_cols=76 Identities=18% Similarity=0.102 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHH
Q 023518 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE 112 (281)
Q Consensus 37 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 112 (281)
.+-.+.|.-..+.|+.+.|...|+.|+.++|+++.++..+|+.....++.-+|..||-+|+.++|.+..+.....+
T Consensus 117 ~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 117 ILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 3445566666778999999999999999999999999999999999999999999999999999999876554443
No 272
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.61 E-value=0.049 Score=47.05 Aligned_cols=91 Identities=13% Similarity=0.172 Sum_probs=79.0
Q ss_pred hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHH-HHH
Q 023518 15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAK-VAL 93 (281)
Q Consensus 15 ~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~-~~~ 93 (281)
.+.+++|.-+|++.-+..+..+..+...|.|++.+++|++|...++.|+..+++++..+.++-.+-..+|...++. +.+
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 4468999999999888777778899999999999999999999999999999999999999999999999876665 456
Q ss_pred HHhhhcCCCChh
Q 023518 94 EKGASLAPGDSR 105 (281)
Q Consensus 94 ~~a~~~~p~~~~ 105 (281)
.+....+|.++-
T Consensus 266 ~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 266 SQLKLSHPEHPF 277 (299)
T ss_pred HHHHhcCCcchH
Confidence 667777787663
No 273
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=96.60 E-value=0.019 Score=41.50 Aligned_cols=73 Identities=12% Similarity=0.168 Sum_probs=57.0
Q ss_pred cccccC-CCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcC--C------------CceeeeccccccccccCcceEEEe
Q 023518 176 HEFYQK-PEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP--G------------EEAYHFQPRLFGKIIPAKCRYEVL 240 (281)
Q Consensus 176 ~~w~Qt-~~~V~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~--~------------~~~~~~~~~L~~~I~~~~s~~~v~ 240 (281)
++=+++ ++..+|.+.+.|+.++++.|.+..+.|.|+.... . -..|.-.+.|...|+.+ +.+..
T Consensus 3 ~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A~~~ 80 (90)
T cd06470 3 YNIEKTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GAELE 80 (90)
T ss_pred eeeEEcCCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--eeEEe
Confidence 344565 4899999999999999999999999999985321 1 12466677888888886 67888
Q ss_pred CcEEEEEEee
Q 023518 241 STKVEIRLAK 250 (281)
Q Consensus 241 ~~kiei~L~K 250 (281)
++.+.|+|.+
T Consensus 81 ~GvL~I~l~~ 90 (90)
T cd06470 81 NGLLTIDLER 90 (90)
T ss_pred CCEEEEEEEC
Confidence 8999999864
No 274
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.59 E-value=0.027 Score=57.50 Aligned_cols=93 Identities=15% Similarity=0.012 Sum_probs=76.5
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC------cHHHHHH
Q 023518 7 KKAKEAFIDDYFELAYDLYSQAIEISPNS-----AELFADRAQASIKLQNFTEAVADANRAIELEPS------MSKAYWR 75 (281)
Q Consensus 7 ~~g~~~~~~~~y~~Al~~y~~al~~~p~~-----~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~------~~~a~~~ 75 (281)
..|..++..|+|++|...+.+++...+.. ..++..+|.++...|++++|...+.+++..... ...++..
T Consensus 457 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~ 536 (903)
T PRK04841 457 LRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQ 536 (903)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence 35777889999999999999999864443 235677899999999999999999999976432 1346677
Q ss_pred HHHHHHHhhcHHHHHHHHHHhhhc
Q 023518 76 KATACMKLEEYETAKVALEKGASL 99 (281)
Q Consensus 76 ~g~~~~~~g~~~~A~~~~~~a~~~ 99 (281)
+|.+++..|++++|...+++++.+
T Consensus 537 la~~~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 537 QSEILFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 899999999999999999998875
No 275
>PRK10743 heat shock protein IbpA; Provisional
Probab=96.57 E-value=0.018 Score=45.16 Aligned_cols=75 Identities=11% Similarity=0.119 Sum_probs=61.4
Q ss_pred Ccccc-cCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcC---CCc----------eeeeccccccccccCcceEEEe
Q 023518 175 RHEFY-QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GEE----------AYHFQPRLFGKIIPAKCRYEVL 240 (281)
Q Consensus 175 r~~w~-Qt~~~V~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~---~~~----------~~~~~~~L~~~I~~~~s~~~v~ 240 (281)
.++-+ .+++.+.|.+-+.|+.++++.|++..+.|+|+-... .+. .|.=.+.|-..|++++ .+..
T Consensus 36 ~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~--A~~~ 113 (137)
T PRK10743 36 PYNVELVDENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRG--ANLV 113 (137)
T ss_pred cEEEEEcCCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccCc--CEEe
Confidence 47888 489999999999999999999999999999986321 111 3555678999999983 7888
Q ss_pred CcEEEEEEeec
Q 023518 241 STKVEIRLAKA 251 (281)
Q Consensus 241 ~~kiei~L~K~ 251 (281)
++.+.|+|-|.
T Consensus 114 dGVL~I~lPK~ 124 (137)
T PRK10743 114 NGLLYIDLERV 124 (137)
T ss_pred CCEEEEEEeCC
Confidence 99999999996
No 276
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=96.53 E-value=0.013 Score=41.77 Aligned_cols=71 Identities=14% Similarity=0.146 Sum_probs=57.4
Q ss_pred cCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcC---CC-----ceeeeccccccccccCcceEEE-eCcEEEEEEee
Q 023518 180 QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GE-----EAYHFQPRLFGKIIPAKCRYEV-LSTKVEIRLAK 250 (281)
Q Consensus 180 Qt~~~V~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~---~~-----~~~~~~~~L~~~I~~~~s~~~v-~~~kiei~L~K 250 (281)
.+++.+.|.+-+.|+.+++++|++..+.|.|+.... ++ ..|.=.+.|...|+++.-+.++ .++.+.|++-|
T Consensus 4 ~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I~~PK 83 (83)
T cd06478 4 LDKDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTISGPR 83 (83)
T ss_pred ecCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEEEecC
Confidence 467889999999999999999999999999986432 11 1255667899999999888888 47889998866
No 277
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.47 E-value=0.11 Score=44.25 Aligned_cols=101 Identities=21% Similarity=0.160 Sum_probs=75.6
Q ss_pred HHHHHHHHHHh-cCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc------HH
Q 023518 5 LEKKAKEAFID-DYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPSM------SK 71 (281)
Q Consensus 5 l~~~g~~~~~~-~~y~~Al~~y~~al~~~p~~------~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~------~~ 71 (281)
.+..|..|-.. .++++||.+|.++-+..... -..++..|.....+++|.+|+..|++..+-.-++ .+
T Consensus 116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~K 195 (288)
T KOG1586|consen 116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAK 195 (288)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHH
Confidence 34556666655 78999999999998874332 2356667777777899999999999887655443 33
Q ss_pred -HHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChh
Q 023518 72 -AYWRKATACMKLEEYETAKVALEKGASLAPGDSR 105 (281)
Q Consensus 72 -a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 105 (281)
.++.-|.|++...+.-.+...+++..+++|.-..
T Consensus 196 dyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 196 DYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 3455678888889999999999999999997544
No 278
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.46 E-value=0.0053 Score=33.61 Aligned_cols=31 Identities=29% Similarity=0.506 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCC
Q 023518 38 LFADRAQASIKLQNFTEAVADANRAIELEPS 68 (281)
Q Consensus 38 ~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~ 68 (281)
++..+|.++..+++++.|+..+.+++.++|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4556666666666666666666666665553
No 279
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.45 E-value=0.0043 Score=36.59 Aligned_cols=25 Identities=16% Similarity=0.080 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHhh
Q 023518 73 YWRKATACMKLEEYETAKVALEKGA 97 (281)
Q Consensus 73 ~~~~g~~~~~~g~~~~A~~~~~~a~ 97 (281)
+..+|.+|..+|+|++|+.+|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555666666666666666665543
No 280
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.42 E-value=0.0051 Score=51.88 Aligned_cols=59 Identities=27% Similarity=0.296 Sum_probs=37.1
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc
Q 023518 11 EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM 69 (281)
Q Consensus 11 ~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 69 (281)
.+.+.+|++.|.++|.+++.+.|+...-|++.|....+.|+++.|...|++.++++|.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34455666666666666666666666666666666666666666666666666666644
No 281
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.41 E-value=0.027 Score=57.49 Aligned_cols=96 Identities=9% Similarity=0.040 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC--------cH
Q 023518 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPS--------MS 70 (281)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~------~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~--------~~ 70 (281)
+...|..++..|++++|...+.+++...... ...+..+|.+++..|++++|...+++++.+... ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 3456778889999999999999998763321 345677899999999999999999999876321 23
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhhhcC
Q 023518 71 KAYWRKATACMKLEEYETAKVALEKGASLA 100 (281)
Q Consensus 71 ~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~ 100 (281)
..+..+|.+++..|++++|...+.+++...
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 603 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVL 603 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence 345678899999999999999999987753
No 282
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.38 E-value=0.11 Score=54.01 Aligned_cols=89 Identities=12% Similarity=0.092 Sum_probs=40.6
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhhc
Q 023518 9 AKEAFIDDYFELAYDLYSQAIEI--SPNSAELFADRAQASIKLQNFTEAVADANRAIELE-PSMSKAYWRKATACMKLEE 85 (281)
Q Consensus 9 g~~~~~~~~y~~Al~~y~~al~~--~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~-p~~~~a~~~~g~~~~~~g~ 85 (281)
...|.+.|++++|+++|.+.... .| +...|..+..+|.+.|++++|+..++.....+ .-+...|..+-.+|.+.|+
T Consensus 691 I~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~ 769 (1060)
T PLN03218 691 MGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDD 769 (1060)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 33444445555555555444322 22 23344445555555555555555555444322 1122333334445555555
Q ss_pred HHHHHHHHHHhhh
Q 023518 86 YETAKVALEKGAS 98 (281)
Q Consensus 86 ~~~A~~~~~~a~~ 98 (281)
++.|...|.+..+
T Consensus 770 le~A~~l~~~M~k 782 (1060)
T PLN03218 770 ADVGLDLLSQAKE 782 (1060)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555544
No 283
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.36 E-value=0.093 Score=52.12 Aligned_cols=100 Identities=17% Similarity=0.038 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhh
Q 023518 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (281)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g 84 (281)
..-+|..+++.|++++|..+++..-...+++-..+-.+-.||..++++++|...|++++..+|. -+-.+.+..+|.+-+
T Consensus 46 ~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~ 124 (932)
T KOG2053|consen 46 KVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREK 124 (932)
T ss_pred HHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHH
Confidence 3457888999999999998888777778888888888999999999999999999999999999 788889999999999
Q ss_pred cHHHHHHHHHHhhhcCCCChh
Q 023518 85 EYETAKVALEKGASLAPGDSR 105 (281)
Q Consensus 85 ~~~~A~~~~~~a~~~~p~~~~ 105 (281)
.|.+-.+.--+..+..|.++-
T Consensus 125 ~yk~qQkaa~~LyK~~pk~~y 145 (932)
T KOG2053|consen 125 SYKKQQKAALQLYKNFPKRAY 145 (932)
T ss_pred HHHHHHHHHHHHHHhCCcccc
Confidence 998766666666667777764
No 284
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.35 E-value=0.048 Score=51.01 Aligned_cols=100 Identities=14% Similarity=0.167 Sum_probs=56.1
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHh
Q 023518 7 KKAKEAFIDDYFELAYDLYSQAIEISPN--SAELFADRAQASIKLQNFTEAVADANRAIEL-EPSMSKAYWRKATACMKL 83 (281)
Q Consensus 7 ~~g~~~~~~~~y~~Al~~y~~al~~~p~--~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l-~p~~~~a~~~~g~~~~~~ 83 (281)
..|+++.+.|+.++|++.|...++.+|. +..++.++..|++.++.|.++...+.+-=.+ -|..+...|..+..-++.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRa 343 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARA 343 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHh
Confidence 4566666777777777777777766554 3456666777777777777766655553222 133444444444333221
Q ss_pred h-c---------------HHHHHHHHHHhhhcCCCChhH
Q 023518 84 E-E---------------YETAKVALEKGASLAPGDSRF 106 (281)
Q Consensus 84 g-~---------------~~~A~~~~~~a~~~~p~~~~~ 106 (281)
. + -..|.+++.+|++.+|.-+.+
T Consensus 344 v~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 344 VGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred hccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 1 1 123556666777776665543
No 285
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.33 E-value=0.078 Score=43.43 Aligned_cols=98 Identities=14% Similarity=0.103 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC--c----HHHH
Q 023518 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPS--M----SKAY 73 (281)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~---~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~--~----~~a~ 73 (281)
..+..+|+-+++.||++.|++.|.++.+..-.. .+.++....+.+-.+++..+.....++-.+-.. + .+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 356788999999999999999999988864332 467778888888889999999988888765432 2 2233
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHhhhcC
Q 023518 74 WRKATACMKLEEYETAKVALEKGASLA 100 (281)
Q Consensus 74 ~~~g~~~~~~g~~~~A~~~~~~a~~~~ 100 (281)
...|..+...++|..|-..|-.+..-.
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 446888888899999999887776544
No 286
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.28 E-value=0.12 Score=53.63 Aligned_cols=88 Identities=10% Similarity=0.092 Sum_probs=37.7
Q ss_pred HHHHHhcCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhh
Q 023518 10 KEAFIDDYFELAYDLYSQAIEI----SPNSAELFADRAQASIKLQNFTEAVADANRAIELE-PSMSKAYWRKATACMKLE 84 (281)
Q Consensus 10 ~~~~~~~~y~~Al~~y~~al~~----~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~-p~~~~a~~~~g~~~~~~g 84 (281)
..+.+.|++++|.++|.+.... .|+ ...|..+..+|.+.|++++|++.|+...+.+ +.+...|..+..+|.+.|
T Consensus 550 ~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G 628 (1060)
T PLN03218 550 SACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKG 628 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Confidence 3344444444444444444331 222 2233334444444444444444444444443 223334444444444444
Q ss_pred cHHHHHHHHHHhhh
Q 023518 85 EYETAKVALEKGAS 98 (281)
Q Consensus 85 ~~~~A~~~~~~a~~ 98 (281)
++++|...|.+..+
T Consensus 629 ~~deAl~lf~eM~~ 642 (1060)
T PLN03218 629 DWDFALSIYDDMKK 642 (1060)
T ss_pred CHHHHHHHHHHHHH
Confidence 44444444444433
No 287
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.28 E-value=0.0089 Score=35.22 Aligned_cols=29 Identities=10% Similarity=0.195 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC
Q 023518 38 LFADRAQASIKLQNFTEAVADANRAIELE 66 (281)
Q Consensus 38 ~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 66 (281)
+|.++|.+|..+|+|++|+..|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 36778888888888888888888866443
No 288
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.27 E-value=0.03 Score=55.67 Aligned_cols=26 Identities=8% Similarity=-0.102 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhh
Q 023518 72 AYWRKATACMKLEEYETAKVALEKGA 97 (281)
Q Consensus 72 a~~~~g~~~~~~g~~~~A~~~~~~a~ 97 (281)
.|..+..+|.+.|+.++|...|++..
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~ 418 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMI 418 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444555555555555555443
No 289
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=96.19 E-value=0.033 Score=43.87 Aligned_cols=75 Identities=11% Similarity=0.125 Sum_probs=60.2
Q ss_pred Cccccc-CCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcC---CCc----------eeeeccccccccccCcceEEEe
Q 023518 175 RHEFYQ-KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GEE----------AYHFQPRLFGKIIPAKCRYEVL 240 (281)
Q Consensus 175 r~~w~Q-t~~~V~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~---~~~----------~~~~~~~L~~~I~~~~s~~~v~ 240 (281)
.++=++ +++.+.|++-+.|+.++++.|++..+.|+|+.... .+. .|.-.+.|-..|+++ +.+..
T Consensus 34 ~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A~~~ 111 (142)
T PRK11597 34 PYNIEKSDDNHYRITLALAGFRQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--GATFV 111 (142)
T ss_pred cEEEEEcCCCEEEEEEEeCCCCHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--cCEEc
Confidence 366676 57789999999999999999999999999986421 111 255566788899998 57888
Q ss_pred CcEEEEEEeec
Q 023518 241 STKVEIRLAKA 251 (281)
Q Consensus 241 ~~kiei~L~K~ 251 (281)
++-+.|+|-|.
T Consensus 112 nGVL~I~lPK~ 122 (142)
T PRK11597 112 NGLLHIDLIRN 122 (142)
T ss_pred CCEEEEEEecc
Confidence 99999999986
No 290
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.17 E-value=0.14 Score=43.94 Aligned_cols=100 Identities=22% Similarity=0.166 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-----CCcHHH
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELE-----PSMSKA 72 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~------~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~-----p~~~~a 72 (281)
.+...+..+-..++|++|-..+.+|.+-..+| +..|-..|.....+..+.++...+++|..+. |+-+..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAm 112 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAM 112 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHH
Confidence 44455666667889999999999999776665 3445666777777889999999999998764 444555
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHhhhcCCCC
Q 023518 73 YWRKATACMKLEEYETAKVALEKGASLAPGD 103 (281)
Q Consensus 73 ~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~ 103 (281)
-+.++--.....+.++|+..|++++.+-..+
T Consensus 113 aleKAak~lenv~Pd~AlqlYqralavve~~ 143 (308)
T KOG1585|consen 113 ALEKAAKALENVKPDDALQLYQRALAVVEED 143 (308)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Confidence 5556666667788999999999988764433
No 291
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.14 E-value=0.09 Score=44.69 Aligned_cols=93 Identities=23% Similarity=0.193 Sum_probs=51.3
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHc-cCHHHHHHHHHHHHHcCCC------cHHHHHHHHH
Q 023518 12 AFIDDYFELAYDLYSQAIEISPNSA------ELFADRAQASIKL-QNFTEAVADANRAIELEPS------MSKAYWRKAT 78 (281)
Q Consensus 12 ~~~~~~y~~Al~~y~~al~~~p~~~------~~~~~~a~~~~~l-~~~~~A~~~~~~al~l~p~------~~~a~~~~g~ 78 (281)
+|+..+..+|+.++.+++++.-+.. ..+..+|..|..- .+++.|+..|+++-..... -.++++..+.
T Consensus 83 cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ 162 (288)
T KOG1586|consen 83 CYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQ 162 (288)
T ss_pred HhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHH
Confidence 4445566666666666665543322 2223444444432 5566666666666543321 2345666666
Q ss_pred HHHHhhcHHHHHHHHHHhhhcCCCCh
Q 023518 79 ACMKLEEYETAKVALEKGASLAPGDS 104 (281)
Q Consensus 79 ~~~~~g~~~~A~~~~~~a~~~~p~~~ 104 (281)
.-..+++|.+|+..|++..+..-++.
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccch
Confidence 66677777777777777666554444
No 292
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=96.10 E-value=0.036 Score=39.45 Aligned_cols=70 Identities=16% Similarity=0.127 Sum_probs=55.9
Q ss_pred CCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcC---CCc-----eeeeccccccccccCcceEEEe-CcEEEEEEee
Q 023518 181 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GEE-----AYHFQPRLFGKIIPAKCRYEVL-STKVEIRLAK 250 (281)
Q Consensus 181 t~~~V~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~---~~~-----~~~~~~~L~~~I~~~~s~~~v~-~~kiei~L~K 250 (281)
.++...|.+-++|+.+++++|++..+.|.|+-... .+. +|.=.+.|...|+++.-+.+.. ++.+.|+|-|
T Consensus 5 ~~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~~Pr 83 (83)
T cd06476 5 EDDKYQVFLDVCHFTPDEITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQAPR 83 (83)
T ss_pred cCCeEEEEEEcCCCCHHHeEEEEECCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEEecC
Confidence 46778889999999999999999999999985421 111 2445667999999999999996 8899998854
No 293
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.09 E-value=0.071 Score=55.32 Aligned_cols=108 Identities=13% Similarity=0.017 Sum_probs=86.4
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHhhc
Q 023518 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWRKATACMKLEE 85 (281)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~--~~~a~~~~g~~~~~~g~ 85 (281)
....|.+.+.+++|.++|+..++..-+....|..+|..+++.++-++|...+.+|+.--|. .....-..|+.-|+.|+
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 3455666778888888888888887777888888888888888888888888888888886 56677778888888888
Q ss_pred HHHHHHHHHHhhhcCCCChhHHHHHHHHHH
Q 023518 86 YETAKVALEKGASLAPGDSRFTNLIKECEE 115 (281)
Q Consensus 86 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 115 (281)
-+.++..|+-.+.-+|.-.++|........
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~ei 1645 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEI 1645 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHH
Confidence 888888888888888877776655544443
No 294
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.03 E-value=0.011 Score=49.94 Aligned_cols=63 Identities=24% Similarity=0.256 Sum_probs=57.7
Q ss_pred HHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhH
Q 023518 44 QASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF 106 (281)
Q Consensus 44 ~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 106 (281)
....+.++.+.|.+.|.+++.+.|.....|+|+|......|+++.|...|++.++++|.+...
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~g 65 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGG 65 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccc
Confidence 345567899999999999999999999999999999999999999999999999999987653
No 295
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.96 E-value=0.01 Score=55.24 Aligned_cols=78 Identities=12% Similarity=0.107 Sum_probs=67.8
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhc---------C---------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC
Q 023518 6 EKKAKEAFIDDYFELAYDLYSQAIEI---------S---------PNSAELFADRAQASIKLQNFTEAVADANRAIELEP 67 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~---------~---------p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p 67 (281)
.+.|..+|+.+.|..++.+|.+||+. . ...-+++|+.|..|+..|+.-.|.++|.++++...
T Consensus 287 NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh 366 (696)
T KOG2471|consen 287 NNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH 366 (696)
T ss_pred cCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 45678889999999999999999961 1 12357899999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHh
Q 023518 68 SMSKAYWRKATACMKL 83 (281)
Q Consensus 68 ~~~~a~~~~g~~~~~~ 83 (281)
.++..|+|++.|+.-.
T Consensus 367 ~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 367 RNPRLWLRLAECCIMA 382 (696)
T ss_pred cCcHHHHHHHHHHHHH
Confidence 9999999999998743
No 296
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.95 E-value=0.11 Score=41.09 Aligned_cols=84 Identities=15% Similarity=-0.073 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~ 83 (281)
.+++.........+.+++..++...--+.|+.+.+-..-|..++..|+|.+|+..++......+..+-+.-.++.|++.+
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al 91 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence 45566666777889999999998888889999999999999999999999999999999988888887878889999999
Q ss_pred hcHH
Q 023518 84 EEYE 87 (281)
Q Consensus 84 g~~~ 87 (281)
|+.+
T Consensus 92 ~Dp~ 95 (153)
T TIGR02561 92 GDAE 95 (153)
T ss_pred CChH
Confidence 8854
No 297
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.92 E-value=0.0019 Score=57.33 Aligned_cols=75 Identities=19% Similarity=0.251 Sum_probs=67.2
Q ss_pred HHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 46 SIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 46 ~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
.+..|.++.|++.|.++|.++|..+..|-.++.++..+++...|+..|..++.++|+...-..|...++..++.-
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNW 198 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhch
Confidence 344578999999999999999999999999999999999999999999999999999888777777777766654
No 298
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.90 E-value=0.081 Score=37.02 Aligned_cols=64 Identities=17% Similarity=0.226 Sum_probs=49.7
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHccCHHHHHHHHHHHHHc
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAE---LFADRAQASIKLQNFTEAVADANRAIEL 65 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~---~~~~~a~~~~~l~~~~~A~~~~~~al~l 65 (281)
+...+.+|..+|...+.++|+..++++++..++..+ ++-.+.++|...|+|.+++.++-+=+.+
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678899999999999999999999998777654 4445667788889999988876665543
No 299
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.90 E-value=0.11 Score=52.89 Aligned_cols=111 Identities=16% Similarity=0.146 Sum_probs=87.1
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHc----c---CHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 023518 9 AKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKL----Q---NFTEAVADANRAIELEPSMSKAYWRKAT 78 (281)
Q Consensus 9 g~~~~~~~~y~~Al~~y~~al~~~p~~---~~~~~~~a~~~~~l----~---~~~~A~~~~~~al~l~p~~~~a~~~~g~ 78 (281)
.+++...+.|+.|+..|++.-...|.. -++.++.|.+++.. + .+.+|+.-|++.. -.+.-+.-|+..|.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 560 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKAL 560 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHH
Confidence 356778899999999999999988775 46777788777664 2 4666666665533 44566778899999
Q ss_pred HHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 79 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
+|.++|+|++=+++|..|++..|+++.+......+-.++-+.
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (932)
T PRK13184 561 VYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHES 602 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Confidence 999999999999999999999999998877666665555544
No 300
>PLN03077 Protein ECB2; Provisional
Probab=95.90 E-value=0.093 Score=53.51 Aligned_cols=105 Identities=14% Similarity=0.122 Sum_probs=66.0
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhh
Q 023518 8 KAKEAFIDDYFELAYDLYSQAIEI---SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (281)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~~al~~---~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g 84 (281)
.-..+...|++++|.++|....+. .| +...|.-+..+|.+.|++++|.+.++.. .+.|+ ...|-.+-.+|...|
T Consensus 595 ll~a~~~~g~v~ea~~~f~~M~~~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~ 671 (857)
T PLN03077 595 LLCACSRSGMVTQGLEYFHSMEEKYSITP-NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHR 671 (857)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcC
Confidence 334566677777777777776633 23 2456666777777777777777776653 23443 344555555566666
Q ss_pred cHHHHHHHHHHhhhcCCCChhHHHHHHHHHH
Q 023518 85 EYETAKVALEKGASLAPGDSRFTNLIKECEE 115 (281)
Q Consensus 85 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 115 (281)
+.+.|....+++++++|++......+..++.
T Consensus 672 ~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya 702 (857)
T PLN03077 672 HVELGELAAQHIFELDPNSVGYYILLCNLYA 702 (857)
T ss_pred ChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Confidence 7777777777777777777666665555543
No 301
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.89 E-value=0.13 Score=41.13 Aligned_cols=85 Identities=14% Similarity=0.117 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHH
Q 023518 36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEE 115 (281)
Q Consensus 36 ~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 115 (281)
...++....+-...++.+++...+...-.+.|......+.-|..+...|+|.+|+..|+......|..+..+..+..|..
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 45677788888888999999999999999999999999999999999999999999999999999999988899999887
Q ss_pred HHHhh
Q 023518 116 RIAEE 120 (281)
Q Consensus 116 ~l~~~ 120 (281)
.+++.
T Consensus 90 ~~~D~ 94 (160)
T PF09613_consen 90 ALGDP 94 (160)
T ss_pred HcCCh
Confidence 66665
No 302
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.89 E-value=0.056 Score=46.90 Aligned_cols=76 Identities=17% Similarity=0.159 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHH
Q 023518 38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (281)
Q Consensus 38 ~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 113 (281)
...++=..|...++++.|+.+.++.+.++|.++.-+.-+|.+|.++|.+.-|+..++..+++.|+++.........
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3444556677778999999999999999999999999999999999999999999999999999998765444433
No 303
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.85 E-value=0.093 Score=37.95 Aligned_cols=65 Identities=17% Similarity=0.103 Sum_probs=49.5
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCC--hhHHHHHHHHHHHHHh
Q 023518 55 AVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD--SRFTNLIKECEERIAE 119 (281)
Q Consensus 55 A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~--~~~~~~l~~~~~~l~~ 119 (281)
.+..++.++..+|++..+.+.+|..+...|+|++|+..+-..++.+++. ...+..+-.+-..++.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4567889999999999999999999999999999999999999998765 4455555555444443
No 304
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=95.84 E-value=0.042 Score=39.48 Aligned_cols=68 Identities=15% Similarity=0.208 Sum_probs=54.0
Q ss_pred CCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcC--C----C------ceeeeccccccccccCcceEEE-eCcEEEEE
Q 023518 181 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP--G----E------EAYHFQPRLFGKIIPAKCRYEV-LSTKVEIR 247 (281)
Q Consensus 181 t~~~V~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~--~----~------~~~~~~~~L~~~I~~~~s~~~v-~~~kiei~ 247 (281)
..+.+.|.+-++|+.++++.|++..+.|.|+-... . + ..|.=.+.|...|+++..+..+ .++.+.|+
T Consensus 5 ~~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~ 84 (87)
T cd06481 5 GKEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLHIR 84 (87)
T ss_pred ccceEEEEEECCCCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceEEEE
Confidence 45788999999999999999999999999985321 1 1 2355567899999999888888 67778877
Q ss_pred E
Q 023518 248 L 248 (281)
Q Consensus 248 L 248 (281)
+
T Consensus 85 ~ 85 (87)
T cd06481 85 A 85 (87)
T ss_pred c
Confidence 5
No 305
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.83 E-value=0.33 Score=44.41 Aligned_cols=107 Identities=16% Similarity=0.071 Sum_probs=76.9
Q ss_pred HHHHHHHHH---hcCHHHHHHHHHH-HHhcCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHcCCCc---
Q 023518 6 EKKAKEAFI---DDYFELAYDLYSQ-AIEISPNSAELFADRAQASIKL---------QNFTEAVADANRAIELEPSM--- 69 (281)
Q Consensus 6 ~~~g~~~~~---~~~y~~Al~~y~~-al~~~p~~~~~~~~~a~~~~~l---------~~~~~A~~~~~~al~l~p~~--- 69 (281)
+..|.++.+ .|+.++|+..+.. .....+.+++.+...|.+|-.+ ...+.|+.+|.++.+++++.
T Consensus 183 ~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~G 262 (374)
T PF13281_consen 183 FQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSG 262 (374)
T ss_pred HHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccch
Confidence 466778888 8999999999998 4455677788888888888664 34788999999999887641
Q ss_pred ------------------------------------------HHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHH
Q 023518 70 ------------------------------------------SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT 107 (281)
Q Consensus 70 ------------------------------------------~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 107 (281)
...+-.++.+....|++++|..++++++++.|..=...
T Consensus 263 IN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~ 342 (374)
T PF13281_consen 263 INAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELE 342 (374)
T ss_pred HHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHH
Confidence 11112245556667889999999999999876544333
Q ss_pred HHHHH
Q 023518 108 NLIKE 112 (281)
Q Consensus 108 ~~l~~ 112 (281)
..+..
T Consensus 343 St~~n 347 (374)
T PF13281_consen 343 STLEN 347 (374)
T ss_pred HHHHH
Confidence 33333
No 306
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.81 E-value=0.071 Score=47.62 Aligned_cols=54 Identities=19% Similarity=0.040 Sum_probs=33.5
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 023518 42 RAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEK 95 (281)
Q Consensus 42 ~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~ 95 (281)
+|.++...|-|++|...+++++++++.+.-+...++.++.-.|++.++.+.+++
T Consensus 181 yaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 181 YAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 556666667777777777777777776655555555555555555555544443
No 307
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.79 E-value=0.092 Score=44.94 Aligned_cols=94 Identities=21% Similarity=0.270 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHc----C--CCcHHHH
Q 023518 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIEL----E--PSMSKAY 73 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~~p~~------~~~~~~~a~~~~~l~~~~~A~~~~~~al~l----~--p~~~~a~ 73 (281)
..++-...+..+.++|+.+|++++..-..+ .+++...++.+.++++|.+|-..+.+-..+ + ++..+++
T Consensus 114 leKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~ 193 (308)
T KOG1585|consen 114 LEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAY 193 (308)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHH
Confidence 344444555667777777777776653222 455666777777777777776655543322 1 3334455
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHhhhc
Q 023518 74 WRKATACMKLEEYETAKVALEKGASL 99 (281)
Q Consensus 74 ~~~g~~~~~~g~~~~A~~~~~~a~~~ 99 (281)
...-.+|+...+|..|..+++..-++
T Consensus 194 va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 194 VAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred HHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 55556666667777777777765554
No 308
>PLN03077 Protein ECB2; Provisional
Probab=95.74 E-value=0.12 Score=52.65 Aligned_cols=108 Identities=14% Similarity=0.127 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC--CcHHHHHHHHHH
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEI--SPNSAELFADRAQASIKLQNFTEAVADANRAIELEP--SMSKAYWRKATA 79 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~--~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p--~~~~a~~~~g~~ 79 (281)
.|......|...|+.++|+++|++..+. .|+... |..+-.++.+.|++++|...|+...+..+ .+...|..+..+
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T-~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~ 634 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT-FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDL 634 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc-HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 4556677888999999999999998774 566554 45555678889999999999999884332 244678889999
Q ss_pred HHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHH
Q 023518 80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (281)
Q Consensus 80 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 113 (281)
|.+.|++++|...+++. ...|+...+...+..|
T Consensus 635 l~r~G~~~eA~~~~~~m-~~~pd~~~~~aLl~ac 667 (857)
T PLN03077 635 LGRAGKLTEAYNFINKM-PITPDPAVWGALLNAC 667 (857)
T ss_pred HHhCCCHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Confidence 99999999999999886 3566544444444444
No 309
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.70 E-value=0.2 Score=45.86 Aligned_cols=78 Identities=15% Similarity=0.080 Sum_probs=65.5
Q ss_pred HHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------------CCC---------------cHHHHHHHHH
Q 023518 28 AIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL--------------EPS---------------MSKAYWRKAT 78 (281)
Q Consensus 28 al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l--------------~p~---------------~~~a~~~~g~ 78 (281)
.|..+|-+.+.++.++.++..+|++..|.+..++|+-. +.. ...+.++...
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 34568899999999999999999999999999988621 111 2557888899
Q ss_pred HHHHhhcHHHHHHHHHHhhhcCCC-Chh
Q 023518 79 ACMKLEEYETAKVALEKGASLAPG-DSR 105 (281)
Q Consensus 79 ~~~~~g~~~~A~~~~~~a~~~~p~-~~~ 105 (281)
.+.+.|.+..|.++++-.+.++|. |+-
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~ 139 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDEDPL 139 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCcc
Confidence 999999999999999999999999 553
No 310
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.64 E-value=0.14 Score=48.06 Aligned_cols=91 Identities=19% Similarity=0.165 Sum_probs=46.7
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-------C---C-----------
Q 023518 10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE-------P---S----------- 68 (281)
Q Consensus 10 ~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~-------p---~----------- 68 (281)
..+.+..+.+.-+++-.+||+.+|+-+++|+.+|.-. .....+|+..++++++.+ . .
T Consensus 176 q~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~R 253 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRR 253 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhcc
Confidence 3445566666666666666666666666655554421 112333333333333221 0 0
Q ss_pred ----cHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCC
Q 023518 69 ----MSKAYWRKATACMKLEEYETAKVALEKGASLAPG 102 (281)
Q Consensus 69 ----~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~ 102 (281)
..-+.+++|+|..++|+.++|++.|+..++..|.
T Consensus 254 dt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~ 291 (539)
T PF04184_consen 254 DTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN 291 (539)
T ss_pred ccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc
Confidence 0223445566666666666666666666655554
No 311
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.5 Score=40.93 Aligned_cols=105 Identities=10% Similarity=0.039 Sum_probs=87.5
Q ss_pred hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHH-HHHHH
Q 023518 15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ-NFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE-TAKVA 92 (281)
Q Consensus 15 ~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~-~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~-~A~~~ 92 (281)
...-+.|+.+-..+|+++|.+...|..|=.|+..++ +..+-+++++..++-+|.+..+|.-+-.+...+|++. .=+..
T Consensus 56 ~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef 135 (318)
T KOG0530|consen 56 NEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEF 135 (318)
T ss_pred cccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHH
Confidence 445589999999999999999999888888888775 6788899999999999999999999999999999888 77788
Q ss_pred HHHhhhcCCCChhHHHHHHHHHHHHHh
Q 023518 93 LEKGASLAPGDSRFTNLIKECEERIAE 119 (281)
Q Consensus 93 ~~~a~~~~p~~~~~~~~l~~~~~~l~~ 119 (281)
....+..+..+-.++.....|-...+.
T Consensus 136 ~~~~l~~DaKNYHaWshRqW~~r~F~~ 162 (318)
T KOG0530|consen 136 TKLMLDDDAKNYHAWSHRQWVLRFFKD 162 (318)
T ss_pred HHHHHhccccchhhhHHHHHHHHHHhh
Confidence 888999888777776666555444433
No 312
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=95.44 E-value=0.079 Score=47.60 Aligned_cols=65 Identities=25% Similarity=0.354 Sum_probs=54.8
Q ss_pred CCCeEEEEEEecCC-CCcceEEEEeeeEEEEEEEcCCCceeeeccccccccccCcceEEEeC--cEEEEEE
Q 023518 181 KPEEVVVTVFAKGI-PAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLS--TKVEIRL 248 (281)
Q Consensus 181 t~~~V~i~v~~k~~-~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~L~~~I~~~~s~~~v~~--~kiei~L 248 (281)
..+.+.|.|.+.|+ ...++.+++.++.|.|.+..+ .|.|++.|-.+|+++.++.+... ..+.|+|
T Consensus 259 ~p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~~---~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtl 326 (328)
T PF08190_consen 259 SPEELVVEIELPGVESASDIDLDVSEDRLSLSSPKP---KYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTL 326 (328)
T ss_pred CCceEEEEEECCCcCccceeEEEEeCCEEEEEeCCC---ceEEEccCCCcccCCCceEEEccCCCEEEEEE
Confidence 37889999999998 569999999999999998632 69999999999999988666555 4688887
No 313
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=95.23 E-value=0.053 Score=47.90 Aligned_cols=85 Identities=13% Similarity=0.110 Sum_probs=73.5
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHHhhcHHHHHHHHHHhhhcCCCC
Q 023518 25 YSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR-KATACMKLEEYETAKVALEKGASLAPGD 103 (281)
Q Consensus 25 y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~-~g~~~~~~g~~~~A~~~~~~a~~~~p~~ 103 (281)
|.++-...++++.+|...+....+.+-|.+--..|..++..+|.+.+.|.. .+.-++..++++.++..|+++++++|.+
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 444445568889999999999999999999999999999999999999887 5677788899999999999999999999
Q ss_pred hhHHHH
Q 023518 104 SRFTNL 109 (281)
Q Consensus 104 ~~~~~~ 109 (281)
+.+|..
T Consensus 176 p~iw~e 181 (435)
T COG5191 176 PRIWIE 181 (435)
T ss_pred chHHHH
Confidence 976543
No 314
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.22 E-value=0.29 Score=43.88 Aligned_cols=98 Identities=11% Similarity=-0.028 Sum_probs=81.9
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc-CCCcHH---HHHHHHHHHHHh
Q 023518 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL-EPSMSK---AYWRKATACMKL 83 (281)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l-~p~~~~---a~~~~g~~~~~~ 83 (281)
.+-.++-+|++-+|....++.|+-.|.+..++-.--.+++-+|+...-...+++.+-. +++.+- .+=-++.++..+
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC 188 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence 4455678899999999999999999999888888888888999999999999999876 776633 333356677788
Q ss_pred hcHHHHHHHHHHhhhcCCCChh
Q 023518 84 EEYETAKVALEKGASLAPGDSR 105 (281)
Q Consensus 84 g~~~~A~~~~~~a~~~~p~~~~ 105 (281)
|-|++|...-.+++++++.|.-
T Consensus 189 g~y~dAEk~A~ralqiN~~D~W 210 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQINRFDCW 210 (491)
T ss_pred ccchhHHHHHHhhccCCCcchH
Confidence 9999999999999999998764
No 315
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.18 E-value=0.57 Score=42.00 Aligned_cols=119 Identities=18% Similarity=0.134 Sum_probs=93.0
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--C-C-------
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISP----NSAELFADRAQASIKLQNFTEAVADANRAIEL--E-P------- 67 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p----~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l--~-p------- 67 (281)
+..+...+..+-+.|.|+.|...+.++...++ ..+.+.+..+..+...|+..+|+..++..+.. . .
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~ 225 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA 225 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH
Confidence 35677889999999999999999999988652 24678888999999999999999998887771 1 0
Q ss_pred ------------------------CcHHHHHHHHHHHHHh------hcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 023518 68 ------------------------SMSKAYWRKATACMKL------EEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (281)
Q Consensus 68 ------------------------~~~~a~~~~g~~~~~~------g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l 117 (281)
..+++++.+|.-...+ +.++++...|..+..++|.....+...+.....+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 226 ELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred HHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 1255777777777777 8888999999999999998877766666655555
Q ss_pred Hhh
Q 023518 118 AEE 120 (281)
Q Consensus 118 ~~~ 120 (281)
-..
T Consensus 306 ~~~ 308 (352)
T PF02259_consen 306 LES 308 (352)
T ss_pred HHh
Confidence 443
No 316
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.15 E-value=0.11 Score=46.92 Aligned_cols=94 Identities=16% Similarity=0.021 Sum_probs=75.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCC----C------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcC------CCc
Q 023518 6 EKKAKEAFIDDYFELAYDLYSQAIEISPN----S------AELFADRAQASIKLQNFTEAVADANRAIELE------PSM 69 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~~p~----~------~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~------p~~ 69 (281)
...|..+-..+||++|+-+..+|.++... + ...++.++.++.++|+...|.++++.+.++. +..
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ 245 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ 245 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence 45677788899999999999999887322 1 3457788899999999999999999988764 234
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhhhc
Q 023518 70 SKAYWRKATACMKLEEYETAKVALEKGASL 99 (281)
Q Consensus 70 ~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~ 99 (281)
.....-+|.+|..+|+.+.|..-|+.|...
T Consensus 246 arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 246 ARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 567777899999999999988888887653
No 317
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.11 E-value=0.11 Score=45.21 Aligned_cols=71 Identities=18% Similarity=0.198 Sum_probs=63.9
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 023518 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA 79 (281)
Q Consensus 9 g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~ 79 (281)
=..+.+.++++.|+..-.+.+.++|.++.-..-||.+|.++|-+.-|++++...++..|+.+.+-.-++..
T Consensus 188 k~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 188 KAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34577889999999999999999999999899999999999999999999999999999998776665543
No 318
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.96 E-value=0.34 Score=46.76 Aligned_cols=71 Identities=13% Similarity=0.140 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHH
Q 023518 37 ELFADRAQASIKLQNFTEAVADANRAIELEPS------MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT 107 (281)
Q Consensus 37 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~------~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 107 (281)
.++.+-|.-++++++|..++++|...++.-|. .++.+..++.||..+.+.+.|.++++.|-+++|.+.-.+
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q 431 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQ 431 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHH
Confidence 45778899999999999999999999986553 478899999999999999999999999999999877443
No 319
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=94.81 E-value=0.16 Score=36.52 Aligned_cols=66 Identities=17% Similarity=0.090 Sum_probs=51.5
Q ss_pred CCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcC--C---C-ce-----eeeccccccccccCcceEEEeCc-EEEE
Q 023518 181 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP--G---E-EA-----YHFQPRLFGKIIPAKCRYEVLST-KVEI 246 (281)
Q Consensus 181 t~~~V~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~--~---~-~~-----~~~~~~L~~~I~~~~s~~~v~~~-kiei 246 (281)
.++.++|++-++|+.++++.|.+..+.|+|+-... . + .. |.=.+.|...|++++-+.+..++ .+.|
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i 83 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKI 83 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEE
Confidence 46789999999999999999999999999996431 1 1 12 33456788999999888888887 6655
No 320
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.78 E-value=0.23 Score=36.04 Aligned_cols=56 Identities=20% Similarity=0.253 Sum_probs=31.0
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Q 023518 11 EAFIDDYFELAYDLYSQAIEISPNS---------AELFADRAQASIKLQNFTEAVADANRAIELE 66 (281)
Q Consensus 11 ~~~~~~~y~~Al~~y~~al~~~p~~---------~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 66 (281)
.....+||.+|++.+.+.++..... ..+++++|.++...|++++|+..++.|+++.
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3455666666666666655542111 2344555666666666666666666666544
No 321
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.77 E-value=1.1 Score=41.70 Aligned_cols=112 Identities=18% Similarity=0.177 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhcC-HHHHHHHHHHHHhcCCCCHHH---------------------------------------------
Q 023518 5 LEKKAKEAFIDDY-FELAYDLYSQAIEISPNSAEL--------------------------------------------- 38 (281)
Q Consensus 5 l~~~g~~~~~~~~-y~~Al~~y~~al~~~p~~~~~--------------------------------------------- 38 (281)
+..-|..+.+.|. =++|+.++..+++..+.+...
T Consensus 382 L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~e 461 (549)
T PF07079_consen 382 LVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEE 461 (549)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHH
Confidence 4555666777776 677777777777776665211
Q ss_pred ---HHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcC-CCChhHHHHHHHHH
Q 023518 39 ---FADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLA-PGDSRFTNLIKECE 114 (281)
Q Consensus 39 ---~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 114 (281)
...=|..++..|+|.++.-...=..+.+| .+.++..+|.|++..++|.+|..++....--+ -.|..+...+.-|+
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n~~~~dskvqKAl~lCq 540 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPPNERMRDSKVQKALALCQ 540 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence 22233344455788888777777778888 78899999999999999999998887653211 01223344455555
Q ss_pred HHH
Q 023518 115 ERI 117 (281)
Q Consensus 115 ~~l 117 (281)
+.+
T Consensus 541 Kh~ 543 (549)
T PF07079_consen 541 KHL 543 (549)
T ss_pred Hhh
Confidence 443
No 322
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=94.66 E-value=1.3 Score=38.83 Aligned_cols=105 Identities=14% Similarity=-0.056 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcc-------CHHHHHHHHHHHHHcCCCcH
Q 023518 3 TDLEKKAKEAFI----DDYFELAYDLYSQAIEISPNS-AELFADRAQASIKLQ-------NFTEAVADANRAIELEPSMS 70 (281)
Q Consensus 3 ~~l~~~g~~~~~----~~~y~~Al~~y~~al~~~p~~-~~~~~~~a~~~~~l~-------~~~~A~~~~~~al~l~p~~~ 70 (281)
...+..|..+.. ..|+.+|..+|.++.+..... ....+.++.+|..-. +...|+..|.++.... +.
T Consensus 110 ~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~ 187 (292)
T COG0790 110 EALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NP 187 (292)
T ss_pred HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CH
Confidence 355667777776 559999999999999986544 344777888877641 3347888999888877 77
Q ss_pred HHHHHHHHHHHH----hhcHHHHHHHHHHhhhcCCCChhHHHHHH
Q 023518 71 KAYWRKATACMK----LEEYETAKVALEKGASLAPGDSRFTNLIK 111 (281)
Q Consensus 71 ~a~~~~g~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 111 (281)
.+.+.+|.+|.. ..++.+|..+|.++.+... .....++.
T Consensus 188 ~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 188 DAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 789999988865 3489999999999999876 33344444
No 323
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.56 E-value=0.45 Score=37.61 Aligned_cols=84 Identities=13% Similarity=0.049 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHH
Q 023518 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER 116 (281)
Q Consensus 37 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 116 (281)
..+.....+.+...+.+++...+...--+.|+.......-|..+...|+|.+|...|+...+-.+..+-.+..+..|...
T Consensus 11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA 90 (153)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence 45566666777789999999999998899999999999999999999999999999999998888878778888888776
Q ss_pred HHhh
Q 023518 117 IAEE 120 (281)
Q Consensus 117 l~~~ 120 (281)
+++.
T Consensus 91 l~Dp 94 (153)
T TIGR02561 91 KGDA 94 (153)
T ss_pred cCCh
Confidence 6664
No 324
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.55 E-value=0.98 Score=40.45 Aligned_cols=99 Identities=25% Similarity=0.125 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc-CC-C-------------------------C-------HHHHHHHHHHHHHc
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEI-SP-N-------------------------S-------AELFADRAQASIKL 49 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~-~p-~-------------------------~-------~~~~~~~a~~~~~l 49 (281)
..+..+..++..|+-.+|+..+...+.. .. . . +.++..+|.....+
T Consensus 186 v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~ 265 (352)
T PF02259_consen 186 VFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDEL 265 (352)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhh
Confidence 4567789999999999999999888881 11 0 1 34566666666666
Q ss_pred ------cCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcH-----------------HHHHHHHHHhhhcCCC
Q 023518 50 ------QNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY-----------------ETAKVALEKGASLAPG 102 (281)
Q Consensus 50 ------~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~-----------------~~A~~~~~~a~~~~p~ 102 (281)
+.+++++..|..++.++|...++|+..|..+..+-+. ..|+.+|-+++.+.+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 266 YSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred ccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 7788899999999999999999999999888775322 3477888888888776
No 325
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=94.42 E-value=0.62 Score=48.79 Aligned_cols=98 Identities=14% Similarity=0.066 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPN--SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~--~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (281)
.|...|..+++..+-+.|..++.+||..-|. +.++....|+.-++.|+-+.+...|+..+..+|...+.|.-+...-.
T Consensus 1566 vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~ei 1645 (1710)
T KOG1070|consen 1566 VWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEI 1645 (1710)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHH
Confidence 5778899999999999999999999999988 78899999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhhcCC
Q 023518 82 KLEEYETAKVALEKGASLAP 101 (281)
Q Consensus 82 ~~g~~~~A~~~~~~a~~~~p 101 (281)
+.|+-+-++..|++++.+.=
T Consensus 1646 k~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1646 KHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred ccCCHHHHHHHHHHHHhcCC
Confidence 99999999999999988753
No 326
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.42 E-value=0.1 Score=31.06 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Q 023518 38 LFADRAQASIKLQNFTEAVADANRAIE 64 (281)
Q Consensus 38 ~~~~~a~~~~~l~~~~~A~~~~~~al~ 64 (281)
.+.++|.+|..+|++++|+..+++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 445555555555555555555555554
No 327
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.42 E-value=0.57 Score=36.46 Aligned_cols=74 Identities=14% Similarity=0.117 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhc---CHHHHHHHHHHHHh-cCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 023518 4 DLEKKAKEAFIDD---YFELAYDLYSQAIE-ISPN-SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77 (281)
Q Consensus 4 ~l~~~g~~~~~~~---~y~~Al~~y~~al~-~~p~-~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g 77 (281)
..|+.+.++.... +-++-+.++...++ ..|. .-+..+.+|..|+++++|+.++.+.+..++..|++..+.-..-
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~ 112 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKE 112 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 4566677776544 46778889999986 4444 3578899999999999999999999999999999977655443
No 328
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.34 E-value=0.93 Score=41.53 Aligned_cols=93 Identities=13% Similarity=-0.008 Sum_probs=74.5
Q ss_pred HHHHHhcCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHH---ccCHHHHHHHHHHHH-HcCCCcHHHHHHHHHHHH
Q 023518 10 KEAFIDDYFELAYDLYSQAIEI----SPNSAELFADRAQASIK---LQNFTEAVADANRAI-ELEPSMSKAYWRKATACM 81 (281)
Q Consensus 10 ~~~~~~~~y~~Al~~y~~al~~----~p~~~~~~~~~a~~~~~---l~~~~~A~~~~~~al-~l~p~~~~a~~~~g~~~~ 81 (281)
..|-..++|+.-+++.+..-.. -++.......+|.++.+ .|+.++|+..+..++ ...+.+++.+..+|.+|.
T Consensus 149 lSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyK 228 (374)
T PF13281_consen 149 LSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYK 228 (374)
T ss_pred HHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 3455678899988888876665 45567778889999999 899999999999854 555678888999998887
Q ss_pred Hh---------hcHHHHHHHHHHhhhcCCC
Q 023518 82 KL---------EEYETAKVALEKGASLAPG 102 (281)
Q Consensus 82 ~~---------g~~~~A~~~~~~a~~~~p~ 102 (281)
.+ ...++|+.+|.++.+.+|+
T Consensus 229 D~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~ 258 (374)
T PF13281_consen 229 DLFLESNFTDRESLDKAIEWYRKGFEIEPD 258 (374)
T ss_pred HHHHHcCccchHHHHHHHHHHHHHHcCCcc
Confidence 64 3578999999999999864
No 329
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.19 E-value=2.4 Score=37.15 Aligned_cols=100 Identities=13% Similarity=0.040 Sum_probs=71.6
Q ss_pred hhHHHHHHHHHHHhc-CHHHHHHHHHHHHhc----CCCC----------HHHHHHHHHHHHHccCHHH---HHHHHHHHH
Q 023518 2 ATDLEKKAKEAFIDD-YFELAYDLYSQAIEI----SPNS----------AELFADRAQASIKLQNFTE---AVADANRAI 63 (281)
Q Consensus 2 a~~l~~~g~~~~~~~-~y~~Al~~y~~al~~----~p~~----------~~~~~~~a~~~~~l~~~~~---A~~~~~~al 63 (281)
++.+++.|..++..+ +|+.|+.+++++++. .... ...+..++.+|+..+.++. |....+.+-
T Consensus 35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~ 114 (278)
T PF08631_consen 35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLE 114 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 467788999999999 999999999999888 2211 3457778889988877554 344444444
Q ss_pred HcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCC
Q 023518 64 ELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP 101 (281)
Q Consensus 64 ~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p 101 (281)
...|+.+..++..-.++...++.+.+...+.+.+..-+
T Consensus 115 ~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 115 SEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 45576666665544555557888888888888877544
No 330
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.14 E-value=0.1 Score=31.06 Aligned_cols=29 Identities=28% Similarity=0.202 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhhhc
Q 023518 71 KAYWRKATACMKLEEYETAKVALEKGASL 99 (281)
Q Consensus 71 ~a~~~~g~~~~~~g~~~~A~~~~~~a~~~ 99 (281)
.++..+|.+|..+|+|++|..++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 56788999999999999999999998875
No 331
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=94.09 E-value=0.42 Score=33.98 Aligned_cols=68 Identities=7% Similarity=-0.009 Sum_probs=51.7
Q ss_pred cCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcC---CCc-----eeeeccccccccccCcceEEE-eCcEEEEE
Q 023518 180 QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GEE-----AYHFQPRLFGKIIPAKCRYEV-LSTKVEIR 247 (281)
Q Consensus 180 Qt~~~V~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~---~~~-----~~~~~~~L~~~I~~~~s~~~v-~~~kiei~ 247 (281)
-+++...|.+-+.|+.+++++|++..+.|+|+-... ++. .|.=.+.|...|+++.-+.+. .++.+.|.
T Consensus 4 e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~ 80 (83)
T cd06477 4 EGKPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVE 80 (83)
T ss_pred cCCceEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEE
Confidence 356788899999999999999999999999996421 111 244456788999999888876 46666664
No 332
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.98 E-value=0.78 Score=42.01 Aligned_cols=91 Identities=19% Similarity=0.210 Sum_probs=72.1
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHH--HHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 023518 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRA--QASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a--~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~ 83 (281)
.-.++..+-.|+|+.|.+.|+..++ +|..- .+-.|| ....++|.++.|..+..++....|...-++...-......
T Consensus 124 lLeAQaal~eG~~~~Ar~kfeAMl~-dPEtR-llGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~ 201 (531)
T COG3898 124 LLEAQAALLEGDYEDARKKFEAMLD-DPETR-LLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAA 201 (531)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHhc-ChHHH-HHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhc
Confidence 4467888899999999999998775 45432 223333 3334579999999999999999999988888888888899
Q ss_pred hcHHHHHHHHHHhhh
Q 023518 84 EEYETAKVALEKGAS 98 (281)
Q Consensus 84 g~~~~A~~~~~~a~~ 98 (281)
|+|+.|++..+....
T Consensus 202 gdWd~AlkLvd~~~~ 216 (531)
T COG3898 202 GDWDGALKLVDAQRA 216 (531)
T ss_pred CChHHHHHHHHHHHH
Confidence 999999998876544
No 333
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=93.94 E-value=0.22 Score=39.22 Aligned_cols=50 Identities=24% Similarity=0.203 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhc
Q 023518 36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE 85 (281)
Q Consensus 36 ~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~ 85 (281)
.+..+.+|..++..|+|.-|...++.++..+|++..+...++.+|.++|.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 34455555555555666666666666666666665565556666655554
No 334
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.70 E-value=0.32 Score=35.27 Aligned_cols=58 Identities=22% Similarity=0.311 Sum_probs=46.6
Q ss_pred HHHHHccCHHHHHHHHHHHHHcCCC---------cHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCC
Q 023518 44 QASIKLQNFTEAVADANRAIELEPS---------MSKAYWRKATACMKLEEYETAKVALEKGASLAP 101 (281)
Q Consensus 44 ~~~~~l~~~~~A~~~~~~al~l~p~---------~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p 101 (281)
.-.++.++|.+|++.+.+.+..... ...+.+.+|..+...|++++|...+++++++..
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3445789999998888887765321 245778899999999999999999999998753
No 335
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.47 E-value=1.2 Score=39.18 Aligned_cols=64 Identities=22% Similarity=0.177 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhc
Q 023518 36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (281)
Q Consensus 36 ~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~ 99 (281)
..++..++..+...++++.++..+++.+.++|.+-.+|.++-.+|+..|+...|+..|++..+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4567778888888899999999999999999999999999999999999999999999988774
No 336
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.39 E-value=2.1 Score=35.48 Aligned_cols=59 Identities=19% Similarity=0.161 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHhhcHHHHHHHHHHh
Q 023518 38 LFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWRKATACMKLEEYETAKVALEKG 96 (281)
Q Consensus 38 ~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~a 96 (281)
..+.+|..+...+++++|+..++.++..-.+. ..+-+|+|.+++.+|++++|+..+...
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~ 152 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTI 152 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc
Confidence 45668888889999999999999998654432 457789999999999999999988654
No 337
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.33 E-value=1.7 Score=42.29 Aligned_cols=88 Identities=18% Similarity=0.183 Sum_probs=59.9
Q ss_pred HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-----cHHHHHHHHHHHHHhhcHHH
Q 023518 14 IDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS-----MSKAYWRKATACMKLEEYET 88 (281)
Q Consensus 14 ~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~-----~~~a~~~~g~~~~~~g~~~~ 88 (281)
.-|-++..-..|++.+++---.+..-.|.|..+....-|+++.+.|++.+.+.+- ...-|+...+.-+.-...+.
T Consensus 489 s~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 489 SLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred HhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence 3455666666777777776666777777777777777777777777777777642 23445556666666667777
Q ss_pred HHHHHHHhhhcCC
Q 023518 89 AKVALEKGASLAP 101 (281)
Q Consensus 89 A~~~~~~a~~~~p 101 (281)
|+..|++|++..|
T Consensus 569 aRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 569 ARDLFEQALDGCP 581 (835)
T ss_pred HHHHHHHHHhcCC
Confidence 7777777777766
No 338
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.25 E-value=2 Score=37.72 Aligned_cols=97 Identities=22% Similarity=0.218 Sum_probs=71.5
Q ss_pred HHHHhcCHHHHHHHHHHHHhcC----CCC----HHHHHHHHHHHHHcc-CHHHHHHHHHHHHHc----CCC---------
Q 023518 11 EAFIDDYFELAYDLYSQAIEIS----PNS----AELFADRAQASIKLQ-NFTEAVADANRAIEL----EPS--------- 68 (281)
Q Consensus 11 ~~~~~~~y~~Al~~y~~al~~~----p~~----~~~~~~~a~~~~~l~-~~~~A~~~~~~al~l----~p~--------- 68 (281)
.+.+.||++.|..+|.++-... |+. ...+++.|...+..+ ++++|..++++|+.+ ...
T Consensus 2 ~A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 2 LAWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred cchhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 3568899999999999996654 332 467888999999999 999999999999987 321
Q ss_pred -cHHHHHHHHHHHHHhhcHH---HHHHHHHHhhhcCCCChhHH
Q 023518 69 -MSKAYWRKATACMKLEEYE---TAKVALEKGASLAPGDSRFT 107 (281)
Q Consensus 69 -~~~a~~~~g~~~~~~g~~~---~A~~~~~~a~~~~p~~~~~~ 107 (281)
....+..++.+|...+.++ +|...++.+....|+.+...
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~ 124 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF 124 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 2446677888888887765 45555555655666656544
No 339
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.21 E-value=0.88 Score=42.75 Aligned_cols=95 Identities=14% Similarity=0.053 Sum_probs=75.8
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHH
Q 023518 10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETA 89 (281)
Q Consensus 10 ~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A 89 (281)
...+..||.-.|-+....+|+..|.++.....++.+...+|.|+.+.+++..+-..-..-..+...+-..++.+|+++.|
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence 34567899999999999999999999999999999999999999999988766654444445556666788899999999
Q ss_pred HHHHHHhhhcCCCCh
Q 023518 90 KVALEKGASLAPGDS 104 (281)
Q Consensus 90 ~~~~~~a~~~~p~~~ 104 (281)
...-.-.+.-+-.++
T Consensus 377 ~s~a~~~l~~eie~~ 391 (831)
T PRK15180 377 LSTAEMMLSNEIEDE 391 (831)
T ss_pred HHHHHHHhccccCCh
Confidence 887776665444443
No 340
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.06 E-value=1.7 Score=41.75 Aligned_cols=99 Identities=19% Similarity=0.044 Sum_probs=79.6
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHH-HHHHHcCCCcHHHHHHH------HHHHHH
Q 023518 10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADA-NRAIELEPSMSKAYWRK------ATACMK 82 (281)
Q Consensus 10 ~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~-~~al~l~p~~~~a~~~~------g~~~~~ 82 (281)
..+...++...+.-....++..+|++..++.++|.+....|....++..+ ..+....|.+.....-+ |.....
T Consensus 75 i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (620)
T COG3914 75 ILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKL 154 (620)
T ss_pred hhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHH
Confidence 33445667778888899999999999999999999999988766665554 45889999887665555 888888
Q ss_pred hhcHHHHHHHHHHhhhcCCCChhHHH
Q 023518 83 LEEYETAKVALEKGASLAPGDSRFTN 108 (281)
Q Consensus 83 ~g~~~~A~~~~~~a~~~~p~~~~~~~ 108 (281)
+|+.+++..++.++..+.|.++....
T Consensus 155 l~~~~~~~~~l~~~~d~~p~~~~~~~ 180 (620)
T COG3914 155 LGRTAEAELALERAVDLLPKYPRVLG 180 (620)
T ss_pred hccHHHHHHHHHHHHHhhhhhhhhHh
Confidence 89999999999999999998876533
No 341
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.04 E-value=1.6 Score=42.42 Aligned_cols=90 Identities=17% Similarity=0.051 Sum_probs=50.0
Q ss_pred HHHHHHHHh----c-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 023518 7 KKAKEAFID----D-YFELAYDLYSQAIEISPNSAELFADRAQASIKLQ---NFTEAVADANRAIELEPSMSKAYWRKAT 78 (281)
Q Consensus 7 ~~g~~~~~~----~-~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~---~~~~A~~~~~~al~l~p~~~~a~~~~g~ 78 (281)
..|..|++. . |+..|+.+|.++-+.. ++.+.+.+|.+|..-. ++..|..+|..|...+. ..+.+++|.
T Consensus 293 ~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~--~~A~~~la~ 368 (552)
T KOG1550|consen 293 GLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH--ILAIYRLAL 368 (552)
T ss_pred HHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC--hHHHHHHHH
Confidence 345555542 2 5566666666666553 3344555566665543 45566666666655442 345666666
Q ss_pred HHHHh----hcHHHHHHHHHHhhhcC
Q 023518 79 ACMKL----EEYETAKVALEKGASLA 100 (281)
Q Consensus 79 ~~~~~----g~~~~A~~~~~~a~~~~ 100 (281)
||..- .+...|..++.++.+.+
T Consensus 369 ~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 369 CYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 55532 35666666666666665
No 342
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=93.01 E-value=0.36 Score=46.21 Aligned_cols=71 Identities=20% Similarity=0.145 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHH
Q 023518 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR 75 (281)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~ 75 (281)
+.+.|+.+...+-..+|-.++.++|.++...+..++-+|++|+.+++.+.|++.++.|+.++|++..+.-.
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~ 715 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENS 715 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHH
Confidence 46788889999989999999999999998889999999999999999999999999999999998765543
No 343
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.60 E-value=0.21 Score=29.85 Aligned_cols=28 Identities=25% Similarity=0.504 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHc
Q 023518 38 LFADRAQASIKLQNFTEAVADANRAIEL 65 (281)
Q Consensus 38 ~~~~~a~~~~~l~~~~~A~~~~~~al~l 65 (281)
.|..+|.+-+..++|.+|+.+|.+++.+
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3444555555555555555555555543
No 344
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=92.51 E-value=0.39 Score=28.29 Aligned_cols=32 Identities=13% Similarity=0.024 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHH--HhhhcCCC
Q 023518 71 KAYWRKATACMKLEEYETAKVALE--KGASLAPG 102 (281)
Q Consensus 71 ~a~~~~g~~~~~~g~~~~A~~~~~--~a~~~~p~ 102 (281)
+.++.+|..++..|+|++|+..|+ -+..+++.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 345566666666666666666633 55555443
No 345
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=92.47 E-value=4.9 Score=39.27 Aligned_cols=115 Identities=20% Similarity=0.160 Sum_probs=91.6
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-------------------HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS-------------------AELFADRAQASIKLQNFTEAVADANRA 62 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~-------------------~~~~~~~a~~~~~l~~~~~A~~~~~~a 62 (281)
|..|..-|..-+..++++.|+.+.++|... |.+ ..+|...+.....+|-++.....|++.
T Consensus 425 a~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdri 503 (835)
T KOG2047|consen 425 AEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRI 503 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 456677788888899999999999998865 222 345777788888889999999999999
Q ss_pred HHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 023518 63 IELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (281)
Q Consensus 63 l~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l 117 (281)
+.+.--.+....+.|.-+....-+++|.+.|++.+.+.+=.-.+-.|..-+..-+
T Consensus 504 idLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi 558 (835)
T KOG2047|consen 504 IDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFI 558 (835)
T ss_pred HHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHH
Confidence 9999888889999999999999999999999999998765444444444443333
No 346
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=92.43 E-value=2.5 Score=37.97 Aligned_cols=54 Identities=11% Similarity=0.177 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHH
Q 023518 20 LAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAY 73 (281)
Q Consensus 20 ~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~ 73 (281)
.-+.+|.+||+.+|++..++..+-.+..++.+-++...-+++++..+|++...|
T Consensus 49 ~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW 102 (321)
T PF08424_consen 49 RKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELW 102 (321)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHH
Confidence 344445555555555554444444444444444444444555555544443333
No 347
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.42 E-value=2.2 Score=41.44 Aligned_cols=95 Identities=17% Similarity=-0.041 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHhc---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 023518 4 DLEKKAKEAFIDD---YFELAYDLYSQAIEISPNSAELFADRAQASIKL----QNFTEAVADANRAIELEPSMSKAYWRK 76 (281)
Q Consensus 4 ~l~~~g~~~~~~~---~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l----~~~~~A~~~~~~al~l~p~~~~a~~~~ 76 (281)
..+..|..++... |+..|.++|..|.+.. +..+++++|.||..- .+...|..++.++.+.+ .+.+.+.+
T Consensus 327 a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~ 402 (552)
T KOG1550|consen 327 AQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLL 402 (552)
T ss_pred HHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHH
Confidence 4455666666543 6788999998888764 567788888888763 47888999999988888 45556666
Q ss_pred HHHHHHh-hcHHHHHHHHHHhhhcCCC
Q 023518 77 ATACMKL-EEYETAKVALEKGASLAPG 102 (281)
Q Consensus 77 g~~~~~~-g~~~~A~~~~~~a~~~~p~ 102 (281)
+..+... +.+..+...+.....+.-.
T Consensus 403 ~~~~~~g~~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 403 GAFYEYGVGRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHHHHccccccHHHHHHHHHHHhhhh
Confidence 6555443 7777777766666555443
No 348
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=92.24 E-value=4.2 Score=37.45 Aligned_cols=92 Identities=18% Similarity=0.139 Sum_probs=67.8
Q ss_pred HHHhcCHHHHHHHHHHHHhcC---CCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 023518 12 AFIDDYFELAYDLYSQAIEIS---PNS-----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 12 ~~~~~~y~~Al~~y~~al~~~---p~~-----~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~ 83 (281)
....|+|+.|+++.+...... ++- +.++...+..... -+...|..+...++++.|+..-+-.--+.++++.
T Consensus 198 r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld-adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d 276 (531)
T COG3898 198 RCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD-ADPASARDDALEANKLAPDLVPAAVVAARALFRD 276 (531)
T ss_pred HHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhc
Confidence 456788888888877655431 211 2233333333332 3577888888999999999988888899999999
Q ss_pred hcHHHHHHHHHHhhhcCCCCh
Q 023518 84 EEYETAKVALEKGASLAPGDS 104 (281)
Q Consensus 84 g~~~~A~~~~~~a~~~~p~~~ 104 (281)
|+..++-..++.+.+.+|+-.
T Consensus 277 ~~~rKg~~ilE~aWK~ePHP~ 297 (531)
T COG3898 277 GNLRKGSKILETAWKAEPHPD 297 (531)
T ss_pred cchhhhhhHHHHHHhcCCChH
Confidence 999999999999999998644
No 349
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=92.22 E-value=1 Score=36.62 Aligned_cols=75 Identities=20% Similarity=0.239 Sum_probs=55.1
Q ss_pred cccccCCC-eEEEEEEecCCCCcc-eEEEEeeeEEEEEEEcCCCceeeeccccccccccCcceEEEeCcEEEEEEeecCC
Q 023518 176 HEFYQKPE-EVVVTVFAKGIPAKN-VTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP 253 (281)
Q Consensus 176 ~~w~Qt~~-~V~i~v~~k~~~~~~-~~v~~~~~~l~~~~~~~~~~~~~~~~~L~~~I~~~~s~~~v~~~kiei~L~K~~~ 253 (281)
.+=.+.++ +++|.-=+.||..++ +.|++..+...|.+... ..|.=.+.|..+ .++...+++.+.-+||.|+|.+.
T Consensus 94 vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~--~~~~krv~L~~~-~~e~~~~t~nNgILEIri~~~~~ 170 (177)
T PF05455_consen 94 VDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRVG--EKYLKRVALPWP-DPEITSATFNNGILEIRIRRTEE 170 (177)
T ss_pred eeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEecC--CceEeeEecCCC-ccceeeEEEeCceEEEEEeecCC
Confidence 34445555 677766789998877 88998877666665433 346567888888 46666889999999999999764
No 350
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=91.94 E-value=0.72 Score=32.06 Aligned_cols=30 Identities=30% Similarity=0.220 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~ 31 (281)
|..+..+|..+-..|+|++|+.+|+++++.
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 556777788888888888877777776654
No 351
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=91.92 E-value=1.1 Score=42.12 Aligned_cols=62 Identities=15% Similarity=0.216 Sum_probs=54.5
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHcCCCcHHHHH
Q 023518 13 FIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQN-FTEAVADANRAIELEPSMSKAYW 74 (281)
Q Consensus 13 ~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~-~~~A~~~~~~al~l~p~~~~a~~ 74 (281)
-+.+.|.+--..|.+++..+|+++++|+.-|.-.+..+. .+.|.+.+.++++.+|+.++.|.
T Consensus 116 kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 116 KKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWK 178 (568)
T ss_pred HHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHH
Confidence 344459999999999999999999999999998888775 99999999999999999877554
No 352
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=91.89 E-value=2 Score=39.26 Aligned_cols=98 Identities=13% Similarity=0.120 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CH-HHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-----CcHHHHHHH
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPN-SA-ELFADRAQASIKLQNFTEAVADANRAIELEP-----SMSKAYWRK 76 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~-~~-~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p-----~~~~a~~~~ 76 (281)
.++.....+.++|-|..|++...-.+.++|. |+ .+++.+-...++.++|+--+..++....... ..+..-|..
T Consensus 105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~ 184 (360)
T PF04910_consen 105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSI 184 (360)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHH
Confidence 4567788889999999999999999999999 65 3444455556667888877777776554211 123566889
Q ss_pred HHHHHHhhcH---------------HHHHHHHHHhhhcCC
Q 023518 77 ATACMKLEEY---------------ETAKVALEKGASLAP 101 (281)
Q Consensus 77 g~~~~~~g~~---------------~~A~~~~~~a~~~~p 101 (281)
+.+++.+++- +.|...+++|+...|
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 9999999998 899999999999887
No 353
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=91.73 E-value=1.3 Score=37.51 Aligned_cols=61 Identities=21% Similarity=0.192 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcH-HHHHHHH
Q 023518 17 YFELAYDLYSQAIEISPN------SAELFADRAQASIKLQNFTEAVADANRAIELEPSMS-KAYWRKA 77 (281)
Q Consensus 17 ~y~~Al~~y~~al~~~p~------~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~-~a~~~~g 77 (281)
=+..|++.|.+++..... ...+++.+|..+.++|++++|+.+|.+++....... .....+|
T Consensus 140 fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~A 207 (214)
T PF09986_consen 140 FLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMA 207 (214)
T ss_pred HHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHH
Confidence 367788888888876432 257888999999999999999999999997664432 2444444
No 354
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=91.38 E-value=4.9 Score=30.72 Aligned_cols=81 Identities=15% Similarity=0.116 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHc--cCHHHHHHHHHHHHHcCCC------------cHHHHHHHHHHHHHhhcHHHHHHHHHHhhhc---
Q 023518 37 ELFADRAQASIKL--QNFTEAVADANRAIELEPS------------MSKAYWRKATACMKLEEYETAKVALEKGASL--- 99 (281)
Q Consensus 37 ~~~~~~a~~~~~l--~~~~~A~~~~~~al~l~p~------------~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~--- 99 (281)
..|..++..-.++ |-|++|...+++|...... ++-++-.++.++..+|+|++++..-.+++..
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence 3455555554444 6899999999999976532 4668888999999999999998877777653
Q ss_pred --CCCChhHHHHHHHHHHHH
Q 023518 100 --APGDSRFTNLIKECEERI 117 (281)
Q Consensus 100 --~p~~~~~~~~l~~~~~~l 117 (281)
+-+...-..|+..+-.+-
T Consensus 88 RGEL~qdeGklWIaaVfsra 107 (144)
T PF12968_consen 88 RGELHQDEGKLWIAAVFSRA 107 (144)
T ss_dssp H--TTSTHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHH
Confidence 223455678877765543
No 355
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.23 E-value=0.28 Score=26.42 Aligned_cols=23 Identities=22% Similarity=0.108 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHH
Q 023518 72 AYWRKATACMKLEEYETAKVALE 94 (281)
Q Consensus 72 a~~~~g~~~~~~g~~~~A~~~~~ 94 (281)
+++.+|.++..+|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 44555666666666666655543
No 356
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.19 E-value=0.84 Score=42.24 Aligned_cols=98 Identities=20% Similarity=0.143 Sum_probs=66.4
Q ss_pred ChhHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----------CCCCHHHHHHHHHHHHHccC----------HHHHHHHH
Q 023518 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEI-----------SPNSAELFADRAQASIKLQN----------FTEAVADA 59 (281)
Q Consensus 1 ma~~l~~~g~~~~~~~~y~~Al~~y~~al~~-----------~p~~~~~~~~~a~~~~~l~~----------~~~A~~~~ 59 (281)
|+-.+..+|.+++..+.|.+|+.++-.|=+. -.+-+..-+.+-+||+++++ ...|...|
T Consensus 162 mglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf 241 (568)
T KOG2561|consen 162 MGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGF 241 (568)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhh
Confidence 5667888999999999999999887665443 22334455567889998865 23333333
Q ss_pred HHHHHcC---------CCc------HHHHHHHHHHHHHhhcHHHHHHHHHHhhh
Q 023518 60 NRAIELE---------PSM------SKAYWRKATACMKLEEYETAKVALEKGAS 98 (281)
Q Consensus 60 ~~al~l~---------p~~------~~a~~~~g~~~~~~g~~~~A~~~~~~a~~ 98 (281)
.++..-+ +.. ...++.-|+..|+.|+-++|..+|+.+..
T Consensus 242 ~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 242 ERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred hhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3333211 111 22444569999999999999999988765
No 357
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=91.17 E-value=1 Score=38.97 Aligned_cols=45 Identities=20% Similarity=0.084 Sum_probs=26.9
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhc
Q 023518 55 AVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (281)
Q Consensus 55 A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~ 99 (281)
|+.+|.+|+.+.|.++..|..+|.++...|+.-.|+.+|-+++-.
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~ 45 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV 45 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhc
Confidence 455666666666666666666666666666666666666666543
No 358
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=90.94 E-value=3.9 Score=36.74 Aligned_cols=53 Identities=15% Similarity=0.118 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChh
Q 023518 53 TEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR 105 (281)
Q Consensus 53 ~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 105 (281)
+..+..+++|++.+|++...++.+=.++....+-++...-+++++..+|++..
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~ 100 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPE 100 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChH
Confidence 44455555566666666555555555555555555556666666666665544
No 359
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.80 E-value=1.6 Score=38.37 Aligned_cols=62 Identities=13% Similarity=0.100 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL 65 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 65 (281)
.+...+..+...++++.+++.+.+.+..+|-+-..|..+..+|++.|+...|+..|++.-..
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 45567888888999999999999999999999999999999999999999999999987764
No 360
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=90.74 E-value=1.9 Score=31.15 Aligned_cols=69 Identities=14% Similarity=0.088 Sum_probs=51.9
Q ss_pred cCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcC----CC----ceeeeccccccccccCcceEEEe-CcEEEEEE
Q 023518 180 QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP----GE----EAYHFQPRLFGKIIPAKCRYEVL-STKVEIRL 248 (281)
Q Consensus 180 Qt~~~V~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~----~~----~~~~~~~~L~~~I~~~~s~~~v~-~~kiei~L 248 (281)
-+++.-.|.+-++|..++++.|++..+.|.|+-... .+ ..|.-.+.|-..|+++.-+-.+. ++.+.|..
T Consensus 12 ~~~~~f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 12 NSSEPWKVCVNVHSFKPEELTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred CCCCcEEEEEEeCCCCHHHcEEEEECCEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEEEEc
Confidence 455667788889999999999999999999985422 11 12555667999999998888888 55666653
No 361
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=90.47 E-value=2.5 Score=42.43 Aligned_cols=96 Identities=16% Similarity=0.076 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH----------hcCCCC----------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAI----------EISPNS----------AELFADRAQASIKLQNFTEAVADANRAI 63 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al----------~~~p~~----------~~~~~~~a~~~~~l~~~~~A~~~~~~al 63 (281)
.+++.|.-+-..+|-..|+++|.++- ..+|.. ..+|.--|+.+...|+++.|+..|..|-
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 46677777888889999999988752 223432 4556667888888899999999988775
Q ss_pred Hc---------------------CCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhc
Q 023518 64 EL---------------------EPSMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (281)
Q Consensus 64 ~l---------------------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~ 99 (281)
.- ...+..+-|-+|..|...|++.+|+..|.+|..+
T Consensus 940 D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 940 DYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred hhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 42 1245667888999999999999999988887554
No 362
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=90.44 E-value=0.75 Score=39.21 Aligned_cols=107 Identities=19% Similarity=0.161 Sum_probs=65.5
Q ss_pred HHhcCHHHHHHHHHHHHhcC---CCC---------HHHHHHHHHHHHHccC-HHHH-HHHHHHHHH-cC-CCc--HHHHH
Q 023518 13 FIDDYFELAYDLYSQAIEIS---PNS---------AELFADRAQASIKLQN-FTEA-VADANRAIE-LE-PSM--SKAYW 74 (281)
Q Consensus 13 ~~~~~y~~Al~~y~~al~~~---p~~---------~~~~~~~a~~~~~l~~-~~~A-~~~~~~al~-l~-p~~--~~a~~ 74 (281)
+.-|+|+.|++...-||+.+ |++ ++-...-|......|+ ++-. ...+..... .+ |+. ++.|-
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~K 173 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLYK 173 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 56799999999999999985 322 1223333444444444 1111 112222211 11 333 33444
Q ss_pred HHHHHHH---------HhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 75 RKATACM---------KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 75 ~~g~~~~---------~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
..|..++ ..++...|+.+|++|+.++|+ ..++..+.++..+++..
T Consensus 174 ~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k-~GVK~~i~~l~~~lr~~ 227 (230)
T PHA02537 174 AAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK-CGVKKDIERLERRLKAL 227 (230)
T ss_pred HHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHhhc
Confidence 4555553 346788999999999999974 56788889998888754
No 363
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=90.43 E-value=0.58 Score=41.56 Aligned_cols=67 Identities=9% Similarity=0.182 Sum_probs=56.6
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHH
Q 023518 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFAD-RAQASIKLQNFTEAVADANRAIELEPSMSKAYWR 75 (281)
Q Consensus 9 g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~-~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~ 75 (281)
+.-..+.|.|.+--..|.+++..+|.|+++|.. .+.-+.-.++++.+...+.++++++|+.+..|+.
T Consensus 114 ~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 114 AAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 333446678889999999999999999999988 5666777899999999999999999998877654
No 364
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=90.36 E-value=1 Score=26.44 Aligned_cols=20 Identities=15% Similarity=0.132 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhcCHHHHHHH
Q 023518 5 LEKKAKEAFIDDYFELAYDL 24 (281)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~ 24 (281)
++..|-.++.+|+|++|++.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 44445555555555555555
No 365
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=90.32 E-value=0.64 Score=27.75 Aligned_cols=30 Identities=27% Similarity=0.364 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~ 31 (281)
|+.+...|...+..++|++|+.-|.++|++
T Consensus 1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 1 ADVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred CcHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 456788999999999999999999999986
No 366
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=90.04 E-value=2 Score=39.75 Aligned_cols=96 Identities=10% Similarity=0.077 Sum_probs=63.2
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC---------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 023518 6 EKKAKEAFIDDYFELAYDLYSQAIEIS---------PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK 76 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~~---------p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~ 76 (281)
....+.+.-.|||..|++.++.. +.+ +-+...++..|-||+.+++|.+|++.|...+..-......+..+
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~ 204 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQR 204 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 45567788899999999987652 222 22356789999999999999999999998874221111111111
Q ss_pred HH-HHHHhhcHHHHHHHHHHhhhcCCC
Q 023518 77 AT-ACMKLEEYETAKVALEKGASLAPG 102 (281)
Q Consensus 77 g~-~~~~~g~~~~A~~~~~~a~~~~p~ 102 (281)
.. .-.-.+..++....+.-++.+.|.
T Consensus 205 ~~q~d~i~K~~eqMyaLlAic~~l~p~ 231 (404)
T PF10255_consen 205 SYQYDQINKKNEQMYALLAICLSLCPQ 231 (404)
T ss_pred cchhhHHHhHHHHHHHHHHHHHHhCCC
Confidence 11 111235566777777778888875
No 367
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=89.87 E-value=6.6 Score=33.87 Aligned_cols=62 Identities=18% Similarity=0.118 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 023518 21 AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (281)
Q Consensus 21 Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (281)
|..+|.+|+...|.+...|..+|..+...|+.-.|+-.|-|++-.......+.-++...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999996655456666666665555
No 368
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.40 E-value=0.5 Score=25.41 Aligned_cols=23 Identities=17% Similarity=-0.100 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHH
Q 023518 38 LFADRAQASIKLQNFTEAVADAN 60 (281)
Q Consensus 38 ~~~~~a~~~~~l~~~~~A~~~~~ 60 (281)
+++.+|.++..+|++++|+..++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45667777777777777766554
No 369
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.29 E-value=4.7 Score=32.93 Aligned_cols=66 Identities=18% Similarity=0.178 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCC
Q 023518 36 AELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRKATACMKLEEYETAKVALEKGASLAP 101 (281)
Q Consensus 36 ~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~---~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p 101 (281)
..++..+|.-|.+.|++++|++.|.++....-. ....++.+-.+.+..++|.....++.++..+-.
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~ 104 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE 104 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 467899999999999999999999998876543 356778888899999999999999999887643
No 370
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.29 E-value=11 Score=36.48 Aligned_cols=91 Identities=20% Similarity=0.130 Sum_probs=69.7
Q ss_pred hcCHHHHHHHHHHHHhc------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----cCC----------
Q 023518 15 DDYFELAYDLYSQAIEI------------SPNSAELFADRAQASIKLQNFTEAVADANRAIE-----LEP---------- 67 (281)
Q Consensus 15 ~~~y~~Al~~y~~al~~------------~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~-----l~p---------- 67 (281)
...|++|.+.|.-+... +|-+.+-++.+|.+...+|+.+-|.....++|- +.|
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 45678888888777665 344577889999999999998887777776662 112
Q ss_pred ------C---cHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCC-Chh
Q 023518 68 ------S---MSKAYWRKATACMKLEEYETAKVALEKGASLAPG-DSR 105 (281)
Q Consensus 68 ------~---~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~-~~~ 105 (281)
. ...+.|+.-..+.+.|.+..|.++++-.++++|. |+-
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl 378 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPL 378 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCch
Confidence 1 2557777778888999999999999999999998 664
No 371
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.22 E-value=6.5 Score=34.31 Aligned_cols=87 Identities=9% Similarity=0.069 Sum_probs=74.7
Q ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHH
Q 023518 16 DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFT-EAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALE 94 (281)
Q Consensus 16 ~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~-~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~ 94 (281)
.+..+-++++++.+..+|.|..+|--|-.+...+|++. .-++....++..+..+..+|-.+-.++...+.|+.=+.+..
T Consensus 92 ~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~ 171 (318)
T KOG0530|consen 92 SDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYAD 171 (318)
T ss_pred HHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHH
Confidence 45667788999999999999999999888888899888 88899999999999999999999999998888888888887
Q ss_pred HhhhcCCC
Q 023518 95 KGASLAPG 102 (281)
Q Consensus 95 ~a~~~~p~ 102 (281)
..++.+-.
T Consensus 172 ~Lle~Di~ 179 (318)
T KOG0530|consen 172 ELLEEDIR 179 (318)
T ss_pred HHHHHhhh
Confidence 77776543
No 372
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=89.20 E-value=0.38 Score=43.26 Aligned_cols=73 Identities=18% Similarity=0.028 Sum_probs=61.2
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 023518 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (281)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~ 80 (281)
.+...++.++|..|+..-..+++.++....+++.++..+..+.++++|++++..+....|.+....-.+...-
T Consensus 281 ~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~ 353 (372)
T KOG0546|consen 281 LAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVR 353 (372)
T ss_pred hHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhh
Confidence 4556677888899988888888888888899999999999999999999999999999999866544444333
No 373
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=88.97 E-value=4.9 Score=41.41 Aligned_cols=91 Identities=13% Similarity=0.077 Sum_probs=68.1
Q ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhh-----cHHHHH
Q 023518 16 DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE-----EYETAK 90 (281)
Q Consensus 16 ~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g-----~~~~A~ 90 (281)
..|.+|+..|++.-. .|.-+-=|+..|.+|.++|+|.+-+.++..|++..|+.+..-..+-.+.+++. +-..|.
T Consensus 533 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (932)
T PRK13184 533 RDFTQALSEFSYLHG-GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREAL 611 (932)
T ss_pred HHHHHHHHHHHHhcC-CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888888877443 45667778999999999999999999999999999987665555554444443 234566
Q ss_pred HHHHHhhhcCCCChhHH
Q 023518 91 VALEKGASLAPGDSRFT 107 (281)
Q Consensus 91 ~~~~~a~~~~p~~~~~~ 107 (281)
..+--++...|......
T Consensus 612 ~~~~~~~~~~~~~~~~~ 628 (932)
T PRK13184 612 VFMLLALWIAPEKISSR 628 (932)
T ss_pred HHHHHHHHhCcccccch
Confidence 77777888888765443
No 374
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=88.76 E-value=8.6 Score=35.44 Aligned_cols=62 Identities=15% Similarity=0.154 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHH--ccCHHHHHHHHHHHHH
Q 023518 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA--ELFADRAQASIK--LQNFTEAVADANRAIE 64 (281)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~--~~~~~~a~~~~~--l~~~~~A~~~~~~al~ 64 (281)
+..+.++..+|+.++|..|.+.|..++..-|.+. ..+..++.+|.. .-+|.+|...++..+.
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3456789999999999999999999998633333 345555555543 5678999988887665
No 375
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.33 E-value=4.8 Score=37.14 Aligned_cols=95 Identities=16% Similarity=0.114 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--------CCcHHH
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPN---SAELFADRAQASIKLQNFTEAVADANRAIELE--------PSMSKA 72 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~---~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~--------p~~~~a 72 (281)
.+.+.|.-|+.-|+++.|++.|.++-+.--+ -...+++.-.+-+-+++|........+|...- .-.++.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 4556788888899999999999997665322 24667788888888899999888888887652 112456
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHhhh
Q 023518 73 YWRKATACMKLEEYETAKVALEKGAS 98 (281)
Q Consensus 73 ~~~~g~~~~~~g~~~~A~~~~~~a~~ 98 (281)
....|.+.+.+++|..|..+|-.+..
T Consensus 232 ~C~agLa~L~lkkyk~aa~~fL~~~~ 257 (466)
T KOG0686|consen 232 KCAAGLANLLLKKYKSAAKYFLLAEF 257 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 67789999999999999999877654
No 376
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.18 E-value=16 Score=33.74 Aligned_cols=104 Identities=15% Similarity=0.132 Sum_probs=60.7
Q ss_pred hcCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc------------cCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 023518 15 DDYF-ELAYDLYSQAIEISPNSAELFADRAQASIKL------------QNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (281)
Q Consensus 15 ~~~y-~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l------------~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (281)
.|.| .+++++=.+.+..+|+...+|..|=.++... .-+++-+.....+++.+|+..-+|+-+..++.
T Consensus 41 ~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~ 120 (421)
T KOG0529|consen 41 AKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQ 120 (421)
T ss_pred ccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 3444 4455555556666666655444433333221 13444555666677777777777777777777
Q ss_pred Hhhc--HHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHH
Q 023518 82 KLEE--YETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (281)
Q Consensus 82 ~~g~--~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~ 118 (281)
+.+. +..=++.++++++.+|.+-..+...+.+....+
T Consensus 121 ~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~ 159 (421)
T KOG0529|consen 121 KNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAE 159 (421)
T ss_pred hCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHh
Confidence 6553 466666777777777777666665555544433
No 377
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=88.16 E-value=4.1 Score=28.41 Aligned_cols=30 Identities=27% Similarity=0.350 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~ 31 (281)
|..+..+|..+-..|+|++|+.+|.++|+.
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 456788888888899999888888888765
No 378
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.09 E-value=14 Score=35.05 Aligned_cols=92 Identities=12% Similarity=0.044 Sum_probs=68.6
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCC-C--HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc----------HHH
Q 023518 6 EKKAKEAFIDDYFELAYDLYSQAIEISPN-S--AELFADRAQASIKLQNFTEAVADANRAIELEPSM----------SKA 72 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~~p~-~--~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~----------~~a 72 (281)
.-.|.-+..-+-|+.|...|..|++.-.. + +.+..++|..|++.++-+.- ++..=.++|.+ +.+
T Consensus 371 ~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~---y~~ld~i~p~nt~s~ssq~l~a~~ 447 (629)
T KOG2300|consen 371 MLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDL---YKALDLIGPLNTNSLSSQRLEASI 447 (629)
T ss_pred HHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHH---HHHHHhcCCCCCCcchHHHHHHHH
Confidence 34566677778899999999999987433 3 34566789999997764442 22222344442 568
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHhhhcC
Q 023518 73 YWRKATACMKLEEYETAKVALEKGASLA 100 (281)
Q Consensus 73 ~~~~g~~~~~~g~~~~A~~~~~~a~~~~ 100 (281)
+|..|...+..+++.+|...+.+.++..
T Consensus 448 ~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 448 LYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 8889999999999999999999999887
No 379
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=87.88 E-value=2.7 Score=33.02 Aligned_cols=47 Identities=19% Similarity=0.244 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ 50 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~ 50 (281)
.++.++..++..|+|.-|+++.+.++..+|+|..+...++.+|..++
T Consensus 72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 72 KVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555554443
No 380
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=87.84 E-value=14 Score=35.62 Aligned_cols=100 Identities=15% Similarity=0.049 Sum_probs=79.5
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhhc
Q 023518 7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE-PSMSKAYWRKATACMKLEE 85 (281)
Q Consensus 7 ~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~-p~~~~a~~~~g~~~~~~g~ 85 (281)
....--...|++......|.+++---..-..+|.+.+......|+..-|-..+.++.++. +..+..++..+......|+
T Consensus 302 ~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n 381 (577)
T KOG1258|consen 302 YYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGN 381 (577)
T ss_pred HHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhcc
Confidence 334444578899999999999888777777889999998888888888888888777765 5566777778888888899
Q ss_pred HHHHHHHHHHhhhcCCCChhH
Q 023518 86 YETAKVALEKGASLAPGDSRF 106 (281)
Q Consensus 86 ~~~A~~~~~~a~~~~p~~~~~ 106 (281)
+..|...+++..+-.|+.-.+
T Consensus 382 ~~~A~~~lq~i~~e~pg~v~~ 402 (577)
T KOG1258|consen 382 FDDAKVILQRIESEYPGLVEV 402 (577)
T ss_pred HHHHHHHHHHHHhhCCchhhh
Confidence 999999999988877776543
No 381
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.72 E-value=3.4 Score=36.50 Aligned_cols=62 Identities=23% Similarity=0.199 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHh
Q 023518 35 SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKG 96 (281)
Q Consensus 35 ~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a 96 (281)
..+.-+..+.-....+++.+|...+..++...|.+..+.+.++.||...|+.+.|...+...
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 34455667778888999999999999999999999999999999999999999998887654
No 382
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.66 E-value=14 Score=30.29 Aligned_cols=93 Identities=11% Similarity=-0.019 Sum_probs=56.2
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHH-HcCCCcHHHHHHHHHHH
Q 023518 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKLQNFTEAVADANRAI-ELEPSMSKAYWRKATAC 80 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~~p~~----~~~~~~~a~~~~~l~~~~~A~~~~~~al-~l~p~~~~a~~~~g~~~ 80 (281)
+..|-.....|+-..|+..|+++-.-.+-- -.+.+.-|..++..|.|+....-.+-.- .-+|....+.-.+|.+-
T Consensus 98 mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa 177 (221)
T COG4649 98 MRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAA 177 (221)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHH
Confidence 444555566667777777776665543221 1233444445555566666544332211 12233455666789999
Q ss_pred HHhhcHHHHHHHHHHhhh
Q 023518 81 MKLEEYETAKVALEKGAS 98 (281)
Q Consensus 81 ~~~g~~~~A~~~~~~a~~ 98 (281)
++.|+|.+|..+|.+...
T Consensus 178 ~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 178 YKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HhccchHHHHHHHHHHHc
Confidence 999999999999998877
No 383
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=87.38 E-value=5.8 Score=29.75 Aligned_cols=65 Identities=14% Similarity=0.090 Sum_probs=51.9
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHcCCCcH---HHHHHHHHHHHHhhc-----------HHHHHHHHHHhhhcCCCChhH
Q 023518 42 RAQASIKLQNFTEAVADANRAIELEPSMS---KAYWRKATACMKLEE-----------YETAKVALEKGASLAPGDSRF 106 (281)
Q Consensus 42 ~a~~~~~l~~~~~A~~~~~~al~l~p~~~---~a~~~~g~~~~~~g~-----------~~~A~~~~~~a~~~~p~~~~~ 106 (281)
+|..++..|++-+|++..+..+...+.+. ..+..-|.+++.+.. .-.|+.+|.++..+.|.....
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~ 80 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHS 80 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHH
Confidence 57788999999999999999998887765 455666777776643 457889999999999977543
No 384
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=87.36 E-value=0.94 Score=31.60 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~ 31 (281)
|..+..+|..+-+.|+|++|+.+|..+++.
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 456777888888888888888888888765
No 385
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=87.27 E-value=9.9 Score=36.71 Aligned_cols=99 Identities=16% Similarity=0.069 Sum_probs=78.1
Q ss_pred HhcCHHH-HHHHHHHHHhcCCCCHHHHHHH--HHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHH
Q 023518 14 IDDYFEL-AYDLYSQAIEISPNSAELFADR--AQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAK 90 (281)
Q Consensus 14 ~~~~y~~-Al~~y~~al~~~p~~~~~~~~~--a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~ 90 (281)
..++.+. ++..+...+..++.++.++... +..+..++....+.-.+..++..+|.+..++.++|.+....|....+.
T Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~ 121 (620)
T COG3914 42 NAEGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLAL 121 (620)
T ss_pred cccCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHH
Confidence 3344433 6777777777888888875554 777777899989999999999999999999999999999988777776
Q ss_pred HHHHH-hhhcCCCChhHHHHHHH
Q 023518 91 VALEK-GASLAPGDSRFTNLIKE 112 (281)
Q Consensus 91 ~~~~~-a~~~~p~~~~~~~~l~~ 112 (281)
..+.. +....|.+..+...+-.
T Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~ 144 (620)
T COG3914 122 ADISEIAEWLSPDNAEFLGHLIR 144 (620)
T ss_pred HHHHHHHHhcCcchHHHHhhHHH
Confidence 66655 88889988887666633
No 386
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=87.16 E-value=1.3 Score=46.25 Aligned_cols=98 Identities=26% Similarity=0.359 Sum_probs=80.3
Q ss_pred hhHHHHHHHHHHHhcCHHHHHH------HHHHHH-hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--------
Q 023518 2 ATDLEKKAKEAFIDDYFELAYD------LYSQAI-EISPNSAELFADRAQASIKLQNFTEAVADANRAIELE-------- 66 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~------~y~~al-~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~-------- 66 (281)
+..++..|......+.+.+|.+ +++... .+.|.....|..++..+.+++++++|+....+|.-+.
T Consensus 932 a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds 1011 (1236)
T KOG1839|consen 932 AKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS 1011 (1236)
T ss_pred hhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC
Confidence 4567888999999999998888 555332 2367778899999999999999999999988887553
Q ss_pred CCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhc
Q 023518 67 PSMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (281)
Q Consensus 67 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~ 99 (281)
|+....+-.++...+..++...|...+.+++.+
T Consensus 1012 ~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1012 PNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred HHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence 355778888999999999999999988888764
No 387
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.01 E-value=4.1 Score=34.60 Aligned_cols=62 Identities=21% Similarity=0.136 Sum_probs=43.6
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc
Q 023518 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM 69 (281)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 69 (281)
-...+.+.+..++|+.....-++..|.+......+=..|.-.|+|++|+..++-+-++.|.+
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 34566677777777777777777777776666666666667777777777777777777765
No 388
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=86.92 E-value=11 Score=34.94 Aligned_cols=104 Identities=10% Similarity=0.023 Sum_probs=79.9
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhh-c---H
Q 023518 13 FIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ--NFTEAVADANRAIELEPSMSKAYWRKATACMKLE-E---Y 86 (281)
Q Consensus 13 ~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~--~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g-~---~ 86 (281)
.+..-.++-+.+...+++.+|++..+|.-|..++.+.+ ++..-++.++++++.+|.+..+|-.+-.+..... . .
T Consensus 86 ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~ 165 (421)
T KOG0529|consen 86 EKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLE 165 (421)
T ss_pred HHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccc
Confidence 34445678888999999999999999999999999876 4788999999999999998887765544444332 2 4
Q ss_pred HHHHHHHHHhhhcCCCChhHHHHHHHHHHH
Q 023518 87 ETAKVALEKGASLAPGDSRFTNLIKECEER 116 (281)
Q Consensus 87 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 116 (281)
.+=+.+..+++.-++.|-.+|-....+-..
T Consensus 166 ~~El~ftt~~I~~nfSNYsaWhyRs~lL~~ 195 (421)
T KOG0529|consen 166 KEELEFTTKLINDNFSNYSAWHYRSLLLST 195 (421)
T ss_pred hhHHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence 556677788888888877777666665443
No 389
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=86.81 E-value=15 Score=34.56 Aligned_cols=95 Identities=17% Similarity=0.052 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 023518 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSA-----ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA 79 (281)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~-----~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~ 79 (281)
+..+|-.+-+.+++.+|.+.|.+..+...+++ +++.+|-.-.+-+++.+.-.......-+..|...-..+-.|..
T Consensus 9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~ 88 (549)
T PF07079_consen 9 LCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALV 88 (549)
T ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 34578899999999999999999988766653 4455555555556777776666666666777777777889999
Q ss_pred HHHhhcHHHHHHHHHHhhhc
Q 023518 80 CMKLEEYETAKVALEKGASL 99 (281)
Q Consensus 80 ~~~~g~~~~A~~~~~~a~~~ 99 (281)
.++.|.|.+|+..+..-...
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~ 108 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQ 108 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhh
Confidence 99999999999988776655
No 390
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=86.78 E-value=17 Score=33.73 Aligned_cols=68 Identities=9% Similarity=0.031 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHc--C--CCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChh
Q 023518 38 LFADRAQASIKLQNFTEAVADANRAIEL--E--PSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR 105 (281)
Q Consensus 38 ~~~~~a~~~~~l~~~~~A~~~~~~al~l--~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 105 (281)
+..-+=.+|+..+.|+.|-....++.-- + ...+...|.+|.+..-+++|..|..+|-.|++..|.+..
T Consensus 211 LiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~a 282 (493)
T KOG2581|consen 211 LINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAA 282 (493)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhh
Confidence 3444556677777888887666555411 1 134667788999999999999999999999999998553
No 391
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=86.61 E-value=1.5 Score=29.69 Aligned_cols=30 Identities=47% Similarity=0.490 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~ 31 (281)
|..+..+|..+-+.|+|++|+.+|.++++.
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 345677788888888888888888887764
No 392
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.53 E-value=8 Score=32.27 Aligned_cols=72 Identities=22% Similarity=0.140 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHhhcHHHHHH
Q 023518 19 ELAYDLYSQAIEI-SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS----MSKAYWRKATACMKLEEYETAKV 91 (281)
Q Consensus 19 ~~Al~~y~~al~~-~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~----~~~a~~~~g~~~~~~g~~~~A~~ 91 (281)
+.|.+.|-++-.. .=+++++.+.+|..|. ..+-.+|+..+.+++++... +++.+..++.+++++|+++.|.-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence 4555555443322 1234677777777666 34667788888888876543 47777778888888888877753
No 393
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=86.40 E-value=21 Score=31.03 Aligned_cols=83 Identities=17% Similarity=0.073 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhh--------
Q 023518 17 YFELAYDLYSQAIEISPNSAELFADRAQASIK----LQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE-------- 84 (281)
Q Consensus 17 ~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~----l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g-------- 84 (281)
+...|+..|.++-... +..+.+.+|.+|.. -.++.+|..+|.+|...+. ..+++.++ +++..|
T Consensus 170 ~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~ 244 (292)
T COG0790 170 DDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAF 244 (292)
T ss_pred HHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhh
Confidence 3458999999998876 67888999988876 3589999999999999887 78889999 666665
Q ss_pred -------cHHHHHHHHHHhhhcCCCCh
Q 023518 85 -------EYETAKVALEKGASLAPGDS 104 (281)
Q Consensus 85 -------~~~~A~~~~~~a~~~~p~~~ 104 (281)
+...|..++..+....+...
T Consensus 245 ~~~~~~~~~~~a~~~~~~~~~~~~~~~ 271 (292)
T COG0790 245 LTAAKEEDKKQALEWLQKACELGFDNA 271 (292)
T ss_pred cccccCCCHHHHHHHHHHHHHcCChhH
Confidence 77788888888777665433
No 394
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=86.38 E-value=3.3 Score=35.72 Aligned_cols=61 Identities=15% Similarity=0.173 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHhhcHHHHHHHHHHh
Q 023518 36 AELFADRAQASIKLQNFTEAVADANRAIELEPS------MSKAYWRKATACMKLEEYETAKVALEKG 96 (281)
Q Consensus 36 ~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~------~~~a~~~~g~~~~~~g~~~~A~~~~~~a 96 (281)
..+...+|.-|+.+|+|++|+..++.+...... .......+..|+..+|+.+..+...-+.
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 677889999999999999999999998654321 2556777888999999988877765444
No 395
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.22 E-value=3.2 Score=36.64 Aligned_cols=59 Identities=20% Similarity=0.163 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHh
Q 023518 38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKG 96 (281)
Q Consensus 38 ~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a 96 (281)
++...+..|...|.+.+|++..++++.++|-+-..+..+-.++..+|+--.|...|++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 45557788888999999999999999999999889999999999999977777777664
No 396
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=86.13 E-value=8 Score=27.15 Aligned_cols=58 Identities=10% Similarity=0.052 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHH---HHHHHHhhcHHHHHHHHHH
Q 023518 38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK---ATACMKLEEYETAKVALEK 95 (281)
Q Consensus 38 ~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~---g~~~~~~g~~~~A~~~~~~ 95 (281)
-.+..|.=++..++.++|+..+.++++..++....+..+ ..+|...|+|.+++.+-.+
T Consensus 8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 8 QQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777788999999999999999888776655554 4677788888887766543
No 397
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=86.11 E-value=4 Score=40.24 Aligned_cols=46 Identities=15% Similarity=0.091 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEA 55 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A 55 (281)
.+++.+.|..++.+..|++|.++|...-. .-+.+.||+++..|++-
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~L 841 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGEL 841 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhH
Confidence 35677788888888899999998877432 34556777777777663
No 398
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=85.70 E-value=2.6 Score=39.77 Aligned_cols=97 Identities=16% Similarity=0.122 Sum_probs=75.4
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHH
Q 023518 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE 87 (281)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~ 87 (281)
.+...-..|+|+.|+..+..+-..-........-+-....+++++++|...+...+...-.+.+...--+..--.+|-++
T Consensus 329 ~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d 408 (831)
T PRK15180 329 RSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFD 408 (831)
T ss_pred HHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHH
Confidence 45556678999999998877655533333445556677889999999999999888877777777777777888899999
Q ss_pred HHHHHHHHhhhcCCCCh
Q 023518 88 TAKVALEKGASLAPGDS 104 (281)
Q Consensus 88 ~A~~~~~~a~~~~p~~~ 104 (281)
+|.-++++.+.++|...
T Consensus 409 ~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 409 KSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHHHHHhccCChhc
Confidence 99999999999987543
No 399
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=85.15 E-value=33 Score=33.73 Aligned_cols=110 Identities=19% Similarity=0.119 Sum_probs=75.0
Q ss_pred hHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCCC--H----HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC----cHH
Q 023518 3 TDLEKKAKEAF-IDDYFELAYDLYSQAIEISPNS--A----ELFADRAQASIKLQNFTEAVADANRAIELEPS----MSK 71 (281)
Q Consensus 3 ~~l~~~g~~~~-~~~~y~~Al~~y~~al~~~p~~--~----~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~----~~~ 71 (281)
...+..|..++ .-.+++.|..++++++.+...+ . ...+.++.++.+.+... |+..++++++.... ...
T Consensus 60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~ 138 (608)
T PF10345_consen 60 RVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWY 138 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHH
Confidence 34567788887 7789999999999998876443 2 23445678887777766 99999999986654 233
Q ss_pred HHHHHH--HHHHHhhcHHHHHHHHHHhhhcC--CCChhHHHHHHHH
Q 023518 72 AYWRKA--TACMKLEEYETAKVALEKGASLA--PGDSRFTNLIKEC 113 (281)
Q Consensus 72 a~~~~g--~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~ 113 (281)
..|++- ..+...+++..|...++...... .++..+.....-.
T Consensus 139 ~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~ 184 (608)
T PF10345_consen 139 YAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLS 184 (608)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHH
Confidence 333433 22222379999999999988876 4555544443333
No 400
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.08 E-value=12 Score=31.96 Aligned_cols=74 Identities=16% Similarity=0.213 Sum_probs=62.0
Q ss_pred HHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChh---HHHHHHHHHHHH
Q 023518 44 QASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR---FTNLIKECEERI 117 (281)
Q Consensus 44 ~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~---~~~~l~~~~~~l 117 (281)
..+++-+...+|+.+...-++-+|.+......+...|.-.|+|++|...++-+-++.|++.. +.+.+-+|+..-
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ea~R 85 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCEAAR 85 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHH
Confidence 45677789999999999999999999999999999999999999999999999999998754 344444554433
No 401
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.97 E-value=12 Score=35.77 Aligned_cols=83 Identities=14% Similarity=0.031 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC---C----CcHHHHHHHHHHHHHhhc-HHHHHHHHHHhhhcCCCChhHHH
Q 023518 37 ELFADRAQASIKLQNFTEAVADANRAIELE---P----SMSKAYWRKATACMKLEE-YETAKVALEKGASLAPGDSRFTN 108 (281)
Q Consensus 37 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~---p----~~~~a~~~~g~~~~~~g~-~~~A~~~~~~a~~~~p~~~~~~~ 108 (281)
-.++.+|.++..+|+...|..++..+++.. - -.+-++|-+|..|..++. ..+|..++.+|.....+..--.+
T Consensus 450 lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~lenR 529 (546)
T KOG3783|consen 450 LKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYELENR 529 (546)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccchhhH
Confidence 346779999999999999999999988431 1 137799999999999999 99999999999998765543334
Q ss_pred HHHHHHHHHHh
Q 023518 109 LIKECEERIAE 119 (281)
Q Consensus 109 ~l~~~~~~l~~ 119 (281)
..-+++..+..
T Consensus 530 Lh~rIqAAl~~ 540 (546)
T KOG3783|consen 530 LHMRIQAALHT 540 (546)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 402
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=84.86 E-value=1.5 Score=30.41 Aligned_cols=29 Identities=28% Similarity=0.260 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 023518 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (281)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~al~~ 31 (281)
..+..+|...-..|+|++|+.+|..+++.
T Consensus 7 i~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 7 HFLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 35666777777788888888888888775
No 403
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.66 E-value=3.2 Score=25.62 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=17.3
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHhhh
Q 023518 74 WRKATACMKLEEYETAKVALEKGAS 98 (281)
Q Consensus 74 ~~~g~~~~~~g~~~~A~~~~~~a~~ 98 (281)
+.+|.+|..+|+++.|+..++..+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4566777777777777777777663
No 404
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=84.28 E-value=15 Score=34.74 Aligned_cols=89 Identities=15% Similarity=0.076 Sum_probs=53.4
Q ss_pred HHHHHHhcCHHHHHHHHH--HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHH-------HHHHHHcC-----------CC
Q 023518 9 AKEAFIDDYFELAYDLYS--QAIEISPNSAELFADRAQASIKLQNFTEAVAD-------ANRAIELE-----------PS 68 (281)
Q Consensus 9 g~~~~~~~~y~~Al~~y~--~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~-------~~~al~l~-----------p~ 68 (281)
-..+..++||+++++... +.+..-| .......+..+.+.|..+.|+.. |+-|++++ -+
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~ 345 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELD 345 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCS
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcC
Confidence 445667788888777765 2222222 34455566666666666666542 33344332 24
Q ss_pred cHHHHHHHHHHHHHhhcHHHHHHHHHHhhhc
Q 023518 69 MSKAYWRKATACMKLEEYETAKVALEKGASL 99 (281)
Q Consensus 69 ~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~ 99 (281)
+...|-++|......|+++-|..||+++-.+
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~ 376 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKDF 376 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT-H
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc
Confidence 6789999999999999999999999997654
No 405
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=84.24 E-value=4.9 Score=29.86 Aligned_cols=46 Identities=17% Similarity=0.104 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 023518 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ 50 (281)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~ 50 (281)
...+|...+..|||..|.+...++-+..+.....|..-|++...+|
T Consensus 62 al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 62 ALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 3445555555556666666555555544444444444444444443
No 406
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=84.21 E-value=26 Score=35.54 Aligned_cols=95 Identities=20% Similarity=0.027 Sum_probs=77.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc-----HH
Q 023518 6 EKKAKEAFIDDYFELAYDLYSQAIEISPN---------SAELFADRAQASIKLQNFTEAVADANRAIELEPSM-----SK 71 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~~p~---------~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~-----~~ 71 (281)
+.+|-.+....+|.+|-.+..++...-+. .+.+...+|.+.+..+++++|+..++.++..-|.+ ..
T Consensus 419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~ 498 (894)
T COG2909 419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV 498 (894)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence 34567778889999999998888766443 14667779999999999999999999999876643 55
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhhcC
Q 023518 72 AYWRKATACMKLEEYETAKVALEKGASLA 100 (281)
Q Consensus 72 a~~~~g~~~~~~g~~~~A~~~~~~a~~~~ 100 (281)
++...|.+..-+|+|++|..+.+.+.+..
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a 527 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQMA 527 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence 77778899999999999999999888763
No 407
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=84.10 E-value=2.8 Score=22.81 Aligned_cols=29 Identities=34% Similarity=0.466 Sum_probs=19.1
Q ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 023518 16 DYFELAYDLYSQAIEISPNSAELFADRAQ 44 (281)
Q Consensus 16 ~~y~~Al~~y~~al~~~p~~~~~~~~~a~ 44 (281)
|+++.|...|.+++...|.+..+|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 35566777777777777766666665544
No 408
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=84.09 E-value=9.1 Score=32.93 Aligned_cols=51 Identities=24% Similarity=0.293 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCC------hhHHHHHHHHHHHHHhh
Q 023518 70 SKAYWRKATACMKLEEYETAKVALEKGASLAPGD------SRFTNLIKECEERIAEE 120 (281)
Q Consensus 70 ~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~l~~~ 120 (281)
....+.+|.-|+..|+|++|...|+.+....-.+ ..+...+..|...+++.
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~ 234 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDV 234 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence 3456678999999999999999999986554322 23456666777666554
No 409
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.93 E-value=8.7 Score=39.66 Aligned_cols=107 Identities=18% Similarity=0.180 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC---------C------
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP---------S------ 68 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p---------~------ 68 (281)
.+.+-|+.+|..+.|+.|--+|.. ..-|..+|..+..+|+|+.|...+++|-...- +
T Consensus 1196 ~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrl 1267 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRL 1267 (1666)
T ss_pred hHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhH
Confidence 345679999999999999999875 45578899999999999999999988765431 0
Q ss_pred ----------cHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHH
Q 023518 69 ----------MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (281)
Q Consensus 69 ----------~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~ 118 (281)
.++-+-.+-.-|..+|-|++-+..++.++-+.-.+-.....++.++.+.+
T Consensus 1268 AQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk 1327 (1666)
T KOG0985|consen 1268 AQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK 1327 (1666)
T ss_pred HHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC
Confidence 12222234445566788888888888888877666655555555554433
No 410
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=83.82 E-value=3.7 Score=39.18 Aligned_cols=82 Identities=16% Similarity=0.093 Sum_probs=64.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhc---HHHHHHHHHHhhhcCCCChhHHHHHHHHHH
Q 023518 39 FADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE---YETAKVALEKGASLAPGDSRFTNLIKECEE 115 (281)
Q Consensus 39 ~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~---~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 115 (281)
+..-|.-.+.......|+.+|.+++...|+....+.+++.++++.+- --.|+..+..|++++|....++.|+.++..
T Consensus 377 ~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~ 456 (758)
T KOG1310|consen 377 FKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALN 456 (758)
T ss_pred HHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHH
Confidence 33333333444567889999999999999999999999999998764 446677777899999998888888888877
Q ss_pred HHHhh
Q 023518 116 RIAEE 120 (281)
Q Consensus 116 ~l~~~ 120 (281)
.|.+.
T Consensus 457 el~r~ 461 (758)
T KOG1310|consen 457 ELTRY 461 (758)
T ss_pred HHhhH
Confidence 77766
No 411
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=83.59 E-value=8.4 Score=34.77 Aligned_cols=95 Identities=17% Similarity=0.124 Sum_probs=69.1
Q ss_pred hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhcHHHHHHH
Q 023518 15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE--PSMSKAYWRKATACMKLEEYETAKVA 92 (281)
Q Consensus 15 ~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~--p~~~~a~~~~g~~~~~~g~~~~A~~~ 92 (281)
+-||..-..+|+-.....|. +..-+||+.+.-+..=.+.++...+...... ..+...+-.+|..+.++|+-++|...
T Consensus 309 dtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~a 387 (415)
T COG4941 309 DTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAA 387 (415)
T ss_pred CCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHH
Confidence 44666666666666665554 5567888888887777777777666655442 23455677799999999999999999
Q ss_pred HHHhhhcCCCChhHHHHH
Q 023518 93 LEKGASLAPGDSRFTNLI 110 (281)
Q Consensus 93 ~~~a~~~~p~~~~~~~~l 110 (281)
|++++.+.++..+-....
T Consensus 388 ydrAi~La~~~aer~~l~ 405 (415)
T COG4941 388 YDRAIALARNAAERAFLR 405 (415)
T ss_pred HHHHHHhcCChHHHHHHH
Confidence 999999998776543333
No 412
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=83.59 E-value=2.2 Score=29.52 Aligned_cols=30 Identities=40% Similarity=0.416 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~ 31 (281)
|..++.+|...-..|+|++|+.+|.++++.
T Consensus 6 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 6 AIELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456677777788888888888888877765
No 413
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=83.55 E-value=14 Score=28.99 Aligned_cols=62 Identities=19% Similarity=0.082 Sum_probs=27.1
Q ss_pred HHHHHHHHH-HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Q 023518 5 LEKKAKEAF-IDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE 66 (281)
Q Consensus 5 l~~~g~~~~-~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 66 (281)
+.+.|..+. .+|.-+.--+.+...++.+..++.+++.+|.+|-++|+-.+|-+.+.+|.+.+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 344444333 23333333333444443344455666666666666666666666555555443
No 414
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=83.37 E-value=3.6 Score=28.51 Aligned_cols=30 Identities=23% Similarity=0.149 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~ 31 (281)
|..++.+|...-..|+|++|+.+|..+++.
T Consensus 6 Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 6 AIALVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 346677888888888888888888888775
No 415
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.29 E-value=33 Score=32.67 Aligned_cols=115 Identities=14% Similarity=0.030 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHHhc--CHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHH-ccCHHHHHHHHHHHHHcCC---Cc----
Q 023518 3 TDLEKKAKEAFIDD--YFELAYDLYSQAIEISPNS---AELFADRAQASIK-LQNFTEAVADANRAIELEP---SM---- 69 (281)
Q Consensus 3 ~~l~~~g~~~~~~~--~y~~Al~~y~~al~~~p~~---~~~~~~~a~~~~~-l~~~~~A~~~~~~al~l~p---~~---- 69 (281)
..+...|..+-..+ +...++++++..+...|.+ +....++|..++. .++++.|...+++|..+-. ..
T Consensus 8 ~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvK 87 (629)
T KOG2300|consen 8 EALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVK 87 (629)
T ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhh
Confidence 45566666666666 6788888888888776654 3445556655544 5788999999998887653 22
Q ss_pred HHHHHHHHHHHHHhh-cHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 70 SKAYWRKATACMKLE-EYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 70 ~~a~~~~g~~~~~~g-~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
..++-.++.+|.+.. .+..|...+++++++..+.+ .|-.++.-++.+.
T Consensus 88 f~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p---~wsckllfQLaql 136 (629)
T KOG2300|consen 88 FQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVP---YWSCKLLFQLAQL 136 (629)
T ss_pred hHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCc---hhhHHHHHHHHHH
Confidence 234555777777777 78888888999998876666 4555555555444
No 416
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=83.28 E-value=8.1 Score=37.04 Aligned_cols=48 Identities=13% Similarity=0.208 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 023518 17 YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIE 64 (281)
Q Consensus 17 ~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 64 (281)
.+++..+.|.+.+...|..+.+|.......++.++|+.....|.++|.
T Consensus 34 ~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 34 PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV 81 (656)
T ss_pred CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666663
No 417
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=83.09 E-value=4 Score=28.13 Aligned_cols=29 Identities=38% Similarity=0.401 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 023518 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (281)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~al~~ 31 (281)
..++.+|..+-..|+|++|+.+|..+++.
T Consensus 9 ~~li~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 9 KELISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34556666666677777777777666554
No 418
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=83.06 E-value=6.7 Score=32.24 Aligned_cols=50 Identities=26% Similarity=0.276 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCC
Q 023518 52 FTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPG 102 (281)
Q Consensus 52 ~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~ 102 (281)
....++.+++.++..| ++..+.+++.++..+|+.++|...++++..+.|.
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 5556677778888888 5678899999999999999999999999999993
No 419
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=82.84 E-value=4.5 Score=42.35 Aligned_cols=99 Identities=23% Similarity=0.206 Sum_probs=81.6
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNSAELFADRAQASIKLQNFTEAVADANRAIEL-------- 65 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~--------~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l-------- 65 (281)
+..+...+..++..+++++|+..-.++.-. .|+....|.+++...+..++...|+..+.++..+
T Consensus 973 ~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~ 1052 (1236)
T KOG1839|consen 973 ASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGED 1052 (1236)
T ss_pred HHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCC
Confidence 456778899999999999999998877554 3455778999999999999999999998888865
Q ss_pred CCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcC
Q 023518 66 EPSMSKAYWRKATACMKLEEYETAKVALEKGASLA 100 (281)
Q Consensus 66 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~ 100 (281)
.|.-....-+++..+..+++++.|+.+++.|....
T Consensus 1053 hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1053 HPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred CCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 35555566778888899999999999999998853
No 420
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=82.75 E-value=2.8 Score=37.95 Aligned_cols=56 Identities=20% Similarity=0.222 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHccCHHHHHHH
Q 023518 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEIS--------PNSAELFADRAQASIKLQNFTEAVAD 58 (281)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~al~~~--------p~~~~~~~~~a~~~~~l~~~~~A~~~ 58 (281)
..+...|+.++.+++|+.|...|..|..+. -+++..++.+|.+++.++++..++-.
T Consensus 42 e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~ 105 (400)
T KOG4563|consen 42 EELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLG 105 (400)
T ss_pred HHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 457788999999999999999998888772 22356777778888777777665543
No 421
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=82.73 E-value=2.9 Score=38.72 Aligned_cols=59 Identities=14% Similarity=0.167 Sum_probs=46.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC---------CCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhh
Q 023518 39 FADRAQASIKLQNFTEAVADANRAIELE---------PSMSKAYWRKATACMKLEEYETAKVALEKGAS 98 (281)
Q Consensus 39 ~~~~a~~~~~l~~~~~A~~~~~~al~l~---------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~ 98 (281)
+..+.++|..+|+|..|+..++.. .++ +-....+|..|.+|+-+++|.+|++.|...+-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555778888899999999876542 222 22456788999999999999999999987654
No 422
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.66 E-value=6.2 Score=32.94 Aligned_cols=46 Identities=24% Similarity=0.288 Sum_probs=40.1
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHccCHHHHH
Q 023518 11 EAFIDDYFELAYDLYSQAIEISPN----SAELFADRAQASIKLQNFTEAV 56 (281)
Q Consensus 11 ~~~~~~~y~~Al~~y~~al~~~p~----~~~~~~~~a~~~~~l~~~~~A~ 56 (281)
.+|...|-++|+.+|.++|.+... |++++..+|.+|+++++++.|-
T Consensus 149 tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 149 TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 456688999999999999998544 4899999999999999999884
No 423
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=82.03 E-value=4.3 Score=27.90 Aligned_cols=29 Identities=31% Similarity=0.446 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 023518 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (281)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~al~~ 31 (281)
..+..+|..+-..|+|++|+.+|..+++.
T Consensus 7 ~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 7 KELIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45666777777888888888888877765
No 424
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=81.90 E-value=8.4 Score=26.70 Aligned_cols=30 Identities=23% Similarity=0.453 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~ 31 (281)
|..++.+|...-..|+|++|+.+|..+++.
T Consensus 6 A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 6 AAELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 345667777777788888888888877765
No 425
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=81.49 E-value=8.1 Score=26.82 Aligned_cols=25 Identities=8% Similarity=-0.130 Sum_probs=11.5
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHH
Q 023518 90 KVALEKGASLAPGDSRFTNLIKECE 114 (281)
Q Consensus 90 ~~~~~~a~~~~p~~~~~~~~l~~~~ 114 (281)
+..+.+++...|++..-.....++.
T Consensus 33 Ie~L~q~~~~~pD~~~k~~yr~ki~ 57 (75)
T cd02682 33 IEVLSQIVKNYPDSPTRLIYEQMIN 57 (75)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHH
Confidence 3333444445666655444333333
No 426
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=80.79 E-value=10 Score=35.38 Aligned_cols=102 Identities=23% Similarity=0.295 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-----C-----HHHHHHHHHHHHHc-------cCH-HHHHHHHHHHHHc
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPN-----S-----AELFADRAQASIKL-------QNF-TEAVADANRAIEL 65 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~-----~-----~~~~~~~a~~~~~l-------~~~-~~A~~~~~~al~l 65 (281)
..++.|..++..|+|.+|+..|+.+|..-|= . ..=++..+.-|+.- +.. ....++.+|.+++
T Consensus 206 ~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~lEL 285 (422)
T PF06957_consen 206 ERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNLEL 285 (422)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHH
Confidence 3466799999999999999999999887221 1 11122222222211 111 1112223333333
Q ss_pred ---------CCCcHHHHHHHH-HHHHHhhcHHHHHHHHHHhhhcCCCChh
Q 023518 66 ---------EPSMSKAYWRKA-TACMKLEEYETAKVALEKGASLAPGDSR 105 (281)
Q Consensus 66 ---------~p~~~~a~~~~g-~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 105 (281)
.|.....-++.| ...++.++|..|....++.+++.|....
T Consensus 286 AAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~ 335 (422)
T PF06957_consen 286 AAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEV 335 (422)
T ss_dssp HHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHH
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHH
Confidence 232222223333 3456789999999999999999997654
No 427
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=80.30 E-value=10 Score=38.31 Aligned_cols=76 Identities=20% Similarity=0.108 Sum_probs=45.1
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHH
Q 023518 12 AFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKV 91 (281)
Q Consensus 12 ~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~ 91 (281)
+...|..++|+.+|++.-+. -.+-..|...|.+.+|++.++.-=++. .-.-||+++..+...++.+.|+.
T Consensus 810 AieLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccHHHHHH
Confidence 34445555555555554332 112233444555666555443222221 24478999999999999999999
Q ss_pred HHHHhh
Q 023518 92 ALEKGA 97 (281)
Q Consensus 92 ~~~~a~ 97 (281)
+|+++-
T Consensus 880 yyEK~~ 885 (1416)
T KOG3617|consen 880 YYEKAG 885 (1416)
T ss_pred HHHhcC
Confidence 998863
No 428
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=79.55 E-value=17 Score=42.14 Aligned_cols=114 Identities=17% Similarity=0.118 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhc-CHHHHHHHHHHH-Hhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 023518 5 LEKKAKEAFIDD-YFELAYDLYSQA-IEI--SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (281)
Q Consensus 5 l~~~g~~~~~~~-~y~~Al~~y~~a-l~~--~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~ 80 (281)
+.+++.+++... ++..+++..+.. +.. +...++.+..+|..+.++|++++|-..|..|++++-..+++|+..|..+
T Consensus 2777 ~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~ 2856 (3550)
T KOG0889|consen 2777 LREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYL 2856 (3550)
T ss_pred HHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 445566666554 444555444332 111 1223678999999999999999999999999999999999999999877
Q ss_pred HHhh--------cHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHh
Q 023518 81 MKLE--------EYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (281)
Q Consensus 81 ~~~g--------~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~ 119 (281)
.++- --..|..||-+|....-+. ..+..++++...+.-
T Consensus 2857 ~~~f~~e~~ni~~a~~avsCyLqA~~~~~~s-kaRk~iakvLwLls~ 2902 (3550)
T KOG0889|consen 2857 DNRFNKEPVNISFACNAVSCYLQAARLYNSS-KARKLIAKVLWLLSF 2902 (3550)
T ss_pred HHHHhccCcccHHHHHHHHHHHHHhccccch-hhHHHHHHHHHHHHh
Confidence 7641 1346777777777766432 244455554444433
No 429
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=77.78 E-value=8.8 Score=34.01 Aligned_cols=58 Identities=19% Similarity=0.102 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 023518 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRA 62 (281)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~a 62 (281)
+...+..|...|.|.+|+++.++++.++|=+...+..+.+.+..+|+--.|...|++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3455777889999999999999999999999999999999999999866666666553
No 430
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=77.78 E-value=43 Score=29.52 Aligned_cols=113 Identities=14% Similarity=0.044 Sum_probs=76.4
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCC--CHHHHHHHHHH---HHHccCH----HHHHHHHHHHHHcCCCcHHHHHHHHH
Q 023518 8 KAKEAFIDDYFELAYDLYSQAIEISPN--SAELFADRAQA---SIKLQNF----TEAVADANRAIELEPSMSKAYWRKAT 78 (281)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~~al~~~p~--~~~~~~~~a~~---~~~l~~~----~~A~~~~~~al~l~p~~~~a~~~~g~ 78 (281)
....++..++|++--+.|.+.....-+ ..+..+.++.. ++.+... ....+.++.=+...|+...+++.+|.
T Consensus 6 ~ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~ 85 (277)
T PF13226_consen 6 DIRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGM 85 (277)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHH
Confidence 567889999999999999988765332 22211222211 2222221 13455666777889999999999998
Q ss_pred HHHHhh----------------------cHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 79 ACMKLE----------------------EYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 79 ~~~~~g----------------------~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
.+++.. ..+.|..++.+|+.++|....+...+..+...++.-
T Consensus 86 ~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP 149 (277)
T PF13226_consen 86 YWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEP 149 (277)
T ss_pred HHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCc
Confidence 888752 266788889999999999887777766665555543
No 431
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.65 E-value=7.2 Score=35.53 Aligned_cols=74 Identities=18% Similarity=0.143 Sum_probs=51.8
Q ss_pred ccCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcCCCceeeeccccccccccCcceEEEeCcEEEEEEeecCC
Q 023518 179 YQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP 253 (281)
Q Consensus 179 ~Qt~~~V~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~L~~~I~~~~s~~~v~~~kiei~L~K~~~ 253 (281)
+=++-.=+|+|.++|.+.-.+..++.++ |.|-..+.+-..=..+++|-.+..|+.-+++|.+.++-+++.|++.
T Consensus 64 ~isg~~etV~Vtl~G~ns~~~~~~~~~d-FkV~ADLt~a~~Gt~evkl~ve~l~~~ltvsV~P~~~~Vti~kk~t 137 (403)
T COG4856 64 FISGQPETVTVTLKGPNSIVLKSEKPED-FKVVADLTHAGVGTHEVKLQVEGLPDGLTVSVNPEKATVTIEKKVT 137 (403)
T ss_pred cccCCceEEEEEEeCCcceeeeeecCcC-eEEEEEhhhcCCCceEeeeEeecCCCCceEEEccceeEEEEeeeeE
Confidence 3344445666777886655555555555 6666665432233467888899999999999999999999998764
No 432
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.56 E-value=18 Score=34.60 Aligned_cols=93 Identities=13% Similarity=0.028 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHhhcHHHHHHHHHHh
Q 023518 19 ELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWRKATACMKLEEYETAKVALEKG 96 (281)
Q Consensus 19 ~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~--~~~a~~~~g~~~~~~g~~~~A~~~~~~a 96 (281)
....+.........|+++.+.+..|..+...|+.+.|+..+...+..... ..-.+|-+|.++..+.+|..|-..+...
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L 329 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL 329 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 44445555556678999999999999999999988888888888872211 2457788899999999999999888887
Q ss_pred hhcCCCChhHHHHHH
Q 023518 97 ASLAPGDSRFTNLIK 111 (281)
Q Consensus 97 ~~~~p~~~~~~~~l~ 111 (281)
.....=...+...+.
T Consensus 330 ~desdWS~a~Y~Yfa 344 (546)
T KOG3783|consen 330 RDESDWSHAFYTYFA 344 (546)
T ss_pred HhhhhhhHHHHHHHH
Confidence 776554444444444
No 433
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=77.34 E-value=5.8 Score=36.84 Aligned_cols=56 Identities=18% Similarity=0.110 Sum_probs=50.5
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 023518 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAI 63 (281)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al 63 (281)
...+|...++.+.|+..--+.|.++|..+.-++.+|.|+..+.+|.+|-..+..|.
T Consensus 234 lv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 234 LVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred HHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999988766654
No 434
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=77.07 E-value=5.5 Score=24.56 Aligned_cols=25 Identities=24% Similarity=0.125 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHh
Q 023518 6 EKKAKEAFIDDYFELAYDLYSQAIE 30 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~ 30 (281)
++.|.+|+.+|+++.|.+.+.+.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3456666666666666666666663
No 435
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=76.78 E-value=33 Score=33.75 Aligned_cols=89 Identities=8% Similarity=0.025 Sum_probs=63.9
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCC-------C-------------------HHHHHHHHHHHHHccCHHHHHHHH
Q 023518 6 EKKAKEAFIDDYFELAYDLYSQAIEISPN-------S-------------------AELFADRAQASIKLQNFTEAVADA 59 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~~p~-------~-------------------~~~~~~~a~~~~~l~~~~~A~~~~ 59 (281)
+--|...+..+..+.|.+++.++++.-.+ . ...++..+.+..-++++..|....
T Consensus 305 ~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l 384 (608)
T PF10345_consen 305 FLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQEL 384 (608)
T ss_pred HHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 33466666677766777777777665111 0 123555677777789999998888
Q ss_pred HHHHHcC---C------CcHHHHHHHHHHHHHhhcHHHHHHHHH
Q 023518 60 NRAIELE---P------SMSKAYWRKATACMKLEEYETAKVALE 94 (281)
Q Consensus 60 ~~al~l~---p------~~~~a~~~~g~~~~~~g~~~~A~~~~~ 94 (281)
..+.... | ..+..+|..|..+...|+.+.|...|.
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 385 EFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 8776543 2 247789999999999999999999998
No 436
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=76.45 E-value=37 Score=32.74 Aligned_cols=92 Identities=14% Similarity=0.084 Sum_probs=68.9
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCcHH-HHHHHHHHHHHhhcH
Q 023518 10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL--EPSMSK-AYWRKATACMKLEEY 86 (281)
Q Consensus 10 ~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l--~p~~~~-a~~~~g~~~~~~g~~ 86 (281)
..++-.+|+.-|.+.|.-.|+..++.+.+-......+..+++-..|...|++++.. .++-.. .|-++-.--..-|+.
T Consensus 409 mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 409 MEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred HHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence 35677899999999999999999999988888888899999999999999999976 554444 444333334455777
Q ss_pred HHHHHHHHHhhhcCC
Q 023518 87 ETAKVALEKGASLAP 101 (281)
Q Consensus 87 ~~A~~~~~~a~~~~p 101 (281)
..++..-++-....|
T Consensus 489 ~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 489 NSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHHHHHhcc
Confidence 777766655554444
No 437
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=75.45 E-value=52 Score=32.11 Aligned_cols=89 Identities=13% Similarity=0.087 Sum_probs=64.5
Q ss_pred HHHHHHHHHH---HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 023518 4 DLEKKAKEAF---IDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (281)
Q Consensus 4 ~l~~~g~~~~---~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~ 80 (281)
.+...|..+. +.+..+.+....+.-+--........+.+|..+-..+..+.|-.+|++.+..+++ .+++..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 84 (578)
T PRK15490 7 KLAALGKTCLTLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRL 84 (578)
T ss_pred HHHHhhhHHHHHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHH
Confidence 3444555554 3444555555555544444555667788888888889999999999999998888 5788888888
Q ss_pred HHhhcHHHHHHHHH
Q 023518 81 MKLEEYETAKVALE 94 (281)
Q Consensus 81 ~~~g~~~~A~~~~~ 94 (281)
++.|-...|...++
T Consensus 85 ~~~~~~~~~~~~~~ 98 (578)
T PRK15490 85 YNTGLAKDAQLILK 98 (578)
T ss_pred HhhhhhhHHHHHHH
Confidence 88888888887776
No 438
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=75.15 E-value=57 Score=30.14 Aligned_cols=56 Identities=14% Similarity=-0.008 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHH--ccCHHHHHHHHH
Q 023518 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPN-----SAELFADRAQASIK--LQNFTEAVADAN 60 (281)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~al~~~p~-----~~~~~~~~a~~~~~--l~~~~~A~~~~~ 60 (281)
...++..+|+.++|..|...|.+++...+. ....+..++.+|.. .=+|.+|...++
T Consensus 133 e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 133 EQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 345678999999999999999999987532 24455666666654 557888888887
No 439
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=75.12 E-value=43 Score=29.58 Aligned_cols=112 Identities=11% Similarity=0.095 Sum_probs=72.8
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCCC----------HH----HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHH
Q 023518 7 KKAKEAFIDDYFELAYDLYSQAIEISPNS----------AE----LFADRAQASIKLQNFTEAVADANRAIELEPSMSKA 72 (281)
Q Consensus 7 ~~g~~~~~~~~y~~Al~~y~~al~~~p~~----------~~----~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a 72 (281)
..+..++...||..|++..+++++.-..+ .+ +..-=-+++..++++.+++.+.-+-.+.-.+.+.-
T Consensus 40 ~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpk 119 (309)
T PF07163_consen 40 EAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPK 119 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHH
Confidence 45777889999999999999998763111 11 12223367778899999999888888766666555
Q ss_pred HHHHHHHHH-HhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHh
Q 023518 73 YWRKATACM-KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (281)
Q Consensus 73 ~~~~g~~~~-~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~ 119 (281)
...+++++| +.+++.... ..-.+.-.+|+|.....+..-++--+..
T Consensus 120 IleLCILLysKv~Ep~aml-ev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 120 ILELCILLYSKVQEPAAML-EVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHHHHHhcCHHHHH-HHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 566666655 556655444 4445555677777655544444443433
No 440
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=73.86 E-value=12 Score=34.96 Aligned_cols=114 Identities=15% Similarity=0.079 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc------------------------cCHHHHHHHH
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKL------------------------QNFTEAVADA 59 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l------------------------~~~~~A~~~~ 59 (281)
..++.|...+..++|.+++..+.+||+..- ...-..+.|.... |.+-+-..+.
T Consensus 33 ~ay~~gl~~y~~~~w~~~v~~le~ALr~~~---~~~~~~~~Cr~~C~g~~~~~e~~~~~~s~~~~~~a~fg~~le~a~Cl 109 (471)
T KOG4459|consen 33 LAYSHGLESYEEENWPEAVRFLERALRLFR---ALRDSEAFCRTNCEGPAQLPEPEAGSASFGGLYLAIFGHLLERAACL 109 (471)
T ss_pred HHHHHHHhhhhhccHHHHHHHHHHHHHHHH---HHhhhHHHHHhhccCcccCCCchhcccccchhHHHHHHHHHHHHHHH
Confidence 456889999999999999999999998621 0111111122211 2222223333
Q ss_pred HHHHHcC---CC----------cHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 60 NRAIELE---PS----------MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 60 ~~al~l~---p~----------~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
.++..-- +. .-..|..+-.+|++.|++.+|+++-.-.+-.+|++..++..+..-+..+...
T Consensus 110 ~rCkg~~~~~~~~~~~~~~df~~r~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq~~l~~s 183 (471)
T KOG4459|consen 110 RRCKGELAARHGSDRSPYLDFRPRLPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQTMLGVS 183 (471)
T ss_pred HHHhcccccCCCcccchhhhhccchHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHHhccCCC
Confidence 3333211 11 1357777899999999999999999888999999999988888877666654
No 441
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=73.81 E-value=71 Score=29.07 Aligned_cols=92 Identities=16% Similarity=0.069 Sum_probs=64.5
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC--------------------
Q 023518 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP-------------------- 67 (281)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p-------------------- 67 (281)
.-..+.+..+..+-++.-..|++++|.-+.+|..+|.-- .....+|...+++|++...
T Consensus 190 IMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~ 267 (556)
T KOG3807|consen 190 IMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQL 267 (556)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhh
Confidence 345567777888888888999999988888887766433 2235566666666664321
Q ss_pred ---CcHH--HHHHHHHHHHHhhcHHHHHHHHHHhhhcCC
Q 023518 68 ---SMSK--AYWRKATACMKLEEYETAKVALEKGASLAP 101 (281)
Q Consensus 68 ---~~~~--a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p 101 (281)
.+.. .-.+++.|-.++|+..+|.+.|+...+-.|
T Consensus 268 rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 268 RRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred hcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 1112 335678999999999999999988777666
No 442
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=73.63 E-value=8.3 Score=36.44 Aligned_cols=50 Identities=18% Similarity=0.099 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcH
Q 023518 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY 86 (281)
Q Consensus 37 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~ 86 (281)
+-...+|.-....|+|.=+.+..++++-.+|.+..+....+.++.++|--
T Consensus 453 drVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYq 502 (655)
T COG2015 453 DRVLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQ 502 (655)
T ss_pred HHHHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhh
Confidence 34455666666677777777777777777777777777777777777654
No 443
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=72.89 E-value=66 Score=30.53 Aligned_cols=102 Identities=14% Similarity=0.097 Sum_probs=68.2
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHH-HHhhcHH
Q 023518 10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP-SMSKAYWRKATAC-MKLEEYE 87 (281)
Q Consensus 10 ~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p-~~~~a~~~~g~~~-~~~g~~~ 87 (281)
..++..+++..|...|.-.+...|+++.+-...-..++.+++-..|...|+.++..-. ...+..|..-+-| ..-|+..
T Consensus 440 ~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN 519 (660)
T COG5107 440 IEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLN 519 (660)
T ss_pred HHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchH
Confidence 3466788888888888888888888877766677777788888888888887775432 2333333333333 3457777
Q ss_pred HHHHHHHHhhhcCCCChhHHHHHH
Q 023518 88 TAKVALEKGASLAPGDSRFTNLIK 111 (281)
Q Consensus 88 ~A~~~~~~a~~~~p~~~~~~~~l~ 111 (281)
.+...-++-.++.|..........
T Consensus 520 ~v~sLe~rf~e~~pQen~~evF~S 543 (660)
T COG5107 520 NVYSLEERFRELVPQENLIEVFTS 543 (660)
T ss_pred HHHhHHHHHHHHcCcHhHHHHHHH
Confidence 777777777777776544433333
No 444
>PF15469 Sec5: Exocyst complex component Sec5
Probab=72.71 E-value=32 Score=27.97 Aligned_cols=27 Identities=11% Similarity=-0.016 Sum_probs=15.9
Q ss_pred cHHHHHHHHHHhhhcCCCChhHHHHHH
Q 023518 85 EYETAKVALEKGASLAPGDSRFTNLIK 111 (281)
Q Consensus 85 ~~~~A~~~~~~a~~~~p~~~~~~~~l~ 111 (281)
..++...++...+++++.+..++.|+.
T Consensus 154 s~~~~~~~i~~Ll~L~~~~dPi~~~l~ 180 (182)
T PF15469_consen 154 SQEEFLKLIRKLLELNVEEDPIWYWLE 180 (182)
T ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 355555566666666666655666653
No 445
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=71.32 E-value=11 Score=20.25 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHH
Q 023518 52 FTEAVADANRAIELEPSMSKAYWR 75 (281)
Q Consensus 52 ~~~A~~~~~~al~l~p~~~~a~~~ 75 (281)
++.|...|++++...|.+...|..
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~ 26 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLK 26 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHH
Confidence 344444444444444444444443
No 446
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=70.54 E-value=33 Score=32.40 Aligned_cols=58 Identities=10% Similarity=0.062 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--------CCcHHHHHHHHHHHHHhhcHHHHH
Q 023518 33 PNSAELFADRAQASIKLQNFTEAVADANRAIELE--------PSMSKAYWRKATACMKLEEYETAK 90 (281)
Q Consensus 33 p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~--------p~~~~a~~~~g~~~~~~g~~~~A~ 90 (281)
-++...|..+|...+..|+++-|..+|.++-..+ -.+...+-.++......|++.-|.
T Consensus 344 ~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af 409 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDINIAF 409 (443)
T ss_dssp CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHH
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHH
Confidence 3467899999999999999999999888754332 234444444554444444444443
No 447
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=69.99 E-value=64 Score=32.94 Aligned_cols=90 Identities=16% Similarity=0.038 Sum_probs=67.9
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC----c--HHHHH
Q 023518 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNS-----AELFADRAQASIKLQNFTEAVADANRAIELEPS----M--SKAYW 74 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~~p~~-----~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~----~--~~a~~ 74 (281)
.-+|..+...++.+.|+.+.+.++.+-|.+ ..++...|.++.-.|+|.+|+.....+.++... . ..+.+
T Consensus 462 aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~ 541 (894)
T COG2909 462 ALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLL 541 (894)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 346788889999999999999999997765 467788899999999999999998888877432 2 33445
Q ss_pred HHHHHHHHhh--cHHHHHHHHHH
Q 023518 75 RKATACMKLE--EYETAKVALEK 95 (281)
Q Consensus 75 ~~g~~~~~~g--~~~~A~~~~~~ 95 (281)
..+.++..+| .+++....|..
T Consensus 542 ~~s~il~~qGq~~~a~~~~~~~~ 564 (894)
T COG2909 542 QQSEILEAQGQVARAEQEKAFNL 564 (894)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 5678888888 34444444443
No 448
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=69.89 E-value=48 Score=30.88 Aligned_cols=96 Identities=18% Similarity=0.043 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHccC--------------HHHHHHHHHHHH
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA------ELFADRAQASIKLQN--------------FTEAVADANRAI 63 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~------~~~~~~a~~~~~l~~--------------~~~A~~~~~~al 63 (281)
.+...|+.+|..+||+.|+..|..+.+..-++. .++-..|.|++..+. ++.|...|.++-
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~ 289 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA 289 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence 356679999999999999999999988654442 223334555555542 233333344321
Q ss_pred ----HcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhc
Q 023518 64 ----ELEPSMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (281)
Q Consensus 64 ----~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~ 99 (281)
.....-..+.+..+.++..++.|.+|...+-+....
T Consensus 290 ~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 290 LPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred ccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 111122345555666777788887777666555544
No 449
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=68.38 E-value=23 Score=28.99 Aligned_cols=49 Identities=22% Similarity=0.196 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC
Q 023518 18 FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP 67 (281)
Q Consensus 18 y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p 67 (281)
-+..++...+.++..|+ +..+.+++.++..+|+.++|.+...++..+.|
T Consensus 127 l~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 44555666777777775 77889999999999999999999999999999
No 450
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.14 E-value=93 Score=32.00 Aligned_cols=104 Identities=18% Similarity=0.130 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCC----------CHHHHHHHHHHHHHc------------cCHHHH--HHHHH
Q 023518 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPN----------SAELFADRAQASIKL------------QNFTEA--VADAN 60 (281)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~al~~~p~----------~~~~~~~~a~~~~~l------------~~~~~A--~~~~~ 60 (281)
-.++|-.+...|.|.+|++.|+.+|-.-|- .+.-+...+.-|+.- ...+.+ +..|-
T Consensus 994 kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYF 1073 (1202)
T KOG0292|consen 994 KLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYF 1073 (1202)
T ss_pred HHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHh
Confidence 456788889999999999999999876331 123344444333321 234444 22233
Q ss_pred HHHHcCCCcHH-HHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHH
Q 023518 61 RAIELEPSMSK-AYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTN 108 (281)
Q Consensus 61 ~al~l~p~~~~-a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 108 (281)
.-..+.|.... +...--..++++++|..|.....+.+++.|..+.+.+
T Consensus 1074 t~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q 1122 (1202)
T KOG0292|consen 1074 THCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQ 1122 (1202)
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHH
Confidence 33345554433 3333346788999999999999999999998775533
No 451
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=66.17 E-value=18 Score=32.71 Aligned_cols=92 Identities=14% Similarity=0.030 Sum_probs=70.4
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhc----C--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-----CC--cHHHHH
Q 023518 8 KAKEAFIDDYFELAYDLYSQAIEI----S--PNSAELFADRAQASIKLQNFTEAVADANRAIELE-----PS--MSKAYW 74 (281)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~~al~~----~--p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~-----p~--~~~a~~ 74 (281)
....|+..++|.+|+.+....++. + +.-.+.+..-+.+|+.+.+...|...+..|-... |. .+..-+
T Consensus 134 li~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDL 213 (411)
T KOG1463|consen 134 LIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDL 213 (411)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHH
Confidence 466788999999999998877664 2 2225678888999999999999988777666443 22 233445
Q ss_pred HHHHHHHHhhcHHHHHHHHHHhhhc
Q 023518 75 RKATACMKLEEYETAKVALEKGASL 99 (281)
Q Consensus 75 ~~g~~~~~~g~~~~A~~~~~~a~~~ 99 (281)
.-|+.+..-.+|..|..+|-.|++-
T Consensus 214 qSGIlha~ekDykTafSYFyEAfEg 238 (411)
T KOG1463|consen 214 QSGILHAAEKDYKTAFSYFYEAFEG 238 (411)
T ss_pred hccceeecccccchHHHHHHHHHcc
Confidence 5688888889999999999999874
No 452
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=66.09 E-value=1.5e+02 Score=30.15 Aligned_cols=18 Identities=11% Similarity=0.160 Sum_probs=12.3
Q ss_pred HhcCHHHHHHHHHHHHhc
Q 023518 14 IDDYFELAYDLYSQAIEI 31 (281)
Q Consensus 14 ~~~~y~~Al~~y~~al~~ 31 (281)
..+++++|-.+|.-....
T Consensus 377 ir~emDd~~~~f~lL~n~ 394 (1102)
T KOG1924|consen 377 IRAEMDDANEVFELLANT 394 (1102)
T ss_pred hhhhhccHHHHHHHHHHh
Confidence 456777777777766554
No 453
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=66.06 E-value=1.4e+02 Score=29.21 Aligned_cols=106 Identities=15% Similarity=0.084 Sum_probs=70.7
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHH---HHHHHHHcCCC---cHHHHHHHHH-HHH
Q 023518 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVA---DANRAIELEPS---MSKAYWRKAT-ACM 81 (281)
Q Consensus 9 g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~---~~~~al~l~p~---~~~a~~~~g~-~~~ 81 (281)
+...-..|++..|...|++.....|....+-+..+....+.|+.+.+.. .+...+.-..+ ....+...+. .+.
T Consensus 373 a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 373 ARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 3344456788899999988888888888888888888888888888774 22222211111 1333334443 333
Q ss_pred HhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHH
Q 023518 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECE 114 (281)
Q Consensus 82 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 114 (281)
-.++-+.|...+.++....|.+..+...+....
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~ 485 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFE 485 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHH
Confidence 457788888999999999998887765555543
No 454
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=66.04 E-value=36 Score=22.55 Aligned_cols=52 Identities=15% Similarity=0.081 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH----HHHHH--HHHHHHHccCHHHHHH
Q 023518 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSA----ELFAD--RAQASIKLQNFTEAVA 57 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~----~~~~~--~a~~~~~l~~~~~A~~ 57 (281)
+..|..+++.|+|=+|-+.+..+....+.+. ..+++ -|..+.+.|+...|..
T Consensus 3 ~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~ 60 (62)
T PF03745_consen 3 LEEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARR 60 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHH
T ss_pred HHHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 5678888899999999999988887655442 12233 3334444566666654
No 455
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=63.04 E-value=46 Score=24.72 Aligned_cols=41 Identities=17% Similarity=0.151 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHh
Q 023518 74 WRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (281)
Q Consensus 74 ~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~ 119 (281)
+-+...+..+|+|++|....+.. + .+++.-|++-|..+++-
T Consensus 43 lIRlsSLmNrG~Yq~Al~l~~~~----~-~pdlepw~ALce~rlGl 83 (115)
T TIGR02508 43 LIRLSSLMNRGDYQSALQLGNKL----C-YPDLEPWLALCEWRLGL 83 (115)
T ss_pred HHHHHHHHccchHHHHHHhcCCC----C-CchHHHHHHHHHHhhcc
Confidence 33445555555555555443322 1 33444555555444433
No 456
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=62.93 E-value=44 Score=25.74 Aligned_cols=60 Identities=15% Similarity=-0.048 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---------------AELFADRAQASIKLQNFTEAVADANRAI 63 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~---------------~~~~~~~a~~~~~l~~~~~A~~~~~~al 63 (281)
.+...|+.+++.+++-.++-.|++|+....+- ..-.-++|..+..+|+.+-.+.+++-|-
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlAS 77 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLAS 77 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHH
Confidence 45567999999999999999999998763221 2234567777777787777777665443
No 457
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=62.15 E-value=1.3e+02 Score=34.32 Aligned_cols=101 Identities=12% Similarity=0.027 Sum_probs=73.0
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc------------
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM------------ 69 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~------------ 69 (281)
++-|.+.|+.+-..|.++.|....-.|.+.. -+.++..+|..+...|+-..|+..++..+..+-.+
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~ 1747 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSV 1747 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhh
Confidence 4567888888889999999999999988876 56789999999999999999999999999765221
Q ss_pred -----HHHHHHHHHHHHHhhcH--HHHHHHHHHhhhcCCCCh
Q 023518 70 -----SKAYWRKATACMKLEEY--ETAKVALEKGASLAPGDS 104 (281)
Q Consensus 70 -----~~a~~~~g~~~~~~g~~--~~A~~~~~~a~~~~p~~~ 104 (281)
.++.+..+.-....+++ .+-+..|+.+....|...
T Consensus 1748 n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe 1789 (2382)
T KOG0890|consen 1748 NLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWE 1789 (2382)
T ss_pred hhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccccc
Confidence 22334444333344442 234556777777777433
No 458
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=62.06 E-value=45 Score=23.13 Aligned_cols=22 Identities=23% Similarity=0.143 Sum_probs=8.7
Q ss_pred HHHHHHHHccCHHHHHHHHHHH
Q 023518 41 DRAQASIKLQNFTEAVADANRA 62 (281)
Q Consensus 41 ~~a~~~~~l~~~~~A~~~~~~a 62 (281)
.+|.-+-..|+|++|+.+|..+
T Consensus 11 ~~Ave~D~~g~y~eAl~~Y~~a 32 (77)
T cd02683 11 KRAVELDQEGRFQEALVCYQEG 32 (77)
T ss_pred HHHHHHHHhccHHHHHHHHHHH
Confidence 3333333334444444444333
No 459
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=61.83 E-value=22 Score=20.22 Aligned_cols=29 Identities=24% Similarity=0.178 Sum_probs=16.3
Q ss_pred HHHHHHH--HHHHHhh-----cHHHHHHHHHHhhhc
Q 023518 71 KAYWRKA--TACMKLE-----EYETAKVALEKGASL 99 (281)
Q Consensus 71 ~a~~~~g--~~~~~~g-----~~~~A~~~~~~a~~~ 99 (281)
.+.+.+| .+|..-. ++.+|..+|+++.+.
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 4566666 3333322 466777777776554
No 460
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=60.43 E-value=15 Score=25.75 Aligned_cols=16 Identities=25% Similarity=0.588 Sum_probs=8.4
Q ss_pred CHHHHHHHHHHHHhcC
Q 023518 17 YFELAYDLYSQAIEIS 32 (281)
Q Consensus 17 ~y~~Al~~y~~al~~~ 32 (281)
-|+.|.+..+++|..+
T Consensus 4 ~~~~A~~~I~kaL~~d 19 (79)
T cd02679 4 YYKQAFEEISKALRAD 19 (79)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 3455555555555543
No 461
>PF12854 PPR_1: PPR repeat
Probab=60.23 E-value=23 Score=20.07 Aligned_cols=26 Identities=12% Similarity=0.014 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHH
Q 023518 36 AELFADRAQASIKLQNFTEAVADANR 61 (281)
Q Consensus 36 ~~~~~~~a~~~~~l~~~~~A~~~~~~ 61 (281)
...|.-+-.+|.+.|+.++|++.+++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 34566677777777777777776654
No 462
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=59.27 E-value=21 Score=32.56 Aligned_cols=58 Identities=14% Similarity=0.147 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCC--------CcHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 023518 38 LFADRAQASIKLQNFTEAVADANRAIELEP--------SMSKAYWRKATACMKLEEYETAKVALEK 95 (281)
Q Consensus 38 ~~~~~a~~~~~l~~~~~A~~~~~~al~l~p--------~~~~a~~~~g~~~~~~g~~~~A~~~~~~ 95 (281)
=++..|+-++.+++|+.|...|..|..+.. .+..++|.+|.+++.+++++.+..++..
T Consensus 43 ~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~nal 108 (400)
T KOG4563|consen 43 ELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGNAL 108 (400)
T ss_pred HHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 467788999999999999999999987653 3578999999999999999988876654
No 463
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=58.85 E-value=19 Score=27.52 Aligned_cols=29 Identities=14% Similarity=0.347 Sum_probs=15.5
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 023518 7 KKAKEAFIDDYFELAYDLYSQAIEISPNS 35 (281)
Q Consensus 7 ~~g~~~~~~~~y~~Al~~y~~al~~~p~~ 35 (281)
..|..+...|++++|+.+|-.|+...|+-
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~qP 96 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQP 96 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCH
Confidence 44555555555555555555555555543
No 464
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=58.58 E-value=76 Score=23.81 Aligned_cols=76 Identities=13% Similarity=0.035 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 023518 38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (281)
Q Consensus 38 ~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l 117 (281)
.+..+|..-...+..++|...++-.-..+...--+..-+...+..+|+|++| -..-.....+++.-|..-|..++
T Consensus 8 lLAElAL~atG~HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~A-----Ll~~~~~~~pdL~p~~AL~a~kl 82 (116)
T PF09477_consen 8 LLAELALMATGHHCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEA-----LLLPQCHCYPDLEPWAALCAWKL 82 (116)
T ss_dssp HHHHHHHHHHTTT-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHH-----HHHHTTS--GGGHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHH-----HHhcccCCCccHHHHHHHHHHhh
Q ss_pred H
Q 023518 118 A 118 (281)
Q Consensus 118 ~ 118 (281)
+
T Consensus 83 G 83 (116)
T PF09477_consen 83 G 83 (116)
T ss_dssp T
T ss_pred c
No 465
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=57.77 E-value=65 Score=29.29 Aligned_cols=71 Identities=17% Similarity=0.118 Sum_probs=50.3
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 023518 8 KAKEAFIDDYFELAYDLYSQAIEI--SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (281)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~~al~~--~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~ 78 (281)
++.+.-+..-...++......... -....-++..||..+.++|+..+|...|++++.+.++..+..+.+..
T Consensus 335 RAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r 407 (415)
T COG4941 335 RAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQR 407 (415)
T ss_pred HHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 444444444455666666555544 22234577889999999999999999999999999988776665543
No 466
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=57.41 E-value=55 Score=21.81 Aligned_cols=20 Identities=25% Similarity=0.189 Sum_probs=7.7
Q ss_pred HHHHHHccCHHHHHHHHHHH
Q 023518 43 AQASIKLQNFTEAVADANRA 62 (281)
Q Consensus 43 a~~~~~l~~~~~A~~~~~~a 62 (281)
|.-+-..|+|++|+..|..+
T Consensus 12 Av~~D~~g~~~~A~~~Y~~a 31 (69)
T PF04212_consen 12 AVEADEAGNYEEALELYKEA 31 (69)
T ss_dssp HHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 33333334444444433333
No 467
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=56.86 E-value=99 Score=24.59 Aligned_cols=97 Identities=21% Similarity=0.150 Sum_probs=68.3
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhc-------CCCC--------------------------------HHHHHHH
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI-------SPNS--------------------------------AELFADR 42 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~-------~p~~--------------------------------~~~~~~~ 42 (281)
|-.....+......|+.++|+..+.++... +|.. .......
T Consensus 2 A~~~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~ 81 (155)
T PF10938_consen 2 AMRDIQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKT 81 (155)
T ss_dssp HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHH
Confidence 345567889999999999999999988765 1111 2456778
Q ss_pred HHHHHHccCHHHHHHHHHHHHH-cC------C-CcHHHHHHHHHHHHHhhcHHHHHHHHHHhhh
Q 023518 43 AQASIKLQNFTEAVADANRAIE-LE------P-SMSKAYWRKATACMKLEEYETAKVALEKGAS 98 (281)
Q Consensus 43 a~~~~~l~~~~~A~~~~~~al~-l~------p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~ 98 (281)
+.-+++.|+...|.+.++.+-. ++ | .........+..+...|+|.+|...+..++.
T Consensus 82 a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 82 ANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 8888889999999876655332 11 1 1244556789999999999999999988764
No 468
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=56.79 E-value=49 Score=29.73 Aligned_cols=28 Identities=39% Similarity=0.436 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~ 31 (281)
.+..+|...-+.++|++|+.+|..++++
T Consensus 12 ~lv~kA~~eD~a~nY~eA~~lY~~aleY 39 (439)
T KOG0739|consen 12 DLVKKAIDEDNAKNYEEALRLYQNALEY 39 (439)
T ss_pred HHHHHHhhhcchhchHHHHHHHHHHHHH
Confidence 4455555556678898888888887764
No 469
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=54.96 E-value=24 Score=18.64 Aligned_cols=20 Identities=20% Similarity=0.235 Sum_probs=9.1
Q ss_pred HHHHHHccCHHHHHHHHHHH
Q 023518 43 AQASIKLQNFTEAVADANRA 62 (281)
Q Consensus 43 a~~~~~l~~~~~A~~~~~~a 62 (281)
-.+|.+.|++++|...+++.
T Consensus 7 i~~~~~~~~~~~a~~~~~~M 26 (31)
T PF01535_consen 7 ISGYCKMGQFEEALEVFDEM 26 (31)
T ss_pred HHHHHccchHHHHHHHHHHH
Confidence 34444444444444444443
No 470
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=54.79 E-value=42 Score=33.79 Aligned_cols=60 Identities=20% Similarity=0.241 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHH------HHHcC----CC-cHHHHHHHHHHHHHhhcHHHHHHHHHHh
Q 023518 37 ELFADRAQASIKLQNFTEAVADANR------AIELE----PS-MSKAYWRKATACMKLEEYETAKVALEKG 96 (281)
Q Consensus 37 ~~~~~~a~~~~~l~~~~~A~~~~~~------al~l~----p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~a 96 (281)
.+|-.-|..|.+++++++|+++|++ |+++. |. -.+.--..|..+.+.|+++.|+..|-.+
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea 732 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEA 732 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHh
Confidence 4566777888888899999988775 44443 21 1233344788999999999999877654
No 471
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=54.74 E-value=51 Score=26.25 Aligned_cols=62 Identities=18% Similarity=0.098 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 023518 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI-SPN-------SAELFADRAQASIKLQNFTEAVADANRAIE 64 (281)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~al~~-~p~-------~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 64 (281)
......++.+++.|+.+.|.+.+.-+-.. .-. .....+.+|..++..|+|.+|...+..++.
T Consensus 76 ~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 76 KAAIKTANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 35678899999999999999998775322 100 134567899999999999999999888874
No 472
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=54.70 E-value=1.4e+02 Score=26.69 Aligned_cols=48 Identities=10% Similarity=0.082 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHccCHH
Q 023518 6 EKKAKEAFIDDYFELAYDLYSQAIEISPN--------SAELFADRAQASIKLQNFT 53 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~~p~--------~~~~~~~~a~~~~~l~~~~ 53 (281)
...|+.+.+.+++++|+..|.+.+...-. .......++..|...|++.
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~ 62 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYC 62 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcc
Confidence 57789999999999999999999987211 1345677888888877643
No 473
>PF13041 PPR_2: PPR repeat family
Probab=54.56 E-value=37 Score=20.74 Aligned_cols=30 Identities=13% Similarity=0.032 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Q 023518 37 ELFADRAQASIKLQNFTEAVADANRAIELE 66 (281)
Q Consensus 37 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 66 (281)
..|.-+-.+|.+.|++++|++.|++..+.+
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 345556666667777777777777666544
No 474
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=54.31 E-value=1.7e+02 Score=26.58 Aligned_cols=27 Identities=19% Similarity=0.016 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIE 30 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~ 30 (281)
++..+|.-+.+.||-+.|++.+++..+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ 132 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYE 132 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344445555555555555555544433
No 475
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.90 E-value=1.3e+02 Score=29.44 Aligned_cols=94 Identities=13% Similarity=0.114 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHH-HHHHHHccCHHHHHHHHHHH-----HHcCCCcHHHHHHHH
Q 023518 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPN-SAELFADR-AQASIKLQNFTEAVADANRA-----IELEPSMSKAYWRKA 77 (281)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~al~~~p~-~~~~~~~~-a~~~~~l~~~~~A~~~~~~a-----l~l~p~~~~a~~~~g 77 (281)
++..-..+-..|=+..|.+...-.+.++|. ++-+...+ -...++..+|+=-++.++.. +.+-|+. -|.++
T Consensus 345 l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~---~yS~A 421 (665)
T KOG2422|consen 345 LFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNF---GYSLA 421 (665)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCc---hHHHH
Confidence 344555666788999999999999999998 65433332 23333445565555555444 3333444 35566
Q ss_pred HHHHHhhc-----HHHHHHHHHHhhhcCC
Q 023518 78 TACMKLEE-----YETAKVALEKGASLAP 101 (281)
Q Consensus 78 ~~~~~~g~-----~~~A~~~~~~a~~~~p 101 (281)
.+++.+.. -+.|..++.+|+.+.|
T Consensus 422 lA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 422 LARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 66665543 5578899999999987
No 476
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=53.83 E-value=1.2e+02 Score=28.78 Aligned_cols=78 Identities=8% Similarity=0.033 Sum_probs=65.9
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCC
Q 023518 24 LYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP 101 (281)
Q Consensus 24 ~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~~p 101 (281)
.++.-++.+|++..-|+.+-.-|.-.+.+++-.+.|++...-.|-...+|...-..-...++|..-...|.+|+...-
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l 107 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL 107 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc
Confidence 566778889999999999999999999999999999999998888888887766666677888888888888876543
No 477
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=53.67 E-value=56 Score=22.23 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=7.6
Q ss_pred HccCHHHHHHHHHHHH
Q 023518 48 KLQNFTEAVADANRAI 63 (281)
Q Consensus 48 ~l~~~~~A~~~~~~al 63 (281)
..|++++|+..|..++
T Consensus 20 ~~g~~~eAl~~Y~~a~ 35 (77)
T smart00745 20 EAGDYEEALELYKKAI 35 (77)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 3445555544444444
No 478
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=53.60 E-value=1.2e+02 Score=27.47 Aligned_cols=77 Identities=17% Similarity=0.127 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhcCCC------CH-HHHHHHHHHHHH-------ccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhh
Q 023518 19 ELAYDLYSQAIEISPN------SA-ELFADRAQASIK-------LQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (281)
Q Consensus 19 ~~Al~~y~~al~~~p~------~~-~~~~~~a~~~~~-------l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g 84 (281)
.+.+..|...+..... .. ++...-+.+++. ....-+|+..++.++...|.+....+.+..+|..+|
T Consensus 152 ~~~~~~y~~~l~~~~~l~te~~~~d~~~lla~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG 231 (365)
T PF09797_consen 152 QELLKLYQESLSLGKDLKTESQPADELALLAAHSLLDLYSKTKDSEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLG 231 (365)
T ss_pred HHHHHHHHhhCccccccccccCchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC
Confidence 3445555555555321 11 333444455543 345777888888899999999999999999999999
Q ss_pred cHHHHHHHHHH
Q 023518 85 EYETAKVALEK 95 (281)
Q Consensus 85 ~~~~A~~~~~~ 95 (281)
-...|...|..
T Consensus 232 ~~~~A~~~~~~ 242 (365)
T PF09797_consen 232 AGSLALEHYES 242 (365)
T ss_pred CHHHHHHHHHh
Confidence 99988887754
No 479
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=53.58 E-value=52 Score=29.28 Aligned_cols=94 Identities=13% Similarity=0.036 Sum_probs=70.3
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc-----CCCcHH--HH
Q 023518 7 KKAKEAFIDDYFELAYDLYSQAIEI------SPNSAELFADRAQASIKLQNFTEAVADANRAIEL-----EPSMSK--AY 73 (281)
Q Consensus 7 ~~g~~~~~~~~y~~Al~~y~~al~~------~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l-----~p~~~~--a~ 73 (281)
...-.+++.|.|.+|+.+.+..+.. .++-.+.+..-+.+|....+...+...+..|-.+ .|.... .-
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lD 209 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLD 209 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHH
Confidence 3466789999999999998877654 3444678888999999999988887776665543 344333 33
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHhhhcC
Q 023518 74 WRKATACMKLEEYETAKVALEKGASLA 100 (281)
Q Consensus 74 ~~~g~~~~~~g~~~~A~~~~~~a~~~~ 100 (281)
+.-|+.+..-.+|..|..+|-.+++-.
T Consensus 210 L~sGIlhcdd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 210 LLSGILHCDDRDYKTASSYFIEALEGF 236 (421)
T ss_pred HhccceeeccccchhHHHHHHHHHhcc
Confidence 445777888889999999999888743
No 480
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=53.28 E-value=31 Score=33.33 Aligned_cols=45 Identities=13% Similarity=0.169 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 023518 19 ELAYDLYSQAIEI-----SPNSAELFADRAQASIKLQNFTEAVADANRAI 63 (281)
Q Consensus 19 ~~Al~~y~~al~~-----~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al 63 (281)
..++.+|.+|+.. +..+.--|..+|.+|++.++|.+|+..+..|-
T Consensus 296 ~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa 345 (618)
T PF05053_consen 296 PTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAA 345 (618)
T ss_dssp --HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHH
Confidence 4456666666654 23334457888999999999999998877654
No 481
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=52.56 E-value=30 Score=19.15 Aligned_cols=27 Identities=19% Similarity=0.065 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHh----hcHHHHHHHHHHhhh
Q 023518 72 AYWRKATACMKL----EEYETAKVALEKGAS 98 (281)
Q Consensus 72 a~~~~g~~~~~~----g~~~~A~~~~~~a~~ 98 (281)
+.+.+|..|..- .++.+|..+|+++.+
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 344455444432 245555555555543
No 482
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=52.09 E-value=94 Score=27.39 Aligned_cols=68 Identities=19% Similarity=0.111 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----------------------cCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 023518 20 LAYDLYSQAIEISPNSAELFADRAQASIKL----------------------QNFTEAVADANRAIELEPSMSKAYWRKA 77 (281)
Q Consensus 20 ~Al~~y~~al~~~p~~~~~~~~~a~~~~~l----------------------~~~~~A~~~~~~al~l~p~~~~a~~~~g 77 (281)
.-+..++.-++..|++..+++.+|.++... .-.+.|..++.+|+.++|....++..+-
T Consensus 61 ~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~ 140 (277)
T PF13226_consen 61 ARLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMI 140 (277)
T ss_pred hHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 456667777888999999999888888775 1256688889999999999988888887
Q ss_pred HHHHHhhcHH
Q 023518 78 TACMKLEEYE 87 (281)
Q Consensus 78 ~~~~~~g~~~ 87 (281)
.+-...|+.+
T Consensus 141 ~~s~~fgeP~ 150 (277)
T PF13226_consen 141 NISAYFGEPD 150 (277)
T ss_pred HHHhhcCCch
Confidence 7777777653
No 483
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=51.51 E-value=85 Score=23.10 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHhhhc
Q 023518 73 YWRKATACMKLEEYETAKVALEKGASL 99 (281)
Q Consensus 73 ~~~~g~~~~~~g~~~~A~~~~~~a~~~ 99 (281)
.+..|..-+..|+|..|.+.+.++.+.
T Consensus 62 al~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 62 ALSRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 344555555556666666666555444
No 484
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.99 E-value=73 Score=31.29 Aligned_cols=94 Identities=16% Similarity=0.226 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHh
Q 023518 17 YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKG 96 (281)
Q Consensus 17 ~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a 96 (281)
.|-+...+..+||...++ -..|=.+.+++|+++.|.+ +....++..-|-.+|.+....+++..|.+||.++
T Consensus 622 ~Fle~~g~~e~AL~~s~D----~d~rFelal~lgrl~iA~~-----la~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 622 HFLESQGMKEQALELSTD----PDQRFELALKLGRLDIAFD-----LAVEANSEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hHhhhccchHhhhhcCCC----hhhhhhhhhhcCcHHHHHH-----HHHhhcchHHHHHHHHHHhhcccchhHHHHHHhh
Q ss_pred hhc--------CCCChhHHHHHHHHHHHHHh
Q 023518 97 ASL--------APGDSRFTNLIKECEERIAE 119 (281)
Q Consensus 97 ~~~--------~p~~~~~~~~l~~~~~~l~~ 119 (281)
..+ ..++.....-++...++.+.
T Consensus 693 ~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 693 RDLGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred cchhhhhhhhhhcCChhHHHHHHHHHHhhcc
No 485
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=50.84 E-value=67 Score=21.78 Aligned_cols=14 Identities=29% Similarity=0.377 Sum_probs=6.3
Q ss_pred cCHHHHHHHHHHHH
Q 023518 50 QNFTEAVADANRAI 63 (281)
Q Consensus 50 ~~~~~A~~~~~~al 63 (281)
|+|++|+..|..++
T Consensus 20 g~~~~Al~~Y~~a~ 33 (75)
T cd02656 20 GNYEEALELYKEAL 33 (75)
T ss_pred CCHHHHHHHHHHHH
Confidence 44444444444443
No 486
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.11 E-value=55 Score=28.92 Aligned_cols=51 Identities=12% Similarity=0.246 Sum_probs=40.8
Q ss_pred HhcCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 023518 14 IDDYFELAYDLYSQAIEISPNSA----ELFADRAQASIKLQNFTEAVADANRAIE 64 (281)
Q Consensus 14 ~~~~y~~Al~~y~~al~~~p~~~----~~~~~~a~~~~~l~~~~~A~~~~~~al~ 64 (281)
+..+.++|+.-|.+++++.+.-. .++-..-.+++++++|.+-+..|.+.+.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 34578999999999999988764 4566677888899999998888877653
No 487
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=50.10 E-value=44 Score=25.48 Aligned_cols=38 Identities=11% Similarity=0.176 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHH
Q 023518 73 YWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLI 110 (281)
Q Consensus 73 ~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 110 (281)
...+|..+...|++++|..+|-+|+...|.-..+...+
T Consensus 66 qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i~ 103 (121)
T PF02064_consen 66 QVQLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQIY 103 (121)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 34588889999999999999999999998766544433
No 488
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=49.66 E-value=33 Score=23.84 Aligned_cols=22 Identities=18% Similarity=0.078 Sum_probs=10.1
Q ss_pred HHHHHHHhhcHHHHHHHHHHhh
Q 023518 76 KATACMKLEEYETAKVALEKGA 97 (281)
Q Consensus 76 ~g~~~~~~g~~~~A~~~~~~a~ 97 (281)
.|+-+-..|+|++|+.+|..++
T Consensus 12 ~Ave~D~~g~y~eA~~~Y~~ai 33 (76)
T cd02681 12 LAVQRDQEGRYSEAVFYYKEAA 33 (76)
T ss_pred HHHHHHHccCHHHHHHHHHHHH
Confidence 3333444455555554444443
No 489
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=49.24 E-value=41 Score=18.01 Aligned_cols=22 Identities=14% Similarity=0.022 Sum_probs=11.2
Q ss_pred HHHHHHHccCHHHHHHHHHHHH
Q 023518 42 RAQASIKLQNFTEAVADANRAI 63 (281)
Q Consensus 42 ~a~~~~~l~~~~~A~~~~~~al 63 (281)
+-.+|.+.|++++|+..|....
T Consensus 6 li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 6 LIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 3344555555555555555444
No 490
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=49.06 E-value=68 Score=29.02 Aligned_cols=63 Identities=24% Similarity=0.173 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI--SP--NSAELFADRAQASIKLQNFTEAVADANRAIE 64 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~--~p--~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 64 (281)
.+.++..|...|.-|+|..|..++-..... ++ +...++...-..-+.+.+|+-|++++.+.-+
T Consensus 129 i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre 195 (432)
T KOG2758|consen 129 IETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLRE 195 (432)
T ss_pred HHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 346677788888888888887764433332 22 2334444444555566778888887776554
No 491
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=49.02 E-value=1.8e+02 Score=25.23 Aligned_cols=90 Identities=17% Similarity=-0.011 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHccCHH-HHHHHHHHHHHcC------CCcHHHH
Q 023518 6 EKKAKEAFIDDYFELAYDLYSQAIEI-----SPNSAELFADRAQASIKLQNFT-EAVADANRAIELE------PSMSKAY 73 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~-----~p~~~~~~~~~a~~~~~l~~~~-~A~~~~~~al~l~------p~~~~a~ 73 (281)
++=+..+++.+++.-|.++..-.++. .+.+....-+++.++.....-+ +-....++|++-. -.++..|
T Consensus 14 ~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH 93 (260)
T PF04190_consen 14 YSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELH 93 (260)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHH
T ss_pred HHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHH
Confidence 34455566777777666654444433 2334444456666666554321 2233333444322 2468899
Q ss_pred HHHHHHHHHhhcHHHHHHHHHH
Q 023518 74 WRKATACMKLEEYETAKVALEK 95 (281)
Q Consensus 74 ~~~g~~~~~~g~~~~A~~~~~~ 95 (281)
..+|..|.+.|+|.+|..+|-.
T Consensus 94 ~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 94 HLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHHHhhccHHHHHHHHHh
Confidence 9999999999999999987744
No 492
>PRK11619 lytic murein transglycosylase; Provisional
Probab=48.61 E-value=1.5e+02 Score=29.47 Aligned_cols=60 Identities=8% Similarity=-0.040 Sum_probs=43.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhh
Q 023518 39 FADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGAS 98 (281)
Q Consensus 39 ~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~ 98 (281)
.-.+....+..++++.+...+...-.........+|-+|.++..+|+.++|...|+++..
T Consensus 315 ~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 315 LERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 333444555777777766666664333345677889999999999999999999999744
No 493
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=48.19 E-value=91 Score=28.44 Aligned_cols=111 Identities=14% Similarity=0.102 Sum_probs=76.2
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCC---CCH---HHHHHHHHHHHHccCHHHH--HHHHHHHHHcCCCcHHHHHHHHH
Q 023518 7 KKAKEAFIDDYFELAYDLYSQAIEISP---NSA---ELFADRAQASIKLQNFTEA--VADANRAIELEPSMSKAYWRKAT 78 (281)
Q Consensus 7 ~~g~~~~~~~~y~~Al~~y~~al~~~p---~~~---~~~~~~a~~~~~l~~~~~A--~~~~~~al~l~p~~~~a~~~~g~ 78 (281)
+-|..+...+||..|..+|-+|++-.- ++. ..+-.+-.|-+.++..++. +-....+++.+..+..+....+.
T Consensus 214 qSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAe 293 (411)
T KOG1463|consen 214 QSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAE 293 (411)
T ss_pred hccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHH
Confidence 446667777999999999999988521 112 2344455566666666654 44455677877788889888888
Q ss_pred HHHH--hhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023518 79 ACMK--LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 79 ~~~~--~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~l~~~ 120 (281)
++.. +.+|+.|+..|..-+..| +.+...+..++..+-+.
T Consensus 294 A~~nRSLkdF~~AL~~yk~eL~~D---~ivr~Hl~~Lyd~lLEk 334 (411)
T KOG1463|consen 294 AFGNRSLKDFEKALADYKKELAED---PIVRSHLQSLYDNLLEK 334 (411)
T ss_pred HhcCCcHHHHHHHHHHhHHHHhcC---hHHHHHHHHHHHHHHHH
Confidence 8875 578999999988777665 44566666666554443
No 494
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=47.39 E-value=35 Score=25.52 Aligned_cols=30 Identities=30% Similarity=0.324 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~ 31 (281)
|..++.+|..++..||.+.|.-+|.+.+.+
T Consensus 38 a~~l~~~A~~~~~egd~E~AYvl~~R~~~L 67 (115)
T PF08969_consen 38 ANKLLREAEEYRQEGDEEQAYVLYMRYLTL 67 (115)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 456788888888888888888888887765
No 495
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=45.58 E-value=1.4e+02 Score=29.20 Aligned_cols=57 Identities=21% Similarity=0.068 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 023518 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60 (281)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~ 60 (281)
+..++.++..+-.-+..+.|-.+|++.+.++++ ..++..|.-+.+.|-...|...+.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 42 SLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred HHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 346778888888999999999999999999998 567888888888887777766555
No 496
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.43 E-value=1.2e+02 Score=30.90 Aligned_cols=28 Identities=21% Similarity=0.172 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 023518 4 DLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (281)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~al~~ 31 (281)
-+...|.-+|..|+|++|...|-+.+..
T Consensus 370 i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 370 IHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 3455666677777777777777666654
No 497
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=45.41 E-value=71 Score=29.79 Aligned_cols=59 Identities=12% Similarity=0.124 Sum_probs=42.9
Q ss_pred HHHHhcCHHHHHHHHHHHHhc--CC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc
Q 023518 11 EAFIDDYFELAYDLYSQAIEI--SP--NSAELFADRAQASIKLQNFTEAVADANRAIELEPSM 69 (281)
Q Consensus 11 ~~~~~~~y~~Al~~y~~al~~--~p--~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 69 (281)
.|...+.|+.|-.+..++.-- .. .-+.+++..|.+..-..+|..|.+++-.|++..|..
T Consensus 218 ~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 218 NYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 345566777777777665421 11 225677888888888899999999999999998864
No 498
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=44.79 E-value=2.4e+02 Score=25.80 Aligned_cols=60 Identities=22% Similarity=0.172 Sum_probs=47.0
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHhhcHHHHHHHHHHhhhc
Q 023518 40 ADRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWRKATACMKLEEYETAKVALEKGASL 99 (281)
Q Consensus 40 ~~~a~~~~~l~~~~~A~~~~~~al~l~p~--~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~~ 99 (281)
.++|.|..++|+..+|+..++...+-.|- ....+-++-.++..+.-|.+....+.+.-.+
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi 340 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI 340 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34799999999999999999998887773 2456667778888888888777777666544
No 499
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=44.77 E-value=7.2 Score=37.72 Aligned_cols=97 Identities=20% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHh--cCC-CCHHHHHHHHHHHHHccCHHHHHHHHHH--HHHcCCC-cHHHHHHHHH
Q 023518 5 LEKKAKEAFIDDYFELAYDLYSQAIE--ISP-NSAELFADRAQASIKLQNFTEAVADANR--AIELEPS-MSKAYWRKAT 78 (281)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~al~--~~p-~~~~~~~~~a~~~~~l~~~~~A~~~~~~--al~l~p~-~~~a~~~~g~ 78 (281)
++..+..++..|++..|...+.+.-. +.+ ....+.+..|.+....|++..|+..+.. ...+.+. ....+..++.
T Consensus 27 ~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l~A~ 106 (536)
T PF04348_consen 27 LLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQLRAQ 106 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHHHHH
Confidence 35567888999999999999988662 222 3356778899999999999999998874 1122222 2445556788
Q ss_pred HHHHhhcHHHHHHHHHHhhhcCC
Q 023518 79 ACMKLEEYETAKVALEKGASLAP 101 (281)
Q Consensus 79 ~~~~~g~~~~A~~~~~~a~~~~p 101 (281)
++...|++-+|...+-..-.+-+
T Consensus 107 a~~~~~~~l~Aa~~~i~l~~lL~ 129 (536)
T PF04348_consen 107 AYEQQGDPLAAARERIALDPLLP 129 (536)
T ss_dssp -----------------------
T ss_pred HHHhcCCHHHHHHHHHHHhhhcC
Confidence 99999998888877665554433
No 500
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=44.66 E-value=99 Score=21.06 Aligned_cols=13 Identities=23% Similarity=0.230 Sum_probs=5.0
Q ss_pred ccCHHHHHHHHHH
Q 023518 49 LQNFTEAVADANR 61 (281)
Q Consensus 49 l~~~~~A~~~~~~ 61 (281)
.|+|++|+..|..
T Consensus 19 ~g~y~eA~~~Y~~ 31 (75)
T cd02678 19 AGNYEEALRLYQH 31 (75)
T ss_pred cCCHHHHHHHHHH
Confidence 3333333333333
Done!