Query 023519
Match_columns 281
No_of_seqs 95 out of 113
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 08:13:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023519.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023519hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dve_B Voltage-dependent N-typ 53.4 4.8 0.00016 24.5 1.0 19 111-129 1-19 (23)
2 3dvk_B Voltage-dependent R-typ 49.3 8.5 0.00029 23.4 1.7 19 111-129 2-20 (23)
3 3bxl_B CAM, voltage-dependent 38.3 18 0.0006 22.6 1.9 20 114-133 1-20 (26)
4 3g43_E Voltage-dependent L-typ 33.3 13 0.00045 28.7 0.9 20 108-127 56-75 (81)
5 2f6m_A Suppressor protein STP2 31.5 48 0.0016 24.4 3.7 22 12-35 4-25 (65)
6 2xf7_A GP23.1; viral protein; 26.1 16 0.00056 25.7 0.3 21 119-139 4-24 (51)
7 3zym_A Phosphatidylinositol-bi 22.0 1.7E+02 0.0057 26.8 6.3 73 8-92 210-306 (310)
8 2qsr_A Transcription-repair co 17.8 43 0.0015 28.2 1.3 21 10-30 31-51 (173)
9 2kbv_A Sodium/hydrogen exchang 14.6 45 0.0015 20.9 0.5 22 244-269 5-27 (28)
10 1baz_A ARC repressor; transcri 14.3 1.4E+02 0.0048 20.3 3.0 25 12-36 18-42 (53)
No 1
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=53.38 E-value=4.8 Score=24.47 Aligned_cols=19 Identities=21% Similarity=0.787 Sum_probs=15.7
Q ss_pred hhhhHHHHHhhhhHhhhhh
Q 023519 111 RLGRVYVASILYGYFLKSA 129 (281)
Q Consensus 111 ~Lg~vyAAsmM~GYFLr~~ 129 (281)
.+|++||+=|++-||=++-
T Consensus 1 ~VGKiYAallI~d~~r~~k 19 (23)
T 3dve_B 1 HMGKVYAALMIFDFYKQNK 19 (26)
T ss_dssp CCHHHHHHHHHHHHHHHTC
T ss_pred ChHHHHHHHHHHHHHHHHh
Confidence 3699999999999996543
No 2
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=49.32 E-value=8.5 Score=23.35 Aligned_cols=19 Identities=26% Similarity=0.772 Sum_probs=16.2
Q ss_pred hhhhHHHHHhhhhHhhhhh
Q 023519 111 RLGRVYVASILYGYFLKSA 129 (281)
Q Consensus 111 ~Lg~vyAAsmM~GYFLr~~ 129 (281)
.+|++||+=|++-||-+.-
T Consensus 2 ~VGKiYA~llI~d~~r~~k 20 (23)
T 3dvk_B 2 HMGKIYAAMMIMDYYKQSK 20 (26)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHh
Confidence 4799999999999997653
No 3
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=38.33 E-value=18 Score=22.57 Aligned_cols=20 Identities=20% Similarity=0.532 Sum_probs=16.2
Q ss_pred hHHHHHhhhhHhhhhhhhHh
Q 023519 114 RVYVASILYGYFLKSASLRY 133 (281)
Q Consensus 114 ~vyAAsmM~GYFLr~~eqR~ 133 (281)
++|||=|++-||=++=..|-
T Consensus 1 KvYAa~mI~e~yrq~K~~r~ 20 (26)
T 3bxl_B 1 KIYAAMMIMDYYKQSKVKKQ 20 (26)
T ss_pred ChhHHHHHHHHHHHHHhhhh
Confidence 48999999999977766654
No 4
>3g43_E Voltage-dependent L-type calcium channel subunit alpha-1C; calmodulin-bound, coiled coil, acetylation, methylation, phosphoprotein, polymorphism; 2.10A {Homo sapiens} PDB: 3oxq_E
Probab=33.33 E-value=13 Score=28.70 Aligned_cols=20 Identities=25% Similarity=0.645 Sum_probs=15.4
Q ss_pred chhhhhhHHHHHhhhhHhhh
Q 023519 108 QRLRLGRVYVASILYGYFLK 127 (281)
Q Consensus 108 sr~~Lg~vyAAsmM~GYFLr 127 (281)
+..++|++||+=|++-||=+
T Consensus 56 ~~lTVGKiYA~llI~d~~r~ 75 (81)
T 3g43_E 56 DEVTVGKFYATFLIQEYFRK 75 (81)
T ss_dssp ---CCCCHHHHHHHHHHHHH
T ss_pred CcEeehHHHHHHHHHHHHHH
Confidence 56889999999999999954
No 5
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=31.48 E-value=48 Score=24.44 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023519 12 NARRIAQLKEHECQTAVEDVMYML 35 (281)
Q Consensus 12 LyrRIAevKe~Err~alEdImY~l 35 (281)
||+.+=++-+.|+ |+||.||.|
T Consensus 4 l~~Qll~l~Aed~--AieDaiy~L 25 (65)
T 2f6m_A 4 GLNQLYNLVAQDY--ALTDTIEAL 25 (65)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHH
Confidence 6788878888775 999999986
No 6
>2xf7_A GP23.1; viral protein; 1.61A {Bacillus phage SPP1} PDB: 2xf5_A 2xf6_A
Probab=26.08 E-value=16 Score=25.66 Aligned_cols=21 Identities=52% Similarity=0.599 Sum_probs=13.4
Q ss_pred HhhhhHhhhhhhhHhHHHHHH
Q 023519 119 SILYGYFLKSASLRYYLEECL 139 (281)
Q Consensus 119 smM~GYFLr~~eqR~~LE~sl 139 (281)
|++||||+-.--.--.+|.-|
T Consensus 4 S~L~G~F~D~W~~GT~~~~~m 24 (51)
T 2xf7_A 4 SLLYGYFLDSWLDGTASEELL 24 (51)
T ss_dssp CTTHHHHHHHHHHTCCCHHHH
T ss_pred hHHHHHHHHHHhcchhhHHHH
Confidence 789999997654444444433
No 7
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=21.96 E-value=1.7e+02 Score=26.79 Aligned_cols=73 Identities=11% Similarity=0.203 Sum_probs=37.3
Q ss_pred hhHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH------HHHHHhh-------CCccccCCcccccCCccccC
Q 023519 8 FCFLNARRIAQ-----------LKEHECQTAVEDVMYMLI------LYKFSEI-------RVQLVPKLSRCIYNGRLEIW 63 (281)
Q Consensus 8 ~~~vLyrRIAe-----------vKe~Err~alEdImY~lI------v~KF~~~-------~V~mvP~ls~~~~~Grl~~w 63 (281)
|.+.||+.|.+ |...+|.+|+| +|.-- +.+|.+. ++ -+|+|... .
T Consensus 210 ds~~lY~~inegii~lLe~ffem~~~da~~al~--iykrf~~Q~e~L~~Fy~~ck~l~l~~~-~iP~L~~~--------p 278 (310)
T 3zym_A 210 DAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLD--IYKKFLTRMTRISEFLKVAEQVGIDRG-DISGSGSG--------H 278 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTC----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCCC-CCCCCCcc--------c
Confidence 34456666665 46678888888 45433 2344432 22 35665542 1
Q ss_pred CccchhhhccCchHHHHHHHHHHHHhhcc
Q 023519 64 PSKDWELESIHEFEVLEMIREHISTVIGL 92 (281)
Q Consensus 64 p~~~~~Le~ihS~Ev~emI~~hl~~vLG~ 92 (281)
|+.-.+|++-- .||.++|++|+..||..
T Consensus 279 ~d~l~~lq~~i-~ev~~im~~ni~~vl~r 306 (310)
T 3zym_A 279 MDRVRNLQSEV-EGVKNIMTQNVERILAR 306 (310)
T ss_dssp -----CHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHH-HHHHHHHHHhHHHHHhc
Confidence 22334455433 68899999999999853
No 8
>2qsr_A Transcription-repair coupling factor; structural genomics, PSI-2, protein ST initiative; 3.10A {Streptococcus pneumoniae}
Probab=17.83 E-value=43 Score=28.23 Aligned_cols=21 Identities=10% Similarity=0.164 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023519 10 FLNARRIAQLKEHECQTAVED 30 (281)
Q Consensus 10 ~vLyrRIAevKe~Err~alEd 30 (281)
+-+|||||.++..|--.++++
T Consensus 31 L~lYkria~~~~~eel~~l~~ 51 (173)
T 2qsr_A 31 IEIYKKIRQIDNRVNYEELQE 51 (173)
T ss_dssp HHHHHHHHTCCSHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHH
Confidence 468999999988776555543
No 9
>2kbv_A Sodium/hydrogen exchanger 1; transmembrane, peptide, NHE1, micelle, alternative splicing, antiport, glycoprotein, ION transport, membrane; NMR {Synthetic}
Probab=14.62 E-value=45 Score=20.86 Aligned_cols=22 Identities=32% Similarity=0.703 Sum_probs=14.8
Q ss_pred EEechhhhHHHHHHHHhhh-hhhhhhh
Q 023519 244 ILTSFSSLKRLVLEAIAFG-SFLWDAE 269 (281)
Q Consensus 244 i~isfs~LkrLVLEAVAFG-SFLwDvE 269 (281)
..+.|+|||= ||||+ +++||.|
T Consensus 5 ~i~~~~GLRG----AvafaL~~~l~~~ 27 (28)
T 2kbv_A 5 FIIAYGGLRG----AIAFSLGYLLDKK 27 (28)
T ss_dssp HHTTTTSSCH----HHHHHHHHHHHHC
T ss_pred eEEEeecchH----HHHHHHHHhccCC
Confidence 3478899987 77776 4555544
No 10
>1baz_A ARC repressor; transcription regulation; 1.90A {Enterobacteria phage P22} SCOP: a.43.1.1 PDB: 1bdv_A* 1arq_A 1arr_A 1bdt_A* 1par_A* 1myk_A 1qtg_A 1b28_A 1myl_A
Probab=14.32 E-value=1.4e+02 Score=20.32 Aligned_cols=25 Identities=4% Similarity=0.135 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023519 12 NARRIAQLKEHECQTAVEDVMYMLI 36 (281)
Q Consensus 12 LyrRIAevKe~Err~alEdImY~lI 36 (281)
||+||++.-+.+.|..=.+|.|+|-
T Consensus 18 L~~~l~~~A~~~grS~N~~i~~~L~ 42 (53)
T 1baz_A 18 VLDLVRKVAEENGRSVNSEIYQRVM 42 (53)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 8999999999999988888877653
Done!