BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023520
         (281 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
           Carboxyl-Terminal Src Kinase At 2.5 A Resolution
 pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
           Carboxyl-Terminal Src Kinase At 2.5 A Resolution
 pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
           Carboxyl-Terminal Src Kinase At 2.5 A Resolution
 pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
           Carboxyl-Terminal Src Kinase At 2.5 A Resolution
 pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
           Carboxyl-Terminal Src Kinase At 2.5 A Resolution
 pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
           Carboxyl-Terminal Src Kinase At 2.5 A Resolution
          Length = 450

 Score = 32.3 bits (72), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)

Query: 161 NFNHNDLGASASVIADTNVAPLAPMPLLRDGSPPGNMGSLPCLKSMTWT 209
           NF H DL A   ++++ NVA ++   L ++ S   + G LP    + WT
Sbjct: 309 NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLP----VKWT 353


>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In
           Complex With Inhibitor Staurosporine
          Length = 278

 Score = 32.3 bits (72), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)

Query: 161 NFNHNDLGASASVIADTNVAPLAPMPLLRDGSPPGNMGSLPCLKSMTWT 209
           NF H DL A   ++++ NVA ++   L ++ S   + G LP    + WT
Sbjct: 137 NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLP----VKWT 181


>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its
           Inactivator Csk
 pdb|3D7U|C Chain C, Structural Basis For The Recognition Of C-Src By Its
           Inactivator Csk
          Length = 263

 Score = 32.3 bits (72), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)

Query: 161 NFNHNDLGASASVIADTNVAPLAPMPLLRDGSPPGNMGSLPCLKSMTWT 209
           NF H DL A   ++++ NVA ++   L ++ S   + G LP    + WT
Sbjct: 122 NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLP----VKWT 166


>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its
           Inactivator Csk
          Length = 269

 Score = 31.6 bits (70), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)

Query: 161 NFNHNDLGASASVIADTNVAPLAPMPLLRDGSPPGNMGSLPCLKSMTWT 209
           NF H DL A   ++++ NVA ++   L ++ S   + G LP    + WT
Sbjct: 128 NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLP----VKWT 172


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.311    0.126    0.363 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,706,582
Number of Sequences: 62578
Number of extensions: 284156
Number of successful extensions: 634
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 628
Number of HSP's gapped (non-prelim): 6
length of query: 281
length of database: 14,973,337
effective HSP length: 98
effective length of query: 183
effective length of database: 8,840,693
effective search space: 1617846819
effective search space used: 1617846819
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)